Query 006626
Match_columns 638
No_of_seqs 173 out of 236
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 12:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09731 Mitofilin: Mitochondr 100.0 4.7E-60 1E-64 520.2 50.4 353 268-633 208-582 (582)
2 KOG1854 Mitochondrial inner me 100.0 1.6E-39 3.4E-44 356.0 36.0 269 363-637 362-653 (657)
3 COG4223 Uncharacterized protei 99.9 7.3E-22 1.6E-26 205.3 20.3 298 294-632 121-419 (422)
4 PF09731 Mitofilin: Mitochondr 94.2 9.8 0.00021 43.4 22.7 62 381-444 321-382 (582)
5 KOG1029 Endocytic adaptor prot 91.7 9.8 0.00021 45.7 18.0 51 499-554 470-520 (1118)
6 KOG0977 Nuclear envelope prote 85.3 37 0.0008 39.6 16.8 151 324-492 200-388 (546)
7 PRK06569 F0F1 ATP synthase sub 83.6 48 0.0011 32.7 16.4 52 330-381 53-105 (155)
8 KOG2391 Vacuolar sorting prote 81.0 87 0.0019 34.8 16.6 64 469-539 291-364 (365)
9 PRK08476 F0F1 ATP synthase sub 79.1 60 0.0013 30.9 16.8 25 329-353 49-73 (141)
10 PRK00409 recombination and DNA 77.5 1E+02 0.0023 37.3 17.6 44 565-614 707-757 (782)
11 KOG2196 Nuclear porin [Nuclear 77.1 1.1E+02 0.0023 32.7 18.9 164 327-491 66-250 (254)
12 PF06705 SF-assemblin: SF-asse 75.6 1E+02 0.0022 31.7 21.9 31 415-445 160-190 (247)
13 KOG0163 Myosin class VI heavy 74.3 66 0.0014 39.2 14.3 32 118-149 526-563 (1259)
14 PF06705 SF-assemblin: SF-asse 73.0 1.2E+02 0.0026 31.3 23.1 34 416-449 132-165 (247)
15 KOG4460 Nuclear pore complex, 71.8 1.4E+02 0.003 35.3 15.7 47 400-447 633-679 (741)
16 KOG0964 Structural maintenance 71.7 2.8E+02 0.0061 35.0 20.5 66 387-458 412-478 (1200)
17 PRK13428 F0F1 ATP synthase sub 71.7 1.8E+02 0.004 32.9 22.0 21 330-350 44-64 (445)
18 PF10146 zf-C4H2: Zinc finger- 70.6 65 0.0014 33.6 12.0 64 417-489 40-103 (230)
19 KOG2072 Translation initiation 69.7 2.9E+02 0.0062 34.3 18.2 7 535-541 932-938 (988)
20 PTZ00266 NIMA-related protein 69.6 64 0.0014 40.3 13.5 9 420-428 506-514 (1021)
21 KOG2391 Vacuolar sorting prote 67.3 1.6E+02 0.0034 32.9 14.4 32 468-503 321-353 (365)
22 TIGR01069 mutS2 MutS2 family p 65.4 1.9E+02 0.0041 35.1 16.0 21 565-585 696-716 (771)
23 KOG0163 Myosin class VI heavy 64.8 3.5E+02 0.0075 33.5 18.0 43 335-377 896-941 (1259)
24 KOG4286 Dystrophin-like protei 64.7 1.1E+02 0.0023 37.4 13.3 152 391-552 193-348 (966)
25 PF11068 YlqD: YlqD protein; 64.5 76 0.0016 30.5 10.2 31 414-444 58-88 (131)
26 KOG2668 Flotillins [Intracellu 60.9 2.9E+02 0.0062 31.2 19.8 41 399-444 269-309 (428)
27 KOG0161 Myosin class II heavy 60.4 5.8E+02 0.013 34.6 22.9 37 321-357 957-993 (1930)
28 PRK09174 F0F1 ATP synthase sub 60.1 2E+02 0.0044 29.3 17.8 23 330-352 96-118 (204)
29 CHL00118 atpG ATP synthase CF0 55.9 2E+02 0.0042 27.7 15.6 21 330-350 65-85 (156)
30 KOG1899 LAR transmembrane tyro 55.2 4.6E+02 0.0099 31.8 18.4 100 417-535 218-317 (861)
31 KOG1854 Mitochondrial inner me 55.0 4.5E+02 0.0097 31.6 19.1 58 385-446 403-464 (657)
32 PF09726 Macoilin: Transmembra 53.7 4.8E+02 0.01 31.6 19.1 23 327-350 424-446 (697)
33 KOG0994 Extracellular matrix g 52.1 6.6E+02 0.014 32.7 22.5 17 311-327 1565-1581(1758)
34 PF02841 GBP_C: Guanylate-bind 51.7 3.2E+02 0.0069 28.9 16.6 23 64-86 1-23 (297)
35 PTZ00266 NIMA-related protein 51.6 2.7E+02 0.0059 35.1 14.4 8 420-427 498-505 (1021)
36 PF06637 PV-1: PV-1 protein (P 50.6 3.6E+02 0.0077 30.7 13.7 35 394-433 303-337 (442)
37 KOG1103 Predicted coiled-coil 48.6 4.5E+02 0.0097 29.8 16.9 22 359-380 134-155 (561)
38 PLN03229 acetyl-coenzyme A car 48.6 6E+02 0.013 31.2 20.7 26 516-541 666-691 (762)
39 PF12004 DUF3498: Domain of un 48.0 6 0.00013 45.3 0.0 67 372-438 405-483 (495)
40 PRK04863 mukB cell division pr 46.7 8.3E+02 0.018 32.3 26.0 84 517-605 646-733 (1486)
41 KOG1029 Endocytic adaptor prot 45.6 7E+02 0.015 31.1 17.9 11 269-279 229-239 (1118)
42 TIGR01837 PHA_granule_1 poly(h 45.2 1.9E+02 0.0041 27.1 9.3 58 389-446 55-112 (118)
43 KOG0612 Rho-associated, coiled 44.2 8E+02 0.017 31.9 16.6 12 23-34 219-230 (1317)
44 PTZ00121 MAEBL; Provisional 43.8 9.5E+02 0.021 32.2 23.3 8 431-438 1261-1268(2084)
45 PF13432 TPR_16: Tetratricopep 43.6 76 0.0017 24.8 5.7 53 576-630 1-53 (65)
46 PRK06231 F0F1 ATP synthase sub 42.8 3.8E+02 0.0082 27.2 18.8 21 330-350 91-111 (205)
47 PF07111 HCR: Alpha helical co 42.7 7.2E+02 0.016 30.4 20.0 151 321-491 60-228 (739)
48 PF00038 Filament: Intermediat 42.4 4.2E+02 0.0092 27.7 21.8 62 415-492 247-308 (312)
49 PF12128 DUF3584: Protein of u 42.1 8.5E+02 0.018 31.1 24.2 24 511-534 764-789 (1201)
50 KOG0161 Myosin class II heavy 41.5 1.1E+03 0.024 32.2 23.1 14 415-428 1107-1120(1930)
51 TIGR02284 conserved hypothetic 40.2 1.4E+02 0.0031 28.4 7.9 33 520-552 40-73 (139)
52 PF09726 Macoilin: Transmembra 39.1 7.9E+02 0.017 29.8 21.2 20 429-448 593-612 (697)
53 CHL00019 atpF ATP synthase CF0 38.9 3.9E+02 0.0085 26.3 19.7 21 330-350 67-87 (184)
54 PF09730 BicD: Microtubule-ass 38.5 8.3E+02 0.018 29.9 16.8 55 389-459 643-697 (717)
55 PRK13454 F0F1 ATP synthase sub 38.4 4.1E+02 0.0089 26.4 17.0 21 330-350 74-94 (181)
56 PF11932 DUF3450: Protein of u 38.3 4.7E+02 0.01 27.0 17.2 17 466-482 111-127 (251)
57 PRK06568 F0F1 ATP synthase sub 37.8 4.1E+02 0.0089 26.2 15.6 21 330-350 47-67 (154)
58 PRK00409 recombination and DNA 37.5 8.5E+02 0.018 29.8 16.5 41 364-404 548-588 (782)
59 PF15556 Zwint: ZW10 interacto 37.5 5.2E+02 0.011 27.3 21.1 86 368-458 95-183 (252)
60 PF15070 GOLGA2L5: Putative go 36.7 8.1E+02 0.018 29.3 18.3 18 333-350 92-109 (617)
61 PRK12704 phosphodiesterase; Pr 35.9 7.6E+02 0.017 28.8 19.2 12 422-433 137-148 (520)
62 PRK13455 F0F1 ATP synthase sub 35.8 4.4E+02 0.0095 25.9 19.3 21 330-350 70-90 (184)
63 KOG0971 Microtubule-associated 35.7 1E+03 0.022 30.2 18.1 137 333-488 270-420 (1243)
64 KOG0579 Ste20-like serine/thre 35.1 9.7E+02 0.021 29.7 24.1 49 367-415 837-889 (1187)
65 PRK08475 F0F1 ATP synthase sub 35.0 4.4E+02 0.0096 25.8 15.8 21 330-350 65-85 (167)
66 PF11932 DUF3450: Protein of u 34.5 5.3E+02 0.012 26.6 16.9 13 423-435 127-139 (251)
67 PF00430 ATP-synt_B: ATP synth 33.8 3.6E+02 0.0077 24.3 10.5 22 329-350 41-62 (132)
68 COG4026 Uncharacterized protei 33.4 6.3E+02 0.014 27.1 13.0 18 269-286 29-46 (290)
69 COG3118 Thioredoxin domain-con 33.2 2.1E+02 0.0045 31.4 8.5 103 503-621 95-212 (304)
70 PRK09174 F0F1 ATP synthase sub 32.8 5.5E+02 0.012 26.2 16.5 12 418-429 155-166 (204)
71 PRK14471 F0F1 ATP synthase sub 32.6 4.6E+02 0.0099 25.2 17.1 21 330-350 51-71 (164)
72 PF07721 TPR_4: Tetratricopept 32.6 64 0.0014 22.0 3.2 23 574-596 3-25 (26)
73 KOG0577 Serine/threonine prote 32.4 3E+02 0.0065 33.4 10.2 34 363-396 824-860 (948)
74 PF05667 DUF812: Protein of un 32.3 8.8E+02 0.019 28.9 14.1 107 366-490 323-435 (594)
75 PF14559 TPR_19: Tetratricopep 32.2 89 0.0019 24.4 4.4 36 569-605 22-57 (68)
76 PF15070 GOLGA2L5: Putative go 31.8 8.2E+02 0.018 29.3 13.8 16 434-449 164-179 (617)
77 PRK13460 F0F1 ATP synthase sub 31.5 5E+02 0.011 25.3 17.8 21 330-350 59-79 (173)
78 TIGR03504 FimV_Cterm FimV C-te 31.3 80 0.0017 24.9 3.9 26 576-601 3-28 (44)
79 KOG0977 Nuclear envelope prote 31.2 9.6E+02 0.021 28.5 19.1 122 502-627 250-377 (546)
80 KOG2891 Surface glycoprotein [ 31.0 7.6E+02 0.016 27.3 15.8 111 322-441 324-437 (445)
81 PF07888 CALCOCO1: Calcium bin 30.8 9.7E+02 0.021 28.4 20.1 29 417-445 397-425 (546)
82 TIGR03319 YmdA_YtgF conserved 29.7 9.5E+02 0.021 28.0 19.1 11 423-433 132-142 (514)
83 PRK14472 F0F1 ATP synthase sub 29.5 5.4E+02 0.012 25.1 19.5 21 330-350 61-81 (175)
84 PRK15363 pathogenicity island 28.6 1.6E+02 0.0036 29.1 6.4 70 566-637 28-98 (157)
85 KOG1265 Phospholipase C [Lipid 28.1 5.3E+02 0.011 32.5 11.4 92 329-432 1093-1184(1189)
86 PRK14474 F0F1 ATP synthase sub 27.9 7.2E+02 0.016 26.0 19.2 21 330-350 48-68 (250)
87 PRK12704 phosphodiesterase; Pr 27.8 1E+03 0.022 27.7 18.2 10 482-491 232-241 (520)
88 PRK10780 periplasmic chaperone 27.7 5.7E+02 0.012 24.8 12.0 107 315-439 26-132 (165)
89 PRK06568 F0F1 ATP synthase sub 27.3 6.2E+02 0.013 25.0 16.9 25 418-445 106-130 (154)
90 KOG2072 Translation initiation 26.8 1.4E+03 0.03 28.9 15.6 26 417-442 671-696 (988)
91 PF15450 DUF4631: Domain of un 26.4 1.1E+03 0.025 27.8 18.7 51 399-449 224-284 (531)
92 PF13428 TPR_14: Tetratricopep 26.2 72 0.0016 23.9 2.8 29 573-601 2-30 (44)
93 PF12072 DUF3552: Domain of un 25.9 6.9E+02 0.015 25.1 15.8 8 298-305 13-20 (201)
94 KOG3054 Uncharacterized conser 25.5 8.6E+02 0.019 26.4 11.2 18 509-526 208-225 (299)
95 TIGR02795 tol_pal_ybgF tol-pal 25.4 1.9E+02 0.0041 24.3 5.6 57 572-629 39-97 (119)
96 PRK13453 F0F1 ATP synthase sub 24.6 6.7E+02 0.015 24.5 19.3 22 329-350 60-81 (173)
97 PF10168 Nup88: Nuclear pore c 24.6 1.3E+03 0.029 28.0 15.5 119 309-448 539-657 (717)
98 PRK05759 F0F1 ATP synthase sub 23.8 6.2E+02 0.013 23.8 17.1 21 330-350 47-67 (156)
99 PF10079 DUF2317: Uncharacteri 23.8 6.9E+02 0.015 29.3 11.3 13 496-508 519-531 (542)
100 PF05597 Phasin: Poly(hydroxya 23.6 6.8E+02 0.015 24.2 14.0 84 308-398 20-103 (132)
101 PF05633 DUF793: Protein of un 23.5 3.5E+02 0.0077 30.6 8.5 26 458-486 349-374 (389)
