Query 006625
Match_columns 638
No_of_seqs 191 out of 364
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 12:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 1.1E-82 2.5E-87 682.0 34.7 459 94-626 3-468 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 1.2E-48 2.5E-53 362.6 8.7 136 456-597 1-140 (140)
3 KOG1902 Putative signal transd 100.0 2.6E-41 5.7E-46 348.5 11.9 150 442-599 59-213 (441)
4 PRK00809 hypothetical protein; 94.6 0.15 3.2E-06 48.9 8.0 122 458-591 2-142 (144)
5 PF01878 EVE: EVE domain; Int 82.4 3.3 7.1E-05 38.6 6.0 128 458-593 1-143 (143)
6 PRK02268 hypothetical protein; 41.9 1.9E+02 0.0042 28.3 9.1 122 458-595 3-137 (141)
7 PF03875 Statherin: Statherin; 41.5 26 0.00056 27.6 2.5 28 129-167 14-41 (42)
8 PF10539 Dev_Cell_Death: Devel 35.2 68 0.0015 31.0 4.8 116 465-594 8-130 (130)
9 COG1355 Predicted dioxygenase 31.7 52 0.0011 35.4 3.8 48 571-619 155-204 (279)
10 KOG0260 RNA polymerase II, lar 14.6 2.8E+03 0.06 27.6 15.8 140 130-294 1458-1603(1605)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=1.1e-82 Score=682.02 Aligned_cols=459 Identities=44% Similarity=0.673 Sum_probs=328.5
Q ss_pred CCCCCCccccccccCCCCCCcccccCCCcccc-ccCCCCC--CCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 006625 94 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGYA--PYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT 169 (638)
Q Consensus 94 ~~~~w~~y~~Yvn~dg~e~~~~vy~dn~Sl~y-~~Gygy~--pYg~Ysp~~sp~p~~g~DgQly~~q~y~yp-~yyq~~~ 169 (638)
.+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++. ||.|++ ..++++|.|++++.+|++.+. ++|-
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~~~~~~~~~--- 74 (487)
T KOG1901|consen 3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSS---YAASSLGSDGSLGEPQQNPLYSPSYG--- 74 (487)
T ss_pred CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCc---ccccCCCCCccccccccccccCCCcC---
Confidence 4456 899999999994333 55555555444 3333432 344443 344588999999999999997 5554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCccccCCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006625 170 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA 249 (638)
Q Consensus 170 ~~~~~y~~~~~~~~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~gs~g~g~~~~~~p~ 249 (638)
+...|+........++++....... ...+..+. +. +.+..|... ..+.++ ..-+.+.|.
T Consensus 75 ~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~--~~~~~p~~~---~~~~~~-~~~~~~~~~ 133 (487)
T KOG1901|consen 75 PVSLPTASTSGSSTFSNLTLRKAPG---FSSSGPKQ------------GG--SMPSDPRGS---AQRNSS-ISASPGYPP 133 (487)
T ss_pred cccCccccccCcccccchhhhcccc---cccccccc------------Cc--CCCCCCccc---cccccc-ccCCCCCCC
Confidence 2222333333333344443322221 11111111 10 122222222 111111 122223444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCccccccccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 006625 250 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM 328 (638)
Q Consensus 250 ~gy~~~~~~~~g~~~~~~~~d~~~~s~~~~~~~~~~s~~~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 328 (638)
.+|.+|++.++..... +..++..+.+++.+....+.+.++ ...+|+
T Consensus 134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 180 (487)
T KOG1901|consen 134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY 180 (487)
T ss_pred cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence 5777777666641100 112222223333333333333332 345665
Q ss_pred ccCccCC-CccCCCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCCC-CccccccccCCCCCCCCC
Q 006625 329 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNE-NMDGLNELNRGPRAKGAK 406 (638)
Q Consensus 329 ~~~~~y~-~~~y~~~g~~~~~~~~~g~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~~-~~~~~~e~~rgpr~~~~~ 406 (638)
+.++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+. .......++ ..+.++|+|||||+...+
T Consensus 181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~nrg~~s~~~~ 257 (487)
T KOG1901|consen 181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGI-NYPRLPSDEAGSDSLNEQNRGPRSSDSR 257 (487)
T ss_pred --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCcccccc-cCCCccccccccccccccccCccccccc
Confidence 55555 3456666656666888999999988999999999975544442 222223332 378899999999999999
Q ss_pred CCCCCCCCcccccccccccCCCCcccCCcccCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchH
