Query 006624
Match_columns 638
No_of_seqs 847 out of 3557
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 04:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.4E-41 2.9E-45 357.9 43.0 490 123-627 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-39 3.7E-44 349.3 38.4 465 157-636 81-569 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-28 2.3E-32 242.9 50.2 362 132-540 6-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 7.2E-28 2.5E-32 242.7 48.3 361 168-610 7-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-30 3.9E-35 267.0 25.5 214 390-629 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.7E-30 1.6E-34 262.5 25.1 206 353-559 7-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 9E-24 3.1E-28 221.4 41.1 440 125-576 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.8E-24 2.3E-28 222.3 39.9 445 160-618 6-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.2E-22 7.7E-27 206.9 41.0 302 194-540 25-357 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 3.2E-22 1.1E-26 205.7 41.6 338 124-519 25-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 4.5E-22 1.5E-26 209.7 40.8 434 125-576 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.4E-22 8.1E-27 211.8 36.3 429 160-611 25-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.5E-19 1.9E-23 175.4 41.1 325 125-506 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.7E-23 173.3 41.5 329 196-594 4-352 (359)
15 2xm6_A Protein corresponding t 99.9 9.6E-17 3.3E-21 166.4 52.2 352 159-577 38-433 (490)
16 2xm6_A Protein corresponding t 99.9 2.9E-16 9.9E-21 162.7 53.1 363 109-542 27-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 4.3E-17 1.5E-21 170.8 45.5 431 148-611 2-492 (530)
18 3hym_B Cell division cycle pro 99.8 3E-18 1E-22 168.0 31.8 301 156-492 18-320 (330)
19 3hym_B Cell division cycle pro 99.8 3.9E-18 1.3E-22 167.2 32.1 295 121-459 18-322 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.1E-16 7.2E-21 165.6 46.2 425 122-576 10-492 (530)
21 1fch_A Peroxisomal targeting s 99.8 3.8E-18 1.3E-22 170.1 26.1 123 172-297 37-163 (368)
22 1xi4_A Clathrin heavy chain; a 99.8 7.1E-15 2.4E-19 159.3 51.3 385 157-603 982-1376(1630)
23 1fch_A Peroxisomal targeting s 99.8 6.3E-18 2.1E-22 168.6 26.3 305 243-574 37-357 (368)
24 1xi4_A Clathrin heavy chain; a 99.8 2.3E-14 7.8E-19 155.4 53.6 440 90-596 951-1415(1630)
25 4g1t_A Interferon-induced prot 99.8 4.6E-16 1.6E-20 160.7 35.7 151 457-620 315-469 (472)
26 4eqf_A PEX5-related protein; a 99.8 3.7E-17 1.3E-21 162.8 25.7 244 265-540 64-309 (365)
27 4eqf_A PEX5-related protein; a 99.8 3.8E-17 1.3E-21 162.7 24.6 278 124-432 64-352 (365)
28 4g1t_A Interferon-induced prot 99.8 1E-15 3.5E-20 158.1 36.3 151 422-585 315-469 (472)
29 1b89_A Protein (clathrin heavy 99.8 4.7E-17 1.6E-21 158.2 23.9 283 172-500 15-305 (449)
30 1b89_A Protein (clathrin heavy 99.8 1.1E-16 3.8E-21 155.7 25.1 289 95-429 9-304 (449)
31 3spa_A Mtrpol, DNA-directed RN 99.8 1.4E-18 4.6E-23 182.2 11.2 152 475-631 125-286 (1134)
32 3cv0_A Peroxisome targeting si 99.8 4.9E-16 1.7E-20 151.9 28.6 274 163-501 24-310 (327)
33 3cv0_A Peroxisome targeting si 99.8 5.9E-16 2E-20 151.3 28.4 277 125-433 21-312 (327)
34 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4.2E-20 145.5 29.2 150 170-330 9-159 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-18 8.7E-23 180.2 11.2 119 510-628 125-247 (1134)
36 3mkr_A Coatomer subunit epsilo 99.7 7.8E-16 2.7E-20 146.9 27.5 252 134-400 8-263 (291)
37 2pl2_A Hypothetical conserved 99.7 2.3E-15 7.8E-20 137.2 22.3 196 160-362 5-211 (217)
38 2pl2_A Hypothetical conserved 99.7 5.6E-15 1.9E-19 134.6 23.1 200 122-328 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.7 1.4E-14 4.7E-19 136.2 26.4 226 125-365 5-236 (258)
40 3e4b_A ALGK; tetratricopeptide 99.7 8E-15 2.7E-19 149.5 23.3 346 166-577 9-388 (452)
41 3e4b_A ALGK; tetratricopeptide 99.6 3.4E-14 1.2E-18 144.8 25.6 215 130-363 8-244 (452)
42 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.3E-18 125.9 26.5 200 161-364 9-210 (225)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.7E-18 128.8 26.3 202 125-330 37-238 (252)
44 1ouv_A Conserved hypothetical 99.6 1.2E-12 3.9E-17 124.2 33.0 224 124-366 5-252 (273)
45 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.8E-18 129.9 25.1 95 268-364 7-107 (258)
46 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 6E-18 135.1 27.1 245 124-378 96-360 (382)
47 3u4t_A TPR repeat-containing p 99.6 1E-13 3.4E-18 131.5 24.5 241 125-372 3-255 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 3.5E-13 1.2E-17 126.1 27.9 211 160-377 37-248 (252)
49 2q7f_A YRRB protein; TPR, prot 99.6 4.9E-14 1.7E-18 131.1 21.4 202 124-331 22-223 (243)
50 2vq2_A PILW, putative fimbrial 99.6 5.7E-13 2E-17 122.0 27.1 206 123-331 6-212 (225)
51 4e6h_A MRNA 3'-END-processing 99.6 7.5E-11 2.6E-15 124.1 46.1 230 392-627 329-584 (679)
52 2h6f_A Protein farnesyltransfe 99.6 3E-13 1E-17 133.3 26.2 248 160-452 97-363 (382)
53 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-13 6.6E-18 127.0 22.1 203 158-366 21-223 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.7E-14 2.3E-18 132.9 18.1 247 102-359 18-269 (275)
55 3u4t_A TPR repeat-containing p 99.6 9.5E-13 3.2E-17 124.7 25.3 257 159-451 2-264 (272)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.9E-13 6.6E-18 129.7 19.6 225 135-366 15-245 (275)
57 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.2E-16 115.9 32.4 224 335-612 5-252 (273)
58 4e6h_A MRNA 3'-END-processing 99.5 3.9E-10 1.3E-14 118.7 42.0 414 122-541 63-570 (679)
59 3sf4_A G-protein-signaling mod 99.5 2.9E-12 1E-16 129.1 24.9 246 194-470 8-295 (406)
60 3sf4_A G-protein-signaling mod 99.5 1.5E-12 5.1E-17 131.3 22.1 302 300-633 8-363 (406)
61 2ond_A Cleavage stimulation fa 99.5 1.9E-11 6.6E-16 117.9 28.7 219 142-366 33-271 (308)
62 3vtx_A MAMA; tetratricopeptide 99.5 5.4E-12 1.8E-16 111.5 22.6 61 162-223 7-67 (184)
63 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4.2E-17 132.3 20.8 237 201-470 54-331 (411)
64 4a1s_A PINS, partner of inscut 99.5 1.8E-12 6E-17 131.1 22.0 280 125-436 48-372 (411)
65 3vtx_A MAMA; tetratricopeptide 99.5 6.3E-12 2.2E-16 111.1 22.6 168 194-366 4-171 (184)
66 3ro2_A PINS homolog, G-protein 99.5 2E-12 6.9E-17 126.4 20.6 237 126-363 6-290 (338)
67 3ro2_A PINS homolog, G-protein 99.5 2.5E-12 8.5E-17 125.8 19.9 238 199-469 9-290 (338)
68 4abn_A Tetratricopeptide repea 99.5 2.9E-12 1E-16 131.4 21.0 215 141-362 84-318 (474)
69 2ond_A Cleavage stimulation fa 99.5 3E-11 1E-15 116.5 27.0 221 106-332 33-272 (308)
70 4abn_A Tetratricopeptide repea 99.5 3.3E-12 1.1E-16 131.0 20.6 215 104-327 83-318 (474)
71 3ulq_A Response regulator aspa 99.4 2.4E-11 8.3E-16 121.4 24.7 235 272-540 109-367 (383)
72 3nf1_A KLC 1, kinesin light ch 99.4 8.9E-13 3.1E-17 127.5 13.8 242 122-364 24-306 (311)
73 3ulq_A Response regulator aspa 99.4 3.5E-11 1.2E-15 120.2 23.4 299 136-470 23-367 (383)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.5E-11 5.2E-16 118.8 17.4 238 371-610 27-306 (311)
75 3as5_A MAMA; tetratricopeptide 99.4 1.1E-10 3.7E-15 102.9 21.1 160 164-328 12-171 (186)
76 4gyw_A UDP-N-acetylglucosamine 99.4 3.4E-11 1.1E-15 128.4 20.6 164 160-328 9-172 (723)
77 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.9E-15 102.2 20.5 167 125-296 8-174 (186)
78 1hz4_A MALT regulatory protein 99.3 2E-09 6.8E-14 106.9 31.0 167 409-575 137-321 (373)
79 3q15_A PSP28, response regulat 99.3 7.2E-10 2.5E-14 110.3 27.6 236 270-540 105-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.3 7.9E-11 2.7E-15 125.6 21.1 166 194-364 8-173 (723)
81 4i17_A Hypothetical protein; T 99.3 2.9E-10 1E-14 104.2 22.2 208 123-344 5-222 (228)
82 1hz4_A MALT regulatory protein 99.3 2.3E-09 7.8E-14 106.5 29.6 195 169-363 23-242 (373)
83 4i17_A Hypothetical protein; T 99.3 6E-10 2.1E-14 102.1 23.1 209 157-380 4-222 (228)
84 3q15_A PSP28, response regulat 99.3 3.8E-09 1.3E-13 105.1 28.1 166 199-365 105-290 (378)
85 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4E-15 110.6 15.4 227 137-364 13-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 1.8E-10 6E-15 109.4 14.8 227 103-330 15-281 (283)
87 1qqe_A Vesicular transport pro 99.2 6E-10 2E-14 106.3 16.3 169 196-364 78-268 (292)
88 3qky_A Outer membrane assembly 99.2 2.8E-09 9.5E-14 99.9 20.1 187 123-330 13-224 (261)
89 2uy1_A Cleavage stimulation fa 99.1 6E-08 2.1E-12 99.2 30.4 215 123-365 13-242 (493)
90 1qqe_A Vesicular transport pro 99.1 3.4E-09 1.1E-13 101.1 18.8 205 125-329 37-268 (292)
91 2fo7_A Synthetic consensus TPR 99.1 6.3E-09 2.1E-13 85.9 18.0 126 199-328 5-130 (136)
92 3qky_A Outer membrane assembly 99.1 4.1E-09 1.4E-13 98.8 18.6 91 101-191 27-128 (261)
93 2fo7_A Synthetic consensus TPR 99.1 6.5E-09 2.2E-13 85.8 17.5 129 163-295 4-132 (136)
94 3urz_A Uncharacterized protein 99.1 5.1E-09 1.7E-13 94.2 18.0 125 201-330 60-186 (208)
95 2pzi_A Probable serine/threoni 99.1 1.7E-09 5.6E-14 116.1 15.9 171 136-313 402-580 (681)
96 2uy1_A Cleavage stimulation fa 99.1 4.8E-07 1.6E-11 92.5 33.3 201 392-610 199-412 (493)
97 3urz_A Uncharacterized protein 99.1 8.3E-09 2.8E-13 92.8 17.8 172 197-376 6-195 (208)
98 3mv2_B Coatomer subunit epsilo 99.1 4.7E-08 1.6E-12 91.2 23.0 144 426-574 85-238 (310)
99 2pzi_A Probable serine/threoni 99.0 2.3E-09 8E-14 114.9 15.8 174 171-351 402-583 (681)
100 3qou_A Protein YBBN; thioredox 99.0 8.3E-09 2.8E-13 98.0 17.1 166 158-328 115-282 (287)
101 3dra_A Protein farnesyltransfe 99.0 3.1E-07 1.1E-11 86.7 27.5 219 140-364 48-286 (306)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.7E-08 1.3E-12 89.8 20.7 60 307-366 153-214 (225)
103 3dra_A Protein farnesyltransfe 99.0 3.2E-07 1.1E-11 86.6 26.9 153 280-435 124-286 (306)
104 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.8E-08 1.7E-12 89.0 20.3 189 124-332 3-215 (225)
105 3mv2_B Coatomer subunit epsilo 99.0 4.2E-08 1.4E-12 91.5 19.9 181 179-366 85-283 (310)
106 3rjv_A Putative SEL1 repeat pr 99.0 5.3E-08 1.8E-12 87.7 20.2 162 442-612 18-198 (212)
107 4ga2_A E3 SUMO-protein ligase 99.0 2.4E-09 8.3E-14 90.5 10.6 141 135-280 7-148 (150)
108 2r5s_A Uncharacterized protein 99.0 6.5E-09 2.2E-13 90.7 13.7 162 163-329 9-172 (176)
109 4ga2_A E3 SUMO-protein ligase 99.0 2.8E-09 9.4E-14 90.1 10.8 110 171-284 8-117 (150)
110 3rjv_A Putative SEL1 repeat pr 99.0 8.1E-08 2.8E-12 86.5 21.1 176 178-366 4-198 (212)
111 2r5s_A Uncharacterized protein 99.0 9.8E-09 3.4E-13 89.5 13.7 163 127-294 8-172 (176)
112 2vsy_A XCC0866; transferase, g 98.9 2.9E-08 1E-12 104.5 18.9 156 138-298 2-160 (568)
113 2vsy_A XCC0866; transferase, g 98.9 3E-08 1E-12 104.5 18.0 153 103-261 3-158 (568)
114 3qou_A Protein YBBN; thioredox 98.9 3.2E-08 1.1E-12 93.9 16.2 167 122-293 114-282 (287)
115 3u3w_A Transcriptional activat 98.9 4.8E-07 1.6E-11 86.2 23.3 164 201-364 81-265 (293)
116 3q7a_A Farnesyltransferase alp 98.8 3.5E-06 1.2E-10 80.3 26.3 229 130-364 59-330 (349)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.4E-12 90.8 17.0 200 138-363 4-222 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.5E-07 1.5E-11 81.7 19.2 129 163-297 9-152 (213)
119 3u3w_A Transcriptional activat 98.8 3.2E-06 1.1E-10 80.4 25.9 163 448-610 81-265 (293)
120 3q7a_A Farnesyltransferase alp 98.8 5.8E-06 2E-10 78.8 26.6 139 172-315 66-215 (349)
121 4gco_A Protein STI-1; structur 98.8 2.6E-07 8.8E-12 75.1 15.1 97 197-296 15-111 (126)
122 2ifu_A Gamma-SNAP; membrane fu 98.8 3.1E-07 1.1E-11 88.1 18.0 202 138-357 29-253 (307)
123 2c2l_A CHIP, carboxy terminus 98.8 5.3E-08 1.8E-12 92.1 12.1 100 124-225 3-102 (281)
124 2qfc_A PLCR protein; TPR, HTH, 98.7 1.2E-06 4.2E-11 83.3 21.7 165 126-291 76-262 (293)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.8E-07 2E-11 80.9 18.3 131 126-261 7-151 (213)
126 4gco_A Protein STI-1; structur 98.7 4E-07 1.4E-11 73.9 15.0 97 127-225 15-111 (126)
127 1a17_A Serine/threonine protei 98.7 4.1E-07 1.4E-11 78.0 15.6 128 126-257 14-143 (166)
128 1a17_A Serine/threonine protei 98.7 6.3E-07 2.2E-11 76.8 16.7 127 197-327 15-143 (166)
129 2qfc_A PLCR protein; TPR, HTH, 98.7 2.3E-06 7.8E-11 81.4 21.4 168 197-364 77-265 (293)
130 1na0_A Designed protein CTPR3; 98.7 8.7E-07 3E-11 71.5 15.5 97 196-295 10-106 (125)
131 2c2l_A CHIP, carboxy terminus 98.7 1.2E-07 4.1E-12 89.5 11.6 193 159-364 3-198 (281)
132 3gw4_A Uncharacterized protein 98.7 2.5E-07 8.6E-12 82.5 13.0 156 172-328 4-174 (203)
133 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.7E-11 70.3 15.7 99 125-225 9-107 (125)
134 3gyz_A Chaperone protein IPGC; 98.6 3.2E-07 1.1E-11 76.9 12.0 96 197-295 38-133 (151)
135 4f3v_A ESX-1 secretion system 98.6 3.3E-07 1.1E-11 84.3 13.0 191 172-366 18-238 (282)
136 2lni_A Stress-induced-phosphop 98.6 8.4E-07 2.9E-11 72.7 14.2 100 124-225 15-114 (133)
137 3gyz_A Chaperone protein IPGC; 98.6 8.6E-07 2.9E-11 74.3 14.2 103 159-266 35-137 (151)
138 2lni_A Stress-induced-phosphop 98.6 8.9E-07 3E-11 72.5 14.2 116 159-278 15-130 (133)
139 2vyi_A SGTA protein; chaperone 98.6 9E-07 3.1E-11 72.2 13.9 118 125-246 12-129 (131)
140 2vyi_A SGTA protein; chaperone 98.6 1.3E-06 4.5E-11 71.1 14.8 115 197-315 14-128 (131)
141 4f3v_A ESX-1 secretion system 98.6 2.2E-06 7.6E-11 78.8 17.4 190 137-331 18-238 (282)
142 3gw4_A Uncharacterized protein 98.6 7.3E-07 2.5E-11 79.4 13.6 134 477-610 26-175 (203)
143 2vgx_A Chaperone SYCD; alterna 98.5 1.2E-06 4.2E-11 73.4 13.5 100 124-225 20-119 (148)
144 1p5q_A FKBP52, FK506-binding p 98.5 1.8E-06 6.1E-11 83.8 16.5 124 124-250 146-283 (336)
145 2vgx_A Chaperone SYCD; alterna 98.5 5.6E-07 1.9E-11 75.5 11.1 98 195-295 21-118 (148)
146 1p5q_A FKBP52, FK506-binding p 98.5 1.7E-06 5.9E-11 83.9 16.1 123 160-285 147-283 (336)
147 2e2e_A Formate-dependent nitri 98.5 7.7E-07 2.6E-11 77.4 12.1 118 138-259 23-143 (177)
148 2e2e_A Formate-dependent nitri 98.5 9.7E-07 3.3E-11 76.8 12.4 122 171-296 21-145 (177)
149 3dss_A Geranylgeranyl transfer 98.5 9E-05 3.1E-09 70.3 26.1 183 176-364 90-303 (331)
150 2fbn_A 70 kDa peptidylprolyl i 98.5 1.9E-07 6.6E-12 83.0 7.3 120 195-316 38-171 (198)
151 3upv_A Heat shock protein STI1 98.5 2.8E-06 9.4E-11 69.0 13.6 96 126-223 5-100 (126)
152 1elw_A TPR1-domain of HOP; HOP 98.5 7.9E-06 2.7E-10 64.9 15.7 97 196-295 5-101 (118)
153 3upv_A Heat shock protein STI1 98.5 3.9E-06 1.3E-10 68.0 14.0 95 197-294 6-100 (126)
154 3sz7_A HSC70 cochaperone (SGT) 98.4 3.2E-06 1.1E-10 72.3 13.7 102 124-227 10-111 (164)
155 1elw_A TPR1-domain of HOP; HOP 98.4 8.3E-06 2.9E-10 64.8 15.4 98 126-225 5-102 (118)
156 2xcb_A PCRH, regulatory protei 98.4 2.2E-06 7.7E-11 71.3 11.9 100 124-225 17-116 (142)
157 4gcn_A Protein STI-1; structur 98.4 4.3E-06 1.5E-10 67.9 13.3 53 168-221 16-68 (127)
158 3dss_A Geranylgeranyl transfer 98.4 0.00035 1.2E-08 66.2 27.5 219 105-331 46-305 (331)
159 4gcn_A Protein STI-1; structur 98.4 6.2E-06 2.1E-10 67.0 13.5 106 125-234 8-119 (127)
160 2fbn_A 70 kDa peptidylprolyl i 98.4 6.2E-06 2.1E-10 73.1 14.1 118 126-247 39-172 (198)
161 2kck_A TPR repeat; tetratricop 98.4 4.7E-06 1.6E-10 65.6 12.0 95 162-259 8-105 (112)
162 2xcb_A PCRH, regulatory protei 98.4 4.8E-06 1.6E-10 69.2 12.4 94 163-259 21-114 (142)
163 2dba_A Smooth muscle cell asso 98.4 1.7E-05 5.7E-10 66.2 15.9 101 123-226 26-130 (148)
164 3q49_B STIP1 homology and U bo 98.3 1.1E-05 3.8E-10 66.4 14.0 94 161-257 10-103 (137)
165 3q49_B STIP1 homology and U bo 98.3 7.8E-06 2.7E-10 67.3 12.7 102 122-225 6-107 (137)
166 2kck_A TPR repeat; tetratricop 98.3 5.6E-06 1.9E-10 65.2 11.3 98 195-295 6-106 (112)
167 4b4t_Q 26S proteasome regulato 98.3 2.9E-05 1E-09 78.4 19.5 197 168-364 12-244 (434)
168 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-05 4.2E-10 68.7 14.3 99 159-260 10-108 (164)
169 2dba_A Smooth muscle cell asso 98.3 2.5E-05 8.5E-10 65.1 15.8 98 159-260 27-128 (148)
170 4b4t_Q 26S proteasome regulato 98.3 3E-05 1E-09 78.3 19.1 197 414-610 11-244 (434)
171 1elr_A TPR2A-domain of HOP; HO 98.3 6.1E-06 2.1E-10 67.1 11.4 58 165-223 9-66 (131)
172 1hxi_A PEX5, peroxisome target 98.3 8E-06 2.7E-10 65.6 11.3 94 129-224 21-114 (121)
173 1elr_A TPR2A-domain of HOP; HO 98.3 8.2E-06 2.8E-10 66.3 11.6 111 125-239 4-120 (131)
174 1hxi_A PEX5, peroxisome target 98.3 7.3E-06 2.5E-10 65.8 10.8 92 165-259 22-113 (121)
175 3k9i_A BH0479 protein; putativ 98.2 2.1E-06 7E-11 68.7 6.4 87 138-225 3-91 (117)
176 2xev_A YBGF; tetratricopeptide 98.2 6.3E-05 2.1E-09 60.9 14.8 94 130-225 7-106 (129)
177 1wao_1 Serine/threonine protei 98.2 1.2E-05 4E-10 82.0 12.6 89 134-224 15-103 (477)
178 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4.1E-10 68.2 10.7 62 197-258 51-116 (164)
179 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.2E-10 67.5 11.1 135 125-259 9-157 (164)
180 2xev_A YBGF; tetratricopeptide 98.1 8.7E-05 3E-09 60.0 14.9 92 167-259 9-104 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.3E-05 1.1E-09 78.3 14.6 89 195-286 317-405 (457)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4E-05 1.4E-09 77.7 14.6 133 194-328 267-413 (457)
183 1ihg_A Cyclophilin 40; ppiase 98.1 3.6E-05 1.2E-09 75.5 13.7 139 126-287 224-362 (370)
184 1dce_A Protein (RAB geranylger 98.1 0.00026 9E-09 73.4 20.6 172 175-352 44-242 (567)
185 1wao_1 Serine/threonine protei 98.1 1.6E-05 5.4E-10 81.1 11.1 122 165-290 11-134 (477)
186 1ihg_A Cyclophilin 40; ppiase 98.0 4.8E-05 1.6E-09 74.6 13.5 138 196-356 224-361 (370)
187 3k9i_A BH0479 protein; putativ 98.0 1E-05 3.5E-10 64.5 7.2 87 172-260 2-90 (117)
188 2hr2_A Hypothetical protein; a 98.0 6E-05 2.1E-09 62.4 11.9 93 165-259 16-130 (159)
189 3rkv_A Putative peptidylprolyl 98.0 6.3E-05 2.1E-09 64.0 12.6 100 125-225 11-127 (162)
190 3rkv_A Putative peptidylprolyl 98.0 7.7E-05 2.6E-09 63.4 12.5 98 161-260 12-126 (162)
191 1dce_A Protein (RAB geranylger 98.0 0.00066 2.3E-08 70.4 21.3 172 459-635 46-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 2.5E-05 8.6E-10 75.7 9.2 150 125-296 179-329 (338)
193 2hr2_A Hypothetical protein; a 97.9 0.00015 5.2E-09 60.0 12.2 100 125-225 11-132 (159)
194 2if4_A ATFKBP42; FKBP-like, al 97.9 3.6E-05 1.2E-09 74.6 9.6 147 196-364 180-327 (338)
195 1klx_A Cysteine rich protein B 97.9 0.0004 1.4E-08 57.0 14.5 82 243-330 37-126 (138)
196 3n71_A Histone lysine methyltr 97.8 7.9E-05 2.7E-09 75.4 11.3 124 171-294 320-463 (490)
197 1klx_A Cysteine rich protein B 97.8 0.00083 2.8E-08 55.0 14.8 81 525-611 38-126 (138)
198 3n71_A Histone lysine methyltr 97.8 0.00015 5.3E-09 73.3 12.1 89 205-293 319-420 (490)
199 2l6j_A TPR repeat-containing p 97.7 4.7E-05 1.6E-09 59.7 6.2 63 162-225 6-68 (111)
200 2kat_A Uncharacterized protein 97.7 0.00016 5.6E-09 57.1 9.4 78 144-223 4-81 (115)
201 1zu2_A Mitochondrial import re 97.7 0.0001 3.5E-09 60.9 7.3 84 174-260 16-120 (158)
202 1na3_A Designed protein CTPR2; 97.6 0.00046 1.6E-08 51.5 10.4 61 163-224 12-72 (91)
203 3ma5_A Tetratricopeptide repea 97.6 0.00015 5E-09 55.7 7.6 64 159-223 6-69 (100)
204 2kat_A Uncharacterized protein 97.6 0.00045 1.5E-08 54.5 10.1 79 178-259 3-81 (115)
205 2l6j_A TPR repeat-containing p 97.6 0.00055 1.9E-08 53.3 10.5 88 511-601 3-97 (111)
206 1zu2_A Mitochondrial import re 97.6 0.00018 6.2E-09 59.4 7.6 99 136-239 13-132 (158)
207 1na3_A Designed protein CTPR2; 97.6 0.00063 2.2E-08 50.7 10.3 82 194-278 8-89 (91)
208 3ma5_A Tetratricopeptide repea 97.2 0.0016 5.6E-08 49.7 8.8 64 194-259 6-69 (100)
209 3ly7_A Transcriptional activat 96.9 0.0097 3.3E-07 56.6 12.5 65 264-330 275-339 (372)
210 3ly7_A Transcriptional activat 96.9 0.076 2.6E-06 50.5 18.2 75 298-376 274-348 (372)
211 3qww_A SET and MYND domain-con 96.9 0.0061 2.1E-07 60.5 11.4 84 526-609 312-409 (433)
212 3bee_A Putative YFRE protein; 96.9 0.017 5.8E-07 43.1 11.2 69 157-226 3-74 (93)
213 3u64_A Protein TP_0956; tetrat 96.7 0.091 3.1E-06 47.9 16.4 93 247-341 179-282 (301)
214 3qww_A SET and MYND domain-con 96.7 0.0084 2.9E-07 59.5 10.7 87 489-575 310-410 (433)
215 3qwp_A SET and MYND domain-con 96.7 0.02 7E-07 56.8 13.4 92 519-610 294-399 (429)
216 2kc7_A BFR218_protein; tetratr 96.6 0.012 4.2E-07 44.3 9.4 60 166-226 6-66 (99)
217 3u64_A Protein TP_0956; tetrat 96.5 0.25 8.5E-06 45.0 18.3 94 528-623 179-283 (301)
218 3qwp_A SET and MYND domain-con 96.5 0.0072 2.5E-07 60.1 9.2 90 170-259 297-399 (429)
219 2kc7_A BFR218_protein; tetratr 96.5 0.0074 2.5E-07 45.6 7.4 58 201-260 6-64 (99)
220 1wy6_A Hypothetical protein ST 96.5 0.22 7.4E-06 39.0 15.3 67 546-613 90-156 (172)
221 3mkq_A Coatomer beta'-subunit; 96.2 0.07 2.4E-06 58.4 15.9 27 477-503 681-707 (814)
222 3mkq_A Coatomer beta'-subunit; 96.2 0.13 4.6E-06 56.2 18.1 154 133-326 607-761 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.2 0.046 1.6E-06 41.8 10.2 67 159-225 4-76 (104)
224 1pc2_A Mitochondria fission pr 96.2 0.031 1.1E-06 45.5 9.3 84 142-226 15-102 (152)
225 1pc2_A Mitochondria fission pr 96.2 0.068 2.3E-06 43.5 11.2 90 282-375 14-108 (152)
226 3bee_A Putative YFRE protein; 96.1 0.069 2.4E-06 39.7 10.3 64 546-610 5-71 (93)
227 3mkq_B Coatomer subunit alpha; 96.0 0.58 2E-05 39.1 16.3 98 417-535 15-112 (177)
228 3mkq_B Coatomer subunit alpha; 95.7 0.47 1.6E-05 39.7 14.6 100 170-291 15-114 (177)
229 2v5f_A Prolyl 4-hydroxylase su 95.6 0.15 5E-06 38.8 10.6 68 193-260 3-75 (104)
230 4h7y_A Dual specificity protei 94.8 0.46 1.6E-05 38.2 11.1 103 194-299 12-127 (161)
231 4h7y_A Dual specificity protei 94.7 0.42 1.4E-05 38.4 10.7 103 122-226 10-125 (161)
232 3lvg_A Clathrin heavy chain 1; 94.7 6E-06 2E-10 79.6 -20.1 204 124-349 53-276 (624)
233 1nzn_A CGI-135 protein, fissio 94.6 0.3 1E-05 38.2 9.5 84 142-226 18-105 (126)
234 1nzn_A CGI-135 protein, fissio 94.5 0.46 1.6E-05 37.1 10.5 83 281-364 16-102 (126)
235 1wy6_A Hypothetical protein ST 93.4 2.3 7.7E-05 33.4 16.2 65 267-332 92-156 (172)
236 4ady_A RPN2, 26S proteasome re 93.3 11 0.00037 40.9 39.5 277 345-631 383-675 (963)
237 1v54_E Cytochrome C oxidase po 93.1 1.3 4.4E-05 32.6 9.7 65 562-627 25-89 (109)
238 3lpz_A GET4 (YOR164C homolog); 92.7 6.5 0.00022 36.7 21.0 166 234-434 38-214 (336)
239 4b4t_P 26S proteasome regulato 92.1 10 0.00034 37.6 19.5 41 350-390 30-75 (445)
240 4fhn_B Nucleoporin NUP120; pro 91.5 5.1 0.00017 45.4 17.5 131 232-364 900-1049(1139)
241 4b4t_P 26S proteasome regulato 91.4 12 0.00041 37.0 19.2 171 404-575 53-246 (445)
242 3ffl_A Anaphase-promoting comp 91.1 0.9 3.1E-05 37.3 7.9 26 197-222 65-90 (167)
243 2y69_E Cytochrome C oxidase su 91.1 2.4 8.4E-05 33.1 9.7 65 562-627 68-132 (152)
244 4fhn_B Nucleoporin NUP120; pro 91.1 8.2 0.00028 43.7 18.7 168 166-356 818-991 (1139)
245 2ff4_A Probable regulatory pro 90.6 1.9 6.4E-05 42.0 11.4 69 198-268 174-247 (388)
246 3o48_A Mitochondria fission 1 90.0 3.3 0.00011 32.5 9.9 69 157-225 37-108 (134)
247 4ady_A RPN2, 26S proteasome re 90.0 24 0.00084 38.2 36.8 27 162-188 232-258 (963)
248 4gns_B Protein CSD3, chitin bi 89.8 5.4 0.00018 42.2 14.5 53 520-573 345-397 (754)
249 4gns_B Protein CSD3, chitin bi 89.7 1.7 5.8E-05 45.9 10.7 86 509-596 610-708 (754)
250 1y8m_A FIS1; mitochondria, unk 89.1 7.4 0.00025 31.0 11.7 69 157-225 36-107 (144)
251 2wpv_A GET4, UPF0363 protein Y 88.4 16 0.00054 33.9 20.0 166 234-434 36-215 (312)
252 3txn_A 26S proteasome regulato 88.4 19 0.00064 34.8 17.1 118 105-222 79-208 (394)
253 1v54_E Cytochrome C oxidase po 88.2 2.4 8.1E-05 31.2 7.3 63 140-203 25-87 (109)
254 3lvg_A Clathrin heavy chain 1; 88.1 4.6E-05 1.6E-09 73.7 -22.4 263 197-498 56-325 (624)
255 2ff4_A Probable regulatory pro 88.0 3.6 0.00012 40.0 11.2 55 166-221 177-231 (388)
256 3o48_A Mitochondria fission 1 87.5 7.4 0.00025 30.5 10.3 65 545-609 38-105 (134)
257 2p58_C Putative type III secre 84.4 8.3 0.00028 28.3 8.3 78 527-612 22-99 (116)
258 2wpv_A GET4, UPF0363 protein Y 83.6 28 0.00095 32.3 21.5 82 440-540 132-216 (312)
259 2y69_E Cytochrome C oxidase su 83.5 4.8 0.00016 31.5 7.3 60 143-203 71-130 (152)
260 3ffl_A Anaphase-promoting comp 83.2 8.3 0.00028 31.6 9.1 133 126-274 21-163 (167)
261 2uwj_G Type III export protein 82.4 8 0.00027 28.3 7.6 78 527-612 21-98 (115)
262 1zbp_A Hypothetical protein VP 80.0 33 0.0011 30.8 13.4 116 309-436 5-129 (273)
263 1y8m_A FIS1; mitochondria, unk 79.8 21 0.00073 28.4 15.0 76 298-375 36-114 (144)
264 1zbp_A Hypothetical protein VP 78.9 12 0.00041 33.6 9.4 55 416-471 6-60 (273)
265 4b4t_R RPN7, 26S proteasome re 78.4 18 0.00062 35.5 11.8 61 479-539 133-195 (429)
266 3lpz_A GET4 (YOR164C homolog); 78.2 44 0.0015 31.2 23.7 83 439-540 133-215 (336)
267 3esl_A Checkpoint serine/threo 78.0 23 0.0008 30.1 10.5 54 211-264 95-148 (202)
268 3txn_A 26S proteasome regulato 77.9 51 0.0018 31.7 21.7 159 412-574 104-282 (394)
269 4b4t_R RPN7, 26S proteasome re 77.2 13 0.00046 36.5 10.5 61 162-222 133-195 (429)
270 3esl_A Checkpoint serine/threo 71.7 36 0.0012 28.9 10.0 71 229-299 75-148 (202)
271 3ltm_A Alpha-REP4; protein eng 69.3 53 0.0018 28.0 18.4 141 124-281 32-172 (211)
272 4a1g_A Mitotic checkpoint seri 67.8 47 0.0016 26.8 9.8 51 214-264 84-134 (152)
273 3ltm_A Alpha-REP4; protein eng 66.2 61 0.0021 27.6 18.4 155 157-329 30-184 (211)
274 2wvi_A Mitotic checkpoint seri 61.8 65 0.0022 26.4 9.9 51 214-264 79-129 (164)
275 2p58_C Putative type III secre 61.0 47 0.0016 24.5 8.3 9 107-115 25-33 (116)
276 1bpo_A Protein (clathrin); cla 58.5 91 0.0031 30.5 11.2 94 91-189 331-424 (494)
277 4a1g_A Mitotic checkpoint seri 56.0 79 0.0027 25.5 9.6 51 249-299 83-134 (152)
278 3eiq_C Programmed cell death p 49.9 1.7E+02 0.0059 27.6 12.4 65 550-615 220-286 (358)
279 2wvi_A Mitotic checkpoint seri 49.7 1.1E+02 0.0036 25.1 9.5 51 249-299 78-129 (164)
280 4aez_C MAD3, mitotic spindle c 48.0 35 0.0012 29.6 5.9 52 213-264 132-183 (223)
281 1wdy_A 2-5A-dependent ribonucl 46.3 34 0.0012 30.7 6.4 17 132-148 9-25 (285)
282 2d2s_A Exocyst complex compone 44.6 1.4E+02 0.005 26.1 9.6 24 130-153 23-46 (235)
283 1wdy_A 2-5A-dependent ribonucl 44.2 44 0.0015 29.9 6.8 50 522-571 189-240 (285)
284 2d2s_A Exocyst complex compone 43.8 1.5E+02 0.0052 25.9 9.6 29 300-328 90-118 (235)
285 2r9g_A AAA ATPase, central reg 43.2 1.5E+02 0.0052 25.1 9.8 36 244-280 27-62 (204)
286 4aez_C MAD3, mitotic spindle c 39.3 1.2E+02 0.0041 26.3 7.9 52 248-299 131-183 (223)
287 3ltj_A Alpharep-4; protein eng 38.4 1.7E+02 0.0059 24.3 18.4 121 194-328 58-178 (201)
288 3bge_A Predicted ATPase; struc 37.3 1.8E+02 0.006 24.6 8.3 21 245-265 21-41 (201)
289 1qsa_A Protein (soluble lytic 36.2 3.8E+02 0.013 27.6 38.0 79 161-246 73-151 (618)
290 3t8k_A Uncharacterized protein 34.3 1.7E+02 0.0057 24.3 8.3 65 307-371 41-109 (186)
291 2r9g_A AAA ATPase, central reg 33.7 2.2E+02 0.0075 24.1 8.9 11 392-402 34-44 (204)
292 1k1a_A B-cell lymphoma 3-encod 33.2 63 0.0022 28.0 5.8 20 242-261 17-36 (241)
293 1k1a_A B-cell lymphoma 3-encod 33.0 84 0.0029 27.2 6.6 24 202-225 13-36 (241)
294 2qx5_A Nucleoporin NIC96; mRNA 32.9 4.4E+02 0.015 27.4 13.7 25 126-151 154-178 (661)
295 2xig_A Ferric uptake regulatio 32.1 1.8E+02 0.0063 23.1 7.8 59 292-351 18-76 (150)
296 4gq2_M Nucleoporin NUP120; bet 31.2 3.9E+02 0.013 29.3 12.5 48 584-631 899-950 (950)
297 3ctd_A Putative ATPase, AAA fa 30.9 2.5E+02 0.0086 24.0 9.0 32 245-276 49-80 (213)
298 3eiq_C Programmed cell death p 30.3 3.5E+02 0.012 25.5 13.1 65 480-545 220-286 (358)
299 1ug3_A EIF4GI, eukaryotic prot 29.1 2.9E+02 0.0098 25.8 9.7 233 339-594 14-256 (339)
300 3mv2_A Coatomer subunit alpha; 28.8 3.5E+02 0.012 25.0 12.2 70 562-631 185-257 (325)
301 3ltj_A Alpharep-4; protein eng 28.4 2.5E+02 0.0087 23.2 19.0 168 124-312 27-194 (201)
302 2zu6_B Programmed cell death p 27.9 2.9E+02 0.01 25.3 9.2 215 409-627 5-247 (307)