102 PRK13454 F0F1 ATP synthase sub 22.9 7.5E+02 0.016 24.5 16.4 15 417-431 132-146 (181)
103 KOG1118 Lysophosphatidic acid 22.3 1.1E+03 0.025 26.3 13.5 49 302-350 100-148 (366)
104 PTZ00121 MAEBL; Provisional 22.2 2.1E+03 0.045 29.4 21.5 11 288-298 1092-1102(2084)
105 PRK14475 F0F1 ATP synthase sub 21.9 7.4E+02 0.016 24.0 19.7 21 330-350 53-73 (167)
106 TIGR02552 LcrH_SycD type III s 21.8 2.3E+02 0.0051 24.9 5.7 52 569-620 82-133 (135)
107 KOG0933 Structural maintenance 21.7 1.8E+03 0.039 28.5 23.1 272 290-576 768-1117(1174)
108 KOG4643 Uncharacterized coiled 21.2 1.8E+03 0.04 28.4 20.8 22 416-437 537-558 (1195)
109 KOG4673 Transcription factor T 21.0 1.6E+03 0.036 27.7 18.7 22 520-541 616-638 (961)
110 PRK10361 DNA recombination pro 20.8 1.4E+03 0.03 26.7 19.4 7 478-484 144-150 (475)
111 PRK15359 type III secretion sy 20.8 3.4E+02 0.0073 25.3 6.7 66 568-635 54-119 (144)
112 TIGR03321 alt_F1F0_F0_B altern 20.7 9.5E+02 0.02 24.8 17.8 21 330-350 48-68 (246)
113 PF05283 MGC-24: Multi-glycosy 20.7 1.4E+02 0.003 30.5 4.3 19 62-80 163-181 (186)
114 PF13414 TPR_11: TPR repeat; P 20.7 2.8E+02 0.0061 21.7 5.4 58 571-630 2-60 (69)
115 PRK14161 heat shock protein Gr 20.5 8.9E+02 0.019 24.4 10.3 19 302-320 4-22 (178)
116 COG4487 Uncharacterized protei 20.4 1.4E+03 0.03 26.6 19.5 74 368-441 111-186 (438)
117 PRK14473 F0F1 ATP synthase sub 20.2 7.8E+02 0.017 23.6 19.2 22 330-351 51-72 (164)
No 1
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=100.00 E-value=4.7e-60 Score=520.17 Aligned_cols=353 Identities=30% Similarity=0.439 Sum_probs=302.6
Q ss_pred cchhhhhhccccccccCCCcchhhhhhhhhhhhcccc--cCCcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHH
Q 006626 268 PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL--SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE 345 (638)
Q Consensus 268 ~~~l~~~y~l~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~k~~~d~~~AI~aa~k~Qae~Da~~f~eel~~l~~kye 345 (638)
-+.+++.|+..+..+.....+..-.-+.+..++++.+ .+++.++..+...|+.-.+..++++.....+..+.|+++|+
T Consensus 208 ~~~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 208 LPKIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889988776665552111111144556677888 78899999999999999999999999988999999999988
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 346 KELRDSRARELMR-----TEEAAILEKELKRERAKAAATIKS--------LQEKMEEKLRMELEQKENEAESKLKNALEL 412 (638)
Q Consensus 346 keL~d~aA~el~~-----~~~~a~l~~efE~Er~kla~a~K~--------l~e~~EekLr~EL~~qe~E~e~rL~kl~el 412 (638)
..+...+....++ ......|+.+|++++.++...|+. ..+.++++|+++|..|.+|.++++.+
T Consensus 288 e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~---- 363 (582)
T PF09731_consen 288 ELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEK---- 363 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 6565544443332 134578999999999998777631 23446666666666666666666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC-----CChHHHHHHHH
Q 006626 413 AKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----LPIQKEIDTLY 487 (638)
Q Consensus 413 ~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lAa~AL~~Al~~g-----~Pf~~EL~aLk 487 (638)
+|+++|++||.+|+++|++++.+|++|+.++..+++..+.++.+|+||+||.+|++++.+| .||..||.+|+
T Consensus 364 ---~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~ 440 (582)
T PF09731_consen 364 ---EIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALK 440 (582)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999888 99999999999
Q ss_pred HhhcCCCCchhHHHHHhcCchhhhhcCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHhhcceeeecccc--
Q 006626 488 TYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVKEA-- 565 (638)
Q Consensus 488 ~la~gl~~D~LV~aaLsSLP~~Aae~GV~T~aqL~~RF~~Va~~iRraSLVPe~gaGll~hllS~l~S~Llf~p~K~G-- 565 (638)
.++ ++|+||+++|++||+.+.++||+|..+|++||+.|++.||+++|||++++||++|++||++|+|+|++. .|
T Consensus 441 ~~~---~~d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~~~~~-~~~~ 516 (582)
T PF09731_consen 441 ELA---PDDELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLLFRPK-GGEV 516 (582)
T ss_pred HhC---CCChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheeeeecC-CCCC
Confidence 998 589999999999999999999999999999999999999999999777789999999999999999543 23
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006626 566 DQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYAT 633 (638)
Q Consensus 566 ~~~GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~vL~A~Aa 633 (638)
++.|+|+++||+||++||.+|||+.|+++| |+|+|| |+.+|.|||++||+|||++|++++|.+||+
T Consensus 517 ~~~~~d~~~ilarae~~l~~gdL~~A~~~~-~~L~g~-~~~~a~dW~~~ar~~le~~q~~~~l~a~a~ 582 (582)
T PF09731_consen 517 DPEGDDVESILARAEYYLERGDLDKAAREL-NQLKGW-ARKLAADWLKEARRRLEVEQALEVLEAHAA 582 (582)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999 799999 999999999999999999999999999985
No 2
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.6e-39 Score=356.03 Aligned_cols=269 Identities=22% Similarity=0.314 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 006626 363 AILEKELKRERAKAAATIKSLQEKMEEKLRMELEQ----KE----NEAESKLKN----ALELAKAEIAASIAREKVAQIE 430 (638)
Q Consensus 363 a~l~~efE~Er~kla~a~K~l~e~~EekLr~EL~~----qe----~E~e~rL~k----l~el~kaEi~~~VeqER~~rL~ 430 (638)
+.+.++++..|.+++.....+-+.+..++++||.. |. ......+.. +.--++.++.++|.+||+-+-.
T Consensus 362 ~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~ 441 (657)
T KOG1854|consen 362 AQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLHSS 441 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHh
Confidence 55667777777777777655555555555555533 32 111111211 1112456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh------CCCChHHHHHHHHHhhcCCCCchhHHHHHh
Q 006626 431 KMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALS------RGLPIQKEIDTLYTYLDGIEKDSVLDLVLS 504 (638)
Q Consensus 431 kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lAa~AL~~Al~------~g~Pf~~EL~aLk~la~gl~~D~LV~aaLs 504 (638)
+++-+-.+|.+++.++-.+......+...|+||++|.+|.+.+. +..|+...+.+++..+ ++|+||.+++.
T Consensus 442 qvg~aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~s~~~g~~e~r~~pLg~~vn~~k~~~---~~delv~a~~~ 518 (657)
T KOG1854|consen 442 QVGKALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKDSLNKGHYEMRRHPLGKHVNALKEVT---KDDELVAAALD 518 (657)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccCchhHHHHHHhccC---CcHHHHHHHHH
Confidence 99999999999999988888888888888889999999998884 4579999999998888 68999999999
Q ss_pred cCchhhhhcCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHhhcceeeeccccC-----CCCCCHHHHHHHH
Q 006626 505 SLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVKEAD-----QANDGIESVICRV 579 (638)
Q Consensus 505 SLP~~Aae~GV~T~aqL~~RF~~Va~~iRraSLVPe~gaGll~hllS~l~S~Llf~p~K~G~-----~~GdDveSILARA 579 (638)
+||+.+..+||||..+|++||+.|.+.+|+++|||++||++..|++| ++|+|+|+|.+.|. |...|++.||+||
T Consensus 519 ~ipk~~~~rgiysee~L~~RF~~l~ki~rr~a~l~e~gg~lg~yf~s-l~Slfl~~~~q~g~~~~~~p~~~d~~~iLsrA 597 (657)
T KOG1854|consen 519 SIPKEADTRGIYSEEDLRNRFNTLSKIARRTALLPEEGGFLGQYFLS-LQSLFLLSPQQLGNPVFLDPNITDTYKILSRA 597 (657)
T ss_pred hcccccccCCCCCHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHH-hhhheeecHhhcCCCccCCcccccHHHHHHHH
Confidence 99999999999999999999999999999999999997555556666 99999997655444 4677899999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006626 580 ESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCLSI 637 (638)
Q Consensus 580 E~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~vL~A~Aaa~sL 637 (638)
+|||..|||+.|+|+| |+|+|| ||.||.|||++||++||++|++++|.|||+++|+
T Consensus 598 ~~~~~~gdl~~Avr~v-~lLkG~-pr~va~dWi~daRr~lE~qql~eiL~AhAa~ssi 653 (657)
T KOG1854|consen 598 RYHLLKGDLDDAVRVV-NLLKGW-PRKVARDWIKDARRRLETQQLVEILKAHAAASSI 653 (657)
T ss_pred HHHHhcccHHHHHHHH-HHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999 899999 9999999999999999999999999999999987
No 3
>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.89 E-value=7.3e-22 Score=205.31 Aligned_cols=298 Identities=22% Similarity=0.202 Sum_probs=207.4
Q ss_pred hhhhhhhcccccCCcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 006626 294 NVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEE-AAILEKELKRE 372 (638)
Q Consensus 294 ~~~~~~~~~~~~~~~k~~~d~~~AI~aa~k~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~-~a~l~~efE~E 372 (638)
-..++++..+|. +|.|.|-..++++++...-+.---.....|...|+.+.... +. ...... ++-...-+|+.
T Consensus 121 ~~~~g~iaAgi~-gg~IAla~ag~Lq~ag~v~apg~~~a~~~e~a~l~seiagl-k~-----~g~a~~~Aapd~s~leqr 193 (422)
T COG4223 121 AGGEGVIAAGID-GGLIALAGAGALQYAGRVPAPGVGDAGLLEIAFLKSEIAGL-KW-----FGPANAPAAPDSSGLEQR 193 (422)
T ss_pred cCcccceecccc-cceeeccCcchhhhccccCCCCCccchhHHHHHHHHHHHHH-HH-----hccccCccCcccchhHHh
Confidence 347788888888 89899988899999877766333333466666666665432 11 110000 11111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006626 373 RAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEE 452 (638)
Q Consensus 373 r~kla~a~K~l~e~~EekLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~ 452 (638)
...+..+... - --+++..+. .=..|.++. ..+-.||...+....+|+.+|.+|+..+..-++.
