Query 006625
Match_columns 638
No_of_seqs 191 out of 364
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 3.2E-54 1.1E-58 414.6 9.3 166 437-617 8-179 (180)
2 2yu6_A YTH domain-containing p 100.0 1.8E-52 6.3E-57 388.8 11.1 138 453-597 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 96.4 0.007 2.4E-07 56.2 7.6 125 458-594 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 95.4 0.032 1.1E-06 51.9 7.2 126 457-593 4-147 (147)
5 2eve_A Hypothetical protein ps 58.5 20 0.00069 34.1 6.8 130 458-597 2-152 (157)
6 3eop_A Thymocyte nuclear prote 41.7 25 0.00085 34.1 4.5 131 458-595 2-168 (176)
7 2ar1_A Hypothetical protein; s 39.3 49 0.0017 31.9 6.2 130 456-594 18-166 (172)
8 2jvf_A De novo protein M7; tet 25.5 78 0.0027 27.1 4.4 53 572-624 9-72 (96)
9 3goe_A DNA repair protein RAD6 14.2 1.3E+02 0.0044 26.0 3.3 45 459-509 11-55 (82)
10 1zce_A Hypothetical protein AT 11.6 2.4E+02 0.0083 26.7 4.7 130 458-597 3-140 (155)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.2e-54 Score=414.64 Aligned_cols=166 Identities=31% Similarity=0.539 Sum_probs=156.1
Q ss_pred cCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 006625 437 SLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 516 (638)
Q Consensus 437 ~~~~~~~qyN~~df~~~~~~aRFFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN~Sg~ 516 (638)
...+++||||+.++.. +++|||||||++++|||+||+||||+||++||++|++||++++ +||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~------~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR------SVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSS------CEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCC------eEEEEEEeCCCCc
Confidence 4567899999988875 7999999999999999999999999999999999999999984 8999999999999
Q ss_pred eeeeEEecCCCCCCCCccccc------ccCCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHH
Q 006625 517 FVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKL 590 (638)
Q Consensus 517 FqG~AeM~SpVdf~k~~~~Wq------qdKw~G~F~VeWi~vkdVPf~~lkHI~Np~NeNKPVt~SRDGQEIe~e~G~qL 590 (638)
|||||||+++++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999998888896 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccccccccchHHHHHHH
Q 006625 591 IKIFKDHPSKTCILDDFGFYETRQKTI 617 (638)
Q Consensus 591 LkIF~~~~~~tSILDDF~~ye~rek~~ 617 (638)
|+||+.+ ++|++|+.|+|..
T Consensus 160 ~~lf~~~-------~~~~~~~~~~~~~ 179 (180)
T 2yud_A 160 CLLFPPD-------ESIDLYQVIHKMR 179 (180)
T ss_dssp HHHSCCC-------SSSCSHHHHHHHH
T ss_pred HHhcccC-------cCccHHHHHHhhc
Confidence 9999986 6899999998753
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.8e-52 Score=388.76 Aligned_cols=138 Identities=28% Similarity=0.552 Sum_probs=132.6
Q ss_pred CCCCceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeeeEEecCCCCCCCC
Q 006625 453 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 532 (638)
Q Consensus 453 ~~~~aRFFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN~Sg~FqG~AeM~SpVdf~k~ 532 (638)
...++|||||||+++||||+|++||||+||++||++|++||++++ +||||||||+||+|||||+|++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~------~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS------CEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCC------cEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 357899999999999999999999999999999999999999984 99999999999999999999999999 56
Q ss_pred cccccccCCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHhhcC
