BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006625
(638 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2
SV=1
Length = 579
Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 3/183 (1%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+ K
Sbjct: 396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 453
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
PV+LLFSVN SG F G+AEM VD+N W QDKW G F V+W VKDVPNS L+H
Sbjct: 454 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 512
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA 622
I LENNENKPVTNSRDTQE+ LE+ +++KI + T I DDF YE RQ+ + K
Sbjct: 513 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK 572
Query: 623 KQQ 625
++Q
Sbjct: 573 ERQ 575
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2
Length = 579
Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 3/183 (1%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+ K
Sbjct: 396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 453
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
PV+LLFSVN SG F G+AEM VD+N W QDKW G F V+W VKDVPNS L+H
Sbjct: 454 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 512
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA 622
I LENNENKPVTNSRDTQE+ LE+ +++KI + T I DDF YE RQ+ + K
Sbjct: 513 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK 572
Query: 623 KQQ 625
++Q
Sbjct: 573 ERQ 575
>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
Length = 580
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 3/183 (1%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+ K
Sbjct: 397 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 454
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
PV+LLFSVN SG F G+AEM VD+N W QDKW G F V+W VKDVPNS L+H
Sbjct: 455 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 513
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA 622
I LENNENKPVTNSRDTQE+ LE+ +++KI + T I DDF YE RQ+ + K
Sbjct: 514 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK 573
Query: 623 KQQ 625
++Q
Sbjct: 574 ERQ 576
>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1
Length = 559
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 140/230 (60%), Gaps = 10/230 (4%)
Query: 401 RAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFF 460
++ GA + S NA P +V ++ E S YN +F + F
Sbjct: 340 QSGGANSDSNSVGNAQPTSAPSVESHPVLEKLKAAHS-------YNPKEFDWNLKSGRVF 392
Query: 461 VIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGL 520
+IKSYSEDD+H+SIKYS+W ST +GNK+LD A++ K PV+LLFSVN SG F G+
Sbjct: 393 IIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGV 449
Query: 521 AEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQ 580
AEM PVD+ + W QDKW G F VKW VKDVPN+ L+HI LENN+NKPVTNSRDTQ
Sbjct: 450 AEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQ 509
Query: 581 EIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQFQKQ 630
E+ LE+ +++KI + T I DDF YE RQ+ + + ++Q KQ
Sbjct: 510 EVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKERQNRNKQ 559
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
Length = 559
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 126/186 (67%), Gaps = 3/186 (1%)
Query: 445 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCP 504
YN +F + F+IKSYSEDD+H+SIKYS+W ST +GNK+LD+A++ K P
Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---P 433
Query: 505 VFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHIT 564
V+LLFSVN SG F G+AEM PVD+ + W QDKW G F V+W VKDVPN+ L+HI
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493
Query: 565 LENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQ 624
LENN+NKPVTNSRDTQE+ LE+ +++KI + T I DDF YE RQ+ + + ++
Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKER 553
Query: 625 QQFQKQ 630
Q KQ
Sbjct: 554 QSRNKQ 559
>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2
Length = 585
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 3/169 (1%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+ K
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
P++LLFSVN SG F G+AEM VD+N W QDKW G F VKW VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 611
I LENN+NKPVTNSRDTQE+ LE+ +++KI T I DDF YE
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567
>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1
Length = 585
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 3/169 (1%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+ K
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
P++LLFSVN SG F G+AEM VD+N W QDKW G F VKW VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 611
I LENN+NKPVTNSRDTQE+ LE+ +++KI T I DDF YE
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567
>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1
Length = 585
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 116/169 (68%), Gaps = 3/169 (1%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
+ YN DF + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+ K
