BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006627
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 410 DVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICM----WNAMMAGYGMHGCGEEA---- 461
+ +LK L DM +K GDV A RL+ EA + + +N ++ + E+
Sbjct: 26 EALLKQKL-DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84
Query: 462 -----LIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFD--KMVHGLGLVPKIE 514
F M V PN TF N A + + FD K + G+ P++
Sbjct: 85 GLSRGFDIFKQMIVDKVVPNEATFT---NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141
Query: 515 HYGCMVDLLGRAGLLDEAHEMIKSM 539
YG + R G D+A+E+ M
Sbjct: 142 SYGPALFGFCRKGDADKAYEVDAHM 166
>pdb|4AUE|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 717
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 380 VGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTAL--VDMYAKCGDVNGAYRLFSEA 437
VG+L+ +E+ AL+ L T +EK GL V V+ +T VD D G F
Sbjct: 571 VGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREGVDQTYSTADATG----FDGV 626
Query: 438 IYRD-ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI 478
+ D A A + G L FVD R G KP G+
Sbjct: 627 VVVDGAAALFASTASSPLFPTG-RPLQIFVDAYRWG-KPVGV 666
>pdb|4AUN|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|E Chain E, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|F Chain F, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|G Chain G, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|H Chain H, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 380 VGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTAL--VDMYAKCGDVNGAYRLFSEA 437
VG+L+ +E+ AL+ L T +EK GL V V+ +T VD D G F
Sbjct: 573 VGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREGVDQTYSTADATG----FDGV 628
Query: 438 IYRD-ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI 478
+ D A A + G L FVD R G KP G+
Sbjct: 629 VVVDGAAALFASTASSPLFPTG-RPLQIFVDAYRWG-KPVGV 668
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 380 VGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTAL--VDMYAKCGDVNGAYRLFSEA 437
VG+L+ +E+ AL+ L T +EK GL V V+ +T VD D G F
Sbjct: 573 VGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREGVDQTYSTADATG----FDGV 628
Query: 438 IYRD-ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI 478
+ D A A + G L FVD R G KP G+
Sbjct: 629 VVVDGAAALFASTASSPLFPTG-RPLQIFVDAYRWG-KPVGV 668
>pdb|4AUL|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 380 VGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTAL--VDMYAKCGDVNGAYRLFSEA 437
VG+L+ +E+ AL+ L T +EK GL V V+ +T VD D G F
Sbjct: 573 VGILATTSESSALDQAAQLRTRLEKDGLVVTVVAETLREGVDQTYSTADATG----FDGV 628
Query: 438 IYRD-ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI 478
+ D A A + G L FVD R G KP G+
Sbjct: 629 VVVDGAAALFASTASSPLFPTG-RPLQIFVDAYRWG-KPVGV 668
>pdb|1J22|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain, Selenomet
Derivative
pdb|1J23|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain
pdb|1J24|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain, Ca Cocrystal
pdb|1J25|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain, Mn Cocrystal
Length = 143
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 526 AGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQI 571
GL D+ + K RP MIV G+L +H N G IAA +
Sbjct: 62 GGLFDQVKRL-KEAYSRPIMIVEGSLYGIRNVHPNAIRGAIAAVTV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,462,661
Number of Sequences: 62578
Number of extensions: 750229
Number of successful extensions: 1442
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 9
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)