303 2ion_A PDCD4, programmed cell 27.1 2.4E+02 0.0083 22.6 7.9 22 271-292 14-35 (152)
304 2fu4_A Ferric uptake regulatio 26.8 1.6E+02 0.0054 20.3 5.9 34 598-631 33-66 (83)
305 3bge_A Predicted ATPase; struc 26.8 2.5E+02 0.0084 23.7 7.5 19 350-368 21-39 (201)
306 4ets_A Ferric uptake regulatio 26.8 1.3E+02 0.0045 24.5 6.0 14 246-259 47-60 (162)
307 2fe3_A Peroxide operon regulat 26.7 1.8E+02 0.006 23.1 6.7 58 292-350 13-70 (145)
308 4ets_A Ferric uptake regulatio 26.4 1.2E+02 0.004 24.7 5.7 47 164-210 36-84 (162)
309 3ctd_A Putative ATPase, AAA fa 26.3 3.1E+02 0.01 23.4 8.3 17 350-366 49-65 (213)
310 4b4t_S RPN3, 26S proteasome re 26.2 5E+02 0.017 25.9 11.9 66 160-225 231-300 (523)
311 2fe3_A Peroxide operon regulat 25.6 2E+02 0.0068 22.7 6.8 59 538-597 13-71 (145)
312 3t8k_A Uncharacterized protein 25.1 2.9E+02 0.0099 22.8 8.5 130 485-614 43-183 (186)
313 4gq2_M Nucleoporin NUP120; bet 25.0 7.1E+02 0.024 27.3 15.3 49 232-280 898-950 (950)
314 1n11_A Ankyrin; clathrin, BAND 24.9 1.7E+02 0.0059 28.3 7.8 16 274-289 118-133 (437)
315 3bu8_A Telomeric repeat-bindin 24.6 2.4E+02 0.008 24.2 7.0 77 176-254 88-171 (235)
316 4g8k_A 2-5A-dependent ribonucl 24.5 2.8E+02 0.0097 25.4 9.0 39 502-547 291-329 (337)
317 2nsz_A Programmed cell death p 24.0 2.5E+02 0.0086 21.7 9.3 99 270-369 11-119 (129)
318 3f3f_C Nucleoporin NUP85; stru 23.9 2.5E+02 0.0085 28.4 8.3 72 176-250 497-568 (570)
319 1oyz_A Hypothetical protein YI 23.3 3.9E+02 0.013 23.6 24.0 145 158-316 66-221 (280)
320 3eyy_A Putative iron uptake re 23.1 1.9E+02 0.0064 22.9 6.2 33 177-209 34-66 (145)
321 1mzb_A Ferric uptake regulatio 22.9 1.8E+02 0.0062 22.6 6.1 43 308-350 24-67 (136)
322 2ion_A PDCD4, programmed cell 22.8 3E+02 0.01 22.1 8.3 21 201-221 15-35 (152)
323 3eu9_A Huntingtin-interacting 22.8 1E+02 0.0036 26.4 5.2 52 554-609 181-234 (240)
324 1mzb_A Ferric uptake regulatio 22.4 2.1E+02 0.0072 22.3 6.3 58 538-596 9-67 (136)
325 2xgv_A PSIV capsid N-terminal 22.3 2E+02 0.0067 22.6 5.6 55 58-113 15-70 (142)
326 3eyy_A Putative iron uptake re 21.8 1.6E+02 0.0055 23.3 5.5 57 292-350 10-66 (145)
327 2fu4_A Ferric uptake regulatio 21.0 2.1E+02 0.0071 19.6 5.9 11 285-295 36-46 (83)
328 2w57_A Ferric uptake regulatio 20.9 2.1E+02 0.007 22.8 6.1 59 292-351 8-67 (150)
329 2b7e_A PRE-mRNA processing pro 20.7 59 0.002 21.2 2.1 29 212-241 3-31 (59)
330 2xde_A GAG polyprotein, HIV-1 20.3 2.7E+02 0.0093 21.9 6.0 55 58-113 17-71 (145)
331 2o03_A Probable zinc uptake re 20.3 1.5E+02 0.0051 23.0 5.0 42 133-174 18-59 (131)
332 4b4t_S RPN3, 26S proteasome re 20.0 6.6E+02 0.023 25.1 12.4 65 125-189 231-299 (523)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-41 Score=357.93 Aligned_cols=490 Identities=10% Similarity=-0.012 Sum_probs=419.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
++...|+.++..+.+.|++++|..+++++.. ..|+..++..++.+|.+.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4778999999999999999999999999986 5678899999999999999999999999998654 67899999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC--------------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEG--------------NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
.+|.+.|++++|+++|+++.... ...++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999643322 011358899999999999999999999999999864 235666
Q ss_pred HHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006624 269 YTTLVSIYFKLGEVEKALG--L-VQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~--~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 345 (638)
+..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 7777666554443332221 1 555555555556677888899999999999999999999876 4799999999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 346 LGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425 (638)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 425 (638)
|.+.|++++|.++|+++.+.+. .+..+++.++..+...|+..++ ..+++.+.... +.+..++..++..|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKL-YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHH-HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999987653 3778899999999999999888 88888887543 5578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 677889999999999999999999999999986 456789999999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006624 506 LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 506 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457889999999999999999999999999876 66787 7899999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.+..+|..++.+|.+.|++++|.++++++.+.. +-+...+..+...|
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 478999999999999999999999999999752 33455666665554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=349.29 Aligned_cols=465 Identities=12% Similarity=0.020 Sum_probs=403.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.++...++.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+++.... ++..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 155 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACRYL 155 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHHHH
Confidence 357788999999999999999999999999864 5788999999999999999999999999986542 78999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKEN---------------GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
++..|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|+++|++|.+.++. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 999999999999999999953221 23446889999999999999999999999999987654 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHH--H-HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006624 302 YTYTELIKGLGRAGRVEDAYG--L-FMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
..+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 677777665554443332221 1 555555555556667888899999999999999999999775 58999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 006624 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
..+.+.|+..++ ..+|+++...+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++
T Consensus 313 ~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 313 DTLFVRSRFIDV-LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHTTCHHHH-HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHH-HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 999999999888 88889888764 3477889999999999999999999999999765 77899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006624 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (638)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999886 45678899999999999999999999999998864 457889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9864 347899999999999999999999999999875 66787 7899999999999999999999999999764
Q ss_pred CCCCHhhHHHHHHHHhccCCccCC
Q 006624 613 FEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
+.+..+|..+..+|.+.|++++|
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHH
Confidence 55888999999999999998765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=6.8e-28 Score=242.93 Aligned_cols=362 Identities=14% Similarity=0.089 Sum_probs=199.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..++.++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445556666666666666665542 3444555556666666666666666666665543 23556666666666666666
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++....+ .+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666665543 344556666666666666666666666666542 12344455555566666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
+.+..+. +..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++.....
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 6554332 4555555666666666666666666665554332 44455555555555555555555554443311
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 451 (638)
+.+..++..+..++.+.|++++|...++++.+.+ +.++.++..++..
T Consensus 234 --------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 234 --------------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred --------------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 1123444555555566666666666666665543 4445555555555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 006624 452 YGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDA 531 (638)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 531 (638)
+.+.|++++|.+.++++.+. .+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555554 23444555555555555555555555555554431 22344445555555555555555
Q ss_pred HHHHHHHHH
Q 006624 532 YSLLRRMEE 540 (638)
Q Consensus 532 ~~~~~~~~~ 540 (638)
.+.|+++.+
T Consensus 359 ~~~~~~a~~ 367 (388)
T 1w3b_A 359 LMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=7.2e-28 Score=242.71 Aligned_cols=361 Identities=15% Similarity=0.087 Sum_probs=173.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..+.+.|++++|...+.++.+..+. +...+..+...+.+.|++++|...++...+..+ .+..+|..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCH
Confidence 3444555555555555555444221 344444455555555555555555555555443 3445555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
++|++.|+++.+.. +.+..+|..++.++.+.|++++|.+.++++.+.++. +...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555432 123334555555555555555555555555444322 3334444444444455555555555554
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH
Q 006624 328 LKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP 407 (638)
Q Consensus 328 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 407 (638)
.+..+. +..++..+...+.+.|++++|...|+++.+.+ +.+.
T Consensus 162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------------p~~~ 203 (388)
T 1w3b_A 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------------------------------------PNFL 203 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------------------------TTCH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------------------------CCcH
Confidence 443221 34444444444444454444444444443311 1122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHF 487 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 487 (638)
..|..+...+...|++++|...+++..+.. |.+..++..++ ..|
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~-----------------------------------~~~ 247 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA-----------------------------------CVY 247 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH-----------------------------------HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH-----------------------------------HHH
Confidence 233344444455555555555555544432 33344444444 444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 488 GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
...|++++|...|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..++..+.+.|++++|.
T Consensus 248 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555555444432 1223445555555555555555555555555432 234455555555555555555555
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+.++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+
T Consensus 326 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 326 RLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555321 12344555555555555555555555555553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-30 Score=267.03 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 390 EASAWFEKMKANGVLPSPF-TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLEL 468 (638)
Q Consensus 390 a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 468 (638)
.++.+.+.+.+.+..+.+. .++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+..+++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3344444454444433322 34455555555555555555555555555555555555555555544321000
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006624 469 KEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN 548 (638)
Q Consensus 469 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 548 (638)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 0112245666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
||+.+|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++.|++++|.+++++|.+.|..|+..||+.|++.+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred c
Q 006624 629 K 629 (638)
Q Consensus 629 ~ 629 (638)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 4
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.7e-30 Score=262.49 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 006624 353 EDALKLFNKMEALQCKPNV-VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR--------- 422 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 422 (638)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|+..+| ..+|++|.+.|+.||..||+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A-~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEA-LRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4455666777777765543 4688899999999999888 9999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK 559 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 559 (638)
|.+.|+.||..||++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555444443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9e-24 Score=221.36 Aligned_cols=440 Identities=9% Similarity=-0.038 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|......+.+.|++++|+..|++++... |++.++..++.++.+.|++++|...|+++.+.++. +..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4567778888889999999999999988854 68888888999999999999999999988877533 67888888899
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.|++++|+..|+++...++ ++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999888765 45455555555544443333344433333222211211111110000000111111
Q ss_pred HHHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCC--------CCHHHH
Q 006624 285 ALGLVQEMKGKGC---------ALTVYTYTELIKGLGR---AGRVEDAYGLFMNMLK-----EGCK--------PDIVLI 339 (638)
Q Consensus 285 A~~~~~~m~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~--------p~~~~~ 339 (638)
...+...+..... +.+...+......+.. .|++++|...|+++.+ ..-. .+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111110 1123344444444443 6777777777777776 2111 124456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
..+...+...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+...+..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEY-YNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTG-GGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHH-HHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 667777777777777777777776644 3355555666666666666555 55555555442 2345567777777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888877765 556677777778888888888888888887765 344566777777788888888888888
Q ss_pred HHHHHhCCC-CCC----HhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 500 FNEMKKLRC-KPD----VYTYNALMSGMVR---AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 500 ~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 877765321 111 2367777777777 788888888888777653 2356677777778888888888888888
Q ss_pred HhhhC
Q 006624 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
++.+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77764
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.8e-24 Score=222.27 Aligned_cols=445 Identities=11% Similarity=-0.014 Sum_probs=331.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+......+.+.|++++|+..|+++.+.+ |+..+|..++.++.+.|++++|++.|+++.+.++ .+...+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHH
Confidence 3466777889999999999999999998874 6899999999999999999999999999998775 67789999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
++.+.|++++|...|+++.+.+ +++......++..+.+......+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999875 345555556666655554444554444433333222222211111111111111111
Q ss_pred HHHHHHHHHHcCC---------CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----CCCCC--------CHhHH
Q 006624 320 AYGLFMNMLKEGC---------KPDIVLINNLINVLGR---AGRLEDALKLFNKMEA-----LQCKP--------NVVTY 374 (638)
Q Consensus 320 A~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~~p--------~~~~~ 374 (638)
...+...+..... +.+...+......+.. .|++++|...++++.+ ....| +...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1124555555555554 8999999999999987 42122 34567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 006624 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
..+...+...|+..++ ...++.+.... |+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A-~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGA-HEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHH-HHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHH-HHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 7777788888888887 77778877754 338888999999999999999999999999875 6778899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 455 AKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKEL-DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHT-CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999986 44567889999999999999999999999998753 34567888999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 535 LRRMEEDGCV-PD----INSHNIILNGLAK---SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 535 ~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999874211 11 3488899999999 999999999999998753 2367888999999999999999999999
Q ss_pred HHHhCCCCCCHh
Q 006624 607 DMNAKGFEYDQI 618 (638)
Q Consensus 607 ~m~~~~~~p~~~ 618 (638)
++.+. .|+..
T Consensus 474 ~a~~~--~~~~~ 483 (514)
T 2gw1_A 474 ESADL--ARTME 483 (514)
T ss_dssp HHHHH--CSSHH
T ss_pred HHHHh--ccccH
Confidence 99864 45543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.2e-22 Score=206.89 Aligned_cols=302 Identities=11% Similarity=0.092 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..++..+.+.|++++|++.|+++....+ .+...+..++..+...|++++|.+.|+++.+.+ +.+..++..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 344455555555555555555555555554433 344455555555555555555555555555442 22344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTV---YTYTEL------------IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
..|.+.|++++|.+.|+++.+.++. +. ..+..+ ...+...|++++|...|+++.+... .+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 5555555555555555555544321 22 233333 3335566666666666666665532 25556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (638)
+..++.+|.+.|++++|.+.|+++.+.. +.+..++..++.+|.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------------------------~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-------------------------------------NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-------------------------------------CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHH
Confidence 6666666666666666666666554311 223445555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCc----HHHHHH
Q 006624 419 KTNRVEKAHLLLEEMEEKGFPPCPAAYCSL------------INGYGKAKRYEAANELFLELKEYCGCSS----ARVYAV 482 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 482 (638)
..|++++|...++++.+.. +.+...+..+ +..+.+.|++++|...|+++.+... .+ ...+..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchHHHHHHHHH
Confidence 6666666666666666543 3333333333 4444455555555555555544311 11 224444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455555555555555555544331 22344455555555555555555555555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.2e-22 Score=205.70 Aligned_cols=338 Identities=9% Similarity=0.025 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+|..++..+.+.|++++|+..|+.++... +.+..++..++.++.+.|++++|...|+++.+.++. +..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 44455555555555555555555555554431 334445555555555555555555555555444322 3445555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+|.+.|++++|.+.|+++....+ .+. ..+..++..+.. ..+..+...+.+.|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 55555555555555555554332 222 233333222110 11223355588899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++++|++.++++.+..+. +...+..++..|.+.|++++|...|+++.+... .+..++..++..|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999887554 788899999999999999999999999988643 378899999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
.+.... |+.......+..+ . ....+..+...+.+.|++++|...|+++.+.. +.
T Consensus 236 ~~~~~~--p~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~ 289 (450)
T 2y4t_A 236 ECLKLD--QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS 289 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CS
T ss_pred HHHHhC--CChHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc
Confidence 997643 5444332222111 0 11223446788899999999999999998864 33
Q ss_pred C----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhH
Q 006624 441 C----PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTY 515 (638)
Q Consensus 441 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 515 (638)
+ ...+..++..+.+.|++++|...++.+.+. .+.+..+|..+..+|...|++++|...|+++.+. .|+ ...+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 366 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIR 366 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHH
Confidence 3 347888899999999999999999999886 4557889999999999999999999999999885 354 4455
Q ss_pred HHHH
Q 006624 516 NALM 519 (638)
Q Consensus 516 ~~l~ 519 (638)
..+.
T Consensus 367 ~~l~ 370 (450)
T 2y4t_A 367 EGLE 370 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.5e-22 Score=209.67 Aligned_cols=434 Identities=12% Similarity=0.044 Sum_probs=311.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|+++++.. +.++.++..+..+|.+.|++++|+..|+++.+.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4577888999999999999999999998864 667889999999999999999999999999887543 78899999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
+...|++++|++.|+ .....+ +. ....+..+...+...+|...++++.+.. ..+........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~---~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG---DF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC---CC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 444332 21 1222444555566678888888886531 001111123334445566666
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCALTV-YTYTELIKGLGR--------AGRVEDAYGLFMNMLKEGCKPD-------IVLINNLINVL 346 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~ 346 (638)
+.+...+...... .+.. .....+...+.. .|++++|..+|+++.+..+. + ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 6665554433322 1221 122233322222 24788888888888876433 2 23466667778
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKA 426 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 426 (638)
...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+..++..+...+...|++++|
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEF-FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHH-HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHH-HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 88888899998888887754 5566777777777777777777 66666666543 34677888889999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 427 HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
...++++.+.. +.+..++..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...|+++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999988875 666788889999999999999999999999886 4556778888999999999999999999988654
Q ss_pred C-----CCCCHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 507 R-----CKPDVYTYNALMSGMVRA----------GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 507 ~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
. .......+..+...+... |++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 011122234445667777 99999999999998863 3367888889999999999999999999
Q ss_pred HhhhC
Q 006624 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+..+.
T Consensus 487 ~al~~ 491 (537)
T 3fp2_A 487 DSAIL 491 (537)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.4e-22 Score=211.81 Aligned_cols=429 Identities=13% Similarity=0.061 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+..+...+.+.|++++|+..|+++.+..+. +..+|..+..+|.+.|++++|++.|+++...++ .+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 456778888999999999999999999887543 889999999999999999999999999998876 67888999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHh
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG------CALTVYTYTELIKGLGR 313 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~ 313 (638)
.+...|++++|.+.|+ .... .|+ .....+..+...+...+|...++++.... ..|+... +..+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHH
Confidence 9999999999999996 3332 222 22223445566666788999998886542 2233333 334555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc--------cCCHHHHHHHHHHHHHCCCCCC--------HhHHHH
Q 006624 314 AGRVEDAYGLFMNMLKEGCKPDIV-LINNLINVLGR--------AGRLEDALKLFNKMEALQCKPN--------VVTYNT 376 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 376 (638)
..+.+.+...+...... .+... ....+...+.. .|++++|..+++.+.+.. |+ ...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY 248 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH
Confidence 66666665554433322 22222 33333333332 257899999999998754 44 224555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 006624 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 377 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
+...+...++..++ ...++..... .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 249 ~g~~~~~~~~~~~A-~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 249 TGIFHFLKNNLLDA-QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHTTCHHHH-HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccHHHH-HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 55667777887777 7777887775 4568889999999999999999999999999876 778899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006624 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR 536 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (638)
++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+
T Consensus 325 ~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSL-NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHH-CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999987 34567889999999999999999999999998864 4456788999999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 537 RMEEDG-----CVPDINSHNIILNGLAKS----------GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601 (638)
Q Consensus 537 ~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 601 (638)
++.+.. .......+..+...+... |++++|...|+++.+.. +.+...+..+..+|.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 988642 111233345556777787 99999999999998753 23678899999999999999999
Q ss_pred HHHHHHHHhC
Q 006624 602 ARLMKDMNAK 611 (638)
Q Consensus 602 ~~~~~~m~~~ 611 (638)
.+.+++..+.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5.5e-19 Score=175.43 Aligned_cols=325 Identities=9% Similarity=0.036 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
+..|..+...+.+.|++++|...++.+++.. +.++.++..+...+...|++++|...|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555555555566666666555555532 334555555555555555555555555555544221 44555555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFP---D-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+...|++++|.+.|+++.+.. | + ...+..+..... ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 555555555555555555543 2 1 111111111000 111223467788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888877554 778888888888889999999999988887643 377888888888999999999999988
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
...+.. |+...... .+..+. .......+...+.+.|++++|...++++.+.. +.