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 562
P++LLFSVN SG F G+AEM VD+N W QDKW G F VKW VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518
Query: 563 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 611
I LENN+NKPVTNSRDTQE+ LE+ +++KI T I DDF YE
Sbjct: 519 IRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYE 567
>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1
Length = 306
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 9/157 (5%)
Query: 456 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 515
+++FFVIKS S V +S +W+ST GNK+L AY++ ++ VFL FS+NTSG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAK---VFLFFSINTSG 210
Query: 516 QFVGLAEMAGPVDFNKNVEYWQ-QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVT 574
+F G+AEM + + + W+ + K+ F V+W IV+D+ N LK + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270
Query: 575 NSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYE 611
+SRDTQEI G+ +I +FK S D F F +
Sbjct: 271 HSRDTQEIPYSIGISIINLFKTQDS-----DIFSFLD 302
>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3
Length = 727
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 456 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 515
DA+FF+IKS + ++V + VW++ P KKL+ A++ A+ V L+FSV SG
Sbjct: 354 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 407
Query: 516 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 569
+F G A ++ + +W G F + W +++P + H+T NE
Sbjct: 408 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 467
Query: 570 NKPVTNSRDTQEIKLEQGLKLIKIF 594
+KPV RD QEI+LE G +L +F
Sbjct: 468 HKPVKIGRDGQEIELECGTQLCLLF 492
>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1
SV=1
Length = 738
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 456 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 515
DA+FF+IKS + ++V + VW++ P KKL+ A++ A+ V L+FSV SG
Sbjct: 357 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 410
Query: 516 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 569
+F G A ++ + +W G F + W +++P + H+T NE
Sbjct: 411 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470
Query: 570 NKPVTNSRDTQEIKLEQGLKLIKIF 594
+KPV RD QEI+LE G +L +F
Sbjct: 471 HKPVKIGRDGQEIELECGTQLCLLF 495
>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1
Length = 671
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516
++F++KS + ++ S + +W++TP+ +KL+ A+ E S V+L+FSV SG
Sbjct: 529 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWE------SSMVYLVFSVQGSGH 582
Query: 517 FVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNS 576
F G + M+ + K+ + W G F V+W + +P H+ N+NK V S
Sbjct: 583 FQGFSRMSSEIGREKS-QDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQIS 641
Query: 577 RDTQEIKLEQGLKLIKIFKDHP 598
RD QE++ + G +L+++++ P
Sbjct: 642 RDGQELEPQVGEQLLQLWERLP 663
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2
PE=2 SV=1
Length = 1445
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 458 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 517
++F++KS + ++ S + +W++TP+ +KL+ A+ E S V+L+FSV SG F
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWE------SSMVYLVFSVQGSGHF 1357
Query: 518 VGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSR 577
G + M+ + K+ + W G F V+W + +P H+ N+NK V SR
Sbjct: 1358 QGFSRMSSEIGREKS-QDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISR 1416
Query: 578 DTQEIKLEQGLKLIKIFKDHP 598
D QE++ + G +L+++++ P
Sbjct: 1417 DGQELEPQVGEQLLQLWERLP 1437
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2
PE=1 SV=2
Length = 1430
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516
++F++KS + ++ S + +W++TP+ +KL+ A+ E S V+L+FSV SG
Sbjct: 1288 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWE------SSIVYLVFSVQGSGH 1341
Query: 517 FVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNS 576
F G + M+ + K+ + W G F V+W + +P H+ N+NK V S
Sbjct: 1342 FQGFSRMSSEIGREKS-QDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQIS 1400
Query: 577 RDTQEIKLEQGLKLIKIFKDHP 598
RD QE++ G +L+++++ P
Sbjct: 1401 RDGQELEPLVGEQLLQLWERLP 1422
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 443 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 502
D+ N+ P ++FV+KS + ++ S++ VWA+ + KL+ A+ +
Sbjct: 223 DQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVEN---- 278
Query: 503 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGC----FPVKWHIVKDVPNS 558
V L+FSVN + F G A+M + W+ + T F VKW + ++
Sbjct: 279 --VILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFH 336
Query: 559 LLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQ 618
+++ NEN PV SRD QE++ G +L + P + R +
Sbjct: 337 KTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKR----E 392
Query: 619 EKKAK 623
E+KAK
Sbjct: 393 EEKAK 397
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516
+++F++KS + +++ S++ +WA+ + KL+ A++ + V L+FS+N +
Sbjct: 260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIEN------VILIFSINRTRN 313
Query: 517 FVGLAEMAGPVDFNKNVEYWQQDKWTGC----FPVKWHIVKDVPNSLLKHITLENNENKP 572
