Query 006627
Match_columns 638
No_of_seqs 608 out of 3314
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 12:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.1E-94 4.5E-99 786.2 72.3 631 4-638 114-750 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.3E-77 9.4E-82 650.2 65.8 571 37-614 52-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 7.2E-74 1.6E-78 610.1 60.8 501 135-637 85-586 (697)
4 PLN03218 maturation of RBCL 1; 100.0 7.3E-67 1.6E-71 557.2 54.3 525 7-546 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.8E-66 6E-71 551.9 53.4 470 37-511 88-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 8.8E-64 1.9E-68 533.6 56.8 501 68-573 367-908 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-37 1.1E-41 344.5 63.6 577 16-606 301-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-35 2.3E-40 333.7 63.8 591 5-611 222-869 (899)
9 PRK11447 cellulose synthase su 100.0 4.7E-27 1E-31 263.2 62.3 580 9-607 61-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.6E-26 3.4E-31 259.0 58.7 587 13-614 31-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5.4E-23 1.2E-27 219.8 61.5 558 20-609 54-707 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.9E-22 4E-27 215.7 56.9 585 5-611 73-743 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.9E-21 6.3E-26 183.2 36.2 463 141-619 52-539 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 7.9E-20 1.7E-24 192.7 42.0 420 139-608 129-571 (615)
15 KOG4626 O-linked N-acetylgluco 99.9 5.9E-21 1.3E-25 181.2 28.5 415 180-609 56-486 (966)
16 KOG2002 TPR-containing nuclear 99.9 5.5E-18 1.2E-22 169.8 46.3 516 83-607 176-744 (1018)
17 KOG2002 TPR-containing nuclear 99.9 6.6E-18 1.4E-22 169.3 46.0 573 26-611 146-801 (1018)
18 PRK11788 tetratricopeptide rep 99.9 5.9E-20 1.3E-24 184.2 28.6 293 320-616 45-355 (389)
19 PRK15174 Vi polysaccharide exp 99.9 5.2E-18 1.1E-22 178.2 39.7 371 220-609 16-404 (656)
20 PRK15174 Vi polysaccharide exp 99.8 1E-17 2.2E-22 176.0 37.8 356 251-613 16-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 5.3E-17 1.1E-21 174.4 42.6 387 215-610 21-458 (765)
22 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.8E-21 171.5 44.7 367 209-582 49-464 (765)
23 PRK11788 tetratricopeptide rep 99.8 9.9E-18 2.1E-22 168.1 31.6 294 247-573 42-346 (389)
24 PRK14574 hmsH outer membrane p 99.8 8.1E-16 1.8E-20 161.8 46.4 437 81-582 44-521 (822)
25 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-16 3.8E-21 167.4 41.3 225 347-578 337-575 (615)
26 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.3E-19 132.2 40.1 430 47-539 126-587 (625)
27 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.7E-19 152.9 44.8 405 20-470 44-512 (822)
28 KOG2076 RNA polymerase III tra 99.8 1.3E-13 2.8E-18 138.1 47.5 587 19-609 148-850 (895)
29 KOG0495 HAT repeat protein [RN 99.8 8.9E-13 1.9E-17 127.1 50.9 506 86-610 361-882 (913)
30 KOG2076 RNA polymerase III tra 99.8 1.2E-13 2.7E-18 138.2 45.3 594 3-604 166-891 (895)
31 KOG0495 HAT repeat protein [RN 99.8 8E-13 1.7E-17 127.4 48.3 536 51-610 266-848 (913)
32 KOG2003 TPR repeat-containing 99.8 1.5E-15 3.3E-20 139.5 28.6 475 78-595 208-710 (840)
33 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.5E-19 131.3 35.4 310 9-323 115-481 (625)
34 KOG2003 TPR repeat-containing 99.7 4.5E-14 9.8E-19 130.0 29.0 437 143-609 207-690 (840)
35 KOG0547 Translocase of outer m 99.7 1.9E-13 4.1E-18 127.3 31.4 212 388-605 338-563 (606)
36 KOG4318 Bicoid mRNA stability 99.7 6.1E-13 1.3E-17 132.6 36.4 534 57-612 11-598 (1088)
37 PF13429 TPR_15: Tetratricopep 99.7 1.5E-16 3.3E-21 150.7 10.6 255 348-606 15-275 (280)
38 KOG4318 Bicoid mRNA stability 99.6 7.3E-12 1.6E-16 125.1 38.3 584 6-614 20-814 (1088)
39 KOG2047 mRNA splicing factor [ 99.6 3.8E-10 8.2E-15 109.2 46.8 528 14-598 106-713 (835)
40 KOG1915 Cell cycle control pro 99.6 9.5E-11 2.1E-15 109.2 37.6 458 104-607 71-584 (677)
41 KOG1915 Cell cycle control pro 99.6 4.4E-11 9.5E-16 111.4 35.1 397 212-617 76-509 (677)
42 PRK10747 putative protoheme IX 99.6 2.7E-12 5.9E-17 127.3 28.8 275 323-607 97-389 (398)
43 KOG1126 DNA-binding cell divis 99.6 4.1E-13 8.9E-18 130.4 22.0 277 325-610 334-622 (638)
44 PRK10747 putative protoheme IX 99.6 3.2E-12 6.9E-17 126.8 28.6 147 423-575 241-391 (398)
45 KOG1155 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 108.6 33.6 254 349-607 235-494 (559)
46 TIGR00540 hemY_coli hemY prote 99.5 1.5E-11 3.2E-16 122.8 29.6 277 323-606 97-397 (409)
47 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.3E-17 127.6 20.2 244 355-608 333-586 (638)
48 TIGR00540 hemY_coli hemY prote 99.5 4.4E-11 9.5E-16 119.5 31.4 253 318-573 126-398 (409)
49 KOG1155 Anaphase-promoting com 99.5 1.9E-10 4.2E-15 107.0 32.0 353 208-573 163-535 (559)
50 KOG1173 Anaphase-promoting com 99.5 3.4E-10 7.5E-15 108.1 33.1 263 340-607 243-517 (611)
51 PF13429 TPR_15: Tetratricopep 99.5 3.2E-13 6.9E-18 128.0 12.9 254 247-504 15-275 (280)
52 TIGR02521 type_IV_pilW type IV 99.5 1.3E-11 2.9E-16 114.3 22.2 198 410-608 30-232 (234)
53 KOG3785 Uncharacterized conser 99.5 2.4E-10 5.1E-15 102.6 28.4 323 213-550 155-499 (557)
54 KOG0547 Translocase of outer m 99.5 6.5E-10 1.4E-14 104.2 32.0 406 139-577 117-569 (606)
55 KOG1173 Anaphase-promoting com 99.4 9.6E-10 2.1E-14 105.2 31.2 282 305-589 239-533 (611)
56 COG2956 Predicted N-acetylgluc 99.4 1.4E-10 3E-15 102.9 23.3 290 323-615 48-354 (389)
57 KOG4162 Predicted calmodulin-b 99.4 5.1E-09 1.1E-13 104.0 36.4 493 48-607 239-782 (799)
58 COG3071 HemY Uncharacterized e 99.4 1.3E-09 2.7E-14 100.2 29.4 118 253-371 97-217 (400)
59 COG3071 HemY Uncharacterized e 99.4 8.6E-10 1.9E-14 101.2 28.3 278 288-573 97-389 (400)
60 KOG2047 mRNA splicing factor [ 99.4 4.4E-08 9.6E-13 95.3 41.0 525 26-607 91-686 (835)
61 KOG2376 Signal recognition par 99.4 1.4E-08 2.9E-13 98.0 35.6 436 144-603 19-515 (652)
62 KOG0985 Vesicle coat protein c 99.4 6.4E-08 1.4E-12 98.7 41.1 541 15-605 611-1246(1666)
63 KOG1174 Anaphase-promoting com 99.4 1.6E-08 3.4E-13 93.1 33.6 271 304-580 226-506 (564)
64 KOG1156 N-terminal acetyltrans 99.4 4.2E-07 9E-12 89.0 44.9 586 9-608 7-688 (700)
65 KOG1129 TPR repeat-containing 99.4 4.7E-11 1E-15 105.9 16.3 223 382-609 229-459 (478)
66 COG3063 PilF Tfp pilus assembl 99.3 1.5E-10 3.1E-15 98.2 17.4 163 445-610 38-204 (250)
67 COG2956 Predicted N-acetylgluc 99.3 2.5E-09 5.5E-14 95.2 25.1 286 253-572 48-345 (389)
68 KOG1156 N-terminal acetyltrans 99.3 1.3E-07 2.9E-12 92.4 37.7 462 81-607 17-510 (700)
69 PRK12370 invasion protein regu 99.3 1E-09 2.2E-14 114.1 25.2 244 356-609 276-536 (553)
70 KOG1129 TPR repeat-containing 99.3 1.2E-10 2.5E-15 103.4 14.6 236 345-585 227-469 (478)
71 KOG3785 Uncharacterized conser 99.3 4.5E-07 9.8E-12 82.0 36.9 217 289-516 268-497 (557)
72 KOG0985 Vesicle coat protein c 99.3 4.9E-07 1.1E-11 92.5 41.1 465 81-605 848-1338(1666)
73 PRK12370 invasion protein regu 99.3 7.3E-10 1.6E-14 115.1 22.3 211 390-607 275-501 (553)
74 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.6E-14 106.1 24.2 230 377-606 200-477 (508)
75 KOG1174 Anaphase-promoting com 99.3 2.9E-08 6.3E-13 91.4 29.2 392 208-613 96-505 (564)
76 TIGR02521 type_IV_pilW type IV 99.2 2.1E-09 4.5E-14 99.5 22.4 199 342-575 32-233 (234)
77 PF12569 NARP1: NMDA receptor- 99.2 1.1E-07 2.3E-12 95.5 35.1 48 557-604 468-516 (517)
78 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-09 3.5E-14 102.8 21.0 216 353-576 38-267 (296)
79 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.5E-16 79.9 6.0 50 135-184 1-50 (50)
80 KOG3616 Selective LIM binding 99.2 5.6E-07 1.2E-11 89.0 38.0 257 316-606 738-1022(1636)
81 PF13041 PPR_2: PPR repeat fam 99.2 3E-11 6.6E-16 79.6 6.1 50 238-287 1-50 (50)
82 KOG3616 Selective LIM binding 99.2 9.6E-07 2.1E-11 87.5 39.2 312 248-603 740-1071(1636)
83 KOG3617 WD40 and TPR repeat-co 99.2 2.6E-07 5.6E-12 92.5 33.5 275 6-359 720-1010(1416)
84 KOG2376 Signal recognition par 99.1 1.4E-06 2.9E-11 84.6 35.4 117 44-167 20-140 (652)
85 COG3063 PilF Tfp pilus assembl 99.1 2.3E-08 4.9E-13 85.1 20.6 192 384-578 43-240 (250)
86 PRK11189 lipoprotein NlpI; Pro 99.1 3E-08 6.6E-13 94.1 24.3 215 390-613 40-270 (296)
87 KOG4340 Uncharacterized conser 99.1 1.1E-07 2.5E-12 83.7 25.1 384 213-607 14-442 (459)
88 PF12569 NARP1: NMDA receptor- 99.1 3.5E-08 7.6E-13 98.9 25.2 148 460-610 129-293 (517)
89 KOG1840 Kinesin light chain [C 99.1 8.3E-08 1.8E-12 95.0 26.9 234 312-573 201-478 (508)
90 KOG0624 dsRNA-activated protei 99.1 3E-07 6.5E-12 82.8 25.3 293 314-612 42-374 (504)
91 KOG0548 Molecular co-chaperone 99.0 1.2E-06 2.6E-11 84.1 30.1 237 344-592 227-473 (539)
92 KOG1125 TPR repeat-containing 99.0 9.4E-09 2E-13 99.0 16.2 215 387-607 296-526 (579)
93 PF04733 Coatomer_E: Coatomer 99.0 6.3E-09 1.4E-13 97.0 14.9 251 317-579 8-270 (290)
94 KOG4162 Predicted calmodulin-b 99.0 1.1E-06 2.3E-11 88.0 30.4 457 48-580 296-789 (799)
95 KOG1127 TPR repeat-containing 99.0 1.3E-05 2.8E-10 82.6 36.6 570 10-591 492-1192(1238)
96 KOG1127 TPR repeat-containing 99.0 4.4E-06 9.5E-11 86.0 32.8 542 51-605 473-1101(1238)
97 KOG3617 WD40 and TPR repeat-co 99.0 3.4E-05 7.3E-10 77.9 38.1 197 9-234 756-992 (1416)
98 PRK10370 formate-dependent nit 98.9 6.7E-08 1.5E-12 85.1 17.3 123 490-614 52-179 (198)
99 PF04733 Coatomer_E: Coatomer 98.9 3.4E-08 7.3E-13 92.2 15.9 246 349-609 9-266 (290)
100 TIGR03302 OM_YfiO outer membra 98.9 1E-07 2.2E-12 87.9 18.0 181 409-609 31-233 (235)
101 KOG4340 Uncharacterized conser 98.9 1.7E-06 3.7E-11 76.5 23.5 311 110-438 14-337 (459)
102 cd05804 StaR_like StaR_like; a 98.9 3.8E-06 8.3E-11 83.1 28.8 256 350-608 52-336 (355)
103 KOG0548 Molecular co-chaperone 98.8 5.4E-06 1.2E-10 79.8 27.0 425 145-610 10-457 (539)
104 KOG0624 dsRNA-activated protei 98.8 4.3E-06 9.4E-11 75.6 23.8 311 244-583 42-379 (504)
105 PLN02789 farnesyltranstransfer 98.8 2.3E-06 5E-11 81.1 23.4 213 390-606 51-300 (320)
106 PRK04841 transcriptional regul 98.8 3.2E-05 7E-10 87.0 35.8 257 351-607 462-759 (903)
107 PRK15359 type III secretion sy 98.8 1.8E-07 3.9E-12 77.9 13.2 108 480-589 27-136 (144)
108 PRK15359 type III secretion sy 98.7 1.9E-07 4.1E-12 77.8 12.4 108 498-610 14-123 (144)
109 COG5010 TadD Flp pilus assembl 98.7 1.1E-06 2.4E-11 76.9 16.3 155 446-603 70-226 (257)
110 cd05804 StaR_like StaR_like; a 98.7 3.9E-05 8.5E-10 75.9 29.2 266 342-609 7-294 (355)
111 KOG1070 rRNA processing protei 98.7 2.4E-06 5.2E-11 90.8 20.5 199 408-611 1455-1666(1710)
112 KOG1128 Uncharacterized conser 98.7 9.4E-07 2E-11 87.9 16.4 187 412-607 399-615 (777)
113 KOG1128 Uncharacterized conser 98.7 3E-06 6.5E-11 84.4 19.6 227 345-588 402-632 (777)
114 KOG1125 TPR repeat-containing 98.6 2.1E-06 4.5E-11 83.3 17.5 247 350-601 294-564 (579)
115 COG5010 TadD Flp pilus assembl 98.6 4.3E-06 9.2E-11 73.3 17.4 154 415-571 70-228 (257)
116 PRK15363 pathogenicity island 98.6 5.2E-07 1.1E-11 73.4 10.7 96 513-608 35-132 (157)
117 PLN02789 farnesyltranstransfer 98.6 3.2E-06 7E-11 80.1 17.6 189 419-610 45-252 (320)
118 PRK10370 formate-dependent nit 98.6 6.1E-06 1.3E-10 72.8 18.2 155 419-584 24-183 (198)
119 KOG1914 mRNA cleavage and poly 98.6 0.00084 1.8E-08 65.2 37.5 173 357-530 347-527 (656)
120 COG4783 Putative Zn-dependent 98.6 1.1E-05 2.3E-10 77.1 19.8 114 487-602 316-431 (484)
121 PRK15179 Vi polysaccharide bio 98.6 1E-05 2.2E-10 84.8 21.2 130 474-606 83-215 (694)
122 TIGR02552 LcrH_SycD type III s 98.5 1.2E-06 2.6E-11 72.8 11.7 94 515-608 19-114 (135)
123 KOG3060 Uncharacterized conser 98.5 3.4E-05 7.3E-10 67.1 20.0 197 354-585 25-231 (289)
124 PRK14720 transcript cleavage f 98.5 2E-05 4.2E-10 83.5 22.3 233 309-590 30-268 (906)
125 PRK04841 transcriptional regul 98.5 0.00021 4.6E-09 80.5 32.3 286 82-367 385-717 (903)
126 KOG3060 Uncharacterized conser 98.5 5.1E-06 1.1E-10 72.0 14.0 168 445-616 55-228 (289)
127 KOG3081 Vesicle coat complex C 98.5 0.00012 2.5E-09 64.4 21.6 250 319-579 17-276 (299)
128 TIGR03302 OM_YfiO outer membra 98.4 1.2E-05 2.7E-10 74.1 17.0 182 374-577 31-235 (235)
129 TIGR02552 LcrH_SycD type III s 98.4 7E-06 1.5E-10 68.1 13.1 116 464-583 5-123 (135)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 6.1E-06 1.3E-10 79.8 14.0 123 479-606 171-295 (395)
131 PF12854 PPR_1: PPR repeat 98.4 6E-07 1.3E-11 52.8 4.1 32 406-437 2-33 (34)
132 PRK15179 Vi polysaccharide bio 98.4 0.00011 2.5E-09 77.1 23.6 132 442-577 86-220 (694)
133 PF12854 PPR_1: PPR repeat 98.4 5.8E-07 1.3E-11 52.8 3.9 32 305-336 2-33 (34)
134 KOG3081 Vesicle coat complex C 98.4 0.00012 2.6E-09 64.4 19.3 244 348-607 15-270 (299)
135 COG4783 Putative Zn-dependent 98.3 8.2E-05 1.8E-09 71.3 19.7 142 451-613 315-459 (484)
136 PRK14720 transcript cleavage f 98.3 8.9E-05 1.9E-09 78.7 21.4 206 378-614 33-258 (906)
137 KOG1070 rRNA processing protei 98.3 0.00015 3.2E-09 77.9 22.3 220 277-497 1460-1691(1710)
138 KOG1914 mRNA cleavage and poly 98.3 0.0047 1E-07 60.2 33.1 159 444-605 368-536 (656)
139 PF13414 TPR_11: TPR repeat; P 98.3 2.2E-06 4.7E-11 61.2 6.1 65 544-608 2-67 (69)
140 PF09976 TPR_21: Tetratricopep 98.3 3.1E-05 6.7E-10 64.9 13.8 115 490-605 24-144 (145)
141 PF13432 TPR_16: Tetratricopep 98.3 2.9E-06 6.2E-11 59.7 6.3 60 551-610 3-62 (65)
142 PF12895 Apc3: Anaphase-promot 98.2 1.4E-06 3E-11 65.1 4.5 78 526-604 2-83 (84)
143 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.3E-05 2.9E-10 64.7 10.7 96 515-610 4-107 (119)
144 KOG0553 TPR repeat-containing 98.2 2.4E-05 5.3E-10 70.0 12.2 108 487-596 91-200 (304)
145 COG4235 Cytochrome c biogenesi 98.2 2.3E-05 5E-10 70.7 12.1 111 508-618 151-266 (287)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.9E-05 1.1E-09 73.6 15.3 127 413-542 171-297 (395)
147 cd00189 TPR Tetratricopeptide 98.2 2.1E-05 4.5E-10 60.5 10.0 94 516-609 3-98 (100)
148 KOG2053 Mitochondrial inherita 98.2 0.015 3.2E-07 60.5 38.1 159 380-543 440-609 (932)
149 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.3E-09 59.4 15.3 124 446-572 16-145 (145)
150 COG4700 Uncharacterized protei 98.1 0.00045 9.7E-09 57.2 15.8 141 473-615 85-229 (251)
151 KOG0553 TPR repeat-containing 98.0 1.7E-05 3.7E-10 71.0 7.9 88 520-607 88-177 (304)
152 KOG0550 Molecular chaperone (D 98.0 0.00025 5.5E-09 66.3 15.5 155 450-608 177-350 (486)
153 TIGR00756 PPR pentatricopeptid 98.0 9.9E-06 2.1E-10 48.5 4.4 35 241-275 1-35 (35)
154 PLN03088 SGT1, suppressor of 98.0 4.7E-05 1E-09 74.2 11.2 109 482-592 7-117 (356)
155 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 48.1 4.1 34 137-170 1-34 (34)
156 TIGR02795 tol_pal_ybgF tol-pal 98.0 9E-05 1.9E-09 59.8 11.0 105 479-583 4-114 (119)
157 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.4E-10 48.3 4.3 34 38-71 2-35 (35)
158 PRK15331 chaperone protein Sic 98.0 6.7E-05 1.4E-09 61.6 9.5 90 518-607 42-133 (165)
159 PF14559 TPR_19: Tetratricopep 98.0 1.2E-05 2.6E-10 57.1 4.5 55 556-610 2-56 (68)
160 PRK02603 photosystem I assembl 98.0 0.0001 2.2E-09 63.8 11.1 95 515-609 37-150 (172)
161 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 47.2 4.2 33 241-273 2-34 (34)
162 PF13371 TPR_9: Tetratricopept 97.9 2.9E-05 6.3E-10 56.1 6.4 59 552-610 2-60 (73)
163 PLN03088 SGT1, suppressor of 97.9 0.00013 2.9E-09 71.0 12.7 102 448-552 8-110 (356)
164 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.024 5.2E-07 54.1 27.5 126 378-505 399-530 (660)
165 COG4700 Uncharacterized protei 97.9 0.00032 7E-09 58.0 12.0 113 501-613 77-194 (251)
166 KOG2053 Mitochondrial inherita 97.9 0.049 1.1E-06 56.8 40.8 513 47-606 20-606 (932)
167 CHL00033 ycf3 photosystem I as 97.9 0.00013 2.9E-09 62.9 10.4 93 513-605 35-139 (168)
168 PRK10153 DNA-binding transcrip 97.9 0.00071 1.5E-08 69.0 16.9 121 458-580 358-488 (517)
169 COG3898 Uncharacterized membra 97.9 0.025 5.5E-07 53.0 25.1 242 352-607 131-391 (531)
170 PF05843 Suf: Suppressor of fo 97.8 0.00033 7.2E-09 65.8 13.1 133 444-579 3-141 (280)
171 PF13432 TPR_16: Tetratricopep 97.8 7.3E-05 1.6E-09 52.4 6.0 61 519-579 3-65 (65)
172 cd00189 TPR Tetratricopeptide 97.8 0.00028 6E-09 54.1 9.9 92 483-576 6-99 (100)
173 PF13431 TPR_17: Tetratricopep 97.8 1.9E-05 4.2E-10 46.3 2.4 33 568-600 2-34 (34)
174 PF04840 Vps16_C: Vps16, C-ter 97.8 0.039 8.5E-07 52.5 27.3 106 312-433 179-284 (319)
175 PRK02603 photosystem I assembl 97.7 0.00087 1.9E-08 58.1 13.5 129 443-594 36-166 (172)
176 PRK10803 tol-pal system protei 97.7 0.00024 5.1E-09 65.4 9.9 87 524-610 154-248 (263)
177 PRK10866 outer membrane biogen 97.7 0.0056 1.2E-07 56.0 18.2 173 417-606 38-239 (243)
178 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.5E-09 54.6 5.9 80 455-538 2-83 (84)
179 PF07079 DUF1347: Protein of u 97.7 0.064 1.4E-06 51.6 40.3 202 341-550 298-530 (549)
180 PF14559 TPR_19: Tetratricopep 97.6 7.7E-05 1.7E-09 53.0 4.2 62 525-586 3-66 (68)
181 PRK10153 DNA-binding transcrip 97.6 0.0025 5.3E-08 65.1 16.2 135 472-610 332-484 (517)
182 PF14938 SNAP: Soluble NSF att 97.6 0.0036 7.8E-08 59.1 16.0 147 417-576 100-268 (282)
183 PF01535 PPR: PPR repeat; Int 97.6 0.00012 2.6E-09 42.2 3.6 31 241-271 1-31 (31)
184 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.3E-09 42.4 3.3 31 138-168 1-31 (31)
185 CHL00033 ycf3 photosystem I as 97.5 0.0036 7.8E-08 54.0 14.3 62 444-505 37-100 (168)
186 PF12688 TPR_5: Tetratrico pep 97.5 0.0012 2.7E-08 52.1 10.1 85 520-604 8-100 (120)
187 KOG1538 Uncharacterized conser 97.5 0.02 4.3E-07 57.2 20.2 20 554-573 826-845 (1081)
188 PF04840 Vps16_C: Vps16, C-ter 97.5 0.09 2E-06 50.1 28.7 110 413-539 179-288 (319)
189 PF07079 DUF1347: Protein of u 97.5 0.097 2.1E-06 50.4 35.1 116 487-605 389-521 (549)
190 PRK15363 pathogenicity island 97.5 0.012 2.6E-07 48.4 15.6 91 446-539 39-129 (157)
191 PF08579 RPM2: Mitochondrial r 97.5 0.0011 2.3E-08 50.3 8.7 80 243-322 28-116 (120)
192 PF13414 TPR_11: TPR repeat; P 97.5 0.00023 5E-09 50.6 5.0 64 513-576 3-69 (69)
193 PF05843 Suf: Suppressor of fo 97.5 0.0018 4E-08 60.8 12.1 131 478-610 2-138 (280)
194 PF13281 DUF4071: Domain of un 97.4 0.021 4.6E-07 54.7 18.8 161 416-579 146-339 (374)
195 PF13428 TPR_14: Tetratricopep 97.4 0.00021 4.7E-09 45.1 3.8 42 546-587 2-43 (44)
196 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00068 1.5E-08 65.4 8.4 65 544-608 74-141 (453)
197 COG4235 Cytochrome c biogenesi 97.4 0.0082 1.8E-07 54.7 14.3 117 464-583 144-265 (287)
198 PF10037 MRP-S27: Mitochondria 97.3 0.0028 6E-08 62.0 11.9 118 307-424 63-186 (429)
199 PF10037 MRP-S27: Mitochondria 97.3 0.0044 9.5E-08 60.6 13.2 82 242-323 105-186 (429)
200 PF08579 RPM2: Mitochondrial r 97.3 0.0015 3.3E-08 49.5 7.8 82 37-118 26-116 (120)
201 PF14938 SNAP: Soluble NSF att 97.3 0.011 2.4E-07 55.8 15.8 127 479-605 116-263 (282)
202 KOG2280 Vacuolar assembly/sort 97.3 0.27 5.8E-06 50.6 29.7 112 410-537 683-794 (829)
203 KOG0550 Molecular chaperone (D 97.3 0.083 1.8E-06 50.2 20.4 147 453-602 260-437 (486)
204 KOG1130 Predicted G-alpha GTPa 97.3 0.0021 4.6E-08 60.2 10.1 128 479-606 197-342 (639)
205 COG3898 Uncharacterized membra 97.3 0.18 3.8E-06 47.6 24.5 253 344-605 85-355 (531)
206 KOG2796 Uncharacterized conser 97.3 0.011 2.4E-07 52.1 13.4 152 27-180 166-327 (366)
207 KOG0543 FKBP-type peptidyl-pro 97.2 0.0046 9.9E-08 58.5 11.7 94 514-607 258-354 (397)
208 PF13512 TPR_18: Tetratricopep 97.2 0.0097 2.1E-07 48.0 11.5 91 520-610 17-130 (142)
209 PRK10803 tol-pal system protei 97.2 0.0054 1.2E-07 56.5 11.4 102 479-580 145-252 (263)
210 KOG1538 Uncharacterized conser 97.1 0.13 2.8E-06 51.7 20.6 203 93-361 622-824 (1081)
211 PF13371 TPR_9: Tetratricopept 97.1 0.0018 3.9E-08 46.6 6.0 65 521-585 3-69 (73)
212 KOG2041 WD40 repeat protein [G 97.1 0.45 9.7E-06 48.5 28.9 19 518-536 1026-1044(1189)
213 PF13525 YfiO: Outer membrane 97.1 0.027 5.9E-07 50.2 14.6 50 551-600 147-199 (203)
214 KOG2280 Vacuolar assembly/sort 97.0 0.49 1.1E-05 48.8 31.3 325 244-602 441-793 (829)
215 KOG2041 WD40 repeat protein [G 97.0 0.47 1E-05 48.4 27.2 60 444-503 1023-1083(1189)
216 PF03704 BTAD: Bacterial trans 97.0 0.012 2.6E-07 49.3 11.4 115 487-615 16-137 (146)
217 COG1729 Uncharacterized protei 97.0 0.0046 9.9E-08 55.5 8.8 65 549-613 182-249 (262)
218 PF13424 TPR_12: Tetratricopep 97.0 0.0012 2.7E-08 48.2 4.5 62 546-607 6-74 (78)
219 PF12688 TPR_5: Tetratrico pep 96.9 0.031 6.6E-07 44.3 12.0 89 347-436 7-100 (120)
220 KOG2796 Uncharacterized conser 96.9 0.064 1.4E-06 47.6 14.4 136 444-580 179-321 (366)
221 PF06239 ECSIT: Evolutionarily 96.8 0.0064 1.4E-07 52.5 7.9 85 37-121 48-153 (228)
222 PF13525 YfiO: Outer membrane 96.8 0.056 1.2E-06 48.2 14.5 142 448-610 11-172 (203)
223 PRK11906 transcriptional regul 96.8 0.024 5.2E-07 55.2 12.3 144 457-603 273-431 (458)
224 PRK10866 outer membrane biogen 96.7 0.45 9.8E-06 43.6 21.5 59 346-406 37-99 (243)
225 PF06239 ECSIT: Evolutionarily 96.7 0.015 3.3E-07 50.3 9.2 89 338-426 44-153 (228)
226 PF03704 BTAD: Bacterial trans 96.6 0.022 4.9E-07 47.7 10.3 73 37-110 63-140 (146)
227 KOG4555 TPR repeat-containing 96.5 0.02 4.3E-07 44.7 7.8 90 521-610 51-146 (175)
228 PRK11906 transcriptional regul 96.5 0.14 3.1E-06 50.1 15.4 146 426-576 273-438 (458)
229 KOG0543 FKBP-type peptidyl-pro 96.4 0.013 2.9E-07 55.5 7.7 110 482-610 213-322 (397)
230 KOG2114 Vacuolar assembly/sort 96.4 0.6 1.3E-05 48.8 19.6 143 14-164 372-517 (933)
231 PF09205 DUF1955: Domain of un 96.4 0.3 6.5E-06 38.5 13.4 140 453-611 13-152 (161)
232 PF13424 TPR_12: Tetratricopep 96.3 0.006 1.3E-07 44.5 4.0 28 478-505 6-33 (78)
233 KOG1258 mRNA processing protei 96.2 1.6 3.4E-05 44.2 30.1 181 410-593 296-489 (577)
234 COG3118 Thioredoxin domain-con 96.2 0.27 5.8E-06 44.9 14.8 116 487-605 144-262 (304)
235 COG0457 NrfG FOG: TPR repeat [ 96.2 0.91 2E-05 41.4 26.1 84 523-606 177-263 (291)
236 PF13281 DUF4071: Domain of un 96.2 1.3 2.9E-05 42.8 21.5 166 443-609 142-335 (374)
237 PF04184 ST7: ST7 protein; In 96.1 0.44 9.5E-06 46.9 16.2 104 477-580 259-381 (539)
238 COG0457 NrfG FOG: TPR repeat [ 96.1 1.1 2.4E-05 40.8 25.3 197 377-577 60-268 (291)
239 PF07719 TPR_2: Tetratricopept 96.0 0.015 3.2E-07 34.1 4.1 32 547-578 3-34 (34)
240 COG3118 Thioredoxin domain-con 96.0 0.8 1.7E-05 42.0 16.5 153 451-605 143-299 (304)
241 PRK11619 lytic murein transgly 95.9 3 6.4E-05 44.4 31.4 76 314-391 103-178 (644)
242 PRK15331 chaperone protein Sic 95.9 0.16 3.5E-06 42.2 10.8 85 452-539 47-131 (165)
243 PF00515 TPR_1: Tetratricopept 95.9 0.013 2.9E-07 34.3 3.5 32 546-577 2-33 (34)
244 COG1729 Uncharacterized protei 95.9 0.14 3E-06 46.3 11.3 93 489-581 153-251 (262)
245 KOG1585 Protein required for f 95.8 1.2 2.7E-05 39.4 16.9 82 519-601 156-249 (308)
246 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.053 1.1E-06 52.9 9.0 62 513-574 75-141 (453)
247 KOG2114 Vacuolar assembly/sort 95.8 3.1 6.8E-05 43.9 27.0 178 37-238 335-519 (933)
248 PF10300 DUF3808: Protein of u 95.8 0.43 9.3E-06 48.7 16.0 115 490-607 246-375 (468)
249 PF12921 ATP13: Mitochondrial 95.7 0.14 3E-06 41.1 9.7 50 472-521 47-96 (126)
250 PF13512 TPR_18: Tetratricopep 95.7 0.33 7.1E-06 39.4 11.7 114 449-580 17-134 (142)
251 KOG1130 Predicted G-alpha GTPa 95.7 0.25 5.4E-06 47.0 12.4 126 412-537 196-339 (639)
252 COG4105 ComL DNA uptake lipopr 95.6 1.6 3.5E-05 39.3 19.6 63 551-614 173-238 (254)
253 PF09205 DUF1955: Domain of un 95.6 0.87 1.9E-05 36.0 13.6 138 351-510 12-152 (161)
254 smart00299 CLH Clathrin heavy 95.5 0.94 2E-05 37.4 14.7 125 446-590 11-136 (140)
255 KOG2610 Uncharacterized conser 95.5 0.18 3.8E-06 46.6 10.4 158 453-613 114-281 (491)
256 PF02259 FAT: FAT domain; Int 95.5 2.9 6.3E-05 41.1 21.7 149 441-592 145-305 (352)
257 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.8 6E-05 40.8 33.5 134 442-578 397-535 (660)
258 KOG1258 mRNA processing protei 95.3 3.9 8.3E-05 41.6 27.8 401 37-490 46-488 (577)
259 KOG1941 Acetylcholine receptor 95.3 0.23 4.9E-06 46.5 10.5 48 351-398 16-65 (518)
260 KOG2610 Uncharacterized conser 95.2 0.69 1.5E-05 42.9 13.3 179 421-603 113-310 (491)
261 KOG4234 TPR repeat-containing 95.1 0.084 1.8E-06 44.8 6.6 124 484-609 102-234 (271)
262 PF09613 HrpB1_HrpK: Bacterial 94.9 0.18 3.9E-06 41.7 7.9 82 515-596 9-95 (160)
263 PF08631 SPO22: Meiosis protei 94.8 3.6 7.8E-05 38.8 19.4 152 21-173 4-193 (278)
264 PF10300 DUF3808: Protein of u 94.8 2.3 5E-05 43.4 17.6 160 343-505 190-375 (468)
265 PF12921 ATP13: Mitochondrial 94.8 0.45 9.7E-06 38.2 10.0 48 508-555 47-98 (126)
266 TIGR02561 HrpB1_HrpK type III 94.6 0.2 4.4E-06 40.6 7.5 72 525-596 22-95 (153)
267 KOG1941 Acetylcholine receptor 94.6 1 2.3E-05 42.3 12.7 42 321-362 17-64 (518)
268 KOG4555 TPR repeat-containing 94.5 0.4 8.7E-06 37.7 8.4 54 451-505 52-105 (175)
269 PF13428 TPR_14: Tetratricopep 94.4 0.088 1.9E-06 33.0 4.2 33 579-611 1-33 (44)
270 PF07719 TPR_2: Tetratricopept 94.4 0.079 1.7E-06 30.8 3.7 31 580-610 2-32 (34)
271 PF13176 TPR_7: Tetratricopept 94.4 0.089 1.9E-06 31.2 3.9 26 581-606 1-26 (36)
272 KOG4234 TPR repeat-containing 94.3 0.66 1.4E-05 39.6 10.1 91 450-544 103-200 (271)
273 PF13181 TPR_8: Tetratricopept 94.0 0.084 1.8E-06 30.8 3.3 30 547-576 3-32 (34)
274 COG4105 ComL DNA uptake lipopr 93.9 4.8 0.0001 36.4 17.5 61 519-579 173-238 (254)
275 COG4785 NlpI Lipoprotein NlpI, 93.9 4.1 8.8E-05 35.6 15.5 62 410-471 98-162 (297)
276 smart00299 CLH Clathrin heavy 93.8 3.3 7.2E-05 34.1 14.8 43 381-424 12-54 (140)
277 PF04053 Coatomer_WDAD: Coatom 93.7 1.9 4.2E-05 43.4 14.1 161 349-540 269-429 (443)
278 PF04053 Coatomer_WDAD: Coatom 93.7 1.5 3.2E-05 44.2 13.2 157 419-605 269-428 (443)
279 PF00515 TPR_1: Tetratricopept 93.5 0.14 3E-06 29.8 3.6 31 580-610 2-32 (34)
280 KOG1920 IkappaB kinase complex 93.4 15 0.00033 40.8 23.0 141 416-572 913-1053(1265)
281 KOG3941 Intermediate in Toll s 93.2 0.36 7.9E-06 43.5 7.1 97 37-133 68-186 (406)
282 COG4649 Uncharacterized protei 93.1 3.3 7.2E-05 34.7 11.7 121 452-573 68-195 (221)
283 PF13174 TPR_6: Tetratricopept 93.0 0.15 3.3E-06 29.3 3.2 30 581-610 2-31 (33)
284 KOG3941 Intermediate in Toll s 92.9 0.95 2.1E-05 41.0 9.2 98 330-427 54-174 (406)
285 PF09613 HrpB1_HrpK: Bacterial 92.8 1.2 2.5E-05 37.1 9.0 120 477-601 7-131 (160)
286 COG3629 DnrI DNA-binding trans 92.8 0.49 1.1E-05 43.6 7.6 62 546-607 154-215 (280)
287 PRK09687 putative lyase; Provi 92.7 8.9 0.00019 36.1 25.4 25 551-576 241-265 (280)
288 KOG2066 Vacuolar assembly/sort 92.6 16 0.00034 38.7 23.4 78 144-257 363-440 (846)
289 COG2976 Uncharacterized protei 92.6 6.3 0.00014 34.0 13.4 89 484-577 96-191 (207)
290 KOG1464 COP9 signalosome, subu 92.5 8 0.00017 35.0 18.7 273 306-584 22-342 (440)
291 COG2976 Uncharacterized protei 92.5 3.9 8.5E-05 35.1 11.8 90 519-609 95-189 (207)
292 PF06552 TOM20_plant: Plant sp 92.4 0.21 4.6E-06 42.0 4.4 110 493-612 7-140 (186)
293 PF04184 ST7: ST7 protein; In 92.4 5.9 0.00013 39.5 14.5 55 518-572 264-322 (539)
294 PF02259 FAT: FAT domain; Int 92.3 8 0.00017 38.0 16.5 65 543-607 144-212 (352)
295 PF08631 SPO22: Meiosis protei 92.3 10 0.00022 35.7 24.8 59 379-438 87-148 (278)
296 PF06552 TOM20_plant: Plant sp 92.0 4.1 8.9E-05 34.6 11.3 97 459-556 8-124 (186)
297 PF13176 TPR_7: Tetratricopept 91.9 0.24 5.1E-06 29.4 3.1 27 547-573 1-27 (36)
298 KOG4648 Uncharacterized conser 91.9 0.37 8E-06 44.7 5.6 109 483-598 103-214 (536)
299 KOG4648 Uncharacterized conser 91.8 0.46 1E-05 44.1 6.1 96 449-548 104-201 (536)
300 KOG1585 Protein required for f 91.7 3.3 7.1E-05 36.9 10.8 18 450-467 39-56 (308)
301 PF13181 TPR_8: Tetratricopept 91.6 0.41 8.9E-06 27.7 3.9 29 580-608 2-30 (34)
302 PF07721 TPR_4: Tetratricopept 91.6 0.28 6.1E-06 26.5 2.9 24 580-603 2-25 (26)
303 PF07035 Mic1: Colon cancer-as 91.5 7.8 0.00017 32.8 13.2 134 260-405 14-149 (167)
304 COG3947 Response regulator con 91.4 12 0.00025 34.6 14.7 61 547-607 281-341 (361)
305 COG4785 NlpI Lipoprotein NlpI, 91.4 0.61 1.3E-05 40.4 6.0 110 487-602 75-189 (297)
306 PRK09687 putative lyase; Provi 91.3 13 0.00028 35.0 25.8 75 408-487 203-277 (280)
307 PF13174 TPR_6: Tetratricopept 91.0 0.34 7.4E-06 27.8 3.2 31 548-578 3-33 (33)
308 COG3629 DnrI DNA-binding trans 91.0 2 4.3E-05 39.8 9.4 78 37-115 154-236 (280)
309 PF07035 Mic1: Colon cancer-as 90.8 9.2 0.0002 32.4 15.0 42 92-133 15-56 (167)
310 KOG1586 Protein required for f 90.8 11 0.00025 33.4 15.9 128 454-581 85-231 (288)
311 TIGR02561 HrpB1_HrpK type III 90.7 2.8 6E-05 34.3 8.8 76 477-557 7-89 (153)
312 KOG0890 Protein kinase of the 90.5 49 0.0011 40.2 30.1 306 284-610 1392-1733(2382)
313 PF11207 DUF2989: Protein of u 90.4 1.4 3.1E-05 38.1 7.4 74 524-598 118-197 (203)
314 PF04097 Nic96: Nup93/Nic96; 90.3 28 0.00061 37.2 21.0 86 348-438 265-354 (613)
315 PF10602 RPN7: 26S proteasome 90.2 4.5 9.8E-05 34.9 10.5 96 444-539 38-139 (177)
316 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 0.88 1.9E-05 29.8 4.6 38 549-586 5-42 (53)
317 KOG4642 Chaperone-dependent E3 90.0 0.87 1.9E-05 40.2 5.9 49 557-605 56-104 (284)
318 PRK10941 hypothetical protein; 90.0 1.5 3.2E-05 40.7 7.8 62 549-610 185-246 (269)
319 KOG1586 Protein required for f 89.9 14 0.0003 33.0 15.1 154 320-512 24-188 (288)
320 KOG1308 Hsp70-interacting prot 89.9 0.28 6E-06 45.6 2.9 86 525-610 126-213 (377)
321 KOG1464 COP9 signalosome, subu 88.9 15 0.00033 33.3 12.7 156 9-164 25-218 (440)
322 PF13374 TPR_10: Tetratricopep 88.5 0.93 2E-05 27.7 3.9 28 580-607 3-30 (42)
323 PRK15180 Vi polysaccharide bio 88.4 7 0.00015 38.5 11.1 121 453-577 300-423 (831)
324 PF14561 TPR_20: Tetratricopep 88.3 1.6 3.4E-05 32.6 5.5 62 544-605 21-85 (90)
325 PF10602 RPN7: 26S proteasome 88.1 6.4 0.00014 34.0 10.0 94 412-505 37-141 (177)
326 PF09986 DUF2225: Uncharacteri 87.9 3.3 7.2E-05 37.0 8.3 67 546-612 119-198 (214)
327 smart00028 TPR Tetratricopepti 87.9 0.94 2E-05 25.2 3.5 26 581-606 3-28 (34)
328 PF13170 DUF4003: Protein of u 87.9 24 0.00051 33.5 14.3 49 53-101 79-133 (297)
329 KOG1550 Extracellular protein 87.5 41 0.00089 35.5 21.8 212 391-609 308-539 (552)
330 PF00637 Clathrin: Region in C 87.5 0.65 1.4E-05 38.6 3.5 18 170-187 123-140 (143)
331 PF13431 TPR_17: Tetratricopep 87.4 0.37 8.1E-06 28.1 1.4 29 3-31 6-34 (34)
332 PRK11619 lytic murein transgly 87.3 46 0.00099 35.8 38.9 78 211-290 101-178 (644)
333 KOG4279 Serine/threonine prote 86.9 23 0.0005 37.3 14.1 177 397-586 184-407 (1226)
334 KOG1920 IkappaB kinase complex 86.3 63 0.0014 36.4 20.3 125 223-367 894-1025(1265)
335 KOG0376 Serine-threonine phosp 85.8 0.79 1.7E-05 44.9 3.4 102 484-588 11-115 (476)
336 PF13374 TPR_10: Tetratricopep 85.8 1.5 3.3E-05 26.7 3.7 27 547-573 4-30 (42)
337 KOG4570 Uncharacterized conser 85.6 7.7 0.00017 36.0 9.2 96 406-505 59-163 (418)
338 PRK15180 Vi polysaccharide bio 85.6 41 0.00089 33.5 28.0 120 182-305 299-421 (831)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 5.4 0.00012 29.7 6.6 59 460-520 25-83 (103)
340 COG1747 Uncharacterized N-term 85.0 46 0.00099 33.6 22.1 47 493-539 185-231 (711)
341 KOG4507 Uncharacterized conser 84.7 2.8 6E-05 42.3 6.5 100 488-590 618-721 (886)
342 PF02284 COX5A: Cytochrome c o 84.5 5.1 0.00011 30.2 6.3 60 460-521 28-87 (108)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 5.6 0.00012 29.6 6.4 61 53-114 24-84 (103)
344 KOG0403 Neoplastic transformat 84.3 45 0.00097 32.9 18.9 71 314-388 513-586 (645)
345 smart00028 TPR Tetratricopepti 84.3 2 4.4E-05 23.7 3.7 32 546-577 2-33 (34)
346 TIGR03504 FimV_Cterm FimV C-te 84.0 2.3 4.9E-05 26.5 3.7 27 583-609 3-29 (44)
347 COG4649 Uncharacterized protei 83.7 26 0.00056 29.7 15.5 117 422-539 69-193 (221)
348 TIGR02508 type_III_yscG type I 83.6 17 0.00036 27.5 8.5 86 86-175 20-105 (115)
349 KOG2066 Vacuolar assembly/sort 83.3 68 0.0015 34.3 25.8 170 42-239 362-535 (846)
350 COG4455 ImpE Protein of avirul 83.2 4.7 0.0001 35.3 6.5 64 516-579 4-69 (273)
351 TIGR02508 type_III_yscG type I 83.2 17 0.00038 27.3 8.4 61 418-481 46-106 (115)
352 PRK12798 chemotaxis protein; R 83.1 50 0.0011 32.5 21.4 179 424-605 125-321 (421)
353 KOG0890 Protein kinase of the 82.7 1.3E+02 0.0028 37.0 30.4 26 561-586 1771-1796(2382)
354 KOG3807 Predicted membrane pro 82.5 18 0.00038 33.9 10.2 54 448-503 281-337 (556)
355 PF00637 Clathrin: Region in C 82.3 1.5 3.2E-05 36.4 3.4 85 76-163 12-96 (143)
356 PF10345 Cohesin_load: Cohesin 81.9 78 0.0017 34.0 33.8 80 223-302 153-252 (608)
357 KOG4570 Uncharacterized conser 80.9 9.2 0.0002 35.6 7.8 101 305-406 59-165 (418)
358 COG1747 Uncharacterized N-term 80.6 68 0.0015 32.4 22.4 141 444-591 101-251 (711)
359 PF13929 mRNA_stabil: mRNA sta 80.4 50 0.0011 30.8 12.3 111 256-366 144-263 (292)
360 KOG0276 Vesicle coat complex C 80.2 23 0.0005 36.3 10.8 24 515-538 668-691 (794)
361 KOG1550 Extracellular protein 80.1 77 0.0017 33.5 15.6 113 492-610 308-428 (552)
362 PRK13800 putative oxidoreducta 79.9 1.1E+02 0.0025 34.6 24.5 254 331-606 625-879 (897)
363 TIGR02270 conserved hypothetic 79.6 71 0.0015 32.0 22.7 232 41-298 43-275 (410)
364 KOG3364 Membrane protein invol 79.5 14 0.00031 29.7 7.4 38 546-583 72-109 (149)
365 COG2909 MalT ATP-dependent tra 79.4 1E+02 0.0022 33.7 25.7 219 386-604 425-684 (894)
366 PF02284 COX5A: Cytochrome c o 79.1 15 0.00034 27.8 7.1 60 359-419 28-87 (108)
367 smart00386 HAT HAT (Half-A-TPR 78.6 3.5 7.6E-05 23.2 3.2 30 559-588 1-30 (33)
368 COG4455 ImpE Protein of avirul 78.5 48 0.001 29.4 11.4 60 444-504 3-62 (273)
369 PF09670 Cas_Cas02710: CRISPR- 78.4 32 0.0007 34.1 11.6 52 453-505 142-197 (379)
370 KOG0276 Vesicle coat complex C 78.4 46 0.001 34.3 12.3 99 221-336 649-747 (794)
371 PF04097 Nic96: Nup93/Nic96; 78.3 1E+02 0.0022 33.1 24.8 49 136-186 111-159 (613)
372 KOG0545 Aryl-hydrocarbon recep 77.6 21 0.00046 32.0 8.8 99 480-578 181-297 (329)
373 COG0790 FOG: TPR repeat, SEL1 77.0 68 0.0015 30.4 18.6 116 492-611 128-269 (292)
374 PF12862 Apc5: Anaphase-promot 76.9 7.7 0.00017 29.3 5.4 52 556-607 9-69 (94)
375 PF13170 DUF4003: Protein of u 76.9 69 0.0015 30.4 21.3 137 357-523 78-227 (297)
376 KOG3364 Membrane protein invol 76.8 15 0.00033 29.5 6.9 69 542-610 29-102 (149)
377 PF11207 DUF2989: Protein of u 76.1 33 0.00072 30.0 9.5 77 152-229 121-198 (203)
378 PF14863 Alkyl_sulf_dimr: Alky 76.0 9.9 0.00022 31.2 6.1 65 529-596 57-121 (141)
379 PF14853 Fis1_TPR_C: Fis1 C-te 75.8 6 0.00013 25.9 3.9 30 581-610 3-32 (53)
380 KOG2063 Vacuolar assembly/sort 75.8 1.2E+02 0.0027 33.5 15.5 125 25-149 493-638 (877)
381 PF04190 DUF410: Protein of un 74.9 72 0.0016 29.7 14.7 122 166-304 43-170 (260)
382 PRK10941 hypothetical protein; 73.6 21 0.00045 33.3 8.3 67 518-584 186-254 (269)
383 KOG0551 Hsp90 co-chaperone CNS 73.5 15 0.00033 34.5 7.2 87 518-604 86-178 (390)
384 PF14561 TPR_20: Tetratricopep 73.1 35 0.00076 25.5 7.9 44 565-608 8-51 (90)
385 KOG3824 Huntingtin interacting 73.0 4.5 9.8E-05 37.2 3.7 63 523-585 126-190 (472)
386 PF07720 TPR_3: Tetratricopept 72.4 10 0.00022 22.4 3.9 18 584-601 6-23 (36)
387 PF10579 Rapsyn_N: Rapsyn N-te 72.3 11 0.00024 26.9 4.7 45 455-499 19-65 (80)
388 TIGR03504 FimV_Cterm FimV C-te 72.2 8.3 0.00018 24.1 3.7 25 143-167 5-29 (44)
389 KOG4507 Uncharacterized conser 72.0 20 0.00044 36.5 8.1 133 474-609 568-706 (886)
390 KOG2396 HAT (Half-A-TPR) repea 71.7 1.2E+02 0.0026 30.8 33.6 93 483-578 466-564 (568)
391 PRK13800 putative oxidoreducta 71.4 1.9E+02 0.0041 32.9 25.6 255 229-505 624-880 (897)
392 KOG2471 TPR repeat-containing 71.2 98 0.0021 31.2 12.2 65 548-615 209-273 (696)
393 KOG0530 Protein farnesyltransf 71.1 85 0.0018 28.8 12.6 88 528-615 93-183 (318)
394 PF10255 Paf67: RNA polymerase 70.6 29 0.00063 34.3 8.8 58 549-606 126-191 (404)
395 PF10345 Cohesin_load: Cohesin 70.5 1.6E+02 0.0034 31.7 32.4 49 352-400 372-428 (608)
396 PF08311 Mad3_BUB1_I: Mad3/BUB 70.5 38 0.00083 27.3 8.2 42 563-604 81-124 (126)
397 PF09477 Type_III_YscG: Bacter 69.9 48 0.001 25.5 8.2 79 391-472 21-99 (116)
398 COG4976 Predicted methyltransf 69.8 8.1 0.00018 34.2 4.4 56 523-578 5-62 (287)
399 COG5159 RPN6 26S proteasome re 69.3 97 0.0021 28.7 13.1 53 448-500 9-68 (421)
400 KOG0376 Serine-threonine phosp 69.1 7.6 0.00017 38.4 4.6 102 449-555 11-115 (476)
401 KOG4642 Chaperone-dependent E3 68.7 73 0.0016 28.8 9.8 81 421-503 20-104 (284)
402 PHA02875 ankyrin repeat protei 68.3 1.4E+02 0.003 30.1 17.7 198 59-274 18-229 (413)
403 COG4976 Predicted methyltransf 68.0 10 0.00023 33.5 4.6 56 555-610 5-60 (287)
404 KOG2063 Vacuolar assembly/sort 67.4 2.1E+02 0.0045 31.9 16.4 111 73-183 506-637 (877)
405 KOG3824 Huntingtin interacting 67.1 8.2 0.00018 35.7 4.0 53 488-543 127-181 (472)
406 COG2912 Uncharacterized conser 65.5 21 0.00045 32.8 6.3 60 551-610 187-246 (269)
407 PF07163 Pex26: Pex26 protein; 64.7 79 0.0017 29.3 9.6 87 348-434 90-181 (309)
408 PF10579 Rapsyn_N: Rapsyn N-te 64.3 15 0.00033 26.3 4.1 45 557-601 18-65 (80)
409 PF13762 MNE1: Mitochondrial s 63.9 40 0.00086 27.8 7.0 109 9-122 13-131 (145)
410 PRK13342 recombination factor 63.6 1.7E+02 0.0037 29.5 15.2 113 257-387 154-276 (413)
411 PF13934 ELYS: Nuclear pore co 63.0 1.2E+02 0.0026 27.5 11.5 21 483-503 114-134 (226)
412 PF06957 COPI_C: Coatomer (COP 63.0 52 0.0011 32.8 8.9 44 535-578 288-333 (422)
413 PF04910 Tcf25: Transcriptiona 61.9 1.7E+02 0.0037 28.9 18.1 54 450-503 111-165 (360)
414 cd08819 CARD_MDA5_2 Caspase ac 61.7 57 0.0012 24.0 6.7 38 423-461 48-85 (88)
415 KOG2297 Predicted translation 61.5 28 0.0006 32.4 6.2 144 5-157 160-341 (412)
416 KOG0545 Aryl-hydrocarbon recep 61.4 64 0.0014 29.2 8.2 98 445-544 181-296 (329)
417 PF11846 DUF3366: Domain of un 61.1 32 0.00068 30.3 6.7 35 542-576 141-175 (193)
418 PF10366 Vps39_1: Vacuolar sor 61.0 53 0.0012 25.5 7.1 39 26-64 29-67 (108)
419 PF12862 Apc5: Anaphase-promot 60.2 37 0.00079 25.6 6.0 24 551-574 47-70 (94)
420 PF07163 Pex26: Pex26 protein; 60.1 1E+02 0.0023 28.6 9.5 83 418-500 90-181 (309)
421 PF13929 mRNA_stabil: mRNA sta 59.9 1.5E+02 0.0033 27.8 17.9 113 427-539 144-264 (292)
422 COG3947 Response regulator con 59.7 49 0.0011 30.8 7.4 60 444-504 281-340 (361)
423 PF11846 DUF3366: Domain of un 59.6 31 0.00067 30.3 6.4 57 487-543 118-175 (193)
424 COG4941 Predicted RNA polymera 59.5 1.7E+02 0.0036 28.1 11.4 120 458-582 272-402 (415)
425 KOG4077 Cytochrome c oxidase, 59.3 66 0.0014 25.6 7.0 57 462-520 69-125 (149)
426 cd08819 CARD_MDA5_2 Caspase ac 58.0 58 0.0013 24.0 6.2 65 90-156 21-85 (88)
427 PF09477 Type_III_YscG: Bacter 57.2 88 0.0019 24.1 9.2 87 85-175 20-106 (116)
428 PF11768 DUF3312: Protein of u 57.1 1.3E+02 0.0027 31.1 10.5 24 415-438 412-435 (545)
429 PHA02875 ankyrin repeat protei 57.0 2.1E+02 0.0045 28.9 12.8 76 82-161 10-89 (413)
430 COG5191 Uncharacterized conser 56.1 29 0.00062 32.4 5.4 79 509-587 103-184 (435)