T Consensus 213 ~a~~~~--~~~~~~~~-----------------~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 266 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFA-----------------HYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS 266 (359)
T ss_dssp HHHHHC--TTCHHHHH-----------------HHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS
T ss_pred HHHhhC--ccchHHHH-----------------HHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 887643 33222111 111111 11223334667788888999988888888764 33
Q ss_pred CHh----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 441 CPA----AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 441 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
+.. .+..+...+.+.|++++|.+.++.+.+. .+.+..++..+...|...|++++|...|++..+.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332 2444566667777777777777777665 3345666666666666666666666666666654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.1e-18 Score=173.32 Aligned_cols=329 Identities=9% Similarity=0.033 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|++.|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3444444555555555555555555544433 334445555555555555555555555554432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCA--LTVYTYT------------ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+...|++++|.+.++++.+..+. .+...+. .+...+...|++++|...++++.+..+ .+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 55555555555555555544220 0222222 224555566666666666666665533 24555556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-------------------------------------SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-------------------------------------SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHHHcC
Confidence 6666666666666666665554421 123344555566666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...+++..+.. +.+...+..+... . .......+...+.+.|++++|...++
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666543 3333322211100 0 01112233555666777777777777
Q ss_pred HHHhCCCCCC-H----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006624 502 EMKKLRCKPD-V----YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 502 ~m~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
++.+.. |+ . ..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.|+++.+.
T Consensus 259 ~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 259 SVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 766543 33 2 224446667777777777777777777642 235667777777777777777777777777754
Q ss_pred CCCCC-HHHHHHHHHHHHh
Q 006624 577 EIKPD-AVSYNTILGCLSR 594 (638)
Q Consensus 577 ~~~p~-~~~~~~l~~~~~~ 594 (638)
.|+ ...+..+..+...
T Consensus 336 --~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 336 --NENDQQIREGLEKAQRL 352 (359)
T ss_dssp --CTTCHHHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHHH
Confidence 333 4455555555443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=9.6e-17 Score=166.36 Aligned_cols=352 Identities=14% Similarity=0.087 Sum_probs=218.2
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCC
Q 006624 159 GPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPD 230 (638)
Q Consensus 159 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 230 (638)
++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 44555555555555 555555555555555442 44555555555555 555555555555555532 3
Q ss_pred HHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHH
Q 006624 231 TVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 231 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444445555544 455555555555555543 44445555555554 455555555555555442 444
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhHH
Q 006624 303 TYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 303 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
.+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|++.
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a------------ 249 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS------------ 249 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------
Confidence 45555555544 455555555555555442 33444444444443 44455555554444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
.+.| +...+..+...|.. .++.++|+.+|++..+.+ ++.++..+..
T Consensus 250 ------------------------~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 250 ------------------------AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp ------------------------HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred ------------------------HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 3332 33344455555555 678888888888877654 4566777777
Q ss_pred HHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 451 GYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522 (638)
Q Consensus 451 ~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 522 (638)
.|... ++.++|...+++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 77766 78888888888888763 4556677777777655 7788888888888764 667777888888
Q ss_pred HH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 006624 523 VR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 523 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 577 (638)
.. .+++++|.+.|++..+.| +...+..+...|.+ .+++++|...|++..+.+
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 87 788899999998888865 56777888888887 788999999999888765
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.9e-16 Score=162.74 Aligned_cols=363 Identities=11% Similarity=-0.002 Sum_probs=286.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 006624 109 IQFFKWAGRRRNFEHNSTTYMALIRCLDE----TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKAL 180 (638)
Q Consensus 109 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 180 (638)
+..+..+.... ++.++..+...|.. .+++++|+..|+...+.+ ++..+..+...|.. .+++++|.
T Consensus 27 ~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45555444333 77888899999988 899999999999998854 67889999999998 89999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAIR 252 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 252 (638)
..|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.+
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998874 78888899999998 889999999999998864 56778888888887 789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006624 253 LFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLF 324 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 324 (638)
.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999875 78899999999998 899999999999998875 66788888888886 88999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 325 MNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
++..+.| +...+..+...|.. .++.++|..+|++..+.+ +.
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~----------------------------- 291 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NS----------------------------- 291 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CH-----------------------------
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CH-----------------------------
Confidence 9998864 56677778888877 788888888888876533 11
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcC
Q 006624 401 NGVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK---RYEAANELFLELKEYC 472 (638)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~ 472 (638)
..+..+...|... +++++|+..+++..+.+ +...+..+...|...| +.++|.+.|++..+.
T Consensus 292 -------~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 292 -------DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp -------HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred -------HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 2222333344443 67777777777777654 4456666666666655 677777777777775
Q ss_pred CCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 006624 473 GCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDG 542 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 542 (638)
.+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 346677777777777 778888888888877754 46667777777777 788888888888888765
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=4.3e-17 Score=170.79 Aligned_cols=431 Identities=10% Similarity=0.080 Sum_probs=294.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006624 148 IQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+++.++.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444432 567888888888 477899999999999998874 3378889999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHH-HccCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 006624 228 FPDTVTYSALISAF-GKLGRDISAIR----LFDEMKEN-GLQP-TAKIYTTLVSIYFK---------LGEVEKALGLVQE 291 (638)
Q Consensus 228 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 291 (638)
|+...|...+... ...|+.++|.+ +|+...+. |..| +...|...+....+ .|++++|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 6777777766533 35677777665 66666543 5443 46677777776654 6788888888888
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH------H
Q 006624 292 MKGKGCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME------A 364 (638)
Q Consensus 292 m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~ 364 (638)
.++. +..+ ...|..........|. .+...++. .+.++++.|..+++.+. +
T Consensus 156 al~~-P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 156 GCVN-PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp HTTS-CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhc-hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 8873 2111 2233322221111110 01111110 12334555555555421 1
Q ss_pred CC---CCCC--------HhHHHHHHHHHHhc----CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------
Q 006624 365 LQ---CKPN--------VVTYNTVIKSLFES----KAP---ASEASAWFEKMKANGVLPSPFTYSILIDGFCK------- 419 (638)
Q Consensus 365 ~~---~~p~--------~~~~~~ll~~~~~~----~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 419 (638)
.. +.|+ ...|...+...... ++. ...+...|++.... .+.+...|..++..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhh
Confidence 11 1232 13444444322221 111 12234566666654 24467788888887775
Q ss_pred cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcC
Q 006624 420 TNRVE-------KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKCG 491 (638)
Q Consensus 420 ~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 491 (638)
.|+++ +|..++++..+.-.|.+...+..++..+.+.|++++|..+|+++.+.. +.+ ..+|...+..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhc
Confidence 68887 899999999873236678899999999999999999999999999852 223 358999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSG-MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIF 570 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 570 (638)
++++|..+|++..+.. +.+...|...... +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|
T Consensus 371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999998753 2222233222222 336899999999999999863 336889999999999999999999999
Q ss_pred HHhhhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 571 TKMQHSE-IKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 571 ~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998753 2332 457888888888999999999999998854
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3e-18 Score=167.98 Aligned_cols=301 Identities=11% Similarity=-0.026 Sum_probs=216.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++..+...+..+...|++++|..+|+++.+..+. +...+..++..+...|++++|...++++.+..+ .+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHH
Confidence 3455667777778888888888888888888766433 556666777778888888888888888887665 5667778
Q ss_pred HHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 236 ALISAFGKLG-RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 236 ~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|.+.++++.+..+. +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 8888888888 8888888888887753 335677888888888888888888888888776544 456666688888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
|++++|...++++.+.... +..++..+...+...|++++|...++++.+.... .++
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~-------- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA---------------IGN-------- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------TSC--------
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------------ccc--------
Confidence 8888888888888876433 6778888888888888888888888877542100 000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
....+.+...+..+..++.+.|++++|...+++..+.. +.+..++..+...+.+.|++++|.+.++++.+. .+
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p 301 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RR 301 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CS
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CC
Confidence 00112334567777888888888888888888877764 556667777777777777777777777777664 23
Q ss_pred CcHHHHHHHHHHH-HhcCC
Q 006624 475 SSARVYAVMIKHF-GKCGR 492 (638)
Q Consensus 475 ~~~~~~~~li~~~-~~~g~ 492 (638)
.+...+..+..++ ...|+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC
T ss_pred CchHHHHHHHHHHHHHhCc
Confidence 4555666666655 33443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.9e-18 Score=167.17 Aligned_cols=295 Identities=12% Similarity=-0.012 Sum_probs=245.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
.+.+...+..++..+...|++++|..+++++++.. +.+...+..++..+.+.|++++|...++++.+..+. +...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 34456678889999999999999999999998864 556677888889999999999999999999887443 7888999
Q ss_pred HHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 201 MILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
+...+...| ++++|.+.|+++....+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 999999999 99999999999998775 567889999999999999999999999999874 33567788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCC
Q 006624 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--------CKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~ 351 (638)
|++++|.+.+++..+..+. +...+..+...+...|++++|...++++.+.. ...+..++..+...|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999988654 78899999999999999999999999998742 13346788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 431 (638)
+++|...++++.+.. +.+...+..+..++.+.|++++|...++
T Consensus 252 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 252 YAEALDYHRQALVLI-------------------------------------PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHHHHS-------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-------------------------------------ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999998876532 1234556677788888888999998888
Q ss_pred HHHhCCCCCCHhhHHHHHHHH-HccCCHH
Q 006624 432 EMEEKGFPPCPAAYCSLINGY-GKAKRYE 459 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 459 (638)
++.+.. +.+..++..+..++ ...|+.+
T Consensus 295 ~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 295 TALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 888765 66777888887777 4555543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2.1e-16 Score=165.57 Aligned_cols=425 Identities=12% Similarity=0.078 Sum_probs=277.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+..+|..++. +.+.|++++|..+|+.++.. .|.+...|...+..+.+.|++++|..+|+++... .|+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 458889999998 47899999999999999985 3667889999999999999999999999999987 4688888877
Q ss_pred HHHH-HhcCCHhHHHH----HHHHHHhC-CCCCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHCCCCCCH
Q 006624 202 ILML-MQEGYYEKIHE----LYNEMCNE-GNCFPDTVTYSALISAFGK---------LGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+... -..|++++|.+ +|+..+.. |...++...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7543 34677776665 77777653 3222456778777776654 68899999999999883111112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC---CCCC--
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM------LKEG---CKPD-- 335 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~p~-- 335 (638)
..|..........|. .+...++. ...+++..|..++.+. .+.. +.|+
T Consensus 166 ~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 333322221100110 00001110 0123344444444431 1111 1222
Q ss_pred ------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-------cCChH------
Q 006624 336 ------IVLINNLINVLGRA----GRL----EDALKLFNKMEALQCKPNVVTYNTVIKSLFE-------SKAPA------ 388 (638)
Q Consensus 336 ------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~------ 388 (638)
...|...+...... ++. ..+..+|+++.... +.+...|..+...+.. .|+..
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 13344433322221 121 35566666665532 1244555555555443 45544
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHH
Q 006624 389 SEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP-AAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
+.+..+++.....-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2336677776652234457778888888888899999999999888863 3343 5788888888888889999999998
Q ss_pred HHHcCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC
Q 006624 468 LKEYCGCSSARVYAVMIKH-FGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC-VP 545 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p 545 (638)
+.+.. +.+...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 88752 2233333332222 346889999999999887753 33577888888888888999999999999888632 22
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006624 546 D--INSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 546 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
+ ...|...+......|+.+.+..+++++.+.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 457777788888889999999999888763
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.8e-18 Score=170.12 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=78.3
Q ss_pred hCCCHHHHHH-HHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 172 KAKMVNKALS-IFYQIKSRKCK---PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
-.|++++|.. .|++....... .+...+..+...+.+.|++++|+..|+++.+..+ .+...+..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCH
Confidence 3467777777 66655443211 1345566777777777777777777777777654 5666777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++....+
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777777653 33666777777777777777777777777776543
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=7.1e-15 Score=159.25 Aligned_cols=385 Identities=14% Similarity=0.129 Sum_probs=297.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..++.--...+++|...|.+.+|+++++++.-.+ +.-+....+.++.+..+. +..+..+..++... .+ .
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-----~d---~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-----YD---A 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----cc---H
Confidence 3456666788899999999999999999998432 123567777788777777 55677776666542 22 3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..+...+...|.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 447788889999999999999853 12222333332 7889999999998652 678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
|++++|+..|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.+..+|.+.++..+ ...+
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee-le~f 1189 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE-LEEF 1189 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH-HHHH
Confidence 9999999999764 378889999999999999999999999887755 333333357778888876553 2332
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
.. .++...|..+.+.|...|++++|..+|... ..|..++.+|++.|++++|.+.+++.
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 22 356677888999999999999999999985 47999999999999999999999987
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+-+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 456899999999999999999998776532 356667789999999999999999998888653 33455676677
Q ss_pred HHHHhc--CCHHHHHHHHHHhhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 006624 555 NGLAKS--GGPKRAMEIFTKMQHSEIKP------DAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 555 ~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
..|++. ++..++.++|..-. ++.| +...|.-++-.|.+.|+++.|..
T Consensus 1322 iLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 776654 45666666666443 3333 56779999999999999999983
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=6.3e-18 Score=168.56 Aligned_cols=305 Identities=10% Similarity=-0.017 Sum_probs=213.6
Q ss_pred ccCChHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 243 KLGRDISAIR-LFDEMKENGL---QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 243 ~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..|++++|.+ .+++..+... ..+...+..+...+.+.|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6665543211 113455777777888888888888888888776544 6777778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006624 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKM 398 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 398 (638)
+|...|+++.+..+. +..++..+...|...|++++|.+.++++.... |+........... .. .
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------h
Confidence 888888888776433 67778888888888888888888888887744 3222111100000 00 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006624 399 KANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+ ...+..+.. +...|++++|...++++.+.. +. +..++..+...+.+.|++++|...++++.+. .+.+
T Consensus 179 ----~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~ 250 (368)
T 1fch_A 179 ----AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPND 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred ----hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCC
Confidence 000 011122233 338889999999999988765 44 6788899999999999999999999998886 4456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------C
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP----------D 546 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~ 546 (638)
..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+..... .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 7889999999999999999999999988753 3457788889999999999999999999988642111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 547 INSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
..+|..+..++...|++++|..++++..
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6889999999999999999998887544
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=2.3e-14 Score=155.36 Aligned_cols=440 Identities=10% Similarity=0.114 Sum_probs=304.9
Q ss_pred CChHHHHHHhccccchHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHH
Q 006624 90 VDHRLVHQVLNIDVEINVKIQFFKWAGR--RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSE 165 (638)
Q Consensus 90 ~~~~~~~~vl~~~~~~~~a~~~f~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 165 (638)
-++.+=..||.-.+ ..-.++.+|... -+. ..++.--...+++|...|++.+|+.+++..+-.+. ..+....+.
T Consensus 951 ~d~~lW~~vl~~~n--~~RR~Lidqv~a~aL~e-~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLESN--PYRRPLIDQVVQTALSE-TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCCc--HHHHHHHHHHHHhhccc-ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 45555555553322 233456667422 111 22444445678889999999999999999984421 134566677
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++....+. +..+..+...++... + ..-+...+...|.+++|.++|++.. ......+.++. ..|
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIG 1090 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHh
Confidence 77777776 556666666665432 2 3347788888999999999999962 12222333333 678
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
++++|.++.++. -+..+|..+..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|.++|.
T Consensus 1091 nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1091 NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999988865 25788889999999999999999999664 277888889999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006624 326 NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (638)
...+.. ++....+.++.+|++.+++++...+. + .++...|..+-..+...|+..+| ..+|...
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA-~~~Y~kA------- 1221 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA-KLLYNNV------- 1221 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH-HHHHHhh-------
Confidence 887764 33333445888999998888644443 1 25667777777777777777766 6776664
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006624 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
..|..+..++++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHH
Confidence 37889999999999999999999876 356888888888888888888888766432 35667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHH
Q 006624 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA--GMIDDAYSLLRRMEEDGCVP------DINSHNIILNGL 557 (638)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~ 557 (638)
.|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.++|..-.. ++| +...|.-+.-.|
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHH
Confidence 9999999999999998877654 33344566666666543 455566666654333 222 466788888888
Q ss_pred HhcCCHHHHHHHH-------------HHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 558 AKSGGPKRAMEIF-------------TKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 558 ~~~g~~~~A~~~~-------------~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
.+.|+++.|.... ...+. -..|+..|...+.-|...+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 8999998887322 22221 1335666666666665555
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.6e-16 Score=160.75 Aligned_cols=151 Identities=9% Similarity=-0.038 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHH-HHHHcCCHHHHHH
Q 006624 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV--YTYNALMS-GMVRAGMIDDAYS 533 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~ 533 (638)
..++|...++.+.+. .+.+...+..+...|...|++++|...|++..+....+.. ..+..+.. .....|++++|+.
T Consensus 315 ~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA-NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHH-CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777765 3345566777888888888888888888888775432221 12222222 2346788889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 006624 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKG- 612 (638)
Q Consensus 534 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 612 (638)
.|++.++. .|+...... ..+.+.+++++....+ +.+..+|..+..+|...|++++|.+.|++.++.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88888874 444332221 2234455555555432 2356788889999999999999999999888643
Q ss_pred CCCCHhhH
Q 006624 613 FEYDQITY 620 (638)
Q Consensus 613 ~~p~~~~~ 620 (638)
..|+..+|
T Consensus 462 ~~p~a~~~ 469 (472)
T 4g1t_A 462 LIPSASSW 469 (472)
T ss_dssp --------
T ss_pred CCCcHhhc
Confidence 34554443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.7e-17 Score=162.75 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006624 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 344 (638)
+...+..+...+.+.|++++|++.|+++.+..+. +..++..+...+...|++++|+..|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 3455777778888888888888888888776544 6778888888888888888888888888876433 6778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 424 (638)
.|...|++++|...++++.+.. |+........ ......+..+...+.+.|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 8888889988888888887632 2211000000 012233455667778888888
Q ss_pred HHHHHHHHHHhCCCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 425 KAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+|...++++.+.. +. +..++..+...+...|++++|.+.++++.+. .+.+..++..+..+|...|++++|...|++
T Consensus 195 ~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 195 GVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887764 33 5667777777777777777777777777665 334455666666666666666666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
+.+.. +.+..++..+...|...|++++|...|+++.+
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65532 22355555555666666666666666665554
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.8e-17 Score=162.68 Aligned_cols=278 Identities=10% Similarity=-0.052 Sum_probs=217.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|...|+.++... +.+..++..+...+.+.|++++|+..|+++.+..+ .+..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44568899999999999999999999998864 66788999999999999999999999999988753 37899999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHH----------HHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVT----------YSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIYTTL 272 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 272 (638)
.|...|++++|++.|+++.+..+ .+... +..+...+...|++++|.+.++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999988653 22222 334578899999999999999999987422 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
...+.+.|++++|++.++++.+..+. +..+|..+...+...|++++|...|+++++..+. +..++..+..+|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887654 7889999999999999999999999999987433 688899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
++|...|+++.+.. |+...- .. ......+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~--~~~~~~-------------~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQ--RKSRNQ-------------QQ----------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHH--HCC-----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--cccCCC-------------cc----------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987632 111000 00 000011345677777778888888877776654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1e-15 Score=158.14 Aligned_cols=151 Identities=15% Similarity=0.024 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHH-HHHhcCCHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIK-HFGKCGRLSDAVD 498 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~ 498 (638)
.+++|...+++..+.. +.+..++..+...+...|++++|.+.|+++.+....+.. ..+..+.. .+...|+.++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3567777777777665 566677788888888888888888888888775433322 12222222 2346788889999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-
Q 006624 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE- 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 577 (638)
.|++..+. .|+...... ....+..++++.++.. +.+..+|..+...|...|++++|++.|++.++.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88888774 355433222 2234455666666543 3467788889999999999999999999988743
Q ss_pred CCCCHHHH
Q 006624 578 IKPDAVSY 585 (638)
Q Consensus 578 ~~p~~~~~ 585 (638)
..|+..+|
T Consensus 462 ~~p~a~~~ 469 (472)
T 4g1t_A 462 LIPSASSW 469 (472)
T ss_dssp --------
T ss_pred CCCcHhhc
Confidence 33444443
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.7e-17 Score=158.25 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=116.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4556677777776662 2346667777777777777777777542 45556777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3445666677777777777777666663 245567777777777777777777777655
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 332 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 411 (638)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+...| ...... +...+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA-~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-QMCGLH-----IVVHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-HHTTTT-----TTTCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH-HHHHHH-----HHhCHhhHH
Confidence 25667777777777777777777766 2566777777777777766655 221111 223344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCC------cHHHHHHH
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK--RYEAANELFLELKEYCGCS------SARVYAVM 483 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~------~~~~~~~l 483 (638)
.++..|.+.|++++|..+++...... +.....|+-+.-+|++-+ ++.+..+.|..-. ++++ +...|..+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHH
Confidence 68888999999999999999998776 667778888888887653 4445555444211 1222 35568889
Q ss_pred HHHHHhcCCHHHHHHHH
Q 006624 484 IKHFGKCGRLSDAVDLF 500 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~ 500 (638)
...|...++++.|....
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 99999999999888744
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.1e-16 Score=155.70 Aligned_cols=289 Identities=13% Similarity=0.145 Sum_probs=126.7
Q ss_pred HHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 006624 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
+..++...++.+.|.+|+... +++.+|..++.++.+.|++++|++.|.. .+|+..|..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCC
Confidence 444555667789999999844 2335999999999999999999999964 367789999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ + |+..+|..++..|...|++++|..+|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~---pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----G---PNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-----C---C----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----C---CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999977776664 4567889999999999999999988874 1 77789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006624 255 DEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h
Confidence 976 47999999999999999999999988 288999999999999999999976655432 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCC------CH
Q 006624 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLP------SP 407 (638)
Q Consensus 335 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~------~~ 407 (638)
.+.-...++..|.+.|.+++|..+++...... +-....|+.+--.+.+ -++... .+.++.... -+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k-y~p~k~-~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK-FKPQKM-REHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT-TCHHHH-HHHHHHHSTTSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh-cCHHHH-HHHHHHHHHHhcCcHHHHHHHHH
Confidence 44445578999999999999999999987654 3344455555333332 233222 222222221 12222 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
..|..+...|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 5677888888888888888663
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=182.20 Aligned_cols=152 Identities=18% Similarity=0.173 Sum_probs=118.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKK---LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHN 551 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 551 (638)
.-..+||++|++||+.|++++|..+|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456889999999999999999999887754 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHH
Q 006624 552 IILNGLAKSGGP-KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD------QITYSSIL 624 (638)
Q Consensus 552 ~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~ 624 (638)
++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ .-++.|+ ..|...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999998874 78889999999989999999999888766554 344444444 3355554 34555555
Q ss_pred HHHhccC
Q 006624 625 EAVGKVD 631 (638)
Q Consensus 625 ~~~~~~g 631 (638)
+.+.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=4.9e-16 Score=151.91 Aligned_cols=274 Identities=10% Similarity=0.007 Sum_probs=134.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+......+...|++++|...|+++.+..+. +..++..+...+...|++++|.+.|+++....+ .+...+..+...+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CCHHHHHHHHHHHH
Confidence 344444455555555555555555443222 444444455555555555555555555544432 33444444444444
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL-IK-GLGRAGRVEDA 320 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A 320 (638)
..|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 4444444444444444431 1111111111000 0000011111 11 25556666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
...++++.+.... +..++..+...+...|++++|.+.++++.+..
T Consensus 158 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------------------------- 202 (327)
T 3cv0_A 158 RTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------------------------------- 202 (327)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------------
Confidence 6666666655332 55566666666666666666666666554311
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----
Q 006624 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS----- 475 (638)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----- 475 (638)
+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.....
T Consensus 203 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 203 ---PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 1233445556666666666666666666666553 4455566666666666666666666666665532211
Q ss_pred ------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 476 ------SARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 476 ------~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+...+..+..++.+.|++++|..+++
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455555555555555555555554
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=5.9e-16 Score=151.29 Aligned_cols=277 Identities=9% Similarity=-0.014 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+..+ .+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 3467788899999999999999999998864 56788999999999999999999999999988743 378899999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH--------------HH-HHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL--------------IS-AFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+...|++++|.+.|+++....+ .+...+..+ .. .+...|++++|.+.++++.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998765 333333333 22 3778889999999999998864 3478889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA 349 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 349 (638)
..+...+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...|+++.+.... +..++..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999999999999887544 6888999999999999999999999999887433 678888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
|++++|.+.++++.+.. |+.. ..... .....+...|..+..++.+.|++++|..+
T Consensus 254 g~~~~A~~~~~~a~~~~--~~~~-------------~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQ--VGGT-------------TPTGE----------ASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp TCHHHHHHHHHHHHHHH--TTSC-------------C---------------CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--Cccc-------------ccccc----------chhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999998876532 1100 00000 00011345666777778888888888877
Q ss_pred HHHH
Q 006624 430 LEEM 433 (638)
Q Consensus 430 ~~~~ 433 (638)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 7643
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.2e-15 Score=145.53 Aligned_cols=150 Identities=10% Similarity=0.066 Sum_probs=78.8
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
....|++..|+..+++.....+.........+.++|...|++++|+..++. .. .|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--ChhHHHHHHHHHHHcCCCcHHH
Confidence 334566666666655554432211123334455666666666666654433 11 1455555555566666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 250 AIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 250 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666655544323 344445555555566666666655554 2344555555555555555555555555555
Q ss_pred Hc
Q 006624 329 KE 330 (638)
Q Consensus 329 ~~ 330 (638)
+.
T Consensus 158 ~~ 159 (291)
T 3mkr_A 158 DQ 159 (291)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=180.19 Aligned_cols=119 Identities=17% Similarity=0.259 Sum_probs=109.6
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006624 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEE---DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 586 (638)
.-..|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 006624 587 TILGCLSRAGM-FEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 587 ~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
++|.++++.|+ .++|.++|++|.+.|+.||..||++++.++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 99999999998 4789999999999999999999995544443
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=7.8e-16 Score=146.90 Aligned_cols=252 Identities=13% Similarity=0.071 Sum_probs=138.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGP--SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
-....|+++.|+..++.... ..|+. .....+.++|...|++++|+..++.. ..|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 34445666666666654432 12221 23344556666666666666544331 234555666666666666666
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.++++...+..+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655431113445555555666666666666666655 24556666666666666666666666666
Q ss_pred HHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 006624 292 MKGKGCALTVYT--YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKP 369 (638)
Q Consensus 292 m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 369 (638)
+.+..+. +... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++..... -
T Consensus 156 ~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 156 MQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 6655322 1111 1112233334466666666666666652 33566666666666666666666666666655331 1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 370 NVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 370 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
+..++..+...+...|+..+++..+++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444555555555555554444455554443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=2.3e-15 Score=137.19 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
+..+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 334444444444444444444444444443222 344444444444444444444444444444433 33444444444
Q ss_pred HHHcc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006624 240 AFGKL-----------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 240 ~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 308 (638)
.+... |++++|++.+++..+.. +-+...+..+...+...|++++|+..|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 55555555555554432 1234444555555555555555555555554444 3444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
..+...|++++|+..|++.++..+. +...+..+...+.+.|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555555544322 4444455555555555555555555443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=5.6e-15 Score=134.61 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+++...|..+...+.+.|++++|...++..++.. +.++..+..+...+.+.|++++|+..|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 5677889999999999999999999999998864 667889999999999999999999999999887544 78899999
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006624 202 ILMLMQE-----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT 270 (638)
Q Consensus 202 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 270 (638)
..++.+. |++++|+..|++..+..+ .+...+..+...+...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 9999999 999999999999999876 578889999999999999999999999999887 6889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.+...|...|++++|+..|++..+..+. +...+..+...+...|++++|...|++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999987655 78889999999999999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.4e-14 Score=136.17 Aligned_cols=226 Identities=10% Similarity=0.010 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--C----HHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--T----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 198 (638)
...|..+...+...|++++|...++.+++.. .++.++..+...+...|++++|...|++..+..... + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678899999999999999999999999876 788999999999999999999999999987753221 2 6889
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...+...|++++|++.|+++.... |+. ..+.+.|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 999999999999999999999999865 443 34666788999999999998863 3356788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006624 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 358 (638)
.|++++|.+.+++..+..+. +...+..+...+...|++++|...|++.++.... +..++..+..++.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999987654 7889999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHHC
Q 006624 359 FNKMEAL 365 (638)
Q Consensus 359 ~~~~~~~ 365 (638)
++...+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998763
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=8e-15 Score=149.46 Aligned_cols=346 Identities=13% Similarity=0.049 Sum_probs=152.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+...+.+.|++++|.+.|++..+.| ++.++..+...|...|+. ++|++.|++..+. +...+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 3444555556666666666555443 333444455555555555 5666666655542 2233444444333
Q ss_pred ccC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 243 KLG-----RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE---KALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 243 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..| +.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 333 45566666666665442 224555555555444322 2333333333333 233444555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 391 (638)
+.++++........+.-...+...+..|...|.+.| +.++|.+.|++..+.|.. +..
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~------------------- 214 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQ------------------- 214 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHH-------------------
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHH-------------------
Confidence 544433333222222111112226666666666677 666777776666654421 111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HccCCHHHHHHH
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKT----NRVEKAHLLLEEMEEKGFPPCPAAYCSLING-Y--GKAKRYEAANEL 464 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~ 464 (638)
.+..+...|... +++++|+.+|++.. . .++..+..+... + ...++.++|.+.