Q 006625 407 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN 486 (638)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~~~~aRFFIIKS~nedNIhkSIKygVWaTT~~nn 486 (638)
++.........+...+. .+....++++++||+++|...+.+||||||||++|||||+||||+|||+|.++|
T Consensus 258 ~~~~~~~~~~~~~~~s~---------~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN 328 (487)
T KOG1901|consen 258 GQDINSSGPTEAGSASA---------PESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN 328 (487)
T ss_pred CccccCCcchhcccccc---------ccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence 88765443333332111 112256889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeeeEEecCCCCCCCCcccccccCCcCccceeEEEeecCCCccccccccC
Q 006625 487 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 566 (638)
Q Consensus 487 kkLd~AFrea~~k~~~~pVfLfFSVN~Sg~FqG~AeM~SpVdf~k~~~~WqqdKw~G~F~VeWi~vkdVPf~~lkHI~Np 566 (638)
||||+|||+++.+.++||||||||||+||||||+|||++||||+++++||+||||.|.|+||||+||||||..|+||+++
T Consensus 329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le 408 (487)
T KOG1901|consen 329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE 408 (487)
T ss_pred hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCcccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhhh
Q 006625 567 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQ 626 (638)
Q Consensus 567 ~NeNKPVt~SRDGQEIe~e~G~qLLkIF~~~~~~tSILDDF~~ye~rek~~~e~r~~~q~ 626 (638)
+|||||||++||+|||.+++|+|||+||+++.++|||||||.|||+||+.|+++|+|++.
T Consensus 409 NNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~ 468 (487)
T KOG1901|consen 409 NNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP 468 (487)
T ss_pred cCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence 999999999999999999999999999999999999999999999999999999999864
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=1.2e-48 Score=362.57 Aligned_cols=136 Identities=50% Similarity=0.896 Sum_probs=114.3
Q ss_pred CceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeeeEEecCCCCCCCCccc
Q 006625 456 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY 535 (638)
Q Consensus 456 ~aRFFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN~Sg~FqG~AeM~SpVdf~k~~~~ 535 (638)
++|||||||+|++|||+|+++|||+|+++++++|++||++++ +||||||||+||+|||||+|+|+++++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~------~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESR------NVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-------EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCC------CEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 589999999999999999999999999999999999999984 89999999999999999999999999999999
Q ss_pred cc----ccCCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHhhcC
Q 006625 536 WQ----QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 597 (638)
Q Consensus 536 Wq----qdKw~G~F~VeWi~vkdVPf~~lkHI~Np~NeNKPVt~SRDGQEIe~e~G~qLLkIF~~~ 597 (638)
|. ..+|.|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~ 140 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ 140 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence 95 469999999999999999999999999999999999999999999999999999999864
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=348.50 Aligned_cols=150 Identities=36% Similarity=0.610 Sum_probs=139.3
Q ss_pred cccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeeeE
Q 006625 442 RDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLA 521 (638)
Q Consensus 442 ~~qyN~~df~~~~~~aRFFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN~Sg~FqG~A 521 (638)
.+++++...+. -.+|||||||.|.+||.+|++.|||+||+.|++||+.||+++ ..||||||||.||||||||
T Consensus 59 s~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~A 130 (441)
T KOG1902|consen 59 ADQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFA 130 (441)
T ss_pred hhhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhh
Confidence 36666666555 588999999999999999999999999999999999999998 4899999999999999999
Q ss_pred EecCCCCCCCCcccccc-----cCCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHhhc
Q 006625 522 EMAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKD 596 (638)
Q Consensus 522 eM~SpVdf~k~~~~Wqq-----dKw~G~F~VeWi~vkdVPf~~lkHI~Np~NeNKPVt~SRDGQEIe~e~G~qLLkIF~~ 596 (638)
+|+|+|-..+.-..|.+ ..|++.|+||||++++|||.++.||+|||||||||+++||||||++++|+|||.|+..