431 KOG4077 Cytochrome c oxidase, 56.0 47 0.001 26.4 5.8 42 92-133 70-111 (149)
432 KOG1308 Hsp70-interacting prot 55.6 13 0.00029 35.1 3.4 86 489-576 126-213 (377)
433 PF10516 SHNi-TPR: SHNi-TPR; 55.4 32 0.00069 20.7 3.8 28 580-607 2-29 (38)
434 PF04190 DUF410: Protein of un 54.2 1.9E+02 0.004 27.0 18.2 104 322-436 2-115 (260)
435 TIGR02710 CRISPR-associated pr 54.1 2.2E+02 0.0048 28.1 11.4 25 451-475 139-163 (380)
436 COG2909 MalT ATP-dependent tra 53.3 3.5E+02 0.0076 29.9 30.1 57 482-539 623-685 (894)
437 smart00777 Mad3_BUB1_I Mad3/BU 53.2 99 0.0021 24.8 7.5 40 564-603 82-123 (125)
438 KOG0292 Vesicle coat complex C 52.5 1E+02 0.0023 33.5 9.3 54 477-540 672-725 (1202)
439 PF11663 Toxin_YhaV: Toxin wit 52.4 22 0.00047 28.6 3.6 33 47-81 106-138 (140)
440 cd00280 TRFH Telomeric Repeat 52.4 41 0.0009 28.8 5.4 42 553-595 119-160 (200)
441 PF11848 DUF3368: Domain of un 51.7 59 0.0013 20.7 5.0 37 144-180 9-45 (48)
442 PF08424 NRDE-2: NRDE-2, neces 51.6 2.3E+02 0.0051 27.4 14.5 114 459-575 48-184 (321)
443 PF10366 Vps39_1: Vacuolar sor 50.8 92 0.002 24.2 6.9 29 240-268 39-67 (108)
444 PF04034 DUF367: Domain of unk 49.9 1.3E+02 0.0029 24.0 7.5 60 513-572 66-126 (127)
445 KOG0686 COP9 signalosome, subu 48.6 2.8E+02 0.0061 27.4 11.3 164 13-180 153-352 (466)
446 PRK10564 maltose regulon perip 48.6 31 0.00067 32.3 4.5 44 135-178 254-298 (303)
447 PF11848 DUF3368: Domain of un 47.8 72 0.0016 20.3 5.1 33 251-283 13-45 (48)
448 PF14689 SPOB_a: Sensor_kinase 47.7 52 0.0011 22.4 4.5 30 476-505 22-51 (62)
449 KOG4567 GTPase-activating prot 46.8 2.6E+02 0.0056 26.5 10.1 73 462-540 263-345 (370)
450 PF04781 DUF627: Protein of un 46.6 1.4E+02 0.003 23.3 8.4 41 563-603 62-102 (111)
451 KOG0292 Vesicle coat complex C 46.3 29 0.00064 37.3 4.5 74 484-573 627-700 (1202)
452 PF04910 Tcf25: Transcriptiona 45.5 3.1E+02 0.0068 27.0 14.0 57 551-607 109-167 (360)
453 PF08311 Mad3_BUB1_I: Mad3/BUB 45.5 1.6E+02 0.0035 23.7 8.1 43 460-502 81-124 (126)
454 KOG2581 26S proteasome regulat 45.1 3.2E+02 0.007 27.1 12.0 25 581-606 320-344 (493)
455 KOG2659 LisH motif-containing 44.5 2.1E+02 0.0046 25.7 8.8 20 450-469 72-91 (228)
456 TIGR01503 MthylAspMut_E methyl 44.5 1.8E+02 0.0039 29.3 9.2 49 254-305 68-116 (480)
457 PRK13342 recombination factor 44.2 3.5E+02 0.0077 27.3 15.7 101 373-491 173-279 (413)
458 KOG2581 26S proteasome regulat 44.1 2.4E+02 0.0052 27.9 9.6 137 442-578 124-280 (493)
459 KOG2471 TPR repeat-containing 43.9 3.7E+02 0.008 27.4 14.7 39 149-187 29-67 (696)
460 PF13762 MNE1: Mitochondrial s 43.8 1.9E+02 0.0041 24.0 10.4 76 213-288 43-128 (145)
461 KOG2062 26S proteasome regulat 43.5 4.6E+02 0.0099 28.4 27.8 23 143-165 216-238 (929)
462 KOG2422 Uncharacterized conser 43.5 4.1E+02 0.0088 27.8 14.5 124 41-164 289-446 (665)
463 cd00280 TRFH Telomeric Repeat 43.0 1.7E+02 0.0037 25.3 7.6 65 459-527 86-157 (200)
464 COG5191 Uncharacterized conser 42.2 21 0.00045 33.3 2.5 68 542-609 104-172 (435)
465 PHA02537 M terminase endonucle 40.7 2.8E+02 0.0061 25.2 9.4 20 558-577 191-210 (230)
466 PF13934 ELYS: Nuclear pore co 40.2 2.9E+02 0.0062 25.1 12.5 77 423-503 90-166 (226)
467 PF02184 HAT: HAT (Half-A-TPR) 39.1 62 0.0013 18.6 3.1 26 560-586 2-27 (32)
468 PF11817 Foie-gras_1: Foie gra 38.8 1E+02 0.0022 28.5 6.5 54 482-535 183-240 (247)
469 PRK12356 glutaminase; Reviewed 38.2 3.7E+02 0.0081 25.8 10.7 143 428-573 140-304 (319)
470 PF11663 Toxin_YhaV: Toxin wit 37.9 46 0.00099 26.9 3.4 33 147-181 105-137 (140)
471 KOG2422 Uncharacterized conser 37.8 5E+02 0.011 27.2 16.0 56 449-504 349-405 (665)
472 COG5159 RPN6 26S proteasome re 37.7 3.5E+02 0.0076 25.4 20.0 91 415-505 129-234 (421)
473 KOG0889 Histone acetyltransfer 37.3 1.1E+03 0.025 31.2 21.0 20 555-574 2822-2841(3550)
474 KOG4567 GTPase-activating prot 36.7 3.6E+02 0.0079 25.6 9.2 44 361-404 263-306 (370)
475 PRK10564 maltose regulon perip 36.4 71 0.0015 30.0 4.9 38 242-279 259-296 (303)
476 COG5108 RPO41 Mitochondrial DN 36.1 1.7E+02 0.0036 30.9 7.7 81 15-98 33-130 (1117)
477 KOG0991 Replication factor C, 35.9 3.4E+02 0.0073 24.7 11.6 141 212-376 133-273 (333)
478 PF11768 DUF3312: Protein of u 35.6 1.9E+02 0.0041 29.9 8.0 62 3-64 399-472 (545)
479 KOG4814 Uncharacterized conser 34.7 2.5E+02 0.0053 29.7 8.6 54 483-539 400-454 (872)
480 KOG4814 Uncharacterized conser 34.5 4.2E+02 0.0092 28.1 10.1 52 555-606 404-455 (872)
481 PF09454 Vps23_core: Vps23 cor 34.5 1.1E+02 0.0024 21.1 4.5 48 440-488 6-53 (65)
482 COG5108 RPO41 Mitochondrial DN 34.4 1.7E+02 0.0036 30.9 7.4 47 76-122 33-81 (1117)
483 PRK02287 hypothetical protein; 34.3 2.7E+02 0.0059 23.8 7.5 60 514-573 108-168 (171)
484 COG0735 Fur Fe2+/Zn2+ uptake r 34.0 1.6E+02 0.0034 24.4 6.3 63 58-121 8-70 (145)
485 PF12583 TPPII_N: Tripeptidyl 34.0 1.3E+02 0.0027 24.2 5.2 39 554-592 85-123 (139)
486 PF00244 14-3-3: 14-3-3 protei 33.3 3.8E+02 0.0083 24.5 12.8 46 562-607 143-197 (236)
487 KOG1498 26S proteasome regulat 33.1 4.9E+02 0.011 25.7 12.2 220 389-637 25-271 (439)
488 KOG2659 LisH motif-containing 33.1 3.3E+02 0.007 24.6 8.2 13 423-435 115-127 (228)
489 PF14689 SPOB_a: Sensor_kinase 33.0 71 0.0015 21.8 3.4 24 245-268 28-51 (62)
490 cd07153 Fur_like Ferric uptake 33.0 99 0.0021 24.2 4.8 45 41-85 5-49 (116)
491 PF10475 DUF2450: Protein of u 32.8 1.9E+02 0.004 27.5 7.4 48 17-64 105-155 (291)
492 KOG1524 WD40 repeat-containing 32.8 2.3E+02 0.0049 29.0 7.8 24 480-503 576-599 (737)
493 PF04762 IKI3: IKI3 family; I 32.5 2.2E+02 0.0047 32.4 8.8 134 456-605 792-927 (928)
494 COG2178 Predicted RNA-binding 32.2 3.5E+02 0.0076 23.7 8.5 19 589-607 131-149 (204)
495 PRK09857 putative transposase; 32.1 2.7E+02 0.0059 26.5 8.3 64 550-613 211-274 (292)
496 PF15015 NYD-SP12_N: Spermatog 32.1 1.2E+02 0.0026 30.0 5.7 73 516-589 231-309 (569)
497 PF12968 DUF3856: Domain of Un 32.0 2.6E+02 0.0057 22.2 9.6 23 583-605 104-126 (144)
498 PF08424 NRDE-2: NRDE-2, neces 31.9 4.8E+02 0.01 25.2 16.2 116 493-610 47-185 (321)
499 COG4259 Uncharacterized protei 31.8 2.2E+02 0.0048 21.6 5.8 30 554-583 81-110 (121)
500 PF14669 Asp_Glu_race_2: Putat 31.2 3.6E+02 0.0078 23.6 13.9 97 330-436 96-206 (233)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-94 Score=786.17 Aligned_cols=631 Identities=36% Similarity=0.643 Sum_probs=619.8
Q ss_pred ccCCc-chHhhhhHHHhhhhcCChhHHHHhhhhh-----hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHH
Q 006627 4 KNGFL-NLEQTRQCHAHIIKTHFKFSYTNIINPL-----TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTI 77 (638)
Q Consensus 4 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 77 (638)
+.|+. +..++|.|+.+|.+.|+++.|.++|++| .+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 114 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 34555 8889999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHH
Q 006627 78 LKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEAL 157 (638)
Q Consensus 78 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 157 (638)
+++|...+++..+.+++..+.+.|+.||+.+++.|+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 006627 158 EVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ 237 (638)
Q Consensus 158 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 237 (638)
++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|..+ |..+|+.|+.+|++.|++++|.++|++|..
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--DVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc--chHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHH
Q 006627 238 NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALV 317 (638)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 317 (638)
||..+||.+|.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHH
Q 006627 318 DMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKW 397 (638)
Q Consensus 318 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 397 (638)
.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 9999999999999999999999999999999999999999999999999985 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006627 398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG 477 (638)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 477 (638)
++..+.+.|+.++..++++|+++|+++|++++|.++|+++ .+|+.+||+++.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKL 557 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 557 (638)
.||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|..++.+|..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999966799999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCeeEEEECCEEEEEEeCCccCCC
Q 006627 558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSVEVNGLVHKFIRGGMVNWK 637 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (638)
+|+.+.++.+.+++++++|+++..|..|+++|...|+|++|.++.+.|++.|++++||++||++++.||.|+.|+.+|.+
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~ 749 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 006627 638 S 638 (638)
Q Consensus 638 ~ 638 (638)
+
T Consensus 750 ~ 750 (857)
T PLN03077 750 I 750 (857)
T ss_pred h
Confidence 4
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-77 Score=650.21 Aligned_cols=571 Identities=28% Similarity=0.494 Sum_probs=547.6
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhh
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMY 116 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 116 (638)
..+|.++.++++.|++++|..+|+.|.+.|++|+..+|..++.+|...+..+.+.+++..+.+.+..++..++|.++..|
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHH
Q 006627 117 SECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHA 196 (638)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 196 (638)
++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChH
Q 006627 197 CVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEI 276 (638)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (638)
.+.+.|..+ +..+++.|+.+|++.|+++.|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..
T Consensus 212 ~~~~~g~~~--~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 212 HVVRFGFEL--DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHHHcCCCc--ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 006627 277 TILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHC 356 (638)
Q Consensus 277 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 356 (638)
||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.+|.+|++.|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627 357 IDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSE 436 (638)
Q Consensus 357 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (638)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHH
Q 006627 437 AIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHY 516 (638)
Q Consensus 437 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 516 (638)
|.++|+.+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+.+.+.+++..+.+. |+.++..++
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~ 527 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLP 527 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceec
Confidence 9999999999999999999999999999999986 58999999999999999999999999999999886 999998888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc--cCCCCcchHHHHHHHHHhcCC
Q 006627 517 GCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILE--IEPQNYGYNVLMSNIYAVANR 594 (638)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 594 (638)
+.|+.+|+++|+.++|.++|+++ .||..+|+.++.+|.++|+.++|.++|+++.+ ..|+ ..+|..+..+|.+.|+
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence 88888888888888888888888 78888888888888888888888888888876 4555 5678888888888888
Q ss_pred HHHHHHHHHHHh-hcCCcCCC
Q 006627 595 WNDVAGVRRVMK-EIRVKKEP 614 (638)
Q Consensus 595 ~~~A~~~~~~~~-~~~~~~~~ 614 (638)
+++|.++|+.|. +.|+.|+.
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCch
Confidence 888888888887 56777665
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-74 Score=610.06 Aligned_cols=501 Identities=30% Similarity=0.521 Sum_probs=492.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCC-CcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHH
Q 006627 135 RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMD-IRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIAT 213 (638)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 213 (638)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.+.+++..+.+.|..+ +..+++
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~--~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP--DQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc--chHHHH
Confidence 567799999999999999999999999999865 78999999999999999999999999999999999988 999999
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhh
Q 006627 214 ALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQL 293 (638)
Q Consensus 214 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 293 (638)
.++.+|++.|+++.|.++|++|.+||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC
Q 006627 294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVR 373 (638)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 373 (638)
+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|...|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 006627 374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYG 453 (638)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 453 (638)
||..||+.++.+|++.|+++.|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||.|+.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 006627 454 MHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAH 533 (638)
Q Consensus 454 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 533 (638)
+.|+.++|+++|++|.+.|+.||..||..++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627 534 EMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE 613 (638)
Q Consensus 534 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (638)
+++++|+..|+..+|+.++.+|..+|+.+.|..+++++++++|++...|..|+++|.+.|+|++|.++++.|++.|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEECCEEEEEEeCCccCCC
Q 006627 614 PGFSSVEVNGLVHKFIRGGMVNWK 637 (638)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~ 637 (638)
||++||++++.||.|+.|+.+|-+
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~ 586 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQ 586 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCcc
Confidence 999999999999999999999854
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.3e-67 Score=557.19 Aligned_cols=525 Identities=15% Similarity=0.211 Sum_probs=476.7
Q ss_pred CcchHhhhhHHHhhhhcCChhHHHHhhhhh----------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHH
Q 006627 7 FLNLEQTRQCHAHIIKTHFKFSYTNIINPL----------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPT 76 (638)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 76 (638)
..|...|..++..|++.|++++|.++|++| ..++.++..|.+.|.+++|+.+++.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 347888999999999999999999999999 3456778889999999999999999974 99999999
Q ss_pred HHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCC
Q 006627 77 ILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP----NRDVVSWSTMIRGYHRGGL 152 (638)
Q Consensus 77 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~ 152 (638)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred chHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 006627 153 PEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLF 232 (638)
Q Consensus 153 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 232 (638)
+++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|...+.+..||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998854444449999999999999999999999999
Q ss_pred hccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 006627 233 NRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEF 308 (638)
Q Consensus 233 ~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (638)
+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99986 66789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHH
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMK----SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLS 384 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 384 (638)
+..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 67999999999999999999999999999999999999999999999
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006627 385 LCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIF 464 (638)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 464 (638)
+|++.|+++.|.+++.+|.+.|+.||..+|++++..+. +++++|..+.+.+...+. .......+..+.|+.+
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS------GRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------cccccccchHHHHHHH
Confidence 99999999999999999999999999999999987644 245555555433221110 0111122334679999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 006627 465 FVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM---PL 541 (638)
Q Consensus 465 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 541 (638)
|++|.+.|+.||..||..++.+++..+..+.+..+++.+... +..|+..+|+.+++++.+. .++|..++++| ++
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 999999999999999999998888999999999999988765 7888999999999998432 47899999999 66
Q ss_pred CCCHh
Q 006627 542 RPNMI 546 (638)
Q Consensus 542 ~p~~~ 546 (638)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 67653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-66 Score=551.91 Aligned_cols=470 Identities=26% Similarity=0.441 Sum_probs=456.4
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCC-CCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHh
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNG-SEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQM 115 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 115 (638)
.+|+.+|..+.+.|++++|+++|+.|.+.+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..+++.++..
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 589999999999999999999999998764 7899999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHH
Q 006627 116 YSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIH 195 (638)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 195 (638)
|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|..+.+.+++
T Consensus 168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627 196 ACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275 (638)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 275 (638)
..+.+.|..+ +..+++.|+++|++.|++++|.++|+.|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 248 ~~~~~~g~~~--d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 248 CCVLKTGVVG--DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHHhCCCc--cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999988 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcC
Q 006627 276 ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAH 355 (638)
Q Consensus 276 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 355 (638)
.||+.++.+|++.|+++.|.+++..|.+.|++|+..++++|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCcccHHHHHHHHHHhcCCHHHHHHHH
Q 006627 356 CIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEK-QGLEVDVILKTALVDMYAKCGDVNGAYRLF 434 (638)
Q Consensus 356 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 434 (638)
+.++|+++|++|...|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 699999999999999999999999999999
Q ss_pred HcCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC
Q 006627 435 SEAI-YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP 511 (638)
Q Consensus 435 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 511 (638)
+++. .|+..+|++|+.+|...|+++.|..+++++.+. .|+ ..+|..++..|++.|++++|.++++.|.++ |+..
T Consensus 486 ~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 9987 789999999999999999999999999999754 554 579999999999999999999999999986 8754
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.8e-64 Score=533.63 Aligned_cols=501 Identities=16% Similarity=0.170 Sum_probs=460.3
Q ss_pred CCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCC-CCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHH
Q 006627 68 EVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGL-DGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRG 146 (638)
Q Consensus 68 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 146 (638)
.++...|..++..+.+.|+++.|.++|+.|.+.|+ +++...++.++..|.+.|.+++|..+|+.|..||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56677899999999999999999999999999984 67888889999999999999999999999999999999999999
Q ss_pred HHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChH
Q 006627 147 YHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLA 226 (638)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (638)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|..+ |..+|+.++.+|++.|+++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P--dvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA--NVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999887 9999999999999999999
Q ss_pred HHHHHHhccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHH--cCccCChHhHHHHHHHhcccCChhhHHHHHHH
Q 006627 227 YAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIE--ENVFPSEITILSLIIECGFVGGLQLGKWLHAY 300 (638)
Q Consensus 227 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 300 (638)
+|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++.|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999964 8889999999999999999999999999976 57899999999999999999999999999999
Q ss_pred HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCh
Q 006627 301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK----SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNE 376 (638)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 376 (638)
|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999997 468899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCchhHHHHHHHH
Q 006627 377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI----YRDICMWNAMMAGY 452 (638)
Q Consensus 377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~ 452 (638)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 68999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHHhhhcCC
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH----A-------------------GLVTEGKSVFDKMVHGLGL 509 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~ 509 (638)
++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi 843 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GT 843 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CC
Confidence 9999999999999999999999999999999876542 1 1236788999999886 99
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 510 VPKIEHYGCMVDLLGRAGLLDEAHEMIKSM---PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 510 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
.||..+|+.++.++.+.+..+.+..+++.| +..|+..+|+.++.++.+. .++|..+++++.+
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 999999999998888888899999998888 3556788899999887322 3679999999977
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5e-37 Score=344.51 Aligned_cols=577 Identities=13% Similarity=0.009 Sum_probs=395.8
Q ss_pred HHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCc
Q 006627 16 CHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMT 87 (638)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 87 (638)
+...+...|+++.|...|..+ ..+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334455566666666666554 334455556666666666666666665543 33445556666666666666
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627 88 HLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN--R-DVVSWSTMIRGYHRGGLPEEALEVMREMR 164 (638)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (638)
++|.+.++.+.+.. +.+...+..+...+...|++++|...++.+.+ | +...+..++..+.+.|++++|.++++.+.
T Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666666553 33455556666666666666666666665543 1 23344555666667777777777777666
Q ss_pred HCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcc
Q 006627 165 FMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVV 241 (638)
Q Consensus 165 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 241 (638)
.. .+++..++..+...+...|+.+.|...+..+.+..+. +...+..+...+...|++++|.+.++.+.+ .+..
T Consensus 459 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 534 (899)
T TIGR02917 459 KK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR 534 (899)
T ss_pred Hh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 53 2445566677777777777777777777777665543 455666677777777777777777776653 3445
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 006627 242 SWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYG 321 (638)
Q Consensus 242 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (638)
++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|+++.|..+++.+.+.. +.+...+..+...+.
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 66677777777777777777777776653 3344556667777777777777777777776543 455667777777777
Q ss_pred hcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHH
Q 006627 322 KCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL 398 (638)
Q Consensus 322 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (638)
..|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+..++..+...+...|+++.|..+
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888877776643 245566777777777788888888887776542 33456677777777778888888888
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627 399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN 476 (638)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 476 (638)
++.+.+.. +.+...+..+...+...|++++|.+.|+.+. .|+..++..+..++...|++++|.+.++++.+.. +.+
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 87777765 5566677777777778888888888887765 3444666667777778888888888888877753 456
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA 554 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 554 (638)
...+..+...|...|++++|.++|+++.+ ..++++..+..++..+...|+ .+|+++++++ ...| ++.++..+...
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 66777777778888888888888888776 345566777777777877777 7788887776 3344 35566677777
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7778888888888888888888878888888888888888888888887775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-35 Score=333.69 Aligned_cols=591 Identities=12% Similarity=0.005 Sum_probs=396.9
Q ss_pred cCCcchHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cccHH
Q 006627 5 NGFLNLEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVD-NFTIP 75 (638)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~ 75 (638)
..+.+..++..+...+...|++++|...++.+ ..+......+...|++++|...|+.+.+.+ |+ ...+.
T Consensus 222 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~ 299 (899)
T TIGR02917 222 LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALL 299 (899)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHH
Confidence 34457777888888888888888888888776 222223334455677777777777766543 22 22233
Q ss_pred HHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCC
Q 006627 76 TILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGL 152 (638)
Q Consensus 76 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 152 (638)
.+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.+ .+...+..+...+.+.|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Confidence 33344555666666666666665543 33445555555555566666666665555433 233445555555555556
Q ss_pred chHHHHHHHHhHHCCCcCCHhhHHHHHHH----------------------------------hcccCchHHHHHHHHHH
Q 006627 153 PEEALEVMREMRFMDIRPSEVAMISMVSL----------------------------------FADVADVDLGKAIHACV 198 (638)
Q Consensus 153 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~----------------------------------~~~~~~~~~a~~~~~~~ 198 (638)
+++|.++|+++.+.. +.+...+..+... +...|+.+.|..++..+
T Consensus 379 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 666655555554431 1122233333334 44444444554444444
Q ss_pred HHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627 199 VRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275 (638)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 275 (638)
....+. ++.++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.+ +.+.
T Consensus 458 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 458 EKKQPD---NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHhCCC---CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 443222 445566666666666666666666665543 223345555666666666666666666666542 2344
Q ss_pred HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHH
Q 006627 276 ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYA 352 (638)
Q Consensus 276 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 352 (638)
.++..+...+.+.|+.+.+...++.+.+.+ +.+...+..++..+...|++++|..+++.+.+ .+...|..+...+.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 556666666666777777777776666554 34455566677777777777777777776653 24556777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006627 353 QAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYR 432 (638)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 432 (638)
..|++++|...|+++.+.. +.+...+..+...+...|+++.|..+++.+.+.. +.+...+..++..+...|++++|.+
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776543 3344556666777777777888877777777654 5556777777777777888888887
Q ss_pred HHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC
Q 006627 433 LFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL 509 (638)
Q Consensus 433 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 509 (638)
+++.+.. .+...+..+...+...|++++|...++++... .|+..++..+..++.+.|++++|.+.++++.+ ..
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~ 766 (899)
T TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--TH 766 (899)
T ss_pred HHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 7777652 24556777778888888888888888888876 45557777788888888999999998888886 45
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627 510 VPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN 587 (638)
Q Consensus 510 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 587 (638)
+.+...+..+...+...|++++|.+.|+++ . .++++.++..+...+...|+ .+|+..+++++++.|+++..+..++.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 567788888899999999999999999988 3 34467888889999999999 88999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 588 IYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
++...|++++|.++++++.+.++.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999877654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.7e-27 Score=263.23 Aligned_cols=580 Identities=11% Similarity=0.016 Sum_probs=418.4
Q ss_pred chHhhhhHHHhhhhcCChhHHHHhhhhh--------hc----------------HHHHHHHHHhCCCchhHHHHHHHHHH
Q 006627 9 NLEQTRQCHAHIIKTHFKFSYTNIINPL--------TR----------------YNSLVTSYIKNNKPSSALNIYAFMRK 64 (638)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~----------------~~~ll~~~~~~~~~~~a~~~~~~m~~ 64 (638)
|..++..+...+.+.|+.++|.+.++++ .. ...+.+.+...|++++|+..|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 6777777777778888888888877777 11 12223356677888888888888776
Q ss_pred CCCCCCcccHHHHHH-HHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCc------
Q 006627 65 NGSEVDNFTIPTILK-ACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDV------ 137 (638)
Q Consensus 65 ~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------ 137 (638)
.+ +|+...-..... .....++.++|.+.++.+.+.. +.+...+..+...+...|+.++|+..++++.+...
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 53 333221111111 1223477778888888877765 55666777777777777888888887777643111
Q ss_pred chH-----------------HHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHH
Q 006627 138 VSW-----------------STMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVR 200 (638)
Q Consensus 138 ~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (638)
..| ...+..+-.......|...+..+......|+... ...-..+...|++++|...++..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011 1111111111123344444444433222233221 1223445678999999999999998
Q ss_pred hccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--CCcc---cHH------------HHHHHHHhCCChHHHHHHH
Q 006627 201 NCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--NSVV---SWT------------VMISGYIRCNEINEGVRLF 263 (638)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~------------~li~~~~~~g~~~~a~~~~ 263 (638)
..+. +..++..+...+.+.|++++|+..|++..+ |+.. .|. .....+.+.|++++|.+.|
T Consensus 298 ~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 298 ANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7665 678889999999999999999999998765 3221 121 2234677899999999999
Q ss_pred HHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC---
Q 006627 264 AEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKD--- 340 (638)
Q Consensus 264 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 340 (638)
++..+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+. .++.++|..+++.+....
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 9998863 2345566778888999999999999999998765 334556666777664 467899999998776431
Q ss_pred ---------chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC-ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 006627 341 ---------VMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRP-NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD 410 (638)
Q Consensus 341 ---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (638)
...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++.+.+.. +.+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~ 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PND 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 123455667788899999999999998875 45 44566677888999999999999999998754 455
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHcCCCCC----c---------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006627 411 VILKTALVDMYAKCGDVNGAYRLFSEAIYRD----I---------CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG 477 (638)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 477 (638)
...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..+++. .+++.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 5666666667788999999999999876321 1 1123456678889999999999872 25566
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS 555 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 555 (638)
..+..+...+.+.|++++|.+.|+++.+ ..+.+...+..++.++...|++++|++.++.. ...| +...+..+..++
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 7788889999999999999999999987 34456788899999999999999999999987 3455 456677788888
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYG------YNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
...|++++|.+.++++++..|+++. .+..++.++...|++++|+..|++...
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999998776543 666789999999999999999998853
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.6e-26 Score=259.01 Aligned_cols=587 Identities=11% Similarity=0.011 Sum_probs=434.4
Q ss_pred hhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccH----------
Q 006627 13 TRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTI---------- 74 (638)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---------- 74 (638)
.-..++.+...++.+.|.+.++++ ..+..+...+.+.|+.++|...++++.+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 445567888999999999999998 778888999999999999999999999864 444322
Q ss_pred -------HHHHHHHHcccCchHHHHHHHHHHHhCCCCChhH-HHHHHHhhhcCCChhHHHHHhccCCC--C-CcchHHHH
Q 006627 75 -------PTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYV-SNALIQMYSECGSLVSARYLFDEMPN--R-DVVSWSTM 143 (638)
Q Consensus 75 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 143 (638)
..+.+.+...|++++|.+.++.+.+.+ +|+... ...........|+.++|+..++++.+ | +...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 233346778899999999999998765 444332 11222223346899999999999876 4 45577888
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCc----------------CCHh---hHHHHHHHhcccCchHHHHHHHHHHHHhccC
Q 006627 144 IRGYHRGGLPEEALEVMREMRFMDIR----------------PSEV---AMISMVSLFADVADVDLGKAIHACVVRNCKD 204 (638)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 204 (638)
...+...|+.++|+..++++...... ++.. .+...+..+-.......+...+.........
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 89999999999999999998653210 0000 1111122222222334444444444333222
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh-HhH--
Q 006627 205 EKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE-ITI-- 278 (638)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~-- 278 (638)
+ .. ........+...|++++|+..|++..+ | +...+..+...+.+.|++++|...|++..+....... ..+
T Consensus 268 p--~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 268 P--AF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred c--ch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 2 21 122445677889999999999998875 3 5567888999999999999999999998875432211 111
Q ss_pred ----------HHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHH
Q 006627 279 ----------LSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWN 345 (638)
Q Consensus 279 ----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 345 (638)
......+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|++.|++..+. +...+.
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 122345678899999999999999875 445667778899999999999999999987743 444566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcC--------CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHH
Q 006627 346 AVISAYAQAHCIDKAFELFIHMKVSKVR--------PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTAL 417 (638)
Q Consensus 346 ~li~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 417 (638)
.+...+. .++.++|+..++.+...... .....+..+...+...|++++|.+.+++..+.. |.+..++..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666664 46789999988765432100 011234455667788999999999999999876 5667788889
Q ss_pred HHHHHhcCCHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH---------HHHHHHH
Q 006627 418 VDMYAKCGDVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI---------TFIGLLN 485 (638)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~~ 485 (638)
...|.+.|++++|...++++.. | +...+..+...+...++.++|+..++.+......++.. .+.....