T Consensus 215 -----------------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 215 -----------------RVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp -----------------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred -----------------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 112222222221 34555555555544 2 233444444443 2 334555555555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHH
Q 006624 465 FLELKEYCGCSSARVYAVMIKHFGKCG-----RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLL 535 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~ 535 (638)
|++..+.| +...+..+...|. .| ++++|...|++.. . .+...+..|...|.. ..++++|...|
T Consensus 274 ~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 274 LDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 55555443 3444444444444 33 5566666665554 2 244444445444443 22666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 006624 536 RRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 536 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 577 (638)
++..+.|. ......|...|.. ..++++|...|+...+.|
T Consensus 346 ~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 346 LTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 66666542 2233344444442 235666666666666554
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=3.4e-14 Score=144.80 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=138.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV---NKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+...+.+.|++++|.+.|+.....| ++..+..+...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677888999999999999988765 344556677777778888 8999999998864 6677777887666
Q ss_pred hcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 207 QEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 207 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+ ++++|++.|++....+. ++ .+..|...|...+.. .++.+.+....+.| +...+..|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~--~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE--GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC--SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC--HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 665 78899999999998765 44 666777777766544 34555666665554 46677788888888
Q ss_pred cCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 006624 279 LGEV----EKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA-- 349 (638)
Q Consensus 279 ~g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 349 (638)
.+.+ +++..+++..... +...+..+...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 8854 4444445444433 3337888888888899 999999999999998754 666666777777655
Q ss_pred --CCHHHHHHHHHHHH
Q 006624 350 --GRLEDALKLFNKME 363 (638)
Q Consensus 350 --g~~~~A~~~~~~~~ 363 (638)
+++++|.++|++..
T Consensus 229 ~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA 244 (452)
T ss_dssp SSCCHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHc
Confidence 78889998888875
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.6e-13 Score=125.86 Aligned_cols=200 Identities=10% Similarity=-0.024 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.++..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.|+++....+ .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 3444445555555555555555555544322 2344555555555555555555555555555443 344455555555
Q ss_pred HHcc-CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 241 FGKL-GRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+... |++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555421122 2345555555555666666666666555554332 4555555566666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666655543313455555555555666666666666665544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.4e-13 Score=128.84 Aligned_cols=202 Identities=9% Similarity=0.010 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...+++++... +.+..++..+...+.+.|++++|...|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 5667777777777777777777777776643 445666677777777777777777777776655322 56666667777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.|+++...+..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766611111244556666666666666666666666666543 2345566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|.+.++++.+..+. +...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666554332 4555555666666666666666666666554
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.2e-12 Score=124.21 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
++.++..+...+...|++++|...|+...+ +.++.++..+...|.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 677888999999999999999999999988 4466788889999999 999999999999998875 788999
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006624 200 SMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 99999999 999999999999998863 67788889999998 999999999999999875 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 272 LVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 272 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8999988 999999999999998874 56788888889998 999999999999999874 367788888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 006624 344 NVLGR----AGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 344 ~~~~~----~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+ .+++++|.+.|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99988 899999999999988755
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-13 Score=129.87 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK--PD----IVLINN 341 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 341 (638)
.+..+...+...|++++|++.+++..+.. .+...+..+...+...|++++|...++++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555544444 34444555555555555555555555554442111 11 344455
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 006624 342 LINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+...+...|++++|...++++..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.7e-13 Score=135.06 Aligned_cols=245 Identities=10% Similarity=0.072 Sum_probs=207.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
+..+|+.+..++.+.|++++|+..++.++... +-+..+|+.+..++.+.|+ +++|+..|+++.+..+. +...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45788889999999999999999999999864 5678899999999999997 99999999999988655 889999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK-LGE 281 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~ 281 (638)
.++...|++++|+..|++++...+ .+...|..+..++.+.|++++|++.++++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999886 688999999999999999999999999999875 3478899999999999 666
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----
Q 006624 282 VEKA-----LGLVQEMKGKGCALTVYTYTELIKGLGRAG--RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---- 350 (638)
Q Consensus 282 ~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 350 (638)
.++| ++.+++.+...+. +...|..+...+...| ++++|++.+.++ +. ...+...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5889898887665 7889999999999888 689999999888 43 3346788889999998874
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHh-HHHHHH
Q 006624 351 -----RLEDALKLFNKM-EALQCKPNVV-TYNTVI 378 (638)
Q Consensus 351 -----~~~~A~~~~~~~-~~~~~~p~~~-~~~~ll 378 (638)
..++|.++++++ .+. .|... .|..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~ 360 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIG 360 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 258999999998 653 35443 343333
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1e-13 Score=131.47 Aligned_cols=241 Identities=11% Similarity=0.016 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 202 (638)
...+......+...|++++|...+++.++.. +.+...+..+...+...|++++|+..|+++.+.... ....+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677888999999999999999998854 455668889999999999999999999999884322 2244588999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
..+...|++++|++.|++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776 567889999999999999999999999998763 44677788888344455699
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR---VEDAYGLFMNMLKEG-CKPD------IVLINNLINVLGRAGRL 352 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~ 352 (638)
++|.+.++++.+..+. +...+..+...+...|+ +++|...++++.+.. ..|+ ..++..+...|.+.|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987654 57788888888888888 888999998887642 1122 25778888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHh
Q 006624 353 EDALKLFNKMEALQCKPNVV 372 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~ 372 (638)
++|.+.++++.+.. |+..
T Consensus 238 ~~A~~~~~~al~~~--p~~~ 255 (272)
T 3u4t_A 238 VKADAAWKNILALD--PTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHhcC--ccHH
Confidence 99999999998744 5443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=3.5e-13 Score=126.09 Aligned_cols=211 Identities=10% Similarity=0.021 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
+..+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.|+++.+..+ .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 45677888889999999999999999887643 3788899999999999999999999999988765 57888999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
.+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998733334 5677888999999999999999999999887644 6888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 006624 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
+|...++++.+... .+...+..+...+...|+.++|.+.++.+.+.. |+...+..+
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 248 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 99999999988644 477788888999999999999999999998754 555444433
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=4.9e-14 Score=131.07 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
...+|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45667777777778888888888888777643 44667777777777788888888888877766533 26677777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 77777888888888877777654 466677777777777777777777777777653 335667777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+|.+.++++.+..+. +..++..+...+...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777665433 56667777777777777777777777776653
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=5.7e-13 Score=122.04 Aligned_cols=206 Identities=14% Similarity=-0.013 Sum_probs=179.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+..+|..+...+...|++++|...++.+++.. +.+..++..+...+...|++++|...|+++.+... .+..++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 456789999999999999999999999998854 55688999999999999999999999999987643 3788999999
Q ss_pred HHHHhc-CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 203 LMLMQE-GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 203 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
..+... |++++|.+.|+++...+..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 99999999999999832221346788999999999999999999999998864 3468899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+++|.+.++++.+..+..+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999887652477888888889999999999999999988753
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=7.5e-11 Score=124.12 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=167.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAH-LLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
..+|++.... ++-+...|-..+..+.+.|+.++|. .+|++.... +|.+...+...+...-+.|++++|.++|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555543 3446778888888888889988996 999998875 366777788888888899999999999999876
Q ss_pred cC----------CCC-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHc-CC
Q 006624 471 YC----------GCS-----------SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA-GM 527 (638)
Q Consensus 471 ~~----------~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~ 527 (638)
.. .+. ...+|...+....+.|..+.|..+|.+..+. + ......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 41 111 2346777788888889999999999999875 2 11222332222222233 45
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP--DAVSYNTILGCLSRAGMFEEAARLM 605 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (638)
.+.|..+|+..++. .+-+...|...+......|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999986 44467777788888888999999999999998753222 3457888888888899999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHH
Q 006624 606 KDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 606 ~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+++.+. .|+......+++-|
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHh--CCCCcHHHHHHHHh
Confidence 999865 45544555555544
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=3e-13 Score=133.34 Aligned_cols=248 Identities=11% Similarity=0.091 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..++..+...+.+.|++++|+..|+++.+..+. +..+|+.+..++...|+ +++|++.|++++...+ .+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 456777788888999999999999999887544 78889999999999997 9999999999999876 6788899999
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 317 (638)
..+...|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..++++++.++. +...|+.+...+.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998864 347888999999999999999999999999888765 78888888888888 5665
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 006624 318 EDA-----YGLFMNMLKEGCKPDIVLINNLINVLGRAG--RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 318 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 390 (638)
++| +..|++.++..+. +...|+.+...+.+.| ++++|.+.+..+ + ..
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~---------------------- 305 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PS---------------------- 305 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TT----------------------
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cC----------------------
Confidence 777 4778888776544 6677777777777766 466666655554 2 11
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCHhhHHHHHHHH
Q 006624 391 ASAWFEKMKANGVLPSPFTYSILIDGFCKTN---------RVEKAHLLLEEM-EEKGFPPCPAAYCSLINGY 452 (638)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 452 (638)
+.+...+..++.+|.+.| .+++|+.+++++ .+.+ +.....|..+...+
T Consensus 306 -------------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 306 -------------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 223444555555555542 247788888887 5543 44445555554443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.9e-13 Score=127.00 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=162.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006624 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
..+..+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|++.|+++.+..+ .+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHH
Confidence 45567888888999999999999999999886443 788999999999999999999999999998765 678889999
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..+. +...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 457888999999999999999999999999887554 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
++|...|+++.+... .+..++..+..+|.+.|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999988754 368889999999999999999999999998744
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=6.7e-14 Score=132.88 Aligned_cols=247 Identities=11% Similarity=0.006 Sum_probs=165.8
Q ss_pred ccchHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNF--EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
.++.+.|+..|..+...... +.+..+|..+..++...|++++|...++.++... +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35567788888777654221 1246677888888888888888888888887753 45677888888888888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
...|+++.+..+. +..++..+...|.+.|++++|.+.|+++.+..+ +......++..+...|++++|...+++...
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP---NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888776432 567788888888888888888888888877653 333334444455666888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 336 (638)
.. +++...+ .++..+...++.++|.+.+++........ +...+..+...+...|++++|...|+++.+..+. +
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N- 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T-
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h-
Confidence 53 2333333 36666777777788888887776543211 1456677777777888888888888877765322 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 006624 337 VLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222244555666666666554
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=9.5e-13 Score=124.69 Aligned_cols=257 Identities=12% Similarity=0.075 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSA 236 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ 236 (638)
++..+......+...|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++...... ++ ...|..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHH
Confidence 3445666777788888888888888888776433 5557777888888888888888888888773311 22 234777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
+...+...|++++|++.+++..+.. +.+..++..+...|...|++++|++.+++..+..+. +...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887753 335677778888888888888888888877776433 56666666633344458
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChHHHHH
Q 006624 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR---LEDALKLFNKMEALQC-KPNVVTYNTVIKSLFESKAPASEAS 392 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 392 (638)
+++|...|+++.+..+. +...+..+..++...|+ +++|...++++.+... .|+.. .
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------~--- 217 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY----------------K--- 217 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG----------------H---
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc----------------h---
Confidence 88888888887776433 45666666777766666 6667776666544110 00000 0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 393 AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451 (638)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 451 (638)
..-...|..+...|.+.|++++|...++++.+.. |.+..+...+...
T Consensus 218 -----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 218 -----------DELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred -----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 0012356667778888888888888888888765 5566555554433
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.9e-13 Score=129.68 Aligned_cols=225 Identities=13% Similarity=0.032 Sum_probs=169.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTC---VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+...|++++|+..++++++... +.+..++..+...+...|++++|...|+++.+..+. +..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3446788889999988887532 124567888888888999999999999888876433 688888888899999999
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++....+ .+...+..+...+...|++++|.+.++++.+.. |+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999888765 567788888888889999999999998888753 4544444555566777888999988877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
....... +...+. ++..+...++.++|...+++..+..... +..++..+...|.+.|++++|...|+++....
T Consensus 170 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 170 HFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7765432 333333 6667777888888888888876542211 14677788888888888888888888887643
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.8e-11 Score=115.87 Aligned_cols=224 Identities=15% Similarity=0.008 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006624 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 335 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 414 (638)
+..++..+...|...|++++|...|++..+. .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------------------------~~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------------------------------------KENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------------------------------------TCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------------------------------------CCHHHHHHHH
Confidence 4555666666666677777777666665441 1334455566
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006624 415 DGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK----AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 415 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
..|.. .+++++|...|++..+.+ ++.++..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI 119 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH
Confidence 66666 788888888888877765 66777777778877 888888888888887763 66777778888
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 487 FGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 487 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 887 888888888888888764 55667777777777 888888888888888764 5677777888888
Q ss_pred h----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 006624 559 K----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 559 ~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 612 (638)
. .+++++|...+++..+.+ +...+..+..+|.+ .|++++|.+++++..+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8 888888888888888753 36677778888888 888888888888888664
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=3.9e-10 Score=118.71 Aligned_cols=414 Identities=8% Similarity=0.042 Sum_probs=238.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhCC-CCCCHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRK-CKPTANT 197 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~ 197 (638)
+.|..+|..+++.+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|+ ++.+..+|++..... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468999999999999999999999999999886 57788899999999899998 999999999998873 1378999
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHhC-CC-CCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHH
Q 006624 198 YNSMILMLMQEGYY--------EKIHELYNEMCNE-GN-CFPDTVTYSALISAFGK---------LGRDISAIRLFDEMK 258 (638)
Q Consensus 198 ~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~ 258 (638)
|...+....+.+.. +.+.++|+..+.. |. ...+...|...+..... .++++.+.++|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888766665543 3455788887653 32 22345677777765442 345677889998888
Q ss_pred HCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC--CCC---------------C-----C---
Q 006624 259 ENGLQPTAKIYTTLVSIYFK-------------LGEVEKALGLVQEMKGK--GCA---------------L-----T--- 300 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--~~~---------------~-----~--- 300 (638)
......-..+|......--. ..+++.|...+.++... ++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211112233221111100 11233344444432210 110 0 0
Q ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHh
Q 006624 301 VYTYTELIKGLGRAG-------RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL-KLFNKMEALQCKPNVV 372 (638)
Q Consensus 301 ~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~ 372 (638)
...|...+..--..+ ..+....+|++.+..-+ -+...|...+..+...|+.++|. ++|+..... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 123344443222221 12234455666665522 25666666666666666666665 777666542 222333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 373 TYNTVIKSLFESKAPASEASAWFEKMKANG---------VLPS------------PFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 373 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~ 431 (638)
.|-..+...-..++...+ ..+|+.+.... -.|+ ...|...+....+.|..+.|..+|.
T Consensus 380 Lwl~~a~~ee~~~~~e~a-R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEI-ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444455555555554443 66666555421 0021 2245555555556666677777776
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 432 EMEEK-GFPPCPAAYCSLINGYGKA-KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 432 ~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
.+.+. + ......|...+..-.+. ++.+.|.++|+...+. .+.+...+...+......|+.+.|..+|++.......
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 66654 2 22233333333333333 3466777777666665 4445555566666666666677777777766654321
Q ss_pred C--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 510 P--DVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 510 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
+ ....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 2345566666556667766777776666664
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=2.9e-12 Score=129.10 Aligned_cols=246 Identities=18% Similarity=0.072 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TA 266 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~ 266 (638)
....+......+...|++++|+..|+++....+..+. ...+..+...+...|++++|...+++..+. +..| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4445555556666666666666666666655431111 234555666666666666666666654432 1111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGR--------------------VEDAY 321 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~ 321 (638)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666667777777777777777665543110 11 3466677777777787 77777
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 006624 322 GLFMNMLKE----GCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFE 396 (638)
Q Consensus 322 ~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 396 (638)
..+++..+. +..| ...++..+...|...|++++|...+++..+.. -..++...
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~------- 225 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKAA------- 225 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH---------------HHTTCHHH-------
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---------------HhcCCcHH-------
Confidence 777776542 1111 13467777888888888888888888765410 00111000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 397 KMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
...++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.++++.+
T Consensus 226 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 226 ---------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 123566777888888888888888887764310 011 33455555666666666666666655543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.5e-12 Score=131.29 Aligned_cols=302 Identities=12% Similarity=0.044 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD----IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN 375 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 375 (638)
....+......+...|++++|...|+++.+.... + ..++..+...|...|++++|...++++....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 4444555556666666666666666666665322 2 2355666666667777777777666654310
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHH
Q 006624 376 TVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLIN 450 (638)
Q Consensus 376 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~ 450 (638)
-..++.. .....+..+...+...|++++|...+++..+... ..+ ..++..+..
T Consensus 78 ------~~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ------RTIGDQL----------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ------HHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HhccccH----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 0000000 0122344455556666666666666655543210 011 235555566
Q ss_pred HHHccCC--------------------HHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 451 GYGKAKR--------------------YEAANELFLELKEY----CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 451 ~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
.+...|+ +++|.+.+.+..+. +. +....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66666666655432 10 11133566666667777777777777766543
Q ss_pred CCC-CCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 506 LRC-KPD----VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV-PD----INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 506 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
... .++ ..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011 235666667777777777777777766642100 11 44566677777777777777777777654
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCc
Q 006624 576 S----EIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAK----GFEY-DQITYSSILEAVGKVDED 633 (638)
Q Consensus 576 ~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~ 633 (638)
. +..+ ...++..+..+|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1 1111 1445666777777777777777777765532 1111 123455555555555554
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.9e-11 Score=117.87 Aligned_cols=219 Identities=15% Similarity=0.121 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hCCCH-------HHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILG-------KAKMV-------NKALSIFYQIKS-RKCKPTANTYNSMILMLM 206 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 206 (638)
++|...|++++... +.++..|..++..+. +.|++ ++|..+|++..+ ..+ .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 57777888877753 667778888777765 35775 889999998887 333 36778888888888
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF-KLGEVEK 284 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~ 284 (638)
+.|++++|.++|+++++..+ .+.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999888654 2333 78888888888899999999999888764 234555554444322 3688999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG-CKP--DIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
|.++|+...+..+. +...|..++..+.+.|++++|..+|++.++.. ..| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888876544 77888888888888899999999999888863 343 466788888888888999999888888
Q ss_pred HHHCC
Q 006624 362 MEALQ 366 (638)
Q Consensus 362 ~~~~~ 366 (638)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87643
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.4e-12 Score=111.53 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
+|..+...|.+.|++++|+..|++..+..+. +..++..+..+|.+.|++++|++.++....
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3333333333333333333333333333221 333333333333333444444333333333
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=1.2e-12 Score=132.27 Aligned_cols=237 Identities=17% Similarity=0.043 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKEN----GL-QPTAKIYTT 271 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~ 271 (638)
+...+...|++++|++.|+++.+..+ .+. ..+..+...+...|++++|.+.+++..+. +. +....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34444445555555555555444432 121 23444444445555555555555444321 10 112334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGK----G-CALTVYTYTELIKGLGRAGR-----------------VEDAYGLFMNMLK 329 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~ 329 (638)
+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|...+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 555555555655555555554432 0 01123355556666666666 6666666655543
Q ss_pred c----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 006624 330 E----GC-KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404 (638)
Q Consensus 330 ~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (638)
. +. .....++..+...|...|++++|...+++..+.. -..++...
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~--------------- 261 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA---------------REFGDRAA--------------- 261 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHHH---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---------------HhcCCcHH---------------
Confidence 1 11 1123366677777888888888888877765411 00011000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF--P---PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 405 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
....+..+..+|...|++++|...+++..+... . ....++..+...+...|++++|...+++..+
T Consensus 262 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 262 -ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp -HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123556677777788888888888877654310 0 0123444555555555555555555555443
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=1.8e-12 Score=131.09 Aligned_cols=280 Identities=14% Similarity=0.029 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHhhC----C-CCCCH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR----K-CKPTA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 195 (638)
...+..+...+...|++++|...++++++.. +.++ .++..+...+...|++++|...|++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455677788999999999999999998863 3333 47888899999999999999999887653 1 12245
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHccCC-----------------hHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN----CFPDTVTYSALISAFGKLGR-----------------DISAIRLF 254 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 254 (638)
.++..+...|...|++++|.+.|+++..... ......++..+...+...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788899999999999999999998876421 11234578888899999999 99999988
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 255 DEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 255 ~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
++..+. +..+ ...++..+...|...|++++|++.+++..+.... .+ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 877542 1111 2457888889999999999999999887754211 12 236778888999999999999999
Q ss_pred HHHHHcCCC-C----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006624 325 MNMLKEGCK-P----DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 325 ~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 399 (638)
++..+.... . ...++..+...|...|++++|...+++..... -..++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~----------- 340 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA---------------QELGDRI----------- 340 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHCCChH-----------
Confidence 888764211 1 14577788888999999999999988875411 0001100
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 436 (638)
....++..+..+|.+.|++++|...+++..+.
T Consensus 341 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 -----GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01335667788888999999999999887764
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=6.3e-12 Score=111.09 Aligned_cols=168 Identities=16% Similarity=0.135 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
++..|..+...|.+.|++++|++.|++.++..+ .+...+..+...+.+.|++++|...++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 678899999999999999999999999999876 688899999999999999999999999998864 34678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 353 (638)
..+...++++.|.+.+.+.....+. +...+..+...+.+.|++++|+..|++.++..+. +..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 9999999999999999999887655 7889999999999999999999999999997554 7889999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 006624 354 DALKLFNKMEALQ 366 (638)
Q Consensus 354 ~A~~~~~~~~~~~ 366 (638)
+|.+.|++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998743
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=2e-12 Score=126.44 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CC-CCCHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSR----KC-KPTAN 196 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 196 (638)
..+......+...|++++|...++++++.. +.+ ..++..+...+...|++++|...+++..+. +. .....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 445566778888888888888888887753 223 356777888888888888888888776432 11 11355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCC--------------------hHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGR--------------------DISAIR 252 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 252 (638)
++..+...+...|++++|.+.+++.....+..++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888888888888888888887653221122 3366777777777787 777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 253 LFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-----ALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 253 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
.+++..+. +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77765432 1111 134566667777777777777777766654210 0012255566666666777777777
Q ss_pred HHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 323 LFMNMLKEGCK-PD----IVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 323 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666542110 11 3355556666666666666666666554
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2.5e-12 Score=125.78 Aligned_cols=238 Identities=19% Similarity=0.096 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIY 269 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~ 269 (638)
......+...|++++|+..|+++.+..+ .+ ...+..+...+...|++++|.+.+++..+. +..+ ...++
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344445555555555555555555432 12 234445555555555555555555544321 1111 13445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGR--------------------VEDAYGLF 324 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 324 (638)
..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 55666666666666666666555432100 11 2355556666666666 66666666
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006624 325 MNMLKE----GCK-PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 325 ~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 399 (638)
++.... +.. ....++..+...+...|++++|...+++..+.. -..++..
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~----------- 220 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKA----------- 220 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---------------HhcCChH-----------
Confidence 555431 111 113356667777777788888877777664310 0000000
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELK 469 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 469 (638)
....++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...++++.
T Consensus 221 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 221 -----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0123456667777777888888877777654210 011 2344445555555555555555555443
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=2.9e-12 Score=131.38 Aligned_cols=215 Identities=11% Similarity=0.023 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006624 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV-NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN 219 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 219 (638)
++++...+++.... .+.+...+..+...+...|++ ++|+..|++..+..+. +..+|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555566655443 244667777777777777777 7777777777766432 57777777777777788888888887
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHcc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 006624 220 EMCNEGNCFPDTVTYSALISAFGKL---------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL--------GEV 282 (638)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 282 (638)
+..+.. |+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|... |++
T Consensus 162 ~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765 5567777777777777 77788888887777653 33567777777777777 778
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++|++.|++..+..+. -+...|..+...|...|++++|...|++..+..+. +...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887776431 26777778888888888888888888888776443 56677777777777777777776554
Q ss_pred HH
Q 006624 361 KM 362 (638)
Q Consensus 361 ~~ 362 (638)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=3e-11 Score=116.53 Aligned_cols=221 Identities=6% Similarity=-0.010 Sum_probs=180.6
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDE-------TRMI-------GVMWKSIQDMVRSTCVMGPSVLSEIVNILG 171 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (638)
+.|+..|+.+.... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46677777776543 5688899988888763 5886 899999999998423557779999999999
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-ccCChHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-KLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 249 (638)
+.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++.++..+ ++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986432 344 899999999999999999999999999765 44445544433322 3699999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-CAL--TVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 3478899999999999999999999999999863 343 577899999999999999999999999
Q ss_pred HHHcCC
Q 006624 327 MLKEGC 332 (638)
Q Consensus 327 ~~~~~~ 332 (638)
+.+..+
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 988643
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.3e-12 Score=130.97 Aligned_cols=215 Identities=10% Similarity=-0.042 Sum_probs=188.0
Q ss_pred chHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMI-GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
..+.+++.+....... +.+...|..+..++...|++ ++|...|++.++.. +.+..++..+...|.+.|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3556677776554433 46889999999999999999 99999999998864 55688999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc--------C
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQE---------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL--------G 245 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 245 (638)
|++..+. .|+...+..+...|... |++++|++.|++..+..+ .+...|..+...+... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999988 46679999999999999 999999999999999876 6788999999999998 9
Q ss_pred ChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 246 RDISAIRLFDEMKENGLQ---PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
++++|++.|++..+.. + .+...|..+...|...|++++|++.|++..+..+. +...+..+...+...|++++|+.
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999863 2 37889999999999999999999999999988655 77888999999999999999987
Q ss_pred HHHHH
Q 006624 323 LFMNM 327 (638)
Q Consensus 323 ~~~~~ 327 (638)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=2.4e-11 Score=121.35 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=152.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGK----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-----DIVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-----~~~~~~ 340 (638)
....+...|++++|.+.+++..+. +-.+ ...++..+...+...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888888888888887754 1111 2456777888888888888888888887763111 1 235778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (638)
.+...|...|++++|...+++..+.. -..++... ...++..+..+|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~----------------~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA---------------EAEKQPQL----------------MGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHH----------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH---------------HHcCChHH----------------HHHHHHHHHHHHHHC
Confidence 88899999999999999998876411 01111110 123567788899999
Q ss_pred CCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhcC
Q 006624 421 NRVEKAHLLLEEMEEK----GF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEYC----GCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g 491 (638)
|++++|...+++..+. +. +....++..+...+.+.|++++|...+++..+.. .+.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999988762 22 3445678888888888888888888888876531 1111222455556666666
Q ss_pred C---HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 492 R---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 492 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
+ +++|+.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 55555555443 11122 23444555566666666666666665553
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=8.9e-13 Score=127.52 Aligned_cols=242 Identities=14% Similarity=0.098 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-----
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR----- 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 189 (638)
+.+..+|..+...+...|++++|...++++++. ..+....++..+...+...|++++|...|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999998773 23445677888999999999999999999988754
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-
Q 006624 190 -K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN- 260 (638)
Q Consensus 190 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 260 (638)
+ ......++..+...+...|++++|.+.|+++.+. +........+..+...+...|++++|++.++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 2234677889999999999999999999998865 211134567888899999999999999999998764
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC-------HHHHHHHHHHHHhcCCHHHH
Q 006624 261 -----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-------CALT-------VYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 261 -----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~-------~~~~~~li~~~~~~g~~~~A 320 (638)
+..| ...++..+...|...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 35578889999999999999999999987531 1111 11222233344455566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
...++...... +.+..++..+..+|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66676666542 22556788899999999999999999998765
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=3.5e-11 Score=120.20 Aligned_cols=299 Identities=9% Similarity=0.024 Sum_probs=191.2
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCCCH--HHHHHHHHHH--HhCCCHHHHH-----------HHHHHHhhCCCCCCHHH-
Q 006624 136 DETRMIGVMWKSIQDMVRS--TCVMGP--SVLSEIVNIL--GKAKMVNKAL-----------SIFYQIKSRKCKPTANT- 197 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~- 197 (638)
.+.+++++|..+++++.+. ....+. ..|..++..- .-.+.++.+. ..++.+... ..+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchhH
Confidence 4578888888888887554 222333 3334433321 1223344444 666665442 111122
Q ss_pred -----HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--C----
Q 006624 198 -----YNSMILMLMQEGYYEKIHELYNEMCNEGNCFP----DTVTYSALISAFGKLGRDISAIRLFDEMKENG--L---- 262 (638)
Q Consensus 198 -----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~---- 262 (638)
+......+...|++++|++.|++........+ ...++..+...+...|++++|.+.+++..+.- .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 22366777889999999999999877522112 24678888999999999999999999887531 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 006624 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GC- 332 (638)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~- 332 (638)
.....+++.+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 112457888999999999999999999887753111 11 247788889999999999999999998872 22
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
+....++..+...|.+.|++++|...+++..+.. -..++.. ....+..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~-----------------~~~~~~~ 308 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS---------------QKAGDVI-----------------YLSEFEF 308 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------------HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHH-----------------HHHHHHH
Confidence 3346678889999999999999999998875411 0001100 1112344
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 413 LIDGFCKTNR---VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 413 l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+...+...|+ +++|+.++++.. ..+.....+..+...|...|++++|.+.+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666666776 566666665541 1112233555566666666777776666666554
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.5e-11 Score=118.80 Aligned_cols=238 Identities=14% Similarity=0.118 Sum_probs=135.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 006624 371 VVTYNTVIKSLFESKAPASEASAWFEKMKAN-------GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK------G 437 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 437 (638)
...+..+...+...|+..++ ..+++++... ..+.....+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVA-VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34555666666666666666 5555555542 12223455666667777777777777777776543 1
Q ss_pred -CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 006624 438 -FPPCPAAYCSLINGYGKAKRYEAANELFLELKEY------CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--- 506 (638)
Q Consensus 438 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 506 (638)
.+....++..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223446666777777777777777777776653 11 223455666677777777777777777766543
Q ss_pred ---CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 006624 507 ---RCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED-------GCVPD-------INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 507 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
+..|+ ..++..+...+...|++++|.+.++++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 11222 345666667777777777777777776642 01111 1111222222334444555555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.++...... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554321 22456788999999999999999999998874
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.1e-10 Score=102.93 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+..+ .+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 3344444444444444444444443321 1344444444444444444444444444444332 233444444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGL 323 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (638)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444331 223344444444444444444444444444433221 334444444444444444444444
Q ss_pred HHHHH
Q 006624 324 FMNML 328 (638)
Q Consensus 324 ~~~~~ 328 (638)
++++.