T Consensus 194 iaal~aa~~~---p-----~p~v~al~~-avtal~~~~--------salp~ersta~Aa~ael~gRiaalEqs~ne~ad~ 256 (422)
T COG4223 194 IAALEAASAE---P-----APRVKALEV-AVTALLPLE--------SALPAERSTALAAVAELNGRIAALEQSLNEPADD 256 (422)
T ss_pred hhhhhhhhcC---C-----CCchhHHHH-HHHhccchh--------hccchhhhhHHHHHHHHhhhHHHHHHHhccchhH
Confidence 2222111100 0 000110000 001122211 2222335555555556666666665554332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhcCCCCchhHHHHHhcCchhhhhcCCCCHHHHHHHHHHHHHHH
Q 006626 453 ARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTL 532 (638)
Q Consensus 453 ~rqs~~vhkL~lAa~AL~~Al~~g~Pf~~EL~aLk~la~gl~~D~LV~aaLsSLP~~Aae~GV~T~aqL~~RF~~Va~~i 532 (638)
+.- .+++++.+|+.++++|.||..||+.|..+++ +|+- |.+|.+.+ .+||||+.+|..+|..|+..+
T Consensus 257 iea-----A~aiaatalKtAidrggPF~aELdtL~~VaP---~dP~----l~~L~~~A-~tGvPTRaeL~~qF~~~Anam 323 (422)
T COG4223 257 IEA-----ALAIAATALKTAIDRGGPFLAELDTLESVAP---GDPA----LAALRPYA-ATGVPTRAELATQFGAVANAM 323 (422)
T ss_pred HHH-----HHHHHHHHHHHHHhcCCCchHHHhhHhhhCC---CChh----hHHhhHHH-hcCCCcHHHHHHHHHHHHHHH
Confidence 211 3567889999999999999999999999994 6774 47888875 799999999999999999999
Q ss_pred hhhccCCCCCCCHHHHHHHHHhhcceeeeccccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHH
Q 006626 533 RHFSLIPPGGGGILTHSLAHIASWLKVHQVKEADQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWV 612 (638)
Q Consensus 533 RraSLVPe~gaGll~hllS~l~S~Llf~p~K~G~~~GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL 612 (638)
-.++.-|+-++|||.++++..+|++.|||. |+++|.+++.+++|+|..|++|||+.|+-|| |+|+.. +|.+..||.
T Consensus 324 vsA~~~pd~nagl~~rL~~Sa~slVsVRpV--GsveG~t~~a~iARmEa~L~~GDl~gA~~ew-d~Lpea-aKaa~a~f~ 399 (422)
T COG4223 324 VSASNNPDPNAGLFDRLRSSASSLVSVRPV--GSVEGSTPDAMIARMEAALDNGDLEGAVLEW-DSLPEA-AKAASADFA 399 (422)
T ss_pred HHhccCCCCCchHHHHHHHHHhcceeeeec--cccCCCCcchHHHHHHHHHhccchHhHHHhh-ccCcHH-HHHhhhhHH
Confidence 998887776689999999999999999665 8999999999999999999999999999999 799998 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006626 613 RRARNRAITEQGLTFLQSYA 632 (638)
Q Consensus 613 ~dAR~RLEveQAl~vL~A~A 632 (638)
..+.+|++++..++.+.+.+
T Consensus 400 ~~l~aRieve~~V~a~va~a 419 (422)
T COG4223 400 VKLKARIEVETLVDALVADA 419 (422)
T ss_pred HHHHhhhhHHHHHHHHHhhh
Confidence 99999999999999887765
No 4
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=94.18 E-value=9.8 Score=43.44 Aligned_cols=62 Identities=34% Similarity=0.471 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 381 KSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCM 444 (638)
Q Consensus 381 K~l~e~~EekLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~ 444 (638)
..+++.++++|+.||+++....+.+|.+....+..|+.....++-...+++ |-+.++..|..
T Consensus 321 ~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~--Er~~~~~~l~~ 382 (582)
T PF09731_consen 321 EELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQ--ERNGRLAKLAE 382 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 357888999999999999999999998776666666665555444433332 34445555533
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=9.8 Score=45.72 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHHhcCchhhhhcCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHh
Q 006626 499 LDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIA 554 (638)
Q Consensus 499 V~aaLsSLP~~Aae~GV~T~aqL~~RF~~Va~~iRraSLVPe~gaGll~hllS~l~ 554 (638)
...+|+.+.... +.-+.+..+|..|.......+.+ |+|+- -.|.|=+-...
T Consensus 470 ~kt~ie~~~~q~-e~~isei~qlqarikE~q~kl~~--l~~Ek--q~l~~qlkq~q 520 (1118)
T KOG1029|consen 470 QKTEIEEVTKQR-ELMISEIDQLQARIKELQEKLQK--LAPEK--QELNHQLKQKQ 520 (1118)
T ss_pred HHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHh--hhhHH--HHHHHHHHHhh
Confidence 344555555543 45577788999998877776653 45665 45665444433
No 6
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.31 E-value=37 Score=39.60 Aligned_cols=151 Identities=18% Similarity=0.236 Sum_probs=77.2
Q ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 006626 324 RQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSL--------QEKMEEKLRMEL 395 (638)
Q Consensus 324 ~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~~efE~Er~kla~a~K~l--------~e~~EekLr~EL 395 (638)
.-.+.-...+.++|..++..|.+++++.++. .++.--...+.+|+.|-+.....|+.. .+.+|...+.+|
T Consensus 200 ~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~--~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI 277 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLKRIHKQEIEEERRK--ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKI 277 (546)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHH--HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344556777899999999999999885554 111111345566665544444333311 333455555544
Q ss_pred HHHH--------------HHHHH----------HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 396 EQKE--------------NEAES----------KLKNALE------LAKAEIAASIAREKVAQIEKMAEANLHINALCMA 445 (638)
Q Consensus 396 ~~qe--------------~E~e~----------rL~kl~e------l~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~A 445 (638)
.+.. +|..+ +|..|+. .....|.-+++.++-.+=..|++....|..|
T Consensus 278 ~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~m--- 354 (546)
T KOG0977|consen 278 QEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKM--- 354 (546)
T ss_pred HHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH---
Confidence 3321 11111 1111100 0012234444444444444444444444333
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhcC
Q 006626 446 FYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDG 492 (638)
Q Consensus 446 v~arsE~~rqs~~vhkL~lAa~AL~~Al~~g~Pf~~EL~aLk~la~g 492 (638)
|.++...+.. |+..++....|..||.+.+++..|
T Consensus 355 ---Reec~~l~~E----------lq~LlD~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 355 ---REECQQLSVE----------LQKLLDTKISLDAEIAAYRKLLEG 388 (546)
T ss_pred ---HHHHHHHHHH----------HHHhhchHhHHHhHHHHHHHHhcc
Confidence 3334333333 455567778899999999999876
No 7
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=83.57 E-value=48 Score=32.73 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRDSRAR-ELMRTEEAAILEKELKRERAKAAATIK 381 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d~aA~-el~~~~~~a~l~~efE~Er~kla~a~K 381 (638)
|...+++.+.++.+|+.+|.+.++. .-++.+..+.+..+++.+|.++.+.++
T Consensus 53 Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~ 105 (155)
T PRK06569 53 ADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK 105 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556788899999999999995555 234444467777788888887766654
No 8
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.99 E-value=87 Score=34.77 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=34.1
Q ss_pred HHHHHhCCCChHHHHHHHHHhhcCCCCchhHHHHHhcCchhhhhcCCCCHHHHHHHHH----------HHHHHHhhhccC
Q 006626 469 LEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFD----------ALKGTLRHFSLI 538 (638)
Q Consensus 469 L~~Al~~g~Pf~~EL~aLk~la~gl~~D~LV~aaLsSLP~~Aae~GV~T~aqL~~RF~----------~Va~~iRraSLV 538 (638)
+..++....|+.+.+-. -+| .|.-+.-+|-+|.+. ..+||.+.++--.--+ .....||+.+.+
T Consensus 291 ~D~~~~~~~~l~kq~l~--~~A----~d~aieD~i~~L~~~-~r~G~i~l~~yLr~VR~lsReQF~~rat~qk~r~~~~l 363 (365)
T KOG2391|consen 291 IDEAIECTAPLYKQILE--CYA----LDLAIEDAIYSLGKS-LRDGVIDLDQYLRHVRLLSREQFILRATMQKCRQTAGL 363 (365)
T ss_pred chhhhhccchHHHHHHH--hhh----hhhHHHHHHHHHHHH-HhcCeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444445555543322 122 355566666777664 4788888875433333 344456665554
Q ss_pred C
Q 006626 539 P 539 (638)
Q Consensus 539 P 539 (638)
+
T Consensus 364 ~ 364 (365)
T KOG2391|consen 364 A 364 (365)
T ss_pred C
Confidence 3
No 9
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=79.11 E-value=60 Score=30.89 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 329 DGRAFAEEKRALKEKYEKELRDSRA 353 (638)
Q Consensus 329 Da~~f~eel~~l~~kyekeL~d~aA 353 (638)
++..++++...++++|+..|.+.++
T Consensus 49 ~A~~~~~ea~~~~~e~e~~l~~Ar~ 73 (141)
T PRK08476 49 KVKTNSSDVSEIEHEIETILKNARE 73 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888888888888777443
No 10
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=77.50 E-value=1e+02 Score=37.25 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=28.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHhcCCChh---hhHHHHHHHHH
Q 006626 565 ADQANDGIESVICRVESYLREGKLAEAA----DALEEGVRGSQ---AEEIVFDWVRR 614 (638)
Q Consensus 565 G~~~GdDveSILARAE~~L~~GDLd~Aa----rELEn~L~G~~---Ar~lA~DWL~d 614 (638)
.+.-|..++..+...+.|| +.|+ +++ --..|-| =|....+||+.
T Consensus 707 lDL~G~~~eeA~~~l~~fl-----~~a~~~g~~~v-~IIHGkGtG~Lr~~v~~~L~~ 757 (782)
T PRK00409 707 LDLRGMRYEEALERLDKYL-----DDALLAGYGEV-LIIHGKGTGKLRKGVQEFLKK 757 (782)
T ss_pred EECCCCCHHHHHHHHHHHH-----HHHHHcCCCEE-EEEcCCChhHHHHHHHHHHcC
Confidence 3556888988888888884 4553 233 2445543 36677778764
No 11
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=77.09 E-value=1.1e+02 Score=32.67 Aligned_cols=164 Identities=13% Similarity=0.131 Sum_probs=90.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHH
Q 006626 327 ELDGRAFAEEKRALKEKYEKELRDSRARELM-RTEEAAILEKELKRERAKAAATIKSL--QEKMEEKLRMEL---EQKEN 400 (638)
Q Consensus 327 e~Da~~f~eel~~l~~kyekeL~d~aA~el~-~~~~~a~l~~efE~Er~kla~a~K~l--~e~~EekLr~EL---~~qe~ 400 (638)
-.+..++-..|+.+..+|..+|-+ .++=.. +.-+...|++.+=.-=+++...|... .+-...||-.+| ..|+.
T Consensus 66 ~~~s~l~~~~LeeliNkWs~el~~-Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ 144 (254)
T KOG2196|consen 66 PAPSSLTYKTLEELINKWSLELEE-QERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQ 144 (254)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999888 444333 45566889887766555665555421 222333455554 44566
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHH---HHHHHHHHHH-
Q 006626 401 EAESKLKNALELAKA----EIAASIAREKVAQIEKMAEANLHINALCMAFYA-------RSEEARK---SYFAHKLALG- 465 (638)
Q Consensus 401 E~e~rL~kl~el~ka----Ei~~~VeqER~~rL~kL~EL~~~lqaL~~Av~a-------rsE~~rq---s~~vhkL~lA- 465 (638)
|.|.-|..++..... -+......||+.--.-.+.+..+|+.|..-+.. .+..... +.++-+...|
T Consensus 145 ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah 224 (254)
T KOG2196|consen 145 ELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAH 224 (254)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHH
Confidence 666666666554432 123445555554444444444444444332111 1111111 2233333322
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHhhc
Q 006626 466 ALALEDALSRGLPIQKEIDTLYTYLD 491 (638)
Q Consensus 466 a~AL~~Al~~g~Pf~~EL~aLk~la~ 491 (638)
..+|+-.-++...+.+-++.|+++.+
T Consensus 225 ~~sLqwl~d~st~~e~k~d~i~K~~~ 250 (254)
T KOG2196|consen 225 MDSLQWLDDNSTQLEKKLDKIKKLKD 250 (254)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 34555555667777888888888763
No 12
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=75.65 E-value=1e+02 Score=31.74 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 415 AEIAASIAREKVAQIEKMAEANLHINALCMA 445 (638)
Q Consensus 415 aEi~~~VeqER~~rL~kL~EL~~~lqaL~~A 445 (638)
..+..+|..||..|-..+.++...+..+...
T Consensus 160 ~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 160 NRLQEKIEKEKNTRESKLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777666666666666665543
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=74.33 E-value=66 Score=39.17 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=17.9
Q ss_pred cccCCCCCCccchhHH------HhhhccccCCCCCCcc
Q 006626 118 VFSHSDEEPKTSISAV------EQAMQSVEPHKDIRQP 149 (638)
Q Consensus 118 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 149 (638)
+|.--||+.+.+.+.+ .+..++-|-..|+|.-
T Consensus 526 ifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRk 563 (1259)
T KOG0163|consen 526 IFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRK 563 (1259)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCch
Confidence 4555566666664444 3444555556666654
No 14
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=73.02 E-value=1.2e+02 Score=31.27 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006626 416 EIAASIAREKVAQIEKMAEANLHINALCMAFYAR 449 (638)
Q Consensus 416 Ei~~~VeqER~~rL~kL~EL~~~lqaL~~Av~ar 449 (638)
++...+..||..|.++=..+-.+|..+..-+..+
T Consensus 132 ~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~ 165 (247)
T PF06705_consen 132 ELQEAFENERNEREEREENILKRLEEEENRLQEK 165 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888777777777777665554443
No 15
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.79 E-value=1.4e+02 Score=35.28 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 400 NEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFY 447 (638)
Q Consensus 400 ~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~ 447 (638)
+-..+++++|..++.+++..-+..||. +...|.-++..++.|..++.
