Query 006626
Match_columns 638
No_of_seqs 173 out of 236
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 77.6 2.1E+02 0.0071 38.6 28.5 43 478-526 2088-2133(3245)
2 3oja_B Anopheles plasmodium-re 67.0 1.2E+02 0.0039 32.7 15.6 14 434-447 569-582 (597)
3 1f5n_A Interferon-induced guan 66.5 1.4E+02 0.0049 33.4 16.6 17 331-347 434-450 (592)
4 1f5n_A Interferon-induced guan 62.3 1.4E+02 0.0048 33.4 15.5 12 367-378 487-498 (592)
5 3ghg_A Fibrinogen alpha chain; 58.2 1.3E+02 0.0045 33.7 13.9 19 431-449 139-157 (562)
6 4dci_A Uncharacterized protein 55.1 82 0.0028 29.7 10.2 30 415-444 76-105 (150)
7 3vkg_A Dynein heavy chain, cyt 47.9 4.4E+02 0.015 35.6 18.5 25 418-442 2079-2103(3245)
8 2dfs_A Myosin-5A; myosin-V, in 45.3 3.7E+02 0.013 32.3 16.1 17 363-379 987-1003(1080)
9 4efa_E V-type proton ATPase su 45.0 2.2E+02 0.0076 27.5 16.5 41 334-380 14-54 (233)
10 2i1j_A Moesin; FERM, coiled-co 44.4 30 0.001 38.5 6.4 40 419-458 401-440 (575)
11 3ghg_A Fibrinogen alpha chain; 43.7 2.4E+02 0.0082 31.7 13.1 14 333-346 62-75 (562)
12 1nfn_A Apolipoprotein E3; lipi 40.6 2.5E+02 0.0086 26.8 12.4 39 311-349 33-72 (191)
13 2dba_A Smooth muscle cell asso 35.9 1.1E+02 0.0038 24.5 7.2 53 568-621 24-78 (148)
14 2pmr_A Uncharacterized protein 30.6 83 0.0029 27.1 5.6 35 573-617 40-74 (87)
15 3bee_A Putative YFRE protein; 28.5 60 0.002 26.8 4.3 49 568-620 39-87 (93)
16 3jsv_C NF-kappa-B essential mo 28.5 2.1E+02 0.007 25.3 7.7 18 358-375 45-62 (94)
17 2kc7_A BFR218_protein; tetratr 26.7 68 0.0023 24.6 4.2 29 569-597 31-60 (99)
18 3iox_A AGI/II, PA; alpha helix 24.7 7.5E+02 0.026 27.5 15.1 20 324-345 7-26 (497)
19 3ma5_A Tetratricopeptide repea 24.1 77 0.0026 25.2 4.1 26 571-596 40-65 (100)
20 3urz_A Uncharacterized protein 23.4 1.1E+02 0.0039 27.4 5.5 33 570-602 2-34 (208)
21 2crb_A Nuclear receptor bindin 21.2 72 0.0025 28.2 3.5 40 577-626 20-59 (97)
22 3upv_A Heat shock protein STI1 21.0 1.3E+02 0.0046 24.0 5.0 30 570-599 70-99 (126)
23 3o0z_A RHO-associated protein 20.3 5.8E+02 0.02 24.5 18.9 26 320-348 18-43 (168)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.59 E-value=2.1e+02 Score=38.57 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHhhcCCCCchhHHHHHhcCchhhhhcCCCCHH---HHHHHHH
Q 006626 478 PIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLL---QLNQKFD 526 (638)
Q Consensus 478 Pf~~EL~aLk~la~gl~~D~LV~aaLsSLP~~Aae~GV~T~a---qL~~RF~ 526 (638)
-+...+..|+.-...+.+|-|+.++. .+.-|.+|.. .|.+.|.
T Consensus 2088 RW~~~~~~l~~~~~~L~GD~LLaaaf------isY~G~f~~~~R~~l~~~W~ 2133 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTVVGDVVLASAF------LAYIGFFDQNFRTDLMRKWM 2133 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHTGGGSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHH------HHHcCCCCHHHHHHHHHHHH
Confidence 34444555443322223577776653 3456777765 5555554
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.04 E-value=1.2e+02 Score=32.70 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 006626 434 EANLHINALCMAFY 447 (638)
Q Consensus 434 EL~~~lqaL~~Av~ 447 (638)
.++.++++|...+.
T Consensus 569 ~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 569 LKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 33344444444433
No 3
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=66.52 E-value=1.4e+02 Score=33.37 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006626 331 RAFAEEKRALKEKYEKE 347 (638)
Q Consensus 331 ~~f~eel~~l~~kyeke 347 (638)
..|.++++.+..+|...