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=3.4e-11 Score=128.40 Aligned_cols=164 Identities=14% Similarity=0.113 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
..+++.+...|.+.|++++|+..|++..+..+. +..+|+.+..+|.+.|++++|++.|++.++..+ .+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 344444555555555555555555554444222 344555555555555555555555555554443 34445555555
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
.+...|++++|++.|++..+.. +-+..+|+.+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 5555555555555555554432 123445555555555555555555555555554333 44555555555555555555
Q ss_pred HHHHHHHHH
Q 006624 320 AYGLFMNML 328 (638)
Q Consensus 320 A~~~~~~~~ 328 (638)
|.+.+++++
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.4e-10 Score=102.17 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...++++.+..+ .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4577888899999999999999999887753 55788899999999999999999999999987643 378889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.++++....+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998765 678889999999999999999999999998874 4568899999999999999999
Q ss_pred HHHHHHHHHhCC
Q 006624 285 ALGLVQEMKGKG 296 (638)
Q Consensus 285 A~~~~~~m~~~~ 296 (638)
|.+.+++..+..
T Consensus 163 A~~~~~~~~~~~ 174 (186)
T 3as5_A 163 ALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999987653
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=2e-09 Score=106.94 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HHHHH-
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFP----PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS--ARVYA- 481 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~- 481 (638)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.......++ .....
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3444555555556666666655555432111 0122344455555555555555555555543211111 11111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHH
Q 006624 482 ---VMIKHFGKCGRLSDAVDLFNEMKKLRCKPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPDI-NSH 550 (638)
Q Consensus 482 ---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~ 550 (638)
..+..+...|++++|...+++.......+. ...+..+...+...|++++|...+++.... |..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 122234455555555555555443221110 112344445555555555555555554431 111111 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 551 NIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 551 ~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..+...+...|+.++|...+++...
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444455555555555555555543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=7.2e-10 Score=110.35 Aligned_cols=236 Identities=9% Similarity=0.001 Sum_probs=158.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGC-AL----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--C---KP-DIVL 338 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~p-~~~~ 338 (638)
......+...|++++|+..+++..+... .+ ...++..+...|...|++++|...+++..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566788889999988888875411 11 24567778888889999999999888877631 1 11 2456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (638)
++.+...|...|++++|.+.+++..+. .-..++.. ....++..+..+|.
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~---------------~~~~~~~~----------------~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALEL---------------AMDIQNDR----------------FIAISLLNIANSYD 233 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHH----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---------------HHHcCCHH----------------HHHHHHHHHHHHHH
Confidence 788889999999999999999887541 01111111 01245677888899
Q ss_pred hcCCHHHHHHHHHHHHh-----CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHh
Q 006624 419 KTNRVEKAHLLLEEMEE-----KGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG----CSSARVYAVMIKHFGK 489 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~ 489 (638)
..|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+... +.....+..+...|..
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 99999999999998876 33 33466778888888888888888888888876422 2223445556666666
Q ss_pred cCC---HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 490 CGR---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 490 ~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
.++ +.+|+..+++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 313 ~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666 56666666552 11222 23445566666777777777777766654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=7.9e-11 Score=125.56 Aligned_cols=166 Identities=17% Similarity=0.109 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+..+|+.+..+|.+.|++++|++.|++.++..+ .+...|..+...+.+.|++++|++.|++.++.. +-+..+|+.+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 578899999999999999999999999999876 678899999999999999999999999999864 33688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 353 (638)
.+|.+.|++++|++.|++..+.++. +...|..+...|.+.|++++|+..|++.++.... +...+..+..+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999988765 7899999999999999999999999999997554 7889999999999999999
Q ss_pred HHHHHHHHHHH
Q 006624 354 DALKLFNKMEA 364 (638)
Q Consensus 354 ~A~~~~~~~~~ 364 (638)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.9e-10 Score=104.21 Aligned_cols=208 Identities=8% Similarity=0.009 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.++..|......+...|++++|...|+..+....+++...+..+..++.+.|++++|+..|++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678899999999999999999999999988764478888888999999999999999999999987544 678899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDT-------VTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTL 272 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l 272 (638)
..|...|++++|++.|++..+..+ .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998775 444 56888888999999999999999999886 344 5677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 344 (638)
..+|...| ...++++...+.. +...|.... ....+.+++|+..|++..+..+. +..+...+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 88876544 3445555555432 445554443 33456789999999999987543 4555544433
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=2.3e-09 Score=106.54 Aligned_cols=195 Identities=8% Similarity=-0.072 Sum_probs=87.4
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHH
Q 006624 169 ILGKAKMVNKALSIFYQIKSRKCKPTA----NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISA 240 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~ 240 (638)
.+...|++++|...+++........+. .+++.+...+...|++++|.+.+++.....+...+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334445555555555554433221121 133444445555555555555555544321110111 123444455
Q ss_pred HHccCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKEN----GLQ--P-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA----LTVYTYTELIK 309 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~ 309 (638)
+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 55555555555555554432 111 1 1233444555555566666666665555432211 11234555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHccCCHHHHHHHHHHHH
Q 006624 310 GLGRAGRVEDAYGLFMNMLKEGCKPD--IVLIN----NLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...++...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 55666666666666665544211111 11111 12233455566666666665543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=6e-10 Score=102.11 Aligned_cols=209 Identities=11% Similarity=0.030 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.++..+......+.+.|++++|+..|++..+....++...+..+..++...|++++|++.|++..+..+ .+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHH
Confidence 4567889999999999999999999999999876546888888899999999999999999999999775 57788999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTA-------KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTE 306 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 306 (638)
+...+...|++++|++.+++..+.. +.+. ..|..+...+...|++++|++.|++..+.+ |+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHH
Confidence 9999999999999999999999863 2344 568888899999999999999999998863 33 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
+...+...| ..+++++...+.. +...+.... ....+.+++|...+++..+.. |+......++..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~ 222 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHH
Confidence 777775544 4445666555332 444444433 334567899999999998854 665555444433
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=3.8e-09 Score=105.10 Aligned_cols=166 Identities=13% Similarity=0.034 Sum_probs=119.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCC--C---CC-CHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKENG--L---QP-TAKI 268 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~~~ 268 (638)
......+...|++++|++.|+++.......++ ..++..+...+...|+++.|...+++..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34455667888999999998888764322133 3567778888888899988888888876531 0 11 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGK----GCA-LTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-----EGCKPDIVL 338 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 338 (638)
++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...|++..+ .... ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 778888888899999888888877653 111 1234677788888888999998888888877 3332 3667
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
+..+...|.+.|++++|...+++..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788888888888888888888887653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.2e-10 Score=110.65 Aligned_cols=227 Identities=14% Similarity=0.091 Sum_probs=147.1
Q ss_pred hcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHH
Q 006624 137 ETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMI 202 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~ 202 (638)
..|++++|...+++.++. ..+....++..+...+...|++++|+..|+++.+. + ......++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 22334567888888889999999999999888654 1 122456788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC-----C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEG-----N-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN------GLQP-TAKIY 269 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 269 (638)
..|...|++++|.+.|+++.... + .+.....+..+...+...|++++|.+.++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88889999999999998887651 1 1134567788888888889999999988888764 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCC
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGK-------GCAL-TVYTYTELIKGLGRAGRVE------DAYGLFMNMLKEGCKPD 335 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~p~ 335 (638)
..+...+...|++++|.+.+++..+. ...+ ....+..+...+...+... ++...++..... ....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88888888889999999888887753 1111 2223333333333322222 222222211111 1113
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 336 IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..++..+...|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888999998888887754
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.8e-10 Score=109.43 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=158.0
Q ss_pred cchHHHHHHHHHhhc------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHH
Q 006624 103 VEINVKIQFFKWAGR------RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS------T-CVMGPSVLSEIVNI 169 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~ 169 (638)
++++.|+..|+.+.. ....+....+|..+..++...|++++|...+++++.. + .+....++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 444555555554432 1222345778999999999999999999999998764 1 12345688999999
Q ss_pred HHhCCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHH
Q 006624 170 LGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~ 236 (638)
+...|++++|...|++..+. . .+....++..+...+...|++++|.+.|+++... ........++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999998764 1 1234678889999999999999999999999875 111124567889
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKEN-------GLQP-TAKIYTTLVSIYFKLGE------VEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+...+...|++++|.+.++++.+. ...+ ....+..+...+...+. +..+...++..... .+....
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNT 253 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 999999999999999999998863 1122 23334444444433332 23333333222211 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 303 TYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
++..+...|...|++++|..+|++.++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999988753
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=6e-10 Score=106.35 Aligned_cols=169 Identities=12% Similarity=0.010 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHcc-CChHHHHHHHHHHHHCCCCC-C----
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKL-GRDISAIRLFDEMKENGLQP-T---- 265 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~-~---- 265 (638)
.+|+.+..+|.+.|++++|+..|++.+...+...+ ..+++.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34444445555555555555554444332110011 23445555555553 55555555555554321000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---
Q 006624 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV------YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD--- 335 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~--- 335 (638)
..+++.+...+.+.|++++|+..|++..+..+.... ..|..+..++...|++++|...|++.++..+. ++
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 234555555566666666666666655554322111 13445555555666666666666655542111 00
Q ss_pred HHHHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 006624 336 IVLINNLINVLG--RAGRLEDALKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 364 (638)
...+..++..+. ..+++++|+..|+.+..
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 112333444443 34556666666655543
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=2.8e-09 Score=99.92 Aligned_cols=187 Identities=8% Similarity=-0.060 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANT 197 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 197 (638)
.+...+......+.+.|++++|...|+.++... +.+ ..++..+..++.+.|++++|+..|+++.+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666666666666666666666666542 222 455666666666666666666666666654221 12345
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006624 198 YNSMILMLMQ--------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 198 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+..+..++.. .|++++|+..|++++...+. +......+. .+...... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 5556666666 66666666666666665432 111111110 00000000 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCAL--TVYTYTELIKGLGRA----------GRVEDAYGLFMNMLKE 330 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 330 (638)
..+...|.+.|++++|+..|+++.+..+.. ....+..+..+|... |++++|...|+++++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 456666777777777777777776653321 234555566666544 6667777777777665
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=6e-08 Score=99.16 Aligned_cols=215 Identities=11% Similarity=-0.008 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHhhC-CCC-CCHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSR-KCK-PTANTYN 199 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~ 199 (638)
+-..+|...+..+-. |+++.+..+|+..+. ..|+...|...+....+.+. .+....+|+..... |.. .+...|.
T Consensus 13 ~aR~vyer~l~~~P~-~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 334555555555554 777888888887777 34577777777776666552 34566677766543 422 3566666
Q ss_pred HHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 200 SMILMLM----QEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 200 ~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
..+..+. .+|+.+.+..+|++++.... .+.. .|..... +.+..+...+..++.+.
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~--~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~----------------- 149 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPM--GSLSELWKDFEN-FELELNKITGKKIVGDT----------------- 149 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC--TTHHHHHHHHHH-HHHHHCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChh--hhHHHHHHHHHH-HHHHhccccHHHHHHHH-----------------
Confidence 6666543 24567777777777776321 2221 1111111 11111111222222111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG--R-----VEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
.+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++...+ .+...|...+..+.
T Consensus 150 ----~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 150 ----LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLI 224 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 1123334444443332100013345555554432211 1 2346678888887643 35777887888888
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 006624 348 RAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~ 365 (638)
+.|+.+.|..++++....
T Consensus 225 ~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC
Confidence 888999999999988875
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=3.4e-09 Score=101.12 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-CC----
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS----TCVM-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-PT---- 194 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---- 194 (638)
...|+....+|...|++++|...|++.+.. +-++ ...+++.+..+|.+.|++++|+..|++..+.... .+
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 346666666777777777777777666543 1111 1346667777777777777777777766543111 01
Q ss_pred HHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH---
Q 006624 195 ANTYNSMILMLMQE-GYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA--- 266 (638)
Q Consensus 195 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--- 266 (638)
..+++.+..+|... |++++|++.|++.+...+...+ ..++..+...+.+.|++++|+..|++..+.......
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 34566677777775 7777777777776654321011 245666677777777777777777777664322111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006624 267 ---KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-T---VYTYTELIKGLG--RAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 267 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 329 (638)
..|..+..++...|++++|...+++..+..+.. + ...+..++..+. ..+++++|+..|+.+..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 145566666777777777777777766543211 1 112333444443 34556666666655443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=6.3e-09 Score=85.89 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..++..+...|++++|..+|+++.+..+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444444444444444444443332 233334444444444444444444444444332 1233334444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444433221 33334444444444444444444444443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=4.1e-09 Score=98.80 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=74.0
Q ss_pred cccchHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh-----
Q 006624 101 IDVEINVKIQFFKWAGRRR-NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGK----- 172 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----- 172 (638)
..++++.|+..|..+.... ..+....++..+..++.+.|++++|...|+..++... +..+.++..+..++.+
T Consensus 27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 4678999999999887654 2122278899999999999999999999999988532 1235678888899998
Q ss_pred ---CCCHHHHHHHHHHHhhCCC
Q 006624 173 ---AKMVNKALSIFYQIKSRKC 191 (638)
Q Consensus 173 ---~g~~~~A~~~~~~~~~~~~ 191 (638)
.|++++|+..|+++.+..+
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHCT
T ss_pred cccchhHHHHHHHHHHHHHHCc
Confidence 9999999999999988743
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=6.5e-09 Score=85.81 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|...|+++....+ .+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHH
Confidence 34444555555555555555555544322 2445555555555556666666666666555443 34455555556666
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..|++++|.+.++++.+.. +.+..++..++..+.+.|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666655542 224555556666666666666666666665543
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=5.1e-09 Score=94.19 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+..+|.+.|++++|+..|++.++..+ .+...+..+...+...|++++|++.|++..+.. +.+..++..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 66666666666666666666666554 455666666666666666666666666666643 234556666666655443
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 281 E--VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 281 ~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+ .+.+...++.... +.|....+.....++...|++++|...|++.++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 2333444443321 1222222333344445566666666666666653
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=1.7e-09 Score=116.09 Aligned_cols=171 Identities=11% Similarity=-0.046 Sum_probs=91.6
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 136 DETRMIGVMWKSIQDMV--------RSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
...|++++|++.+++.+ .. .+.+...+..+...+.+.|++++|+..|+++.+..+. +...|..+..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666655 21 1334455555555666666666666666665554322 45555556666666
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|++++|++.|+++.+..+ .+...+..+...+.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655543 344555555555555666655 55555555542 2244555555555555566666655
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
.|++..+.++. +...+..+..++..
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHc
Confidence 55555544322 23444444444443
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=4.8e-07 Score=92.48 Aligned_cols=201 Identities=11% Similarity=-0.015 Sum_probs=132.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..++++.... ++.+...|...+..+.+.|+.++|..++++.... |.+...+...... .+.+ +. ++.+.+.
T Consensus 199 ~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~---~~---~~~l~~~ 268 (493)
T 2uy1_A 199 HFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEE---AV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCT---HH---HHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchh---HH---HHHHHHH
Confidence 4556666553 2445777888888888889999999999998877 4443333322111 1111 11 2222221
Q ss_pred C------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHH
Q 006624 472 C------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR-AGMIDDAYSLLRRM 538 (638)
Q Consensus 472 ~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 538 (638)
- ......+|...+....+.++.+.|..+|++. +.. ..+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 0112345667777777788899999999999 321 1233334322222122 34799999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+.. +-+...+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++..
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9853 2245566677887889999999999999983 2577888888877888999999999888874
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=8.3e-09 Score=92.79 Aligned_cols=172 Identities=10% Similarity=-0.025 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHHHC
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA----------------LISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+......+.+.|++++|+..|++.....+ .+...|.. +...+.+.|++++|+..|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNI--DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 333444455556666666666666655442 23334444 888888999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHH
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR--VEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
. +-+...+..+...+...|++++|+..|++..+.++. +..++..+...|...|+ .+.+...++.... ..|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 4 346888899999999999999999999999887665 77888888888766554 3445555555432 2222334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT 376 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 376 (638)
+.....++...|++++|...|++..+. .|+......
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 444566667788999999999998774 466554443
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=4.7e-08 Score=91.20 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
|+..+++..+.+ +++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443333 23333333444444444555555555544433322 1234444445555555555555555555554
Q ss_pred hCCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 505 KLRCKP-----DVYTYNALMSG--MVRAG--MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 505 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 23 13333333333 12222 455555555555443 2332222223334555555555555555443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.3e-09 Score=114.94 Aligned_cols=174 Identities=10% Similarity=-0.081 Sum_probs=132.9
Q ss_pred HhCCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 171 GKAKMVNKALSIFYQIK--------SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|++.|+++.+..+ .+...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHHH
Confidence 67788888888888887 432 23667788888888888888888888888888765 57778888888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..|++++|++.|++..+.. +.+...+..+..++.+.|++++ ++.|++..+.++. +...|..+..++.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888763 3356778888888888888888 8888888877655 67788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
.|++..+.... +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 88888765332 35566667777655444
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=8.3e-09 Score=98.00 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH-HHH
Q 006624 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT-YSA 236 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~ 236 (638)
.+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|.+.++++.... |+... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHH
Confidence 33445555556666666666666666666555332 55566666666666666666666666665543 33222 222
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAG 315 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g 315 (638)
....+...++.++|.+.+++..+.. +.+...+..+...+...|++++|++.|+++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223445555666666666665543 2345666666666666666666666666666654331 2455666666666666
Q ss_pred CHHHHHHHHHHHH
Q 006624 316 RVEDAYGLFMNML 328 (638)
Q Consensus 316 ~~~~A~~~~~~~~ 328 (638)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666665543
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=3.1e-07 Score=86.67 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=153.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 006624 140 MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK--MVNKALSIFYQIKSRKCKPTANTYNSMILML----MQE---GY 210 (638)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 210 (638)
..++|++++..++... +-+..+++.-...+...| ++++++.+++.+....++ +..+|+.....+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3357777777777643 445556676666777777 788888888888776544 666676666555 444 67
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------H
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE------V 282 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~ 282 (638)
++++++.++++.+..+ .+-.+|+.-.-.+.+.|+++ ++++.++++.+.. +-|..+|+.-...+.+.+. +
T Consensus 126 ~~~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 7888888888887765 56677776666667777777 8888888888764 3467777777766666666 7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
+++++.+++++...+. |...|+-+...+.+.|+..+ +..+.+++.+.+ -..+...+..++.+|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 8888888888877665 77777777777777776444 445666555432 1236777888888888888888888888
Q ss_pred HHHHH
Q 006624 360 NKMEA 364 (638)
Q Consensus 360 ~~~~~ 364 (638)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=3.7e-08 Score=89.79 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 44556666777777777766666532211 1345566666677777777777776666544
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=3.2e-07 Score=86.62 Aligned_cols=153 Identities=7% Similarity=0.036 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------
Q 006624 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE--DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR------ 351 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------ 351 (638)
+++++++++++++.+..+. +..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 3445555555555544433 4444444444444444444 555555555554433 44444444444444443
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
++++++.++.+..... -|...|+.+-..+...+...+.+..+..++...+ -+.++..+..+.+.+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 5555555555544332 1444444444444444443333333333333211 133566677777777777777777777
Q ss_pred HHHHHh
Q 006624 430 LEEMEE 435 (638)
Q Consensus 430 ~~~~~~ 435 (638)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777765
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=4.8e-08 Score=89.00 Aligned_cols=189 Identities=9% Similarity=-0.064 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-H-HHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-M-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-A-NTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~ 199 (638)
+...+..+...+.+.|++++|+..|+.++..... + ....+..+..++.+.|++++|+..|+++.+..+... . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667778888899999999999998875321 1 235778888899999999999999999887643321 1 2455
Q ss_pred HHHHHHHh------------------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 200 SMILMLMQ------------------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 200 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.+..++.+ .|++++|+..|+++++..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN--SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT--CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC--ChhHHHHHHHH----------HHHHHHH----
Confidence 55555554 56788888888888876642 22222111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567778888999999999998887644311 24677788888999999999999988877643
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=4.2e-08 Score=91.51 Aligned_cols=181 Identities=15% Similarity=0.075 Sum_probs=104.4
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 179 ALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
|+..|+++.+.+ .++..++..+..++...|++++|++++.+.+..++..-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665543 3345555566677777777777777777766554311345566666777777777777777777776
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006624 259 ENGLQP-----TAKIYTTLVSIY--FKLG--EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 259 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 244444454442 2223 6777777777765542 3322333333466677777777777765544
Q ss_pred cC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 330 EG---------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 330 ~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
.- -+-|..+...+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02245555455555555565 6677777776643
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=5.3e-08 Score=87.70 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=73.8
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 442 PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG----RLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
+.++..+...|...+++++|.+.|++..+.+ +...+..+...|.. + ++++|...|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444444444444444444444444432 23334444444443 3 4455555555444432 3334444
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006624 518 LMSGMVR----AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTI 588 (638)
Q Consensus 518 l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 588 (638)
|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|...|++..+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 4444443 44555555555555544311 014444455555554 44555555555555543 1223344444
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 006624 589 LGCLSRA-G-----MFEEAARLMKDMNAKG 612 (638)
Q Consensus 589 ~~~~~~~-g-----~~~~A~~~~~~m~~~~ 612 (638)
...|... | ++++|..++++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444432 2 5555655555555544
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=2.4e-09 Score=90.48 Aligned_cols=141 Identities=10% Similarity=-0.037 Sum_probs=67.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+...|++++|+..++...... +.++..+..+...|.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 334445555555555443321 112233444555555555555555555555544322 455555555555555555555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL-FDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+..|++.++..+ .+...+..+...+.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 85 ~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 555555555443 3444555555555555555444333 34444432 123444444444444433
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=6.5e-09 Score=90.70 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=97.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-H
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-F 241 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 241 (638)
+......+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|+..|+++.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 445556666777777777777766554322 56667777777777777777777777766544 222222221111 1
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A 320 (638)
...++..+|++.+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566666666542 2246667777777777777777777777777665432 345666667777777777777
Q ss_pred HHHHHHHHH
Q 006624 321 YGLFMNMLK 329 (638)
Q Consensus 321 ~~~~~~~~~ 329 (638)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=2.8e-09 Score=90.14 Aligned_cols=110 Identities=7% Similarity=-0.011 Sum_probs=49.4
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006624 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
...|++++|+..+.+.....+. +...+..+...|.+.|++++|++.|++.++..+ .+..+|..+...+.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCchHHH
Confidence 3344455555555544433111 223334444455555555555555555544443 3444444444444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 251 IRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+..|++..+.. +-+..++..+...|.+.|++++
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 55444444432 1134444444444444444443
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=8.1e-08 Score=86.48 Aligned_cols=176 Identities=14% Similarity=0.011 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHH
Q 006624 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRL 253 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 253 (638)
+|.+.|++..+.| ++.++..+...|...+++++|++.|++..+.+ +...+..|...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3555666665542 56666666666666677777777777766643 34555556666655 5 66777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006624 254 FDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCA-LTVYTYTELIKGLGR----AGRVEDAYGLF 324 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 324 (638)
|++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77766654 55666666666665 66777777777777665431 015566666666666 66777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 006624 325 MNMLKEGCKPDIVLINNLINVLGRA-G-----RLEDALKLFNKMEALQ 366 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 366 (638)
++..+.+ .+...+..|...|... | +.++|..+|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7776651 2334555566666542 2 6777777777766644
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=9.8e-09 Score=89.54 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-L 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 205 (638)
.+......+.+.|++++|...++..++.. +.++..+..+...+.+.|++++|+..|+++.+..+ +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 45667788889999999999998877643 55678888999999999999999999998877633 55444333322 2
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
...+...+|++.|++.....+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344457888999888775 568888999999999999999999999998864322 35688889999999999999
Q ss_pred HHHHHHHHHh
Q 006624 285 ALGLVQEMKG 294 (638)
Q Consensus 285 A~~~~~~m~~ 294 (638)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=2.9e-08 Score=104.55 Aligned_cols=156 Identities=8% Similarity=-0.064 Sum_probs=111.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|...+++.++.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888877643 456778888888888888888888888888877433 678888888888888888888888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006624 218 YNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---GEVEKALGLVQEMKG 294 (638)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 294 (638)
|++..+..+ .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888888765 567788888888888888888888888888763 33577788888888888 888888888888887
Q ss_pred CCCC
Q 006624 295 KGCA 298 (638)
Q Consensus 295 ~~~~ 298 (638)
.++.
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 7654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=3e-08 Score=104.48 Aligned_cols=153 Identities=10% Similarity=-0.030 Sum_probs=116.6
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++.+.|+..|+.+.... +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+...+.+.|++++|...