T Consensus 633 e~L~~~~~~L~~~~~~~lp~l~~AErd-Fk~Elq~~~~~~~~L~~~iE 679 (741)
T KOG4460|consen 633 EDLMNRMKKLLHSFHSELPVLSDAERD-FKKELQLIPDQLRHLGNAIE 679 (741)
T ss_pred HHHHHHHHHHHhcccccCCcchhHHHH-HHHHHHHhHHHHHHHHHHHH
Confidence 345566777766665666666556653 33344455555555555543
No 16
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.67 E-value=2.8e+02 Score=35.00 Aligned_cols=66 Identities=27% Similarity=0.286 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHH
Q 006626 387 MEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHIN-ALCMAFYARSEEARKSYF 458 (638)
Q Consensus 387 ~EekLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lq-aL~~Av~arsE~~rqs~~ 458 (638)
.++.|+.|+...+.+.+..+++.+++ ...|. |-.+|+..++.....++ .+...+..|.+..|.=..
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l-~~si~-----e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKEL-ESSIN-----ETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666666665544 12233 33566666654443333 344445555544444333
No 17
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=71.65 E-value=1.8e+02 Score=32.86 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+...++++..++++|++.|.+
T Consensus 44 Ae~a~~ea~~~~~~~e~~L~~ 64 (445)
T PRK13428 44 SATAADRLAEADQAHTKAVED 64 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444578888889999988887
No 18
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.58 E-value=65 Score=33.60 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh
Q 006626 417 IAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTY 489 (638)
Q Consensus 417 i~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lAa~AL~~Al~~g~Pf~~EL~aLk~l 489 (638)
..+.+.+||..+++.|-..+.-++.|+..+.....+-++.... +.-+.. --.|+.++++.++.-
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~------i~r~~e---ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK------IQRLYE---EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999976644433332220 011222 234778888888776
No 19
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=69.68 E-value=2.9e+02 Score=34.29 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.4
Q ss_pred hccCCCC
Q 006626 535 FSLIPPG 541 (638)
Q Consensus 535 aSLVPe~ 541 (638)
..-+|++
T Consensus 932 ~~rv~p~ 938 (988)
T KOG2072|consen 932 GDRVPPR 938 (988)
T ss_pred CCCCCCC
Confidence 4445554
No 20
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=69.59 E-value=64 Score=40.35 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 006626 420 SIAREKVAQ 428 (638)
Q Consensus 420 ~VeqER~~r 428 (638)
+.++||..+
T Consensus 506 r~e~er~~r 514 (1021)
T PTZ00266 506 RLERERVDR 514 (1021)
T ss_pred HHHHHHHHH
Confidence 334444433
No 21
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.30 E-value=1.6e+02 Score=32.85 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=21.5
Q ss_pred HHHHHHhCC-CChHHHHHHHHHhhcCCCCchhHHHHH
Q 006626 468 ALEDALSRG-LPIQKEIDTLYTYLDGIEKDSVLDLVL 503 (638)
Q Consensus 468 AL~~Al~~g-~Pf~~EL~aLk~la~gl~~D~LV~aaL 503 (638)
.|..++.+| .+|..-|+.++.++. ..|+.-++
T Consensus 321 ~L~~~~r~G~i~l~~yLr~VR~lsR----eQF~~rat 353 (365)
T KOG2391|consen 321 SLGKSLRDGVIDLDQYLRHVRLLSR----EQFILRAT 353 (365)
T ss_pred HHHHHHhcCeeeHHHHHHHHHHHHH----HHHHHHHH
Confidence 455554444 699999999999984 45554443
No 22
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.41 E-value=1.9e+02 Score=35.14 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=16.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 006626 565 ADQANDGIESVICRVESYLRE 585 (638)
Q Consensus 565 G~~~GdDveSILARAE~~L~~ 585 (638)
-+.-|..++..+...+.||..
T Consensus 696 ldl~G~~~~eA~~~l~~~ld~ 716 (771)
T TIGR01069 696 LDLRGQRSEEALDRLEKFLND 716 (771)
T ss_pred EECCCCCHHHHHHHHHHHHHH
Confidence 455688888888888888765
No 23
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.83 E-value=3.5e+02 Score=33.50 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 006626 335 EEKRALKEKYEKELRDSRARELMRTEEAA---ILEKELKRERAKAA 377 (638)
Q Consensus 335 eel~~l~~kyekeL~d~aA~el~~~~~~a---~l~~efE~Er~kla 377 (638)
.+..++...|++-+++-..++--+.++.. ..++..|.||++-.
T Consensus 896 ~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrE 941 (1259)
T KOG0163|consen 896 SEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRRE 941 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455566666666554433333333332 23356666666543
No 24
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=64.68 E-value=1.1e+02 Score=37.42 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006626 391 LRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALE 470 (638)
Q Consensus 391 Lr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lAa~AL~ 470 (638)
++.-|..+..+....|++|..-. ... .+--..-|++|.|+...+..|.--+..-.........|-+|.+ ..|.
T Consensus 193 ~~r~~~kqa~~~~~~we~l~~~~----~~w-~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~i--dsl~ 265 (966)
T KOG4286|consen 193 VTRLLRKQAEEVNTEWEKLNLHS----ADW-QRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLI--DSLQ 265 (966)
T ss_pred HHHHHHHHHHHHHHHHHHhCcch----hhH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHH--hHHH
Confidence 33444445566666776664211 000 0000112445555555555443332222222222233333333 5666
Q ss_pred HHHhCCCChHHHHHHHHHhhcCCCCchhHHHHHhcCchhhhhcCCCCHHHHHHHHHHHHHHH--hhhccCC--CCCCCHH
Q 006626 471 DALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTL--RHFSLIP--PGGGGIL 546 (638)
Q Consensus 471 ~Al~~g~Pf~~EL~aLk~la~gl~~D~LV~aaLsSLP~~Aae~GV~T~aqL~~RF~~Va~~i--RraSLVP--e~gaGll 546 (638)
+.+..-.-|..|+.-++...+.+ +|---..+...|-.. ..---+..+|.-||..+...+ |-..|-- .+=|.+-
T Consensus 266 ~h~e~~~~~~~ei~p~~~~v~~v-ndla~ql~~~d~~ls--~~~~~~le~~n~rwk~Lq~SV~~rl~qlrna~~dfgp~s 342 (966)
T KOG4286|consen 266 DHLEKVKALRGEIAPLKENVSHV-NDLARQLTTLDIQLS--PYNLSTLEDLNTRWKLLQVSVPDRLTQLRNAHRDFGPIS 342 (966)
T ss_pred HHHHHHHHHHhhcchHhhchhhH-HHHHHHhhhcccCCC--hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 66655556666666665544211 222122222222222 222356789999998777654 3333321 1223455
Q ss_pred HHHHHH
Q 006626 547 THSLAH 552 (638)
Q Consensus 547 ~hllS~ 552 (638)
.|++|.
T Consensus 343 qhflsq 348 (966)
T KOG4286|consen 343 QHFLSQ 348 (966)
T ss_pred HHHhhc
Confidence 677775
No 25
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=64.49 E-value=76 Score=30.52 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 414 KAEIAASIAREKVAQIEKMAEANLHINALCM 444 (638)
Q Consensus 414 kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~ 444 (638)
...+..++++||..|+++...+..++++++.
T Consensus 58 ~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 58 IQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999888843
No 26
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=60.92 E-value=2.9e+02 Score=31.21 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 399 ENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCM 444 (638)
Q Consensus 399 e~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~ 444 (638)
+.|..++-++|+.+.+.+-.+. +-|+.+|++.|..+--++.
T Consensus 269 eqEiqr~~~el~A~vR~paeAe-----~~r~~klaEAnk~~~~~qa 309 (428)
T KOG2668|consen 269 EQEIQRRVEELNATVRTPAEAE-----VERETKLAEANKELYNKQA 309 (428)
T ss_pred HHHHHHHHHHHHHHhCChhHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 5666667777776666664444 5677888888887655543
No 27
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.43 E-value=5.8e+02 Score=34.59 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=25.0
Q ss_pred HHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 321 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELM 357 (638)
Q Consensus 321 a~k~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~ 357 (638)
.++..++....-+.+++..+.+.+.+..+.+..-|..
T Consensus 957 ~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~ 993 (1930)
T KOG0161|consen 957 LEKNAAENKLKNLEEEINSLDENISKLSKEKKELEER 993 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677788888888888777776555443
No 28
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=60.08 E-value=2e+02 Score=29.25 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRDSR 352 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d~a 352 (638)
+...+.+.+.+..+|+++|.+.+
T Consensus 96 Ae~~k~eAe~~~~~ye~~L~~Ar 118 (204)
T PRK09174 96 AARLKQEADAAVAAYEQELAQAR 118 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777743
No 29
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=55.86 E-value=2e+02 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+.....+...+..+|+..|.+
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~ 85 (156)
T CHL00118 65 ASEILAKANELTKQYEQELSK 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666555
No 30
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.20 E-value=4.6e+02 Score=31.78 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhcCCCCc
Q 006626 417 IAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKD 496 (638)
Q Consensus 417 i~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lAa~AL~~Al~~g~Pf~~EL~aLk~la~gl~~D 496 (638)
.-..|.+||..+--+|..-...|..|.+-+..++.+..+.+.. +...+...|.....-.+.|+... +
T Consensus 218 kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~--------lv~~~~~d~e~~~~rd~~lk~a~-----e 284 (861)
T KOG1899|consen 218 KVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRT--------LVQRLMADGEHKSLRDNTLKNAL-----E 284 (861)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHH--------HHHHHhhcccchhhHHHHHHHHH-----H
Confidence 3456889999999999888888888888877776666665551 22233333444444445665543 1
Q ss_pred hhHHHHHhcCchhhhhcCCCCHHHHHHHHHHHHHHHhhh
Q 006626 497 SVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHF 535 (638)
Q Consensus 497 ~LV~aaLsSLP~~Aae~GV~T~aqL~~RF~~Va~~iRra 535 (638)
.++ .+=. -.++-+.+.-++.++|+.++..++-+
T Consensus 285 slm----~ane--~kdr~ie~lr~~ln~y~k~~~iv~i~ 317 (861)
T KOG1899|consen 285 SLM----RANE--QKDRFIESLRNYLNNYDKNAQIVRIL 317 (861)
T ss_pred HHH----hhch--hhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 221 1111 12444566778899999999887643
No 31
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=55.05 E-value=4.5e+02 Score=31.65 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 385 EKMEEKLRMELEQKE----NEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAF 446 (638)
Q Consensus 385 e~~EekLr~EL~~qe----~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av 446 (638)
...-+.||.-+.+|+ +|-++.|+......++..+.+|. ..|.+|..+...|+....+-
T Consensus 403 ~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~qvg----~aL~rLrgie~aL~~~~~~~ 464 (657)
T KOG1854|consen 403 KAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLHSSQVG----KALSRLRGIEQALQERVRAE 464 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHhHHH----HHHHHHHhHHHHHHHHHHHH
Confidence 334455666665554 44444454333333445555644 37778877777777665553
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.74 E-value=4.8e+02 Score=31.59 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=10.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHH
Q 006626 327 ELDGRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 327 e~Da~~f~eel~~l~~kyekeL~d 350 (638)
+.|...++-+|+..... |.+||.
T Consensus 424 E~dvkkLraeLq~~Rq~-E~ELRs 446 (697)
T PF09726_consen 424 EADVKKLRAELQSSRQS-EQELRS 446 (697)
T ss_pred HHHHHHHHHHHHhhhhh-HHHHHH
Confidence 44444445555544332 444444
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.06 E-value=6.6e+02 Score=32.70 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 006626 311 VLDFLQAIHAAEQRQAE 327 (638)
Q Consensus 311 ~~d~~~AI~aa~k~Qae 327 (638)
+.++.+|+.+|.+.|-.
T Consensus 1565 ae~V~eaL~~Ad~Aq~~ 1581 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGE 1581 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666655543
No 34
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=51.73 E-value=3.2e+02 Score=28.95 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHhchhhhhhh
Q 006626 64 GATVVVGVGLIAYQNGYLDQYID 86 (638)
Q Consensus 64 g~~~~~~~~~~ay~~g~~d~~~~ 86 (638)
||..|-|-.|+.|=.-|+|-+-.