T Consensus 131 rMsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~ 210 (441)
T KOG1902|consen 131 RMSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPP 210 (441)
T ss_pred hhcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCC
Confidence 99999998888777865 6799999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 006625 597 HPS 599 (638)
Q Consensus 597 ~~~ 599 (638)
.++
T Consensus 211 ~p~ 213 (441)
T KOG1902|consen 211 DPS 213 (441)
T ss_pred Ccc
Confidence 765
No 4
>PRK00809 hypothetical protein; Provisional
Probab=94.59 E-value=0.15 Score=48.91 Aligned_cols=122 Identities=11% Similarity=0.156 Sum_probs=75.1
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeeeEEecCCCCCCC
Q 006625 458 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFNK 531 (638)
Q Consensus 458 RFFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN------~Sg~FqG~AeM~SpVdf~k 531 (638)
+|+|+=+ |+||+.+....|||-.....-.-|.+ . .....+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~----M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK----V----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh----C----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 6777766 99999999999999996542222221 1 124678888887 5789999999998752222
Q ss_pred Cccccc------ccCCcCccceeEEEeec--CCCcccc----ccccCCCCCCce-eecCCCcccchHHHHHHH
Q 006625 532 NVEYWQ------QDKWTGCFPVKWHIVKD--VPNSLLK----HITLENNENKPV-TNSRDTQEIKLEQGLKLI 591 (638)
Q Consensus 532 ~~~~Wq------qdKw~G~F~VeWi~vkd--VPf~~lk----HI~Np~NeNKPV-t~SRDGQEIe~e~G~qLL 591 (638)
+ .+|. .+.+--..+|+++.+.+ ||.+.|. -|++.-.=...+ ..++ .||..+....|+
T Consensus 73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~ 142 (144)
T PRK00809 73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE 142 (144)
T ss_pred c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence 1 2332 12222467899998888 7766551 112211101222 4555 777777665554
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=82.41 E-value=3.3 Score=38.61 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=62.5
Q ss_pred eEEEEecC----ChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeeeEEecCCCCCC--
Q 006625 458 KFFVIKSY----SEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPVDFN-- 530 (638)
Q Consensus 458 RFFIIKS~----nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN-~Sg~FqG~AeM~SpVdf~-- 530 (638)
+|+|+|+. +-+++ .-.+..+|.-..+...+- .+++.+ ....+||+.-+ +.+.|.|+|+.++..-.+
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk----~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK----PGDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC------TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC----CCCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 68999998 66666 444445555333322221 444432 23567777766 689999999999864221
Q ss_pred ---CCcccccccC--CcCccceeEEEeec--CCCccccccccCCCCCCceeec-CCCcccchHHHHHHHHH
Q 006625 531 ---KNVEYWQQDK--WTGCFPVKWHIVKD--VPNSLLKHITLENNENKPVTNS-RDTQEIKLEQGLKLIKI 593 (638)
Q Consensus 531 ---k~~~~WqqdK--w~G~F~VeWi~vkd--VPf~~lkHI~Np~NeNKPVt~S-RDGQEIe~e~G~qLLkI 593 (638)