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999998752 3 45555555566778899999999998765432222221 2334566
Q ss_pred HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHH
Q 006627 486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 563 (638)
.+...|+.++|.++++. .+++...+..+...+.+.|++++|++.++++ ...| +...+..++..+...|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 78899999999998872 2345566778899999999999999999998 4455 57889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCC
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEP 614 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 614 (638)
|++.++++.+..|+++..+..++.++...|++++|.++++++.+......|
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 999999999999999999999999999999999999999999876544443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5.4e-23 Score=219.84 Aligned_cols=558 Identities=10% Similarity=-0.037 Sum_probs=367.3
Q ss_pred hhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHH
Q 006627 20 IIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGK 91 (638)
Q Consensus 20 ~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 91 (638)
+...|++++|++.|+.+ ..+..|...|...|++++|+..+++..+. .|+...|..++..+ +++++|.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 33459999999999988 88899999999999999999999999986 45555555544333 8899999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHh--------hhcCCChhHHHHHhccCCCCC--cchHHHH-HHHHHhCCCchHHHHHH
Q 006627 92 EIHGFAIKNGLDGDAYVSNALIQM--------YSECGSLVSARYLFDEMPNRD--VVSWSTM-IRGYHRGGLPEEALEVM 160 (638)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~ 160 (638)
.+++++.+.. |-+..++..+... |.+.++...++. .....|+ ....... ...|.+.|++++|++.+
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999886 5556666666665 777666666666 2223343 4444444 88999999999999999
Q ss_pred HHhHHCCCcCCHhhHHHHHHHhcc-cCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--
Q 006627 161 REMRFMDIRPSEVAMISMVSLFAD-VADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-- 237 (638)
Q Consensus 161 ~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 237 (638)
.++.+.+.. +..-...+-.++.. .++ +.+..++.. .... ++.+...+...|.+.|+.++|.++++++..
T Consensus 206 ~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~--d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 206 NEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFT--DPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hccc--CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 999997522 23334445556655 355 666666432 2222 888999999999999999999999998873
Q ss_pred ---CCccc------------------------------HHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627 238 ---NSVVS------------------------------WTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIE 284 (638)
Q Consensus 238 ---~~~~~------------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 284 (638)
|...+ .-.++..+.+.++++.+.++.. +.|.... ..++.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~ 349 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERY 349 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHH
Confidence 11111 1112455666676665554421 3444443 23332
Q ss_pred hc--ccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC-C-----CchhHHHHHHHHHhcCC
Q 006627 285 CG--FVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS-K-----DVMIWNAVISAYAQAHC 356 (638)
Q Consensus 285 ~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~ 356 (638)
.. ..+...++...+..|.+.. +-+......+.-.....|+.++|..+|....+ + +....+.++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 22 2345555555555555442 23444445555556677888888888877654 1 12233455666655544
Q ss_pred ---HHHHHHH----------------------HHHHHH-cCcCC---ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 006627 357 ---IDKAFEL----------------------FIHMKV-SKVRP---NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGL 407 (638)
Q Consensus 357 ---~~~a~~~----------------------~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 407 (638)
..++..+ +..... .+..| +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 3333222 111111 11112 33444555544444 67777887766666543
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627 408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY--RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN 485 (638)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 485 (638)
|+......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+++..+.. +++...+..+..
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4443333444455678888888888876552 344455666677778888888888888887754 333333444444
Q ss_pred HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627 486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 563 (638)
.+...|++++|...+++..+ ..|+...+..+..++.+.|+.++|...+++. ...|+ ...+..+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 45566888888888888874 3456777778888888888888888888877 45554 5666777777888888888
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
|+..++++++++|+++.++..++.++...|++++|+..+++..+..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888775433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.9e-22 Score=215.73 Aligned_cols=585 Identities=9% Similarity=-0.022 Sum_probs=404.6
Q ss_pred cCCcchHhhhhHHHhhhhcCChhHHHHhhhhh-------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHH
Q 006627 5 NGFLNLEQTRQCHAHIIKTHFKFSYTNIINPL-------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTI 77 (638)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 77 (638)
..+.|..++..|...|...|++++|+..+++. ..|..++..+ +++++|..+|+++.... |-+...+..+
T Consensus 73 ~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~l 148 (987)
T PRK09782 73 QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLR 148 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHH
Confidence 34558889999999999999999999999988 3333333333 88899999999998864 2233444444
Q ss_pred HHHH-----HcccCchHHHHHHHHHHHhCCCCChhHHHHH-HHhhhcCCChhHHHHHhccCCCC---CcchHHHHHHHHH
Q 006627 78 LKAC-----AQVLMTHLGKEIHGFAIKNGLDGDAYVSNAL-IQMYSECGSLVSARYLFDEMPNR---DVVSWSTMIRGYH 148 (638)
Q Consensus 78 l~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 148 (638)
.... ....+.++|.+.++ .......|++.+.... ...|.+.|++++|+..++++.+. +..-...|..+|.
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~ 227 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLL 227 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4430 11233455666665 3333334445555555 78888888888888888877652 2233455556666
Q ss_pred h-CCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCC--------------------
Q 006627 149 R-GGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKL-------------------- 207 (638)
Q Consensus 149 ~-~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------- 207 (638)
. .++ +++..+++. .++-+......+...+...|+.+.|..++..+.......+.
T Consensus 228 q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 228 AGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred HhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 6 355 666666442 23456677777777788888888877777665433222100
Q ss_pred ------ch---hHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhH
Q 006627 208 ------GV---AIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI 278 (638)
Q Consensus 208 ------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (638)
.. .....++..+.+.++++.+.++.. ....+. ..-.-..+....+...++...+..|.+.. +-+....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l 379 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRL 379 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHH
Confidence 01 112233677788888887777744 222222 22111122223466777777777776641 2244444
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHHh-c-CCCchhhHHHHHHHHHhcCC---hHHHHHH---------------------
Q 006627 279 LSLIIECGFVGGLQLGKWLHAYILRN-G-FEFSLAMANALVDMYGKCRE---IRSARTL--------------------- 332 (638)
Q Consensus 279 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~--------------------- 332 (638)
..+.......|+.++|.++++..... + -.++......++..|.+.+. ...+..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 44555566788899999998887662 1 22344455577777777665 3333222
Q ss_pred ----HhcCCC---C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHH
Q 006627 333 ----FDGMKS---K--DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIE 403 (638)
Q Consensus 333 ----~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (638)
+..... + +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++.+.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 111111 1 44566777777766 7888999988877654 4665554444555678999999999999876
Q ss_pred HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCcHHHH
Q 006627 404 KQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMM---AGYGMHGCGEEALIFFVDMERSGVKPNGITF 480 (638)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 480 (638)
.. +|+...+..+...+.+.|++++|...+++....++...+... ......|++++|...+++..+. .|+...+
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~ 612 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAY 612 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHH
Confidence 54 455555667788889999999999999887755444333333 3344559999999999999976 5778889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc
Q 006627 481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH 558 (638)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 558 (638)
..+..++.+.|++++|...+++... ..+.+...+..+..++...|++++|+..++++ ...| ++..+..+..++...
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999986 34445678888889999999999999999988 5556 578889999999999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 559 KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 559 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
|++++|+..++++++++|+++.+....+++..+..++..|.+.+++.-.-.+.
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999988866544443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.9e-21 Score=183.23 Aligned_cols=463 Identities=15% Similarity=0.135 Sum_probs=349.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHH-HHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006627 141 STMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMV-SLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMY 219 (638)
Q Consensus 141 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (638)
..|..-..+.|++++|.+.-...-+. .|+..--..++ ..+....+.+....--....+..+. -..+|..+.+.+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q---~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ---GAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccch---HHHHHHHHHHHH
Confidence 34445555667777776654433322 12221111122 2222333333322222222222222 467888899999
Q ss_pred HhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHH-HhcccCChhhHH
Q 006627 220 SKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLII-ECGFVGGLQLGK 295 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~ 295 (638)
-..|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+. ..-..|++.+|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999988875 3457888999999999999999999988877 4566655443333 334478888888
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 006627 296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHCIDKAFELFIHMKVSKV 372 (638)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 372 (638)
..|...++... --...|..|...+-..|+...|+..|++..+-|+ ..|-.|...|-..+.+++|...+.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 88888776542 2345677788888899999999999999876543 47888889999999999999999887653
Q ss_pred CCCh-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHH
Q 006627 373 RPNE-VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAM 448 (638)
Q Consensus 373 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 448 (638)
.|+. ..+..+...|-..|.++.|+..+++..+.. |.-+..|+.|..++...|++.+|.+.|.+.. .....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 5654 466667777888999999999999998865 4457889999999999999999999999876 3356788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhc
Q 006627 449 MAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRA 526 (638)
Q Consensus 449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 526 (638)
...+...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|+..|++.+ .++|+. ..|+.+...|...
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999886 46655 678999999999999999999999997 577875 7899999999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH----HH
Q 006627 527 GLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV----AG 600 (638)
Q Consensus 527 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A----~~ 600 (638)
|+.+.|.+.+.++ .+.|. ...+..|...|...|+..+|++.|+.++++.|+.+.++-.++-++--..+|.+= .+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999888 67775 678889999999999999999999999999999999999998887776666652 22
Q ss_pred HHHHHhh-----cCCcCCCCeeEE
Q 006627 601 VRRVMKE-----IRVKKEPGFSSV 619 (638)
Q Consensus 601 ~~~~~~~-----~~~~~~~~~~~~ 619 (638)
+++-.++ +-+...|+.+.+
T Consensus 516 l~sivrdql~~~rlpsvhP~hsm~ 539 (966)
T KOG4626|consen 516 LVSIVRDQLEKNRLPSVHPHHSML 539 (966)
T ss_pred HHHHHHHHHhhhcCCccCcccccc
Confidence 2222222 336666766654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=7.9e-20 Score=192.75 Aligned_cols=420 Identities=11% Similarity=-0.027 Sum_probs=268.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006627 139 SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDM 218 (638)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (638)
.+......+.+.|++++|++.|++... +.|+...|..+-.++...|+++.|...+...++..+. +...+..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD---YSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHH
Confidence 345567778888999999999988776 4677667766766777777777777777776665544 45566666666
Q ss_pred HHhcCChHHHHHHHhccCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHH
Q 006627 219 YSKCGNLAYAKQLFNRLNQNSV---VSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGK 295 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 295 (638)
|...|++++|...|......+. .....++..+.. ..+........+. .
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~----------------------- 254 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--K----------------------- 254 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--C-----------------------
Confidence 6677777666665543321110 000011110000 1111111111111 0
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 006627 296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISA---YAQAHCIDKAFELFIHMKV 369 (638)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~ 369 (638)
+.+...+..+.. +...........-+....+.+. ..+..+... ....+++++|.+.|++...
T Consensus 255 -----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~ 322 (615)
T TIGR00990 255 -----------PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALD 322 (615)
T ss_pred -----------CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 111111111111 1111111111111111111111 111111111 1234678888888888776
Q ss_pred cC-cCCC-hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchh
Q 006627 370 SK-VRPN-EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICM 444 (638)
Q Consensus 370 ~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~ 444 (638)
.+ ..|+ ...+..+...+...|+++.|...++...+.. +.....|..+...+...|++++|...|++.. ..+...
T Consensus 323 ~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 323 LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 54 2333 3456666667778888999998888888764 4446677788888888899999998888765 235678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG 524 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (638)
|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+ ..+.+...++.+..++.
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 8888888899999999999999988763 44556777888888999999999999999886 34445678888899999
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-hh-------HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627 525 RAGLLDEAHEMIKSM-PLRPNM-IV-------WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW 595 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 595 (638)
..|++++|++.|++. ...|+. .. +......+...|++++|...++++++++|++...+..++.++...|++
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 999999999999886 444431 11 111122233468999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 006627 596 NDVAGVRRVMKEI 608 (638)
Q Consensus 596 ~~A~~~~~~~~~~ 608 (638)
++|+++|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=5.9e-21 Score=181.17 Aligned_cols=415 Identities=13% Similarity=0.099 Sum_probs=335.5
Q ss_pred HHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCCh
Q 006627 180 SLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEI 256 (638)
Q Consensus 180 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 256 (638)
....+.|++++|++.-..+-...+. +......+-..+....+.+.....-....+ ....+|..+...+-..|++
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d~t---~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQEDPT---NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccCCC---cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344567777777766555444433 233333344556666666654443322222 2346789999999999999
Q ss_pred HHHHHHHHHHHHcCccC-ChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchh-hHHHHHHHHHhcCChHHHHHHHh
Q 006627 257 NEGVRLFAEMIEENVFP-SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLA-MANALVDMYGKCREIRSARTLFD 334 (638)
Q Consensus 257 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~ 334 (638)
++|+++++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++.+ |+.. ...-+...+...|++.+|...|.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999985 45 45678889999999999999999999888754 4332 23344555566899999999988
Q ss_pred cCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 006627 335 GMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN-EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD 410 (638)
Q Consensus 335 ~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (638)
+... | =.+.|+.|...|-.+|+...|+..|++.... .|+ ...|..|-..|...+.++.|...+.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7664 3 2467999999999999999999999998753 454 3478888889999999999999998887765 566
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHH
Q 006627 411 VILKTALVDMYAKCGDVNGAYRLFSEAI--YRD-ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNA 486 (638)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~ 486 (638)
...+..+...|...|.++-|+..|++.. +|+ +..|+.|..++...|++.+|...+.+.... .|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 7888888889999999999999999877 443 469999999999999999999999998875 5554 688999999
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 563 (638)
+...|.+++|..+|.+..+ +.|. ....+.|...|..+|++++|+..++++ .++|. ..++..+.+.|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999999975 4555 367889999999999999999999998 78887 6889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
|.+.+.+++..+|.-+.++..|+.+|-..|+..+|++-++...+-.
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999886543
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.5e-18 Score=169.82 Aligned_cols=516 Identities=12% Similarity=0.042 Sum_probs=299.9
Q ss_pred cccCchHHHHHHHHHHHhC--CCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHH---HhC---CCch
Q 006627 83 QVLMTHLGKEIHGFAIKNG--LDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGY---HRG---GLPE 154 (638)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~---~~~---~~~~ 154 (638)
..+++..|..+|...+... .+||+.+ .+-..+.+.|+.+.|...|....+-|+...++++... ... ..+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 3345555555555544332 1223221 1122334555555555555554443332222222111 111 1233
Q ss_pred HHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 006627 155 EALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNR 234 (638)
Q Consensus 155 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 234 (638)
.+..++...-... .-++...+.|-..|.-.|++..+..+...+.........-...|-.+.++|...|+++.|...|..
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444443333221 234445555566666666666666666666655433222334455666667777777777766655
Q ss_pred cCC--CC--cccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccC----ChhhHHHHHHHHHHhcC
Q 006627 235 LNQ--NS--VVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVG----GLQLGKWLHAYILRNGF 306 (638)
Q Consensus 235 ~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~ 306 (638)
... ++ +..+--+...+++.|+++.+...|+..... .+-+..|...+...|+..+ ..+.|..++....+.-
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 543 22 233445566666777777777777666654 2233345555555555443 2233333333333322
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhcC--------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CcCCC
Q 006627 307 EFSLAMANALVDMYGKCREIRSARTLFDGM--------KSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVS---KVRPN 375 (638)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~ 375 (638)
+.|...|..+...+... ++..++..|... ....+...|.+...+...|++.+|...|...... ...++
T Consensus 411 ~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 34455555555554433 222223333222 1234556777777778888888888888776543 12222
Q ss_pred hh------hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHH
Q 006627 376 EV------TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWN 446 (638)
Q Consensus 376 ~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 446 (638)
.. +-..+....-..++.+.|.+.+..+.+.. |.-+..|-.+..+....++..+|..++..+. +.++..+.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 21 12233344555667888888888877753 2223344444433344567778888887665 44666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhc------------cCcHHHHHHHHHHHhhhcCCCCCh
Q 006627 447 AMMAGYGMHGCGEEALIFFVDMERS-GVKPNGITFIGLLNACSH------------AGLVTEGKSVFDKMVHGLGLVPKI 513 (638)
Q Consensus 447 ~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~p~~ 513 (638)
.+...+.....+..|.+-|+...+. ...+|..+...|...|.+ .+..++|++.|.++++ ..+.|.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~ 646 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM 646 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 7777777777777777766665543 123566666666665532 2345678888887776 455677
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC--CCCcchHHHHHHHH
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSMP--LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE--PQNYGYNVLMSNIY 589 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 589 (638)
..-+-++-+++..|++.+|..+|.+.. ......+|..+...|...|++..|++.|+.+.+.. -+++.+...|+.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 778888888999999999999998872 22356788888899999999999999999998732 34678889999999
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 006627 590 AVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~ 607 (638)
++.|+|.+|.+++.....
T Consensus 727 y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 999999999998776654
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.6e-18 Score=169.27 Aligned_cols=573 Identities=12% Similarity=0.038 Sum_probs=409.4
Q ss_pred hhHHHHhhhhh--hcHH----HHHHHH--HhCCCchhHHHHHHHHHHCC--CCCCcccHHHHHHHHHcccCchHHHHHHH
Q 006627 26 KFSYTNIINPL--TRYN----SLVTSY--IKNNKPSSALNIYAFMRKNG--SEVDNFTIPTILKACAQVLMTHLGKEIHG 95 (638)
Q Consensus 26 ~~~A~~~~~~~--~~~~----~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 95 (638)
.+.|.+.|.-+ .+.. .|..++ ...+++..|+.+|....... .+||.. -.+-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 58888888877 2222 233333 35789999999999976643 344443 233456678899999999999
Q ss_pred HHHHhCCCCChhHHHHHHHhhhcCC---ChhHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCc
Q 006627 96 FAIKNGLDGDAYVSNALIQMYSECG---SLVSARYLFDEMP---NRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIR 169 (638)
Q Consensus 96 ~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (638)
...+.+ |-++.++-.|--.-.... .+..+...+...- ..|+...+.|...|...|+++.++.+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 999875 233333333322222223 3444455544332 257888999999999999999999999988765311
Q ss_pred --CCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--CC-cccHH
Q 006627 170 --PSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--NS-VVSWT 244 (638)
Q Consensus 170 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~ 244 (638)
.-...|-.+-+++-..|+++.|...+....+..... ....+..+...|.+.|+++.+...|+.+.. || ..+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 224468888999999999999999999888876654 456677889999999999999999999875 33 34555
Q ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHH----HHHhcCCCchhhHHHH
Q 006627 245 VMISGYIRCN----EINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAY----ILRNGFEFSLAMANAL 316 (638)
Q Consensus 245 ~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l 316 (638)
.+...|...+ ..+.|..++.+..+.- +-|...|..+-..+.. ++.......+.. +...+-++.+.+.|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 5555555554 4566777766665542 3355566555555544 333333555554 4456667888999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-------Cc------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh-hHHHH
Q 006627 317 VDMYGKCREIRSARTLFDGMKSK-------DV------MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEV-TMVGL 382 (638)
Q Consensus 317 ~~~~~~~~~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l 382 (638)
...+...|++..|...|++.... +. .+--.+...+-..++++.|.+.|..+... .|+-. .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999876532 22 12223445556677899999999998775 45443 33344
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC-----CCCchhHHHHHHHHHh---
Q 006627 383 LSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI-----YRDICMWNAMMAGYGM--- 454 (638)
Q Consensus 383 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~--- 454 (638)
.......++..+|...+......+ ..++..++.+...+.+...+..|.+-|..+. .+|+.+.-.|...+.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 333344578888888888888765 6677777778888888888888877554433 3355555555554432
Q ss_pred ---------cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 455 ---------HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 455 ---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
.+..++|+++|.+.+... +-|...-+-+.-+++..|++.+|..+|....+. ......+|-.+..+|..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHH
Confidence 245678999999988764 556677778888889999999999999999884 33345577889999999
Q ss_pred cCChHHHHHHHHhC----CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH-----------
Q 006627 526 AGLLDEAHEMIKSM----PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA----------- 590 (638)
Q Consensus 526 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----------- 590 (638)
+|++-.|++.|+.. ....++.....|..++...|.+.+|...+..+..+.|.++...+.++-+..
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999876 223468888999999999999999999999999999999888777765543
Q ss_pred --------hcCCHHHHHHHHHHHhhcCCc
Q 006627 591 --------VANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 591 --------~~g~~~~A~~~~~~~~~~~~~ 611 (638)
..+..+.|.++|..|.+.+.+
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345677888888888776554
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=5.9e-20 Score=184.23 Aligned_cols=293 Identities=13% Similarity=0.071 Sum_probs=207.5
Q ss_pred HHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC---hhhHHHHHHHHhccCchH
Q 006627 320 YGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN---EVTMVGLLSLCTEAGALE 393 (638)
Q Consensus 320 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~ 393 (638)
+...|++++|...|.++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455666666666655432 233455566666666666666666666655321111 133455556666666777
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc--------hhHHHHHHHHHhcCChHHHHHHH
Q 006627 394 MGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI--------CMWNAMMAGYGMHGCGEEALIFF 465 (638)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~ 465 (638)
.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+. ..+..+...+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7776666666543 44555666666777777777777777666542211 13455667778889999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 006627 466 VDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN 544 (638)
Q Consensus 466 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 544 (638)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .-......+..++.+|...|++++|.+.++++ ...|+
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9988763 334567888888999999999999999999863 21122456788899999999999999999988 55777
Q ss_pred HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCcCCCCe
Q 006627 545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV---ANRWNDVAGVRRVMKEIRVKKEPGF 616 (638)
Q Consensus 545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 616 (638)
...+..++..+...|++++|...++++++..|++.... .+...+.. .|+.++|...+++|.+++++++|.+
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 77778888999999999999999999999999976444 44444432 5699999999999999999999974
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.2e-18 Score=178.15 Aligned_cols=371 Identities=10% Similarity=-0.038 Sum_probs=270.8
Q ss_pred HhcCChHHHHHHHhccCC------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhh
Q 006627 220 SKCGNLAYAKQLFNRLNQ------NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQL 293 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 293 (638)
.+..+++...-.|..-.+ .+..-...++..+.+.|++++|..+++........+ ......+..+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 345555555555555443 122345567778888999999999999888864443 3334445566667899999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006627 294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVS 370 (638)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 370 (638)
|...++.+.+.. |.+...+..+...+...|++++|...+++... | +...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999888765 44566778888888999999999999988764 3 4567788888899999999999999887654
Q ss_pred CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHH
Q 006627 371 KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNA 447 (638)
Q Consensus 371 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 447 (638)
. |+.......+..+...|++++|...++.+.+....++......+...+...|++++|...+++... .+...+..
T Consensus 174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3 333222222334678899999999998887764334444555566788889999999999987662 25567778
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627 448 MMAGYGMHGCGEE----ALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL 523 (638)
Q Consensus 448 l~~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (638)
+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..++
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 8888899998885 788999888763 335578888888999999999999999998862 333456677788889
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHhh-HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627 524 GRAGLLDEAHEMIKSM-PLRPNMIV-WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 601 (638)
.+.|++++|...++++ ...|+... +..+..++...|+.++|...++++++.+|++. ..+|++|...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~ 396 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLA 396 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHH
Confidence 9999999999999887 45565433 33456677889999999999999999999864 2444556666
Q ss_pred HHHHhhcC
Q 006627 602 RRVMKEIR 609 (638)
Q Consensus 602 ~~~~~~~~ 609 (638)
+....+.-
T Consensus 397 ~~~~~~~~ 404 (656)
T PRK15174 397 LDGQISAV 404 (656)
T ss_pred HHHHHHhc
Confidence 66555433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1e-17 Score=175.97 Aligned_cols=356 Identities=10% Similarity=-0.048 Sum_probs=280.1
Q ss_pred HhCCChHHHHHHHHHHHHcC--ccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHH
Q 006627 251 IRCNEINEGVRLFAEMIEEN--VFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRS 328 (638)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (638)
.+..+|+...-+|..-.++. -.-+......++..+.+.|+.+.|..+++........+ ......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 34556665555554433220 11223345567778889999999999999998876444 4445556677778999999
Q ss_pred HHHHHhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627 329 ARTLFDGMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ 405 (638)
Q Consensus 329 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (638)
|...++++.. | +...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999864 3 55678888899999999999999999988652 334556778888999999999999999988776
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 006627 406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFI 481 (638)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 481 (638)
. +.+...+..+ ..+...|++++|...++.+... +...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 5 3333344333 3478899999999999987643 23344556778889999999999999999864 44567888
Q ss_pred HHHHHHhccCcHHH----HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHH
Q 006627 482 GLLNACSHAGLVTE----GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAAS 555 (638)
Q Consensus 482 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 555 (638)
.+...+...|++++ |...++++.+ -.+.+...+..+...+...|++++|...++++ ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89999999999986 8999999986 33445678889999999999999999999988 45564 56777888999
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE 613 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (638)
...|++++|+..++++.+.+|+++..+..++.++...|++++|+..|++..+..+...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999999887777889999999999999999999877665543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=5.3e-17 Score=174.42 Aligned_cols=387 Identities=10% Similarity=0.038 Sum_probs=218.0
Q ss_pred HHHHHHhcCChHHHHHHHhccCC-C--CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCC-hHhHHHHHHHhcccCC
Q 006627 215 LIDMYSKCGNLAYAKQLFNRLNQ-N--SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPS-EITILSLIIECGFVGG 290 (638)
Q Consensus 215 l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 290 (638)
.+....-.|+.++|++++..... . +...+..+...+...|++++|.++|++..+. .|+ ......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33444444555555544444432 1 1122444444455555555555555554442 122 2233334444444555
Q ss_pred hhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 291 LQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHM 367 (638)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 367 (638)
.++|...++.+.+.. +.+.. +..+...+...|+.++|...++++.+. +...+..+...+...+..++|++.++..
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 555555555544442 22233 444555555555555555555554421 2233344444555555555555555443
Q ss_pred HHcCcCCCh------hhHHHHHHHH-----hccCch---HHHHHHHHHHHHh-CCCCccc-HHH-H---HHHHHHhcCCH
Q 006627 368 KVSKVRPNE------VTMVGLLSLC-----TEAGAL---EMGKWLHTYIEKQ-GLEVDVI-LKT-A---LVDMYAKCGDV 427 (638)
Q Consensus 368 ~~~g~~p~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~-~---l~~~~~~~~~~ 427 (638)
.. .|+. .....++... ...+++ +.|...++.+.+. ...|+.. .+. . .+.++...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 32 1211 0011111111 111223 5566666666643 1122221 111 1 12234556778
Q ss_pred HHHHHHHHcCCCCC---ch-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccCcHHHHHH
Q 006627 428 NGAYRLFSEAIYRD---IC-MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN-----GITFIGLLNACSHAGLVTEGKS 498 (638)
Q Consensus 428 ~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~ 498 (638)
++|+..|+.+...+ +. ....+...+...|++++|+..|+++.+.. |. ......+..++...|++++|.+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 88888887776432 11 12224567778888888888888876542 22 2345566667788888888888
Q ss_pred HHHHHhhhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHH
Q 006627 499 VFDKMVHGLG----------LVPK---IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 499 ~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 563 (638)
+++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 8888775310 0122 123455677888889999999998887 3344 56777888888888899999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
|++.++++++++|++...+..++.++...|++++|+.+++.+.+..+
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999888888999999999999999999888876543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.3e-16 Score=171.46 Aligned_cols=367 Identities=11% Similarity=0.009 Sum_probs=243.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHh
Q 006627 209 VAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIEC 285 (638)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 285 (638)
...+..+...+...|++++|..+|+...+ .+...+..+...+...|++++|...+++..+. .|+...+..+...+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l 126 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVY 126 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 33445555555555666666555555332 22334445555566666666666666666554 22222254555555
Q ss_pred cccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch--------hHHHHHHHHH-----
Q 006627 286 GFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVM--------IWNAVISAYA----- 352 (638)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~----- 352 (638)
...|+.+.|...++.+.+.. +.+...+..+...+...+..+.|...++.... ++. ....++....
T Consensus 127 ~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccC
Confidence 56666666666666666553 22444445566667777777878877776664 211 1112222221
Q ss_pred hcCCH---HHHHHHHHHHHHc-CcCCChh-hHH----HHHHHHhccCchHHHHHHHHHHHHhCCC-CcccHHHHHHHHHH
Q 006627 353 QAHCI---DKAFELFIHMKVS-KVRPNEV-TMV----GLLSLCTEAGALEMGKWLHTYIEKQGLE-VDVILKTALVDMYA 422 (638)
Q Consensus 353 ~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 422 (638)
..+++ ++|++.++.+... ...|+.. .+. ..+.++...|+.++|+..|+.+.+.+.+ |+ .....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 12233 6788888888754 2233322 111 1133455778999999999999887522 22 12233577899
Q ss_pred hcCCHHHHHHHHHcCCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCcH---HHHH
Q 006627 423 KCGDVNGAYRLFSEAIYRD-------ICMWNAMMAGYGMHGCGEEALIFFVDMERSG-----------VKPNG---ITFI 481 (638)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~~---~~~~ 481 (638)
..|++++|+..|+++...+ ......+..++...|++++|..+++++.+.. -.|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 9999999999998876332 2345556678889999999999999988752 11332 3456
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcC
Q 006627 482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHK 559 (638)
Q Consensus 482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~ 559 (638)
.+...+...|++++|++.++++.. ..+.+...+..+...+...|++++|++.++++ ...|+ ...+......+...|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 677788899999999999999987 45566788889999999999999999999998 56675 566677777888999
Q ss_pred ChHHHHHHHHHHhccCCCCcchH
Q 006627 560 NPSMGEIAATQILEIEPQNYGYN 582 (638)
Q Consensus 560 ~~~~A~~~~~~~~~~~p~~~~~~ 582 (638)
++++|+..++++++..|+++.+.
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999987544
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=9.9e-18 Score=168.14 Aligned_cols=294 Identities=14% Similarity=0.106 Sum_probs=187.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCh
Q 006627 247 ISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREI 326 (638)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (638)
...+...|++++|...|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------- 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ--------------- 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---------------
Confidence 334556677777777777777652 1223345445555555555555555555544422111000
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 006627 327 RSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQG 406 (638)
Q Consensus 327 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 406 (638)
....+..+...|...|++++|..+|+++.+.. +++..++..+...+...|++++|.+.++.+.+.+
T Consensus 106 -------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 106 -------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred -------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 01234455556666666666666666665431 2344455566666666666666666666665543
Q ss_pred CCCc----ccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 006627 407 LEVD----VILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT 479 (638)
Q Consensus 407 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 479 (638)
..+. ...+..+...+.+.|++++|...++++.+ | +...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 2111 11334556666777777777777776552 2 344666777888888888888888888887532222456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhh-
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKL- 557 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~- 557 (638)
+..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++ ...|+...+..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 778888888899999999999988753 466666778888888999999999998876 567888888777766553
Q ss_pred --cCChHHHHHHHHHHhc
Q 006627 558 --HKNPSMGEIAATQILE 573 (638)
Q Consensus 558 --~~~~~~A~~~~~~~~~ 573 (638)
.|+.+++...++++++
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 4577888888877765
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=8.1e-16 Score=161.80 Aligned_cols=437 Identities=12% Similarity=0.044 Sum_probs=292.0
Q ss_pred HHcccCchHHHHHHHHHHHhCCCCC-hhHHHHHHHhhhcCCChhHHHHHhccCCCCCcc-hHHHH--HHHHHhCCCchHH
Q 006627 81 CAQVLMTHLGKEIHGFAIKNGLDGD-AYVSNALIQMYSECGSLVSARYLFDEMPNRDVV-SWSTM--IRGYHRGGLPEEA 156 (638)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a 156 (638)
..+.|+++.|...|++..+.. +-+ +.++ .++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456777778888887777664 222 2333 6777777778888888887777765433 33333 3456666888888
Q ss_pred HHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccC
Q 006627 157 LEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLN 236 (638)
Q Consensus 157 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 236 (638)
+++|+++.+. .|+ ++.++..++..+...++.++|++.++.+.
T Consensus 122 iely~kaL~~--dP~------------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 122 LALWQSSLKK--DPT------------------------------------NPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHhh--CCC------------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 8888877763 455 56666777888888899999999998888
Q ss_pred C--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccC-ChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhH
Q 006627 237 Q--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFP-SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMA 313 (638)
Q Consensus 237 ~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (638)
. |+...+..++..+...++..+|++.++++.+. .| +...+..+..+..+.|-...|.++... .|+..+-
T Consensus 164 ~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~ 235 (822)
T PRK14574 164 ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSA 235 (822)
T ss_pred ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCH
Confidence 6 44334433333333356665699999999886 34 344556666666677766666655543 1211111
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CcCCChh-hHH----HHHH
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHC---IDKAFELFIHMKVS-KVRPNEV-TMV----GLLS 384 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~-g~~p~~~-~~~----~ll~ 384 (638)
..... =+.+.|.+..+-...++. ....+ .+.|+.-++.+... +..|... .|. -.+-
T Consensus 236 ~~~~~-----l~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 236 EHYRQ-----LERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHH-----HHHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 10000 011112222211110000 00112 34455555554431 2223322 221 3345
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCC---------chhHHHHHHHHHhc
Q 006627 385 LCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRD---------ICMWNAMMAGYGMH 455 (638)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~ 455 (638)
++...|+..++++.++.+...+.+....+-..+.++|...+++++|..+|+++..++ ......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 777888999999999999988877667788889999999999999999998875322 22346788889999
Q ss_pred CChHHHHHHHHHHHHcCC-----------CCcH---HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627 456 GCGEEALIFFVDMERSGV-----------KPNG---ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD 521 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 521 (638)
+++++|..+++.+.+.-. .||+ ..+..++..+...|++.+|++.++++.. .-+-|......+..
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~ 458 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALAS 458 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 999999999999887311 1332 2345567778899999999999999976 56668888889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchH
Q 006627 522 LLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYN 582 (638)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 582 (638)
.+...|++.+|.+.++.+ ...|+ ..+....+.++...+++++|..+.+.+.+..|+++..-
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999877 45664 56667788888899999999999999999999987544
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.8e-16 Score=167.44 Aligned_cols=225 Identities=10% Similarity=-0.053 Sum_probs=131.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCC-hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627 347 VISAYAQAHCIDKAFELFIHMKVSKVRPN-EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG 425 (638)
Q Consensus 347 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (638)
+...+...|++++|+..+++.... .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 333344444444444444444332 222 2233344444444555555555555544433 334455555555666666
Q ss_pred CHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627 426 DVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK 502 (638)
Q Consensus 426 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 502 (638)
++++|...|++... | +...+..+..++.+.|++++|+..+++..... +.+...+..+..++...|++++|.+.|++
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66666666655442 2 33455556666677777777777777776542 33456677777777778888888888877
Q ss_pred HhhhcCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 503 MVHGLGLVPKI-E-------HYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 503 ~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
..+. .|+. . .++.....+...|++++|.++++++ ...|+ ...+..+...+.+.|++++|+..++++.
T Consensus 493 Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 493 AIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7642 2211 1 1112222333468888888888775 44554 4567777888888888888888888888
Q ss_pred ccCCCC
Q 006627 573 EIEPQN 578 (638)
Q Consensus 573 ~~~p~~ 578 (638)
++.+..
T Consensus 570 ~l~~~~ 575 (615)
T TIGR00990 570 ELARTE 575 (615)
T ss_pred HHhccH
Confidence 877753
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.5e-14 Score=132.18 Aligned_cols=430 Identities=13% Similarity=0.099 Sum_probs=251.1
Q ss_pred HhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH--HcccCchH-HHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChh
Q 006627 47 IKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKAC--AQVLMTHL-GKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLV 123 (638)
Q Consensus 47 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 123 (638)
..+|.++++.-+|+.|.+.|++.+...-..|++.- .+..++.- -++.|-.|...| +.+..+| +.|++.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 44566667777777777766666665555544432 22222221 122333333333 2222222 223322
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhcc
Q 006627 124 SARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCK 203 (638)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 203 (638)
+ ++-+....+..+|..+|.++|+--..+.|.+++++......+.+..+|+.+|.+..-..+ +.+...|.....
T Consensus 197 d---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 197 D---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred H---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 2 333333356678888888888888888888888888777777788888777765432222 344444444444
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChH----HHHHHHHHHHHcCccCChHhHH
Q 006627 204 DEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEIN----EGVRLFAEMIEENVFPSEITIL 279 (638)
Q Consensus 204 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~p~~~~~~ 279 (638)
. ||..|+|+++++..+.|+++ .|.+++.+|++-|+.|...+|.
T Consensus 270 ~---------------------------------Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh 316 (625)
T KOG4422|consen 270 T---------------------------------PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH 316 (625)
T ss_pred C---------------------------------CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence 3 55556666666666666544 4567888899999999999999
Q ss_pred HHHHHhcccCChhh-HHHHHHHHHH----hcCCC----chhhHHHHHHHHHhcCChHHHHHHHhcCCCC-----------
Q 006627 280 SLIIECGFVGGLQL-GKWLHAYILR----NGFEF----SLAMANALVDMYGKCREIRSARTLFDGMKSK----------- 339 (638)
Q Consensus 280 ~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------- 339 (638)
.+|..+++.++..+ +..++.++.. ..++| +...|...+..|.+..+.+-|..+-.-+...
T Consensus 317 ~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~ 396 (625)
T KOG4422|consen 317 LIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH 396 (625)
T ss_pred HHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH
Confidence 99999888887754 3333333332 22322 3445666777788888888887776544421
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627 340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVD 419 (638)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (638)
...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..++|..+...|.........-+..
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 11235566677788888899999999998888889999999999999999999999999999888875444444333333
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 006627 420 MYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGM--HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGK 497 (638)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 497 (638)
.+++.. ..|+...-..+-....+ ..-.+.....-.+|.+...+| ...+.++-.+.+.|..++|.
T Consensus 477 ~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~ 542 (625)
T KOG4422|consen 477 LLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAW 542 (625)
T ss_pred HHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHH
Confidence 333322 01111111111111110 111112222233444443333 33444445566777777777
Q ss_pred HHHHHHhhhcCCCCChhHHH---HHHHHHHhcCChHHHHHHHHhC
Q 006627 498 SVFDKMVHGLGLVPKIEHYG---CMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
+++..+.+++.-.|-....+ .+++.-.+.+++.+|...++-|
T Consensus 543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777755433334444444 3334444556666666666555
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.3e-14 Score=152.92 Aligned_cols=405 Identities=9% Similarity=0.019 Sum_probs=194.5
Q ss_pred hhhcCChhHHHHhhhhh------h--cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcc---cHHHHHHHHHcccCch
Q 006627 20 IIKTHFKFSYTNIINPL------T--RYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNF---TIPTILKACAQVLMTH 88 (638)
Q Consensus 20 ~~~~g~~~~A~~~~~~~------~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~ 88 (638)
..+.|++..|++.|+++ . .-..++..+...|+.++|+..+++.. .|+.. ....+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33555555555555554 0 11144444555555555555555554 12111 1111123344445555
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 006627 89 LGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN--RDVVSWSTMIRGYHRGGLPEEALEVMREMRFM 166 (638)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 166 (638)
.|.++++.+.+.. +.++.++..++..+...++.++|+..++.+.. |+...+..++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~- 197 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR- 197 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH-
Confidence 5555555555544 33344444555555555555555555555443 2222222222222223333335555555554
Q ss_pred CCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccH---
Q 006627 167 DIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSW--- 243 (638)
Q Consensus 167 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 243 (638)
..+. +...+..+...+.+.|-...|.++...-+. ..+-
T Consensus 198 ----------------------------------~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~ 238 (822)
T PRK14574 198 ----------------------------------LAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHY 238 (822)
T ss_pred ----------------------------------hCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHH
Confidence 3332 444555555555555555555555544331 1000
Q ss_pred --------HHHHHHH-----HhCCC---hHHHHHHHHHHHHc-CccCChH-----hHHHHHHHhcccCChhhHHHHHHHH
Q 006627 244 --------TVMISGY-----IRCNE---INEGVRLFAEMIEE-NVFPSEI-----TILSLIIECGFVGGLQLGKWLHAYI 301 (638)
Q Consensus 244 --------~~li~~~-----~~~g~---~~~a~~~~~~m~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~ 301 (638)
..+++.- ....+ .+.|+.-++.+... +..|... ...-.+.++...|+...+.+.++.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0000000 01112 34455555555442 1223221 1223445566677777777777777
Q ss_pred HHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC---------chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 006627 302 LRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKD---------VMIWNAVISAYAQAHCIDKAFELFIHMKVSKV 372 (638)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 372 (638)
...+.+....+-..+.++|...+++++|..+|.++...+ ......|.-++...+++++|..+++.+...-.
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 777766555666777777777777777777777664321 11235566677777777777777777765210
Q ss_pred -----------CCCh--h-hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006627 373 -----------RPNE--V-TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI 438 (638)
Q Consensus 373 -----------~p~~--~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (638)
.|++ . .+..+...+...|+..+|++.++.+.... |-|..+...+.+.+...|.+.+|+..++...
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1111 1 11223344445555555555555554443 4455555555555555555555555554332
Q ss_pred --CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627 439 --YR-DICMWNAMMAGYGMHGCGEEALIFFVDMER 470 (638)
Q Consensus 439 --~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 470 (638)
.| +..+....+.++...+++.+|..+.+.+.+
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 12 223333444444444555555555444444
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1.3e-13 Score=138.12 Aligned_cols=587 Identities=12% Similarity=-0.005 Sum_probs=377.6
Q ss_pred hhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHH
Q 006627 19 HIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLG 90 (638)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 90 (638)
.+.-.|++++|.+++.++ .+|..|-..|-..|+.+++...+-...... +-|...|..+.......|.+.+|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 333449999999999998 899999999999999999998777665543 55667898888888999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCc--------chHHHHHHHHHhCCCchHHHHHHHH
Q 006627 91 KEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDV--------VSWSTMIRGYHRGGLPEEALEVMRE 162 (638)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~ 162 (638)
.-.+.+.++.. |++....-.-+..|.+.|+...|..-|.++.+.++ ..--.++..+...++-+.|++.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999987 67777777778889999999999988887765222 1222345667777777999998888
Q ss_pred hHHCC-CcCCHhhHHHHHHHhcccCchHHHHHHHHHHHH-------------------------hccCCCCchhH-HHHH
Q 006627 163 MRFMD-IRPSEVAMISMVSLFADVADVDLGKAIHACVVR-------------------------NCKDEKLGVAI-ATAL 215 (638)
Q Consensus 163 m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------~~~~~~~~~~~-~~~l 215 (638)
....+ -.-+..+++.+...+.....++.+......... .+.+..++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 77632 223444566666666666666666555544443 11111112233 2222
Q ss_pred HHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCCh
Q 006627 216 IDMYSKCGNLAYAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGL 291 (638)
Q Consensus 216 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 291 (638)
.-...+.+...+++..|-.... .++..|..+..++...|++.+|+++|..+.....--+...|..+.+++-..|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 2233344444444443332222 345678888999999999999999999998875555667888888899999999
Q ss_pred hhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch------------hHHHHHHHHHhcCCHHH
Q 006627 292 QLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVM------------IWNAVISAYAQAHCIDK 359 (638)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~ 359 (638)
+.|.+.|+..+... +.+..+-..|...+.+.|+.++|.+.+..+..+|.. ........+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999988764 455666778888899999999999999998766521 12233445667777666
Q ss_pred HHHHHHHHHHcC-----c-----------------CCChhhHHHHHHHHhccCchHHHHHHHH------HHHHhCCCCcc
Q 006627 360 AFELFIHMKVSK-----V-----------------RPNEVTMVGLLSLCTEAGALEMGKWLHT------YIEKQGLEVDV 411 (638)
Q Consensus 360 a~~~~~~m~~~g-----~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~ 411 (638)
=+.+...|.... + +-...+...++.+-.+.++.....+-.. .....++..+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 544444443221 1 1111222233333333333222222111 11122333222
Q ss_pred --cHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----Cc----hhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CCcH
Q 006627 412 --ILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DI----CMWNAMMAGYGMHGCGEEALIFFVDMERS-GV--KPNG 477 (638)
Q Consensus 412 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~--~p~~ 477 (638)
..+.-++..+++.+++++|+.+...+... +. ..-...+.+.+..+++..|...++.|... +. .|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34566777888999999999988766532 22 23345566777889999999999998865 11 2222
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHH-HH
Q 006627 478 -ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALL-AA 554 (638)
Q Consensus 478 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~ 554 (638)
..|+...+...+.++-.--.+++..+... .-.-++.........+..++.+..|+..+-++ ...|+.+..+..+ -+
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~-~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVK-NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 23443444444444333333333333221 11111222223344556778888888876655 4455533333222 22
Q ss_pred Hh----------hcCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 555 SK----------LHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 555 ~~----------~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+. ++-..-++..++++..++.-. ...+...+|.+|-..|=..-|.++|++..+-.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 21 122356778888888776554 56789999999999999999999999987543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=8.9e-13 Score=127.14 Aligned_cols=506 Identities=12% Similarity=0.026 Sum_probs=382.1
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 006627 86 MTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRF 165 (638)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (638)
+...=.+++...+++ +|.++..|...+. ..+.+.|.-++....+--+ +-.-|.-+|.+...++.|..+++..++
T Consensus 361 ~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445566666655 3556666655443 3455667777766554111 112234456777788889999998887
Q ss_pred CCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHH----HhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC----
Q 006627 166 MDIRPSEVAMISMVSLFADVADVDLGKAIHACVV----RNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---- 237 (638)
Q Consensus 166 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 237 (638)
. ++-+...|.+....--..|+.+....+.+.-+ ..|... +...|..=...+-..|..--+..+...+..