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~ 23 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINS 23 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHT
T ss_pred CCcccccHHHHHHHHHHHHHHhC
Confidence 66667777766555555554443
No 35
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=51.63 E-value=2.7e+02 Score=35.14 Aligned_cols=8 Identities=13% Similarity=0.592 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 006626 420 SIAREKVA 427 (638)
Q Consensus 420 ~VeqER~~ 427 (638)
++++||..
T Consensus 498 r~erer~~ 505 (1021)
T PTZ00266 498 RLERDRLD 505 (1021)
T ss_pred HHHHHHHH
Confidence 34444433
No 36
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=50.58 E-value=3.6e+02 Score=30.73 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 394 ELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMA 433 (638)
Q Consensus 394 EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~ 433 (638)
+|++|..+.++.|.--. |.++++.+|=++|..+|.
T Consensus 303 ~LqrQKle~e~~l~a~q-----eakek~~KEAqareaklq 337 (442)
T PF06637_consen 303 DLQRQKLEAEQGLQASQ-----EAKEKAGKEAQAREAKLQ 337 (442)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 44555555555543222 335555555555555554
No 37
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=48.61 E-value=4.5e+02 Score=29.75 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006626 359 TEEAAILEKELKRERAKAAATI 380 (638)
Q Consensus 359 ~~~~a~l~~efE~Er~kla~a~ 380 (638)
+.+...+...+|+||.+|..++
T Consensus 134 aaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 134 AAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred hhccchHHHHHHHHHHHHHHHH
Confidence 4455678899999999998886
No 38
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.60 E-value=6e+02 Score=31.22 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCCC
Q 006626 516 ETLLQLNQKFDALKGTLRHFSLIPPG 541 (638)
Q Consensus 516 ~T~aqL~~RF~~Va~~iRraSLVPe~ 541 (638)
....+|++.|..|.-++-+++--|+-
T Consensus 666 v~ss~LK~k~E~Lk~Evaka~~~pd~ 691 (762)
T PLN03229 666 IRSSDLKSKIELLKLEVAKASKTPDV 691 (762)
T ss_pred hcchhHHHHHHHHHHHHHhcCCCCCc
Confidence 33456888888888888777776654
No 39
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=47.99 E-value=6 Score=45.26 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 006626 372 ERAKAAATIKSLQEKMEEKLRMELEQKENEAES---KLKNALELAKA---------EIAASIAREKVAQIEKMAEANLH 438 (638)
Q Consensus 372 Er~kla~a~K~l~e~~EekLr~EL~~qe~E~e~---rL~kl~el~ka---------Ei~~~VeqER~~rL~kL~EL~~~ 438 (638)
+..|+-..|+.-.+.-|+|||++-++++..+.. ||...+|..++ +.|.+|-.+...||..|++.|.+
T Consensus 405 qt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~R 483 (495)
T PF12004_consen 405 QTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSR 483 (495)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhcccccccccc
Confidence 444566666655555777887766655433333 22222222222 23444444555666666666665
No 40
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.68 E-value=8.3e+02 Score=32.30 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHhhcceeeeccc-cCCC-CCC--HHHHHHHHHHHHhcCCHHHHH
Q 006626 517 TLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVKE-ADQA-NDG--IESVICRVESYLREGKLAEAA 592 (638)
Q Consensus 517 T~aqL~~RF~~Va~~iRraSLVPe~gaGll~hllS~l~S~Llf~p~K~-G~~~-GdD--veSILARAE~~L~~GDLd~Aa 592 (638)
...++.++-..+...+.+-+....+...++..+. ..+.-+++ .-- -++. ++. +.+.|.-+..+|-..|++.|.
T Consensus 646 ~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~~-~~~~Gvlv--sel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~ 722 (1486)
T PRK04863 646 ERDELAARKQALDEEIERLSQPGGSEDPRLNALA-ERFGGVLL--SEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAA 722 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCccHHHHHHH-HhcCCeeh--hHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHH
Confidence 3457777777788888765532222112233322 11111112 000 1122 222 678999999999999999999
Q ss_pred HHHHhcCCChhhh
Q 006626 593 DALEEGVRGSQAE 605 (638)
Q Consensus 593 rELEn~L~G~~Ar 605 (638)
..+ +.|.+. |-
T Consensus 723 ~ai-~~L~~~-p~ 733 (1486)
T PRK04863 723 EQL-AGLEDC-PE 733 (1486)
T ss_pred HHH-HhccCC-cc
Confidence 999 699998 63
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.62 E-value=7e+02 Score=31.12 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.6
Q ss_pred chhhhhhcccc
Q 006626 269 ASLLDAYHLRD 279 (638)
Q Consensus 269 ~~l~~~y~l~~ 279 (638)
..|+--+.|.|
T Consensus 229 ~~LA~IW~LsD 239 (1118)
T KOG1029|consen 229 NQLAHIWTLSD 239 (1118)
T ss_pred hhHhhheeeec
Confidence 34444444433
No 42
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=45.18 E-value=1.9e+02 Score=27.08 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 389 EKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAF 446 (638)
Q Consensus 389 ekLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av 446 (638)
+.++..+.+.-......|.+++.++...+...+..=-...-+.+++|..+|.+|+..+
T Consensus 55 e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l 112 (118)
T TIGR01837 55 EEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQV 112 (118)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455566665555445544433222333356666777777665543
No 43
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=44.18 E-value=8e+02 Score=31.89 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=6.6
Q ss_pred cCcccccccccc
Q 006626 23 LPSIISARKEYS 34 (638)
Q Consensus 23 ~p~~~~~~~~~~ 34 (638)
+-+||...+.=+
T Consensus 219 FGsClkm~~dG~ 230 (1317)
T KOG0612|consen 219 FGSCLKMDADGT 230 (1317)
T ss_pred chhHHhcCCCCc
Confidence 556666665433
No 44
>PTZ00121 MAEBL; Provisional
Probab=43.84 E-value=9.5e+02 Score=32.17 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 006626 431 KMAEANLH 438 (638)
Q Consensus 431 kL~EL~~~ 438 (638)
+|++...+
T Consensus 1261 r~a~~A~r 1268 (2084)
T PTZ00121 1261 RMAHFARR 1268 (2084)
T ss_pred HHHHHHHH
Confidence 33333333
No 45
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=43.63 E-value=76 Score=24.83 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 576 ICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQS 630 (638)
Q Consensus 576 LARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~vL~A 630 (638)
+.++..++..||++.|++.++..|.-. |. -..-|..-++......+--+.+..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~-~~~a~~~lg~~~~~~g~~~~A~~~ 53 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-PD-NPEAWYLLGRILYQQGRYDEALAY 53 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-TT-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467888899999999999987666655 44 444555555555554444444333
No 46
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.83 E-value=3.8e+02 Score=27.25 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+....++.+.+..+|++.|.+
T Consensus 91 Ae~~~~eA~~~l~e~e~~L~~ 111 (205)
T PRK06231 91 ANELKQQAQQLLENAKQRHEN 111 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777766
No 47
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.66 E-value=7.2e+02 Score=30.42 Aligned_cols=151 Identities=28% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHhhhhhcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 006626 321 AEQRQAELDGRAFA-EEKRALKEKYEKELRDSRARELMR----TEEAAILEKELKRERAKAAATIKSL------QEKMEE 389 (638)
Q Consensus 321 a~k~Qae~Da~~f~-eel~~l~~kyekeL~d~aA~el~~----~~~~a~l~~efE~Er~kla~a~K~l------~e~~Ee 389 (638)
|.-.||++=.. + .|++.|.++. .-|+.......|+ +.+-..+..+-+..|+......-.+ ...+|+
T Consensus 60 ~lsqqaelis~--qlqE~rrle~e~-~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE 136 (739)
T PF07111_consen 60 ALSQQAELISR--QLQELRRLEEEV-RALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEE 136 (739)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---H
Q 006626 390 KLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALG---A 466 (638)
Q Consensus 390 kLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lA---a 466 (638)
..+.||++.....+.+|..|. ..+-+.|..|..+++.|+..+ ++-..+.....-.|+.+ +
T Consensus 137 ~~q~ELee~q~~Hqeql~~Lt---------------~aHq~~l~sL~~k~~~Le~~L--~~le~~r~~e~~~La~~q~e~ 199 (739)
T PF07111_consen 137 GSQRELEEAQRLHQEQLSSLT---------------QAHQEALASLTSKAEELEKSL--ESLETRRAGEAKELAEAQREA 199 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-hCCCChHHH---HHHHHHhhc
Q 006626 467 LALEDAL-SRGLPIQKE---IDTLYTYLD 491 (638)
Q Consensus 467 ~AL~~Al-~~g~Pf~~E---L~aLk~la~ 491 (638)
..|+.-+ ..+.-|... +..|+.+.|
T Consensus 200 d~L~~qLsk~~~~le~q~tlv~~LR~YvG 228 (739)
T PF07111_consen 200 DLLREQLSKTQEELEAQVTLVEQLRKYVG 228 (739)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHh
No 48
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.45 E-value=4.2e+02 Score=27.69 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhcC
Q 006626 415 AEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDG 492 (638)
Q Consensus 415 aEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lAa~AL~~Al~~g~Pf~~EL~aLk~la~g 492 (638)
+++...+..++...-..+..+...+..|..-+.. +. .-..+.++....+..||.+.+++..|
T Consensus 247 ~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~------~~----------~ey~~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 247 RELEQRLDEEREEYQAEIAELEEELAELREEMAR------QL----------REYQELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH------HH----------HHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 3445555555555555555555555555333222 22 23344444556788999999998864
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.06 E-value=8.5e+02 Score=31.11 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=14.5
Q ss_pred hhcCCCCH--HHHHHHHHHHHHHHhh
Q 006626 511 RYHGTETL--LQLNQKFDALKGTLRH 534 (638)
Q Consensus 511 ae~GV~T~--aqL~~RF~~Va~~iRr 534 (638)
...||.+. .+|.++...+...+..
T Consensus 764 ~~~GvD~~~I~~l~~~i~~L~~~l~~ 789 (1201)
T PF12128_consen 764 AGKGVDPERIQQLKQEIEQLEKELKR 789 (1201)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666663 3666666666666644
No 50
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.52 E-value=1.1e+03 Score=32.21 Aligned_cols=14 Identities=14% Similarity=0.416 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 006626 415 AEIAASIAREKVAQ 428 (638)
Q Consensus 415 aEi~~~VeqER~~r 428 (638)
++|.+.++.||..|
T Consensus 1107 ~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1107 KELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666654
No 51
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=40.17 E-value=1.4e+02 Score=28.35 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=20.0
Q ss_pred HHHHHH-HHHHHHHhhhccCCCCCCCHHHHHHHH
Q 006626 520 QLNQKF-DALKGTLRHFSLIPPGGGGILTHSLAH 552 (638)
Q Consensus 520 qL~~RF-~~Va~~iRraSLVPe~gaGll~hllS~ 552 (638)
+...+| ..+...++..---|+++|++.+-+--.
T Consensus 40 ~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~ 73 (139)
T TIGR02284 40 GEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQF 73 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 344444 245556666666888877887754433
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.11 E-value=7.9e+02 Score=29.85 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006626 429 IEKMAEANLHINALCMAFYA 448 (638)
Q Consensus 429 L~kL~EL~~~lqaL~~Av~a 448 (638)
+..|..|+.+-..|+..+-+
T Consensus 593 ~~aL~amqdk~~~LE~sLsa 612 (697)
T PF09726_consen 593 MSALSAMQDKNQHLENSLSA 612 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhH
Confidence 44444455554555444433
No 53
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=38.90 E-value=3.9e+02 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+....++...+..+|++.|.+
T Consensus 67 Ae~~~~eA~~~~~e~e~~L~~ 87 (184)
T CHL00019 67 SEERREEAIEKLEKARARLRQ 87 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667777776666
No 54
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.48 E-value=8.3e+02 Score=29.92 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006626 389 EKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFA 459 (638)
Q Consensus 389 ekLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~v 459 (638)
.||||||+...++ ++-..+=|+-+-.+-+++-.+|..|++-+.+..++.+..+++
T Consensus 643 ~kLRnELK~LKED----------------AATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsL 697 (717)
T PF09730_consen 643 MKLRNELKALKED----------------AATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSL 697 (717)
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4789988754432 233334455555566666666666666666655665555554
No 55
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.44 E-value=4.1e+02 Score=26.36 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+..++.+...+..+|+..|.+
T Consensus 74 Ae~~~~eA~~~~~eye~~L~~ 94 (181)
T PRK13454 74 AEELKQKAVEAEKAYNKALAD 94 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777777666
No 56
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.27 E-value=4.7e+02 Score=26.99 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCCChHHH
Q 006626 466 ALALEDALSRGLPIQKE 482 (638)
Q Consensus 466 a~AL~~Al~~g~Pf~~E 482 (638)
+..|+..+....||..+
T Consensus 111 ~~~L~~~v~~d~Pf~~~ 127 (251)
T PF11932_consen 111 IDELEQFVELDLPFLLE 127 (251)
T ss_pred HHHHHHHHhcCCCCChH
Confidence 35777777788999877
No 57
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.78 E-value=4.1e+02 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
|.-.+++.+.|.++|+..|++
T Consensus 47 Ae~~r~eA~~l~~e~e~~L~~ 67 (154)
T PRK06568 47 AEKLKEDAALLFEQTNAQIKK 67 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777777666
No 58
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.53 E-value=8.5e+02 Score=29.79 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 364 ILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAES 404 (638)
Q Consensus 364 ~l~~efE~Er~kla~a~K~l~e~~EekLr~EL~~qe~E~e~ 404 (638)
.+..++++++.++....+.+.+.+.++.+..+++...+.+.