....++.... .....+|+++.+-+ |+...|+.. ..+.+-.-|+.. .--.+|..+.-..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 1112122111 22356788886544 444566432 111111122222 23356666666666553
No 6
>PRK02268 hypothetical protein; Provisional
Probab=41.87 E-value=1.9e+02 Score=28.26 Aligned_cols=122 Identities=10% Similarity=0.129 Sum_probs=70.1
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchHH-HHHHHHHHHHhhcCCCCEEEEEEeC-------CCCCeeeeEEecCCCCC
Q 006625 458 KFFVIKSYSEDDVHKSIKYSVWASTPNGNK-KLDAAYQEAQQKSRSCPVFLLFSVN-------TSGQFVGLAEMAGPVDF 529 (638)
Q Consensus 458 RFFIIKS~nedNIhkSIKygVWaTT~~nnk-kLd~AFrea~~k~~~~pVfLfFSVN-------~Sg~FqG~AeM~SpVdf 529 (638)
+|.| =.-|+||+.+.++.|+|-.. |+.+ -|.+ - ....-+|++|=. .=..|.+++++++.--+
T Consensus 3 ~yWI-~v~s~~hv~~g~~~gf~qv~-hgK~apl~R----m----kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Y 72 (141)
T PRK02268 3 RYWI-GVVSAEHVRRGVEGGFMQVC-HGKAAPLRR----M----KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPY 72 (141)
T ss_pred ceEE-EEccHHHHHHHHhCCEEEeC-CCccchhhc----C----CCCCEEEEEeceEecCCCcccceEEEEEEEcCCceE
Confidence 4553 35679999999999999774 3332 2221 1 123567777722 34689999999985322
Q ss_pred CCCcccccccCCc-CccceeEEEeecCCCccc----cccccCCCCCCceeecCCCcccchHHHHHHHHHhh
Q 006625 530 NKNVEYWQQDKWT-GCFPVKWHIVKDVPNSLL----KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFK 595 (638)
Q Consensus 530 ~k~~~~WqqdKw~-G~F~VeWi~vkdVPf~~l----kHI~Np~NeNKPVt~SRDGQEIe~e~G~qLLkIF~ 595 (638)
...+. ..|. =.++|+|+.+.++|++-| ++|++.-+=.... -.---||..+-.+.+.+.+.
T Consensus 73 q~~m~----~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~f--r~g~~eI~e~Df~~I~~am~ 137 (141)
T PRK02268 73 QVEMA----PGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDRKNWGYQF--RFGHFEISKHDFETIASAMT 137 (141)
T ss_pred ecccC----CCceeEEEEeeEeecCccchHHhhcccceeeCcchhhHhh--cCCcEecCHHHHHHHHHHhc
Confidence 21110 0111 136799999999998744 3444432222222 12336777766666665554
No 7
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=41.54 E-value=26 Score=27.61 Aligned_cols=28 Identities=46% Similarity=0.928 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCC
Q 006625 129 YGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQP 167 (638)
Q Consensus 129 ygy~pYg~Ysp~~sp~p~~g~DgQly~~q~y~yp~yyq~ 167 (638)
++|.-|||| -|+|-- -|| +|.|| |+|||
T Consensus 14 ~~~grygpy----qp~peq----~ly-pqpyq--p~yqq 41 (42)
T PF03875_consen 14 FFYGRYGPY----QPFPEQ----PLY-PQPYQ--PPYQQ 41 (42)
T ss_pred hcccccCCc----CCCCCC----cCC-CCCCC--Ccccc
Confidence 344446777 555542 266 66655 44543
No 8
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=35.16 E-value=68 Score=31.01 Aligned_cols=116 Identities=15% Similarity=0.271 Sum_probs=77.7
Q ss_pred CChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeeeEEecCCCCCCCCcccccccC----
Q 006625 465 YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK---- 540 (638)
Q Consensus 465 ~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN~Sg~FqG~AeM~SpVdf~k~~~~WqqdK---- 540 (638)
+|.+-+..+.++.+.-....... |-+ ....+-++|||= -..++..|+=|-+|.-..+....-|..+.