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i--~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI--NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc
Confidence 5 66777788777777778888888777776543 345555 556666666666666666665555554432
Q ss_pred -C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHH
Q 006627 238 -N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANA 315 (638)
Q Consensus 238 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (638)
. --.+|+.-...|.+.+.++-|..+|....+- .+-+...|......--..|..+....+++...... +-....+..
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM 589 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLM 589 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHH
Confidence 1 2257888888888899999999999888774 23345556666666666788888888888888764 344556667
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627 316 LVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392 (638)
Q Consensus 316 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (638)
....+-..|+...|..++...-+. +...|-.-+.......+++.|..+|.+... ..|+...|.--+..---.++.
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhH
Confidence 777778889999999998876643 456777788888899999999999998765 467777777666666667899
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006627 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDME 469 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 469 (638)
++|.+++++..+. ++.-...|..+.+.+.+.++++.|.+.|....+. .+..|-.|...--+.|+...|..++++.+
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 9999999888875 3555678888889999999999999999877633 56678888888888899999999999988
Q ss_pred HcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHH
Q 006627 470 RSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG 549 (638)
Q Consensus 470 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 549 (638)
-.+ +-|...|...++.-.+.|+.+.|..+..++.+ ..+.+...|..-|....+.++...+...+++... |+....
T Consensus 747 lkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVll 821 (913)
T KOG0495|consen 747 LKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLL 821 (913)
T ss_pred hcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHH
Confidence 775 55778899999999999999999999999987 6677778888888888888888888888887643 455666
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.+...+.....++.|+..|+++++.+|++..+|..+-..+...|.-++-.+++.+.....+
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 6777788888999999999999999999999999999999999999999999987755433
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.2e-13 Score=138.21 Aligned_cols=594 Identities=10% Similarity=0.018 Sum_probs=407.2
Q ss_pred cccCCcchHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccH
Q 006627 3 IKNGFLNLEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTI 74 (638)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 74 (638)
||..+.+..-|..|...|-.+|+.++|...+-.+ .-|..+-....+.|++..|.-.|.+.++.. |++...+
T Consensus 166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~ 244 (895)
T KOG2076|consen 166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELI 244 (895)
T ss_pred HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHH
Confidence 5667668899999999999999999999987766 788888889999999999999999999986 5666666
Q ss_pred HHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHH----HHHHHhhhcCCChhHHHHHhccCCC-----CCcchHHHHHH
Q 006627 75 PTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVS----NALIQMYSECGSLVSARYLFDEMPN-----RDVVSWSTMIR 145 (638)
Q Consensus 75 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~ 145 (638)
-.-...|-+.|+...|...|.++.....+.|..-. -..++.+...++-+.|.+.++.... -+...++.++.
T Consensus 245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae 324 (895)
T KOG2076|consen 245 YERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAE 324 (895)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 66677889999999999999999988643333333 2345667777878889888877654 35567899999
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCcCCHhhH--------------------------HHHHHHhcccCchHHHHHHHHHHH
Q 006627 146 GYHRGGLPEEALEVMREMRFMDIRPSEVAM--------------------------ISMVSLFADVADVDLGKAIHACVV 199 (638)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--------------------------~~ll~~~~~~~~~~~a~~~~~~~~ 199 (638)
.+.+...++.+......+......+|...+ ..+.-++.+....+....+.....
T Consensus 325 l~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~ 404 (895)
T KOG2076|consen 325 LFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV 404 (895)
T ss_pred HHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH
Confidence 999999999999999888762222222211 133445567777777788888888
Q ss_pred HhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627 200 RNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275 (638)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 275 (638)
.....+.-++..+.-+..++...|++.+|.++|..+.. .+...|-.+..+|...|..++|.+.|+..... .|+.
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~ 482 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDN 482 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCc
Confidence 77755544788999999999999999999999999875 45678999999999999999999999999874 4543
Q ss_pred -HhHHHHHHHhcccCChhhHHHHHHHHH--------HhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-------
Q 006627 276 -ITILSLIIECGFVGGLQLGKWLHAYIL--------RNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK------- 339 (638)
Q Consensus 276 -~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 339 (638)
..-.+|-..+-+.|+.++|.+.+..+. ..+..|+..+.......+...|+.++=..+-..|..+
T Consensus 483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~ 562 (895)
T KOG2076|consen 483 LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYI 562 (895)
T ss_pred hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666778999999999998843 3345666777777778888888887755443333211
Q ss_pred -------------------CchhHHHHHHHHHhcCCHHHHHHH------HHHHHHcCcCCCh--hhHHHHHHHHhccCch
Q 006627 340 -------------------DVMIWNAVISAYAQAHCIDKAFEL------FIHMKVSKVRPNE--VTMVGLLSLCTEAGAL 392 (638)
Q Consensus 340 -------------------~~~~~~~li~~~~~~~~~~~a~~~------~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~ 392 (638)
+.......+.+-.+.++.....+- +..-...|+..+. ..+.-++.++++.+++
T Consensus 563 f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~ 642 (895)
T KOG2076|consen 563 FPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRV 642 (895)
T ss_pred cchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhH
Confidence 111222233333333332211111 1111122222222 2345567788999999
Q ss_pred HHHHHHHHHHHHhCC--CCcc---cHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----Cc---hhHHHHHHHHHhcCChH
Q 006627 393 EMGKWLHTYIEKQGL--EVDV---ILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DI---CMWNAMMAGYGMHGCGE 459 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~~~ 459 (638)
++|..+...+..... .++. ..-...+.+....+++..|...++.+... ++ ..||..++.+.+.++-.
T Consensus 643 qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v 722 (895)
T KOG2076|consen 643 QEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRV 722 (895)
T ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776432 1111 23344566677889999999999887744 33 46665555555555443
Q ss_pred HHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHH-HHHHHH----------hc
Q 006627 460 EALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGC-MVDLLG----------RA 526 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~----------~~ 526 (638)
--...+...... +|+. ..+..........+.+..|+..+-++.. ..|+....+. ++-++. |.
T Consensus 723 ~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh 797 (895)
T KOG2076|consen 723 CYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRH 797 (895)
T ss_pred HHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333444333322 3333 2222223334567888999988877764 3455434332 222221 11
Q ss_pred CChHHHHHHHHhC-C-CCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc------------chHHHHHHHHH
Q 006627 527 GLLDEAHEMIKSM-P-LRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY------------GYNVLMSNIYA 590 (638)
Q Consensus 527 g~~~~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~~l~~~~~ 590 (638)
-..-++..++.+. . -.+ ...++..++.+|...|=.--|...|+++++..|.+. .+-..|.-+|.
T Consensus 798 ~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~ 877 (895)
T KOG2076|consen 798 AQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYK 877 (895)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhc
Confidence 1233455555444 1 122 467788899999999999999999999999876421 22345667899
Q ss_pred hcCCHHHHHHHHHH
Q 006627 591 VANRWNDVAGVRRV 604 (638)
Q Consensus 591 ~~g~~~~A~~~~~~ 604 (638)
..|+...|.+++++
T Consensus 878 ~SGn~~lArqil~k 891 (895)
T KOG2076|consen 878 KSGNMQLARQILEK 891 (895)
T ss_pred cCCcHHHHHHHHHh
Confidence 99999999998874
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=8e-13 Score=127.44 Aligned_cols=536 Identities=10% Similarity=0.027 Sum_probs=384.4
Q ss_pred CchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhc
Q 006627 51 KPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFD 130 (638)
Q Consensus 51 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 130 (638)
+..+|.-++...++.+ |-++..|-+-.+.--..|.+..|..+...--+.- +.+..+|.--+ +....+.|..+..
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHHHH
Confidence 4555666666666554 3344445444444444555555555544443332 33444443332 2233444544444
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchh
Q 006627 131 EMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVA 210 (638)
Q Consensus 131 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 210 (638)
......+.+-..-+.+---..+...=..++++..+. .|+.+. |=.+.....+.+.|+.++...++..+..
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAveccp~s----- 409 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECCPQS----- 409 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhccch-----
Confidence 333322222111122222222333344566666553 344432 2244445566667888888888887764
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHH----HHHcCccCChHhHHHHHH
Q 006627 211 IATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAE----MIEENVFPSEITILSLII 283 (638)
Q Consensus 211 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~ 283 (638)
.-|.-++.+..-++.|..+++...+ .+...|.+-...--.+|+.+...++++. +...|+..+...|..=..
T Consensus 410 --~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 410 --MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 3445556667778889888877665 5666777666666678999988888765 456799999999998889
Q ss_pred HhcccCChhhHHHHHHHHHHhcCCCc--hhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHH
Q 006627 284 ECGFVGGLQLGKWLHAYILRNGFEFS--LAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCID 358 (638)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 358 (638)
.|...|..-.+..+....+..|+.-. ..++..-...|.+.+.++-|..+|....+- +...|...+..--..|..+
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 99999999999999999998887543 467888889999999999999999887643 5567777777667788899
Q ss_pred HHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006627 359 KAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI 438 (638)
Q Consensus 359 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (638)
....+|++.... ++-....+.......-..|++..|..++..+.+.. +.+..++-+-+........++.|..+|.+..
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999998765 23344455555566667899999999999999887 6688899999999999999999999998765
Q ss_pred --CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627 439 --YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515 (638)
Q Consensus 439 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 515 (638)
.+....|.--+....-.++.++|.+++++.++. -|+- ..|..+.+.+.+.++.+.|.+.|..-.+ ..+-.+..
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipL 721 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPL 721 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchH
Confidence 567778877777777789999999999998876 5666 5788888899999999999999987765 45556677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----------------
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ---------------- 577 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------------- 577 (638)
|-.|...=.+.|.+-.|..++++. ..+-+...|...+..-.+.|+.++|.....++++--|.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 777888888899999999999998 33346889999999999999999999999888775443
Q ss_pred --------------CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 578 --------------NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 578 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
|+.+....+..++...++++|++.|.+..+.++
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 456666778888899999999999987755443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.5e-15 Score=139.54 Aligned_cols=475 Identities=10% Similarity=0.032 Sum_probs=295.0
Q ss_pred HHHHHcccCchHHHHHHHHHHHhCCCCChhHH-HHHHHhhhcCCChhHHHHHhccCCC--CC------cchHHHHHHHHH
Q 006627 78 LKACAQVLMTHLGKEIHGFAIKNGLDGDAYVS-NALIQMYSECGSLVSARYLFDEMPN--RD------VVSWSTMIRGYH 148 (638)
Q Consensus 78 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~~~ 148 (638)
.+-|.....+.+|...++.+.+...-|+.-.. -.+-..+.+...+..|++.++.... |+ +...+.+...+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 34455556677777777777776655554433 2344566677777777777654432 21 123333444566
Q ss_pred hCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHH
Q 006627 149 RGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYA 228 (638)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 228 (638)
+.|+++.|+..|+...+. .|+..+-..++-++...|+.++.++.|..++.....+ |..- |.
T Consensus 288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~--dddk-------yi-------- 348 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEI--DDDK-------YI-------- 348 (840)
T ss_pred ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCC--Cccc-------cc--------
Confidence 778888888888776663 5777766666666667777777777777776654333 1110 00
Q ss_pred HHHHhccCCCCcccH-----HHHHHHHHhCC--ChHHHHHHHHHHHHcCccCChHh-HHHHHHHhcccCChhhHHHHHHH
Q 006627 229 KQLFNRLNQNSVVSW-----TVMISGYIRCN--EINEGVRLFAEMIEENVFPSEIT-ILSLIIECGFVGGLQLGKWLHAY 300 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~-----~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~ 300 (638)
..-..|+.... +..++-+-+.+ +.++++-.-.++..--+.||-.. |...+...-.....+.|.
T Consensus 349 ----~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~----- 419 (840)
T KOG2003|consen 349 ----KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI----- 419 (840)
T ss_pred ----CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh-----
Confidence 00001111111 11111111111 11122211122222222333211 111111111111111111
Q ss_pred HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHH----HH-HHHHh-cCCHHHHHHHHHHHHHcCcCC
Q 006627 301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNA----VI-SAYAQ-AHCIDKAFELFIHMKVSKVRP 374 (638)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----li-~~~~~-~~~~~~a~~~~~~m~~~g~~p 374 (638)
..-..-...+.+.|+++.|.+++.-..+.|..+-.+ |- --|.+ ..++..|.+.-+...... +-
T Consensus 420 ----------dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ry 488 (840)
T KOG2003|consen 420 ----------DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RY 488 (840)
T ss_pred ----------hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-cc
Confidence 111122335678899999998888777665443222 21 12222 234566655554433221 11
Q ss_pred ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCchhHHHHHHH
Q 006627 375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA---IYRDICMWNAMMAG 451 (638)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~ 451 (638)
+....+.--+.....|+++.|.+.+++.....-......|+ +.-.+...|++++|++.|-++ ...+....-.+...
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22222222233445789999999999998766444444443 344567789999999998654 35677777788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627 452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE 531 (638)
Q Consensus 452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 531 (638)
|-...+..+|++++-+.... ++.|+.....|...|-+.|+-..|.+.+-+--+ -++-+.++..-|..-|....-+++
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHH
Confidence 98899999999999776654 455678899999999999999999998777654 567788999989999999999999
Q ss_pred HHHHHHhC-CCCCCHhhHHHHHHHHh-hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627 532 AHEMIKSM-PLRPNMIVWGALLAASK-LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW 595 (638)
Q Consensus 532 A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 595 (638)
|+.+|+++ -++|+..-|..++..|. +.|++..|...|+......|++...+-.|..+....|-.
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999998 58899999998887775 579999999999999999999999999999998888743
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.1e-14 Score=131.28 Aligned_cols=310 Identities=14% Similarity=0.146 Sum_probs=231.3
Q ss_pred chHhhhhHHHhhhhcCChhHHHHhhhhh---------hc---HHHHHHHHHhCCCchhHHHHHHHHHHCC----------
Q 006627 9 NLEQTRQCHAHIIKTHFKFSYTNIINPL---------TR---YNSLVTSYIKNNKPSSALNIYAFMRKNG---------- 66 (638)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------- 66 (638)
.+++-|.|+++- .+|.++++.-+++.| .. .-.|+..|-.++-+-.-++.|-.|...|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 566778888765 778999999999888 11 1222222222222222233333332221
Q ss_pred ---------CCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC----
Q 006627 67 ---------SEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP---- 133 (638)
Q Consensus 67 ---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---- 133 (638)
.+....|+..+|.++++-...+.|.+++++......+.+..++|.+|.+-.-..+ .+++.+|.
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 2456679999999999999999999999998877778999999999987654444 44555554
Q ss_pred CCCcchHHHHHHHHHhCCCchH----HHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchH-HHHHHHHHHHHh------c
Q 006627 134 NRDVVSWSTMIRGYHRGGLPEE----ALEVMREMRFMDIRPSEVAMISMVSLFADVADVD-LGKAIHACVVRN------C 202 (638)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~------~ 202 (638)
.||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|..+++.++.. .+..++..+... .
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 4999999999999999998764 5678899999999999999999999999988874 355555555432 1
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC--------CC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCc
Q 006627 203 KDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ--------NS---VVSWTVMISGYIRCNEINEGVRLFAEMIEENV 271 (638)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 271 (638)
+..+.+...+...+..|....+.+-|.++-.-... ++ ..-|..+....++....+....+|+.|..+-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 22233556778888888899999999887765543 11 23466778888889999999999999999989
Q ss_pred cCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhc
Q 006627 272 FPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKC 323 (638)
Q Consensus 272 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (638)
.|+..+...++++....|.++-.-+++.++...|.........-++..+++.
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988666655555555555443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4.5e-14 Score=129.98 Aligned_cols=437 Identities=10% Similarity=0.049 Sum_probs=287.1
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHH-HHHHhcccCchHHHHHHHHHHHHhccCCCCchh----HHHHHHH
Q 006627 143 MIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMIS-MVSLFADVADVDLGKAIHACVVRNCKDEKLGVA----IATALID 217 (638)
Q Consensus 143 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~l~~ 217 (638)
|..-|..+....+|+..|+-..+....|+....-. +-..+.+.+++.+|...+...++.-+.. +.. +.+.+.-
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi--nk~~rikil~nigv 284 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI--NKDMRIKILNNIGV 284 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc--chhhHHHHHhhcCe
Confidence 34555666677888988888888777777554322 2234456667778888888777766555 332 3344444
Q ss_pred HHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhH--------HHHHHHhcc
Q 006627 218 MYSKCGNLAYAKQLFNRLNQ--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI--------LSLIIECGF 287 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~ll~~~~~ 287 (638)
.+.+.|+++.|...|+...+ |+..+--.|+-++..-|+-++..+.|.+|..--..||..-| ..++.-..+
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 56677888888888877664 66554444455555677778888888888765444444433 011111000
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHH----HHHhcCCCCCch-------------hH------
Q 006627 288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSAR----TLFDGMKSKDVM-------------IW------ 344 (638)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----~~~~~~~~~~~~-------------~~------ 344 (638)
. ..++.|.+.+ ..+.++++ ++..-+..++.. .+
T Consensus 365 n-------d~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 365 N-------DHLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID 420 (840)
T ss_pred h-------HHHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh
Confidence 0 0111111111 00111111 111111122110 01
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHH--HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 006627 345 --NAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVG--LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDM 420 (638)
Q Consensus 345 --~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (638)
-.-...+.+.|+++.|+++++-+....-+.-...-+. .+..+....++..|.++-+...... .-+....+.-...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCce
Confidence 1112357889999999999998876543322222222 2222223446777777777665543 2333333333333
Q ss_pred HHhcCCHHHHHHHHHcCCCCCchhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 006627 421 YAKCGDVNGAYRLFSEAIYRDICMWNAMMA---GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGK 497 (638)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 497 (638)
....|++++|.+.|++....|...-.+|.. .+-..|+.++|++.|-++..- +..+......+...|....+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 455799999999999999888765555543 456789999999999887653 2456678888889999999999999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 498 SVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
+++..... -++.|+.+...|...|-+.|+..+|.+..-+. . ++.+..+...|...|....=.++|+..|+++.-+.
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99998875 56678899999999999999999999976444 4 34467777777777777777899999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
|+...+...++.++.+.|+|.+|.++++....+-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 9988888899999999999999999999887543
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.9e-13 Score=127.31 Aligned_cols=212 Identities=15% Similarity=0.084 Sum_probs=167.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHH
Q 006627 388 EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIF 464 (638)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 464 (638)
-.|+.-.+..-++..++.. +-+...|-.+..+|....+.++-...|++.. ..|+.+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3577777888888887765 3333336677777888888888888887765 34677888777778888899999999
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 006627 465 FVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR 542 (638)
Q Consensus 465 ~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 542 (638)
|++.+.. .| +...|..+.-+.-+.+.++++...|++.++ .++.-++.|+.....+..++++++|.+.++.. .+.
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9998865 44 345666666666788899999999999998 56666788888999999999999999999887 344
Q ss_pred CC---------HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 543 PN---------MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 543 p~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
|. +.....++.... .+++..|+.+++++++++|....+|..|+.+..+.|+.++|+++|++-
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 43 223333333333 389999999999999999999999999999999999999999999875
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=6.1e-13 Score=132.62 Aligned_cols=534 Identities=10% Similarity=-0.025 Sum_probs=286.2
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCC
Q 006627 57 NIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRD 136 (638)
Q Consensus 57 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 136 (638)
.++-.+...|+.|+..||..++..|+..|+.+.|- +|..|.-.+.+.+..+++.++....+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778889999999999999999999999999999 9999998888889999999999999999887765 688
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhH-------HCCCcCCHhhHHHHHHHhc--------------ccCchHHHHHHH
Q 006627 137 VVSWSTMIRGYHRGGLPEEALEVMREMR-------FMDIRPSEVAMISMVSLFA--------------DVADVDLGKAIH 195 (638)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~p~~~t~~~ll~~~~--------------~~~~~~~a~~~~ 195 (638)
..+|..|..+|.+.||...-..+=+.|. ..|+.....-+-..+.++- ..|.++.+.+++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999765222222122 1222211112212222221 122222222222
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHh-cCChHHHHHHHhccCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccC
Q 006627 196 ACVVRNCKDEKLGVAIATALIDMYSK-CGNLAYAKQLFNRLNQ-NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFP 273 (638)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 273 (638)
..+....... +... +++-... ...+++-........+ ++..+|..++++-..+|+.+.|..++.+|+++|++.
T Consensus 163 ~~~Pvsa~~~---p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 163 AKVPVSAWNA---PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hhCCcccccc---hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 2221111111 1111 1222222 2233444444444444 888999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 006627 274 SEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQ 353 (638)
Q Consensus 274 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 353 (638)
+.+-|..++-+ .++...+..+++.|.+.|+.|+..|+.-.+-.+..+|....+.+..+.-.--....+..+.++...
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 99988888876 888999999999999999999999998887777776653332222111110111222233222111
Q ss_pred cCCH-----HHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCC---CCcccHHHHHHHHHHhcC
Q 006627 354 AHCI-----DKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGL---EVDVILKTALVDMYAKCG 425 (638)
Q Consensus 354 ~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 425 (638)
..+. .-....+.+..-.|+......|..... ....|.-+..+++...+..-.. +.++..|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 1111 112222222222333333333332222 2235666666666665543211 122333444444333321
Q ss_pred CHHHHHHHHH--cCCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-------cHHHHHHHHHHHhcc
Q 006627 426 DVNGAYRLFS--EAIYR--DICMWNAMMAGYGMHGCGEEALIFFVDMER----SGVKP-------NGITFIGLLNACSHA 490 (638)
Q Consensus 426 ~~~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p-------~~~~~~~l~~~~~~~ 490 (638)
+-.-....+. ..... +...-..+.....+. +...+++-+..+.. .-..| -...-+.++..|++.
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 1100000000 00000 000000000000000 11111111111100 00011 011223333444444
Q ss_pred CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHhhHHHHHHHHhhcCChHHHH
Q 006627 491 GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP-----LRPNMIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~A~ 565 (638)
-+..++...-++.... -+ | ..|..|++.+....+.+.|..+.++.. ..-+..-+..+.....+.+....+.
T Consensus 473 ~n~lK~l~~~ekye~~-lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDL-LF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHH-Hh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 4444444333333221 11 1 456666666666677777777666652 1223334445555556666666666
Q ss_pred HHHHHHhc---cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627 566 IAATQILE---IEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK 612 (638)
Q Consensus 566 ~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 612 (638)
.++++..+ ..|.-+.....+.+.....|+.+.-.+.++-+...|+.-
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 66666554 223333445555566666677777666666666665544
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.5e-16 Score=150.74 Aligned_cols=255 Identities=16% Similarity=0.103 Sum_probs=111.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGD 426 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 426 (638)
...+.+.|++++|++++++......+|+...|- .+...+...++.+.|...++.+...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 455566777777777775443332233333333 33345555677777777777777655 3355566666666 67788
Q ss_pred HHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627 427 VNGAYRLFSEAI--YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNGITFIGLLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 427 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 503 (638)
+++|.+++.... .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887776653 3456667777788888889999999988877532 2456677888888999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch
Q 006627 504 VHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY 581 (638)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 581 (638)
.+. .+.+......++..+...|+.+++.++++.. ..+.++..|..+..++...|++++|...++++.+.+|+|+.+
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 863 3335778888999999999999988888776 124466778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 582 NVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
...++.++...|+.++|.++++++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999988764
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=7.3e-12 Score=125.10 Aligned_cols=584 Identities=12% Similarity=0.039 Sum_probs=317.5
Q ss_pred CCc-chHhhhhHHHhhhhcCChhHHHHhhhhh---------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHH
Q 006627 6 GFL-NLEQTRQCHAHIIKTHFKFSYTNIINPL---------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIP 75 (638)
Q Consensus 6 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 75 (638)
|.. |-.+|..||.-|+..|+++.|- +|.-| ..++.++.++.+.++.+.+. .|.+.||.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 444 8899999999999999999999 88777 77888888888888877776 68888999
Q ss_pred HHHHHHHcccCchHHHHHHHHHH-------HhCCC-CChhH-------------HHHHHHhhhcCCChhHHHHHhccCC-
Q 006627 76 TILKACAQVLMTHLGKEIHGFAI-------KNGLD-GDAYV-------------SNALIQMYSECGSLVSARYLFDEMP- 133 (638)
Q Consensus 76 ~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~-~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~~~- 133 (638)
.|+.+|...||......+-+.+. .+|+. |.... -...+....-.|-++.+++++..++
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999988765332222122 22211 10000 0111222222233444444442222
Q ss_pred ---------------------------------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHH
Q 006627 134 ---------------------------------NRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVS 180 (638)
Q Consensus 134 ---------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 180 (638)
.++..+|..++.+-..+|+.+.|..++.+|++.|++.+..-|-.++-
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 15677888888888888888888888888888888888776666665
Q ss_pred HhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChH---
Q 006627 181 LFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEIN--- 257 (638)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~--- 257 (638)
+ .++...+..++..|...|..+ +..++.--+..+.+.|....+....+.-..-....+..+.++.....+.+
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl 322 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNL 322 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHH
Confidence 5 777778888888888888877 77777666655555444222221111000000011111111100000000
Q ss_pred --HHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcC---CCchhhHHHHHHHHHh----------
Q 006627 258 --EGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGF---EFSLAMANALVDMYGK---------- 322 (638)
Q Consensus 258 --~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~---------- 322 (638)
-....+.+..-.|+.....+|...... ...|.-+.+.++-..+..-.. ..++..+..++.-|.+
T Consensus 323 ~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i 401 (1088)
T KOG4318|consen 323 RKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRI 401 (1088)
T ss_pred HHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 001111111111222122222221111 112333333333322221100 0011112111221111
Q ss_pred ------------cCChHHHHHHHhcCCCC-------------------C--------chhHHHHHHHHHhcCCHHHHHHH
Q 006627 323 ------------CREIRSARTLFDGMKSK-------------------D--------VMIWNAVISAYAQAHCIDKAFEL 363 (638)
Q Consensus 323 ------------~~~~~~A~~~~~~~~~~-------------------~--------~~~~~~li~~~~~~~~~~~a~~~ 363 (638)
..+.....+......+. + ...-+.++..++..-+..+++..
T Consensus 402 ~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~ 481 (1088)
T KOG4318|consen 402 YYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCD 481 (1088)
T ss_pred HHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222111110 0 01223445555555555555544
Q ss_pred HHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-
Q 006627 364 FIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ--GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR- 440 (638)
Q Consensus 364 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 440 (638)
-+.....-+ | ..|..++.-++.....+.|..+.++.... .+..|..-+..+.+.+.+.+...++..++.++.+.
T Consensus 482 ~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a 558 (1088)
T KOG4318|consen 482 EEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSA 558 (1088)
T ss_pred HHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHh
Confidence 433332211 1 56788888888888888888888877543 23456677788888888888888888888776632
Q ss_pred -C----chhHHHHHHHHHhcCChHHHHHHHHHHHHcC------------------------------CCCcHHHHHHHHH
Q 006627 441 -D----ICMWNAMMAGYGMHGCGEEALIFFVDMERSG------------------------------VKPNGITFIGLLN 485 (638)
Q Consensus 441 -~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~------------------------------~~p~~~~~~~l~~ 485 (638)
+ ..++-.++......|+.+...++.+-+...| .+|.+.....+.+
T Consensus 559 ~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcr 638 (1088)
T KOG4318|consen 559 ENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCR 638 (1088)
T ss_pred hCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHH
Confidence 1 1222333444444555554444444433322 2333322222222
Q ss_pred H---------------------HhccCcHHHHHHHHHHHhhhcCC---------------CC---------ChhHHHHHH
Q 006627 486 A---------------------CSHAGLVTEGKSVFDKMVHGLGL---------------VP---------KIEHYGCMV 520 (638)
Q Consensus 486 ~---------------------~~~~~~~~~a~~~~~~~~~~~~~---------------~p---------~~~~~~~l~ 520 (638)
. |.+.|++.+|.++.+- .|+ .| +......|+
T Consensus 639 lv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et----pG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL 714 (1088)
T KOG4318|consen 639 LVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET----PGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLL 714 (1088)
T ss_pred HHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc----CcccccCCCccccccCccccHHHHHHHHhHhHHHHHHH
Confidence 2 2233333333332221 011 00 011233467
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCC
Q 006627 521 DLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHK---NPSMGEIAATQILEIEPQ---NYGYNVLMSNIYAVANR 594 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 594 (638)
..|.+.|+++.|..++.+++..|+..+...+...+.+.. +..++....+++.+..|. ....+...+.+..+-..
T Consensus 715 ~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~q 794 (1088)
T KOG4318|consen 715 QSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQ 794 (1088)
T ss_pred HHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHH
Confidence 788999999999999999998888888888877765433 567777777777775554 44455666666667677
Q ss_pred HHHHHHHHHHHhhcCCcCCC
Q 006627 595 WNDVAGVRRVMKEIRVKKEP 614 (638)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~~ 614 (638)
.+.|.+.|.+..++.+..+.
T Consensus 795 kkaAkk~f~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 795 KKAAKKCFERLEEQLTVSTA 814 (1088)
T ss_pred HHHHHHHHHHHHHccCCCcH
Confidence 77899999999887655443
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=3.8e-10 Score=109.22 Aligned_cols=528 Identities=12% Similarity=0.125 Sum_probs=277.5
Q ss_pred hhHHHhhhhcCChhHHHHhhhhh----------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 006627 14 RQCHAHIIKTHFKFSYTNIINPL----------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQ 83 (638)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 83 (638)
-.-+..+.++|++..-+..|+.. +.|...+.-....+-++-++.+|++.++. ++..-..-+..+..
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 33445555666666666666654 56666666666666666666666666543 22224455555666
Q ss_pred ccCchHHHHHHHHHHHhC------CCCChhHHHHHHHhhhcCCC---hhHHHHHhccCCC--CC--cchHHHHHHHHHhC
Q 006627 84 VLMTHLGKEIHGFAIKNG------LDGDAYVSNALIQMYSECGS---LVSARYLFDEMPN--RD--VVSWSTMIRGYHRG 150 (638)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~ 150 (638)
.+++++|.+.+....... -+.+-..|..+.....+.-+ --....+++.+.. +| ...|+.|...|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 666666666665553211 13344455555544443321 1122233333332 22 23577777777777
Q ss_pred CCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006627 151 GLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQ 230 (638)
Q Consensus 151 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 230 (638)
|.+++|.++|++..+. ..+..-|..+.++|+...+...+..+- .....+.... ..-+++....
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e--------------d~~dl~~~~a 324 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE--------------DDVDLELHMA 324 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh--------------hhhhHHHHHH
Confidence 7777777777776653 334455566666655433222221111 0000111110 0011222223
Q ss_pred HHhccCCC---------------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHH
Q 006627 231 LFNRLNQN---------------SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGK 295 (638)
Q Consensus 231 ~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 295 (638)
-|+.+... ++..|..-+. +..|+..+-...|.+.... +.|-..
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka------------------- 382 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA------------------- 382 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC-------------------
Confidence 33332221 1112222111 1234444444444444332 111110
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch-------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006627 296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVM-------IWNAVISAYAQAHCIDKAFELFIHMK 368 (638)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~ 368 (638)
.-.-...+..+.+.|-..|+++.|..+|++..+-+-. +|......-.+..+++.|++++++..
T Consensus 383 ----------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 383 ----------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred ----------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 0001124556666666777777777777766543222 33333444445566667777666553
Q ss_pred HcCc-----------------CCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 006627 369 VSKV-----------------RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAY 431 (638)
Q Consensus 369 ~~g~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 431 (638)
..-- .-+...|...++.-...|-++....+++.+.+..+ .++.+.....-.+....-++++.
T Consensus 453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHH
Confidence 2211 11223344455555566788888888998888764 33333333334455666789999
Q ss_pred HHHHcCC----CCCc-hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH--HhccCcHHHHHHHHH
Q 006627 432 RLFSEAI----YRDI-CMWNAMMAGYGM---HGCGEEALIFFVDMERSGVKPNGITFIGLLNA--CSHAGLVTEGKSVFD 501 (638)
Q Consensus 432 ~~~~~~~----~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 501 (638)
++|++.+ -|++ ..|+..+.-+.+ ....+.|..+|++.++ |++|...-+..|+.+ -.+-|....|+.+++
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiye 610 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYE 610 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999866 3343 467776665544 2378999999999998 777766433333332 235688889999999
Q ss_pred HHhhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHH---HHHHHHhhcCChHHHHHHHHHHhcc-
Q 006627 502 KMVHGLGLVPKI--EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWG---ALLAASKLHKNPSMGEIAATQILEI- 574 (638)
Q Consensus 502 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~- 574 (638)
++.. ++++.. .+|+..|.-....=-......+++++ ..-|+...-. .....-.+.|..+.|+.++...-++
T Consensus 611 rat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 611 RATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 9876 555543 56776665333222233334444443 2234433322 2223345678888888888877774
Q ss_pred CCC-CcchHHHHHHHHHhcCCHHHH
Q 006627 575 EPQ-NYGYNVLMSNIYAVANRWNDV 598 (638)
Q Consensus 575 ~p~-~~~~~~~l~~~~~~~g~~~~A 598 (638)
+|. +...|...-.--.+.|+-+--
T Consensus 689 dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 689 DPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred CCcCChHHHHHHHHHHHhcCCHHHH
Confidence 443 556677777777777774433
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=9.5e-11 Score=109.18 Aligned_cols=458 Identities=11% Similarity=0.047 Sum_probs=229.8
Q ss_pred CChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHh-hHHHHH
Q 006627 104 GDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEV-AMISMV 179 (638)
Q Consensus 104 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll 179 (638)
.+...|-...+--...+++..|..+|+.... .+...|--.+..=.++..+..|..+++..... -|-.. .|---+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 3444455555555566778888888887665 55667777777778888888888888887763 34322 111111
Q ss_pred HHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHH
Q 006627 180 SLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEG 259 (638)
Q Consensus 180 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 259 (638)
-.=-..|++..|+++|....+-. |+...|++.|+.-.+...++.|
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~-----------------------------------P~eqaW~sfI~fElRykeiera 193 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWE-----------------------------------PDEQAWLSFIKFELRYKEIERA 193 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCC-----------------------------------CcHHHHHHHHHHHHHhhHHHHH
Confidence 11123344445555554444322 4444444444444444444444
Q ss_pred HHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHh-cC-CCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 006627 260 VRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRN-GF-EFSLAMANALVDMYGKCREIRSARTLFDGMK 337 (638)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 337 (638)
..+|+...- +.|+..+|....+--.+.|+...+.++|+...+. |- ..+...+.+...--.++..++.|.-+|.-..
T Consensus 194 R~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 194 RSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 2344444444444444444444444444443331 10 1112222333333333444444444443222
Q ss_pred ----CCC-chhHHHHHHHHHhcCCHH---HHHHH-----HHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHH
Q 006627 338 ----SKD-VMIWNAVISAYAQAHCID---KAFEL-----FIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEK 404 (638)
Q Consensus 338 ----~~~-~~~~~~li~~~~~~~~~~---~a~~~-----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 404 (638)
+.. ...|..+...--+-|+.. .++-- ++.+...+ +-|-.+|-..++.-...|+.+...++++....
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 110 111222221111222221 11111 11111111 22333444444444455555555555555554
Q ss_pred hCCCCcc-------cHHHHHHHH---HHhcCCHHHHHHHHHcCC---CCCchh----HHHHHHHHHhcCChHHHHHHHHH
Q 006627 405 QGLEVDV-------ILKTALVDM---YAKCGDVNGAYRLFSEAI---YRDICM----WNAMMAGYGMHGCGEEALIFFVD 467 (638)
Q Consensus 405 ~~~~~~~-------~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~ 467 (638)
.- ||-. .+|--+--+ -....+.+.+.++|+... .....| |.....-..++.+...|.+++..
T Consensus 351 nv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 351 NV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred cC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 32 3311 111111011 112345555555554433 112222 33333344456677777777766
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC---
Q 006627 468 MERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN--- 544 (638)
Q Consensus 468 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--- 544 (638)
.+ |.-|-..+|...|..-.+.++++.+..++++.++ --+-+..+|......=...|+.+.|..+|.-+-.+|.
T Consensus 430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 55 5567777777777777777777777777777764 2233556666666666677777777777776643442
Q ss_pred -HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhh
Q 006627 545 -MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA-----VAN-----------RWNDVAGVRRVMKE 607 (638)
Q Consensus 545 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 607 (638)
...|...+..-...|.++.|..+|+++++..+... +|...+.--. ..| ....|..+|++...
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 34455555555667777777777777777776643 5555554433 334 55666777766543
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4.4e-11 Score=111.36 Aligned_cols=397 Identities=10% Similarity=0.073 Sum_probs=293.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhccc
Q 006627 212 ATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFV 288 (638)
Q Consensus 212 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 288 (638)
|..-...-...+++..|.++|++... .++..|--.+.+-.++.....|..+++.....-...|... .-.+..--..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHh
Confidence 33333334456677788888888775 5566777778888888888889999888877533334333 3344445567
Q ss_pred CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 006627 289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK--SKDVMIWNAVISAYAQAHCIDKAFELFIH 366 (638)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 366 (638)
|++..|.++|+...+ ..|+...+.+.++.-.+-+.++.|.+++++.. .|++.+|--...--.+.|+...+..+|+.
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 899999999988765 47899999999999999999999999999854 67888888877777888999999999988
Q ss_pred HHHcCcCCChhhHHHHHHHH----hccCchHHHHHHHHHHHHhCCCCc--ccHHHHHHHHHHhcCCHHHHHHHH------
Q 006627 367 MKVSKVRPNEVTMVGLLSLC----TEAGALEMGKWLHTYIEKQGLEVD--VILKTALVDMYAKCGDVNGAYRLF------ 434 (638)
Q Consensus 367 m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~------ 434 (638)
..+. -.|...-..+..++ .+...++.|.-+++...+.= |.+ ...|......--+-|+........
T Consensus 233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 6553 12232222333333 35677888888888887753 333 344555444444556654444332
Q ss_pred --HcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHH-----HHH---hccCcHHHHHHH
Q 006627 435 --SEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI--TFIGLL-----NAC---SHAGLVTEGKSV 499 (638)
Q Consensus 435 --~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~-----~~~---~~~~~~~~a~~~ 499 (638)
+.+... |-.+|--.++.-...|+.+...++|++.+.. ++|-.. .|...| .+| ....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 223322 5567777888888889999999999999986 577331 222222 222 357889999999
Q ss_pred HHHHhhhcCCCCChhHHHHHH----HHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627 500 FDKMVHGLGLVPKIEHYGCMV----DLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEI 574 (638)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 574 (638)
++..++ -++....+|..+- ....++.++..|.+++-.+ +..|...++...+..-.+.++++....+|++.++.