T Consensus 434 ~~~~~~~~~~~~~Y~~~ 450 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEE 450 (592)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35777788888888654
No 4
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=62.29 E-value=1.4e+02 Score=33.41 Aligned_cols=12 Identities=50% Similarity=0.664 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 006626 367 KELKRERAKAAA 378 (638)
Q Consensus 367 ~efE~Er~kla~ 378 (638)
++++.||+|-.+
T Consensus 487 k~~~~~~~~~e~ 498 (592)
T 1f5n_A 487 KEIEVERVKAES 498 (592)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555554433
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.20 E-value=1.3e+02 Score=33.66 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006626 431 KMAEANLHINALCMAFYAR 449 (638)
Q Consensus 431 kL~EL~~~lqaL~~Av~ar 449 (638)
.|+++..+|+.|+..|+..
T Consensus 139 nLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567778888888887764
No 6
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=55.07 E-value=82 Score=29.72 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 415 AEIAASIAREKVAQIEKMAEANLHINALCM 444 (638)
Q Consensus 415 aEi~~~VeqER~~rL~kL~EL~~~lqaL~~ 444 (638)
+.+..++++||..|+++...+..++++++.
T Consensus 76 ~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 76 ANIQQQVAGKRSELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999988888743
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.94 E-value=4.4e+02 Score=35.64 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 418 AASIAREKVAQIEKMAEANLHINAL 442 (638)
Q Consensus 418 ~~~VeqER~~rL~kL~EL~~~lqaL 442 (638)
-..+..||..=-+...++..++..|
T Consensus 2079 i~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2079 LDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhccccHHHHHHHHHHHHHhc
Confidence 4455555554444455555555443
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.27 E-value=3.7e+02 Score=32.27 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006626 363 AILEKELKRERAKAAAT 379 (638)
Q Consensus 363 a~l~~efE~Er~kla~a 379 (638)
..++++++..+..+...
T Consensus 987 ~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=44.99 E-value=2.2e+02 Score=27.47 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006626 334 AEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATI 380 (638)
Q Consensus 334 ~eel~~l~~kyekeL~d~aA~el~~~~~~a~l~~efE~Er~kla~a~ 380 (638)
+.++++|.....++=++ .|.|. ...-++||+.|+.++...-
T Consensus 14 ~~~i~~m~~fI~qEA~e-KA~EI-----~~kAeeE~~~ek~~~v~~~ 54 (233)
T 4efa_E 14 NDELNKMQAFIRKEAEE-KAKEI-----QLKADQEYEIEKTNIVRNE 54 (233)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 57777777665544333 22222 2334567888888876553
No 10
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.39 E-value=30 Score=38.55 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006626 419 ASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYF 458 (638)
Q Consensus 419 ~~VeqER~~rL~kL~EL~~~lqaL~~Av~arsE~~rqs~~ 458 (638)
..-+.||..--.++.+....+..|......|.++.++.+.
T Consensus 401 ~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 440 (575)
T 2i1j_A 401 NMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQE 440 (575)
T ss_dssp ----------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555567778888888888888877777665554
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.71 E-value=2.4e+02 Score=31.66 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 006626 333 FAEEKRALKEKYEK 346 (638)
Q Consensus 333 f~eel~~l~~kyek 346 (638)
|..-+.+|+.+|+.
T Consensus 62 ltkrINELKnqLEd 75 (562)
T 3ghg_A 62 FTNRINKLKNSLFE 75 (562)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666666653
No 12
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=40.61 E-value=2.5e+02 Score=26.82 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=24.4
Q ss_pred HHHHHHHHHH-HHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 006626 311 VLDFLQAIHA-AEQRQAELDGRAFAEEKRALKEKYEKELR 349 (638)
Q Consensus 311 ~~d~~~AI~a-a~k~Qae~Da~~f~eel~~l~~kyekeL~ 349 (638)
|-|++.-++. +.+.+..++.--|.+++..+...--..|+
T Consensus 33 ~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~ 72 (191)
T 1nfn_A 33 FWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELK 72 (191)
T ss_dssp HHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 6677777666 66666666555566666665555444444
No 13
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.85 E-value=1.1e+02 Score=24.47 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhH--HHHHHHHHHHHHHHH
Q 006626 568 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEE--IVFDWVRRARNRAIT 621 (638)
Q Consensus 568 ~GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~--lA~DWL~dAR~RLEv 621 (638)
...+....+..+..++..|+++.|+..++..+.-. |.. ...-|..-+......
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~ 78 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKL 78 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888886655544 332 345565555555543
No 14
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=30.60 E-value=83 Score=27.12 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 006626 573 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARN 617 (638)
Q Consensus 573 eSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~ 617 (638)
.+-+..++++|+.||+..|+..+. -+-.||+.+|.