Q 006625 533 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 597 (638)
Q Consensus 533 ~~~WqqdKw~G~F~VeWi~vkdVPf~~lkHI~Np~NeNKPVt~SRDGQEIe~e~G~qLLkIF~~~ 597 (638)
..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 67799999999999999999999999999999999999999999999999999999999999874
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.41 E-value=0.007 Score=56.19 Aligned_cols=125 Identities=11% Similarity=0.173 Sum_probs=81.3
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCC--------CCeeeeEEecCCCCC
Q 006625 458 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 529 (638)
Q Consensus 458 RFFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN~S--------g~FqG~AeM~SpVdf 529 (638)
+|.|+|| +.|++...++.|+|-. .+..+..-++ - .....+||++-+.. ..|.|++++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh---C----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 6899998 8999999999999977 5544432221 1 22467888887765 899999999985522
Q ss_pred CCCcccccccCC-----cCccceeEEEeecCCCccccccccCCCCC-----CceeecCCCcccchHHHHHHHHHh
Q 006625 530 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKHITLENNEN-----KPVTNSRDTQEIKLEQGLKLIKIF 594 (638)
Q Consensus 530 ~k~~~~WqqdKw-----~G~F~VeWi~vkdVPf~~lkHI~Np~NeN-----KPVt~SRDGQEIe~e~G~qLLkIF 594 (638)
+.+ .+|-+.+| --...|+++.+..|+++.++. .+.+-.| ..+ .-+--++|..+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 12222222 124568899889998887664 3333221 111 12337999999999998765
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.032 Score=51.87 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=77.4
Q ss_pred ceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeeeEEecCCCC--
Q 006625 457 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVD-- 528 (638)
Q Consensus 457 aRFFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN------~Sg~FqG~AeM~SpVd-- 528 (638)
.+|.|+|+. ++++...++.|+|-. .+..+.+-+ .- .....+||+... .-..|.|++++++..-
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr---~M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN---KV----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH---hC----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999986 667999999999966 444333222 11 123566777332 3458999999998542
Q ss_pred ---CCCCcccccccCCcCccceeEEEe--ecCCCcccc----ccccCCC-CCCceeecCCCcccchHHHHHHHHH
Q 006625 529 ---FNKNVEYWQQDKWTGCFPVKWHIV--KDVPNSLLK----HITLENN-ENKPVTNSRDTQEIKLEQGLKLIKI 593 (638)
Q Consensus 529 ---f~k~~~~WqqdKw~G~F~VeWi~v--kdVPf~~lk----HI~Np~N-eNKPVt~SRDGQEIe~e~G~qLLkI 593 (638)
|+....+...+..--..+|+|+.. ..||...++ +|++.-+ .+.-|..+ -++|..+....||++
T Consensus 75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHTC
T ss_pred CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHhC
Confidence 222222221222223688999987 888888777 2222211 12224555 899999998888853
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=58.48 E-value=20 Score=34.14 Aligned_cols=130 Identities=14% Similarity=0.330 Sum_probs=76.0
Q ss_pred eEEEEec----CChhHHHHHhhcCeeecCCchH-HHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeeeEEecCC-----
Q 006625 458 KFFVIKS----YSEDDVHKSIKYSVWASTPNGN-KKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP----- 526 (638)
Q Consensus 458 RFFIIKS----~nedNIhkSIKygVWaTT~~nn-kkLd~AFrea~~k~~~~pVfLfFSVN-~Sg~FqG~AeM~Sp----- 526 (638)
+|.++|| ++.||+.. -....|.-..+-. +.+- |+. ......||+.-| ....+.|+||+++.