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999986 4554555555443 4446889999999999887 88999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCee
Q 006627 575 EPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFS 617 (638)
Q Consensus 575 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 617 (638)
.|.+..+|.-.+..-...|+++.|..+|....++.....|.+-
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 9999999999999999999999999999999988877777553
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=2.7e-12 Score=127.30 Aligned_cols=275 Identities=8% Similarity=0.012 Sum_probs=189.6
Q ss_pred cCChHHHHHHHhcCCCC--CchhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH--HHHHHHhccCchHHHHH
Q 006627 323 CREIRSARTLFDGMKSK--DVMIWNAV-ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV--GLLSLCTEAGALEMGKW 397 (638)
Q Consensus 323 ~~~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 397 (638)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777776655432 22222222 33446777788888888777653 45543332 22456667788888888
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc---h--------hHHHHHHHHHhcCChHHHHHHHH
Q 006627 398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI---C--------MWNAMMAGYGMHGCGEEALIFFV 466 (638)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~A~~~~~ 466 (638)
.++.+.+.. |-++.....+...|.+.|++++|.+++..+.+... . .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888777765 56667777777788888888888877776663311 1 22333333334445566666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 006627 467 DMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-N 544 (638)
Q Consensus 467 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 544 (638)
.+-.. .+.++.....+...+...|+.++|.+.+++..+ .+|+.... ++.+....++.+++++.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65443 245677888888999999999999999988875 24454322 223334568999999998887 4455 4
Q ss_pred HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+..+..+...+...+++++|...|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667788899999999999999999999999985 5677899999999999999999986643
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.1e-13 Score=130.39 Aligned_cols=277 Identities=15% Similarity=0.038 Sum_probs=213.4
Q ss_pred ChHHHHHHHhcCCCC--Cc-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--cCCChhhHHHHHHHHhccCchHHHHH-H
Q 006627 325 EIRSARTLFDGMKSK--DV-MIWNAVISAYAQAHCIDKAFELFIHMKVSK--VRPNEVTMVGLLSLCTEAGALEMGKW-L 398 (638)
Q Consensus 325 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~-~ 398 (638)
+..+|...|..+++. |+ .....+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+ +-+.. +
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 467788888885532 33 344567788889999999999999887642 12245677777765432 12222 2
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006627 399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI---CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP 475 (638)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 475 (638)
-+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+-|+ .+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 33344443 67788999999999999999999999998875544 6777777778888899999999998773 345
Q ss_pred cH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHH
Q 006627 476 NG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALL 552 (638)
Q Consensus 476 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 552 (638)
.. ..|.-+...|.++++++.|+-.|+++.+ -.+.+..+...++..+.+.|+.++|+++++++ ...| |+..-..-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 44 5677788889999999999999999974 23345677888889999999999999999998 4444 555555566
Q ss_pred HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 553 AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
..+...+++++|.+.++++.++-|++..++.++|.+|.+.|+.+.|+.-|--+.+-.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6778889999999999999999999999999999999999999999999887755433
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=3.2e-12 Score=126.80 Aligned_cols=147 Identities=14% Similarity=0.068 Sum_probs=104.7
Q ss_pred hcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 006627 423 KCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSV 499 (638)
Q Consensus 423 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 499 (638)
...+.+...++++.+. ..++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHH
Confidence 3344455555555554 235666777777778888888888888877763 5555322 23333455888888888
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 500 FDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
.+...+ ..+-|...+..+...+.+.|++++|.+.|+.+ ...|+...+..+...+...|+.++|.+.+++.+.+-
T Consensus 317 ~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888876 34455566777888888888888888888887 667888887888888888888888888888887653
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-10 Score=108.58 Aligned_cols=254 Identities=10% Similarity=0.037 Sum_probs=190.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC---cccHHHHHHHHHHhcC
Q 006627 349 SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV---DVILKTALVDMYAKCG 425 (638)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 425 (638)
.++-...+.+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+.. |- |..+|+.++-.-..+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhH
Confidence 3444555677777777777777766555555555555556778888888888888763 22 4556665543322222
Q ss_pred CHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627 426 DVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMV 504 (638)
Q Consensus 426 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 504 (638)
++.---...-.+.+-.+.|..++.+-|.-.++.++|..+|++..+. .|.. ..|+.+..-|....+...|.+-++.++
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2211111112222334556666667777788899999999999876 4544 667788888999999999999999998
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchH
Q 006627 505 HGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYN 582 (638)
Q Consensus 505 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 582 (638)
+ -.+.|-..|..|+++|.-.+.+.-|+-+|+++ ..+| |+..|..|+..|.+.++.++|++.|.+++...-.+..++
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5 44557789999999999999999999999998 5666 689999999999999999999999999999887778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 583 VLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
..|+++|-+.++.++|..++++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=1.5e-11 Score=122.80 Aligned_cols=277 Identities=8% Similarity=-0.055 Sum_probs=161.2
Q ss_pred cCChHHHHHHHhcCCCC--Cc-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh--hHHHHHHHHhccCchHHHHH
Q 006627 323 CREIRSARTLFDGMKSK--DV-MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEV--TMVGLLSLCTEAGALEMGKW 397 (638)
Q Consensus 323 ~~~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~ 397 (638)
.|+++.|.+.+.+..+. ++ ..+-.......+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555544322 11 11222234445556666666666665432 23332 12223445555666666666
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 006627 398 LHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWN----AMMAGYGMHGCGEEALIFFVDMER 470 (638)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~A~~~~~~m~~ 470 (638)
.++.+.+.. |-++.+...+...+...|++++|.+.+....+. +...+. ....+....+..++..+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 445555566666666666666666666555422 222121 111111222222333344444444
Q ss_pred cCC---CCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH-HHHHHH--HHHhcCChHHHHHHHHhC-CCCC
Q 006627 471 SGV---KPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH-YGCMVD--LLGRAGLLDEAHEMIKSM-PLRP 543 (638)
Q Consensus 471 ~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~--~~~~~g~~~~A~~~~~~~-~~~p 543 (638)
... +.+...+..+...+...|++++|.+.+++..+. .|+... ...++. .....++.+++.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 321 126677777888888888888888888888763 233221 001222 223347777888888776 4445
Q ss_pred C-H--hhHHHHHHHHhhcCChHHHHHHHH--HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 544 N-M--IVWGALLAASKLHKNPSMGEIAAT--QILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 544 ~-~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
+ + ....++.+.+.+.|++++|.+.++ .+.+..|++ ..+.+++.++.+.|+.++|.++|++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 3 566788899999999999999999 577788875 446699999999999999999998754
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.1e-12 Score=127.55 Aligned_cols=244 Identities=10% Similarity=0.073 Sum_probs=193.9
Q ss_pred CCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCC--CCcccHHHHHHHHHHhcCCHHHHHH
Q 006627 355 HCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGL--EVDVILKTALVDMYAKCGDVNGAYR 432 (638)
Q Consensus 355 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 432 (638)
-+..+|+..|...... +.-+......+-.+|...+++++++++|+.+.+..- --+..+|...+=.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567899999885443 233334555777899999999999999999988531 1245566665533322 11222
Q ss_pred HH----HcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627 433 LF----SEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGL 507 (638)
Q Consensus 433 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 507 (638)
.+ -...+..+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+.++.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 22 2233457889999999999999999999999999975 56 557888888888999999999999999874
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHH
Q 006627 508 GLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVL 584 (638)
Q Consensus 508 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 584 (638)
+.|. -..|..++..|.++++++.|.-.|+++ .+.|. ......++..+.+.|+.++|++++++++.++|.|+..-+.
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 3443 355667788999999999999999998 67775 5666777888899999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 585 MSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
.+.++...+++++|+..++++++-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999999753
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=4.4e-11 Score=119.45 Aligned_cols=253 Identities=10% Similarity=-0.023 Sum_probs=154.9
Q ss_pred HHHHhcCChHHHHHHHhcCCC--CCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchH
Q 006627 318 DMYGKCREIRSARTLFDGMKS--KDV--MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALE 393 (638)
Q Consensus 318 ~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 393 (638)
......|+.+.|...+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-+......+...+...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 344445555555555554321 121 122223455556666666666666666543 223344555556666666666
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHH---H----hcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHH
Q 006627 394 MGKWLHTYIEKQGLEVDVILKTALVDMY---A----KCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALI 463 (638)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 463 (638)
.+.+.+..+.+.+..+.......-..++ . .....+...+.++.... .++..+..+...+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 6666666666665322221111111111 1 12223344445555442 367777888888888888999999
Q ss_pred HHHHHHHcCCCCcHHH--H-HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--
Q 006627 464 FFVDMERSGVKPNGIT--F-IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKS-- 538 (638)
Q Consensus 464 ~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 538 (638)
.+++..+. .||... + ..........++.+.+.+.+++..+.....|+.....++...+.+.|++++|.+.|+.
T Consensus 285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 98888876 344432 1 1122223445778888888888876433333326677888999999999999999994
Q ss_pred C-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 539 M-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 539 ~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
. ...|+...+..+...+.+.|+.++|.+++++++.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 5678888888889999999999999999998865
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.9e-10 Score=107.02 Aligned_cols=353 Identities=12% Similarity=0.061 Sum_probs=210.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHH--HHHHHh
Q 006627 208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITIL--SLIIEC 285 (638)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~ 285 (638)
|....-.....+-+.|..+.|+..|......-+..|.+-+....-..+.+.+.. ... |...|...+. .+..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHHHH
Confidence 444444445556677888888888877665434444433332222222222222 111 1222222222 233345
Q ss_pred cccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC------chhHHHHHHHHHhcCCHHH
Q 006627 286 GFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKD------VMIWNAVISAYAQAHCIDK 359 (638)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~ 359 (638)
-...+.+++.+-.+...+.|++.+...-+....+.-...|++.|+.+|+++.+.| ..+|+.++ |.+..+..
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk- 314 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH-
Confidence 5555777777777777888888777777777777778888899999988887653 34555544 33333222
Q ss_pred HHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC-
Q 006627 360 AFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI- 438 (638)
Q Consensus 360 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 438 (638)
+..+-+-...--+-.+.|...+.+.|+-.++.+.|..+|++..+.+ +.....++.+.+-|....+...|.+-++...
T Consensus 315 -Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 -LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred -HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 1112111111012233466666677777778888888888887766 5566677777777777777777777777655
Q ss_pred --CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHH
Q 006627 439 --YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHY 516 (638)
Q Consensus 439 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 516 (638)
..|-..|-.|.++|.-.+.+.=|+-+|++..+.. +-|...|.+|..+|.+.++.++|++.|..... .-..+...+
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l 469 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSAL 469 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHH
Confidence 3355667777777777777777777777777652 33556777777777777777777777777765 333355667
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 517 GCMVDLLGRAGLLDEAHEMIKSM-------P-LRPN-MIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
..|.+.+.+.++.++|...+.+. + ..|. ..+..-|...+.+.+++++|.....++..
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77777777777777777766554 1 1221 12222234445556666665554444433
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.4e-10 Score=108.12 Aligned_cols=263 Identities=10% Similarity=-0.015 Sum_probs=207.2
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627 340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVD 419 (638)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (638)
++........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44445555666778899999999999977652 5555556666667778888777777777777654 777889999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 006627 420 MYAKCGDVNGAYRLFSEAIYRD---ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEG 496 (638)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 496 (638)
-|...|+..+|++.|.+...-| ...|-.+..+|.-.|..++|+..+...-+. ++-....+-.+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999998866443 368999999999999999999988877654 122223344555668889999999
Q ss_pred HHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----C---CC-CHhhHHHHHHHHhhcCChHHHHHH
Q 006627 497 KSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP-----L---RP-NMIVWGALLAASKLHKNPSMGEIA 567 (638)
Q Consensus 497 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~l~~~~~~~~~~~~A~~~ 567 (638)
.++|..+.. -.+.|+...+.+.......+.+.+|..+|+... . .+ =..+++.|+.++.+.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999874 334467778888888888899999999998761 1 11 234677888899999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+++++.+.|.++.++..+|-+|...|+.+.|.+.|.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987753
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=3.2e-13 Score=128.03 Aligned_cols=254 Identities=14% Similarity=0.088 Sum_probs=76.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCccCChHhHHH-HHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCC
Q 006627 247 ISGYIRCNEINEGVRLFAEMIEENVFPSEITILS-LIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCRE 325 (638)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (638)
...+.+.|++++|+++++........|+...|.. +...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3444455555555555544333321233333322 222333345555555555555443322 33344444444 45666
Q ss_pred hHHHHHHHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCChhhHHHHHHHHhccCchHHHHHHHHHH
Q 006627 326 IRSARTLFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNEVTMVGLLSLCTEAGALEMGKWLHTYI 402 (638)
Q Consensus 326 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 402 (638)
+++|..++...-+ +++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.+.|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666554422 244455556666666677777776666654322 2334445555556666666667777666666
Q ss_pred HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 006627 403 EKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT 479 (638)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 479 (638)
.+.. |.|..+...++..+...|+.+++.++++... ..|+..+..+..++...|++++|+..+++..... +.|+.+
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 6654 4455566666666666666666555444332 3345555566666666666666666666666542 335555
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHh
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMV 504 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~ 504 (638)
...+..++...|+.++|.++.+++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 6666666666666666666655544
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.3e-11 Score=114.27 Aligned_cols=198 Identities=14% Similarity=0.020 Sum_probs=163.7
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627 410 DVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA 486 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 486 (638)
....+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888888999999888887652 245677778888899999999999999988764 4456778888889
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMG 564 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A 564 (638)
+...|++++|.+.++++............+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999864222234456777888999999999999999887 4344 466788888999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
...++++.+..|.++..+..++.++...|++++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998988888999999999999999999999887653
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.4e-10 Score=102.62 Aligned_cols=323 Identities=12% Similarity=0.071 Sum_probs=169.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCC--CCcccHHH-HHHHHHhCCChHHHHHHHHHHHHcCccCChHh-HHHHHHHhccc
Q 006627 213 TALIDMYSKCGNLAYAKQLFNRLNQ--NSVVSWTV-MISGYIRCNEINEGVRLFAEMIEENVFPSEIT-ILSLIIECGFV 288 (638)
Q Consensus 213 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~ 288 (638)
.+|.......-++.+|++++.++.. |+....|. +.-+|.+..-++-+.++++--.+. .||+.. .+.......+.
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhh
Confidence 4555555556678888888888876 44444444 345677778888888888776664 354432 23222222232
Q ss_pred CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHh-----cCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 006627 289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGK-----CREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFEL 363 (638)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 363 (638)
=+-..+++-.+.+.+.+-.. -..+.-+++ ...-+.|+.++-.+.+.-+..--.|+--|.+++++.+|..+
T Consensus 233 ~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred hccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHH
Confidence 22233333333333322111 011112222 12335566655554443334444555567788888888888
Q ss_pred HHHHHHcCcCCChhhHHHHHHH-----HhccCchHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006627 364 FIHMKVSKVRPNEVTMVGLLSL-----CTEAGALEMGKWLHTYIEKQGLEVDV-ILKTALVDMYAKCGDVNGAYRLFSEA 437 (638)
Q Consensus 364 ~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (638)
.+++.- ..|-......+..+ ........-|.+.|+..-.++...|. .--.++...+.-..++++++.++..+
T Consensus 308 ~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 308 CKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776531 23333333333222 12223455666777666665544432 23344455555556677777766655
Q ss_pred C----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627 438 I----YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITF-IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512 (638)
Q Consensus 438 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 512 (638)
. ..|...+ .+.++.+..|++.+|.++|-+.....++ |..+| ..|.++|.+.+.++.|..++-++ ..+.+
T Consensus 386 ~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~----~t~~e 459 (557)
T KOG3785|consen 386 ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT----NTPSE 459 (557)
T ss_pred HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc----CCchh
Confidence 4 2233332 3566777777777777777665533322 33444 34455667777777776655443 22222
Q ss_pred hhHH-HHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHH
Q 006627 513 IEHY-GCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGA 550 (638)
Q Consensus 513 ~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 550 (638)
..+. ..+..-+.+++.+--|.+.|+.+ ...|++..|..
T Consensus 460 ~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 460 RFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCC
Confidence 2222 23334555666666666666666 45666666643
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=6.5e-10 Score=104.23 Aligned_cols=406 Identities=11% Similarity=-0.029 Sum_probs=263.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCC-HhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006627 139 SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPS-EVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID 217 (638)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (638)
.+-....-|.++|.+++|++.|.+..+ +.|+ +..|...-.+|...|+++.+.+--...++..+.. +..+..-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y---~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY---VKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH---HHHHHHHHH
Confidence 344556678888999999999998887 5777 7788888888888899888887777777665543 445555566
Q ss_pred HHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHH--------HHH-c--CccCChHhHHHHHHHhc
Q 006627 218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAE--------MIE-E--NVFPSEITILSLIIECG 286 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~-~--~~~p~~~~~~~ll~~~~ 286 (638)
++-..|++++|+.= .+-.++...|....-.--+.++++. -.. . .+.|+.....+.+..+-
T Consensus 192 A~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 192 AHEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred HHHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 77777888877542 1222233333322222222233322 111 1 23355444444444332
Q ss_pred ccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHH----Hh-cCChHHHHHHHhcC-------CCC---Cch------hHH
Q 006627 287 FVGGLQLGKWLHAYILRNGFEFSLAMANALVDMY----GK-CREIRSARTLFDGM-------KSK---DVM------IWN 345 (638)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~A~~~~~~~-------~~~---~~~------~~~ 345 (638)
..-. .....+.......+...+ .. ...+..|...+.+- .+. |.. +..
T Consensus 263 ~~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 263 ADPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred cccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 1100 000000000111111111 00 01222222222211 111 111 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627 346 AVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG 425 (638)
Q Consensus 346 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (638)
....-+.-.|+.-.|..-|+........++. .|.-+-..|....+.+...+.|+...+.+ +.++.+|..-..++.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 1111234568888899999988775433332 26666677889999999999999999887 778889999999999999
Q ss_pred CHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627 426 DVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK 502 (638)
Q Consensus 426 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 502 (638)
++++|..-|++...- ++..|-.+..+..+.+++++++..|++.+.. ++.-+..|+.....+...++++.|.+.|+.
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999987744 4566777777777889999999999999886 455668999999999999999999999999
Q ss_pred HhhhcCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHH
Q 006627 503 MVHGLGLVPK---------IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQI 571 (638)
Q Consensus 503 ~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 571 (638)
.++ +.|+ +.+-..++..-. .+++..|.++++++ .+.|. ...+.++...-.++|+.++|+++|++.
T Consensus 488 ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 488 AIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 875 3343 222222222222 38999999999998 67775 678889999999999999999999999
Q ss_pred hccCCC
Q 006627 572 LEIEPQ 577 (638)
Q Consensus 572 ~~~~p~ 577 (638)
..+--.
T Consensus 564 a~lArt 569 (606)
T KOG0547|consen 564 AQLART 569 (606)
T ss_pred HHHHHh
Confidence 876544
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.6e-10 Score=105.15 Aligned_cols=282 Identities=12% Similarity=-0.006 Sum_probs=217.4
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHH
Q 006627 305 GFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVG 381 (638)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 381 (638)
+..-+..+...-.+-+...+++.+..++.+.+.+.|+ ..+..-|.++...|+..+-..+=.++.+. .+-.+.+|-.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 3455666677777888889999999999998876544 45555677888899988888888888765 3556678888
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCCh
Q 006627 382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCG 458 (638)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 458 (638)
+.-.|...|..++|.++|.+....+ +.=...|-.+...|.-.|.-++|+..+....+ ..-..+--+.--|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 8888888899999999999887654 33456788888999999999999988765431 1222222334457778999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-CC---C-CChhHHHHHHHHHHhcCChHHHH
Q 006627 459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-GL---V-PKIEHYGCMVDLLGRAGLLDEAH 533 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~l~~~~~~~g~~~~A~ 533 (638)
+.|.+.|.+..... +.|+..++.+.-.....+.+.+|..+|+...... .+ . ....+++.|+.++.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999988542 4455677777766777899999999999887311 11 1 13456888999999999999999
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 534 EMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 534 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
..+++. ...| +..++.++.-.|...|+++.|...|.+++-+.|++..+-..|..+.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999998 3344 7888999999999999999999999999999999977766666553
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.4e-10 Score=102.94 Aligned_cols=290 Identities=13% Similarity=0.079 Sum_probs=177.7
Q ss_pred cCChHHHHHHHhcCCCCCchhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCh---hhHHHHHHHHhccCchHHHH
Q 006627 323 CREIRSARTLFDGMKSKDVMIW---NAVISAYAQAHCIDKAFELFIHMKVSKVRPNE---VTMVGLLSLCTEAGALEMGK 396 (638)
Q Consensus 323 ~~~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~ 396 (638)
..+.++|.+.|-+|.+.|+.++ -+|.+.|-+.|..|.|+++-+.+..+.--+.. ...-.|-.-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3455666666666555444433 34555566666666666666655442111111 11223334455566666666
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCch--------hHHHHHHHHHhcCChHHHHHHHHHH
Q 006627 397 WLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDIC--------MWNAMMAGYGMHGCGEEALIFFVDM 468 (638)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~m 468 (638)
.+|..+.+.+ ..-......|+..|....++++|++.-+++.+-+.. .|..|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6666665543 233444555666666666666666665554433222 3344555555667788888888887
Q ss_pred HHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhh
Q 006627 469 ERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIV 547 (638)
Q Consensus 469 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 547 (638)
.+.+ +.....=..+.+.....|+++.|.+.|+...+. +..--+.+...|..+|...|+.++...++.++ ...+....
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 7763 223334445566777888888888888888764 33334566777888888888888888888776 44555555
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627 548 WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA--VANRWNDVAGVRRVMKEIRVKKEPG 615 (638)
Q Consensus 548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ 615 (638)
...+........-.+.|...+-+-+...|.-...+.++.--.. ..|++.+-...++.|....++..|.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 5555555555566777777777778888875444444433333 3356888888899998887777774
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=5.1e-09 Score=104.02 Aligned_cols=493 Identities=16% Similarity=0.082 Sum_probs=253.0
Q ss_pred hCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHH---cccCchHH-------------------HH----HHHHHHHhC
Q 006627 48 KNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACA---QVLMTHLG-------------------KE----IHGFAIKNG 101 (638)
Q Consensus 48 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~~ 101 (638)
..++.+.++.-+......+.+.+..++..+...+. ..++.+++ .- .+..+....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777766666666666666555432 22344443 11 111122223
Q ss_pred CCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHH
Q 006627 102 LDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISM 178 (638)
Q Consensus 102 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 178 (638)
+.-+..+|..+.-++.+.|+++.+.+.|++... .....|+.+...|...|.-..|..+++.-....-.|+..+--.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 445566666666666666666666666665443 23445666666666666666666666655443222433332222
Q ss_pred HH-Hhc-ccCchHHHHHHHHHHHHhc--cCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCC
Q 006627 179 VS-LFA-DVADVDLGKAIHACVVRNC--KDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCN 254 (638)
Q Consensus 179 l~-~~~-~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 254 (638)
.. .|. +.+..+++.......+... ......+..+..+.-+|...-. +.+..+ -+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHHH
Confidence 22 221 3344444444444443311 1111112222222222211100 000000 0111
Q ss_pred ChHHHHHHHHHHHHcC-ccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 006627 255 EINEGVRLFAEMIEEN-VFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLF 333 (638)
Q Consensus 255 ~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (638)
...++++.+++..+.+ -.|+...| +---++-.++++.|.+..++..+.+-..+...+..|.-.+...+++.+|+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2345666666665543 22332223 22234556677777777777777655666677777777777777777777776
Q ss_pred hcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCC
Q 006627 334 DGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ--GLE 408 (638)
Q Consensus 334 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~ 408 (638)
+..... |-.....-+..-..-++.++++.....+...- + +...+ ...++-....+....+.-. ...
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w-e-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW-E-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH-H-hhhhH-------hhhhhhhhhhhhhcccccCccccc
Confidence 654432 11111111222233455555555554443210 0 00000 0000000000110000000 000
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--c------HHHH
Q 006627 409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP--N------GITF 480 (638)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~------~~~~ 480 (638)
....++..+.......+.. -..+.. +....+.| + ...|
T Consensus 608 ~a~s~sr~ls~l~a~~~~~----------------------------~~se~~------Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKS----------------------------AGSELK------LPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred ccchhhHHHHHHHHhhhhh----------------------------cccccc------cCcccccCCCCchHHHHHHHH
Confidence 0111121111111100000 000000 01001111 1 1234
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhc
Q 006627 481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLH 558 (638)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 558 (638)
......+.+.+..++|...+.++.. -.+-....|...+..+...|.+++|.+.|..+ ...|+ +.....+...+.+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4455566777778888877777754 33334566777778888889999999988877 56675 67788888899999
Q ss_pred CChHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 559 KNPSMGEI--AATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 559 ~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
|+...|.. ++..+++++|.++.+|..+|.++.+.|+.++|.+.|+...+
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 98888888 99999999999999999999999999999999999998754
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.3e-09 Score=100.16 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 006627 253 CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTL 332 (638)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (638)
.|++.+|.++...-.+.+-.| ...|..-..+.-..|+.+.+-+++.+..+.--.++..+.-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544332 2223333444445555555555555555443334444444444445555555555444
Q ss_pred HhcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006627 333 FDGMK---SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSK 371 (638)
Q Consensus 333 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 371 (638)
++++. ..++........+|.+.|++.....++..|.+.|
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 44332 2233444444445555555555555555554444
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=8.6e-10 Score=101.24 Aligned_cols=278 Identities=14% Similarity=0.021 Sum_probs=153.3
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC--C--chhHHHHHHHHHhcCCHHHHHHH
Q 006627 288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK--D--VMIWNAVISAYAQAHCIDKAFEL 363 (638)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~ 363 (638)
.|++.+|++......+.+-.| ...|..-.++--..|+.+.+-..+.+..+. | ....-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544444222 122223334444455555555555554432 1 22233334445555555555555
Q ss_pred HHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc-------ccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627 364 FIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD-------VILKTALVDMYAKCGDVNGAYRLFSE 436 (638)
Q Consensus 364 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (638)
+.++.+.+ +-+........++|.+.|++.....++..+.+.+.-.+ ..++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55554432 22233344445555555555555555555555544332 23344444444444444444445554
Q ss_pred CC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh
Q 006627 437 AI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI 513 (638)
Q Consensus 437 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 513 (638)
.+ +.++..-..++.-+.+.|+.++|.++.++..+++..|+ -...-.+.+.++...-++..++..+.++..|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 44 33455555566666666677777777766666655554 1122235566666666666666666444444
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
..+..|+..|.+.+.+.+|.+.|+.. +..|+..+|..+..++.+.|+.+.|.+..++++-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56667777777777777777777765 6677777777777777777777777777777664
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=4.4e-08 Score=95.29 Aligned_cols=525 Identities=11% Similarity=0.081 Sum_probs=295.3
Q ss_pred hhHHHHhhhhh-hcHHHHHHHHHhCCCchhHHHHHHHHHHC-CCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCC
Q 006627 26 KFSYTNIINPL-TRYNSLVTSYIKNNKPSSALNIYAFMRKN-GSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLD 103 (638)
Q Consensus 26 ~~~A~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 103 (638)
++.+.....+| +.|-.-+..+..+++.......|+..++. .+.-....|...++-....+-++.+.++++.-++.
T Consensus 91 ~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--- 167 (835)
T KOG2047|consen 91 FERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--- 167 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---
Confidence 34455555555 66777777777777777777777776653 23334446666666666666677777777766643
Q ss_pred CChhHHHHHHHhhhcCCChhHHHHHhccCCCCC----------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHh
Q 006627 104 GDAYVSNALIQMYSECGSLVSARYLFDEMPNRD----------VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEV 173 (638)
Q Consensus 104 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 173 (638)
++..-+-.|..+++.+++++|-+.+..+...+ -..|..+-....++.+.-..+++
T Consensus 168 -~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-------------- 232 (835)
T KOG2047|consen 168 -APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-------------- 232 (835)
T ss_pred -CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH--------------
Confidence 33335556666677777777776666655321 12233333333322221111111
Q ss_pred hHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCC--CcccHHHHHHHHH
Q 006627 174 AMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQN--SVVSWTVMISGYI 251 (638)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~ 251 (638)
..++......-.+. --..|++|.+.|.+.|+++.|..++++..+. .+.-+..+.++|+
T Consensus 233 ------------------daiiR~gi~rftDq--~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 233 ------------------DAIIRGGIRRFTDQ--LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA 292 (835)
T ss_pred ------------------HHHHHhhcccCcHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH
Confidence 11111111111111 2346778888888888888888888776542 2233444444444
Q ss_pred hCCChHHHHHHHHHHH--HcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhc-----------CCCchhhHHHHHH
Q 006627 252 RCNEINEGVRLFAEMI--EENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNG-----------FEFSLAMANALVD 318 (638)
Q Consensus 252 ~~g~~~~a~~~~~~m~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~ 318 (638)
.-....-+..+ ++. +.+-.-+... ++....-|+.+...+ -+.+...+..-+.
T Consensus 293 ~FEE~~~~~~m--e~a~~~~~n~ed~~d-------------l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 293 QFEESCVAAKM--ELADEESGNEEDDVD-------------LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred HHHHHHHHHHH--hhhhhcccChhhhhh-------------HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 32211111110 010 0011111111 111222222222211 1222233332222
Q ss_pred HHHhcCChHHHHHHHhcCCC---C------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC---hhhHHHHHHHH
Q 006627 319 MYGKCREIRSARTLFDGMKS---K------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN---EVTMVGLLSLC 386 (638)
Q Consensus 319 ~~~~~~~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~ 386 (638)
+..|+..+-...|.+... | -...|..+...|-..|+.+.|..+|++......+-- ..+|......=
T Consensus 358 --l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 358 --LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred --hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 223555555555554432 1 224688889999999999999999998876543221 12333333444
Q ss_pred hccCchHHHHHHHHHHHHhC-----------CCC------cccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHH
Q 006627 387 TEAGALEMGKWLHTYIEKQG-----------LEV------DVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMM 449 (638)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 449 (638)
.+..+++.|.++.+...... .++ +..++...++.....|-++....+|+++..--+.|-.+++
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~ 515 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII 515 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 56677888888777654321 111 2345555666667788888888999888755433333322
Q ss_pred ---HHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHh---ccCcHHHHHHHHHHHhhhcCCCCChh--HHHHHH
Q 006627 450 ---AGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACS---HAGLVTEGKSVFDKMVHGLGLVPKIE--HYGCMV 520 (638)
Q Consensus 450 ---~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~ 520 (638)
..+-.+.-++++.+++++-+..--.|+. ..|++.+.-+. .....+.|..+|+++.+ +.+|... .|-...
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA 593 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYA 593 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 2233455678999999886655445665 35655555443 23468999999999998 7777542 222222
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCC
Q 006627 521 DLLGRAGLLDEAHEMIKSMP--LRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG--YNVLMSNIYAVANR 594 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~ 594 (638)
..=.+-|....|+++++++. .++. ...|+..+.-....=-+..-+.+|+++++.-|++-. .-.-.+..-.+.|.
T Consensus 594 ~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 594 KLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh
Confidence 22345588899999999983 3332 355666654433333456678899999999998543 34456778899999
Q ss_pred HHHHHHHHHHHhh
Q 006627 595 WNDVAGVRRVMKE 607 (638)
Q Consensus 595 ~~~A~~~~~~~~~ 607 (638)
.+.|..++..-.+
T Consensus 674 idRARaIya~~sq 686 (835)
T KOG2047|consen 674 IDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999885544
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.4e-08 Score=97.96 Aligned_cols=436 Identities=9% Similarity=0.024 Sum_probs=258.7
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcC
Q 006627 144 IRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCG 223 (638)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (638)
+.-+..+|++++|.....++...+ +-+...+..-+-++...+.++.|..+...-..... +...+-.=.-+..+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~----~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV----INSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh----cchhhHHHHHHHHHcc
Confidence 445567788999999999988754 33344555666677778888877754433221111 1111111223344789
Q ss_pred ChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHHHHHHHHH
Q 006627 224 NLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGKWLHAYIL 302 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 302 (638)
..|+|...++...+.+..+...-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+... ..+ ..+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QLLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HHHH
Confidence 9999999999666666667777778888999999999999999776532211 111122211111 000 0122
Q ss_pred HhcCCCchhhHHH---HHHHHHhcCChHHHHHHHhcC--------CCCCc----------hhHHHHHHHHHhcCCHHHHH
Q 006627 303 RNGFEFSLAMANA---LVDMYGKCREIRSARTLFDGM--------KSKDV----------MIWNAVISAYAQAHCIDKAF 361 (638)
Q Consensus 303 ~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~~~~~~a~ 361 (638)
.....| ..+|.. ..-.+...|++.+|+++++.. .+.|. ..-..+.-.+...|+..+|.
T Consensus 166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 222222 223333 344566789999999999876 22111 12234555677889999999
Q ss_pred HHHHHHHHcCcCCChhhHHHHH---HHHhccCchHH--HHHHHH------------HHHHhCCCCcccHHHHHHHHHHhc
Q 006627 362 ELFIHMKVSKVRPNEVTMVGLL---SLCTEAGALEM--GKWLHT------------YIEKQGLEVDVILKTALVDMYAKC 424 (638)
Q Consensus 362 ~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~ 424 (638)
.++....... .+|........ .+...-.++.. +...++ .+.... ......-+.++..| .
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH--h
Confidence 9999988775 44443222221 12222111111 111111 111110 11111112333333 3
Q ss_pred CCHHHHHHHHHcCCCCC-chhHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHH
Q 006627 425 GDVNGAYRLFSEAIYRD-ICMWNAMMAGYG--MHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSV 499 (638)
Q Consensus 425 ~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 499 (638)
+..+.+.++-....... ...+.+++..+. +...+..+.+++...-+. .|.. ......++.....|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45566777666665333 334444444332 233577888888887765 4443 4555666778899999999999
Q ss_pred HH--------HHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HhhHHHHHHHHhhcCChH
Q 006627 500 FD--------KMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--------PLRPN-MIVWGALLAASKLHKNPS 562 (638)
Q Consensus 500 ~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~ 562 (638)
+. .+.+ +...+.+...+...+.+.++.+-|..++.++ ...+. ..++..+...-.++|+.+
T Consensus 399 l~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 99 4433 2334455666777888888777777766655 11121 234444555566789999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627 563 MGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
+|...++++++.+|++......++.+|+.. +.+.|..+=+
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999999999998876 5666666544
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=6.4e-08 Score=98.69 Aligned_cols=541 Identities=12% Similarity=0.055 Sum_probs=292.7
Q ss_pred hHHHhhhhcCChhHHHHhhhhh------hc------HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 006627 15 QCHAHIIKTHFKFSYTNIINPL------TR------YNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACA 82 (638)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~------~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 82 (638)
.+.+.|.+.|-...|++.+.++ .. =..++ .|...-.++++.+.+..|...+++-+-.+...+..-|.
T Consensus 611 ~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~ 689 (1666)
T KOG0985|consen 611 EIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYH 689 (1666)
T ss_pred HHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4556777888888888888877 11 11222 33344567888888888887777766666655555555
Q ss_pred cccCchHHHHHHHHHHHh-----------CCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC-----------------
Q 006627 83 QVLMTHLGKEIHGFAIKN-----------GLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN----------------- 134 (638)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------------- 134 (638)
..-..+...++|+..... ++..|+.+.-..|.+-++.|++.+.+++.++-.-
T Consensus 690 eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~D 769 (1666)
T KOG0985|consen 690 EQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTD 769 (1666)
T ss_pred HHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccc
Confidence 444445555555554321 3466778888888888888888888888765321
Q ss_pred --C-----Ccc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCC
Q 006627 135 --R-----DVV-SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEK 206 (638)
Q Consensus 135 --~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 206 (638)
| |.. ..+-|+ .|.-.++..+-+++|-+- +.|+ -.-.++.++....-.+...+-+-..+...++.
T Consensus 770 qlPLiiVCDRf~fVhdlv-lYLyrnn~~kyIE~yVQk----vNps--~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~- 841 (1666)
T KOG0985|consen 770 QLPLIIVCDRFDFVHDLV-LYLYRNNLQKYIEIYVQK----VNPS--RTPQVVGALLDVDCSEDFIKNLILSVRGQFPV- 841 (1666)
T ss_pred cCceEEEecccccHHHHH-HHHHHhhHHHHHHHHHhh----cCCc--ccchhhhhhhcCCCcHHHHHHHHHHHhccCCh-
Confidence 1 111 111111 122222333333333221 1121 11112222222222222211111111111111
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHH
Q 006627 207 LGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLII 283 (638)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 283 (638)
..|..-.-+.++..--...++...+ .+..++|+|.+.|..+++--+.. ++-|..-=+.++.
T Consensus 842 ------deLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~f----------LkeN~yYDs~vVG 905 (1666)
T KOG0985|consen 842 ------DELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERF----------LKENPYYDSKVVG 905 (1666)
T ss_pred ------HHHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHh----------cccCCcchhhHHh
Confidence 2233333344444444444443332 34556666666665543322110 0111111112223
Q ss_pred HhcccCChhhHHHHHHH----HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC-----------------CCCch
Q 006627 284 ECGFVGGLQLGKWLHAY----ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK-----------------SKDVM 342 (638)
Q Consensus 284 ~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------~~~~~ 342 (638)
-||...++..|.-.|+. ..-.++.-....|....+.+.+..+.+--.+++.+-. ..|+.
T Consensus 906 kYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe 985 (1666)
T KOG0985|consen 906 KYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPE 985 (1666)
T ss_pred hhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChH
Confidence 33333333222211110 0000111223344455555555555544444442211 12555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCc--CCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcc-------cH
Q 006627 343 IWNAVISAYAQAHCIDKAFELFIHMKVSKV--RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDV-------IL 413 (638)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 413 (638)
..+.-+.++...+-+.+-+++++++.-..- .-+...-+.|+-.. -..+...+.++.+++-..+ .|+. ..
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyD-a~~ia~iai~~~L 1063 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYD-APDIAEIAIENQL 1063 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCC-chhHHHHHhhhhH
Confidence 566677788888888888888888753221 11111122222222 2223344444444443322 1111 11
Q ss_pred HHHHHHHHH--------------hcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 006627 414 KTALVDMYA--------------KCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT 479 (638)
Q Consensus 414 ~~~l~~~~~--------------~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 479 (638)
|.--...|- ..+.++.|.++-++.. .+..|..+..+-.+.|...+|++-|-+ ..|+..
T Consensus 1064 yEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~ 1135 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSN 1135 (1666)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHH
Confidence 111111111 1233344444433333 345799999999999999999887754 346678
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcC
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHK 559 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 559 (638)
|..+++.+.+.|.|++-.+++..+.++ .-+|.+. ..|+-+|++.++..+-.+++. .|+..-......-|...|
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhh
Confidence 999999999999999999999988775 6667655 468889999999999888776 678888888899999999
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
.++.|.-.|. +.+.|..|+..+...|+|..|.+.-++.
T Consensus 1209 ~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1209 MYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999888876 4456888899999999999888776654
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.6e-08 Score=93.13 Aligned_cols=271 Identities=9% Similarity=-0.010 Sum_probs=175.5
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627 304 NGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMI---WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV 380 (638)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 380 (638)
.-++-|......+...+...|+.++|+..|++...-|+.+ .....-.+.+.|+++....+...+.... .-....|.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3456677777888888888888888888887765444332 2222334456777777777666664321 11222222
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCC
Q 006627 381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGC 457 (638)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~ 457 (638)
.-....-..++++.|..+-++.++.+ +.+...+-.-..++...|++++|.-.|+... .| +..+|.-|+.+|...|+
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 22233334567777777777766654 4445555555566777788888887777654 33 66788888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHh-ccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 006627 458 GEEALIFFVDMERSGVKPNGITFIGLL-NACS-HAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHE 534 (638)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 534 (638)
+.+|.-.-+..... ++.+..+...+. ..|. ...--++|.+++++.. .+.|+- ...+.+...+.+.|+..+++.
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 88887777665554 344555555552 3333 2233467777777765 344543 455666677778888888888
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 535 MIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 535 ~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
++++. ...||....+.|.......+.+.+|...|..++.++|++..
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 88776 56777777788888888888888888888888888887643
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=4.2e-07 Score=89.00 Aligned_cols=586 Identities=11% Similarity=0.050 Sum_probs=331.6
Q ss_pred chHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHH
Q 006627 9 NLEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKA 80 (638)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 80 (638)
....+..+++.| ..+.+..-+...+.+ .+....--.+...|+.++|.+....-.+.. .-+...|..+.-.
T Consensus 7 E~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHH
Confidence 344555566665 444555544444444 333333334456778888887777766643 2344455555555
Q ss_pred HHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 006627 81 CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEAL 157 (638)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 157 (638)
+....++++|...+......+ +.|..++.-+.-.=++.|+++.....-....+ .....|..+..++.-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888888776 55667776665555666677666655554443 23457888888888889999999
Q ss_pred HHHHHhHHCC-CcCCHhhHHHHHHHh------cccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006627 158 EVMREMRFMD-IRPSEVAMISMVSLF------ADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQ 230 (638)
Q Consensus 158 ~~~~~m~~~~-~~p~~~t~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 230 (638)
.+++...+.. -.|+...|......+ ...|..+.+.+.+......-.+ ....-..-...+.+.+++++|..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---kla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---KLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---HHHHhhhHHHHHHHHhhHHhHHH
Confidence 9988887764 256766665544332 3455555555554443322221 22233444567778888899988
Q ss_pred HHhccCC--CCcccHHHH-HHHHHhCCChHHHH-HHHHHHHHcCccCChHhHH-HHHHHhcccCChhhHHHHHHHHHHhc
Q 006627 231 LFNRLNQ--NSVVSWTVM-ISGYIRCNEINEGV-RLFAEMIEENVFPSEITIL-SLIIECGFVGGLQLGKWLHAYILRNG 305 (638)
Q Consensus 231 ~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~ 305 (638)
++..+.. ||...|... ..++.+-.+.-+++ .+|....+. .|-...-. .=+.......-.+....++..+.+.|
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 8888876 444444443 34443333333333 555555443 11111100 00111111222344455666667777
Q ss_pred CCCchhhHHHHHHHHHhcCChHH-HHHHHhcCC--------------CCCch--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006627 306 FEFSLAMANALVDMYGKCREIRS-ARTLFDGMK--------------SKDVM--IWNAVISAYAQAHCIDKAFELFIHMK 368 (638)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~--------------~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~ 368 (638)
+++-...+.++-.-=.+..=+++ +..+...+. .|.+. ++-.++..+-+.|+++.|...++...
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 66533333222211000000000 111111111 12233 34457788999999999999999876
Q ss_pred HcCcCCChh-hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCc-----
Q 006627 369 VSKVRPNEV-TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDI----- 442 (638)
Q Consensus 369 ~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 442 (638)
.. .|+.. -|..-.+.+...|+++.|..++++..+.+ .+|..+-..-..-..+.++.++|.++.....+.+.
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 54 56554 34444578889999999999999999877 67777766777888899999999998876664422
Q ss_pred -----hhHHHH--HHHHHhcCChHHHHHHHHHHHHcC--C---CCcH----------HHHHHHHHHHhccCc-------H
Q 006627 443 -----CMWNAM--MAGYGMHGCGEEALIFFVDMERSG--V---KPNG----------ITFIGLLNACSHAGL-------V 493 (638)
Q Consensus 443 -----~~~~~l--~~~~~~~~~~~~A~~~~~~m~~~~--~---~p~~----------~~~~~l~~~~~~~~~-------~ 493 (638)
.+|-.+ ..+|.+.|++..|++-|......- + +-|- .+|.-|+.-.-...+ .
T Consensus 476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa 555 (700)
T KOG1156|consen 476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAA 555 (700)
T ss_pred HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHH
Confidence 233333 346777777777776665543320 0 1222 233333332222111 2
Q ss_pred HHHHHHHHHHhhhcCC-CCChhHHHHHH----HHHHhc-CChHHHHHHHHhC--------------CCCCCHhhHHHHHH
Q 006627 494 TEGKSVFDKMVHGLGL-VPKIEHYGCMV----DLLGRA-GLLDEAHEMIKSM--------------PLRPNMIVWGALLA 553 (638)
Q Consensus 494 ~~a~~~~~~~~~~~~~-~p~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~ 553 (638)
..|+++|=.|...... .+.......+- ....++ .+-.+|.+--+.+ +..||.. .+..
T Consensus 556 ~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~ge 632 (700)
T KOG1156|consen 556 KGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGE 632 (700)
T ss_pred HHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhh
Confidence 3456666666543100 01111111111 111111 1111121111111 2334444 2334
Q ss_pred HHhhcCC-hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 554 ASKLHKN-PSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 554 ~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
......+ .++|...+..+...-+++...|.+-..+|.+.|.+.-|..........