F G A+M + W+ T F ++W + ++ H+ N+N P
Sbjct: 314 FQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQKTHHLRNPYNDNLP 373
Query: 573 VTNSRDTQEIKLEQGLKLIKIFKDHPSK--TCIL 604
V SRD QE++ G +L + P T IL
Sbjct: 374 VKISRDCQELEPFIGEQLASLLYLEPDSELTAIL 407
>sp|O74958|MMI1_SCHPO YTH domain-containing protein mmi1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mmi1 PE=1 SV=3
Length = 488
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/139 (18%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516
+++F++ +E + + K S+WA + +K++ AY++A V+ +F +
Sbjct: 350 SRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKAS-------VYFIFVAQQTYN 402
Query: 517 FVGLAEMAGPVDFNKN-VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTN 575
+G A++ D N + +W G +KW ++ ++ + I + +
Sbjct: 403 ALGYAQVVS--DLNSTELPFWSDSSHAGGVRIKWIKTCNLFSAEISEIVSHMDHG---SE 457
Query: 576 SRDTQEIKLEQGLKLIKIF 594
+RD E+ ++G +L +
Sbjct: 458 ARDGMEMMYDEGSRLCTLI 476
>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes
GN=MDC1 PE=3 SV=1
Length = 2171
Score = 35.8 bits (81), Expect = 0.95, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 172 SSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQP 231
SS +P V PT ++ S + DQ P+ E T+ + G N VK P P QP
Sbjct: 1604 SSVKTPETVVPTAPELQPSTSTDQ-PVTPEPTSQATRGRTNRSSVKTPESIVPIAPELQP 1662
Query: 232 FNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVAS 282
S N L P S R N +++P P + P + P S
Sbjct: 1663 STSRN-----QLVTPEPTSRATRCRTNRSSVKTPEPVV--PTAPEPHPTTS 1706
Score = 33.5 bits (75), Expect = 4.7, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 172 SSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQP 231
SS +P PV PT ++ S + DQ P+ E T + G N VK P P QP
Sbjct: 1235 SSVKTPEPVVPTAPELQPSTSTDQ-PVTSEPTYQATRGRKNRSSVKTPEPVVPTAPELQP 1293
Query: 232 FNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSP 265
S + + P P S R N+ +++P
Sbjct: 1294 STSTD---QPVTP--KPTSRTTRSRTNMSSVKNP 1322
Score = 32.7 bits (73), Expect = 9.9, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 166 QPITPT------------SSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANA 213
QP+TP SS +P V PT ++ S + DQ P+ E T+ + G N
Sbjct: 1545 QPVTPEPTSQVTRGRTDRSSVKTPETVVPTAPELQASASTDQ-PVTSEPTSRTTRGRKNR 1603
Query: 214 GGVKGNNGSAPFKPTYQPFNSNN 236
VK P P QP S +
Sbjct: 1604 SSVKTPETVVPTAPELQPSTSTD 1626
>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1
PE=3 SV=1
Length = 2173
Score = 35.8 bits (81), Expect = 1.2, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 133 PYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVA 192
P+P S A P P+ T Q P+ + T SS +P PV PT ++ S +
Sbjct: 1119 PFPATSAAPEPHPSTST-AQPVTPK--PTSQATRSRTNRSSVKTPEPVVPTVPELQPSTS 1175
Query: 193 ADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNN 236
DQ P+ E T+ + G N VK P P NS +
Sbjct: 1176 TDQ-PVASEPTSQATRGRKNRSSVKTPEAVVPTALELHPSNSTD 1218
Score = 34.7 bits (78), Expect = 2.7, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 166 QPITPT------------SSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANA 213
QP+TP SS +P PV PT ++ S + DQ P+ E T+ + G N
Sbjct: 1260 QPVTPKPTSEAIRSRTNRSSVKTPEPVVPTVPELQPSTSTDQ-PVTSEPTSQATRGRTNR 1318
Query: 214 GGVKGNNGSAPFKPTYQPFNSNN 236
VK P P QP S +
Sbjct: 1319 SSVKTPEPVVPTVPELQPSTSTD 1341
>sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1
PE=1 SV=3
Length = 2089
Score = 33.9 bits (76), Expect = 3.6, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 172 SSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQP 231
SS +P PV PT ++ S + DQ P+ E T + G N VK P P +P
Sbjct: 1235 SSVKTPEPVVPTAPELQPSTSTDQ-PVTSEPTYQATRGRKNRSSVKTPEPVVPTAPELRP 1293
Query: 232 FNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSP---IPWLDGPVISDA--RPVASNTFN 286
S + R P P S R N+ +++P +P IS + +PV +
Sbjct: 1294 STSTD---RPVTP--KPTSRTTRSRTNMSSVKTPETVVPTAPELQISTSTDQPVTPKPTS 1348
Query: 287 SSISNVNNVASSRN 300
+ + N++S +N
Sbjct: 1349 RTTRSRTNMSSVKN 1362
Score = 32.7 bits (73), Expect = 8.9, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 133 PYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVA 192
P+P S A P P+ T Q P+ + T SS +P PV PT ++ S +
Sbjct: 1117 PFPATSAAPEPHPSTST-AQPVTPK--PTSQATRSRTNRSSVKTPEPVVPTAPELQPSTS 1173
Query: 193 ADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNN 236
DQ P+ E T+ + G + VK P QP S +
Sbjct: 1174 TDQ-PVTSEPTSQVTRGRKSRSSVKTPETVVPTALELQPSTSTD 1216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,278,343
Number of Sequences: 539616
Number of extensions: 14265943
Number of successful extensions: 35677
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 349
Number of HSP's that attempted gapping in prelim test: 33839
Number of HSP's gapped (non-prelim): 1369
length of query: 638
length of database: 191,569,459
effective HSP length: 124
effective length of query: 514
effective length of database: 124,657,075
effective search space: 64073736550
effective search space used: 64073736550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)