T Consensus 548 ~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~ 588 (782)
T PRK00409 548 KLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333333333333333333333
No 59
>PF15556 Zwint: ZW10 interactor
Probab=37.48 E-value=5.2e+02 Score=27.27 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 368 ELKRERAKAAATIKSLQE---KMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCM 444 (638)
Q Consensus 368 efE~Er~kla~a~K~l~e---~~EekLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~ 444 (638)
|-.+-+..|..++..++. .+.+|++..-++-...-+.+|..| +|+++.|-.-..+-..+|+.+...+..|..
T Consensus 95 EaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~L-----ae~sAEvrerq~~~qqeLe~l~qeL~~lkq 169 (252)
T PF15556_consen 95 EAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHL-----AEVSAEVRERQTGTQQELERLYQELGTLKQ 169 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666655433 366677665444333333344443 355666655577778889989998888876
Q ss_pred HHHHhhHHHHHHHH
Q 006626 445 AFYARSEEARKSYF 458 (638)
Q Consensus 445 Av~arsE~~rqs~~ 458 (638)
-.-...+-+.+...
T Consensus 170 Qa~qeqdKLQR~qt 183 (252)
T PF15556_consen 170 QAGQEQDKLQRHQT 183 (252)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555554443
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.71 E-value=8.1e+02 Score=29.32 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006626 333 FAEEKRALKEKYEKELRD 350 (638)
Q Consensus 333 f~eel~~l~~kyekeL~d 350 (638)
+.+++..|..++...+++
T Consensus 92 L~kElE~L~~qlqaqv~~ 109 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVEN 109 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544444
No 61
>PRK12704 phosphodiesterase; Provisional
Probab=35.89 E-value=7.6e+02 Score=28.76 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 006626 422 AREKVAQIEKMA 433 (638)
Q Consensus 422 eqER~~rL~kL~ 433 (638)
.+++...|+++.
T Consensus 137 ~~~~~~~l~~~a 148 (520)
T PRK12704 137 IEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHh
Confidence 344455555555
No 62
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.78 E-value=4.4e+02 Score=25.93 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+....++-..+..+|+++|..
T Consensus 70 Ae~~~~eA~~~l~e~e~~L~~ 90 (184)
T PRK13455 70 ARALREEAQTLLASYERKQRE 90 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555554
No 63
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.71 E-value=1e+03 Score=30.24 Aligned_cols=137 Identities=20% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 333 FAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATI------KSLQEKMEEKLRMELEQKENEAESKL 406 (638)
Q Consensus 333 f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~~efE~Er~kla~a~------K~l~e~~EekLr~EL~~qe~E~e~rL 406 (638)
|+..+..-+...+++|.+.+-. ..++..|.+++..|++.++.++ |.+.|+--+-|++||+...+ +-..|
T Consensus 270 fkSkim~qqa~Lqrel~raR~e----~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkE-r~del 344 (1243)
T KOG0971|consen 270 FKSKIMEQQADLQRELKRARKE----AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE-RVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 006626 407 KNALELAKAEIAASIAREKVAQ--------IEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLP 478 (638)
Q Consensus 407 ~kl~el~kaEi~~~VeqER~~r--------L~kL~EL~~~lqaL~~Av~arsE~~rqs~~vhkL~lAa~AL~~Al~~g~P 478 (638)
+--.|..|+|+.++ .+- ..+|+.-|.+++.--.-+.+-+...++-++ -+..-+.+...
T Consensus 345 etdlEILKaEmeek-----G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q---------K~~kelE~k~s 410 (1243)
T KOG0971|consen 345 ETDLEILKAEMEEK-----GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ---------KLQKELEKKNS 410 (1243)
T ss_pred HHHHHHHHHHHHhc-----CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH---------HHHHHHHHHhh
Q ss_pred hHHHHHHHHH
Q 006626 479 IQKEIDTLYT 488 (638)
Q Consensus 479 f~~EL~aLk~ 488 (638)
=..||...+.
T Consensus 411 E~~eL~r~kE 420 (1243)
T KOG0971|consen 411 ELEELRRQKE 420 (1243)
T ss_pred HHHHHHHHHH
No 64
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.06 E-value=9.7e+02 Score=29.71 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 367 KELKRERAKAAATIKSLQEK----MEEKLRMELEQKENEAESKLKNALELAKA 415 (638)
Q Consensus 367 ~efE~Er~kla~a~K~l~e~----~EekLr~EL~~qe~E~e~rL~kl~el~ka 415 (638)
+.++-|+..|...-|..-+. -+.+||++-++...|.+..+.+..+..+.
T Consensus 837 r~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~ 889 (1187)
T KOG0579|consen 837 RTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQ 889 (1187)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44555555554443332222 33477777777666666666655554443
No 65
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=35.03 E-value=4.4e+02 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+...+.+.+.+..+|+..|.+
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~ 85 (167)
T PRK08475 65 IQEKLKESKEKKEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666665
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.53 E-value=5.3e+02 Score=26.56 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 006626 423 REKVAQIEKMAEA 435 (638)
Q Consensus 423 qER~~rL~kL~EL 435 (638)
.||..||++|.++
T Consensus 127 ~eR~~Rl~~L~~~ 139 (251)
T PF11932_consen 127 EERQERLARLRAM 139 (251)
T ss_pred HHHHHHHHHHHHh
Confidence 4666666666543
No 67
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=33.84 E-value=3.6e+02 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 006626 329 DGRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 329 Da~~f~eel~~l~~kyekeL~d 350 (638)
++.....+...+..+|++.|..
T Consensus 41 ~a~~~~~ea~~~~~e~~~~l~~ 62 (132)
T PF00430_consen 41 EAEELKEEAEQLLAEYEEKLAE 62 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777766666
No 68
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.42 E-value=6.3e+02 Score=27.06 Aligned_cols=18 Identities=11% Similarity=-0.045 Sum_probs=11.8
Q ss_pred chhhhhhccccccccCCC
Q 006626 269 ASLLDAYHLRDKIDEGID 286 (638)
Q Consensus 269 ~~l~~~y~l~~~~~~~~~ 286 (638)
-+|--.||+.-.+-..|.
T Consensus 29 ~aLG~eYnITisSIiPTT 46 (290)
T COG4026 29 LALGSEYNITISSIIPTT 46 (290)
T ss_pred hhhcccceeEEEeeccCc
Confidence 455567888776666555
No 69
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.20 E-value=2.1e+02 Score=31.42 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=65.0
Q ss_pred HhcCchhh---------hhcCCCCHHHHHHHHHHHHHHHh------hhccCCCCCCCHHHHHHHHHhhcceeeeccccCC
Q 006626 503 LSSLPEET---------RYHGTETLLQLNQKFDALKGTLR------HFSLIPPGGGGILTHSLAHIASWLKVHQVKEADQ 567 (638)
Q Consensus 503 LsSLP~~A---------ae~GV~T~aqL~~RF~~Va~~iR------raSLVPe~gaGll~hllS~l~S~Llf~p~K~G~~ 567 (638)
|.+||... .=.|.-+..+|+++..++.+.-. -..+++.+. ++.+...+...+-. .+
T Consensus 95 iqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~---~~~a~~~~~~al~~------~~ 165 (304)
T COG3118 95 VQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAED---FGEAAPLLKQALQA------AP 165 (304)
T ss_pred cCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccc---hhhHHHHHHHHHHh------Cc
Confidence 46777652 13578888999999988776521 112344333 34444433333333 33
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 006626 568 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 621 (638)
Q Consensus 568 ~GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEv 621 (638)
.+ .+.++.-|+.+|..|+.+.|-..| ++|+.. .+ ...|.. ++.+++.
T Consensus 166 ~~--~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~-~~--~~~~~~-l~a~i~l 212 (304)
T COG3118 166 EN--SEAKLLLAECLLAAGDVEAAQAIL-AALPLQ-AQ--DKAAHG-LQAQIEL 212 (304)
T ss_pred cc--chHHHHHHHHHHHcCChHHHHHHH-HhCccc-ch--hhHHHH-HHHHHHH
Confidence 33 678999999999999999999999 689886 32 344555 4444443
No 70
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.80 E-value=5.5e+02 Score=26.20 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 006626 418 AASIAREKVAQI 429 (638)
Q Consensus 418 ~~~VeqER~~rL 429 (638)
...++++|..-+
T Consensus 155 e~~I~~ek~~A~ 166 (204)
T PRK09174 155 EARIAAIKAKAM 166 (204)
T ss_pred HHHHHHHHHHHH
Confidence 445555565433
No 71
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=32.61 E-value=4.6e+02 Score=25.21 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+...+++...+..+|++.|.+
T Consensus 51 A~~~~~ea~~~~~e~e~~l~~ 71 (164)
T PRK14471 51 AEEARKEMQNLQADNERLLKE 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444566666677777766665
No 72
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=32.57 E-value=64 Score=21.97 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 006626 574 SVICRVESYLREGKLAEAADALE 596 (638)
Q Consensus 574 SILARAE~~L~~GDLd~AarELE 596 (638)
..+..+..++..||++.|.+.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678899999999999998873
No 73
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.39 E-value=3e+02 Score=33.40 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 006626 363 AILEKELKRERAKAAAT---IKSLQEKMEEKLRMELE 396 (638)
Q Consensus 363 a~l~~efE~Er~kla~a---~K~l~e~~EekLr~EL~ 396 (638)
..+...++.|++-|.+- +|...+.-.+|.+.+|+
T Consensus 824 q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele 860 (948)
T KOG0577|consen 824 QVLREQLEQELELLNAYQSKIKMQAEEQHERELRELE 860 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655432 22233333344444443
No 74
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.26 E-value=8.8e+02 Score=28.89 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 366 EKELKRERAKAAATIKSLQEKMEE------KLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHI 439 (638)
Q Consensus 366 ~~efE~Er~kla~a~K~l~e~~Ee------kLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~l 439 (638)
..+-+.|...+...+..+...++. .|+.++.+...+.+..-....++. .+.--.+|.-.| |.+...+|
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le----~~~~l~~k~~~l--L~d~e~ni 396 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE----EELKLKKKTVEL--LPDAEENI 396 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--hcCcHHHH
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Q 006626 440 NALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYL 490 (638)
Q Consensus 440 qaL~~Av~arsE~~rqs~~vhkL~lAa~AL~~Al~~g~Pf~~EL~aLk~la 490 (638)
..|+..+.+...-...... -|-. ...|+..|+..|+...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~---qWe~---------~R~pL~~e~r~lk~~~ 435 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQ---QWEK---------HRAPLIEEYRRLKEKA 435 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHH---------HHhHHHHHHHHHHHHH
No 75
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=32.25 E-value=89 Score=24.44 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhh
Q 006626 569 NDGIESVICRVESYLREGKLAEAADALEEGVRGSQAE 605 (638)
Q Consensus 569 GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar 605 (638)
.++.+..+..++.++..|+++.|...|+ .+.-..|.
T Consensus 22 p~~~~~~~~la~~~~~~g~~~~A~~~l~-~~~~~~~~ 57 (68)
T PF14559_consen 22 PDNPEARLLLAQCYLKQGQYDEAEELLE-RLLKQDPD 57 (68)
T ss_dssp TTSHHHHHHHHHHHHHTT-HHHHHHHHH-CCHGGGTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHCcC
Confidence 4588999999999999999999999995 66554343
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=31.79 E-value=8.2e+02 Score=29.30 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 006626 434 EANLHINALCMAFYAR 449 (638)
Q Consensus 434 EL~~~lqaL~~Av~ar 449 (638)
+|+.+|..|+.+|..-
T Consensus 164 eLK~QL~Elq~~Fv~l 179 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKL 179 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777765543
No 77
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.46 E-value=5e+02 Score=25.32 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+....++...+..+|++.|.+
T Consensus 59 Ae~~~~eA~~~~~e~e~~l~~ 79 (173)
T PRK13460 59 ASELRLEAEALLKDYEARLNS 79 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777766
No 78
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=31.33 E-value=80 Score=24.93 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC
Q 006626 576 ICRVESYLREGKLAEAADALEEGVRG 601 (638)
Q Consensus 576 LARAE~~L~~GDLd~AarELEn~L~G 601 (638)
|.-|+.|++.||.+.|-..|+..+.+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56789999999999999999755544
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=31.24 E-value=9.6e+02 Score=28.50 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=60.6
Q ss_pred HHhcCchhhhhcCCCCHHHHHHHHHHHHHHHhhhccCCCC-CCCHHHHHHHHHhhcce-eeeccccCC--CCCCHHHHHH
Q 006626 502 VLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPG-GGGILTHSLAHIASWLK-VHQVKEADQ--ANDGIESVIC 577 (638)
Q Consensus 502 aLsSLP~~Aae~GV~T~aqL~~RF~~Va~~iRraSLVPe~-gaGll~hllS~l~S~Ll-f~p~K~G~~--~GdDveSILA 577 (638)
+|..|+..--....-+..++-.||..=-..++..+. |-+ .....--=+..+-+.+. ++ .|-... .+.++..-+.