T Consensus 633 kL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 633 KLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred hHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444444 577999999999999999999999999999999999999998877543
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4.7e-11 Score=105.86 Aligned_cols=223 Identities=10% Similarity=-0.038 Sum_probs=138.3
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CchhHHHHHHHHHhcCCh
Q 006627 382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DICMWNAMMAGYGMHGCG 458 (638)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 458 (638)
+-.+|.+.|.+.+|++.++...+. .|-+.+|-.|.+.|.+..++..|+.++.+... | |+....-+.+.+-..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 334444555555555554444443 23444445555555555555555555555442 1 222233344445555556
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006627 459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKS 538 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (638)
++|.++++...+.. +.+......+...|...++++.|+.+|+++.+- |+ .+++.|+.+.-++.-.+++|-++..|++
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666655542 334445555555555666666666666666552 33 3445555566566666666666666655
Q ss_pred C---CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 539 M---PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 539 ~---~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+ -.+|+ .+.|..+.......||+..|.+.|+-++..+|++.+.++.|+-+-.+.|++++|..+++...+..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 5 11232 56777777777888999999999999999999999999999999999999999999999886544
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=1.5e-10 Score=98.17 Aligned_cols=163 Identities=11% Similarity=-0.027 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG 524 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (638)
...|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+ --+-+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 3446667888888888888888888863 33446888888888899999999999988875 23335577888888889
Q ss_pred hcCChHHHHHHHHhCCCCC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 006627 525 RAGLLDEAHEMIKSMPLRP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG 600 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 600 (638)
..|++++|...|+++-..| -..+|..++....+.|+++.|...++++++++|+.+.....++...+..|+|..|.-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999998873233 256788888778888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC
Q 006627 601 VRRVMKEIRV 610 (638)
Q Consensus 601 ~~~~~~~~~~ 610 (638)
+++.....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 8888876655
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=2.5e-09 Score=95.15 Aligned_cols=286 Identities=15% Similarity=0.118 Sum_probs=145.8
Q ss_pred CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhc-CCCchhhHHHHHHHHHhcCChHHHHH
Q 006627 253 CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNG-FEFSLAMANALVDMYGKCREIRSART 331 (638)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (638)
+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|.++.+.+.++. .+.+...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~------------------- 107 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL------------------- 107 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH-------------------
Confidence 567888888888887631 1112222344444555555555555555544321 1111100
Q ss_pred HHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc-
Q 006627 332 LFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD- 410 (638)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 410 (638)
.....|..-|...|-+|.|..+|..+.+.| .--......|+..|-...+|++|+.+-.++.+.+-.+.
T Consensus 108 ----------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 108 ----------LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred ----------HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 112233444455555555555555554432 11222344455555555555555555555544432221
Q ss_pred ---ccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627 411 ---VILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL 484 (638)
Q Consensus 411 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 484 (638)
...|.-|...+....+.+.|..++.+..+. .+..--.+.+.....|+++.|++.++...+.+..--+.+...|.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 123334444444555666666666655532 23333344556666777777777777777664333345666677
Q ss_pred HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHhhHHHHHHHHhhc---CC
Q 006627 485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMI-KSMPLRPNMIVWGALLAASKLH---KN 560 (638)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~---~~ 560 (638)
.+|.+.|+.++....+..+.+. .+....-..+.+......-.+.|..++ +.+.-+|+...+..++...... |.
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 7777777777777777776642 233333334444444444445555544 3345567777777776655432 22
Q ss_pred hHHHHHHHHHHh
Q 006627 561 PSMGEIAATQIL 572 (638)
Q Consensus 561 ~~~A~~~~~~~~ 572 (638)
..+....++.++
T Consensus 334 ~k~sL~~lr~mv 345 (389)
T COG2956 334 AKESLDLLRDMV 345 (389)
T ss_pred hhhhHHHHHHHH
Confidence 344444444443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=1.3e-07 Score=92.36 Aligned_cols=462 Identities=14% Similarity=0.077 Sum_probs=236.2
Q ss_pred HHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 006627 81 CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEAL 157 (638)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 157 (638)
|...+++.......+.+++. .+-...+....--.+...|+-++|......-.. .+.+.|..+.-.+....++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 44566777777777777663 233344443333344566888888888876655 35567888888888888999999
Q ss_pred HHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 006627 158 EVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ 237 (638)
Q Consensus 158 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 237 (638)
++|..... +.|| +..++.-+.-.-+..|+++.....-....+
T Consensus 96 Kcy~nAl~--~~~d------------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 96 KCYRNALK--IEKD------------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHh--cCCC------------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99998877 4566 444444444444455555555544444433
Q ss_pred ---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-ccCChHhHHHHHHH------hcccCChhhHHHHHHHHHHhcCC
Q 006627 238 ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEEN-VFPSEITILSLIIE------CGFVGGLQLGKWLHAYILRNGFE 307 (638)
Q Consensus 238 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~ 307 (638)
.....|..+..+..-.|+...|..++++..+.. -.|+...|...... ....|..+.|.+.+..-... +.
T Consensus 138 l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~ 216 (700)
T KOG1156|consen 138 LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV 216 (700)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH
Confidence 234567778888888899999999998887764 24555555332221 12233334333333222111 00
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc--hhHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCcCCChhhHH-HH
Q 006627 308 FSLAMANALVDMYGKCREIRSARTLFDGMKSKDV--MIWN-AVISAYAQAHCIDKAF-ELFIHMKVSKVRPNEVTMV-GL 382 (638)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~-~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~-~l 382 (638)
.....-..-...+.+.+++++|..++..+..+++ ..|. .+..++.+-.+.-++. .+|....+. .|....-. .=
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlp 294 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLP 294 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchhcc
Confidence 0111112223334444555555555554443222 2222 2222222111112222 333322221 11111100 00
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 006627 383 LSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEAL 462 (638)
Q Consensus 383 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 462 (638)
++......-.+....++....+.|+++-. ..+...|-.....+ ++++ ++..|...=......
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~-----------Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEK-----------LVTSYQHSLSGTGMF 356 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHH-----------HHHHHHhhcccccCC
Confidence 11111111122223333334444433221 12222121111000 1110 111111100000000
Q ss_pred HHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 463 IFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 463 ~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
...+.-.. -+|.. .++..++..+-..|+++.|..+++.++ +..|+. +.|-.-.+.+...|++++|..++++.
T Consensus 357 ~~~D~~~~--E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 357 NFLDDGKQ--EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEA 431 (700)
T ss_pred Cccccccc--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 00000000 14444 456667778888999999999998887 445654 55666668888889999999999888
Q ss_pred C--CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------c-chH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 540 P--LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------Y-GYN--VLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 540 ~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~-~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
. ..||...-..-.....+.++.++|..+..+...-.-+- . -.| ..=|.+|.+.|++..|++=|..+.+
T Consensus 432 ~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 432 QELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 2 23444333344455567888899988888877644310 1 112 2337789999999999887766644
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=1e-09 Score=114.06 Aligned_cols=244 Identities=14% Similarity=-0.006 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHh---------ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627 356 CIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCT---------EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG 425 (638)
Q Consensus 356 ~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (638)
..++|...|++..+. .|+.. .+..+..++. ..++.++|...+++..+.+ |.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356788888887654 45433 3333333222 3345788999999988876 667788888888899999
Q ss_pred CHHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHH
Q 006627 426 DVNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFD 501 (638)
Q Consensus 426 ~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 501 (638)
++++|...|++.. .| +...+..+..++...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999998866 33 4567888888999999999999999999886 4443 334444555667899999999999
Q ss_pred HHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 502 KMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM-IVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 502 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
++.+. .+| ++..+..+..++...|+.++|...+.++ +..|+. ..+..+...+...| +.|...++++.+..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98763 334 4455677888899999999999999887 445553 34445555666666 47777777776633332
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 579 YGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+.....+..+|.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22233377778888888887777 8777654
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=103.44 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=185.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627 345 NAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC 424 (638)
Q Consensus 345 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (638)
+.+.++|.+.|-+.+|.+.|+.-... .|-+.||..|-.+|.+..++..|..++.+-.+.- |-++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56677778888888888777776554 4556677777778888888888888777766643 55555556667777788
Q ss_pred CCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 006627 425 GDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFD 501 (638)
Q Consensus 425 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 501 (638)
++.++|.++|+...+. ++.....+...|.-.++++-|+.+++++.+.| .-++..|..+.-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888877643 55566666677888899999999999999999 5678889999999999999999999999
Q ss_pred HHhhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 502 KMVHGLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 502 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
+.... --.|+ ...|..+.......|++.-|.+.|+-. ...| ....++.|.-.-.+.|++++|..+++.+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88763 33354 367888888889999999999999887 3344 4678888888888999999999999999999998
Q ss_pred CcchHHHH
Q 006627 578 NYGYNVLM 585 (638)
Q Consensus 578 ~~~~~~~l 585 (638)
-.+....+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 65554444
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=4.5e-07 Score=82.01 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=139.0
Q ss_pred CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCC-------HHHHH
Q 006627 289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHC-------IDKAF 361 (638)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~ 361 (638)
.+-+.|.+++-.+.+. -|. ....|+-.|.+.++.++|..+.+++....+.-|-.-.-.++..|+ ..-|.
T Consensus 268 rngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred eCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 3445555555444332 122 223466678899999999999999876555444333333333332 44455
Q ss_pred HHHHHHHHcCcCCChhh-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 006627 362 ELFIHMKVSKVRPNEVT-MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR 440 (638)
Q Consensus 362 ~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 440 (638)
+.|+-.-.++..-|... -.++..++.-..+++++..++..+...=...|.. --.+..+++..|++.+|+++|-.+..|
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 66655444444333322 2233444455567888888888887754334443 345788999999999999999888866
Q ss_pred ---CchhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627 441 ---DICMWN-AMMAGYGMHGCGEEALIFFVDMERSGVKPNGIT-FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515 (638)
Q Consensus 441 ---~~~~~~-~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 515 (638)
|..+|. .|.++|.+.+.++.|.+++-+ ...+.+..+ ...+..-|-+.+.+--|-+.|+.+. ...|+++.
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEn 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPEN 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCccc
Confidence 445554 467889999999998776544 332334444 4445567888999888888888885 56788877
Q ss_pred H
Q 006627 516 Y 516 (638)
Q Consensus 516 ~ 516 (638)
|
T Consensus 497 W 497 (557)
T KOG3785|consen 497 W 497 (557)
T ss_pred c
Confidence 7
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.9e-07 Score=92.51 Aligned_cols=465 Identities=11% Similarity=0.066 Sum_probs=301.2
Q ss_pred HHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 006627 81 CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVM 160 (638)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 160 (638)
+-+.++...-...++.....| ..++.++|+|...|..+++-.+ ..+++ |..-=+....-||..+++.-|.-.|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEee
Confidence 334455666666777777888 6789999999999998765332 23322 1111122333444444433222211
Q ss_pred HHhHH----CCC----------------cCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006627 161 REMRF----MDI----------------RPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYS 220 (638)
Q Consensus 161 ~~m~~----~~~----------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (638)
++=.. -.+ +.|...|..++. .+-.--+++.+..+..+.+...|+......+.++.
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 11000 000 123333333332 11122356667777777776668888888899999
Q ss_pred hcCChHHHHHHHhccC-CCCcc-----cHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhH
Q 006627 221 KCGNLAYAKQLFNRLN-QNSVV-----SWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLG 294 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 294 (638)
..+-..+-.++++++. ++++. .-|.+|-...+. +..++.+..+++..-. .|+ +...+...+-+++|
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEA 1067 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHH
Confidence 9999999999998876 33332 344555444444 3456666666654321 222 23334455667778
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 006627 295 KWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRP 374 (638)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 374 (638)
..+|+... .+....+.|+. .-+.++.|.++-++..+| ..|+.+..+-.+.|...+|++-|-+ ..
T Consensus 1068 F~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1068 FAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred HHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence 77776642 23333333333 356788888888887665 6899999999999999999987754 34
Q ss_pred ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 006627 375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGM 454 (638)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 454 (638)
|+..|.-+++.+.+.|.+++-.+++...++..-.|.. -+.|+-+|++.++..+-++++. .||......+..-|..
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhh
Confidence 6778999999999999999999999988887655554 4678999999999988777653 4666666677777778
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 006627 455 HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHE 534 (638)
Q Consensus 455 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 534 (638)
.|.++.|.-+|.. ...|..|...+...|++..|...-+++ .+..+|..+..++...+.+.-|.-
T Consensus 1207 ~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred hhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHh
Confidence 8888777766643 234677777778888888887765555 345677777777776655443321
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 535 MIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 535 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
. -+.+-.-..-+..++..|...|-+++-+.+++..+.++-.+...+..|+-+|.+- ++++-.+.++..
T Consensus 1271 C--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1271 C--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred c--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 1 0011223456677888888899999999999999888888888888888777654 344444444433
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=7.3e-10 Score=115.08 Aligned_cols=211 Identities=12% Similarity=-0.042 Sum_probs=165.7
Q ss_pred CchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh---------cCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCC
Q 006627 390 GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK---------CGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGC 457 (638)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 457 (638)
++.+.|...+++..+.. |.+...+..+..+|.. .+++++|...+++... .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999988865 4455666666655542 2447899999988773 356788888888999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 006627 458 GEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMI 536 (638)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 536 (638)
+++|...+++..+.+ +.+...+..+..++...|++++|...++++.+ ..|+. ..+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999874 44557788889999999999999999999986 34443 23334455567789999999999
Q ss_pred HhC--CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 537 KSM--PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 537 ~~~--~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+++ ...|+ +..+..+..++...|+.++|...++++....|++......++..|...|+ +|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 887 22454 45567777888899999999999999999999988888999999998884 88888887765
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=2.1e-09 Score=106.09 Aligned_cols=230 Identities=17% Similarity=0.142 Sum_probs=161.7
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHh-----C-CCCccc-HHHHHHHHHHhcCCHHHHHHHHHcCCC-------C-C
Q 006627 377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQ-----G-LEVDVI-LKTALVDMYAKCGDVNGAYRLFSEAIY-------R-D 441 (638)
Q Consensus 377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~ 441 (638)
.+...+...|...|+++.|+..++...+. | ..|... ..+.+...|...+++.+|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666777777777777777766554 1 022222 223356677777787777777766541 1 1
Q ss_pred ---chhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcC--C
Q 006627 442 ---ICMWNAMMAGYGMHGCGEEALIFFVDMER-----SGV-KPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLG--L 509 (638)
Q Consensus 442 ---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 509 (638)
..+++.|...|.+.|++++|..++++..+ .|. .|.. ..+..+...|...+++++|..++++..+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 24666677778888887777777666543 121 2333 3467777889999999999999988766432 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhcc-
Q 006627 510 VPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEI- 574 (638)
Q Consensus 510 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 574 (638)
.++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|.++|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 367889999999999999999999887 11232 456678888899999999999999988763
Q ss_pred ---CCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 575 ---EPQ---NYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 575 ---~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
.|+ -...|..|+.+|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 44578899999999999999999988875
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.9e-08 Score=91.38 Aligned_cols=392 Identities=9% Similarity=-0.023 Sum_probs=249.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccCCCCc-ccHHHHHHHHHhCC-Ch-HHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627 208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSV-VSWTVMISGYIRCN-EI-NEGVRLFAEMIEENVFPSEITILSLIIE 284 (638)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g-~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 284 (638)
+.......+.+|...++-+.|......++..-. ..-|.|+.-+.+.| +. +.+...-.-+++. +.-.. .|.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~----~i~~ 169 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQ----VIEA 169 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHH----HHHH
Confidence 556667788999999999999999888876333 33344444333333 22 2222221112211 00000 0000
Q ss_pred hcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHH--HhcCChHHHHHHHhcCC-----CCCchhHHHHHHHHHhcCCH
Q 006627 285 CGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMY--GKCREIRSARTLFDGMK-----SKDVMIWNAVISAYAQAHCI 357 (638)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~ 357 (638)
..+.+ +..+..--..|....++|.......-+.++ +..++-..|...+-.+. ..|+.....+...+...|+.
T Consensus 170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 00000 000011111122222333333333333333 33444444444433222 23777888999999999999
Q ss_pred HHHHHHHHHHHHcCcCCChhhHH-HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627 358 DKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSE 436 (638)
Q Consensus 358 ~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (638)
++|...|++.+.. .|+..+-. ...-.+.+.|+.+....+...+.... +.+...+..-........+++.|+.+-++
T Consensus 249 ~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999987643 34433211 11223456788888888877776543 23333333334445566889999999988
Q ss_pred CCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh
Q 006627 437 AIYRDIC---MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI 513 (638)
Q Consensus 437 ~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 513 (638)
.+..++. .+-.-...+...+++++|.-.|+...... +-+...|.-|+.+|...|+..+|.-.-+...+ -++.+.
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA 402 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSA 402 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcch
Confidence 7755544 44333467888999999999999988652 34668999999999999999999988887766 344455
Q ss_pred hHHHHHH-H-HHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 514 EHYGCMV-D-LLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 514 ~~~~~l~-~-~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
.+...+. . ++-...--++|..++++. ...|+ ......+...+...|..++++.++++.+...|+ ...+..|++++
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIM 481 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHH
Confidence 5554442 2 222333458899999887 67887 567778888899999999999999999999998 47899999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCcCC
Q 006627 590 AVANRWNDVAGVRRVMKEIRVKKE 613 (638)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~~~~ 613 (638)
...+.+.+|.+.|.......+...
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccch
Confidence 999999999999988876655443
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=2.1e-09 Score=99.51 Aligned_cols=199 Identities=10% Similarity=0.005 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627 342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMY 421 (638)
Q Consensus 342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (638)
..+..+...+...|++++|.+.+++..... +.+...+..+...+...|+++.|...++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555666666666666666666655432 2223344444555555566666666655555543 23333444444444
Q ss_pred HhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHH
Q 006627 422 AKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVF 500 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 500 (638)
. ..|++++|...+++.......| ....+..+..++...|++++|...+
T Consensus 110 ~-------------------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 110 C-------------------------------QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred H-------------------------------HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4 4455555555555544321111 2234444555556666666666666
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
++..+ ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus 159 ~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66654 22223445555666666666666666666655 2222 34444455555556666666666666555443
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.1e-07 Score=95.55 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=42.8
Q ss_pred hcCC-hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 006627 557 LHKN-PSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRV 604 (638)
Q Consensus 557 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (638)
...+ .++|.++++-+.+..|++..+|.+--.+|.+.|++--|++.+.+
T Consensus 468 ~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 468 KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 4443 68899999999999999999999999999999999999988764
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.6e-09 Score=102.83 Aligned_cols=216 Identities=11% Similarity=-0.071 Sum_probs=118.0
Q ss_pred hcCCHHHHHHHHHHHHHcC-cCCC--hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627 353 QAHCIDKAFELFIHMKVSK-VRPN--EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG 429 (638)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 429 (638)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455666777776666432 2222 2334455556667777777777777776654 4556667777777777777777
Q ss_pred HHHHHHcCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhh
Q 006627 430 AYRLFSEAI--YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHG 506 (638)
Q Consensus 430 A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 506 (638)
|...|++.. .| +...|..+..++...|++++|++.+++..+. .|+..........+...+++++|...+++...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 777776654 22 3455666666666677777777777776654 34332111222223345567777777755443
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC----CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 507 LGLVPKIEHYGCMVDLLGRAGLLDE--AHEMIKSM-PL----RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 507 ~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
...|+...+ .+.. ...|+..+ +.+.+.+. .. .| ...+|..+...+...|++++|+..|+++++.+|
T Consensus 194 -~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 -KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 223332211 2222 22333322 22222211 11 11 234566666666677777777777777777665
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.5e-11 Score=79.95 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=48.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcc
Q 006627 135 RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFAD 184 (638)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 184 (638)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=5.6e-07 Score=89.02 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=169.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCch--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchH
Q 006627 316 LVDMYGKCREIRSARTLFDGMKSKDVM--IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALE 393 (638)
Q Consensus 316 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 393 (638)
.+.+-.....|.+|+.+++.+.+.++. -|..+...|...|+++.|.++|.+.- .++-.|..|.+.|.+.
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 344556678888999999888766443 46777889999999999999987532 3455678899999999
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006627 394 MGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGV 473 (638)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 473 (638)
.|.++-.+.. |.......|-+-..-+-..|++.+|.++|-.+..|+. .|..|-+.|..+..+++.++-
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~----- 876 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH----- 876 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----
Confidence 9888766553 3244556666666777888999999999988887764 466788888888888877653
Q ss_pred CCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHH
Q 006627 474 KPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGAL 551 (638)
Q Consensus 474 ~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 551 (638)
.|+. .|...+..-+...|+...|...|-+.-. |.+-++.|..++.+++|.++-+.-+ ..+..-...+
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~f 945 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAF 945 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHH
Confidence 2333 5667777778888888888887766532 4445556666677777766655442 1111111111
Q ss_pred HHH------------------------HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 552 LAA------------------------SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 552 ~~~------------------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
+++ ....+.++-|..+.+-+.+ -..+.++..++.-+-..|++++|-+.+-...
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 111 1222333333333332222 2235677788888889999999976655443
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3e-11 Score=79.56 Aligned_cols=50 Identities=30% Similarity=0.471 Sum_probs=46.1
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc
Q 006627 238 NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGF 287 (638)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 287 (638)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=9.6e-07 Score=87.46 Aligned_cols=312 Identities=15% Similarity=0.144 Sum_probs=148.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChH
Q 006627 248 SGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIR 327 (638)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (638)
.+......|.+|+.+++.+++.. .-..-|..+...|+..|+++.|+++|-+. ..++-.+.+|.+.|+|.
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 34445566666666666665542 22234555666666666666666666432 22345566666777777
Q ss_pred HHHHHHhcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627 328 SARTLFDGMKSK--DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ 405 (638)
Q Consensus 328 ~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (638)
.|.++-.+...| ....|-+-..-+-..|++.+|.+++-... .|+ ..|..|-+.|..+...++...-..
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~- 878 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG- 878 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh-
Confidence 776666665544 22334444444555666666665553321 233 234455556655555555443211
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627 406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN 485 (638)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 485 (638)
..-..+...+..-|...|++..|...|-+.. -|.+-+..|...+-+++|.++-+ ..| -.|..-...+++
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayriak---teg-g~n~~k~v~flw 947 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYRIAK---TEG-GANAEKHVAFLW 947 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHHHHh---ccc-cccHHHHHHHHH
Confidence 1112333445555666666666665553321 23334444444455555544432 122 233333333333
Q ss_pred HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHH
Q 006627 486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 565 (638)
+-+-.| +.|.+++++. |+ ...-++..+..+-++-|.++-+-............+.......|++++|-
T Consensus 948 aksigg--daavkllnk~----gl------l~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edas 1015 (1636)
T KOG3616|consen 948 AKSIGG--DAAVKLLNKH----GL------LEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDAS 1015 (1636)
T ss_pred HHhhCc--HHHHHHHHhh----hh------HHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhh
Confidence 322222 3333333332 11 11122333344444444444332211111122223333344556666666
Q ss_pred HHHHHHhccCCCCcch------------------HHHHHHHHHhcCCHHHHHHHHH
Q 006627 566 IAATQILEIEPQNYGY------------------NVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 566 ~~~~~~~~~~p~~~~~------------------~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
+.|-++++++.-|..+ -......+.+.++|..|.++-+
T Consensus 1016 khyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae 1071 (1636)
T KOG3616|consen 1016 KHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAE 1071 (1636)
T ss_pred HhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHH
Confidence 6666666554322110 0122445777888888887755
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.6e-07 Score=92.50 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=174.3
Q ss_pred CCc--chHhhhhHHH--hhhhcCChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHHC--------CCCCC
Q 006627 6 GFL--NLEQTRQCHA--HIIKTHFKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRKN--------GSEVD 70 (638)
Q Consensus 6 ~~~--~~~~~~~l~~--~~~~~g~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~ 70 (638)
|++ |..+=.++++ .|.--|+.+.|.+-.+-+ ..|..|.+.|++.++.+-|.-.+..|... ..+.+
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 445 6666666766 567789999998887777 89999999999999999888887777431 11111
Q ss_pred cccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCC-CcchHHHHHHHHHh
Q 006627 71 NFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR-DVVSWSTMIRGYHR 149 (638)
Q Consensus 71 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~ 149 (638)
..+=..+.......|..++|..++..-.+.+ .|-..|...|.+++|.++-+.-.+- =-.||......+-.
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1332333333456788888888888876643 4555677788999998887654331 23356666666777
Q ss_pred CCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHH
Q 006627 150 GGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAK 229 (638)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 229 (638)
.++.+.|++.|++.-. |- .++++.+. .++...+
T Consensus 871 r~Di~~AleyyEK~~~----ha--------------------fev~rmL~-----------------------e~p~~~e 903 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV----HA--------------------FEVFRMLK-----------------------EYPKQIE 903 (1416)
T ss_pred hccHHHHHHHHHhcCC----hH--------------------HHHHHHHH-----------------------hChHHHH
Confidence 8888889888886421 11 11111111 1122233
Q ss_pred HHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCc
Q 006627 230 QLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFS 309 (638)
Q Consensus 230 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (638)
...+.+..+.. |.--...+-..|+.+.|+.+|...++ |-++++..|-.|+.++|-++-++ .-|
T Consensus 904 ~Yv~~~~d~~L--~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd 966 (1416)
T KOG3617|consen 904 QYVRRKRDESL--YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGD 966 (1416)
T ss_pred HHHHhccchHH--HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------ccc
Confidence 33344443322 22233334456888888888877654 45566777778888887777654 235
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHH
Q 006627 310 LAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDK 359 (638)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 359 (638)
....-.|.+.|-..|++.+|..+|.+. .++...|+.| +.+++++
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA-----qafsnAIRlc-KEnd~~d 1010 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRA-----QAFSNAIRLC-KENDMKD 1010 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHH-HhcCHHH
Confidence 555667888888999999999888764 3455555543 4444443
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.4e-06 Score=84.57 Aligned_cols=117 Identities=16% Similarity=0.013 Sum_probs=72.0
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHH--HHHhh--hcC
Q 006627 44 TSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNA--LIQMY--SEC 119 (638)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~--~~~ 119 (638)
.-+...+++++|.....++...+ +-|...+..-+-++.+.+.++.|..+.+. .+. ..+++. +=.+| -+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 44556677777777777777665 44555666666777777777777744332 221 111111 23333 356
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCC
Q 006627 120 GSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMD 167 (638)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 167 (638)
+..++|...++-..+.+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 777777777774444444455555667777888888888888876654
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=2.3e-08 Score=85.13 Aligned_cols=192 Identities=13% Similarity=-0.017 Sum_probs=98.4
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHH
Q 006627 384 SLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEE 460 (638)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 460 (638)
-.|...|+...|..-+++..+.. |.+..++..+...|.+.|+.+.|.+.|++.. ..+-...|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 34555555555555555555544 4444555555555555555555555555433 2233444555555555555555
Q ss_pred HHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 461 ALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 461 A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
|...|++....-.-|.. .||..+..+..+.|+.+.|.++|++..+ ..+........+.+.....|++..|..++++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 55555555543222222 3555555555555666666665555554 22222344445555555555555555555554
Q ss_pred --CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 540 --PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 540 --~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
...++...+...+......||.+.+-+.-.++....|..
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 223444454445555555555555555555555555554
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=3e-08 Score=94.12 Aligned_cols=215 Identities=13% Similarity=-0.006 Sum_probs=146.1
Q ss_pred CchHHHHHHHHHHHHhC-CCCc--ccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHH
Q 006627 390 GALEMGKWLHTYIEKQG-LEVD--VILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALI 463 (638)
Q Consensus 390 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 463 (638)
+..+.+..-+.++.... ..|+ ...+..+...|...|+.++|...|++.. ..+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555666666666432 1222 3557777788889999999999888766 2356788888899999999999999
Q ss_pred HHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 006627 464 FFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--P 540 (638)
Q Consensus 464 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 540 (638)
.|++..+. .| +..++..+..++...|++++|.+.+++..+. .|+..............++.++|...+.+. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99998875 45 4567788888888899999999999998753 343322222222345567899999998664 2
Q ss_pred CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627 541 LRPNMIVWGALLAASKLHKNPSMGEIAATQIL-------EIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE 613 (638)
Q Consensus 541 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (638)
..|+...+ .......|+...+ ..++.+. ++.|+.+.+|..+|.+|.+.|++++|+.+|++..+.++...
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23332222 2222334554333 2333333 45666778899999999999999999999998877665433
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.1e-07 Score=83.74 Aligned_cols=384 Identities=12% Similarity=0.000 Sum_probs=217.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHH-HHHhccc
Q 006627 213 TALIDMYSKCGNLAYAKQLFNRLNQN---SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSL-IIECGFV 288 (638)
Q Consensus 213 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~ 288 (638)
++.+..+.+..++++|++++..-.+. +....+.+..+|....++..|-+.++++-.. .|...-|... ...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444445555666666665554432 3344555666666666666666666666543 3444333221 1223344
Q ss_pred CChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 289 GGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS-KDVMIWNAVISAYAQAHCIDKAFELFIHM 367 (638)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 367 (638)
+.+..|.++...|.+.. ..-..+...-....-..+++..+..++++.+. .+..+.+.......+.|+++.|.+-|+..
T Consensus 92 ~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 45555555555443320 00000011111122346778888888888874 45556666666677888888888888887
Q ss_pred HHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-------------cc---------------cHHHHHHH
Q 006627 368 KVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV-------------DV---------------ILKTALVD 419 (638)
Q Consensus 368 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~~ 419 (638)
.+.|--.....|+..+. ..+.++.+.|.+...++.++|+.. |. ..++.-..
T Consensus 171 lqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 66543344556665554 345678888888888887766432 11 11222233
Q ss_pred HHHhcCCHHHHHHHHHcCCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627 420 MYAKCGDVNGAYRLFSEAIYR-----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT 494 (638)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 494 (638)
.+.+.++++.|.+-+-.|+.. |++|...+.-.- ..+++.+..+-++-+.+.. +-...||..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHh
Confidence 456789999999999998843 666665543322 2345556666666666543 334589999999999999999
Q ss_pred HHHHHHHHHhhhcCCC-CChhHHHHHHHHH-HhcCChHHHHHHHHhCCCCCCHhhHHHHHHHH--hhcCC---hHHHHHH
Q 006627 495 EGKSVFDKMVHGLGLV-PKIEHYGCMVDLL-GRAGLLDEAHEMIKSMPLRPNMIVWGALLAAS--KLHKN---PSMGEIA 567 (638)
Q Consensus 495 ~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~--~~~~~---~~~A~~~ 567 (638)
.|-.++-+-... ... .+...|+ |++++ ...-..++|.+-++.+...-........+... ...++ ...+++-
T Consensus 328 lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~ 405 (459)
T KOG4340|consen 328 LAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE 405 (459)
T ss_pred HHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 998887654321 111 2333444 33444 34457777777666541000001111111111 11222 2334445
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+++.+++. ..+....+++|++..+|..+++.|+.-.+
T Consensus 406 Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 406 YDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 55555532 23567789999999999999999996544
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=3.5e-08 Score=98.90 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-------------CCCCChh--HHHHHHHHHH
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-------------GLVPKIE--HYGCMVDLLG 524 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~ 524 (638)
.+..++..+...|+|+ +|..+-..|......+-..+++....... .-+|+.. ++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4555667777778654 34444444555555555555555543311 1133432 3456678888
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627 525 RAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
..|++++|+++++++ ...|. +..|..-...+.+.|++++|...++.+.++++.|.....-.+..+.+.|+.++|.+.+
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999987 56675 6777888888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 006627 603 RVMKEIRV 610 (638)
Q Consensus 603 ~~~~~~~~ 610 (638)
...-+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98866554
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=8.3e-08 Score=95.03 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=141.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCC----------Cch-hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CcCCCh-
Q 006627 312 MANALVDMYGKCREIRSARTLFDGMKSK----------DVM-IWNAVISAYAQAHCIDKAFELFIHMKVS---KVRPNE- 376 (638)
Q Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~- 376 (638)
+...+...|...|+++.|..+++...+. .+. ..+.+...|...+++++|..+|+++... ..-++.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555555555555555555443321 111 2234566778888888888888886432 111222
Q ss_pred ---hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCc-hhHHHHH
Q 006627 377 ---VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDI-CMWNAMM 449 (638)
Q Consensus 377 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~-~~~~~l~ 449 (638)
.++..|-.+|.+.|++++|...++...+.- ++.. .+.+ ..++.+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~----------------------------~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY----------------------------EKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH----------------------------HHhhccChHHHHHHHHHHH
Confidence 233344445666666666666555443310 0000 0011 1223344
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CC--CCC-hhHH
Q 006627 450 AGYGMHGCGEEALIFFVDMERS---GVKPN----GITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GL--VPK-IEHY 516 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~--~p~-~~~~ 516 (638)
..++..+++++|..++++..+. -+.++ ..++..+...|...|++++|.+++++++... +. .+. ...+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 4455555555555555543321 11222 2578899999999999999999999887642 11 222 3567
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 517 GCMVDLLGRAGLLDEAHEMIKSM--------PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
+.+...|.+.++..+|.++|.+. +..|+ ..+|..|..+|...|+++.|.++.+++..
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 78888889999999888888776 23454 46788999999999999999999998874
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=3e-07 Score=82.79 Aligned_cols=293 Identities=12% Similarity=0.078 Sum_probs=174.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-HHHHHHhcc
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVI---SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEA 389 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~ 389 (638)
.-+...+...|++..|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+..+ ++||-..-. .--..+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 34555566667777777777777766666655543 356666666666666666554 355543222 112345567
Q ss_pred CchHHHHHHHHHHHHhCCCCc--ccHH------------HHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHH
Q 006627 390 GALEMGKWLHTYIEKQGLEVD--VILK------------TALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGY 452 (638)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 452 (638)
|.++.|..=|+.+.+..-... ...+ ...+..+...|+...|+.....+. ..|...+..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 777777777777766531110 1111 112233444567777776666554 33666666667777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh----HHHHH---------
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE----HYGCM--------- 519 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l--------- 519 (638)
...|.+..|+.=++...+.. ..+..++..+-..+-..|+.+.++...++.. .+.||-. .|..|
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 77777777776666655442 3344555566666667777777777666665 4455532 12211
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627 520 VDLLGRAGLLDEAHEMIKSM-PLRPN-----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN 593 (638)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 593 (638)
+....+.+++.++++--++. ...|. ...+..+...+...+++.+|++...++++.+|+|..++..-+.+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 11234456666666665554 33443 1223333444556677888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHhhcCCcC
Q 006627 594 RWNDVAGVRRVMKEIRVKK 612 (638)
Q Consensus 594 ~~~~A~~~~~~~~~~~~~~ 612 (638)
+|++|++-|++..+.+...
T Consensus 356 ~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 8888888888776655443
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-06 Score=84.07 Aligned_cols=237 Identities=16% Similarity=0.057 Sum_probs=151.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-HHHHHHhccCchHHHHHHHHHHHHhCCCC------cccHHHH
Q 006627 344 WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-GLLSLCTEAGALEMGKWLHTYIEKQGLEV------DVILKTA 416 (638)
Q Consensus 344 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ 416 (638)
...+.+...+..+++.|++-+....... ...+|. ..-.++...|.............+.|... =...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666777778888888887766543 333333 44456666666666665555554444211 0111222
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHH
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTE 495 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 495 (638)
+..+|.+.++++.+...|.+...+... -....+....++++...+...-. .|.. .-...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHH
Confidence 344666677888888888764422111 11122233445555555544332 3433 122233566788899999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 496 GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 496 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
|...|.++++. .+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++....+++.|...|+++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998873 3556788888888999999999998887766 45554 45565556666677789999999999999
Q ss_pred cCCCCcchHHHHHHHHHhc
Q 006627 574 IEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 574 ~~p~~~~~~~~l~~~~~~~ 592 (638)
++|++..+...+..+....
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999888888888887764
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=9.4e-09 Score=98.99 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=152.7
Q ss_pred hccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHH
Q 006627 387 TEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALI 463 (638)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 463 (638)
.+.|++..|.-.|+...+.+ |-+...|..|.......++-..|+..+++..+- |......|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34555666666666665554 555566666666666666666666666554422 34455555566666666666666
Q ss_pred HHHHHHHcCCCCcHHHHHHHH-----------HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627 464 FFVDMERSGVKPNGITFIGLL-----------NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 532 (638)
.++.-+... +| |..+. ..+.....+....++|-++....+.++|+.+...|...|.-.|++++|
T Consensus 375 ~L~~Wi~~~-p~----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK-PK----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC-cc----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 666654432 11 00000 112222334455666666665556668889999999999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 533 HEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 533 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+..|+.+ ..+| |...|+.|..+.....+.++|+..|++++++.|.-..+.+.||-.|...|.|++|.+.|=....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999988 6677 5789999999999999999999999999999999999999999999999999999998766654
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=6.3e-09 Score=97.04 Aligned_cols=251 Identities=12% Similarity=0.051 Sum_probs=143.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627 317 VDMYGKCREIRSARTLFDGMKSK----DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392 (638)
Q Consensus 317 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (638)
++.+.-.|.+..++.-.+ .... +.....-+.+++...|+++.++. ++.... .|.......+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888876554 2222 22234456677888888775543 333322 66666665555555544444
Q ss_pred HHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006627 393 EMGKWLHTYIEKQGLE-VDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERS 471 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 471 (638)
+.+..-++........ .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444444333222222 23333333345566678888888777665 45566666777788888888888888887753
Q ss_pred CCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 006627 472 GVKPNGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NM 545 (638)
Q Consensus 472 ~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 545 (638)
..| .+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| ++
T Consensus 161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 233 334444444322 2357778888888765 45566777777777777777777777777665 3333 35
Q ss_pred hhHHHHHHHHhhcCCh-HHHHHHHHHHhccCCCCc
Q 006627 546 IVWGALLAASKLHKNP-SMGEIAATQILEIEPQNY 579 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 579 (638)
.++..++......|+. +.+.+.++++....|+++
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 5555555555556655 566677777777777754
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=1.1e-06 Score=87.99 Aligned_cols=457 Identities=15% Similarity=0.074 Sum_probs=244.9
Q ss_pred hCCCchhHHHH----HHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChh
Q 006627 48 KNNKPSSALNI----YAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLV 123 (638)
Q Consensus 48 ~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 123 (638)
...+.+++.-. +.++....+..|...|..+--++...|+++.+.+.|++....- -.....|+.+-..|.-+|.-.
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDS 374 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccch
Confidence 34444454432 2333334566788888888888899999999999999987654 345677888888899999999
Q ss_pred HHHHHhccCCC----CCcc-hHHHHHHHHHh-CCCchHHHHHHHHhHHC------CCcCCHhhHHHHHHHhc-cc-----
Q 006627 124 SARYLFDEMPN----RDVV-SWSTMIRGYHR-GGLPEEALEVMREMRFM------DIRPSEVAMISMVSLFA-DV----- 185 (638)
Q Consensus 124 ~a~~~~~~~~~----~~~~-~~~~li~~~~~-~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~-~~----- 185 (638)
.|..++++-.. |+.. .+-..-..|.+ -+..++++++-.+.... .+.|-...+..+--.+. +.
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 99999987543 3323 33333333433 46677777776666541 12333222222221111 11
Q ss_pred ---CchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC----CCcccHHHHHHHHHhCCChHH
Q 006627 186 ---ADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ----NSVVSWTVMISGYIRCNEINE 258 (638)
Q Consensus 186 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~ 258 (638)
....++.+.++..++.++. |+.+.-.+.--|+..++++.|.+..++... .+...|..+.-.+...+++.+
T Consensus 455 eR~~~h~kslqale~av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 1122334444444444443 233333333344455555555555444332 233445555555555555555
Q ss_pred HHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC
Q 006627 259 GVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS 338 (638)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 338 (638)
|+.+.+..... .|... .....-+..-...++.+++......+..
T Consensus 532 Al~vvd~al~E----------------------------------~~~N~--~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 532 ALDVVDAALEE----------------------------------FGDNH--VLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHHH----------------------------------hhhhh--hhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 55555544432 11100 0000011111123444444443322210
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCccc-HHH
Q 006627 339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVS--KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVI-LKT 415 (638)
Q Consensus 339 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 415 (638)
.|... ...-..++-...+++...+.-. ...-...++..+..-....+....-.. .+.+..+.|.+. ++.
T Consensus 576 ----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~---~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 576 ----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL---KLPSSTVLPGPDSLWY 647 (799)
T ss_pred ----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc---ccCcccccCCCCchHH
Confidence 00000 0001111111222222221110 001111222222211110000000000 011111112111 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 006627 416 ALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTE 495 (638)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 495 (638)
.+ ...|......+...++.++|...+.+..... +-....|......+...|.+.+
T Consensus 648 ~~------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 648 LL------------------------QKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred HH------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHH
Confidence 11 2345556667777888888888887776542 3455677777788888999999
Q ss_pred HHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHH
Q 006627 496 GKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHE--MIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQ 570 (638)
Q Consensus 496 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 570 (638)
|.+.|.... .+.| ++.+..++..++.+.|+..-|.. ++..+ ...| +...|..+...+...|+.++|...|+.
T Consensus 703 A~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999998886 4455 45788899999999998877777 77777 6666 589999999999999999999999999
Q ss_pred HhccCCCCcc
Q 006627 571 ILEIEPQNYG 580 (638)
Q Consensus 571 ~~~~~p~~~~ 580 (638)
+.++++.+|.
T Consensus 780 a~qLe~S~PV 789 (799)
T KOG4162|consen 780 ALQLEESNPV 789 (799)
T ss_pred HHhhccCCCc
Confidence 9999988764
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=1.3e-05 Score=82.62 Aligned_cols=570 Identities=11% Similarity=-0.033 Sum_probs=286.5
Q ss_pred hHhhhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc--ccHHHHHH
Q 006627 10 LEQTRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDN--FTIPTILK 79 (638)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~ 79 (638)
...|..|-..|+...+...|...|++. .++......|++..+++.|..+.-..-+.. +.-. ..|...--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 345667777787777888888888877 888889999999999999988844333321 1111 12333333
Q ss_pred HHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcc-hHHHH--HHHHHhCCCchHH
Q 006627 80 ACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVV-SWSTM--IRGYHRGGLPEEA 156 (638)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a 156 (638)
.+...++...+..-|+...+.. |.|...|..+..+|.++|++..|.++|.+...-++. .|... ...-+-.|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 3556677778888888777665 667888999999999999999999999877653332 22222 2223456777777
Q ss_pred HHHHHHhHHC------CCcCCHhhHHHHHHHhcccCch-------HHHHHHHHHHHHhccCCCCchhHHHHHHHH-----
Q 006627 157 LEVMREMRFM------DIRPSEVAMISMVSLFADVADV-------DLGKAIHACVVRNCKDEKLGVAIATALIDM----- 218 (638)
Q Consensus 157 ~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~----- 218 (638)
+..+...... +..--..++......+...|-. +.+.+.+.......... +...|..+-++
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~--~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS--DRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHhHHHHHHH
Confidence 7777665432 1111122333322222222211 22233332222222111 11111111111
Q ss_pred --------------HHh----cCCh---H---HHHHHHhccCC--CCcccHHHHHHHHHh----C----CChHHHHHHHH
Q 006627 219 --------------YSK----CGNL---A---YAKQLFNRLNQ--NSVVSWTVMISGYIR----C----NEINEGVRLFA 264 (638)
Q Consensus 219 --------------~~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----~----g~~~~a~~~~~ 264 (638)
+.. .+.. + -+.+.+-.-.. .+..+|..++..|.+ . .+...|+..+.
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 111 1111 0 00000000000 123344444444433 1 12235566666
Q ss_pred HHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC---Cc
Q 006627 265 EMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK---DV 341 (638)
Q Consensus 265 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 341 (638)
+..+. ..+...+-..+......|++.-+.-.|-.-.... +....+|..+.-.+.+..+++-|...|.....- |.
T Consensus 808 kaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 808 KAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred HHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 55543 3344444444444455566666555544333222 445667777777788889999999998887653 44
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH--H--HcCcCCChhhHHHHHHHHhccCchHHHHHH----------HHHHHHhCC
Q 006627 342 MIWNAVISAYAQAHCIDKAFELFIHM--K--VSKVRPNEVTMVGLLSLCTEAGALEMGKWL----------HTYIEKQGL 407 (638)
Q Consensus 342 ~~~~~li~~~~~~~~~~~a~~~~~~m--~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----------~~~~~~~~~ 407 (638)
..|-.........|+.-+...+|..- . ..|-.|+-.-+.........+|+.+.-+.. ++.... +.