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677888888776543 4578889999999999999999999999988854 55678889999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHH
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRDISAIRLFDEMKE 259 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 259 (638)
|++..+..+. +...+..+..+|.+.|++++|.+.|++..+..+ .+...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998877433 688889999999999999999999999988775 5678888888999888 999999999999888
Q ss_pred CC
Q 006624 260 NG 261 (638)
Q Consensus 260 ~g 261 (638)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=3.2e-08 Score=93.93 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH-H
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN-S 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 200 (638)
+.+...+..+...+.+.|++++|...+++.+... +.++..+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4466788889999999999999999999998864 5678899999999999999999999999998763 4444333 3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 279 (638)
....+.+.++.++|++.|++.....+ .+...+..+...+...|++++|++.|+++.+..... +...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33447788889999999999999876 688899999999999999999999999999864221 267899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006624 280 GEVEKALGLVQEMK 293 (638)
Q Consensus 280 g~~~~A~~~~~~m~ 293 (638)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998887754
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=4.8e-07 Score=86.18 Aligned_cols=164 Identities=13% Similarity=0.053 Sum_probs=107.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDEMKENGLQ-PT----AKIYTT 271 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ 271 (638)
.+..+...|++++|.+.+++........|+.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566677777777777777766443223321 2334555666667777777777777763221 12 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKG----K-GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 340 (638)
+...|...|++++|+..++++.+ . +..+ ...++..+...|.+.|++++|+..+++.++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77788888888888888877763 1 1111 2336777788888888888888888877653 22222 56788
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHH
Q 006624 341 NLINVLGRAG-RLEDALKLFNKMEA 364 (638)
Q Consensus 341 ~l~~~~~~~g-~~~~A~~~~~~~~~ 364 (638)
.+..+|.+.| ++++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888888 46888888887654
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=3.5e-06 Score=80.30 Aligned_cols=229 Identities=12% Similarity=0.041 Sum_probs=149.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
.+-..+.+.+..++|+++++.++..+ +-+..+++.--..+...| .+++++.+++.+....++ +..+|+.....+.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33333444444567777777777643 445566666666666667 488888888888777554 777777777776665
Q ss_pred -C-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 209 -G-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--------SAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 209 -g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
+ +++++++.++++.+..+ .|...|+.-.-.+.+.|.++ ++++.++++++.. +-|..+|+.....+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 6 77788888888887665 56666665555555555555 7788888887764 3477777777777777
Q ss_pred cCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC
Q 006624 279 LGE-------VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV--------------------EDAYGLFMNMLKEG 331 (638)
Q Consensus 279 ~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~ 331 (638)
.++ ++++++.+++.....+. |...|+-+-..+.+.|+. .+......++...+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 665 67788888877776655 777776655555555543 22222222332221
Q ss_pred -----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 332 -----CKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 332 -----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..+.......+++.|...|+.++|.++++.+.+
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 135677888888888888888888888888754
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=1.3e-07 Score=90.78 Aligned_cols=200 Identities=11% Similarity=-0.000 Sum_probs=115.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|.+++++..+... .+ .+...+++++|...|.+. +..|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4556666666666554211 00 011135666666665553 3345566777777777
Q ss_pred HHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 218 YNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGL 288 (638)
Q Consensus 218 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 288 (638)
|.+.........+ ..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7665543211011 345666667777777777777777766542 1110 13456667777766 777777777
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 006624 289 VQEMKGKGCAL-----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 289 ~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 358 (638)
|++..+..... ...++..+...+.+.|++++|+..|++.++. +..+. ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77765431110 1346667777777788888888777777653 11111 12455566666677888888888
Q ss_pred HHHHH
Q 006624 359 FNKME 363 (638)
Q Consensus 359 ~~~~~ 363 (638)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77776
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=4.5e-07 Score=81.67 Aligned_cols=129 Identities=14% Similarity=0.038 Sum_probs=82.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+...|++++|...|++.. .|+...|..+...+.+.|++++|++.|++.....+ .+...+..+...+.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHH
Confidence 3344555666666666666666553 34566666666666666666666666666666554 45566666666666
Q ss_pred ccCChHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 243 KLGRDISAIRLFDEMKENGLQ--------------P-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
..|++++|++.|++..+.... | ....+..+...+.+.|++++|.+.+++..+..+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 667777776666666654211 1 125667777777777777777777777776644
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=3.2e-06 Score=80.41 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=116.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHH
Q 006624 448 LINGYGKAKRYEAANELFLELKEYCGC-SS----ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK-PD----VYTYNA 517 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 517 (638)
.+..+...|++++|...+++..+.... ++ ...+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677778888888888877764221 22 113345666777778889999999888774222 22 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC-HHHHH
Q 006624 518 LMSGMVRAGMIDDAYSLLRRMEED-----GCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQH----SEIKPD-AVSYN 586 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~ 586 (638)
+...|...|++++|+..|+++++. +..+. ..++..++..|.+.|++++|..++++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888841 11122 34778888999999999999999998774 222223 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHh
Q 006624 587 TILGCLSRAG-MFEEAARLMKDMNA 610 (638)
Q Consensus 587 ~l~~~~~~~g-~~~~A~~~~~~m~~ 610 (638)
.+..++.+.| ++++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8999999999 46999998888764
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=5.8e-06 Score=78.78 Aligned_cols=139 Identities=12% Similarity=0.036 Sum_probs=75.7
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-C-ChH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL-G-RDI 248 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 248 (638)
+.+..++|+++++++...++. +..+|+.....+...| .++++++.++.++..++ .+..+|+.-...+.+. + +.+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCCChH
Confidence 334445677777776666443 5566666666666666 36667777776666554 4555555555554444 4 556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE--------KALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
+++++++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.+
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 6666666666543 235555554444444433333 555555555554443 4444544444444444
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=2.6e-07 Score=75.09 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+...+..|.+.|++++|++.|++.++..+ .+...|..+..++.+.|++++|++.+++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 344455555555555555555555555443 345555555555555555555555555555432 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 006624 277 FKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~ 296 (638)
...|++++|++.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 55555555555555555443
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=3.1e-07 Score=88.13 Aligned_cols=202 Identities=10% Similarity=-0.008 Sum_probs=126.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCCHh
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR----KCK-PTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~ 212 (638)
.+++++|...|... ...|...|++++|...|.+..+. +.. .-..+|+.+...|.+.|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35666666665543 34556667777777776665432 100 01346777777788888888
Q ss_pred HHHHHHHHHHhCCCCC--CC--HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCCHH
Q 006624 213 KIHELYNEMCNEGNCF--PD--TVTYSALISAFGKLGRDISAIRLFDEMKENGLQ---P--TAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~g~~~ 283 (638)
+|++.|++.+...... +. ..++..+...|.. |++++|++.|++..+.... + ...+++.+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 8888887765432110 11 3466777777877 8888888888877653100 0 1457788888888999999
Q ss_pred HHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHHH
Q 006624 284 KALGLVQEMKGK----GCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-D---IVLINNLINVLGRAGRLED 354 (638)
Q Consensus 284 ~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~~g~~~~ 354 (638)
+|++.|++.... +..+. ...+..++..+...|++++|...|++.+ ..+.. + ......++..+ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999988887753 11111 2356666777778899999999999888 42211 1 12334445544 4566655
Q ss_pred HHH
Q 006624 355 ALK 357 (638)
Q Consensus 355 A~~ 357 (638)
+.+
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=5.3e-08 Score=92.06 Aligned_cols=100 Identities=6% Similarity=-0.111 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666666666666666666666666542 335566666666666666666666666666655332 5566666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|+..|++.....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666666666666665543
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=1.2e-06 Score=83.34 Aligned_cols=165 Identities=10% Similarity=0.035 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---CCC--
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKC---KPT-- 194 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-- 194 (638)
..+...+..+...|++++|.+.+++.+..... .. ..+..+...+...|++++|+..|++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455566667777777777777766654211 11 1233344455556666666666666553211 111
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC----CCC-
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMC---NEGNCFP--DTVTYSALISAFGKLGRDISAIRLFDEMKENG----LQP- 264 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~- 264 (638)
..+|+.+...|...|++++|++.|+++. +..+..+ ...++..+...|...|++++|++.+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3456666666666666666666666655 2111001 11355555555556666666666555554321 000
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 006624 265 TAKIYTTLVSIYFKLGEVEKA-LGLVQE 291 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A-~~~~~~ 291 (638)
-..+|..+...|.+.|++++| ...+++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 033445555555555555555 444443
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=5.8e-07 Score=80.88 Aligned_cols=131 Identities=9% Similarity=-0.081 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..+..+...+...|++++|...+++.+ .+++.++..+...+.+.|++++|+..|++..+..+ .+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 445677888899999999999998763 56888999999999999999999999999987753 3788999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC--------------CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFP--------------DTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
...|++++|++.|++..+..+..+ ....+..+...+.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998664211 23778889999999999999999999999864
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=4e-07 Score=73.92 Aligned_cols=97 Identities=11% Similarity=-0.009 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.|......+.+.|++++|+..|++.++.. +.++.++..+..+|.+.|++++|+..|++..+.++. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 44444555555555555555555554432 334445555555555555555555555555444322 4445555555555
Q ss_pred hcCCHhHHHHHHHHHHhCC
Q 006624 207 QEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~ 225 (638)
..|++++|++.|++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 5555555555555555444
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=4.1e-07 Score=78.02 Aligned_cols=128 Identities=9% Similarity=-0.118 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..+... +.+..++..+...+...|++++|...|++..+..+ .+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345555566666666666666666655532 33455555555566666666666666665555432 2455555555556
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTY--SALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
...|++++|.+.|+++....+ .+...+ ...+..+.+.|++++|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666555443 233333 22222244445555555555443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=6.3e-07 Score=76.83 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555555555555555555443 344555555555555555555555555555432 22444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTE--LIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~ 327 (638)
...|++++|.+.+++..+..+. +...+.. .+..+...|++++|+..++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555544332 3333322 222244455555555555443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=2.3e-06 Score=81.41 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHCCC---CCC--HH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKENGL---QPT--AK 267 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~ 267 (638)
.+...+..+...|++++|.+.+++..+..+..++. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34445566667777777777777666644321111 1233445556666777777777777764321 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKG---KGCA-L--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----CKP-DI 336 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 336 (638)
+++.+...|...|++++|+..+++..+ .... + ...++..+...|...|++++|+..+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777788888888888888877662 2111 1 12467777788888888888888888776531 111 15
Q ss_pred HHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 006624 337 VLINNLINVLGRAGRLEDA-LKLFNKMEA 364 (638)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 364 (638)
.++..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6777888888888888888 666776543
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=8.7e-07 Score=71.54 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|.+.|+++....+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3444444455555555555555555544332 334444444444455555555555555444432 2234444444445
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006624 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555444443
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=1.2e-07 Score=89.55 Aligned_cols=193 Identities=11% Similarity=-0.015 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.+++..+..+ .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4567778888888999999999999988876433 788888888999999999999999999888765 5778888888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
.++...|++++|...|++..+.. |+ ...+...+....+. .++.. +..........+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 88999999999999988877642 21 11111122211111 11111 1112222233344443333222 26788
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 006624 318 EDAYGLFMNMLKEGCKPDI-VLINNLINVLGRA-GRLEDALKLFNKMEA 364 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 364 (638)
++|++.++...+. .|+. .....+...+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888777664 3333 3333344444444 557778888877654
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=2.5e-07 Score=82.52 Aligned_cols=156 Identities=8% Similarity=-0.005 Sum_probs=70.0
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHccCCh
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG----NCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..|++++|.+.++.+.. .......++..+...+...|++++|.+.+++..... ........+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 112244555555566666666666666665554411 0001223445555555555555
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC
Q 006624 248 ISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCA-LTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 248 ~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 316 (638)
++|.+.+++..+. +..+ ...++..+...+...|++++|...+++.... +.. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555554432 1011 1233445555555555555555555554321 100 001223444445555555
Q ss_pred HHHHHHHHHHHH
Q 006624 317 VEDAYGLFMNML 328 (638)
Q Consensus 317 ~~~A~~~~~~~~ 328 (638)
+++|...+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1.4e-06 Score=70.32 Aligned_cols=99 Identities=10% Similarity=0.069 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3445555555555555555555555555432 33444555555555555555555555555544322 244455555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCC
Q 006624 205 LMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...|++++|...|+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 555555555555555555443
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=3.2e-07 Score=76.92 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+.+.|++++|++.|+++....+ .+...|..+..++...|++++|++.|++..+.. +.+...|..+..+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 344444444445555555555555444443 344444444444444444444544444444432 12344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006624 277 FKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~ 295 (638)
.+.|++++|.+.|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 4445555555444444443
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=3.3e-07 Score=84.29 Aligned_cols=191 Identities=8% Similarity=-0.014 Sum_probs=143.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhcCCHhHHHHHHHHHHhCCCCC----CC----------
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSM-------ILMLMQEGYYEKIHELYNEMCNEGNCF----PD---------- 230 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~---------- 230 (638)
..++.+.|.+.|.++.+..+. ....|+.+ ...+.+.++..+++..+.......+.. -+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578999999999999887544 77888888 577777777777777777766522100 00
Q ss_pred -----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 006624 231 -----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYT 303 (638)
Q Consensus 231 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~ 303 (638)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 2234456778888999999999999888754 544477777889999999999999998665432 111 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77788899999999999999999885433253 3466778888999999999999999998754
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=8.4e-07 Score=72.68 Aligned_cols=100 Identities=10% Similarity=-0.045 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|...++..++.. +.+..++..+...+...|++++|+..|++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 45566666666666666666666666665532 334555555555666666666666666655554222 4555555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.+.|++++|.+.|++.....
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 5666666666666666555543
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=8.6e-07 Score=74.30 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|+++.+..+. +...|..+..+|...|++++|++.|++.....+ .+...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcHHHHHHH
Confidence 3456777778888888888888888888877543 788888888888888888888888888888775 5667788888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
.++.+.|++++|++.|++..+.. |+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 88888888888888888888753 554
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=8.9e-07 Score=72.52 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|++.|++..+..+ .+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHHHHH
Confidence 3445555666666666666666666666554322 455555666666666666666666666655443 3455555555
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...|++++|.+.|++..+.. +.+...+..+..++.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 55556666666666665555432 1123344444444433
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=9e-07 Score=72.15 Aligned_cols=118 Identities=10% Similarity=-0.075 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++..+... +.+...+..+...+...|++++|...+++..+..+ .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3455555555555666666666655555432 33445555555555555555555555555544422 134455555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
+...|++++|.+.|++.....+ .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhc
Confidence 5555555555555555555443 334444444444444443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1.3e-06 Score=71.13 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|.+.|++.....+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444444444555555555544444332 234444444444444444444444444444431 12334444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
...|++++|.+.+++..+..+. +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 4444444444444444443322 3334444444443333
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=2.2e-06 Score=78.82 Aligned_cols=190 Identities=8% Similarity=-0.079 Sum_probs=121.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHhhC------------CC------
Q 006624 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEI-------VNILGKAKMVNKALSIFYQIKSR------------KC------ 191 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~------ 191 (638)
+.++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5677777777777777653 4445566655 45555555555555555554441 10
Q ss_pred --CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HH
Q 006624 192 --KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AK 267 (638)
Q Consensus 192 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~ 267 (638)
..-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0002334456677777888888888888777654 433355666667778888888888887554421 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.+..+..++...|++++|++.|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 667777888888888888888888774332143 3355666677788888888888888888764
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=7.3e-07 Score=79.44 Aligned_cols=134 Identities=11% Similarity=-0.012 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKL----RCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVP-- 545 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-- 545 (638)
..++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444444555555555555555444331 1111 1334555556666666666666666655542 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
....+..+...+...|++++|...+++.... +... -..++..+..++...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1234555666666667777777766665531 1100 122345666677777777777777766553
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=1.2e-06 Score=73.38 Aligned_cols=100 Identities=6% Similarity=-0.154 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44555666666666777777777776666543 445666666666666666777777666666655332 5556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6666666666666666666544
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=1.8e-06 Score=83.82 Aligned_cols=124 Identities=6% Similarity=-0.066 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG--------------PSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+...|..+...+.+.|++++|...|++.+....... ..++..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777766431111 244444444455555555555555544443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006624 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
.+. +..+|..+..+|...|++++|++.|+++++..+ .+...+..+...+.+.|+.++|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 222 444444444445555555555555554444433 3334444444444444444444
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=5.6e-07 Score=75.52 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...+..+...+.+.|++++|+..|+++....+ .+...|..+..++...|++++|++.|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34444555555555555555555555555443 345555555555555555555555555555542 224455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006624 275 IYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.7e-06 Score=83.90 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--------------ANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|++.|++++...
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555666666666666666666666665533211 3556666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
+ .+...|..+..++...|++++|+..|++..+.. +.+..++..+..++.+.|+.++|
T Consensus 227 p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 S--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 455555566666666666666666666655542 22445555555555555555555
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=7.7e-07 Score=77.40 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH--hHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-LMQEGYY--EKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 214 (638)
.|++++|...++..+... +.+...+..+...+...|++++|...|++..+..+. +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 334444444444443321 233344444444444444444444444444433211 33344444444 3344444 444
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+..|+++....+ .+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444332 2333444444444444444444444444444
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=9.7e-07 Score=76.77 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=76.3
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHccCCh--
Q 006624 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-FGKLGRD-- 247 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 247 (638)
...|++++|...|++..+..+ .+...|..+...|...|++++|+..|+++....+ .+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 345666777777776665533 2566777777777777777777777777766554 455566666666 5566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
++|...++++.+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777766653 2345566666666677777777777776666654
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=9e-05 Score=70.28 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-hHHHHH
Q 006624 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY--YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR-DISAIR 252 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 252 (638)
+++++.+++.+....++ +..+|+.-...+.+.|+ ++++++.++++.+..+ .|...|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 56677777777665444 66777776666666663 6777777777777665 566666666666666666 477777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 006624 253 LFDEMKENGLQPTAKIYTTLVSIYFKL--------------GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA---- 314 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 314 (638)
.++++++.. +-|..+|+.....+.+. +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 777777654 33666666665555544 3466777777777766554 666665433333333
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHH
Q 006624 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLIN---VLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 364 (638)
+.++++++.++++.+..+. +...+..++. .....+..+++...+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3466777777777775332 2222222221 11234556666677777665
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=1.9e-07 Score=83.03 Aligned_cols=120 Identities=10% Similarity=-0.049 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...+..+...+.+.|++++|++.|++.....+..++ ...+..+...+.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445566666677777777777777777664432121 133444444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
. +.+...+..+..+|...|++++|.+.|++..+..+. +...+..+..++...++
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKE 171 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHH
Confidence 1 223444444444444444444444444444443222 33334444333333333
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.8e-06 Score=68.97 Aligned_cols=96 Identities=9% Similarity=-0.046 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|......+.+.|++++|...|++.++.. +.++..+..+..++.+.|++++|+..|++..+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344445555555555555555555554432 334445555555555555555555555555444322 344555555555
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 006624 206 MQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~ 223 (638)
...|++++|++.|++...
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555555544
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=7.9e-06 Score=64.93 Aligned_cols=97 Identities=18% Similarity=0.056 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444455555555555555555555554433 344445555555555555555555555554432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006624 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555544
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.9e-06 Score=68.02 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.|..+...+.+.|++++|++.|++.++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444445555555555555444433 334444444444444444444444444444432 12344444444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 006624 277 FKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~ 294 (638)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 445555555544444443
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=3.2e-06 Score=72.32 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|+..|+..+... +.+...+..+..+|.+.|++++|+..|++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45678888888888899999988888888754 557788888888888888888888888888877543 6788888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+|...|++++|++.|++.++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888876653
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=8.3e-06 Score=64.80 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..+... +.++..+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345555555555555555555555555432 334455555555555555555555555555444221 444555555555
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 006624 206 MQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~ 225 (638)
...|++++|.+.|++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 55555555555555555543
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=2.2e-06 Score=71.26 Aligned_cols=100 Identities=8% Similarity=-0.118 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34455566666677777777777777766643 445666666677777777777777777776665433 5566666667
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777666544
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=4.3e-06 Score=67.90 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
+.+.+.|++++|+..|++..+..+. +...|+.+..+|.+.|++++|++.|++.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3333334444444444333333211 3333333444444444444444444433
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=0.00035 Score=66.23 Aligned_cols=219 Identities=6% Similarity=-0.010 Sum_probs=166.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 006624 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRM----------IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.+.|+.++..+.... +.+..+|+.--.++...+. ++++...++.++... +-+..+|+--...+.+.|
T Consensus 46 s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 357888888776554 4567788877666655444 678888888888754 667888888777777877
Q ss_pred --CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-------
Q 006624 175 --MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL------- 244 (638)
Q Consensus 175 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 244 (638)
.+++++.+++++.+..+. |..+|+...-++...|. ++++++.+++++..++ .|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHSCCC---
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhhhccccc
Confidence 489999999999988655 88999998888888888 6999999999999886 6888887776666655
Q ss_pred -------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 245 -------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL-----------GEVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 245 -------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
+.++++++.+...+... +-|..+|+.+-..+.+. +.++++++.++++.+..+. +...+..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~ 277 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLT 277 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHH
Confidence 45789999999998764 45788888776666665 4588999999999987654 4444433
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHHcC
Q 006624 307 LIK---GLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 307 li~---~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++. .....|..+++...+.++++..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 332 2234677888888999988753
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=6.2e-06 Score=66.95 Aligned_cols=106 Identities=5% Similarity=-0.061 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CC----HHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
..+|..+...+.+.|++++|+..|++.+... +.+...|..+..+|.+.|++++|+..|++..+..+. ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4578889999999999999999999998864 567889999999999999999999999998765221 11 3467
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..+..++...|++++|++.|++.+... ||....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF---RDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---CCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC---cCHHHH
Confidence 788888999999999999999988754 555443
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=6.2e-06 Score=73.14 Aligned_cols=118 Identities=10% Similarity=-0.023 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----------------SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
..|..+...+.+.|++++|...|++.+... +.++ .++..+..++.+.|++++|+..+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455566667777777777777777766632 1111 34444444444555555555555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
.+ .+...+..+..+|...|++++|++.|++.....+ .+...+..+...+...++.
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHH
Confidence 21 1344444444444455555555555544444332 2333344444443333333
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=4.7e-06 Score=65.58 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--CHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP--DTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 239 (638)
.+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|++.|++..+..+ . +...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHHHHHHHHH
Confidence 3344444444455555555555444443221 344444455555555555555555555544432 2 3444444444
Q ss_pred HHHcc-CChHHHHHHHHHHHH
Q 006624 240 AFGKL-GRDISAIRLFDEMKE 259 (638)
Q Consensus 240 ~~~~~-g~~~~A~~~~~~m~~ 259 (638)
.+... |++++|.+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 45555 555555555544444
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=4.8e-06 Score=69.24 Aligned_cols=94 Identities=15% Similarity=-0.027 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+.+.|++++|...|+++....+. +...|..+..++.+.|++++|+..|++.....+ .+...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHH
Confidence 334444445555555555555555444222 444455555555555555555555555554443 33344444445555
Q ss_pred ccCChHHHHHHHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|.+.|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.7e-05 Score=66.17 Aligned_cols=101 Identities=7% Similarity=-0.138 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
.+...|..+...+...|++++|...|++.++. .|+ ...+..+...+...|++++|+..|++..+..+. +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 45677777888888888888888888887773 344 566777777777777788877777777665322 56677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
..+..++...|++++|...|++.....+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7777777777777777777777776553
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.1e-05 Score=66.37 Aligned_cols=94 Identities=14% Similarity=-0.034 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+..+...+...|++++|...|.+..+..+. +...|..+...+...|++++|+..|++.....+ .+...+..+...
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHHHHH
Confidence 33334444444444444444444443333211 333444444444444444444444444444332 233334444444
Q ss_pred HHccCChHHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEM 257 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m 257 (638)
+...|++++|...|++.
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 44444444444444433
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=7.8e-06 Score=67.30 Aligned_cols=102 Identities=6% Similarity=-0.111 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+...|..+...+...|++++|...|+..+... +.+...+..+..++...|++++|...|++..+..+. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3468899999999999999999999999998864 567889999999999999999999999999887544 78899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
..++...|++++|+..|++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999988754
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=5.6e-06 Score=65.16 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP--TAKIYTTL 272 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l 272 (638)
...+..+...+...|++++|...|++..+..+ .+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34445555555666666666666666555443 344555555555555555555555555555542 12 34455555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 006624 273 VSIYFKL-GEVEKALGLVQEMKGK 295 (638)
Q Consensus 273 i~~~~~~-g~~~~A~~~~~~m~~~ 295 (638)
...+.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555555 5555555555555544
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.9e-05 Score=78.39 Aligned_cols=197 Identities=10% Similarity=0.016 Sum_probs=125.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPT----------------ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT 231 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 231 (638)
+.+.+.|++++|++.|.++.+...... ..++..++..|.+.|++++|.+.+..+.......++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344555566666666555544321110 1235667788888888888888888766532221222
Q ss_pred ----HHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 006624 232 ----VTYSALISAFGKLGRDISAIRLFDEMKE----NGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCA 298 (638)
Q Consensus 232 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~ 298 (638)
...+.+...+...|+.+.|.++++.... .+..+. ..++..+...|...|++++|..++++.... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1233334444456788888888877653 222222 457778888899999999999888877543 111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 299 -LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GC-KP-D--IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 299 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
....++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12457778888899999999999988887652 11 11 1 23556667777888999998887776643
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=1.2e-05 Score=68.66 Aligned_cols=99 Identities=16% Similarity=-0.017 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.|++.+...+ .+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 3456777777788888888888888887776433 677788888888888888888888888877765 5677777888
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 006624 239 SAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+...|++++|.+.|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888877764
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.5e-05 Score=65.08 Aligned_cols=98 Identities=18% Similarity=0.047 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT----ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
+...+..+...+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|++.+++.....+ .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHHH
Confidence 4455566666666666666666666666654 233 45555666666666666666666666655543 345555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 235 SALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+...+...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55556666666666666666665553
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3e-05 Score=78.30 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=132.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-Cc
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEKGFPPC----------------PAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SS 476 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 476 (638)
...+.+.|++++|++.|.++.+...... ..++..++..|.+.|++++|.+.+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778888888888888876531111 123677888888889999988888877653111 11
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--
Q 006624 477 A----RVYAVMIKHFGKCGRLSDAVDLFNEMKK----LRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED--GC-- 543 (638)
Q Consensus 477 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 543 (638)
. .+.+.+...+...|++++|..+++.... .+..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444455567888888888877643 222222 456777888888999999999998887643 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 544 VP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHS--EI-KP-D--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 544 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1457788888889999999999998887641 11 11 1 24566667777888999998888777653
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=6.1e-06 Score=67.10 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+...+...|++++|...|++..+..+ .+...+..+...+...|++++|...|+++..
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 333344444444444444444433321 1333444444444444444444444444433
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=8e-06 Score=65.59 Aligned_cols=94 Identities=4% Similarity=-0.109 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006624 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
..+...+.+.|++++|+..++..++.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..++.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344445555555555555555555532 334455555555555555555555555555544322 444555555555555
Q ss_pred CCHhHHHHHHHHHHhC
Q 006624 209 GYYEKIHELYNEMCNE 224 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~ 224 (638)
|++++|+..|++.++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555543
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=8.2e-06 Score=66.29 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CC----HHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
...|..+...+...|++++|...++..+... +.+...+..+...+...|++++|...|++..+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4678889999999999999999999998864 567889999999999999999999999998776321 12 7788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
..+..++...|++++|.+.|+++.... |+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 889999999999999999999998865 55554444443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.26 E-value=7.3e-06 Score=65.82 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++.+...+ .+...+..+...+...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 3444455555555555555555544322 455555555555555555555555555555443 3444555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 006624 245 GRDISAIRLFDEMKE 259 (638)
Q Consensus 245 g~~~~A~~~~~~m~~ 259 (638)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=2.1e-06 Score=68.69 Aligned_cols=87 Identities=11% Similarity=-0.029 Sum_probs=44.6
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 138 TRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
.|++++|+..|++.++.+ -+.+..++..+..+|.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555532 1223345555555555556666666665555554332 4555555555555566666666
Q ss_pred HHHHHHHhCC
Q 006624 216 ELYNEMCNEG 225 (638)
Q Consensus 216 ~~~~~~~~~~ 225 (638)
+.|++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6555555544
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=6.3e-05 Score=60.92 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMIL 203 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 203 (638)
.+...+.+.|++++|...++.+++.. +.++ ..+..+..++.+.|++++|...|+++.+..+. + ..++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34455556666666666666655532 1222 35555555566666666666666665554222 2 444555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.+.|++++|.+.|+++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 5666666666666666655544
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=1.2e-05 Score=82.03 Aligned_cols=89 Identities=9% Similarity=-0.073 Sum_probs=39.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
.+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444431 223444444444444444444444444444443221 34444444444444444444
Q ss_pred HHHHHHHHHhC
Q 006624 214 IHELYNEMCNE 224 (638)
Q Consensus 214 A~~~~~~~~~~ 224 (638)
|++.|++..+.
T Consensus 93 A~~~~~~al~~ 103 (477)
T 1wao_1 93 ALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.2e-05 Score=68.16 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
++..+...+...|++++|.+.+++........++ ...+..+...+...|++++|.+.+++..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555555554432110011 2233444444444555555555444443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.5e-05 Score=67.50 Aligned_cols=135 Identities=12% Similarity=-0.055 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-C----C
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P----T 194 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~ 194 (638)
..++..+...+...|++++|...+++.+..... .+ ..++..+...+...|++++|...|++..+.... + .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 457888999999999999999999987764111 11 147888999999999999999999987653111 1 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
...+..+...+...|++++|.+.+++.........+ ...+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 557888889999999999999999988653211011 23455666666667777777777666554
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=8.7e-05 Score=60.05 Aligned_cols=92 Identities=8% Similarity=-0.030 Sum_probs=37.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFG 242 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 242 (638)
...+.+.|++++|...|+++.+..+. +. ..+..+..++.+.|++++|+..|+++....+..+. ...+..+...+.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 33444444444444444444433211 11 23344444444444444444444444443321000 233333444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|...|+++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444433
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=3.3e-05 Score=78.32 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...|..+..+|.+.|++++|+..|++++...+ .+...|..+..++...|++++|+..|+++.+.. +-+..++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555555555555666666666655555543 345555555555555666666666665555542 123445555555
Q ss_pred HHHhcCCHHHHH
Q 006624 275 IYFKLGEVEKAL 286 (638)
Q Consensus 275 ~~~~~g~~~~A~ 286 (638)
++.+.++.+++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=4e-05 Score=77.72 Aligned_cols=133 Identities=13% Similarity=0.056 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....|..+...+.+.|++++|+..|++.+...+..++ ...|..+..++.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445555555555555555555555555554321110 466777777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG-LFMNML 328 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~ 328 (638)
. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+..++.+.++.+++.+ .+..|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335677777777777777777777777777776543 55566677777777777766653 444443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=3.6e-05 Score=75.48 Aligned_cols=139 Identities=9% Similarity=-0.013 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+.+.|++++|+..|++.++.. +.. ......+ +..+.. ..+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 346666777777777777777777665510 000 0000000 000010 11445566666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
.+.|++++|++.++++++..+ .+...|..+..++...|++++|++.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666553 455666666666666666666666666666542 22455566666666666666555
Q ss_pred HH
Q 006624 286 LG 287 (638)
Q Consensus 286 ~~ 287 (638)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=0.00026 Score=73.42 Aligned_cols=172 Identities=11% Similarity=0.003 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..++|++.++++...++. +..+|+.-..++...|+ ++++++.++.+.+.++ .+..+|+.-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 345678888888776544 66777777777776666 7888888888888775 5677777777777777
Q ss_pred C--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 006624 245 G--RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG-EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA------- 314 (638)
Q Consensus 245 g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------- 314 (638)
| +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+.++. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 7 6688888888888764 347777887777777777 788888888888877665 777777766665542
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
+.++++++.+++.+...+. |...|+.+...+.+.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4567888888888876544 667777777777666653
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.6e-05 Score=81.06 Aligned_cols=122 Identities=15% Similarity=0.048 Sum_probs=98.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|++.|++..+..+ .+...+..+..++...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 3445667889999999999999887433 689999999999999999999999999999875 6788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006624 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSI--YFKLGEVEKALGLVQ 290 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 290 (638)
|++++|++.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998863 2245566666666 888999999999988
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=4.8e-05 Score=74.56 Aligned_cols=138 Identities=9% Similarity=0.032 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+.+.|++++|++.|++.++..+ +.. ..... ++..+. -+.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~~----------~~~~~-------~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GSR----------AAAED-------ADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHH----------HHSCH-------HHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cCc----------cccCh-------HHHHHH-HHHHHHHHHHHHHH
Confidence 4466777788888888888888888776210 000 00000 000000 01133445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 355 (638)
|.+.|++++|++.+++.++..+. +...|..+..+|...|++++|+..|++.++.... +...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554332 4555555555555555566665555555554322 444555555555555554444
Q ss_pred H
Q 006624 356 L 356 (638)
Q Consensus 356 ~ 356 (638)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=1e-05 Score=64.52 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=57.5
Q ss_pred hCCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 172 KAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
..|++++|+..|++..+.+ .+.+...+..+..+|...|++++|++.|++.++..+ .+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 3567777777777777653 122456677777777777777777777777777665 456667777777777777777
Q ss_pred HHHHHHHHHHC
Q 006624 250 AIRLFDEMKEN 260 (638)
Q Consensus 250 A~~~~~~m~~~ 260 (638)
|++.+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=6e-05 Score=62.40 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCC------C-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-------CC
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKP------T-----ANTYNSMILMLMQEGYYEKIHELYNEMCNE-------GN 226 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~ 226 (638)
.....+.+.|++++|+..|++..+..+.. + ...|+.+..++.+.|++++|+..|++.+.. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 33444445555555555555554432210 1 226677777777777777777777777665 43
Q ss_pred CCCCHHHH----HHHHHHHHccCChHHHHHHHHHHHH
Q 006624 227 CFPDTVTY----SALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 227 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.+...| .....++...|++++|+..|++..+
T Consensus 96 --d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 --DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344555 6666666677777777777766654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=6.3e-05 Score=63.97 Aligned_cols=100 Identities=5% Similarity=-0.099 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS-------TC----------VMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
...+......+.+.|++++|+..|...+.. .. +.+..++..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888888888888888887663 00 1112344444445555555555555555544
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 188 SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+..+. +...|..+..+|...|++++|+..|++.+...