T Consensus 8 Cn~~T~~ECf~~~lFGLP~~~~~-----~V~--~I~pG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~ 78 (130)
T PF10539_consen 8 CNNKTKPECFRRQLFGLPAGHKD-----FVK--KIKPGMPLFLFN--YSDRKLYGIFEATSDGGMNIEPYAFSGSGSGES 78 (130)
T ss_pred ECCCCHHHHHhcccccCChhhhh-----HHh--eeCCCCEEEEEE--cCCCEEEEEEEecCCCccCcChhhhCCCCCCCc
Confidence 44455677778888777654322 111 122345677652 36789999999999887777777787632
Q ss_pred -Cc--CccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHh
Q 006625 541 -WT--GCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIF 594 (638)
Q Consensus 541 -w~--G~F~VeWi~vkdVPf~~lkHI~Np~NeNKPVt~SRDGQEIe~e~G~qLLkIF 594 (638)
+- =.|.|.| .+..||-+.++|++-+|=.+ ..+=-.||...+.+.||.||
T Consensus 79 ~fPAQVrf~i~~-~C~PL~E~~fk~aI~~Ny~~----~~kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 79 PFPAQVRFRIRW-DCPPLPESQFKPAIKDNYYD----KNKFRFELSHQQVRKLLSLF 130 (130)
T ss_pred ccceEEEEEEee-eeecCCHHHHHHHHHHhCCC----CCcccCcCCHHHHHHHHHhC
Confidence 22 2477777 56689999999988543111 12446899999999999987
No 9
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=31.72 E-value=52 Score=35.45 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=39.6
Q ss_pred CceeecCCCcccchHHHHHHHHHhhcCCCCcccc--ccccchHHHHHHHHH
Q 006625 571 KPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCIL--DDFGFYETRQKTIQE 619 (638)
Q Consensus 571 KPVt~SRDGQEIe~e~G~qLLkIF~~~~~~tSIL--DDF~~ye~rek~~~e 619 (638)
-||..+.-..|+..+.|+.++++.++.. ++.|. -||.+||-.+..++.
T Consensus 155 VPi~m~~q~~~~a~~ig~~i~k~i~e~~-~~liIaSSDf~HYep~~~~~~~ 204 (279)
T COG1355 155 VPICMGMQDKEVARDIGRAIAKVIKELG-DALIIASSDFTHYEPQDIVRRK 204 (279)
T ss_pred EeEEEecccHHHHHHHHHHHHHHHhhcC-CeEEEEecCccccCchhhhhhh
Confidence 4899999999999999999999999988 66555 499999766655543
No 10
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=14.65 E-value=2.8e+03 Score=27.63 Aligned_cols=140 Identities=23% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCCC----CCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCccccCCC
Q 006625 130 GYAP----YPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNG 205 (638)
Q Consensus 130 gy~p----Yg~Ysp~~sp~p~~g~DgQly~~q~y~yp~yyq~~~~~~~~y~~~~~~~~q~e~~~~~~~~~~~~~~~~~~~ 205 (638)
+|.| |.|=+|.-||...- |+|-.-.|+|-=+.-.|++..|.|++...+....+-+...-.-....-+-..
T Consensus 1458 ~ysptsp~ys~tsp~~sptsps------ysptspsysptspsysptspsysptspsysptspsysptspsysptspsysp 1531 (1605)
T KOG0260|consen 1458 NYSPTSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1531 (1605)
T ss_pred CCCCCCCccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCcccCCCccCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q 006625 206 KSNGVANAGGVKGNNGSAPFKPTYQ-PFNSNNTYGRGSLPGRGPAS-GYQDPRCNLDGMRSPIPWLDGPVISDARPVASN 283 (638)
Q Consensus 206 ~~~~~~~~g~~~~~~~~~~~~p~~~-~~~~~gs~g~g~~~~~~p~~-gy~~~~~~~~g~~~~~~~~d~~~~s~~~~~~~~ 283 (638)
++ -.+-|++. +.+.+.+| .-..|...|++ .|....-+|..+-.-+. ..+.||. ...+-+
T Consensus 1532 ts---------------psysptspsysptspsy-sptspsysptsp~ysptspsysptspsys--~~~~ysp-~sp~ys 1592 (1605)
T KOG0260|consen 1532 TS---------------PSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYS--TSPSYSP-TSPSYS 1592 (1605)
T ss_pred CC---------------CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCcc--CCCCCCC-CCCCCC
Q ss_pred ccccccccCCC
Q 006625 284 TFNSSISNVNN 294 (638)
Q Consensus 284 ~~s~~~~~~~~ 294 (638)
..|++|+..+.
T Consensus 1593 ptsp~ysp~sp 1603 (1605)
T KOG0260|consen 1593 PTSPSYSPTSP 1603 (1605)
T ss_pred CCCCCCCCCCC
Done!