T Consensus 250 Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~-~~~~~~~~~rEEl~~~R~~i~~Lr-~klselE~~n~~L~~~I~ 327 (546)
T KOG0977|consen 250 AIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAE-RANVEQNYAREELRRIRSRISGLR-AKLSELESRNSALEKRIE 327 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc-cccchhHHHHHHHHHHHhcccchh-hhhccccccChhHHHHHH
Confidence 334444443344456778888888766667765442 221 11111111111111111 10 011222 2345556666
Q ss_pred HHHHHHhcC--CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006626 578 RVESYLREG--KLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTF 627 (638)
Q Consensus 578 RAE~~L~~G--DLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~v 627 (638)
+-++-|... -++.++...++.+.-- |.=|.--+.+--..+.+++.|+.
T Consensus 328 dL~~ql~e~~r~~e~~L~~kd~~i~~m--Reec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 328 DLEYQLDEDQRSFEQALNDKDAEIAKM--REECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred HHHhhhhhhhhhhhhhhhhHHHHHHHH--HHHHHHHHHHHHHhhchHhHHHh
Confidence 666666554 2555555554333332 55666677777777888888774
No 80
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.99 E-value=7.6e+02 Score=27.25 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 006626 322 EQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILE-KELKRERAKAA--ATIKSLQEKMEEKLRMELEQK 398 (638)
Q Consensus 322 ~k~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~-~efE~Er~kla--~a~K~l~e~~EekLr~EL~~q 398 (638)
+++|.+-... .||..+.++ ..-+.+.|.+--++++..+.+ ++++++|.+.. ...|-+.+.++.|--..-...
T Consensus 324 kkrqlerqek---qeleqmaee--ekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqke 398 (445)
T KOG2891|consen 324 KKRQLERQEK---QELEQMAEE--EKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKE 398 (445)
T ss_pred HHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 399 ENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINA 441 (638)
Q Consensus 399 e~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqa 441 (638)
++.....+++..++. ..-+++|+.=+++.|..-.-++-+
T Consensus 399 eeklk~e~qkikele----ek~~eeedal~~all~~qeirl~~ 437 (445)
T KOG2891|consen 399 EEKLKAEEQKIKELE----EKIKEEEDALLLALLNLQEIRLIA 437 (445)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHH
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.76 E-value=9.7e+02 Score=28.44 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 417 IAASIAREKVAQIEKMAEANLHINALCMA 445 (638)
Q Consensus 417 i~~~VeqER~~rL~kL~EL~~~lqaL~~A 445 (638)
+..++.+|+-...=+|.+.+..|..|..+
T Consensus 397 L~~ql~ke~D~n~vqlsE~~rel~Elks~ 425 (546)
T PF07888_consen 397 LEKQLGKEKDCNRVQLSENRRELQELKSS 425 (546)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34455556655555666666666665554
No 82
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.67 E-value=9.5e+02 Score=27.96 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 006626 423 REKVAQIEKMA 433 (638)
Q Consensus 423 qER~~rL~kL~ 433 (638)
+|+...|+++.
T Consensus 132 ~~~~~~le~~a 142 (514)
T TIGR03319 132 AEQREELERIS 142 (514)
T ss_pred HHHHHHHHHHh
Confidence 34455555555
No 83
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.52 E-value=5.4e+02 Score=25.09 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+....++...+..+|++.|.+
T Consensus 61 Ae~~~~eA~~~~~e~e~~L~~ 81 (175)
T PRK14472 61 AHSAKDEAEAILRKNRELLAK 81 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666665
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=28.64 E-value=1.6e+02 Score=29.14 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=58.2
Q ss_pred CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006626 566 DQA-NDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCLSI 637 (638)
Q Consensus 566 ~~~-GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~vL~A~Aaa~sL 637 (638)
+++ .++++.|.+.+-.+...|+|+.|.+.- ..|.-- ......-|+.=+=.+-...+--+.|.+|+.+..|
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f-~~L~~~-Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLF-QLLTIY-DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHh-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456 889999999999999999999999988 466554 5667888998888777788888888888888765
No 85
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.09 E-value=5.3e+02 Score=32.54 Aligned_cols=92 Identities=27% Similarity=0.266 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 329 DGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKN 408 (638)
Q Consensus 329 Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~~efE~Er~kla~a~K~l~e~~EekLr~EL~~qe~E~e~rL~k 408 (638)
+.+...+.++.=..+.++..+|+++++-+.++-....-++|=+||.+|+.....-++....+=..-|++...+ +..|
T Consensus 1093 Elk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~-~kal-- 1169 (1189)
T KOG1265|consen 1093 ELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEE-EKAL-- 1169 (1189)
T ss_pred HHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 409 ALELAKAEIAASIAREKVAQIEKM 432 (638)
Q Consensus 409 l~el~kaEi~~~VeqER~~rL~kL 432 (638)
...+++|-..+.+.|
T Consensus 1170 ---------~~e~~~~~e~~~~~~ 1184 (1189)
T KOG1265|consen 1170 ---------DAEAEQEYEEQMARL 1184 (1189)
T ss_pred ---------HHHHHHHHHHHHhcC
No 86
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.92 E-value=7.2e+02 Score=26.03 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+...+.+-+++.++|++++.+
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~~ 68 (250)
T PRK14474 48 AEQRQQEAGQEAERYRQKQQS 68 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555666655554
No 87
>PRK12704 phosphodiesterase; Provisional
Probab=27.81 E-value=1e+03 Score=27.74 Aligned_cols=10 Identities=30% Similarity=0.262 Sum_probs=5.3
Q ss_pred HHHHHHHhhc
Q 006626 482 EIDTLYTYLD 491 (638)
Q Consensus 482 EL~aLk~la~ 491 (638)
-+.+|..+++
T Consensus 232 nir~~e~~tg 241 (520)
T PRK12704 232 NIRALETLTG 241 (520)
T ss_pred hHHHHHHHhC
Confidence 3556655553
No 88
>PRK10780 periplasmic chaperone; Provisional
Probab=27.71 E-value=5.7e+02 Score=24.78 Aligned_cols=107 Identities=10% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 315 LQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME 394 (638)
Q Consensus 315 ~~AI~aa~k~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~~efE~Er~kla~a~K~l~e~~EekLr~E 394 (638)
|+.|..-+-.+.-+.....+..|++.-..+.++|.. ...+|..+..++...-..+.+..-++.+.|
T Consensus 26 Ig~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~--------------~~~elq~~~~~~q~~~~~ms~~~~~~~~~e 91 (165)
T PRK10780 26 IAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQR--------------METDLQAKMQKLQRDGSTMKGSDRTKLEKD 91 (165)
T ss_pred eEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccccCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 395 LEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHI 439 (638)
Q Consensus 395 L~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~l 439 (638)
|.+...+.++.... ++.++..+-..+...-+.++.+.-..+
T Consensus 92 l~~~~~~~q~~~~~----~qq~~~~~~~e~~~~i~~ki~~ai~~v 132 (165)
T PRK10780 92 VMAQRQTFSQKAQA----FEQDRRRRSNEERNKILTRIQTAVKSV 132 (165)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 89
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.31 E-value=6.2e+02 Score=25.02 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 418 AASIAREKVAQIEKMAEANLHINALCMA 445 (638)
Q Consensus 418 ~~~VeqER~~rL~kL~EL~~~lqaL~~A 445 (638)
...+++||.. .+.+++..+-.|...
T Consensus 106 ~~~Ie~Ek~~---Al~elr~eva~Lav~ 130 (154)
T PRK06568 106 IQLIQNQKST---ASKELQDEFCDEVIK 130 (154)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4445666654 455666666666444
No 90
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=26.75 E-value=1.4e+03 Score=28.86 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 417 IAASIAREKVAQIEKMAEANLHINAL 442 (638)
Q Consensus 417 i~~~VeqER~~rL~kL~EL~~~lqaL 442 (638)
..+.+.+||..--.+|.-...+|..+
T Consensus 671 q~eel~Ke~kElq~rL~~q~KkiDh~ 696 (988)
T KOG2072|consen 671 QIEELEKERKELQSRLQYQEKKIDHL 696 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34444444443333333333333333
No 91
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=26.41 E-value=1.1e+03 Score=27.81 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006626 399 ENEAESKLKNALELAK---AEIAASIA-------REKVAQIEKMAEANLHINALCMAFYAR 449 (638)
Q Consensus 399 e~E~e~rL~kl~el~k---aEi~~~Ve-------qER~~rL~kL~EL~~~lqaL~~Av~ar 449 (638)
.+|.+.||.+|.++.. +.+....+ +|+...+++...++..|-+|+.-+...
T Consensus 224 reElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~ 284 (531)
T PF15450_consen 224 REELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQN 284 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4666778887766553 23344444 778888887777777777766654443
No 92
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=26.24 E-value=72 Score=23.87 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 006626 573 ESVICRVESYLREGKLAEAADALEEGVRG 601 (638)
Q Consensus 573 eSILARAE~~L~~GDLd~AarELEn~L~G 601 (638)
+..+..++.+.+.|+++.|.+.++..|.-
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999655544
No 93
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=25.87 E-value=6.9e+02 Score=25.14 Aligned_cols=8 Identities=38% Similarity=0.708 Sum_probs=3.1
Q ss_pred hhhccccc
Q 006626 298 ELNNGYLS 305 (638)
Q Consensus 298 ~~~~~~~~ 305 (638)
|+..||++
T Consensus 13 G~~~G~~~ 20 (201)
T PF12072_consen 13 GIGIGYLV 20 (201)
T ss_pred HHHHHHHH
Confidence 33334433
No 94
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.45 E-value=8.6e+02 Score=26.39 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=11.0
Q ss_pred hhhhcCCCCHHHHHHHHH
Q 006626 509 ETRYHGTETLLQLNQKFD 526 (638)
Q Consensus 509 ~Aae~GV~T~aqL~~RF~ 526 (638)
.+.+.-|..+.+|..-|.
T Consensus 208 YIk~nKvV~ledLas~f~ 225 (299)
T KOG3054|consen 208 YIKKNKVVPLEDLASEFG 225 (299)
T ss_pred HHHhcCeeeHHHHHHHhC
Confidence 345555666666666664
No 95
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=25.43 E-value=1.9e+02 Score=24.27 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhh--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 572 IESVICRVESYLREGKLAEAADALEEGVRGSQAE--EIVFDWVRRARNRAITEQGLTFLQ 629 (638)
Q Consensus 572 veSILARAE~~L~~GDLd~AarELEn~L~G~~Ar--~lA~DWL~dAR~RLEveQAl~vL~ 629 (638)
.++.+..+..++..|+++.|...++..+... |. ....-|..-++......+.-+.+.
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHHH
Confidence 4566777888888888888888885444433 32 234447777777666554333333
No 96
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.61 E-value=6.7e+02 Score=24.54 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 006626 329 DGRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 329 Da~~f~eel~~l~~kyekeL~d 350 (638)
++....++.+.+..+|++.|.+
T Consensus 60 ~Ae~~~~eA~~~~~e~e~~l~~ 81 (173)
T PRK13453 60 DAEQAKLNAQKLEEENKQKLKE 81 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566667777777777666
No 97
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.59 E-value=1.3e+03 Score=28.02 Aligned_cols=119 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 309 KVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKME 388 (638)
Q Consensus 309 k~~~d~~~AI~aa~k~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~~efE~Er~kla~a~K~l~e~~E 388 (638)
.++...+..++.-=-...+.=...+++....|+.++++++.+ -.++.++|..+...-+.+.+++|
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~---------------L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKE---------------LQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 389 EKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYA 448 (638)
Q Consensus 389 ekLr~EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqaL~~Av~a 448 (638)
+-..+ ++....|+.++..+.....-.-...||.-.-+ |..++.+++.|...+..