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~ 963 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GH 963 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cC
Confidence 45544444445566666666666551 1 122233333222222233344443332222 222222 33
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHcCC-----CCCchhHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 006627 408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAI-----YRDICMWNA----MMAGYGMHGCGEEALIFFVDMERSGVKPNGI 478 (638)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 478 (638)
+.+...|.+......+.+.+.+|.++..+.. +-+...|+. +.+.++..|.++.|..-+...-. ..+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEd 1040 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDED 1040 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHH
Confidence 5566677777666666677766666655433 223334442 22233334444433322211000 00111
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHH---
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALL--- 552 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~--- 552 (638)
...+-+. ..-.++++++.+.|+++..-..-..+ +.....+..+....+..+.|...+-+. ..+|+..+...+.
T Consensus 1041 i~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1041 IRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred HhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 1111111 13345566666666665542111222 123334444445555555555544333 1122211111111
Q ss_pred ----------------------------------HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 553 ----------------------------------AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 553 ----------------------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
..+.+.|+-....+.++++...+|.++..|..|..-|..
T Consensus 1120 ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1120 ILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 124566777778888888889999999999888754443
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=4.4e-06 Score=85.97 Aligned_cols=542 Identities=12% Similarity=-0.008 Sum_probs=267.9
Q ss_pred CchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhc
Q 006627 51 KPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFD 130 (638)
Q Consensus 51 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 130 (638)
+...|+..|-+..+..+ .=...|..|-..|....+...|...|....+.+ ..+........+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36666666666655431 122357777777776667777888888777765 5566777777788888888888777743
Q ss_pred cCCCCC-----cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCC
Q 006627 131 EMPNRD-----VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDE 205 (638)
Q Consensus 131 ~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 205 (638)
...+.+ ...|-...-.|.+.++..+|..-|+...+.. +-|...|..+..+|.+.|....|.++|.......+..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 322211 1122223333445555555655555555432 2233455555555555555555555555544443331
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhccCC---------CC-cccHHHHHHHHHhCCChHHHHHHHHHHHH-------
Q 006627 206 KLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---------NS-VVSWTVMISGYIRCNEINEGVRLFAEMIE------- 268 (638)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~------- 268 (638)
....--....-+..|.+.+|...++.+.. .+ ..++-.+...+.-.|-..++.+.+++-.+
T Consensus 630 ---~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 630 ---KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred ---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 11111122223344555555554444331 00 01111111112222222222222222111
Q ss_pred cC--------------------c---cCChHhHHHHHHHhcccCCh---h---hHHHHHHHHHHhcCCCchhhHHHHHHH
Q 006627 269 EN--------------------V---FPSEITILSLIIECGFVGGL---Q---LGKWLHAYILRNGFEFSLAMANALVDM 319 (638)
Q Consensus 269 ~~--------------------~---~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (638)
.. + .|+......+..-....+.. + .+-+.+- ....+..+...+..|...
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHH
Confidence 00 0 12222222222211112211 1 0000000 000111122222223222
Q ss_pred HHh----cC----ChHHHHHHHhcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627 320 YGK----CR----EIRSARTLFDGMK---SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE 388 (638)
Q Consensus 320 ~~~----~~----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (638)
|.+ .| +...|...+.... ..+...||.|.-. ...|++.-+.--|-+-... -+....+|..+--.+..
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence 222 11 1223444444433 2355566655443 4445555555544443322 13345566666667778
Q ss_pred cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCCchhHHHHHHHHHhcCChHH
Q 006627 389 AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--------YRDICMWNAMMAGYGMHGCGEE 460 (638)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 460 (638)
..+++.|...|...+... |.+...+-.........|+.-++..+|..-. .++..-|-........+|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 888888888888887654 4455555444444556677777777775411 2233333333333344555444
Q ss_pred HHHHH----------HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH----HHHHHHHhc
Q 006627 461 ALIFF----------VDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG----CMVDLLGRA 526 (638)
Q Consensus 461 A~~~~----------~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~ 526 (638)
-+... ++... +.+.....|........+.+.+..|.+...++..-...+-+...|+ .+.+.++..
T Consensus 942 ~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 33332 33332 2233446777777777777778777777766543222233334444 344566777
Q ss_pred CChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCHHHHHHHHH
Q 006627 527 GLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG---YNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 527 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
|.++.|..-+.......+..+...-+.. +-.++++++...|++++.+--.+.. ....++.+....+..+.|...+=
T Consensus 1021 gefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLf 1099 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLF 1099 (1238)
T ss_pred cchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHH
Confidence 8888887777665444444333332222 4467899999999999886554443 34455566667777777777544
Q ss_pred HH
Q 006627 604 VM 605 (638)
Q Consensus 604 ~~ 605 (638)
+.
T Consensus 1100 e~ 1101 (1238)
T KOG1127|consen 1100 EV 1101 (1238)
T ss_pred HH
Confidence 33
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.4e-05 Score=77.93 Aligned_cols=197 Identities=15% Similarity=0.040 Sum_probs=111.7
Q ss_pred chHhhhhHHHhhhhcCChhHHHHhhhhh---h-------------cHHHHHHHH-HhCCCchhHHHHHHHHHHCCCCCCc
Q 006627 9 NLEQTRQCHAHIIKTHFKFSYTNIINPL---T-------------RYNSLVTSY-IKNNKPSSALNIYAFMRKNGSEVDN 71 (638)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-------------~~~~ll~~~-~~~~~~~~a~~~~~~m~~~~~~~~~ 71 (638)
+..+|..+.++|.+..+++.|.-.+-.| + .-..-+.++ ..-|..++|..+|.+..+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 5678899999999999999998888777 1 111112222 35678888888888887643
Q ss_pred ccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCC----------------
Q 006627 72 FTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR---------------- 135 (638)
Q Consensus 72 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------- 135 (638)
.+=+.|...|.+++|.++-+.--+. .. ..+|......+-..+|.+.|++.|++...+
T Consensus 831 ----LlNKlyQs~g~w~eA~eiAE~~DRi--HL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 831 ----LLNKLYQSQGMWSEAFEIAETKDRI--HL-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ----HHHHHHHhcccHHHHHHHHhhccce--eh-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 3334566778898888876653222 22 234444555566677888888888765432
Q ss_pred -------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCc
Q 006627 136 -------DVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLG 208 (638)
Q Consensus 136 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 208 (638)
|...|..-...+-..|+.+.|+.+|...+. |-++++..|-.|+.++|.++-+..- |
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg--------d 966 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG--------D 966 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc--------c
Confidence 233334344444444555555555544332 3344444444555555544443321 2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhc
Q 006627 209 VAIATALIDMYSKCGNLAYAKQLFNR 234 (638)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 234 (638)
....-.|.+.|-..|++.+|..+|.+
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33333444444444555554444433
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=6.7e-08 Score=85.12 Aligned_cols=123 Identities=8% Similarity=0.053 Sum_probs=99.8
Q ss_pred cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH-hhcCC--hHHH
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS-KLHKN--PSMG 564 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~A 564 (638)
.++.+++...++...+ .-+.+...|..+...|...|++++|...++++ ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5667777777777775 45667788888888898999999999998887 5556 566777777653 56676 5999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCC
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEP 614 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 614 (638)
.++++++++.+|+++.++..++..+...|++++|+..|+++.+..++.++
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999999999999877665444
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=3.4e-08 Score=92.21 Aligned_cols=246 Identities=9% Similarity=-0.053 Sum_probs=149.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627 349 SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN 428 (638)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 428 (638)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+ +.++.... +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556778887776555 22211111223444556777777776643 33443333 566666655555554445556
Q ss_pred HHHHHHHcCC-CC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627 429 GAYRLFSEAI-YR----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 429 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 503 (638)
.+..-+++.. .+ +..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665444 22 1112222223455668888888877542 44566677778888888888888888888
Q ss_pred hhhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 504 VHGLGLVPKIEHYGCMVDLLG----RAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
.+ ...|. +...+..++. -.+++.+|..+|+++ ...+++.+.+.+..++...|++++|...++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 64 33333 3333433332 234688888888888 34567777777888888888888888888888888888
Q ss_pred CcchHHHHHHHHHhcCCH-HHHHHHHHHHhhcC
Q 006627 578 NYGYNVLMSNIYAVANRW-NDVAGVRRVMKEIR 609 (638)
Q Consensus 578 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 609 (638)
++.+...++.+....|+. +.+.+++.++++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 888888888888888888 66777888776543
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1e-07 Score=87.91 Aligned_cols=181 Identities=10% Similarity=-0.081 Sum_probs=114.3
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-Cc---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----H
Q 006627 409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DI---CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG----I 478 (638)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~ 478 (638)
.....+..+...+...|++++|...|+++.. | +. ..+..+..++...|++++|...++++.+.. |+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 3445556666667777777777777776552 2 11 345556667777777777777777777642 322 1
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHH
Q 006627 479 TFIGLLNACSHA--------GLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG 549 (638)
Q Consensus 479 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 549 (638)
++..+..++... |++++|.+.++.+... .|+. ..+..+.... ...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHH
Confidence 344444444443 5667777777777653 2322 1221111110 000000 00112
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 550 ALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
.+...+...|++++|...++++++..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45567888999999999999999998765 4689999999999999999999999987654
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.7e-06 Score=76.49 Aligned_cols=311 Identities=11% Similarity=0.004 Sum_probs=154.9
Q ss_pred HHHHHhhhcCCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHH-HHHhccc
Q 006627 110 NALIQMYSECGSLVSARYLFDEMPNR---DVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISM-VSLFADV 185 (638)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~ 185 (638)
++.+..+++..++.+|++++....++ +....+.|..+|....++..|.++++++-. ..|...-|..- .+.+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 33444444555555555555444331 334455555555566666666666666554 23443333221 1222333
Q ss_pred CchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC-CCcccHHHHHHHHHhCCChHHHHHHHH
Q 006627 186 ADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-NSVVSWTVMISGYIRCNEINEGVRLFA 264 (638)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 264 (638)
+.+..|..+...+.+. ... -......-.......+++..+..+.++.+. .+..+.+...-...+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~-~~L--~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN-PAL--HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC-HHH--HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4444444444443321 000 011111111222345777777777777774 444455555555567788888888887
Q ss_pred HHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-----
Q 006627 265 EMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK----- 339 (638)
Q Consensus 265 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 339 (638)
...+-+--.....|+..+. ..+.++.+.|.+...+++++|++..+..-. |...+... .+.+..+
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~ 237 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQ 237 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHH
Confidence 7766533333455655553 445677888888888888877643222110 00000000 0000000
Q ss_pred --CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH
Q 006627 340 --DVMIWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA 416 (638)
Q Consensus 340 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (638)
-+..+|.-...+.+.++++.|.+.+.+|.-+. -..|++|...+.-. --.+++....+-++.+...+ |....+|..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 01123333344556677777777777763321 23455555543211 11233444444455555543 445567777
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAI 438 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~ 438 (638)
++-.||+..-++-|-.++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 7777777777777777765533
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=3.8e-06 Score=83.12 Aligned_cols=256 Identities=11% Similarity=-0.014 Sum_probs=142.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcCCCh-hhHHH---HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627 350 AYAQAHCIDKAFELFIHMKVSKVRPNE-VTMVG---LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG 425 (638)
Q Consensus 350 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (638)
.+...|++++|.+.+++..+. .|+. ..+.. ........+..+.+.+.+... ....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 455667777777777776654 2332 22221 111112234444444444331 1111222233344556677778
Q ss_pred CHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHhccCcHHHHHHH
Q 006627 426 DVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPNG--ITFIGLLNACSHAGLVTEGKSV 499 (638)
Q Consensus 426 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 499 (638)
++++|...+++.. ..+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888887777655 22455666777777788888888888877765421 1222 2345667777788888888888
Q ss_pred HHHHhhhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCCC---HhhHHHHHHHHhhcCChHHHHHHHH
Q 006627 500 FDKMVHGLGLVPKIEHY-G--CMVDLLGRAGLLDEAHEM--I-KSM-PLRPN---MIVWGALLAASKLHKNPSMGEIAAT 569 (638)
Q Consensus 500 ~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~ 569 (638)
+++........+..... + .++..+...|....+.++ + ... +..|. .........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88875321111222111 1 223333344433333333 1 111 11011 1122244556677888888888888
Q ss_pred HHhccCC---------CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 570 QILEIEP---------QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 570 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
.+....- .........+.++...|++++|.+.+......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7765221 12455677888899999999999998877643
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.4e-06 Score=79.80 Aligned_cols=425 Identities=11% Similarity=0.004 Sum_probs=240.1
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCC
Q 006627 145 RGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGN 224 (638)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 224 (638)
.+.+..|+++.|+..|-+..... ++|.+.|+.-..+++..|+++.|..=-....+..+.+ +..|.....++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHHHHHhccc
Confidence 45677899999999998887754 3466678888888888888888877777777777665 5667777777788888
Q ss_pred hHHHHHHHhccCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCC-hhhH-HHHHH
Q 006627 225 LAYAKQLFNRLNQN---SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGG-LQLG-KWLHA 299 (638)
Q Consensus 225 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a-~~~~~ 299 (638)
+++|+.-|.+-.+. |...++-+..++ ..+.+. +. ..-++..+..+..--...+. .+.+ ..+++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888888776652 233455555544 111111 10 01111111111110000000 0000 01111
Q ss_pred HHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHH----HHHHHHHHHHH-cCcCC
Q 006627 300 YILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCID----KAFELFIHMKV-SKVRP 374 (638)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~-~g~~p 374 (638)
.+. . .|+ -+..|....++..+...+......-...-...+ ......+. .......++.+ ....-
T Consensus 154 ~~~-~--~p~------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~d~~ee~~~k~ 222 (539)
T KOG0548|consen 154 IIQ-K--NPT------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEI--LASMAEPCKQEHNGFPIIEDNTEERRVKE 222 (539)
T ss_pred Hhh-c--CcH------hhhcccccHHHHHHHHHHhcCcccccccccccc--CCCCCCcccccCCCCCccchhHHHHHHHH
Confidence 110 0 010 011111111122222222211100000000000 00000000 00000000000 00001
Q ss_pred ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCC---chhHHHH---
Q 006627 375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRD---ICMWNAM--- 448 (638)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l--- 448 (638)
-..-...+.++.-+..+++.+.+-+....+.. -+..-++....+|...|.+......-....+.. ...|+.+
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 11223455666667778888888888877765 555556667778888888777766555433221 1123333
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHH
Q 006627 449 ----MAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLL 523 (638)
Q Consensus 449 ----~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 523 (638)
..+|.+.++++.++..|++.......|+.. .+....+++.+..+... -+.|.. .-...-+..+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEA 368 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHH
Confidence 335555678888888888877655454432 22333444544444432 233433 1222336778
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627 524 GRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 601 (638)
.+.|++..|+..+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+.++....+|++|.+.
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998 4455 5778888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 006627 602 RRVMKEIRV 610 (638)
Q Consensus 602 ~~~~~~~~~ 610 (638)
|++..+..+
T Consensus 449 y~eale~dp 457 (539)
T KOG0548|consen 449 YQEALELDP 457 (539)
T ss_pred HHHHHhcCc
Confidence 998766553
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=4.3e-06 Score=75.57 Aligned_cols=311 Identities=13% Similarity=0.060 Sum_probs=199.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHH---HHhcccCChhhHHHHHHHHHHhcCCCchhh-HHHHHHH
Q 006627 244 TVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLI---IECGFVGGLQLGKWLHAYILRNGFEFSLAM-ANALVDM 319 (638)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~ 319 (638)
-.+...+...|++..|+.-|....+- |+..|.++. ..|...|....|..-+...++. +||-.. ...-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 35777888889999999998887663 333443333 3455566666666555555543 343221 1112334
Q ss_pred HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHH
Q 006627 320 YGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLH 399 (638)
Q Consensus 320 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (638)
+.+.|.++.|..-|+.+.+.++.. +....+..+.--.++-. .....+..+...|+...|+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHH
Confidence 556677777776666655432210 00000111100001111 1122233455677888888888
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627 400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSE---AIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN 476 (638)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 476 (638)
..+.+.. +.|...+..-..+|...|++..|+.-++. +...+...+-.+-..+...|+.+.++...++-++. .||
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpd 255 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPD 255 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccc
Confidence 8887765 67777888888888888888888766654 34556667777777778888888888888877654 566
Q ss_pred HHH----HHHH---H------HHHhccCcHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 006627 477 GIT----FIGL---L------NACSHAGLVTEGKSVFDKMVHGLGLVPK-----IEHYGCMVDLLGRAGLLDEAHEMIKS 538 (638)
Q Consensus 477 ~~~----~~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (638)
... |..+ . ......+.|.++.+..+...+. .|. ...+..+-.++...|++-+|++...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 532 2211 1 1234567778888877777652 343 24456667788889999999999888
Q ss_pred C-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 539 M-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 539 ~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
. .+.|+ +.++..-..+|.-...++.|+.-|+++.+.+|+|..+..
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7 66675 788888888999999999999999999999998865544
No 105
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=2.3e-06 Score=81.12 Aligned_cols=213 Identities=9% Similarity=-0.031 Sum_probs=141.5
Q ss_pred CchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC-CHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCCh--HHHHH
Q 006627 390 GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG-DVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCG--EEALI 463 (638)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~A~~ 463 (638)
+..++|......+.+.. +-+..+++....++...| ++++++..++++... +..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34455555555555543 333344444444444555 456677666665522 334455444444445542 66788
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHH
Q 006627 464 FFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA---GLL----DEAHEMI 536 (638)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~ 536 (638)
+++++.+.. +-|..+|.....++...|+++++++.++++++. -+.+...|+.....+.+. |.. ++++++.
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 888888764 446678888888888889999999999999873 344556666666555444 222 4667776
Q ss_pred HhC-CCCC-CHhhHHHHHHHHhhc----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------------
Q 006627 537 KSM-PLRP-NMIVWGALLAASKLH----KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN----------------- 593 (638)
Q Consensus 537 ~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 593 (638)
.++ ...| +...|+.+...+... ++..+|...+.+++..+|+++.++..|+.+|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 554 5555 577888888887763 34567999999999999999999999999998743
Q ss_pred -CHHHHHHHHHHHh
Q 006627 594 -RWNDVAGVRRVMK 606 (638)
Q Consensus 594 -~~~~A~~~~~~~~ 606 (638)
..++|.++++.|.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 3477888888883
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=3.2e-05 Score=86.99 Aligned_cols=257 Identities=12% Similarity=-0.001 Sum_probs=117.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCcCCCh----hhHHHHHHHHhccCchHHHHHHHHHHHHhCC---CC--cccHHHHHHHHH
Q 006627 351 YAQAHCIDKAFELFIHMKVSKVRPNE----VTMVGLLSLCTEAGALEMGKWLHTYIEKQGL---EV--DVILKTALVDMY 421 (638)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 421 (638)
+...|++++|...+++....-...+. .....+...+...|+++.|...+++.....- .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34455556655555554332101111 1222333344455666666555554443110 11 112333444455
Q ss_pred HhcCCHHHHHHHHHcCCC-------CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc--HHHHHHHHHH
Q 006627 422 AKCGDVNGAYRLFSEAIY-------RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERS--GVKPN--GITFIGLLNA 486 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~~~~~l~~~ 486 (638)
...|++++|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 556666666555544221 00 112223334445556666666666654432 11111 1233334455
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCHh----hHHHHHHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHY-----GCMVDLLGRAGLLDEAHEMIKSMPLR--PNMI----VWGALLAAS 555 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~l~~~~ 555 (638)
+...|+++.|.+.++.+............+ ...+..+...|+.+.|.+++...... .... .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 556666776666666654310000000000 01112334456666666666554211 1111 123344555
Q ss_pred hhcCChHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 556 KLHKNPSMGEIAATQILEIEP------QNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
...|++++|...++++.+... .....+..++.++.+.|+.++|.+.+.+..+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777776665321 1223455666667777777777776666643
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=1.8e-07 Score=77.87 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=60.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhh
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKL 557 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 557 (638)
+..+...+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+++ ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445555566666666666666553 22334455555566666666666666666555 3333 34555555555556
Q ss_pred cCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
.|++++|+..+++++++.|+++..+...+.+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 66666666666666666666665555555543
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=1.9e-07 Score=77.79 Aligned_cols=108 Identities=7% Similarity=-0.073 Sum_probs=91.6
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 498 SVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
.++++..+ +.|+ .+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555543 3454 3556788889999999999999987 4455 67888999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
|+++.++..++.++...|++++|+..|++..+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999876554
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=1.1e-06 Score=76.87 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=95.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
..+...+...|+-+....+........ +.|.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 444555556666666666555543321 22334444466666666777777777766665 556666666666667777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627 526 AGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 526 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
.|++++|..-+.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....|.+..+-..|+-+....|+.++|+++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777776666655 3444 345556666666666777777777766666666666666666666667777776666544
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=3.9e-05 Score=75.95 Aligned_cols=266 Identities=11% Similarity=-0.055 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCChhhHHH-HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH---
Q 006627 342 MIWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNEVTMVG-LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA--- 416 (638)
Q Consensus 342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 416 (638)
..|..+...+...|+.+.+.+.+.+..+.. ..++...... ....+...|+++.|..+++...+.. |.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 445566666777777777766666654332 1223222221 2234567899999999999988864 445444442
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIYRDI---CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLV 493 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 493 (638)
........+..+.+.+.+......++ .....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 12222234566666666665332222 344455678889999999999999999874 44567788889999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHH------HHHHHHhhcCChHHH
Q 006627 494 TEGKSVFDKMVHGLGLVPKI--EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWG------ALLAASKLHKNPSMG 564 (638)
Q Consensus 494 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~------~l~~~~~~~~~~~~A 564 (638)
++|..++++........|+. ..|..+...+...|++++|..++++. ...|....+. .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999988632222332 34667888999999999999999987 2233111111 223333444543333
Q ss_pred HHH---HHHHhccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 565 EIA---ATQILEIEPQ--NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 565 ~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
... ........|. ........+.++...|+.++|.+.++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 332 1221111122 12233477888999999999999999986543
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=2.4e-06 Score=90.84 Aligned_cols=199 Identities=13% Similarity=0.133 Sum_probs=161.4
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC--------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-H
Q 006627 408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR--------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-I 478 (638)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~ 478 (638)
|.+...|-..|......++.++|+++.++.... -...|.++++.....|.-+...++|+++.+. -|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 555677777788888888999999888876632 2347888888878888888889999998874 333 5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HhhHHHHHHH
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN---MIVWGALLAA 554 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 554 (638)
.|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+..+-++|..++.++ ..-|. .......+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688889999999999999999999999655 66678888999999999999999999887 43443 3444555666
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
-++.|+.+.++.+|+..+.-.|.-...|.-+++.-.+.|+.+.++++|++....+..
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 678999999999999999999998889999999999999999999999998765543
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=9.4e-07 Score=87.88 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-
Q 006627 412 ILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA- 490 (638)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 490 (638)
..-..+...+...|-...|..++++ ...|.-.+.+|+..|+..+|..+..+-.++ +|++..|..+.+.....
T Consensus 399 q~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 3334444555555555555555543 233444455555555555555555544442 44555555554444443
Q ss_pred ---------------------------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 006627 491 ---------------------------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR 542 (638)
Q Consensus 491 ---------------------------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 542 (638)
++++++.+.|+.-.+ -.+....+|..+.-+..+.++++.|.+.|... ...
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 445555555544433 11223345555555556666666666666554 444
Q ss_pred CC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 543 PN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 543 p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
|+ ...|+.+-.+|.+.|+..+|...++++++-+-++..+|....-+..+.|.|++|.++++++.+
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 53 456666666666666666666666666666555555665555556666666666666666643
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=3e-06 Score=84.41 Aligned_cols=227 Identities=11% Similarity=-0.010 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627 345 NAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC 424 (638)
Q Consensus 345 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (638)
..+...+...|-...|+.++++.. .+..++.+|+..|+...|..+..+..+ . +||+..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k-~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-K-DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-C-CCcchhHHHhhhhccCh
Confidence 345667788889999999998765 466788889999999999999888777 3 89999999999998888
Q ss_pred CCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627 425 GDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMV 504 (638)
Q Consensus 425 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 504 (638)
.-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +--..+|..+..+..+.++++.|.+.|...+
T Consensus 471 s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 8899999998764433 11222222344789999999999877653 3455788888888889999999999999998
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--Ccc
Q 006627 505 HGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYG 580 (638)
Q Consensus 505 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~ 580 (638)
. +-+-+...|+.+-.+|.+.|+..+|...++++ +. .-+...|...+-.....|.+++|.+++.++.++.-+ ++.
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence 5 44556689999999999999999999999998 22 334567777777888999999999999999875433 344
Q ss_pred hHHHHHHH
Q 006627 581 YNVLMSNI 588 (638)
Q Consensus 581 ~~~~l~~~ 588 (638)
+...++..
T Consensus 625 vl~~iv~~ 632 (777)
T KOG1128|consen 625 VLLIIVRT 632 (777)
T ss_pred hhHHHHHH
Confidence 44444433
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.1e-06 Score=83.27 Aligned_cols=247 Identities=11% Similarity=-0.003 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627 350 AYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG 429 (638)
Q Consensus 350 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 429 (638)
-+.+.|+..+|.-.|+..+... +-+...|..|-......++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3456666777776776665542 2233456666666666666667777777776655 5566666677777777777777
Q ss_pred HHHHHHcCCCCCch-hHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 006627 430 AYRLFSEAIYRDIC-MWNAMM---------AGYGMHGCGEEALIFFVDM-ERSGVKPNGITFIGLLNACSHAGLVTEGKS 498 (638)
Q Consensus 430 A~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 498 (638)
|.+.++......+. .|.... ..+..........++|-++ .+.+..+|+.....|.-.|--.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 77777664311100 000000 0111111223344444444 455545777788888888888999999999
Q ss_pred HHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 499 VFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 499 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
.|+.++. ++| |..+||.|+..+....+.++|++.++++ .++|+ +.++..+.-.|...|.+++|...|=.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999985 445 6688999999999999999999999998 78887 5677788889999999999999999999876
Q ss_pred CC-----C-----cchHHHHHHHHHhcCCHHHHHHH
Q 006627 576 PQ-----N-----YGYNVLMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 576 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 601 (638)
+. . ..+|..|-.++...++.|-+.++
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 64 1 24777777778888877755444
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=4.3e-06 Score=73.26 Aligned_cols=154 Identities=16% Similarity=0.053 Sum_probs=103.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 006627 415 TALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG 491 (638)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 491 (638)
..+-..+...|+-+....+..... ..|......++....+.|++.+|+..+++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 555566666677666666666533 2244455557777777788888888888777654 667777777777888888
Q ss_pred cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-CHhhHHHHHHHHhhcCChHHHHHHHH
Q 006627 492 LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPL-RP-NMIVWGALLAASKLHKNPSMGEIAAT 569 (638)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~ 569 (638)
+.+.|..-|.+..+- ..-++..++.+...+.-.|+++.|..++..... .+ |...-..+.......|+++.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888877777652 233445667777777777888888887777622 22 45555666666677777777777655
Q ss_pred HH
Q 006627 570 QI 571 (638)
Q Consensus 570 ~~ 571 (638)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.61 E-value=5.2e-07 Score=73.44 Aligned_cols=96 Identities=9% Similarity=-0.008 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
......+...+...|++++|..+|+-. ...| +...|..|...+...|++++|+..|.++..++|++|..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 355556677788899999999999987 4555 57888899999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhc
Q 006627 591 VANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~ 608 (638)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988654
No 117
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=3.2e-06 Score=80.10 Aligned_cols=189 Identities=12% Similarity=0.028 Sum_probs=141.3
Q ss_pred HHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc--
Q 006627 419 DMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHG-CGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL-- 492 (638)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 492 (638)
..+...++.++|+.+..++... +..+|+....++...| ++++++..++++.+.. +-+..+|......+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 3344557888888888887743 3345665556666667 6799999999999874 4455667666555666665
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc---CC----hHH
Q 006627 493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH---KN----PSM 563 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~----~~~ 563 (638)
.+++..+++++.+ .-+-+...|+....++.+.|++++|++.++++ ...| +..+|+.......+. |. .+.
T Consensus 124 ~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 3678899988886 44557788999999999999999999999998 4444 567777776665543 22 256
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHhhcCC
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 610 (638)
+.....++++.+|+|..+|..++.++.. .++..+|.+......+.++
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 8888889999999999999999999988 4566778888887665443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=6.1e-06 Score=72.78 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=116.3
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 006627 419 DMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKS 498 (638)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 498 (638)
-.|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777776654443322221 01112556678888888877764 6677889999999999999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 499 VFDKMVHGLGLVPKIEHYGCMVDLL-GRAGL--LDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
.|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +..++..+...+...|++++|+..++++++
T Consensus 95 a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 95 AYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999986 3344667778888764 67777 59999999998 5555 578888888999999999999999999999
Q ss_pred cCCCCcchHHH
Q 006627 574 IEPQNYGYNVL 584 (638)
Q Consensus 574 ~~p~~~~~~~~ 584 (638)
++|.+..-+..
T Consensus 173 l~~~~~~r~~~ 183 (198)
T PRK10370 173 LNSPRVNRTQL 183 (198)
T ss_pred hCCCCccHHHH
Confidence 99887655443
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.59 E-value=0.00084 Score=65.17 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-cccHHHHHHHHHHhcCCHHHHHHHHH
Q 006627 357 IDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV-DVILKTALVDMYAKCGDVNGAYRLFS 435 (638)
Q Consensus 357 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 435 (638)
.+.....++++...-..--..+|..+++...+..-+..|..+|.++.+.+..+ ++.+++++++.|+. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666777776543322233467778888888888999999999999988777 78888999987775 77889999998
Q ss_pred cCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcC--
Q 006627 436 EAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLG-- 508 (638)
Q Consensus 436 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 508 (638)
-..+. ++.-....+.-+...|+-..+..+|++....++.|+. ..|..++.--+.-|+...+.++-++....+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 76632 4445566778888899999999999999998777766 6899999999999999999998888776443
Q ss_pred CCCChhHHHHHHHHHHhcCChH
Q 006627 509 LVPKIEHYGCMVDLLGRAGLLD 530 (638)
Q Consensus 509 ~~p~~~~~~~l~~~~~~~g~~~ 530 (638)
..+....-..+++-|.-.+...
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 3333333344455554444433
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.1e-05 Score=77.08 Aligned_cols=114 Identities=19% Similarity=0.110 Sum_probs=62.4
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMG 564 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A 564 (638)
+...|++++|+..++.+.. ..+-|+.......+.+.+.|+..+|.+.++++ ...|+ ...+..+.+++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3345556666666666554 23333444444455556666666666666555 34444 34444555566666666666
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
+..++.....+|+++..|..|+.+|...|+..+|....
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 66666666666666666666655555555544444443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=1e-05 Score=84.84 Aligned_cols=130 Identities=10% Similarity=-0.036 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHH
Q 006627 474 KPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGA 550 (638)
Q Consensus 474 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 550 (638)
..+...+..|.....+.|.+++|..+++.+.+ +.|+. .....++..+.+.+++++|+..+++. ...|+ ......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34456666666666677777777777776653 34443 44455566666677777777766666 44453 344455
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
+..++.+.|++++|...|++++..+|+++.++..++.++...|+.++|...|++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55566666777777777777777666666677777777777777777777766664
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.54 E-value=1.2e-06 Score=72.78 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 592 (638)
....+...+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444455555556666666666554 2223 4455555666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHhhc
Q 006627 593 NRWNDVAGVRRVMKEI 608 (638)
Q Consensus 593 g~~~~A~~~~~~~~~~ 608 (638)
|++++|...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666665543
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.4e-05 Score=67.13 Aligned_cols=197 Identities=10% Similarity=0.091 Sum_probs=126.8
Q ss_pred cCCHHHHHHHHHHHHH---cC-cCCChhh-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627 354 AHCIDKAFELFIHMKV---SK-VRPNEVT-MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN 428 (638)
Q Consensus 354 ~~~~~~a~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 428 (638)
..++++..+++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+...- |-+..+-..-.-.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~-------- 95 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAML-------- 95 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHH--------
Confidence 3456666666666533 23 4444443 3345556666777777777777766543 3232221111111
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC
Q 006627 429 GAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG 508 (638)
Q Consensus 429 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 508 (638)
+-..|++++|+++++.+.+.+ +.|..++..=+...-..|+.-+|++-+.+..+ .
T Consensus 96 -----------------------lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~ 149 (289)
T KOG3060|consen 96 -----------------------LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--K 149 (289)
T ss_pred -----------------------HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--H
Confidence 223456677777777777664 44556666666666667777788888888777 5
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccCCCCcchHH
Q 006627 509 LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK---NPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
+..|.+.|..+...|...|++++|.-.++++ -..| ++..+..+...+...| +.+.|++.|.++++++|.+...+.
T Consensus 150 F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 150 FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 6778888888888888888888888888887 3445 4555555655544433 678899999999999997655554
Q ss_pred HH
Q 006627 584 LM 585 (638)
Q Consensus 584 ~l 585 (638)
.+
T Consensus 230 GI 231 (289)
T KOG3060|consen 230 GI 231 (289)
T ss_pred HH
Confidence 33
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=2e-05 Score=83.46 Aligned_cols=233 Identities=10% Similarity=0.053 Sum_probs=132.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHH
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSL 385 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (638)
+...+..|+..+...+++++|..+.+...+. ....|-.+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3445556666666666666666666644322 222333333344555554443333 22222
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHH
Q 006627 386 CTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEAL 462 (638)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 462 (638)
.....++..+..+.+.+... .-+...+..+..+|-+.|+.++|...|+++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 33333343344444444442 23334566667777777777777777766552 2555666666666666 777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 006627 463 IFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR 542 (638)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (638)
+++.+.... +...+++..+.++|.++.. ..+.+...+..+.+.....-.. .
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~------------~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF------------T 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc------------c
Confidence 776665543 4455567777777777765 3333444433333332222111 1
Q ss_pred CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 543 PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 543 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
--..++..+...|...++++++..+++.+++.+|.|..+...++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223444555666777788888888888888888888888888888876
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.51 E-value=0.00021 Score=80.47 Aligned_cols=286 Identities=10% Similarity=-0.075 Sum_probs=135.5
Q ss_pred HcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC----CC---c-----chHHHHHHHHHh
Q 006627 82 AQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN----RD---V-----VSWSTMIRGYHR 149 (638)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~li~~~~~ 149 (638)
...|++..+...++.+.......++.........+...|+++++...+....+ .+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555554442111112222223333344455666666666543321 00 0 111122234456
Q ss_pred CCCchHHHHHHHHhHHCCCcCCH----hhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHHhc
Q 006627 150 GGLPEEALEVMREMRFMDIRPSE----VAMISMVSLFADVADVDLGKAIHACVVRNCKDEKL---GVAIATALIDMYSKC 222 (638)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 222 (638)
.|++++|...++.....-...+. .....+-..+...|+++.|...+............ .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 77777777777776542111111 12233334455677777777777666543222100 123344556667778
Q ss_pred CChHHHHHHHhccCC-------CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcC--ccCC--hHhHHHHHHHhcc
Q 006627 223 GNLAYAKQLFNRLNQ-------NS----VVSWTVMISGYIRCNEINEGVRLFAEMIEEN--VFPS--EITILSLIIECGF 287 (638)
Q Consensus 223 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~ 287 (638)
|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 888888777665432 11 1123344455666688888887777764421 1111 2223334445556
Q ss_pred cCChhhHHHHHHHHHHhcCCCc-hhhH-----HHHHHHHHhcCChHHHHHHHhcCCCCCch-------hHHHHHHHHHhc
Q 006627 288 VGGLQLGKWLHAYILRNGFEFS-LAMA-----NALVDMYGKCREIRSARTLFDGMKSKDVM-------IWNAVISAYAQA 354 (638)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~ 354 (638)
.|+.+.|...++......-... ...+ ...+..+...|+.+.|...+.....+... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 6777777776666543211000 0000 01122333456666666665554432110 012334445555
Q ss_pred CCHHHHHHHHHHH
Q 006627 355 HCIDKAFELFIHM 367 (638)
Q Consensus 355 ~~~~~a~~~~~~m 367 (638)
|++++|...+++.
T Consensus 705 g~~~~A~~~l~~a 717 (903)
T PRK04841 705 GQFDEAEIILEEL 717 (903)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=5.1e-06 Score=72.03 Aligned_cols=168 Identities=10% Similarity=0.033 Sum_probs=134.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL 523 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (638)
|..++-+....|+.+.|...++++... + |.+. .-..-...+...|.+++|.++++.+.++ -+-|..++..-+...
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 344555666778889999999998876 2 5443 3332333355789999999999999973 455677787777778
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---CHHHH
Q 006627 524 GRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN---RWNDV 598 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 598 (638)
-..|+.-+|++-+.+. .+..|...|..+...|...|++++|.-.+++++=.+|-++..+..++++++-.| ++.-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8889888998888777 566799999999999999999999999999999999999999999999988887 67778
Q ss_pred HHHHHHHhhcCCcCCCCe
Q 006627 599 AGVRRVMKEIRVKKEPGF 616 (638)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~ 616 (638)
+++|.+..+-.++...++
T Consensus 211 rkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHhChHhHHHH
Confidence 888988877666555444
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00012 Score=64.41 Aligned_cols=250 Identities=11% Similarity=-0.017 Sum_probs=144.7
Q ss_pred HHHhcCChHHHHHHHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHH
Q 006627 319 MYGKCREIRSARTLFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGK 396 (638)
Q Consensus 319 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (638)
-+.-.|.+..++..-..... .++..-.-+.++|...|.+.....-. .. |-.|....+..+-......++.+.-.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 33444566665554444332 22333333455666666554333221 11 11333333333333333344433332
Q ss_pred -HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006627 397 -WLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP 475 (638)
Q Consensus 397 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 475 (638)
.+.+.+.......+......-...|...|++++|++.......-. ....=...+.+..+.+.|.+.+++|.+ -.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~---id 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE--AAALNVQILLKMHRFDLAEKELKKMQQ---ID 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---cc
Confidence 333444443333333333334556778888888888887633222 222223445566778888888888885 24
Q ss_pred cHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHH
Q 006627 476 NGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWG 549 (638)
Q Consensus 476 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 549 (638)
+..|.+.|..++.+ .+.+.+|.-+|+++-. ..+|+..+.+....+....|++++|..+++++ +...++.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 55677767766643 4467888888888875 57788888888888888888888888888877 3333566665
Q ss_pred HHHHHHhhcC-ChHHHHHHHHHHhccCCCCc
Q 006627 550 ALLAASKLHK-NPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 550 ~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~ 579 (638)
.++-.....| +.+--.+...++....|+++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5555545555 44555667777777888754
No 128
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.2e-05 Score=74.05 Aligned_cols=182 Identities=13% Similarity=0.011 Sum_probs=124.3
Q ss_pred CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcc---cHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-Cch---h
Q 006627 374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDV---ILKTALVDMYAKCGDVNGAYRLFSEAIY--R-DIC---M 444 (638)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~ 444 (638)
.....+..+...+...|+++.|...++.+.... +.+. ..+..+..++...|++++|...++++.. | +.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345566677788899999999999999998764 3332 4667788999999999999999998863 3 222 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627 445 WNAMMAGYGMH--------GCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515 (638)
Q Consensus 445 ~~~l~~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 515 (638)
+..+..++... |++++|.+.++++... .|+. .....+..... .. .... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HH
Confidence 45555555544 7789999999999876 4543 23222211100 00 0000 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC---CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-PL---RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
...+...+.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 124556778889999998888877 22 23 3567788888888999999999888887766653
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=7e-06 Score=68.11 Aligned_cols=116 Identities=13% Similarity=-0.002 Sum_probs=89.9
Q ss_pred HHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 006627 464 FFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL 541 (638)
Q Consensus 464 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 541 (638)
.+++.... .|+ ......+...+...|++++|.+.++.+.. ..+.+...+..+..++...|++++|..+++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555543 443 35566677778888999999999998876 33456778888888999999999999988877 34
Q ss_pred CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 542 RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 542 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
.| +...+..+...+...|++++|...++++++++|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 44 5677778888899999999999999999999998766443
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=6.1e-06 Score=79.76 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=97.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHh
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASK 556 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 556 (638)
....|+..+...++++.|.++++++.+. .|+ ....+++.+...++..+|.+++++. ...| +...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666666777888888888888753 244 3344677777778888888888776 3344 5666666677888
Q ss_pred hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
..++++.|+.++++++++.|++...|..|+.+|...|++++|+-.+..+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999988764
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=6e-07 Score=52.77 Aligned_cols=32 Identities=44% Similarity=0.724 Sum_probs=16.6
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006627 406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEA 437 (638)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (638)
|++||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555444
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00011 Score=77.12 Aligned_cols=132 Identities=9% Similarity=0.039 Sum_probs=73.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627 442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV 520 (638)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 520 (638)
+..+..|.....+.|++++|..+++...+. .|+. .....++..+.+.+++++|...+++... .-+-+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 445555555555566666666666665553 3433 3455555566666666666666666654 2223334445555
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 521 DLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
.++...|++++|..+|+++ ...|+ ..++..+...+...|+.++|...|+++++...+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 5666666666666666665 12232 455556666666666666666666666665443
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=5.8e-07 Score=52.81 Aligned_cols=32 Identities=38% Similarity=0.502 Sum_probs=20.2
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 006627 305 GFEFSLAMANALVDMYGKCREIRSARTLFDGM 336 (638)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 336 (638)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00012 Score=64.35 Aligned_cols=244 Identities=9% Similarity=-0.030 Sum_probs=154.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV 427 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 427 (638)
++-+.-.|.+..++..-...... +.+...-..+-++|...|...... ..+.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 34455567777777655543322 122333333445555555543221 1222222 23333333333333333443
Q ss_pred HHHHH-HHHcCCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627 428 NGAYR-LFSEAIYR----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK 502 (638)
Q Consensus 428 ~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 502 (638)
++-.. +.+.+..+ +......-...|+..+++++|++...... +......=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 22223222 22233334457889999999999887622 233344444566788899999999999
Q ss_pred HhhhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 503 MVHGLGLVPKIEHYGCMVDLLG----RAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 503 ~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
|..- .+-.+.+.|..++. -.++..+|.-+|+++ +..|++.+.+.....+...|++++|..+++.++..+|
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9751 34456665665554 346789999999999 4778999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 006627 577 QNYGYNVLMSNIYAVANRWNDVA-GVRRVMKE 607 (638)
Q Consensus 577 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 607 (638)
++|.+...+..+-...|.-.++. +.+.+++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999988888876654 45665543
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=8.2e-05 Score=71.26 Aligned_cols=142 Identities=15% Similarity=0.015 Sum_probs=97.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCCh
Q 006627 451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLL 529 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 529 (638)
.+...|++++|+..++.+...- +-|..........+...++.++|.+.++++.. ..|+ ....-.+..+|.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 3445677888888888877652 33445555566677888888888888888874 3444 45555677788888888
Q ss_pred HHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 530 DEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 530 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+|+.++++. ..+.|+..|..|..+|...|+..++.. ..++.|+-.|+|++|...+...++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 8888888777 334467788888888888887665543 345556667777777777776665
Q ss_pred cCCcCC
Q 006627 608 IRVKKE 613 (638)
Q Consensus 608 ~~~~~~ 613 (638)
..-..+
T Consensus 454 ~~~~~~ 459 (484)
T COG4783 454 QVKLGF 459 (484)
T ss_pred hccCCc
Confidence 543333
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=8.9e-05 Score=78.68 Aligned_cols=206 Identities=10% Similarity=0.027 Sum_probs=113.5
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 006627 378 TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGC 457 (638)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 457 (638)
.+..|+..+...+++++|.++.+...+.. |.....|-.+...+...++.+++.-+ .++..+....+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 34444444445555555555555333332 22233333333344444444333322 12233333334
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006627 458 GEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIK 537 (638)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (638)
+..+..+...|... .-+...+..+..+|.+.|+.++|..+|+++.+- -+-++...|.+...|... ++++|.+++.
