Query 006626
Match_columns 638
No_of_seqs 173 out of 236
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 04:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2crba1 a.7.16.1 (A:8-90) Nucl 25.7 25 0.0018 28.3 3.5 40 578-627 14-53 (83)
2 d1elwa_ a.118.8.1 (A:) Hop {Hu 20.6 81 0.0059 24.3 5.8 34 569-602 68-101 (117)
3 d2pmra1 a.8.11.1 (A:3-77) Unch 18.6 94 0.0069 24.3 5.5 34 573-616 36-69 (75)
4 d2fbna1 a.118.8.1 (A:22-174) P 14.2 1.4E+02 0.01 24.0 5.9 51 569-620 98-149 (153)
5 d1sr2a_ a.24.10.4 (A:) Sensor- 12.6 89 0.0065 24.9 4.1 50 570-621 42-91 (116)
6 d2c2la1 a.118.8.1 (A:24-224) S 12.5 1.9E+02 0.014 22.9 6.3 34 567-600 67-100 (201)
7 d1elwa_ a.118.8.1 (A:) Hop {Hu 11.7 1.5E+02 0.011 22.6 5.2 66 568-635 33-98 (117)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 11.5 59 0.0043 20.8 1.9 16 62-77 2-19 (27)
9 d1vp7a_ a.7.13.1 (A:) Exonucle 11.0 1.2E+02 0.0089 22.9 4.1 49 570-621 6-59 (68)
10 d1elra_ a.118.8.1 (A:) Hop {Hu 10.9 95 0.0069 24.3 3.7 31 569-599 35-65 (128)
No 1
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.72 E-value=25 Score=28.35 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006626 578 RVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTF 627 (638)
Q Consensus 578 RAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~v 627 (638)
|||.+|..|.+|.|+.+.. -+.++|.+|=.--...+++.-
T Consensus 14 rAer~l~~~rydeAIech~----------kA~~yl~eA~klt~s~~~l~S 53 (83)
T d2crba1 14 RADRLLAAGKYEEAISCHR----------KATTYLSEAMKLTESEQAHLS 53 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHH----------HHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH----------HHHHHHHHHHhCCCcHHHHHH
Confidence 6899999999999966553 355666666554444444443
No 2
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62 E-value=81 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCh
Q 006626 569 NDGIESVICRVESYLREGKLAEAADALEEGVRGS 602 (638)
Q Consensus 569 GdDveSILARAE~~L~~GDLd~AarELEn~L~G~ 602 (638)
.+++.+.+.++..++..|+++.|+..++..+.-.
T Consensus 68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999998777665
No 3
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.56 E-value=94 Score=24.33 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHH
Q 006626 573 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRAR 616 (638)
Q Consensus 573 eSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR 616 (638)
++-++-+++++..||+..|...+ | -+..||+..|
T Consensus 36 ~~Y~~Da~~f~~~gd~v~A~~~i-~---------YA~g~lDAlr 69 (75)
T d2pmra1 36 LNYRDDSVYYLEKGDHITSFGCI-T---------YAHGLLDSLR 69 (75)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-H---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHH-H---------HHHHHHHHHH
Confidence 35677789999999999997777 2 3567887755
No 4
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=14.24 E-value=1.4e+02 Score=23.99 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhh-HHHHHHHHHHHHHHH
Q 006626 569 NDGIESVICRVESYLREGKLAEAADALEEGVRGSQAE-EIVFDWVRRARNRAI 620 (638)
Q Consensus 569 GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar-~lA~DWL~dAR~RLE 620 (638)
.+++.+...++..+...|+++.|+..++..|.-. |. .-+..=+..++.+|.
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999997666554 32 112223444555543
No 5
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.59 E-value=89 Score=24.94 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 006626 570 DGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 621 (638)
Q Consensus 570 dDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEv 621 (638)
+++..-++..+.++..+|++.+.+.. -.|+|. +..+-...+.+.=..||.
T Consensus 42 ~~~p~~l~~L~~a~~~~D~~~l~~~a-H~LKGs-~~~~Ga~~l~~~~~~lE~ 91 (116)
T d1sr2a_ 42 DTVPDDVKRLYTEAATSDFAALAQTA-HRLKGV-FAMLNLVPGKQLCETLEH 91 (116)
T ss_dssp TTHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHH-HHHHTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHCcCHHHHHHHH-HHHHHH-HHHcCchHHHHHHHHHHH
Confidence 35667899999999999999999999 899998 777777777766666654
No 6
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.50 E-value=1.9e+02 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006626 567 QANDGIESVICRVESYLREGKLAEAADALEEGVR 600 (638)
Q Consensus 567 ~~GdDveSILARAE~~L~~GDLd~AarELEn~L~ 600 (638)
...+.+.+.+.++..++..|+++.|+..++..|.
T Consensus 67 l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567888999999999999999999998864443
No 7
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.71 E-value=1.5e+02 Score=22.57 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006626 568 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCL 635 (638)
Q Consensus 568 ~GdDveSILARAE~~L~~GDLd~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEveQAl~vL~A~Aaa~ 635 (638)
...++.....++..++..|+++.|+..++..+.-- |.. ..-|..-++......+--+.+..+-.++
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 98 (117)
T d1elwa_ 33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDW-GKGYSRKAAALEFLNRFEEAKRTYEEGL 98 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchhhhhcccccccccccccccchhhhhHHHhc-cch-hhHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45678899999999999999999999887555543 433 3457777777776666555555554443
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.54 E-value=59 Score=20.81 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=10.2
Q ss_pred hhhhHH--HHHHHHHHHH
Q 006626 62 IFGATV--VVGVGLIAYQ 77 (638)
Q Consensus 62 ~~g~~~--~~~~~~~ay~ 77 (638)
++|-++ ++|-+.||||
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 355444 3567788997
No 9
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=10.96 E-value=1.2e+02 Score=22.87 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHH---HHhcCC--HHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 006626 570 DGIESVICRVES---YLREGK--LAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 621 (638)
Q Consensus 570 dDveSILARAE~---~L~~GD--Ld~AarELEn~L~G~~Ar~lA~DWL~dAR~RLEv 621 (638)
.+.+..+.|-+. .|+.|+ |+.++...+. |-.=..-|..||++|+.++++
T Consensus 6 ~sfEe~l~~LE~IV~~LE~g~l~Leesl~~ye~---G~~L~~~C~~~L~~ae~ki~~ 59 (68)
T d1vp7a_ 6 QDFETALAELESLVSAMENGTLPLEQSLSAYRR---GVELARVCQDRLAQAEQQVKV 59 (68)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666554 456785 8999999973 332467899999999999765
No 10
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.94 E-value=95 Score=24.26 Aligned_cols=31 Identities=10% Similarity=0.313 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006626 569 NDGIESVICRVESYLREGKLAEAADALEEGV 599 (638)
Q Consensus 569 GdDveSILARAE~~L~~GDLd~AarELEn~L 599 (638)
.+++.....++..+...|+++.|+...+..|
T Consensus 35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 4678899999999999999999999885433
Done!