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 44222 44444455555555555555555555544443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=7.7e-05 Score=63.39 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhC--------CC---------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSR--------KC---------KPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
..+......+.+.|++++|+..|.+.... .+ +.+...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666778888899999999988887664 00 11335667777777777777777777777777
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 224 EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+ .+...|..+..++...|++++|...|++..+.
T Consensus 92 ~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 56667777777777777777777777777764
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00066 Score=70.41 Aligned_cols=172 Identities=10% Similarity=0.056 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--
Q 006624 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGR----------LSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-- 526 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-- 526 (638)
++|.+.++.+... .+.+..+|+.-..++...|+ +++++..++.+.+.. +.+..+|+.-...+.+.|
T Consensus 46 eeal~~~~~~l~~-nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGA-NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHH-CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4445555555553 22334445544444444444 677777777776653 335566766666667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----------
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG-GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA---------- 595 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------- 595 (638)
+++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 568888888888876433 6777777777777777 778888888888765432 666777666666553
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccC
Q 006624 596 ----GMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635 (638)
Q Consensus 596 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (638)
+.++++.+.+++..... +-|...|..+-..+.+.+..++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788888888887642 3455677777777776665443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.93 E-value=2.5e-05 Score=75.69 Aligned_cols=150 Identities=9% Similarity=-0.046 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|+..+.. .|+.. .+...|+.+++...+. ...|+.+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345667777777888888888888877663 23322 1122233333332211 1367777788
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI-YFKLGEVE 283 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~ 283 (638)
|.+.|++++|+..|++.+...+ .+...|..+..++...|++++|.+.|++..+.. +-+...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877664 567778888888888888888888888876542 1244455555554 33455667
Q ss_pred HHHHHHHHHHhCC
Q 006624 284 KALGLVQEMKGKG 296 (638)
Q Consensus 284 ~A~~~~~~m~~~~ 296 (638)
++.+.|..|....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7777887777653
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=0.00015 Score=59.97 Aligned_cols=100 Identities=8% Similarity=-0.038 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhhC----
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM------GPS-----VLSEIVNILGKAKMVNKALSIFYQIKSR---- 189 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 189 (638)
...+......+.+.|++++|+..|+..++..... +.. .|+....++.+.|++++|+..|++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3466778888999999999999999998853221 233 8999999999999999999999999886
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 190 ---KCKPTANTY----NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 190 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+. +...| .....++...|++++|++.|++.++..
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 543 67788 999999999999999999999998754
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=3.6e-05 Score=74.60 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+.+.|++++|+..|++.+... |+... +...|+.+++...+. ..+|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345556666666677777777777666543 33221 112222222222110 1245555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHH
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV-LGRAGRLED 354 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 354 (638)
|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++.++.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555554332 4555555555666666666666666555543221 23333333333 223344455
Q ss_pred HHHHHHHHHH
Q 006624 355 ALKLFNKMEA 364 (638)
Q Consensus 355 A~~~~~~~~~ 364 (638)
+...|..+..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 5555555543
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.0004 Score=56.96 Aligned_cols=82 Identities=11% Similarity=-0.051 Sum_probs=33.0
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----A 314 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 314 (638)
..+.+++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3333444444444444432 33344444444443 344444444444444332 23333333333333 3
Q ss_pred CCHHHHHHHHHHHHHc
Q 006624 315 GRVEDAYGLFMNMLKE 330 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~ 330 (638)
+++++|..+|++..+.
T Consensus 111 ~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 111 KNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHC
Confidence 4444444444444433
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=7.9e-05 Score=75.40 Aligned_cols=124 Identities=8% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HhCCCHHHHHHHHHHHhhC-----CCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCCH-HHHHHH
Q 006624 171 GKAKMVNKALSIFYQIKSR-----KCK-P-TANTYNSMILMLMQEGYYEKIHELYNEMCNE-----GNCFPDT-VTYSAL 237 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~l 237 (638)
..+|++++|+.++++..+. |.. | ...+++.|..+|...|++++|..++++.+.. |+.+|++ .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3556666666666555331 111 1 2345666666777777777776666665422 4433443 456677
Q ss_pred HHHHHccCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 238 ISAFGKLGRDISAIRLFDEMKEN-----GL-QP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
...|...|++++|..++++..+. |. .| ...+.+.+..++...+.+++|+.++..+.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665531 21 11 133455566666677777777777777765
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00083 Score=55.03 Aligned_cols=81 Identities=9% Similarity=-0.047 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cC
Q 006624 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AG 596 (638)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g 596 (638)
.+.+++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| ++..+..|...|.. .+
T Consensus 38 g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 38 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence 333444444444444432 33334444444443 344444444444444332 23333444444444 44
Q ss_pred CHHHHHHHHHHHHhC
Q 006624 597 MFEEAARLMKDMNAK 611 (638)
Q Consensus 597 ~~~~A~~~~~~m~~~ 611 (638)
++++|.+++++..+.
T Consensus 112 d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 112 NEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 444444444444443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.00015 Score=73.27 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHhcCCHhHHHHHHHHHHhC-----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNE-----GNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKEN-----G-LQP-TAKIYTT 271 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~ 271 (638)
+..+|++++|+.++++.+.. |+..|+ ..+++.|...|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666665432 222222 234566666666666666666666555431 1 011 1334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~ 293 (638)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=4.7e-05 Score=59.70 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|++.|++.+...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4444445555555555555555555444222 44555555555555555555555555555543
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=0.00016 Score=57.11 Aligned_cols=78 Identities=6% Similarity=-0.009 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 144 MWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
|+..+++.++.. +.+...+..+...+...|++++|+..|++..+..+. +...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 334455555555555555555555555555544322 445555555555555555555555555544
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.67 E-value=0.0001 Score=60.87 Aligned_cols=84 Identities=7% Similarity=-0.001 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY----------EKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
+.+++|...+++..+..+. +...|+.+..++.+.+++ ++|+..|++.++..+ .+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHH
Confidence 3445555555555544332 555555555555554443 356666666655554 345555555555554
Q ss_pred cC-----------ChHHHHHHHHHHHHC
Q 006624 244 LG-----------RDISAIRLFDEMKEN 260 (638)
Q Consensus 244 ~g-----------~~~~A~~~~~~m~~~ 260 (638)
.| ++++|++.|++.++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 43 555666666655553
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00046 Score=51.45 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|++.|++....
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 333344444444444444444444333211 3334444444444444444444444444443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00015 Score=55.70 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
++..+..+...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555555555555544322 344555555555555555555555555544
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00045 Score=54.50 Aligned_cols=79 Identities=5% Similarity=-0.042 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006624 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+|+..|++..+..+. +...+..+...|...|++++|+..|++.....+ .+...|..+...+...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666555332 566666666777777777777777777666554 45556666666666666666666666666
Q ss_pred HH
Q 006624 258 KE 259 (638)
Q Consensus 258 ~~ 259 (638)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00055 Score=53.34 Aligned_cols=88 Identities=8% Similarity=0.010 Sum_probs=49.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------HH
Q 006624 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-------AV 583 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 583 (638)
+...+..+...+...|++++|++.|++.++.. +.+...+..+..++.+.|++++|++.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455566666666666666666666666542 224566666666666666666666666666643 233 33
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 006624 584 SYNTILGCLSRAGMFEEA 601 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A 601 (638)
.+..+..++...|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhHhhh
Confidence 344444444444444444
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00018 Score=59.38 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=72.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM----------VNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+.+++++|.+.++..++.. +.++..++.+..++.+.++ +++|+..|++..+..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34556677777777776653 5566777777777776665 45999999999887554 778899999999
Q ss_pred HhcC-----------CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 206 MQEG-----------YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 206 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...| ++++|++.|++.++.. |+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~---P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 8774 8999999999999976 55555544433
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.00063 Score=50.69 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..+...+...|++++|+..|++.....+ .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345566666777777777777777777766554 455666666677777777777777777666542 22445555555
Q ss_pred HHHHh
Q 006624 274 SIYFK 278 (638)
Q Consensus 274 ~~~~~ 278 (638)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.0016 Score=49.68 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...+..+...|.+.|++++|++.|++.++..+ .+...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777777777777777664 4555677777777777777777777776654
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.92 E-value=0.0097 Score=56.61 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 345555555555555556666666665555554 35555555555555566666666666555554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.87 E-value=0.076 Score=50.54 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 006624 298 ALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT 376 (638)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 376 (638)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.|++....+ |...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHH
Confidence 3477888888777777899999999999998875 677788888888888999999999998888754 66666543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0061 Score=60.48 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCCC-HHHHHHHHHH
Q 006624 526 GMIDDAYSLLRRMEED---GCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQH-----SE-IKPD-AVSYNTILGC 591 (638)
Q Consensus 526 g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~l~~~ 591 (638)
|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++..+ .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11122 34556666666666666666666666543 12 1222 3457777777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006624 592 LSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~ 609 (638)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777777655
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.86 E-value=0.017 Score=43.07 Aligned_cols=69 Identities=4% Similarity=-0.031 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
+.++..+..+..++...++ .++|..++++..+..+. ++.+...+...+.+.|++++|+..|+++....+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555543333 46666666666655433 556666666666666666666666666666543
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.69 E-value=0.091 Score=47.86 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 006624 247 DISAIRLFDEMKENGLQPT---AKIYTTLVSIYFKL-----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA-GRV 317 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 317 (638)
...|...+++.++. .|+ ...|..|...|.+. |+.++|.+.|++.++.++.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35677777777774 355 55788888888874 88888888888888776543466777777777774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHH
Q 006624 318 EDAYGLFMNMLKEGCK--PDIVLINN 341 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~--p~~~~~~~ 341 (638)
++|.+.+++.+...+. |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887655 66544443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0084 Score=59.51 Aligned_cols=87 Identities=5% Similarity=-0.086 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 006624 489 KCGRLSDAVDLFNEMKKL---RCKPD----VYTYNALMSGMVRAGMIDDAYSLLRRMEED-----GC-VPD-INSHNIIL 554 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l~ 554 (638)
..|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++- |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356777777777766432 12232 356888888888899999998888887742 21 233 45788889
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 006624 555 NGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999888764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.67 E-value=0.02 Score=56.82 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCCC-HHH
Q 006624 519 MSGMVRAGMIDDAYSLLRRMEED---GCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQH-----SE-IKPD-AVS 584 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~ 584 (638)
+..+...|++++|+.++++.++. -+.|+ ..+++.++..|...|++++|..++++... .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888888888877753 12232 45677888888888888888888887764 12 2233 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 585 YNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999888887653
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.65 E-value=0.012 Score=44.34 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=40.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
....+.+.|++++|+..|+++.+..+. +.. .+..+..+|...|++++|++.|++..+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344566667777777777777665332 455 677777777777777777777777776654
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.55 E-value=0.25 Score=45.04 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-CCH
Q 006624 528 IDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKS-----GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA-GMF 598 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~ 598 (638)
..+|..++++.++. .|+ ...|..++..|.+. |+.++|.++|++.++.+..-+..++..+.+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777788888874 566 55788888888884 89999999999988743211366677777878774 889
Q ss_pred HHHHHHHHHHHhCCCC--CCHhhHHHH
Q 006624 599 EEAARLMKDMNAKGFE--YDQITYSSI 623 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~--p~~~~~~~l 623 (638)
++|.+.+++.+..+.. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999998876655 665554443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.54 E-value=0.0072 Score=60.08 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=64.2
Q ss_pred HHhCCCHHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCCH-HHHHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRK---CKP----TANTYNSMILMLMQEGYYEKIHELYNEMCN-----EGNCFPDT-VTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~ 236 (638)
+.++|++++|+.++++..+.. ..| ...+++.+..+|...|++++|+.++++++. .|+..|++ .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 346678888888888776431 111 245678888888888888888888887653 24444554 46788
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
|...|...|++++|+.++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888888888887764
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.54 E-value=0.0074 Score=45.63 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....+.+.|++++|++.|+++.+..+ .+.. .+..+...+...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44556677777777777777777654 4555 6777777777777777777777777765
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.48 E-value=0.22 Score=39.01 Aligned_cols=67 Identities=22% Similarity=0.154 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
+....+..++.+...|+-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++++.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455566667777777777777777543 3456677777777777777777777777777777764
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.24 E-value=0.07 Score=58.40 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
...|..+...+.+.++++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344455555555555555555554444
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.22 E-value=0.13 Score=56.16 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=94.7
Q ss_pred HHHHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 133 RCLDETRMIGVMWK-SIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 133 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
......+++++|.+ ++.. -++......++..+.+.|..++|.++.+ +.. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 34456788888766 4421 1112334777788888888888887642 111 113345667888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 8888875433 5677888888888888998888888887643 33455555556666665555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
....|- ++.....|.+.|++++|++++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444431 22233345555666666555544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.046 Score=41.76 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRK------CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...+..+...+.+.|+++.|...|++..+.. ..+....+..+..++.+.|++++|+..++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 33444455555555555555555555544320 11234455555555555666666666655555544
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.031 Score=45.49 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
..+.+.|.+....+ +++..+...+..++.+.+ ++++++.+|+++.+.+ +..+...+..+..++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555544 467777777777777777 5567888888777653 111355666677777888888888888
Q ss_pred HHHHHhCCC
Q 006624 218 YNEMCNEGN 226 (638)
Q Consensus 218 ~~~~~~~~~ 226 (638)
++.+++..|
T Consensus 94 ~~~lL~ieP 102 (152)
T 1pc2_A 94 VRGLLQTEP 102 (152)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCC
Confidence 888887664
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.068 Score=43.51 Aligned_cols=90 Identities=20% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKP--DIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
...+.+-|.+..+.|. ++..+...+.-++++.+ ++++++.+|++..+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455555665555554 46666666777777766 5667777777777764 12 3445555666777888888888
Q ss_pred HHHHHHHHCCCCCCHhHHH
Q 006624 357 KLFNKMEALQCKPNVVTYN 375 (638)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~ 375 (638)
+.++.+.+. .|+..-..
T Consensus 92 ~y~~~lL~i--eP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAK 108 (152)
T ss_dssp HHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHhc--CCCCHHHH
Confidence 888887763 35544333
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.09 E-value=0.069 Score=39.68 Aligned_cols=64 Identities=9% Similarity=-0.096 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 546 DINSHNIILNGLAKSGG---PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|...+..+..++...++ .++|..++++..+... -++.....+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 3455555555544221 1334444444555555555555555555553
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.58 Score=39.13 Aligned_cols=98 Identities=7% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006624 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
..+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655544 2445566666666666666655555555433 23333344444544444
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 006624 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
..+-+.....| -++.-...+...|+++++.++|
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 43333333222 1233333444455555555554
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.47 Score=39.67 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=51.5
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
..+.|+++.|.++.+++ .+...|..|.+...+.|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 34556666666665544 1455666666666666666666666665422 3333334444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
-.++-+....+| + ++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444433 1 12233344455666666666543
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.57 E-value=0.15 Score=38.83 Aligned_cols=68 Identities=15% Similarity=0.015 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN-----CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+...+..++..+.+.|+++.|...|+.+.+... ..+....+..+..++.+.|+++.|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3667778888888999999999999888776421 1134566777777777777777777777777764
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.83 E-value=0.46 Score=38.17 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCCHH-HHHHHHH------HHHccCChHHHHHHHHHHHHC
Q 006624 194 TANTYNSMILMLMQEGYY------EKIHELYNEMCNEGNCFPDTV-TYSALIS------AFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~m~~~ 260 (638)
|.++|-..+..+-+.|+. ++.+++|++....-+ |+.. .|...+. .+...++.++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666676666666666776 777777777776543 4321 1111111 112236777788888777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
+-.. ...|......-.+.|++.+|.+++...+..++.|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3222 6666666676777788888888887777776653
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.71 E-value=0.42 Score=38.38 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHhCCCHHHHHHHHHHHhh
Q 006624 122 EHNSTTYMALIRCLDETRMI------GVMWKSIQDMVRSTCVMGPS-VLSEIVNI------LGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 188 (638)
+.|..+|-..+..+-+.|++ ++..++|++.... .+|+.. .+...+.. +...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 7888888887764 344321 11111111 1223566666666666644
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
. ++-=...|.....--.++|++.+|.+++...+..++
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3 121255555555555566666666666666665543
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.68 E-value=6e-06 Score=79.62 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.+.+|..+.++..+.++..+|++.|- ..-|+..|..++....+.|++++-...+.-..+..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 34567777777777777766665443 234556677777777777777777766655544422 3333446777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--------------------CC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--------------------LQ 263 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--------------------~~ 263 (638)
+|++.++..+-.+. +. .||......+.+-|...|.++.|.-+|..+.... -.
T Consensus 125 ayAk~~rL~elEef----l~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHTSCSSSTTTST----TS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHhhCcHHHHHHH----Hc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777765543222 11 1566566666666666666666665554332110 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
-++.||..+-.+|...+.+.-|.-.--.++-.. .-...++..|-..|.+++-+.+++.-... -......|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 245566666666666666555544433333211 11223445566666666666666665532 223555666666
Q ss_pred HHHHcc
Q 006624 344 NVLGRA 349 (638)
Q Consensus 344 ~~~~~~ 349 (638)
-.|++-
T Consensus 271 ILYsKY 276 (624)
T 3lvg_A 271 ILYSKF 276 (624)
T ss_dssp HHHHSS
T ss_pred HHHHhc
Confidence 666654
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.59 E-value=0.3 Score=38.18 Aligned_cols=84 Identities=10% Similarity=0.010 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNK---ALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
..+.+.|.+....| .++..+-..+..++.+..+... ++.+++.+.+.+ +.........+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444444433 3666666666666666665544 677777766653 111334445566677777777777777
Q ss_pred HHHHHhCCC
Q 006624 218 YNEMCNEGN 226 (638)
Q Consensus 218 ~~~~~~~~~ 226 (638)
++.+++..|
T Consensus 97 ~~~lL~~eP 105 (126)
T 1nzn_A 97 VRGLLQTEP 105 (126)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 777777654
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.54 E-value=0.46 Score=37.10 Aligned_cols=83 Identities=23% Similarity=0.124 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED---AYGLFMNMLKEGCK-PDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
....+.+-|......|. ++..+-..+.-++.+.....+ ++.+++++.+.+.+ -.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555544444 466666666666776665554 77777777665311 12334445666777888888888
Q ss_pred HHHHHHHH
Q 006624 357 KLFNKMEA 364 (638)
Q Consensus 357 ~~~~~~~~ 364 (638)
+.++.+.+
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887776
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.43 E-value=2.3 Score=33.44 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
......++.+...|+-++-.+++..+.. +..|++.....+..+|.+.|+..+|.+++.+..+.|.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444444455555555555544322 2233444444555555555555555555555554443
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.33 E-value=11 Score=40.91 Aligned_cols=277 Identities=13% Similarity=0.039 Sum_probs=148.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHH-HHhCC-CC-----CCHHHHHHHHH
Q 006624 345 VLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIKSLFESKAPASEASAWFEK-MKANG-VL-----PSPFTYSILID 415 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-~~-----~~~~~~~~l~~ 415 (638)
+....|+.++++.+++.....+...+. ..-..+--++...|...++ ..++.. +.... +. +....-.++.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~-~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDT-TDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHH-HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 455667777787777765442101122 2222233344555555444 444443 33221 00 11222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006624 416 GFCKTNR-VEKAHLLLEEMEEKGFPPCP--AAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 416 ~~~~~~~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
++.-.|. -+++.+.+..+.... .+.. .+-.++...+.-.|+-+....++..+.+. ...+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCC
Confidence 3433342 245666676666543 1111 12223444566778888888888877763 22222223334444557889
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 493 LSDAVDLFNEMKKLRCKPDVYTYN---ALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEI 569 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 569 (638)
.+.+..+.+.+.... .| ..-|. ++.-+|+-.|+.....++++.+.+.. ..+......+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 998888888887641 12 22333 33445667888777777999888752 22333333444455567887777888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 006624 570 FTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 570 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
++.+.+.+ .|....-..+.-+....|+. .+|...+..+.. .+|..+-..-+-+++..|
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 87776643 34444333444445555554 678888888863 455555555555554444
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.11 E-value=1.3 Score=32.62 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
|.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 44467777777777788899999999999999999999999999988765 344455688777654
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.69 E-value=6.5 Score=36.74 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=90.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV----QEMKGKGCALTVYTYTELIK 309 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~li~ 309 (638)
|.++..-|.+.+++++|++++-.-.. .+.+.|+...|-++. +-..+.+.++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455556677777777776543322 244455554444333 33444566666666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 006624 310 GLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLF 382 (638)
Q Consensus 310 ~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 382 (638)
.+.....-+ +=..+.+++++ .| ..-|......+...|.+.+++.+|...|- .|..+....+..++-.+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 655444311 11223333332 12 33467777888899999999999887773 133333456655554444
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 383 ESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 383 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 434 (638)
..+...+. +.+.-. .+-.|...++...|..+++...
T Consensus 179 ~~~~~~e~---------------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHTA---------------PLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGGH---------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCccH---------------HHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 44432222 222222 2334666778888877766554
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.13 E-value=10 Score=37.60 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhHHHHHHHHHHhcCChHHH
Q 006624 350 GRLEDALKLFNKMEAL-----QCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a 390 (638)
|+++.|.+.+-.+.+. +..........++..+...++....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l 75 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDL 75 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHH
Confidence 4566666655544331 1222344455555555555554443
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.47 E-value=5.1 Score=45.40 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006624 232 VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
.-|..++..+-+.|.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34555556666666666666655555443211111 1355556666666666666666655554432 33445555
Q ss_pred HHHHHhcCCH------------HHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 006624 308 IKGLGRAGRV------------EDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDA-LKLFNKMEA 364 (638)
Q Consensus 308 i~~~~~~g~~------------~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 364 (638)
+..+|..|.. ++..+++..-.+. .+...+.-|..|=..+...|++..| .-+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555544443 3344444332221 1111123345555555666666544 445555543
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.36 E-value=12 Score=37.00 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----ccCCHHHHH--HHHHHHHH---cCCC
Q 006624 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG----KAKRYEAAN--ELFLELKE---YCGC 474 (638)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~--~~~~~~~~---~~~~ 474 (638)
.........++..|...|+++...+.+.-+.... .-...+...+++.+. .....+... .+.+.... ..+.
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 3345556667777777777777766665554432 112223333333222 112111111 11111000 0011
Q ss_pred C---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CC
Q 006624 475 S---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEE----DG 542 (638)
Q Consensus 475 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 542 (638)
. .......|...|...|++.+|..++..+... +.... ...+...+..|...+++.+|..++.++.. ..
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 1223345566666666666666666665432 11111 22344455566666666666666665532 11
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 543 CVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 543 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1222 22344555555666666666666655544
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.12 E-value=0.9 Score=37.28 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
++..+.+++...|+|.+|...|++.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445566666666666666666653
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.06 E-value=2.4 Score=33.05 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
|.=+..+-++.+....+.|++.+..+.+++|.+.+|+.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 33466777777777888999999999999999999999999999998865 355566788887754
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.06 E-value=8.2 Score=43.70 Aligned_cols=168 Identities=15% Similarity=0.082 Sum_probs=102.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++..+.+.+.++-|.++..... .++..--.+..++...|++++|.+.|++.... .. .+... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~-~~~~l----------~~ 880 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LY-SHTSQ----------FA 880 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CT-TCCCS----------CS
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hc-ccchh----------hh
Confidence 4445555666666555443322 24444455667777788888888888765321 10 11000 00
Q ss_pred ChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 006624 246 RDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV----YTYTELIKGLGRAGRVED 319 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 319 (638)
... -+..+.... ...-..-|..++..+.+.+.++.+.++-+...+....-+. ..|..+.+.+...|++++
T Consensus 881 ~~~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLR----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHH----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhc----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000 011122211 1123445778888999999999999888777654322222 257888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006624 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
|...+-.+..... -......|+...|..|..+.-.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhh
Confidence 9999988776543 3567778888888887765543
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.57 E-value=1.9 Score=41.99 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006624 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
...++..+...|++++|+..+..+....+ -+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566777888888888888888887765 5777888888888888888888888887653 477777654
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.04 E-value=3.3 Score=32.50 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 157 VMGPSVLSEIVNILGKAKMV---NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|++.+-..+.-++.+..+. .+++.+++.+.+.+.......+-.+.-++.+.|++++|.+..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45555555555555555432 3456666666554332234445556666666777777777666666654
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.97 E-value=24 Score=38.21 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 188 (638)
-|..+++++.+.++.+.+.++|.++..
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355666777778888888888888764
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.81 E-value=5.4 Score=42.20 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
..|...|+++-|+++-++.+..- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34556788888888888877742 224778888888888888888888777776
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.74 E-value=1.7 Score=45.93 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=57.0
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHhhhC---
Q 006624 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG---------GPKRAMEIFTKMQHS--- 576 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~~~--- 576 (638)
+.+..=|..|.....+.+.+++|.+.|+..+.. +-+...+..|+..|.+.+ +.+..+...-++..-
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R 687 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR 687 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence 344556888888888888888888888888875 457788888888888776 666666666665531
Q ss_pred -CCCCCHHHHHHHHHHHHhcC
Q 006624 577 -EIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 577 -~~~p~~~~~~~l~~~~~~~g 596 (638)
-...+......+...+.+.|
T Consensus 688 wY~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 688 YYNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TTBCCCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHHHhC
Confidence 11223444445555454444
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.09 E-value=7.4 Score=30.98 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+++.+-..+..++.+..+ ..+++.+++.+...+..........+.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3455555555555555443 23455555555554332233444455566666666666666666666654
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.40 E-value=16 Score=33.90 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=87.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL----VQEMKGKGCALTVYTYTELIK 309 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~li~ 309 (638)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++...+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44445556666777777776644322 23445555444443 344445566666666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 006624 310 GLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLF 382 (638)
Q Consensus 310 ~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 382 (638)
.+.....-+ +=.++.+++++ .| ..-|+.....+...|.+.|++.+|...|-. +..-+...+..++-.+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 554432111 12334444433 11 224777888888899999999988877642 11113444544444443
Q ss_pred hc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 383 ES---KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 383 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 434 (638)
.. +...+. +.+.-. .+-.|.-.++...|..+++...
T Consensus 177 ~~~~~~~~~e~---------------dlf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTV---------------AEFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHH---------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchH---------------HHHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 33 222221 111112 2233556778888888777654
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.37 E-value=19 Score=34.76 Aligned_cols=118 Identities=9% Similarity=0.031 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHH
Q 006624 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-----PSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 179 (638)
.+..+..++|+...+..-.....=.-++..|...|++.+|.+++..+.+.-...| ..++..-+..|...+++.++
T Consensus 79 ~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 79 VQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHH
Confidence 3566788899976542111111223678899999999999999988877521211 34566677788888999998
Q ss_pred HHHHHHHhhC--CCCCCHHHH----HHHHHHHH-hcCCHhHHHHHHHHHH
Q 006624 180 LSIFYQIKSR--KCKPTANTY----NSMILMLM-QEGYYEKIHELYNEMC 222 (638)
Q Consensus 180 ~~~~~~~~~~--~~~~~~~~~----~~l~~~~~-~~g~~~~A~~~~~~~~ 222 (638)
...+...... .+.+++... -.-+..++ ..++|..|...|-+..
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 8888776543 111233222 22234455 6788888888777664
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.20 E-value=2.4 Score=31.24 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 140 MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+.-+..+-++.+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34466777777778888899999999999999999999999998888765 2223445665553
No 254
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.10 E-value=4.6e-05 Score=73.66 Aligned_cols=263 Identities=13% Similarity=0.099 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.|..+..+..+.++..+|++-|-+. .|...|..++.+..+.|.+++-.+++....+. ..++.+=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 3444555555555544444433221 33334455555555555555555554433332 12333334555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
++.+++.+-.+++. .|+..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 55555443222221 1333333444444555555555544443221 1222333344444444443
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 357 KLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 436 (638)
+.-++. -++.||..+-.+|...+...-+-.--+.-+... | ....++..|-..|.+++-+.+++.-...
T Consensus 191 daArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha----d--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 191 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----D--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH----H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 322221 244455555555554444332211111111111 1 1122445566677777777777766643
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCC------CcHHHHHHHHHHHHhcCCHHHHHH
Q 006624 437 GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY-CGC------SSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
. ......++-|.-.|++-. .++..+.++..-.+ +++ .....|..++-.|++-.+++.|..
T Consensus 259 E-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 3 455666777766666652 23322222221111 111 123446677777777777766543
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.98 E-value=3.6 Score=40.01 Aligned_cols=55 Identities=4% Similarity=-0.029 Sum_probs=26.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
++..+...|++++|...+..+.... +.+...|..++.+|.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555554444332 124445555555555555555555555543
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.54 E-value=7.4 Score=30.53 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 545 PDINSHNIILNGLAKSGGP---KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
|+..+--.+.+++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444455544432 3445555554443210112333344445555555555555555555
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.40 E-value=8.3 Score=28.27 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|+|++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45566666555555432 22222223345667777777777666543 57777776653 356677777777666
Q ss_pred HHHhCC
Q 006624 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.63 E-value=28 Score=32.25 Aligned_cols=82 Identities=11% Similarity=-0.102 Sum_probs=48.2
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006624 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC---GRLSDAVDLFNEMKKLRCKPDVYTYN 516 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~ 516 (638)
-++.....+...|.+.|++.+|...|-.- ...+...+..++.-+... |...++--+ .-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHH
Confidence 47788888899999999999988776521 111344444444433333 333332211 112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 517 ALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
++ -.|...|+...|..+++...+
T Consensus 194 aV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred HH-HHHHHhcCHHHHHHHHHHHHH
Confidence 22 235567888888888887653
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.47 E-value=4.8 Score=31.47 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-++.+...+..|++.+..+.++++-+-+++..|.++|+-++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 56667777777888899999999999999999999999999888765 2334445666553
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.16 E-value=8.3 Score=31.63 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMG-------PSVLSEIVNILGKAKMVNKALSIFYQIKSR--KCKPTA 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 195 (638)
.++-.-++.+...|.|+.|+-+..-++... ..++ ..++..+.+++...|++.+|...|++..+. ...-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788889999999988887755431 1222 136677888999999999999999986432 111011
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
.++.++. . ...... .... ..+...--.+...+.+.|+.++|+.+++.+..+. .+..+-..|..