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN~m---r~M----k~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~ 73 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARNFL---RTM----AEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDP 73 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHHHH---HHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHHHHH---Hhc----CCCCEEEEEecCCCCCEEEEEEEEeEccCCCc
Confidence 4788886 67888887 5557797544322 2221 222 123566667666 88999999999974
Q ss_pred CCCCCCcccccc------cCCcCccceeEEEe--ecCCCccccccccCCCCCCceee-cC-CCcccchHHHHHHHHHhhc
Q 006625 527 VDFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTN-SR-DTQEIKLEQGLKLIKIFKD 596 (638)
Q Consensus 527 Vdf~k~~~~Wqq------dKw~G~F~VeWi~v--kdVPf~~lkHI~Np~NeNKPVt~-SR-DGQEIe~e~G~qLLkIF~~ 596 (638)
..|+....||.. .+|. .+.|+-+.. +.|+...+|... ++.+..-|+. +| --|-|..++-..||+|=.+
T Consensus 74 t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~ 151 (157)
T 2eve_A 74 TALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLE 151 (157)
T ss_dssp GGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC-
T ss_pred ccccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHhhh
Confidence 345556667732 2443 455555543 455555555432 3333344444 23 3477888888888887554
Q ss_pred C
Q 006625 597 H 597 (638)
Q Consensus 597 ~ 597 (638)
+
T Consensus 152 ~ 152 (157)
T 2eve_A 152 H 152 (157)
T ss_dssp -
T ss_pred h
Confidence 3
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=41.72 E-value=25 Score=34.15 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=77.4
Q ss_pred eEEEEec-------------CChhHHHHH-hhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeeeEE
Q 006625 458 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAE 522 (638)
Q Consensus 458 RFFIIKS-------------~nedNIhkS-IKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN-~Sg~FqG~Ae 522 (638)
+|.++|| |+.||+... .+...|.=..+-..|-. .|+. .. ....||+--| +--.+.|+|+
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M---k~-GD~~fFYHSnck~pgIvGi~e 75 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM---KL-GEEAFFYHSNCKEPGIAGLMK 75 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC---CT-TCEEEEEECCSSSCEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhc---CC-CCEEEEEecCCCCCeEEEEEE
Confidence 5777886 667788765 34567885544322111 1222 12 2455556545 7889999999
Q ss_pred ecCCC-----CCCCCcccccc------cCCcCccceeEEEe--ecCCCccccccc-------cCCCCCCceeecC-CCcc
Q 006625 523 MAGPV-----DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHIT-------LENNENKPVTNSR-DTQE 581 (638)
Q Consensus 523 M~SpV-----df~k~~~~Wqq------dKw~G~F~VeWi~v--kdVPf~~lkHI~-------Np~NeNKPVt~SR-DGQE 581 (638)
++... .|+....||.. .+|. .+.|+-+.. +-|+...+|... -++.+..-|+.+| --|-
T Consensus 76 Vv~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~P 154 (176)
T 3eop_A 76 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQP 154 (176)
T ss_dssp EEEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEE
T ss_pred EeeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCcee
Confidence 99742 35666666642 2563 466777654 346666777553 1344444455555 3467
Q ss_pred cchHHHHHHHHHhh
Q 006625 582 IKLEQGLKLIKIFK 595 (638)
Q Consensus 582 Ie~e~G~qLLkIF~ 595 (638)
|..++-..||++-+
T Consensus 155 Vt~~ew~~I~~l~~ 168 (176)
T 3eop_A 155 LTQEEFDFVLSLEE 168 (176)
T ss_dssp ECHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHh
Confidence 77777777777654
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=39.32 E-value=49 Score=31.92 Aligned_cols=130 Identities=23% Similarity=0.330 Sum_probs=69.2
Q ss_pred CceEEEEec----CChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeeeEEecCCC---
Q 006625 456 DAKFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPV--- 527 (638)
Q Consensus 456 ~aRFFIIKS----~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN-~Sg~FqG~AeM~SpV--- 527 (638)
..+|.++|| ++.||+.. -....|.-..+-..+- -.++. .. +...||+.-| .-..+.|+|++++..
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M---k~-GD~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM---SV-GDKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC---CT-TCEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc---CC-CCEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 347999997 67788887 4446797554322111 11222 12 3455566555 889999999999842
Q ss_pred --CCCCCcccccc------cCCcCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHh
Q 006625 528 --DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIF 594 (638)
Q Consensus 528 --df~k~~~~Wqq------dKw~G~F~VeWi~v--kdVPf~~lkHI~Np~NeNKPVt~SR-DGQEIe~e~G~qLLkIF 594 (638)
.|+....||.. .+|. .+.|+-+.. +.|+...+|... .+.+..-|+.+| --+-|..++-..||++-
T Consensus 91 ~t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 166 (172)
T 2ar1_A 91 FTALDKTSEYFDPKATKEKNPWK-MVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMN 166 (172)
T ss_dssp GGGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHH
T ss_pred cccccccCcccCcccCCCCCCeE-EEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhh
Confidence 35555666642 1342 445555432 344444444321 122222222222 23455556666666554
No 8
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=25.48 E-value=78 Score=27.08 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=28.7
Q ss_pred ceeecCCCcccchHH----HHHH-------HHHhhcCCCCccccccccchHHHHHHHHHHHHHh
Q 006625 572 PVTNSRDTQEIKLEQ----GLKL-------IKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQ 624 (638)
Q Consensus 572 PVt~SRDGQEIe~e~----G~qL-------LkIF~~~~~~tSILDDF~~ye~rek~~~e~r~~~ 624 (638)
-|++.||||||+.++ |.+| -+.+.....++--..--.--|++.|++.|--++.