T Consensus 604 ~a~d~-----Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~E-L~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 604 EAKDK-----QEKLMKRVDRVLQLLNSQLPVLSEAEREFKKE-LERMKDQLQDLKASIEQ 657 (717)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
No 98
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=23.82 E-value=6.2e+02 Score=23.84 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+....++.+.+..+|+..|.+
T Consensus 47 a~~~~~~a~~~~~e~~~~l~~ 67 (156)
T PRK05759 47 AERAKKELELAQAKYEAQLAE 67 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666655
No 99
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=23.81 E-value=6.9e+02 Score=29.29 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=6.1
Q ss_pred chhHHHHHhcCch
Q 006626 496 DSVLDLVLSSLPE 508 (638)
Q Consensus 496 D~LV~aaLsSLP~ 508 (638)
+.+++..+..+|.
T Consensus 519 ~~~i~~L~~~~~~ 531 (542)
T PF10079_consen 519 PDFIDRLLEALPP 531 (542)
T ss_pred HHHHHHHHhcCCC
Confidence 4444444444443
No 100
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.55 E-value=6.8e+02 Score=24.20 Aligned_cols=84 Identities=21% Similarity=0.238 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 308 GKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKM 387 (638)
Q Consensus 308 ~k~~~d~~~AI~aa~k~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~~efE~Er~kla~a~K~l~e~~ 387 (638)
-+|.|=.++|..-+ |.+-. -|-+.|=+-.+.+++.-+. .+.+.+.+.. ......++.-+.++...+..+...+
T Consensus 20 rqIWLAGLGA~ak~---~~EG~--k~F~~LVk~Ge~~e~~~~~-~~~e~~~~~~-~~~~~~~~~~~~~~~~~~dklE~~f 92 (132)
T PF05597_consen 20 RQIWLAGLGAYAKA---QEEGS--KVFEALVKEGEKLEKKTRK-KAEEQVEEAR-DQVKSRVDDVKERATGQWDKLEQAF 92 (132)
T ss_pred HHHHHHHhhHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777775433 33322 2234444445554443332 1111111111 2223444555555555555556666
Q ss_pred HHHHHHHHHHH
Q 006626 388 EEKLRMELEQK 398 (638)
Q Consensus 388 EekLr~EL~~q 398 (638)
++++.+-|.+.
T Consensus 93 d~rV~~aL~rL 103 (132)
T PF05597_consen 93 DERVARALNRL 103 (132)
T ss_pred HHHHHHHHHhc
Confidence 66666666554
No 101
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=23.54 E-value=3.5e+02 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006626 458 FAHKLALGALALEDALSRGLPIQKEIDTL 486 (638)
Q Consensus 458 ~vhkL~lAa~AL~~Al~~g~Pf~~EL~aL 486 (638)
.+..|.-.|.+|++-++ |+.++++.+
T Consensus 349 ~V~EL~~~~~~L~~GLd---pLerqVre~ 374 (389)
T PF05633_consen 349 AVEELARVCEALSQGLD---PLERQVREV 374 (389)
T ss_pred HHHHHHHHHHHHHcccH---HHHHHHHHH
Confidence 34466667777776665 888887654
No 102
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.89 E-value=7.5e+02 Score=24.51 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 006626 417 IAASIAREKVAQIEK 431 (638)
Q Consensus 417 i~~~VeqER~~rL~k 431 (638)
...+++++|..-+..
T Consensus 132 a~~~I~~~k~~a~~~ 146 (181)
T PRK13454 132 SEKRIAEIRAGALES 146 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666654333
No 103
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=22.27 E-value=1.1e+03 Score=26.33 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=29.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 006626 302 GYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 302 ~~~~~~~k~~~d~~~AI~aa~k~Qae~Da~~f~eel~~l~~kyekeL~d 350 (638)
|.-+.-|..++|..++...-...|-+.|-.+=+-=|.-|+.--.++|+|
T Consensus 100 g~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~ 148 (366)
T KOG1118|consen 100 GDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKD 148 (366)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 4445678889998888777555666666554344444444433445555
No 104
>PTZ00121 MAEBL; Provisional
Probab=22.24 E-value=2.1e+03 Score=29.38 Aligned_cols=11 Identities=45% Similarity=0.459 Sum_probs=4.5
Q ss_pred chhhhhhhhhh
Q 006626 288 ATEDFINVMEE 298 (638)
Q Consensus 288 ~~e~~~~~~~~ 298 (638)
++|++++-.++
T Consensus 1092 ~~~~~~~~~e~ 1102 (2084)
T PTZ00121 1092 ATEEAFGKAEE 1102 (2084)
T ss_pred hhHHHhhhHHH
Confidence 34444433333
No 105
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.85 E-value=7.4e+02 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
|....++...+..+|++.|.+
T Consensus 53 Ae~~k~eAe~~~~~~e~~L~~ 73 (167)
T PRK14475 53 AQRLREEAQALLADVKAEREE 73 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555677777778888887777
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.77 E-value=2.3e+02 Score=24.86 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHH
Q 006626 569 NDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAI 620 (638)
Q Consensus 569 GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLE 620 (638)
.++++..+.++..++..|+.+.|+..++..+...+.......|...+...+|
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 3356677788889999999999999997677766334455677777777765
No 107
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.70 E-value=1.8e+03 Score=28.48 Aligned_cols=272 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhcccccCCcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006626 290 EDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILE--- 366 (638)
Q Consensus 290 e~~~~~~~~~~~~~~~~~~k~~~d~~~AI~aa~k~Qae~Da~~f~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~--- 366 (638)
++.+...|.-..-+-..-+.-+.|...=|.-++++-.+ ++.++.+-..+|+......-+-+--..-....|.
T Consensus 768 ~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~-----~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~ 842 (1174)
T KOG0933|consen 768 EDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEE-----SSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLE 842 (1174)
T ss_pred HHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 367 ---KELKRERAKAAATIKSLQEKMEEKLRM--ELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINA 441 (638)
Q Consensus 367 ---~efE~Er~kla~a~K~l~e~~EekLr~--EL~~qe~E~e~rL~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqa 441 (638)
..|+.|-..+...+......-...+.. ..........-++..+.-. .+...+|...-.-....+...+..
T Consensus 843 ~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~-----~e~~~~e~~~~~l~~kkle~e~~~ 917 (1174)
T KOG0933|consen 843 KQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTS-----QEKCLSEKSDGELERKKLEHEVTK 917 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhH-----HHHHHHHhhcccchHHHHHhHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH---------------------------------HHHHHHHH--------hCCCChH
Q 006626 442 LCMAFYARSEEARKSYFAHKLALG---------------------------------ALALEDAL--------SRGLPIQ 480 (638)
Q Consensus 442 L~~Av~arsE~~rqs~~vhkL~lA---------------------------------a~AL~~Al--------~~g~Pf~ 480 (638)
+..--.......+..-.=| =|+. -..|+..+ ++-.-=.
T Consensus 918 ~~~e~~~~~k~v~~l~~k~-~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~ 996 (1174)
T KOG0933|consen 918 LESEKANARKEVEKLLKKH-EWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKE 996 (1174)
T ss_pred hhhhHHHHHHHHHHHHHhc-cchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHhcCchhhhhcCCCCHHHHHHHHHHHHHHH---hhhccCCCCCCCHHH----------
Q 006626 481 KEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTL---RHFSLIPPGGGGILT---------- 547 (638)
Q Consensus 481 ~EL~aLk~la~gl~~D~LV~aaLsSLP~~Aae~GV~T~aqL~~RF~~Va~~i---RraSLVPe~gaGll~---------- 547 (638)
.+|..-+.... .+-.-|...|+.|.+.-.+.=+-+......+|..+...+ ..|.|.||+|.+++.
T Consensus 997 ~~lk~k~~~Ie--~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G~ 1074 (1174)
T KOG0933|consen 997 AALKTKKEIIE--KDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFGG 1074 (1174)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCccccceEEEEEeCc
Q ss_pred ----------------HHHHHHhhcceeeeccccCCCCCCHHHHH
Q 006626 548 ----------------HSLAHIASWLKVHQVKEADQANDGIESVI 576 (638)
Q Consensus 548 ----------------hllS~l~S~Llf~p~K~G~~~GdDveSIL 576 (638)
-++|.|+|+|.|+|-+ ..-=|.||+.|
T Consensus 1075 iWKeSL~ELSGGQRSLVALsLIlamL~fkPAP--lYILDEVDAAL 1117 (1174)
T KOG0933|consen 1075 IWKESLSELSGGQRSLVALSLILAMLKFKPAP--LYILDEVDAAL 1117 (1174)
T ss_pred cHHHHHHHhcCchHHHHHHHHHHHHHcCCCCc--eeehhhhHHhh
No 108
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.17 E-value=1.8e+03 Score=28.40 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006626 416 EIAASIAREKVAQIEKMAEANL 437 (638)
Q Consensus 416 Ei~~~VeqER~~rL~kL~EL~~ 437 (638)
+...-++.|+..-|.++.-|..
T Consensus 537 ~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 537 ELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3455666777666666654443
No 109
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=20.99 E-value=1.6e+03 Score=27.74 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhcc-CCCC
Q 006626 520 QLNQKFDALKGTLRHFSL-IPPG 541 (638)
Q Consensus 520 qL~~RF~~Va~~iRraSL-VPe~ 541 (638)
+|..|+.....+|-...- ||..
T Consensus 616 ~LqrRlqaaE~R~eel~q~v~~T 638 (961)
T KOG4673|consen 616 DLQRRLQAAERRCEELIQQVPET 638 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 566666555555533222 5554
No 110
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.84 E-value=1.4e+03 Score=26.75 Aligned_cols=7 Identities=29% Similarity=1.061 Sum_probs=2.6
Q ss_pred ChHHHHH
Q 006626 478 PIQKEID 484 (638)
Q Consensus 478 Pf~~EL~ 484 (638)
||...|.
T Consensus 144 Pl~e~l~ 150 (475)
T PRK10361 144 PLREQLD 150 (475)
T ss_pred hHHHHHH
Confidence 3333333
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.81 E-value=3.4e+02 Score=25.33 Aligned_cols=66 Identities=6% Similarity=-0.068 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006626 568 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCL 635 (638)
Q Consensus 568 ~GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~vL~A~Aaa~ 635 (638)
..++.+....++..+...|+++.|+..+...+... | .-..-|..-+.......+--+.+.++-.++
T Consensus 54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-A-SHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566666677777777777777776665444432 2 223445555555555555555555544443
No 112
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=20.70 E-value=9.5e+02 Score=24.82 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRD 350 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d 350 (638)
+...+.+...+..+|+..|.+
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~~ 68 (246)
T TIGR03321 48 ADTKKREAEQERREYEEKNEE 68 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666677766665
No 113
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=20.68 E-value=1.4e+02 Score=30.53 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHhch
Q 006626 62 IFGATVVVGVGLIAYQNGY 80 (638)
Q Consensus 62 ~~g~~~~~~~~~~ay~~g~ 80 (638)
||||.|++-++|+-..++|
T Consensus 163 FiGGIVL~LGv~aI~ff~~ 181 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLY 181 (186)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 5888888888888777777
No 114
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=20.67 E-value=2.8e+02 Score=21.71 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 006626 571 GIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITE-QGLTFLQS 630 (638)
Q Consensus 571 DveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEve-QAl~vL~A 630 (638)
+.+....++..++..||++.|+..+++.+.-. |.. ..-|..-+....... +--+.+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~-~~~~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNN-AEAYYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTH-HHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHHhCccHHHHHHH
Confidence 45667788888899999999988887666554 332 335555555555543 33343333
No 115
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.51 E-value=8.9e+02 Score=24.44 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=11.3
Q ss_pred ccccCCcHHHHHHHHHHHH
Q 006626 302 GYLSKDGKVVLDFLQAIHA 320 (638)
Q Consensus 302 ~~~~~~~k~~~d~~~AI~a 320 (638)
..|-.+-..++||++-|-+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (178)
T PRK14161 4 DNIENNEQTINDIAEEIVE 22 (178)
T ss_pred ccccccHHHHHHHHHhhhh
Confidence 3344456677888766543
No 116
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=1.4e+03 Score=26.56 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 368 ELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESK--LKNALELAKAEIAASIAREKVAQIEKMAEANLHINA 441 (638)
Q Consensus 368 efE~Er~kla~a~K~l~e~~EekLr~EL~~qe~E~e~r--L~kl~el~kaEi~~~VeqER~~rL~kL~EL~~~lqa 441 (638)
+-++|++-+....+.+......-|++.++-.+.+++.. +..+.-..+.++...++.||.....+|.+.+..++-
T Consensus 111 e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e~ 186 (438)
T COG4487 111 EKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEF 186 (438)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 44666666666666666666666666664443333332 222221123456666999999999999988766553
No 117
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.21 E-value=7.8e+02 Score=23.64 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006626 330 GRAFAEEKRALKEKYEKELRDS 351 (638)
Q Consensus 330 a~~f~eel~~l~~kyekeL~d~ 351 (638)
+.....+...+..+|+..|.+.
T Consensus 51 Ae~~~~ea~~~~~e~e~~l~~A 72 (164)
T PRK14473 51 AEKVREQLANAKRDYEAELAKA 72 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777773
Done!