T Consensus 40 ~~Y~~Da~~fl~kGD~v~Ala~is----------Ya~GwLDAlR~ 74 (87)
T 2pmr_A 40 LNYRDDSVYYLEKGDHITSFGCIT----------YAHGLLDSLRM 74 (87)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH----------HHHHHHHHHHH
Confidence 356778999999999999977773 35679998764
No 15
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.47 E-value=60 Score=26.82 Aligned_cols=49 Identities=6% Similarity=-0.203 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHH
Q 006626 568 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAI 620 (638)
Q Consensus 568 ~GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLE 620 (638)
+.+++.+.+-.+..+...||++.|+..|+..|.-. |. ..|....+..++
T Consensus 39 dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~-p~---~~~~~~i~~~I~ 87 (93)
T 3bee_A 39 EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN-DP---NLDRVTIIESIN 87 (93)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-CT---TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CccHHHHHHHHH
Confidence 45678888888999999999999999997666654 44 456555555443
No 16
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.46 E-value=2.1e+02 Score=25.26 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006626 358 RTEEAAILEKELKRERAK 375 (638)
Q Consensus 358 ~~~~~a~l~~efE~Er~k 375 (638)
.......++..|..||+.
T Consensus 45 Lk~Qv~IY~~DF~aERad 62 (94)
T 3jsv_C 45 LKAQADIYKADFQAERHA 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678889999999986
No 17
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=26.72 E-value=68 Score=24.61 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=18.3
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHh
Q 006626 569 NDGIE-SVICRVESYLREGKLAEAADALEE 597 (638)
Q Consensus 569 GdDve-SILARAE~~L~~GDLd~AarELEn 597 (638)
.++.. ..+.++..+...|+++.|+..++.
T Consensus 31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp SSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555 666666666677777777666643
No 18
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=24.69 E-value=7.5e+02 Score=27.45 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=10.4
Q ss_pred hhhhhcHHHHHHHHHHHHHHHH
Q 006626 324 RQAELDGRAFAEEKRALKEKYE 345 (638)
Q Consensus 324 ~Qae~Da~~f~eel~~l~~kye 345 (638)
+||++.+ |+.||.+.+..++
T Consensus 7 yq~~la~--yq~elarvqkana 26 (497)
T 3iox_A 7 YQAKLTA--YQTELARVQKANA 26 (497)
T ss_dssp HHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHH
Confidence 4544333 3666666555544
No 19
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=24.12 E-value=77 Score=25.19 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006626 571 GIESVICRVESYLREGKLAEAADALE 596 (638)
Q Consensus 571 DveSILARAE~~L~~GDLd~AarELE 596 (638)
++...+..+..+...|+++.|+..++
T Consensus 40 ~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 40 YVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555555555555555555553
No 20
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=23.42 E-value=1.1e+02 Score=27.43 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCh
Q 006626 570 DGIESVICRVESYLREGKLAEAADALEEGVRGS 602 (638)
Q Consensus 570 dDveSILARAE~~L~~GDLd~AarELEn~L~G~ 602 (638)
.+++..+.++..++..|+++.|+..++..+.-.
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 34 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN 34 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 578899999999999999999999996555544
No 21
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.21 E-value=72 Score=28.25 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 006626 577 CRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLT 626 (638)
Q Consensus 577 ARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~ 626 (638)
-||+.+|..|.++.|+.... -+.++|.+|-..-..+|++.
T Consensus 20 RrAe~ll~~gkydeAIech~----------kAa~yL~eAmkltqs~qa~~ 59 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHR----------KATTYLSEAMKLTESEQAHL 59 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------HHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHH----------HHHHHHHHHHHhhccHHHHH
Confidence 47899999999999965542 34555666555444444444
No 22
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=20.97 E-value=1.3e+02 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006626 570 DGIESVICRVESYLREGKLAEAADALEEGV 599 (638)
Q Consensus 570 dDveSILARAE~~L~~GDLd~AarELEn~L 599 (638)
+++...+.++..+...|+++.|+..++..+
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 457888999999999999999999886444
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.26 E-value=5.8e+02 Score=24.48 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=16.4
Q ss_pred HHHHhhhhhcHHHHHHHHHHHHHHHHHHH
Q 006626 320 AAEQRQAELDGRAFAEEKRALKEKYEKEL 348 (638)
Q Consensus 320 aa~k~Qae~Da~~f~eel~~l~~kyekeL 348 (638)
+.++.+++.|+. .-++|...++.+.+
T Consensus 18 ~n~kLk~EsE~~---~rlkK~~tEl~k~~ 43 (168)
T 3o0z_A 18 ANDLLRTESDTA---VRLRKSHTEMSKSI 43 (168)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH---HHHHHHHHHHHHHH
Confidence 366777777776 45566666655443
Done!