T Consensus 9 tikiqrdgqeieidirvstgkeleralqelekalaragarnvqitisaendeqakelleliarl 72 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDIRVSTGKELERALQELEKALARAGARNVQITISAENDEQAKELLELIARL 72 (96)
T ss_dssp EEEEEETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeeCCeEEEEEEEEcccHHHHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHH
Confidence 478899999998432 3333 2333333333322222233466777776666554
No 9
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=14.23 E-value=1.3e+02 Score=26.03 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=33.0
Q ss_pred EEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEE
Q 006625 459 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLF 509 (638)
Q Consensus 459 FFIIKS~nedNIhkSIKygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfF 509 (638)
-.+++|.-.+|++.+|+ ......+|-+||++++..+....|.|+|
T Consensus 11 ~~~~~~~~~~dl~f~I~------~~t~v~kLi~ayc~~~~I~~~~~IrllF 55 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIP------VDFTVKDLIKRYCTEVKISFHERIRLEF 55 (82)
T ss_dssp EEEEEESSSCCEEEEEE------TTSBHHHHHHHHHHHHTCCCCTTCEEEE
T ss_pred HHhhhccCCCCeEEEec------CCCCHHHHHHHHHHHcCCCcCceEEEEE
Confidence 34566666666664443 3456789999999999877777899988
No 10
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=11.60 E-value=2.4e+02 Score=26.71 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=72.2
Q ss_pred eEEEEec----CChhHHHHHhh-cCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeeeEEecCCCCCCCC
Q 006625 458 KFFVIKS----YSEDDVHKSIK-YSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 532 (638)
Q Consensus 458 RFFIIKS----~nedNIhkSIK-ygVWaTT~~nnkkLd~AFrea~~k~~~~pVfLfFSVN~Sg~FqG~AeM~SpVdf~k~ 532 (638)
+|.++|| ++.||+.+.-. .-.|.-..+-..+ .-.|+. ....-.||+--|.-..+.|+||+++....+.+
T Consensus 3 ~YWL~KSEP~~~Siddl~~~~~~~~~WdGVRNyqAr--N~mr~M----k~GD~~fFYHS~~~~gIvGi~eVv~e~ypD~t 76 (155)
T 1zce_A 3 NYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQAR--NNMRAM----KIGDKGFFYHSNEGLDVVGIVEVCALSHPDST 76 (155)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECCCCCCHHHH--HHHHTC----CTTCEEEEEETTTTCEEEEEEEEEEEEEECTT
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceecCcccHHHH--HHHHhc----cCCCEEEEEEeCCCCceEEEEEEeeeccCCCC
Confidence 5888987 56688877443 2568754332211 111222 12356666766789999999999986433222
Q ss_pred cccccccCCcCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHhhcC
Q 006625 533 VEYWQQDKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIFKDH 597 (638)
Q Consensus 533 ~~~WqqdKw~G~F~VeWi~v--kdVPf~~lkHI~Np~NeNKPVt~SR-DGQEIe~e~G~qLLkIF~~~ 597 (638)
. +..-+| ..+.|+-+.. +.|+...+|.. -++.+..-|+.+| --|-|..++-..||++-...
T Consensus 77 ~--~d~Prw-~~VdV~~v~~~~~pvtL~eLK~~-~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~~~ 140 (155)
T 1zce_A 77 A--EGDLKW-DCVDIRAVCDMPQPVSLKDVKAN-PKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGGLA 140 (155)
T ss_dssp S--TTCSSC-EEEEEEEEEEEEEEEEHHHHHHC-GGGTTCHHHHCSSCSEEEECHHHHHHHHHHTTCS
T ss_pred c--CCCCCe-EEEEEEEccccCCcccHHHHhcC-CCcccCeeeeccCCCceeeCHHHHHHHHHhhCCC
Confidence 1 111244 2566666633 44555555532 1233333334343 24677788888888877543
Done!