T Consensus 101 s~~~~~~---~-~ss~p~---------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~Lak 163 (167)
T 3ffl_A 101 KVRPSTG---N-SASTPQ---------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLAN 163 (167)
T ss_dssp -----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHH
T ss_pred Ccccccc---c-cCCCcc---------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHH
Confidence 1111110 0 000000 0011 1344555557777788888888888887765442 24444334433
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.41 E-value=8 Score=28.30 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|+|++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45666666655555432 22222223345667777777777665543 57777776653 457777777777776
Q ss_pred HHHhCC
Q 006624 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 776554
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.05 E-value=33 Score=30.75 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=69.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCC
Q 006624 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~ 386 (638)
..+.+.|++++|+.....-++..+. |...-..++..+|-.|+++.|.+-++...+... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 3456778888888888777777544 777777788888888888888887777766431 1222344444443
Q ss_pred hHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 006624 387 PASEASAWFEKMKANGVLP-----SPFTYSILIDGF--CKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~ 436 (638)
+..-..+...+-.| ...-...++.+. ...|+.++|..+-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222233322222 122233444443 3468888888888877654
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.81 E-value=21 Score=28.37 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH
Q 006624 298 ALTVYTYTELIKGLGRAGR---VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
.|+..+--.+.-++.++.. ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+. .|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 4566665556666666554 3457777777776544334445555666778888888888888887773 3554433
Q ss_pred H
Q 006624 375 N 375 (638)
Q Consensus 375 ~ 375 (638)
.
T Consensus 114 ~ 114 (144)
T 1y8m_A 114 G 114 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.90 E-value=12 Score=33.58 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=43.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 416 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
...+.|+++.|+.....-++.. |.|...-..+++.+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4567788888888888777775 778888888888888888888888888877764
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.42 E-value=18 Score=35.52 Aligned_cols=61 Identities=5% Similarity=-0.075 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006624 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP--DVYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (638)
+...+...|.+.|++++|.+.|.++......+ -...+-.++..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556666667777777777776665532222 23445555666666666666666666654
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.24 E-value=44 Score=31.17 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=48.7
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 006624 439 PPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNAL 518 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 518 (638)
.-|+.....+...|.+.+++.+|...|- .|..++...+..++.-+...+...+ +|.+.-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3567778888889999999988887763 1233344555444444333332111 122222333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 006624 519 MSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
+ -|...++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 3 35667888888887766654
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.99 E-value=23 Score=30.07 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
..++.++|..|...+....-..-|..+...+...|++.+|.++|+.-++++-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 456666666666555544555556666666666666666666666666655444
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.90 E-value=51 Score=31.71 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCcHHHHH---
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPC-----PAAYCSLINGYGKAKRYEAANELFLELKEYC--GCSSARVYA--- 481 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--- 481 (638)
.++..|...|++.+|..++.++.+.--..| ...+..-+..|...+++.++...+....... +.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467888889999999888888765311111 2345666777888889888888888775421 223333222
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHh----CCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHH
Q 006624 482 -VMIKHFG-KCGRLSDAVDLFNEMKK----LRCKP---DVYTYNALMSGMVRAGMIDDAYSLLR-RMEEDGCVPDINSHN 551 (638)
Q Consensus 482 -~li~~~~-~~g~~~~A~~~~~~m~~----~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~ 551 (638)
.-...+. ..+++..|...|-+..+ .+ .| +...|..+. +. -.++..+-..++. +....-..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHH-HH-HcCCHHHHHHHhccccccccCCccHHHHH
Confidence 2223345 67888888877766532 11 11 122232222 22 2233222222221 211111235555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 006624 552 IILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.++.+| ..+++.+...+++...
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHH-HhCCHHHHHHHHHHHH
Confidence 566554 5567766666666543
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.16 E-value=13 Score=36.48 Aligned_cols=61 Identities=5% Similarity=-0.074 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSR--KCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+...+...|.+.|++++|.+.|.++... +...-...+-..++.+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5566777777777777777777777543 333345666777777777777777777777764
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.70 E-value=36 Score=28.95 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHc--cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 229 PDTVTYSALISAFGK--LGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
.|..-...++...-. .++..++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 75 ND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 75 NDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444444433332 4446677777777777665433 4456666667777777777777777777666555
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.33 E-value=53 Score=27.99 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...-...+..+++.+.. .+...+..++. .+++.+-...+.++++.|..+ +...+.++.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 334444444555555542 22333333333 235555555555555555432 2233333322 234444445555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
++.+.|..+ +...+..+... ++...-...+.++.+.|+. ++...+..+.+ .++..+-...+.++.+.+.
T Consensus 104 aL~~~~~~~-~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALKD----EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHhCcHH-HHHHHHHHHhC----CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 555555432 33333333321 4444444445555554443 23333333332 2344444444444444443
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.84 E-value=47 Score=26.81 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
+.++|..|...+....-..-|......+...|++.+|.++|+.-++++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555554444443444445555555555555555555555555444333
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.16 E-value=61 Score=27.55 Aligned_cols=155 Identities=14% Similarity=0.059 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.++..+-...+..+.+.|.. .+...+.++... ++...-...+.++.+.+.. ++...+..+... ++...-..
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~----~~~~vr~~ 100 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALKD----EDGWVRQS 100 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC----CCHHHHHH
Confidence 34566666666666666653 333333333332 3555555566666666653 333444444331 56666666
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
.+.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.|.. ++...+..+... ++...-...+.++.+.+.
T Consensus 101 a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 101 AAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc
Confidence 666666666543 3344444443 24555555556666555543 233333333322 344444455555555554
Q ss_pred HHHHHHHHHHHHH
Q 006624 317 VEDAYGLFMNMLK 329 (638)
Q Consensus 317 ~~~A~~~~~~~~~ 329 (638)
.++...+..+.+
T Consensus 173 -~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 -ERVRAAMEKLAE 184 (211)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHh
Confidence 334444444443
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.76 E-value=65 Score=26.36 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
+.++|..|...+....-...|......+-..|++.+|.++|..-++++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 445555555555444444555555555555555555555555555554444
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.04 E-value=47 Score=24.45 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 006624 107 VKIQFFKWA 115 (638)
Q Consensus 107 ~a~~~f~~~ 115 (638)
+|.-+-+|.
T Consensus 25 EA~tIAdwL 33 (116)
T 2p58_C 25 EANCIAEWL 33 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 276
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=58.54 E-value=91 Score=30.50 Aligned_cols=94 Identities=9% Similarity=0.123 Sum_probs=61.0
Q ss_pred ChHHHHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006624 91 DHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNIL 170 (638)
Q Consensus 91 ~~~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (638)
...++.+|.....+++.|+++-. +.|++=....|..-.+.|...|+|++|.++.-...+ |.-.++.+.+.+-.+=
T Consensus 331 e~~ivpyi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp 405 (494)
T 1bpo_A 331 EENIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVP 405 (494)
T ss_dssp TTTHHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSC
T ss_pred cccchhhhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCC
Confidence 34677888877888888877655 566666677788888899999999999887765543 3455555554443333
Q ss_pred HhCCCHHHHHHHHHHHhhC
Q 006624 171 GKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~ 189 (638)
...|+..--+..|..+.+.
T Consensus 406 ~~pgq~splL~YF~~Ll~~ 424 (494)
T 1bpo_A 406 AQPGQTSPLLQYFGILLDQ 424 (494)
T ss_dssp CCTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 3334444444445444444
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.96 E-value=79 Score=25.48 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 249 SAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
++.++|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36677777776655433 3445566666666777777777777666665554
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.88 E-value=1.7e+02 Score=27.59 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 006624 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGM--FEEAARLMKDMNAKGFEY 615 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p 615 (638)
.+.++.-|...|+.++|.+.++++..-.+.+ ......+..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3556666667777777777777664211111 2223344444444332 334555666665554433
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.69 E-value=1.1e+02 Score=25.11 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 249 SAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
++.++|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 35666777776665433 3345556666666677777777776666665555
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.00 E-value=35 Score=29.60 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006624 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
.+.++|..|...+....-...|..+...+...|++.+|.++|+.-++++-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544443444555555555555555555555555555544333
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.28 E-value=34 Score=30.70 Aligned_cols=17 Identities=0% Similarity=-0.013 Sum_probs=8.4
Q ss_pred HHHHHhcCChHHHHHHH
Q 006624 132 IRCLDETRMIGVMWKSI 148 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~ 148 (638)
+...++.|+.+.+..++
T Consensus 9 L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 34445566665444443
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.62 E-value=1.4e+02 Score=26.08 Aligned_cols=24 Identities=8% Similarity=-0.083 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVR 153 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~ 153 (638)
--+..+...++|++|..++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456777888888888888876543
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.16 E-value=44 Score=29.93 Aligned_cols=50 Identities=6% Similarity=-0.011 Sum_probs=27.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 006624 522 MVRAGMIDDAYSLLRRMEEDGCVPDINS--HNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
.+..|+.....++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3455665555667777777776554321 1123344456677665554444
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.78 E-value=1.5e+02 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 44445555566666666666666665543
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.19 E-value=1.5e+02 Score=25.05 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=19.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
-.+.+.|+-.+-+|++.| .|.-..-..++.+.-.-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 356666666666666666 444444444444444333
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.31 E-value=1.2e+02 Score=26.29 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 248 ISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
+++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 467778888877766443 4456667777777778888877777777766555
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=38.38 E-value=1.7e+02 Score=24.31 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...-...+.++.+.|.. ++...+..+... ++...-...+.++.+.|+.+ +...+..+.. .++..+-...+
T Consensus 58 ~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDE-RAVEPLIKALKD----EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 444444444444444443 223333333321 45555555555555555432 2333333332 23444444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.++.+.++. ++...+..+... ++...-...+.++.+.|. .++...+..+.
T Consensus 129 ~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 129 FALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 555444442 223333333321 244444444444444443 23334444443
No 288
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.33 E-value=1.8e+02 Score=24.59 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=10.4
Q ss_pred CChHHHHHHHHHHHHCCCCCC
Q 006624 245 GRDISAIRLFDEMKENGLQPT 265 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~ 265 (638)
.+.+.|+-.+-+|++.|-.|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 445555555555555544333
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=36.24 E-value=3.8e+02 Score=27.61 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..-...+..+.+.+++...+.++.. .+.+...-.....+....|+..+|......+-..+.. .......++..
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~ 145 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSV 145 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHH
Confidence 3345555666667776666654432 1224444445666677777777777777777666553 23334445555
Q ss_pred HHccCC
Q 006624 241 FGKLGR 246 (638)
Q Consensus 241 ~~~~g~ 246 (638)
+.+.|.
T Consensus 146 ~~~~g~ 151 (618)
T 1qsa_A 146 WRASGK 151 (618)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 554443
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=34.34 E-value=1.7e+02 Score=24.30 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH-HccCCHHHHHHHHHHHHHCCCCCCH
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV---LINNLINVL-GRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++ ....+.....++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 3344445555554455555555655544322 111121111 1122333445555666666655443
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.66 E-value=2.2e+02 Score=24.11 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=4.8
Q ss_pred HHHHHHHHhCC
Q 006624 392 SAWFEKMKANG 402 (638)
Q Consensus 392 ~~~~~~~~~~~ 402 (638)
.-++.+|.+.|
T Consensus 34 ly~LaRml~~G 44 (204)
T 2r9g_A 34 LHYLARLVEAG 44 (204)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 44444444444
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.17 E-value=63 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=8.5
Q ss_pred HccCChHHHHHHHHHHHHCC
Q 006624 242 GKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g 261 (638)
++.|+.+-...+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 33444444444444443333
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.04 E-value=84 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=13.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...++.|+.+-+..+++.+.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455666666666666554433
No 294
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.86 E-value=4.4e+02 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDM 151 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (638)
..| .+|--|.|.|.+++|.++.++.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHh
Confidence 366 5555667788888887777654
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.11 E-value=1.8e+02 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
+.+.|..+ ...-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 18 l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44455542 233334445555555556667777777666555566665555555555543
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.23 E-value=3.9e+02 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHhccC
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI----TYSSILEAVGKVD 631 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 631 (638)
-|..++..+-+.|-++-+.++.+.....--.-|.. .|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 57889999999999999999999888642222332 5666666665544
No 297
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.94 E-value=2.5e+02 Score=23.96 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+.+.|+-.+-+|++.|-.|.-..-..++.+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555444433333333333
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.33 E-value=3.5e+02 Score=25.46 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC
Q 006624 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGM--IDDAYSLLRRMEEDGCVP 545 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p 545 (638)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+....++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 455666677777777777777777531111 12334444444443332 244566666666655443
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.10 E-value=2.9e+02 Score=25.81 Aligned_cols=233 Identities=10% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (638)
...++.-|...|+.++|...++++.... .........+..++-+.....+.+..++..+.+.|+-+.......+-..+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~-~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS-LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG-GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Q ss_pred hcC----CHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006624 419 KTN----RVEKAHLLLEEMEEK----GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 419 ~~~----~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
... +.+.|...+.++... |+.|-...+..+...+...| ........++..+.+.
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g------------------~~~~fl~~vl~~l~~~ 154 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG------------------KAASLLLEILGLLCKS 154 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT------------------CHHHHHHHHHHHHHHH
T ss_pred hChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc------------------hHHHHHHHHHHHHHHH
Q ss_pred CCHHHHHHHHHH--HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 491 GRLSDAVDLFNE--MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 491 g~~~~A~~~~~~--m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
...+.+..+|.+ +.-..+-|.... +..+.+....+.-......-......+-...-..|...+...-..++...
T Consensus 155 ~g~~~l~~~~~~s~l~l~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~ 230 (339)
T 1ug3_A 155 MGPKKVGTLWREAGLSWKEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFD 230 (339)
T ss_dssp HCHHHHHHHHHHTTCCGGGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHH
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006624 569 IFTKMQHSEIKPDAVSYNTILGCLSR 594 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~ 594 (638)
..+........++...-.++..+.++
T Consensus 231 ~i~~~~~~~~~~~~~~~~~l~~a~~~ 256 (339)
T 1ug3_A 231 WIEANLSEQQIVSNTLVRALMTAVCY 256 (339)
T ss_dssp HHHHHSCHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCChhhCChHHHHHHHHHHHHH
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=28.78 E-value=3.5e+02 Score=24.96 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhccC
Q 006624 562 GPKRAMEIFTKMQHSEIKPDA--VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQ-ITYSSILEAVGKVD 631 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g 631 (638)
+..+..++--.+..-++.|.. -+...-+....+.+++..|..+.+++++.+-.|+. ..-..++..|.+.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMA 257 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 445666666666665565543 24455666777888888888888888865532322 24455666665543
No 301
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.36 E-value=2.5e+02 Score=23.20 Aligned_cols=168 Identities=12% Similarity=0.040 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...-...+..+++.+... +...+.+++. .+++.+-...+.++++.|..+ +...+..+.. .++...-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 3444444445555555432 2333333333 345666666666777666543 3333334433 246666666777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
++.+.|..+ +...+..+... ++...-...+.++.+.|+. ++...+..+.. .++..+-...+.++.+.|..
T Consensus 99 aL~~~~~~~-~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 99 ALGQIGDER-AVEPLIKALKD----EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHhCcHH-HHHHHHHHHcC----CCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 777777643 44444444431 6666666777777777664 34555555544 25666667777777777663
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLG 312 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 312 (638)
++...+..+.+. ++...-...+.++.
T Consensus 169 ~~~~~L~~~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 169 RVRAAMEKLAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 455555555543 24444444444443
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.94 E-value=2.9e+02 Score=25.32 Aligned_cols=215 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
....++.-|...|+.++|...++++......+.......-...=.+...-+.+-.++..+. .+.-+.......+...+.
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~ 83 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLK 83 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q ss_pred hcCC--------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCC
Q 006624 489 KCGR--------LSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRME---------------EDGCVP 545 (638)
Q Consensus 489 ~~g~--------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~p 545 (638)
...+ ++..-.++.++...++-|-.......-..-...|. +++..-+.++ ..+..|
T Consensus 84 ~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~--~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~ 161 (307)
T 2zu6_B 84 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR--AALDKATVLLSMSKGGKRKDSVWGSGGGQQS 161 (307)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHH--HHHHHHHHHHHTCC----CCCSSCCCSTTSC
T ss_pred hhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHH--HHHHHHHHHhcccccHhHHhhhcCCCCCCCC
Q ss_pred C---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHhhH
Q 006624 546 D---INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMF--EEAARLMKDMNAKGFEYDQITY 620 (638)
Q Consensus 546 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~ 620 (638)
. ......++.-|...|+.++|.+.++++..-.+. .......+..++-+.++. +....++..+.+.|+-+.....
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_pred HHHHHHH
Q 006624 621 SSILEAV 627 (638)
Q Consensus 621 ~~l~~~~ 627 (638)
.-+-+.+
T Consensus 241 ~Gf~~vl 247 (307)
T 2zu6_B 241 RGYERIY 247 (307)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.10 E-value=2.4e+02 Score=22.58 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006624 271 TLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m 292 (638)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.82 E-value=1.6e+02 Score=20.30 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 006624 598 FEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 598 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
.-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344455555544443344444444444444444
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.77 E-value=2.5e+02 Score=23.74 Aligned_cols=19 Identities=11% Similarity=0.136 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 006624 350 GRLEDALKLFNKMEALQCK 368 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~ 368 (638)
.|.+.|+-++.+|.+.|..
T Consensus 21 SDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4455555555555554433
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.75 E-value=1.3e+02 Score=24.47 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=5.5
Q ss_pred ChHHHHHHHHHHHH
Q 006624 246 RDISAIRLFDEMKE 259 (638)
Q Consensus 246 ~~~~A~~~~~~m~~ 259 (638)
+.-.|.++++.+.+
T Consensus 47 ~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 47 THYTPESLYMEIKQ 60 (162)
T ss_dssp SCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 33334444444433
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.72 E-value=1.8e+02 Score=23.07 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34445443322 22233333344444455566666655554445555444444444444
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.44 E-value=1.2e+02 Score=24.74 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCC
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSR--KCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 210 (638)
..++..+...+..-.|.++++.+.+. ++..+..|-..-++.+.+.|-
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444555544555555555555544 444444444444445554443
No 309
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.28 E-value=3.1e+02 Score=23.44 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHHCC
Q 006624 350 GRLEDALKLFNKMEALQ 366 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~ 366 (638)
.+.+.|+-++.+|.+.|
T Consensus 49 SDpDAALywLaRMl~~G 65 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAG 65 (213)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 33444444444444433
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.16 E-value=5e+02 Score=25.91 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCH--HHH-HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTA--NTY-NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+|.+++.|...+.++.|..+..+..--.. .++. ..| ..+++.+.-++++.+|.+.+......-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45678888888888889999888888742110 1111 222 235677777888888888888887654
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.56 E-value=2e+02 Score=22.74 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=25.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 538 MEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGM 597 (638)
Q Consensus 538 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 597 (638)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3444555443322 2233333334444455555555544333344443333444444443
No 312
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.14 E-value=2.9e+02 Score=22.77 Aligned_cols=130 Identities=7% Similarity=-0.050 Sum_probs=57.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 006624 485 KHFGKCGRLSDAVDLFNEMKKLRCKPDVYT---YNALMSGMVR-AGMIDDAYSLLRRMEEDGCVPDINS---HNIILNGL 557 (638)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~ 557 (638)
...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+.....++.+.+++.|..++... .++.+...
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A 122 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGG
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHH
Confidence 334445555544555555666665554321 2223222221 2234445566677777776654321 10122222
Q ss_pred HhcCCH-HHHHHHHHHhhh-CCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 558 AKSGGP-KRAMEIFTKMQH-SEIKPDAVSY--NTILGCLSRAGMFEEAARLMKDMNAKGFE 614 (638)
Q Consensus 558 ~~~g~~-~~A~~~~~~m~~-~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 614 (638)
+..|.. ..-..+++.+.+ .|..++.... .+-+....+.|+.+-..-+.+.+.+.+.+
T Consensus 123 ~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp GGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 223322 334456666666 5655543211 12233344556654443333334334443
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.98 E-value=7.1e+02 Score=27.25 Aligned_cols=49 Identities=12% Similarity=-0.004 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 006624 232 VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFKLG 280 (638)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 280 (638)
.-|..++..+-+.+-++-+.++-+..++.--+-|. ..|+.+..+.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 35777888888888888888877777764222232 25666666665543
No 314
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.88 E-value=1.7e+02 Score=28.25 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHH
Q 006624 274 SIYFKLGEVEKALGLV 289 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~ 289 (638)
...++.|+.+-+..++
T Consensus 118 ~~A~~~g~~~~v~~Ll 133 (437)
T 1n11_A 118 HIAAREGHVETVLALL 133 (437)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344455554444333
No 315
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.62 E-value=2.4e+02 Score=24.23 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006624 176 VNKALSIFYQIKSRKCKPTAN-------TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
++.|+.+++.+.+.-.-++.. .--..+..|++.|.+++|.+++++.....+ .+...-+.|...-.+..-+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~--s~~kLr~kL~~II~~Kd~~H 165 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP--TTQKLRNDLLNIIREKNLAH 165 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG--GGHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCccc
Q ss_pred HHHHHH
Q 006624 249 SAIRLF 254 (638)
Q Consensus 249 ~A~~~~ 254 (638)
.-++-|
T Consensus 166 ~~lqnF 171 (235)
T 3bu8_A 166 PVIQNF 171 (235)
T ss_dssp HHHHTC
T ss_pred HHHHhc
No 316
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.52 E-value=2.8e+02 Score=25.39 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006624 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 547 (638)
.+.+.|..++..+ .+..-++.|+.+ +.+.+++.|-.||.
T Consensus 291 ~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 291 LLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 3344555555433 223334455543 44556666666654
No 317
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.00 E-value=2.5e+02 Score=21.67 Aligned_cols=99 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV--EDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
..++.-|...|+.++|.+.++++..-... .......+..++-+.++- +....++..+...|+-+.......+...+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~ 89 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 89 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHh
Q ss_pred ccCC--------HHHHHHHHHHHHHCCCCC
Q 006624 348 RAGR--------LEDALKLFNKMEALQCKP 369 (638)
Q Consensus 348 ~~g~--------~~~A~~~~~~~~~~~~~p 369 (638)
...| ++..-+++..+...|+-|
T Consensus 90 ~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 90 EIPDINLDVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred hChHhhcCccchHHHHHHHHHHHHHCCCCC
No 318
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.85 E-value=2.5e+02 Score=28.35 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006624 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
.+......+++..+-+--+...-.-++..|.+.|-.+.|.++++.+-..-. .+...+ ..+..+++.|+++..
T Consensus 497 ~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l--~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 497 RSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML--SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred hhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH--HCccHH-HHHHHHHHcCChhhc
Confidence 334444555554443333556666777777777777777777777765433 333444 555666777776654
No 319
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.26 E-value=3.9e+02 Score=23.58 Aligned_cols=145 Identities=16% Similarity=0.041 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHhCCCH----HHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhcCC-----HhHHHHHHHHHHhCCCC
Q 006624 158 MGPSVLSEIVNILGKAKMV----NKALSIFYQ-IKSRKCKPTANTYNSMILMLMQEGY-----YEKIHELYNEMCNEGNC 227 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~----~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~ 227 (638)
+++..-...+.++++.|.. .....++.. +.. .++...-...+.++.+.+. ...+...+..+...
T Consensus 66 ~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--- 139 (280)
T 1oyz_A 66 KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--- 139 (280)
T ss_dssp SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC---
Confidence 4455555555556555532 222233332 122 2355554555555554431 33444544444431
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 228 FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG-EVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 228 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
++...-...+.++...|+. .+...+..+.+ .++..+-...+.++.+.| ....+...+..+... ++...-..
T Consensus 140 -~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~ 211 (280)
T 1oyz_A 140 -KSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIE 211 (280)
T ss_dssp -SCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHH
T ss_pred -CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHH
Confidence 5666666666666666653 24444444443 245554444555554443 123344444444332 34444455
Q ss_pred HHHHHHhcCC
Q 006624 307 LIKGLGRAGR 316 (638)
Q Consensus 307 li~~~~~~g~ 316 (638)
.+.++.+.|+
T Consensus 212 A~~aL~~~~~ 221 (280)
T 1oyz_A 212 AIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 5555555554
No 320
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.12 E-value=1.9e+02 Score=22.92 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
-.|.++++.+.+.++..+..|-..-++.+.+.|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444444444444444444444444
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.87 E-value=1.8e+02 Score=22.63 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 308 IKGLGRAG-RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 308 i~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
+..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33343333 44455566666655555445555444444444443
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.83 E-value=3e+02 Score=22.07 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~ 221 (638)
++.-|...|+.++|...++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444444444444444444
No 323
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.82 E-value=1e+02 Score=26.39 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=23.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 554 LNGLAKSGGPKRAMEIFTKMQHSEIKPDAVS--YNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+...+..|+.+-+..+++. |..++... -.+.+....+.|+.+-+.-+++...
T Consensus 181 L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 3444566666544444433 33333211 0123344456677666555555443
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.42 E-value=2.1e+02 Score=22.27 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 538 MEEDGCVPDINSHNIILNGLAKSG-GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 538 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344544443322 2233333333 34445555555554433334443333334444444
No 325
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=22.33 E-value=2e+02 Score=22.63 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=42.6
Q ss_pred ChhhHHHHHHHHH-hcCCCCCcHHHHHHhhcccCChHHHHHHhccccchHHHHHHHH
Q 006624 58 SARKLDERFIRIL-KIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFK 113 (638)
Q Consensus 58 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~~~~~a~~~f~ 113 (638)
||+.+-.- .+++ +...+++++...++.|....+|.-++..|+..+....|.+.++
T Consensus 15 sPRtlnaW-VKvv~Eek~fspEvipmF~AlSeg~Tp~Dln~mLn~vgghqaamQ~lk 70 (142)
T 2xgv_A 15 STRTVAAW-IRQTGEKGLTSPETITYWGLISQDLSSREQVQLLEVVPGLQADKDMLG 70 (142)
T ss_dssp CHHHHHHH-HHHHHHHTTTSHHHHHHHHHHTTTCCHHHHHHHHHHCCSCHHHHHHHH
T ss_pred CcHHHHHH-HHHHHHccccCchhhHHHHHHhCCCChHHHHHHHHhccccHHHHHHHH
Confidence 56665443 3444 6677888888888889888999999999998888877777775
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.78 E-value=1.6e+02 Score=23.35 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=27.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
+.+.|..++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445543332 222333333334 4456666666665555555555544455554444
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.04 E-value=2.1e+02 Score=19.64 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=4.3
Q ss_pred HHHHHHHHHhC
Q 006624 285 ALGLVQEMKGK 295 (638)
Q Consensus 285 A~~~~~~m~~~ 295 (638)
+.++++.+.+.
T Consensus 36 ~~el~~~l~~~ 46 (83)
T 2fu4_A 36 AEDLYKRLIDM 46 (83)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 33344444333
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.92 E-value=2.1e+02 Score=22.84 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=28.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAG-RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 44455543332 222333444443 444566666666665555555555555555555443
No 329
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.67 E-value=59 Score=21.18 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
++|.+.|.+|++.... +...+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 4455555555554443 4444555555544
No 330
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=20.26 E-value=2.7e+02 Score=21.93 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=43.9
Q ss_pred ChhhHHHHHHHHHhcCCCCCcHHHHHHhhcccCChHHHHHHhccccchHHHHHHHH
Q 006624 58 SARKLDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFK 113 (638)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~~~~~a~~~f~ 113 (638)
||+.+- ...+++....++|++..-++.|....+|.-++..|+..+....|.+.++
T Consensus 17 SPRTLn-aWVKvvEEkafspEvipmFsALSeg~TP~Dln~mLn~vgghqaamQ~lk 71 (145)
T 2xde_A 17 SPRTLN-AWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLK 71 (145)
T ss_dssp CHHHHH-HHHHHHHHHTSCTTHHHHHHHHTTTCCHHHHHHHHHTCCSCHHHHHHHH
T ss_pred CchHHH-HHHHHHHHhcCCcchhHHHHHHHcccCcHHHHHHHHhccchHHHHHHHH
Confidence 666544 3445677777889998999999999999999999998888888877776
No 331
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.26 E-value=1.5e+02 Score=22.97 Aligned_cols=42 Identities=7% Similarity=0.062 Sum_probs=17.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
+.+...+.+-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333334444444444444433344444444444444443
No 332
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.01 E-value=6.6e+02 Score=25.06 Aligned_cols=65 Identities=8% Similarity=-0.044 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
...+|.+++.|...+.++.|.+++....--.. .++ ..-+.-+.+.+.-++++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 47899999999999999999999987632100 111 112334567778899999999999988765
Done!