T Consensus 99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 43333333444432 233346666666777777777777777777652 244566666666666666 7777777666
Q ss_pred hCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch--------------------HHHHHHHHHhcCCHHH
Q 006627 538 SMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY--------------------NVLMSNIYAVANRWND 597 (638)
Q Consensus 538 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------------~~~l~~~~~~~g~~~~ 597 (638)
++ +..+...+++..+..+++++.+.+|++-.. +.-+-..|...++|++
T Consensus 174 KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 174 KA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 53 223445556666677777777766665443 2233366778889999
Q ss_pred HHHHHHHHhhcCCcCCC
Q 006627 598 VAGVRRVMKEIRVKKEP 614 (638)
Q Consensus 598 A~~~~~~~~~~~~~~~~ 614 (638)
+..+++.+.+...+...
T Consensus 242 ~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 242 VIYILKKILEHDNKNNK 258 (906)
T ss_pred HHHHHHHHHhcCCcchh
Confidence 99999999877665544
No 137
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=0.00015 Score=77.87 Aligned_cols=220 Identities=13% Similarity=0.081 Sum_probs=151.5
Q ss_pred hHHHHHHHhcccCChhhHHHHHHHHHHh-cCCC---chhhHHHHHHHHHhcCChHHHHHHHhcCCCC-C-chhHHHHHHH
Q 006627 277 TILSLIIECGFVGGLQLGKWLHAYILRN-GFEF---SLAMANALVDMYGKCREIRSARTLFDGMKSK-D-VMIWNAVISA 350 (638)
Q Consensus 277 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~li~~ 350 (638)
.|-..|......++.+.|+++.++++.. ++.- -..+|.++++.-..-|.-+...++|++..+- | ...|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3555555556666666666666665542 1211 2345667777777777777788888877653 2 3467778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHH
Q 006627 351 YAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLE-VDVILKTALVDMYAKCGDVNG 429 (638)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 429 (638)
|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.--. .........+..-.+.|+.+.
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence 88888888888888888764 3456677888888888888888888888887765311 134445556667778888888
Q ss_pred HHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHH
Q 006627 430 AYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGK 497 (638)
Q Consensus 430 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~ 497 (638)
+..+|+..... ....|+..++.-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-..++
T Consensus 1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 88888877633 5678888888888888888888888888888877754 34555555444445544333
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.29 E-value=0.0047 Score=60.20 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=82.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL 522 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (638)
+|..++..-.+..-...|..+|.+..+.+..+ ......+++..+| .++..-|.++|+--.+++|- ++.--...++.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 44455555555555566666666666555444 3344555555444 34555666666655543322 22333344555
Q ss_pred HHhcCChHHHHHHHHhC-C--CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc----chHHHHHHHHHhcC
Q 006627 523 LGRAGLLDEAHEMIKSM-P--LRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY----GYNVLMSNIYAVAN 593 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g 593 (638)
+...++-..|..+|++. + ..|+ ...|...+..-..-|+...+.++-++.....|.+. ..-..+..-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 55566666666666655 1 2222 35566666555566666666666666665555221 12334445555555
Q ss_pred CHHHHHHHHHHH
Q 006627 594 RWNDVAGVRRVM 605 (638)
Q Consensus 594 ~~~~A~~~~~~~ 605 (638)
++.--..-++.|
T Consensus 525 ~~~c~~~elk~l 536 (656)
T KOG1914|consen 525 LYPCSLDELKFL 536 (656)
T ss_pred cccccHHHHHhh
Confidence 555555545444
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.28 E-value=2.2e-06 Score=61.23 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=60.2
Q ss_pred CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHhhc
Q 006627 544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN-RWNDVAGVRRVMKEI 608 (638)
Q Consensus 544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 608 (638)
++.+|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|++.+++..+-
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999987653
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=3.1e-05 Score=64.85 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=71.6
Q ss_pred cCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----hhHHHHHHHHhhcCChHH
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM----IVWGALLAASKLHKNPSM 563 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 563 (638)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665322111 1122333445666677777777777766 222332 244455667777888888
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
|+..++.. .-.|-.+..+..+|.+|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88887663 333334667788888888888888888888753
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.26 E-value=2.9e-06 Score=59.70 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=53.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+...+...|++++|+..++++++.+|+++.++..++.++...|++++|..+|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999999999999876554
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=1.4e-06 Score=65.07 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=59.0
Q ss_pred cCChHHHHHHHHhC-CCCC---CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627 526 AGLLDEAHEMIKSM-PLRP---NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 526 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 601 (638)
.|++++|+.+++++ ...| +...+..+...+.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777776666 2222 445666678888889999999999988 778888778888889999999999999999
Q ss_pred HHH
Q 006627 602 RRV 604 (638)
Q Consensus 602 ~~~ 604 (638)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=1.3e-05 Score=64.73 Aligned_cols=96 Identities=10% Similarity=-0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHH
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMS 586 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 586 (638)
++..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666555 22222 2345556666777777777777777777776664 34566777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 587 NIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.++.+.|++++|.+.++.+.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777765544
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=2.4e-05 Score=70.04 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=72.5
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMG 564 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A 564 (638)
..+.++|.+|+..|.++++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566777777777777764 22234445555566777777777777776665 45554 56777777778888888888
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWN 596 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 596 (638)
++.|+++++++|++......|.++--+.+...
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888887766666666655544444
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.3e-05 Score=70.70 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=91.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc---CChHHHHHHHHHHhccCCCCcchH
Q 006627 508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH---KNPSMGEIAATQILEIEPQNYGYN 582 (638)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~ 582 (638)
..+-|...|..|...|...|+...|...|.++ .+.| ++..+..+..++... .+..++...+++++.++|.|....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34557788888888888888888888888877 3343 566666666655432 257899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCeeE
Q 006627 583 VLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSS 618 (638)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 618 (638)
..|+..+...|+|.+|...|+.|.+..++.+|..+-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 999999999999999999999999999988887543
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=4.9e-05 Score=73.61 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 006627 413 LKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL 492 (638)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 492 (638)
....|+..+...++++.|..+++++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334455556666777777777777776666666667777777777788888888877652 3355566666667778888
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 006627 493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR 542 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (638)
++.|.++.+++.+ -.+-+..+|..|..+|...|++++|+-.++.++..
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888888875 33334568888888888888888888888877533
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=2.1e-05 Score=60.53 Aligned_cols=94 Identities=19% Similarity=0.126 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN 593 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 593 (638)
+..++..+...|++++|...++++ ...| +...+..+...+...+++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 3344 34667777788888899999999999999999998889999999999999
Q ss_pred CHHHHHHHHHHHhhcC
Q 006627 594 RWNDVAGVRRVMKEIR 609 (638)
Q Consensus 594 ~~~~A~~~~~~~~~~~ 609 (638)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.16 E-value=0.015 Score=60.51 Aligned_cols=159 Identities=17% Similarity=0.078 Sum_probs=89.2
Q ss_pred HHHHHHHhccCchH---HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC----CchhHHHHHHHH
Q 006627 380 VGLLSLCTEAGALE---MGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR----DICMWNAMMAGY 452 (638)
Q Consensus 380 ~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~ 452 (638)
+.++..+.+.++.. +|+-+++...... +.|..+--.++..|.-.|-+..|.++|..+.-. |..-|. +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 35667777777655 3444455544443 555666677889999999999999999887633 322222 23444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHH---HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTE---GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL 528 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 528 (638)
...|++..+...+.....-- ..+. .+-..+..+| +.|.+.+ ...+=+++... .-.....+-+..+..+...++
T Consensus 518 ~t~g~~~~~s~~~~~~lkfy-~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKFY-DSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHHH-hhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence 55677777777766654321 1111 2222333333 2344443 33333333321 111122344556677778888
Q ss_pred hHHHHHHHHhCCCCC
Q 006627 529 LDEAHEMIKSMPLRP 543 (638)
Q Consensus 529 ~~~A~~~~~~~~~~p 543 (638)
.++-...+..|..+|
T Consensus 595 ~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPP 609 (932)
T ss_pred HHHHHHHHhccccCc
Confidence 888888888875443
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00025 Score=59.41 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh--hHHHHHH
Q 006627 446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNG---ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI--EHYGCMV 520 (638)
Q Consensus 446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~ 520 (638)
..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|+. .....+.
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3344444 4677888888888888763 3331 23444556778889999999999998874 322222 2344567
Q ss_pred HHHHhcCChHHHHHHHHhCCCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 521 DLLGRAGLLDEAHEMIKSMPLR-PNMIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
.++...|++++|+..++..... ..+..+......+...|+.++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7888889999999999776322 345566677788889999999999998764
No 150
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.07 E-value=0.00045 Score=57.19 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=114.4
Q ss_pred CCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHhhH
Q 006627 473 VKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP---NMIVW 548 (638)
Q Consensus 473 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 548 (638)
..|+...-..|..+....|++.+|...|++.... -+.-|..+.-.+.++....+++..|...+++. ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3677777788889999999999999999999873 45567788888889999999999999999887 3333 35566
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627 549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPG 615 (638)
Q Consensus 549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 615 (638)
..+..++...|.+++|+..|+.++...|+ +.....++..+.++|+.++|..-+..+-+.-.+..|+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 66788899999999999999999999998 7888889999999999888877666555444433343
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=1.7e-05 Score=70.98 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=78.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 006627 520 VDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWND 597 (638)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 597 (638)
..-+.+.+++++|+..+.++ .+.| |+..|..-..+|.+.|.++.|++..+.++.++|.....|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44567889999999999988 6777 566667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 006627 598 VAGVRRVMKE 607 (638)
Q Consensus 598 A~~~~~~~~~ 607 (638)
|++.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999996654
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00025 Score=66.29 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=110.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH-------------H
Q 006627 450 AGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH-------------Y 516 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 516 (638)
.++...|++++|...--..++.. ..+......-..++-..++.+.|...|++.+ .+.|+-.. +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 45667788888888777666542 2222222222233446778888888888876 34554322 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 517 GCMVDLLGRAGLLDEAHEMIKSM-PLRP-----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
..=..-..+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+...+.+++++|.-..+|..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 22233456789999999999887 4444 44455555566778999999999999999999998889999999999
Q ss_pred hcCCHHHHHHHHHHHhhc
Q 006627 591 VANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~ 608 (638)
..++|++|++.+++..+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999887543
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=9.9e-06 Score=48.52 Aligned_cols=35 Identities=29% Similarity=0.645 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCCh
Q 006627 241 VSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSE 275 (638)
Q Consensus 241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 275 (638)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=4.7e-05 Score=74.24 Aligned_cols=109 Identities=10% Similarity=-0.007 Sum_probs=92.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC
Q 006627 482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK 559 (638)
Q Consensus 482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 559 (638)
.-...+...|++++|++.|+++++ ..+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345567788999999999999986 34446678888899999999999999999998 5556 5778888999999999
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627 560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 592 (638)
++++|+..++++++++|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888887775555
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1e-05 Score=48.08 Aligned_cols=34 Identities=26% Similarity=0.633 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcC
Q 006627 137 VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRP 170 (638)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 170 (638)
+.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=9e-05 Score=59.82 Aligned_cols=105 Identities=9% Similarity=0.013 Sum_probs=69.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHH
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALL 552 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 552 (638)
++..+...+.+.|++++|.+.+..+.+.+.-.| ....+..+..++.+.|++++|...++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445555666677777777777777765321111 1234555677777777777777777766 22333 45566777
Q ss_pred HHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 553 AASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
.++...|+.++|...++++++..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888888888888888888765443
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.1e-05 Score=48.27 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc
Q 006627 38 RYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDN 71 (638)
Q Consensus 38 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 71 (638)
+||.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999888888873
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=97.98 E-value=6.7e-05 Score=61.61 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627 518 CMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW 595 (638)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 595 (638)
....-+...|++++|..+|+-+ -..| ++..|..|...+...+++++|+..|..+..++++||....+.+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444556789999999998877 2233 5677888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 006627 596 NDVAGVRRVMKE 607 (638)
Q Consensus 596 ~~A~~~~~~~~~ 607 (638)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.95 E-value=1.2e-05 Score=57.13 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=46.1
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4578889999999999999999999999999999999999999999987765544
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.0001 Score=63.84 Aligned_cols=95 Identities=14% Similarity=0.018 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
.+..+...+...|++++|...++++ ...|+ ...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455555566666666666666655 22222 356677777888888888888888888888888888888888888
Q ss_pred HhcCC--------------HHHHHHHHHHHhhcC
Q 006627 590 AVANR--------------WNDVAGVRRVMKEIR 609 (638)
Q Consensus 590 ~~~g~--------------~~~A~~~~~~~~~~~ 609 (638)
...|+ +++|.+++++..+..
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 88776 566666666665443
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.6e-05 Score=47.19 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCccC
Q 006627 241 VSWTVMISGYIRCNEINEGVRLFAEMIEENVFP 273 (638)
Q Consensus 241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 273 (638)
.+|+.+|.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.95 E-value=2.9e-05 Score=56.12 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=53.7
Q ss_pred HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 552 LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 552 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...+.+.++++.|..+++++++++|+++..+...|.+|...|++++|.+.++...+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999886655
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00013 Score=71.05 Aligned_cols=102 Identities=12% Similarity=-0.037 Sum_probs=80.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG 527 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (638)
....+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++++ -.+.+...|..+..++...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3456677899999999999999864 44567888888999999999999999999986 23345677888899999999
Q ss_pred ChHHHHHHHHhC-CCCCCHhhHHHHH
Q 006627 528 LLDEAHEMIKSM-PLRPNMIVWGALL 552 (638)
Q Consensus 528 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 552 (638)
++++|+..|+++ ...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999887 5666544443333
No 164
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.90 E-value=0.024 Score=54.14 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=86.5
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCch-hHHHHHHHHH
Q 006627 378 TMVGLLSLCTEAGALEMGKWLHTYIEKQG-LEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--YRDIC-MWNAMMAGYG 453 (638)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~ 453 (638)
.|...+++..+..-++.|..+|-++.+.+ +.+++.++++++..++. |+..-|..+|+-.. -+|.. -.+..+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44556666667777888888888888877 56778888888876654 67777888887544 33433 3345566667
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 454 MHGCGEEALIFFVDMERSGVKPN--GITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 454 ~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
..|+-+.|..+|+..... +..+ ...|..++..-..-|+...+..+-+++.+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778888888888765543 2333 35677777777777888777777666654
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.89 E-value=0.00032 Score=58.01 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=97.8
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM---PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
++..+.....|++..-..|..++.+.|+..+|...|++. .+.-|......+.++....+++..|...++++.+.+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 344444466788888889999999999999999999988 35567888899999999999999999999999999995
Q ss_pred --CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627 578 --NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE 613 (638)
Q Consensus 578 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (638)
.|.....++.+|...|++++|+..|+...+..+.+.
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 678899999999999999999999999887665543
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.049 Score=56.84 Aligned_cols=513 Identities=10% Similarity=0.003 Sum_probs=244.9
Q ss_pred HhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH--HcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhH
Q 006627 47 IKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKAC--AQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVS 124 (638)
Q Consensus 47 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 124 (638)
...+++..|.....++.++ .|+. .|..+++++ .+.|..++|..+++.....+.. |..+...+-..|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3456677777777777664 2332 344445543 4667777777777766655533 66677777777777777777
Q ss_pred HHHHhccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccC----------chHHHH
Q 006627 125 ARYLFDEMPN--RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVA----------DVDLGK 192 (638)
Q Consensus 125 a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------~~~~a~ 192 (638)
|..+++...+ |+......+.-+|.|.+++.+-.+.--+|-+. .+-+...|-++++.....- -+..|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 7777777665 44333334445556655554433332222221 2223334444444332110 112344
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhc-cC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 006627 193 AIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNR-LN----QNSVVSWTVMISGYIRCNEINEGVRLFAEMI 267 (638)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 267 (638)
...+.+.+.+ +.-.+..-...-...+...|++++|..++.. .. ..+...-+--+..+...+++.+..++-.++.
T Consensus 175 ~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4444444444 1101222222333445566778888777732 11 2223333455666777788888888887777
Q ss_pred HcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHH
Q 006627 268 EENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMIWNA 346 (638)
Q Consensus 268 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 346 (638)
.+| +|. |...+.. +++-+.....+| ... .+...+..+...+...+.... ....|-+
T Consensus 254 ~k~--~Dd--y~~~~~s------------v~klLe~~~~~~-a~~------~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA 310 (932)
T KOG2053|consen 254 EKG--NDD--YKIYTDS------------VFKLLELLNKEP-AEA------AHSLSKSLDECIEKAQKNIGSKSRGPYLA 310 (932)
T ss_pred HhC--Ccc--hHHHHHH------------HHHHHHhccccc-chh------hhhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence 764 332 3322221 111111111111 111 111122233333333222211 1111212
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHHcCcCC----Chh---------hHHHHHHHHhccC-chHHHHHHHHHHHHhCCCC
Q 006627 347 VIS---AYAQAHCIDKAFELFIHMKVSKVRP----NEV---------TMVGLLSLCTEAG-ALEMGKWLHTYIEKQGLEV 409 (638)
Q Consensus 347 li~---~~~~~~~~~~a~~~~~~m~~~g~~p----~~~---------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~ 409 (638)
-+. -+-.-|+.+++...|-+ +-|-.| |.. -...++..+.... +.....+.++.
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~-------- 380 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ-------- 380 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH--------
Confidence 122 22234556555443322 112111 111 1122222222211 11111111111
Q ss_pred cccHHHHHHHHHHhcCC-----HHHHHHH-------HHcCC------CC------Cc---hhHHHHHHHHHhcCChH---
Q 006627 410 DVILKTALVDMYAKCGD-----VNGAYRL-------FSEAI------YR------DI---CMWNAMMAGYGMHGCGE--- 459 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~-----~~~A~~~-------~~~~~------~~------~~---~~~~~l~~~~~~~~~~~--- 459 (638)
+.+.+....-.|. -+.-..+ |+.-. -| +. .+.+.|+..+.+.++..
T Consensus 381 ----h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~ 456 (932)
T KOG2053|consen 381 ----HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLF 456 (932)
T ss_pred ----HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 0111111111111 0111111 11110 11 11 25667788888888765
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
+|+-+++.-.... +-|..+-..+++.|+-.|-...|.+.|+.+--+ .+.-|...|. +..-+...|++..+...++..
T Consensus 457 eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 457 EAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 4555566555543 456677778889999999999999999988654 5555554432 345566778888888887765
Q ss_pred -CC-CCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 540 -PL-RPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEP----QNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 540 -~~-~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
.+ ..+ ..+-..+..+ .+.|.+.+-.+...-=-.++- .-..+-......+...++.++-...+..|+
T Consensus 534 lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 534 LKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 11 111 1222233333 456766655443321111211 112334566777888888888888888776
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00013 Score=62.92 Aligned_cols=93 Identities=12% Similarity=-0.162 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN 587 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 587 (638)
...+..++..+...|++++|...++++ ...|+ ..++..+...+...|++++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888887776 22222 3477888888999999999999999999999998888888888
Q ss_pred HHH-------hcCCHHHHHHHHHHH
Q 006627 588 IYA-------VANRWNDVAGVRRVM 605 (638)
Q Consensus 588 ~~~-------~~g~~~~A~~~~~~~ 605 (638)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666665544
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.86 E-value=0.00071 Score=68.97 Aligned_cols=121 Identities=15% Similarity=0.048 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhcc--------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627 458 GEEALIFFVDMERSGVKPNG-ITFIGLLNACSHA--------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL 528 (638)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 528 (638)
...|..+|++..+. .|+. ..+..+..++... .+...+.+...+.......+.+...+..+.......|+
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 56777788887775 4544 4454444333211 11233333333322210123344555555555555677
Q ss_pred hHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 529 LDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 529 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
+++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 436 ~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 436 TDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 77777777766 45566666666777777777777777777777777777654
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.86 E-value=0.025 Score=53.02 Aligned_cols=242 Identities=15% Similarity=0.106 Sum_probs=157.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCChh--hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627 352 AQAHCIDKAFELFIHMKVSKVRPNEV--TMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG 429 (638)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 429 (638)
.-.|+++.|.+-|+.|.. .|... -...|.-...+.|+.+.|.++-+..-..- +.-.....+.+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 345777777777777764 22222 22334444456677777777776665543 4445566777777888888888
Q ss_pred HHHHHHcCC-----CCCch--hHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHH
Q 006627 430 AYRLFSEAI-----YRDIC--MWNAMMAGY---GMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLVTEGKS 498 (638)
Q Consensus 430 A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 498 (638)
|+++++.-. .+++. .--.|+.+- .-..+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 888876432 33332 111222211 112345566665555443 467663 44555678899999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
+++.+-+ ..|.+.++... ...+.|+.. +.-+++. ..+|| .........+....|++..|..-.+.+..
T Consensus 285 ilE~aWK---~ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 285 ILETAWK---AEPHPDIALLY--VRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHHh---cCCChHHHHHH--HHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9999864 45666554322 334555543 3333333 34554 56777778888899999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 006627 574 IEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKE 607 (638)
Q Consensus 574 ~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 607 (638)
..|. ..+|.+|+++-... ||-.++...+-+..+
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 9998 57899999997776 999999998886654
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00033 Score=65.77 Aligned_cols=133 Identities=10% Similarity=0.123 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA-CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL 522 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (638)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+ .+..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 57777788888888888888888888543 3344555555444 3335677779999999987 456667778888888
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 523 LGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999887 32333 34888888888899999999999999998888743
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=7.3e-05 Score=52.44 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 519 MVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
+...+...|++++|.+.|+++ ...| +...+..+...+...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 4456 577888888999999999999999999999999874
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00028 Score=54.07 Aligned_cols=92 Identities=21% Similarity=0.125 Sum_probs=45.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN 560 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 560 (638)
+...+...|++++|...++++.+ ..+.+...+..+..++...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33344444555555555555443 11222234444455555555555555555544 2222 23455555555666666
Q ss_pred hHHHHHHHHHHhccCC
Q 006627 561 PSMGEIAATQILEIEP 576 (638)
Q Consensus 561 ~~~A~~~~~~~~~~~p 576 (638)
++.|...++++++..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666666555
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.77 E-value=1.9e-05 Score=46.29 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=31.1
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 006627 568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG 600 (638)
Q Consensus 568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 600 (638)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.039 Score=52.50 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627 312 MANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA 391 (638)
Q Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (638)
+.+..+.-+...|+...|.++-.+..-|+...|-..+.+++..++|++-.++-.. +-++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566667778888888888887777778888888888888888776654321 2245777788888888888
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 006627 392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRL 433 (638)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 433 (638)
..+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 87777776551 124556777888887777654
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.00087 Score=58.06 Aligned_cols=129 Identities=11% Similarity=0.034 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627 443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN--GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV 520 (638)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 520 (638)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455556666666777777777776665432221 245666666666667777777776666642 222334444555
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627 521 DLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR 594 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 594 (638)
.++...|+...+..-++.+ ...+++|.+.++++++.+|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5555555544444322221 112677889999999999987 5555555555444
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.72 E-value=0.00024 Score=65.38 Aligned_cols=87 Identities=8% Similarity=-0.085 Sum_probs=51.6
Q ss_pred HhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCH
Q 006627 524 GRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRW 595 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 595 (638)
.+.|++++|...|+.. ...|+ +..+..+...+...|++++|...|+++++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445555555555544 22232 2345556666667777777777777777666654 34455556667777777
Q ss_pred HHHHHHHHHHhhcCC
Q 006627 596 NDVAGVRRVMKEIRV 610 (638)
Q Consensus 596 ~~A~~~~~~~~~~~~ 610 (638)
++|.++|+.+.+..+
T Consensus 234 ~~A~~~~~~vi~~yP 248 (263)
T PRK10803 234 AKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHHCc
Confidence 777777776655444
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.0056 Score=55.99 Aligned_cols=173 Identities=13% Similarity=0.007 Sum_probs=98.8
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCC--Cc-h---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIYR--DI-C---MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH- 489 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~--~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 489 (638)
....+...|++++|.+.|+++... +. . ..-.++.++.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 334445567777777777665522 11 1 1123456667777777777777777765211111233333333221
Q ss_pred -c---------------Cc---HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHH
Q 006627 490 -A---------------GL---VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGA 550 (638)
Q Consensus 490 -~---------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 550 (638)
. .| ...|.+.|+.+++++ |+. .-..+|...+..+...- ..--..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 11 223445555555432 222 22333333333221000 001113
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
+...|.+.|.+..|..-++.+++..|+. +.+...++.+|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566888999999999999999988874 4567788999999999999999887664
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=0.00011 Score=54.64 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=47.3
Q ss_pred cCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 006627 455 HGCGEEALIFFVDMERSGVK-PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 455 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 532 (638)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. ...| +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46777777777777765321 23344555677777777777777777662 1222 223334456677777777777
Q ss_pred HHHHHh
Q 006627 533 HEMIKS 538 (638)
Q Consensus 533 ~~~~~~ 538 (638)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.064 Score=51.57 Aligned_cols=202 Identities=16% Similarity=0.089 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH-------HHHHHHh-c---cCchHHHHHHHHHHHHhCCCC
Q 006627 341 VMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV-------GLLSLCT-E---AGALEMGKWLHTYIEKQGLEV 409 (638)
Q Consensus 341 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-------~ll~~~~-~---~~~~~~a~~~~~~~~~~~~~~ 409 (638)
..++..++....+.++..+|.+.+.-+... .|+...-. .+.+..+ . ..+...-..+|+.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 446777788888888888888887766542 34333111 1112222 1 112233344555555544322
Q ss_pred cccHHHHHH---HHHHhcCC-HHHHHHHHHcCC---CCCchhHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCC
Q 006627 410 DVILKTALV---DMYAKCGD-VNGAYRLFSEAI---YRDICMWNAMM----AGYGM---HGCGEEALIFFVDMERSGVKP 475 (638)
Q Consensus 410 ~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~m~~~~~~p 475 (638)
......|+ +-+-+.|. -++|..+++.+. .-|...-|... .+|.+ ......-+.+-+-..+.|++|
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 12222222 23445555 777888887766 23444433332 22322 223445555555566778777
Q ss_pred cH----HHHHHHHHH--HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHH
Q 006627 476 NG----ITFIGLLNA--CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG 549 (638)
Q Consensus 476 ~~----~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 549 (638)
-. ..-+.|..+ +...|++.++.-+-.-+. .+.|++.+|..++-++....++++|.+++.++| |+..+++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 43 333344333 457899999887766554 678999999999999999999999999999885 4555554
Q ss_pred H
Q 006627 550 A 550 (638)
Q Consensus 550 ~ 550 (638)
.
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 3
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=7.7e-05 Score=52.95 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=33.2
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627 525 RAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
..|++++|+++|+++ ...| +...+..+...+...|++++|...++++...+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345555555555554 2223 4455555556666666666666666666666666555544443
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0025 Score=65.13 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=95.8
Q ss_pred CCCCcHHHHHHHHHHHhc--c---CcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhc--------CChHHHHHHHH
Q 006627 472 GVKPNGITFIGLLNACSH--A---GLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRA--------GLLDEAHEMIK 537 (638)
Q Consensus 472 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~ 537 (638)
+.+.|...|..++++... . ++...|..+|+++++ ..|+. ..+..+..++... ++...+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345677788888877432 2 347789999999985 45664 3444443333221 22344555555
Q ss_pred hC---C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 538 SM---P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 538 ~~---~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+. + ...++..+..+.-.....|++++|...++++++++|. ...|..+|.++...|+.++|.+.+++...-.+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 53 1 2335567777766667789999999999999999995 78999999999999999999999998865444
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.0036 Score=59.15 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhc
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH-GCGEEALIFFVDMERS----GVKPN--GITFIGLLNACSH 489 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~ 489 (638)
.+..|...|++..|-+.+.+ +...|... |++++|++.|++..+. | .+. ..++..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34556666776666655433 55556565 6777777777765532 2 222 1346667777888
Q ss_pred cCcHHHHHHHHHHHhhhcCCC-----CCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------HhhHHHHHHHHh
Q 006627 490 AGLVTEGKSVFDKMVHGLGLV-----PKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN------MIVWGALLAASK 556 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~-----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~ 556 (638)
.|++++|.++|++.... ... .+. ..+-..+-++...|+...|.+.+++. ...|. ......++.++-
T Consensus 168 l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88888888888887653 221 112 12233344666678888888888776 23332 234455555554
Q ss_pred hc--CChHHHHHHHHHHhccCC
Q 006627 557 LH--KNPSMGEIAATQILEIEP 576 (638)
Q Consensus 557 ~~--~~~~~A~~~~~~~~~~~p 576 (638)
.. ..++.++.-|..+..++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 32 234555555555555444
No 183
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00012 Score=42.24 Aligned_cols=31 Identities=32% Similarity=0.693 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCc
Q 006627 241 VSWTVMISGYIRCNEINEGVRLFAEMIEENV 271 (638)
Q Consensus 241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 271 (638)
++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887763
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00011 Score=42.43 Aligned_cols=31 Identities=48% Similarity=0.694 Sum_probs=26.6
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 006627 138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDI 168 (638)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 168 (638)
.+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0036 Score=53.99 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKP--NGITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
.|..+...+...|++++|+..+++.......| ...++..+...+...|++++|.+.+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555556666666666666665442122 123566666666666777777776666654
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.53 E-value=0.0012 Score=52.13 Aligned_cols=85 Identities=13% Similarity=-0.046 Sum_probs=57.7
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 006627 520 VDLLGRAGLLDEAHEMIKSM---PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ---NYGYNVLMSNIYAV 591 (638)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 591 (638)
..++-..|+.++|+.++++. +.... ...+..+..++...|++++|..++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666655 21111 345556677777888888888888888887777 66667777778888
Q ss_pred cCCHHHHHHHHHH
Q 006627 592 ANRWNDVAGVRRV 604 (638)
Q Consensus 592 ~g~~~~A~~~~~~ 604 (638)
.|++++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 8888888876544
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.02 Score=57.19 Aligned_cols=20 Identities=10% Similarity=-0.085 Sum_probs=13.4
Q ss_pred HHhhcCChHHHHHHHHHHhc
Q 006627 554 ASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 554 ~~~~~~~~~~A~~~~~~~~~ 573 (638)
++.+.|+..+|.++++++..
T Consensus 826 AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhh
Confidence 44556677777777777654
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.09 Score=50.08 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 006627 413 LKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL 492 (638)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 492 (638)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++...+... +-.+..|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455556667777777777777777777777777777777777766654321 1123556667777777777
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
..+|..+..++. +..-+..|.+.|++.+|.+.-.+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777776665531 133455667777777776665443
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.097 Score=50.39 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=74.0
Q ss_pred HhccCc-HHHHHHHHHHHhhhcCCCCChhHHHHHHH----HHHhc---CC---hHHHHHHHHhCCCCCC----HhhHHHH
Q 006627 487 CSHAGL-VTEGKSVFDKMVHGLGLVPKIEHYGCMVD----LLGRA---GL---LDEAHEMIKSMPLRPN----MIVWGAL 551 (638)
Q Consensus 487 ~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~---g~---~~~A~~~~~~~~~~p~----~~~~~~l 551 (638)
+.+.|. -++|.++++.+.+ --+-|...-+.+.. .|... .. .-+-..++++.++.|- ...-+.|
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 445555 6778888877764 12223333222221 11111 11 1222334455555552 3344445
Q ss_pred HHH--HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 552 LAA--SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 552 ~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
..+ ...+|++.++.-...=+.+..| ++.+|.++|-++....+|++|.++++.+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 433 4679999999988888889999 6999999999999999999999999866
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.49 E-value=0.012 Score=48.38 Aligned_cols=91 Identities=8% Similarity=-0.121 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
-.+..-+...|++++|..+|+-+..-. +-+..-|..|..+|-..|++++|+..|..... --+.++..+-.+..++..
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHH
Confidence 334444455566666666666555432 22334455555555556666666666666554 112344555555566666
Q ss_pred cCChHHHHHHHHhC
Q 006627 526 AGLLDEAHEMIKSM 539 (638)
Q Consensus 526 ~g~~~~A~~~~~~~ 539 (638)
.|+.+.|.+.|+..
T Consensus 116 lG~~~~A~~aF~~A 129 (157)
T PRK15363 116 CDNVCYAIKALKAV 129 (157)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666655543
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0011 Score=50.27 Aligned_cols=80 Identities=14% Similarity=0.002 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCc-cCChHhHHHHHHHhcccC--------ChhhHHHHHHHHHHhcCCCchhhH
Q 006627 243 WTVMISGYIRCNEINEGVRLFAEMIEENV-FPSEITILSLIIECGFVG--------GLQLGKWLHAYILRNGFEFSLAMA 313 (638)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 313 (638)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999887653 244567889999999999999999
Q ss_pred HHHHHHHHh
Q 006627 314 NALVDMYGK 322 (638)
Q Consensus 314 ~~l~~~~~~ 322 (638)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.00023 Score=50.62 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC-ChHHHHHHHHHHhccCC
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK-NPSMGEIAATQILEIEP 576 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 576 (638)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666777777777777777777766 3445 4667777888888888 68899999999988887
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.46 E-value=0.0018 Score=60.84 Aligned_cols=131 Identities=8% Similarity=0.017 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR-AGLLDEAHEMIKSM--PLRPNMIVWGALLAA 554 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 554 (638)
.+|..++....+.+..+.|..+|.++.+. -..+...|-.....-.. .++.+.|.++|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999853 23344555555555333 56777799999988 345578889999999
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
....++.+.|+.+|++++..-|.+. ..|..++..-.+.|+.+.+.++.+++.+.-.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999877644 5889999999999999999999998876533
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.43 E-value=0.021 Score=54.68 Aligned_cols=161 Identities=17% Similarity=0.074 Sum_probs=95.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCC-------CchhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627 416 ALVDMYAKCGDVNGAYRLFSEAIYR-------DICMWNAMMAGYGM---HGCGEEALIFFVDMERSGVKPNGITFIGLLN 485 (638)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 485 (638)
.++-.|....+++...++.+.+... ....--...-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455556666666666555533 11112223344555 6788888888888655555777778777776
Q ss_pred HHhc---------cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---HhC----C---CC
Q 006627 486 ACSH---------AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLD----EAHEMI---KSM----P---LR 542 (638)
Q Consensus 486 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----~---~~ 542 (638)
.|-. ....++|...|.+.. .+.|+...--.++..+...|... +..++- ..+ + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6521 224677888888775 44566543333333444444322 222222 111 1 22
Q ss_pred CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 543 PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 543 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
.+-..+-+++.++.-.||+++|.+.+++++.+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3445556788899999999999999999999987753
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.42 E-value=0.00021 Score=45.11 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=38.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627 546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN 587 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 587 (638)
.++..+..++...|++++|++.++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999999988875
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.39 E-value=0.00068 Score=65.44 Aligned_cols=65 Identities=11% Similarity=-0.162 Sum_probs=44.6
Q ss_pred CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY---NVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
+...+..+..++...|++++|+..++++++++|+++.. |..++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35666666777777777777777777777777776643 677777777777777777777766553
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0082 Score=54.67 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC-
Q 006627 464 FFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA---GLLDEAHEMIKSM- 539 (638)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~- 539 (638)
-++.-...+ +-|...|..|...|...|+.+.|...|....+ -..+++..+..+..++..+ ....++.++|+++
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444443 55678999999999999999999999999987 4455666777777776544 3567899999998
Q ss_pred CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 540 PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 540 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
...| ++.+...|...+...|++.+|...++.+++..|.+.....
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 5555 5677777888899999999999999999999888654433
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0028 Score=62.00 Aligned_cols=118 Identities=10% Similarity=0.025 Sum_probs=81.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627 307 EFSLAMANALVDMYGKCREIRSARTLFDGMKSK------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV 380 (638)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 380 (638)
+.+......+++.+....+++.+..++-+.... -..+..++++.|...|..+.++.+++.=..-|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444445555555555566666665554421 22345678888888888888888888888888888888888
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627 381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC 424 (638)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (638)
.||..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877776666666655555555444
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0044 Score=60.64 Aligned_cols=82 Identities=9% Similarity=0.042 Sum_probs=54.5
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 006627 242 SWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYG 321 (638)
Q Consensus 242 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (638)
+..++|+.|.+.|..+.++++++.=..-|+.||..+++.+|..+.+.|++..|.++...|..++...+..++..-+.+|.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 34566777777777777777777766677777777777777777777777777777777766665555555544444444
Q ss_pred hc
Q 006627 322 KC 323 (638)
Q Consensus 322 ~~ 323 (638)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 43
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.32 E-value=0.0015 Score=49.45 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=68.9
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCC-CCCcccHHHHHHHHHccc--------CchHHHHHHHHHHHhCCCCChh
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGS-EVDNFTIPTILKACAQVL--------MTHLGKEIHGFAIKNGLDGDAY 107 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 107 (638)
.+-...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..++. ..-....+++.|+..++.|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 4455667777777999999999999999999 899999999999987653 2344778899999999999999
Q ss_pred HHHHHHHhhhc
Q 006627 108 VSNALIQMYSE 118 (638)
Q Consensus 108 ~~~~li~~~~~ 118 (638)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 201
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.011 Score=55.83 Aligned_cols=127 Identities=12% Similarity=0.075 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCH
Q 006627 479 TFIGLLNACSHA-GLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSMP---L-----RPNM 545 (638)
Q Consensus 479 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~ 545 (638)
.+..+...|... |++++|.+.|++...-+..... ...+..+...+.+.|++++|.++|++.. . +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444555678777 8999999999988763322222 2456677888999999999999998871 1 1122
Q ss_pred -hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc-----chHHHHHHHHHhc--CCHHHHHHHHHHH
Q 006627 546 -IVWGALLAASKLHKNPSMGEIAATQILEIEPQNY-----GYNVLMSNIYAVA--NRWNDVAGVRRVM 605 (638)
Q Consensus 546 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~--g~~~~A~~~~~~~ 605 (638)
..+...+-.+...||...|...+++..+.+|.-. .....|..++-.. ..+++|+.-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1223334455678999999999999999998522 2334455555432 4566666666544
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.27 Score=50.57 Aligned_cols=112 Identities=21% Similarity=0.179 Sum_probs=70.8
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006627 410 DVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH 489 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 489 (638)
...+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. .+.-|.-+..+|.+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 333444445556666777777777777777777777777777777777776665544322 13446666777777
Q ss_pred cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIK 537 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (638)
.|+.++|.+++.+.. +.. ..+.+|.+.|++.+|.+.--
T Consensus 757 ~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 777777777766553 111 35566677777777666543
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.083 Score=50.17 Aligned_cols=147 Identities=12% Similarity=-0.013 Sum_probs=75.6
Q ss_pred HhcCChHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCC
Q 006627 453 GMHGCGEEALIFFVDMERS---GVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGL 528 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 528 (638)
.+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.-.++..+ +.|. +..+..-..++.-.++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777666642 2233444455555566667777777776666653 2222 1222223345555667
Q ss_pred hHHHHHHHHhC-CCCCC---HhhHHHHHHHHh---------------hcCChHHHHHHHHHHhccCCCCc--------ch
Q 006627 529 LDEAHEMIKSM-PLRPN---MIVWGALLAASK---------------LHKNPSMGEIAATQILEIEPQNY--------GY 581 (638)
Q Consensus 529 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~---------------~~~~~~~A~~~~~~~~~~~p~~~--------~~ 581 (638)
+++|++.+++. ....+ ..++.....+.. ...+.+.-...-..++...|+-. .-
T Consensus 337 ~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~k 416 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAK 416 (486)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHH
Confidence 77777776665 21111 122222211111 11222222222233444555421 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 006627 582 NVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~ 602 (638)
+...+.+|...+++.++.+..
T Consensus 417 FkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhcc
Confidence 567889999999999988864
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0021 Score=60.19 Aligned_cols=128 Identities=12% Similarity=-0.046 Sum_probs=85.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHh---hhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CC-CCCHh
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMV---HGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-------PL-RPNMI 546 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 546 (638)
.|..|...|.-.|+++.|+...+.-. +.+|-.. ....+..+..++.-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555566778888877654322 2233332 2355677888888889999888888764 11 12344
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhcc----C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEI----E--PQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
...+|.++|....++++|+...++-+.+ + -....++..|+.+|...|..++|+.+.++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5566777887778888888887776542 2 1245678889999999999999988766553
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.27 E-value=0.18 Score=47.65 Aligned_cols=253 Identities=12% Similarity=0.057 Sum_probs=166.6
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHH--HhccCchHHHHHHHHHHHHhCCCCcccH--HHHH
Q 006627 344 WNAVISAYA--QAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSL--CTEAGALEMGKWLHTYIEKQGLEVDVIL--KTAL 417 (638)
Q Consensus 344 ~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 417 (638)
|..|-.++. ..|+-..|.+.-.+-... +..|......++.+ -.-.|+++.|.+-|+.|.. .|.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence 444444443 346666666655543321 34555556666654 3457999999999999986 333322 3444
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHH--HHHHHHHHHh---
Q 006627 418 VDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNGI--TFIGLLNACS--- 488 (638)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~~~~--- 488 (638)
.-.-.+.|..+.|..+-++.-.. -.-.+...+...|..|+++.|+++++.-++.. +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44556789999998888765522 33467888999999999999999999876543 344442 2333433321
Q ss_pred ccCcHHHHHHHHHHHhhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHH-H
Q 006627 489 HAGLVTEGKSVFDKMVHGLGLVPKIEHYG-CMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMG-E 565 (638)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A-~ 565 (638)
-..+...|...-.+.. ++.|+...-. .-..+|.+.|+..++-.+++.+ +..|-+..+..+. +.+.|+.... .
T Consensus 241 ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRl 315 (531)
T COG3898 241 LDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRL 315 (531)
T ss_pred hcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHH
Confidence 1224555555544443 5677754332 3347889999999999999998 6677777664443 4456664322 3
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 566 IAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 566 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
+-.+++.++.|++......++.+-...|++..|..--+..
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4455666799999999999999999999998887766554
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.011 Score=52.13 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=115.4
Q ss_pred hHHHHhhhhh--hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhC---
Q 006627 27 FSYTNIINPL--TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNG--- 101 (638)
Q Consensus 27 ~~A~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 101 (638)
++.++.+.+- ..-+.+++.+.-.|.+.-.++.+.+.+++..+.++.....+.+...+.||.+.|...|+...+..
T Consensus 166 ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 166 ESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 5555555444 66678888889999999999999999998777788888888888999999999999999776542
Q ss_pred --CCCChhHHHHHHHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHH
Q 006627 102 --LDGDAYVSNALIQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMI 176 (638)
Q Consensus 102 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 176 (638)
++.+..+.......+.-++++..|...+.+++. .|+..-|.-.-+..-.|+..+|++.++.|++. .|...+-.
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 344445555555667777899999999988876 34555565555666789999999999999984 56666655
Q ss_pred HHHH
Q 006627 177 SMVS 180 (638)
Q Consensus 177 ~ll~ 180 (638)
+++-
T Consensus 324 s~~~ 327 (366)
T KOG2796|consen 324 SVLF 327 (366)
T ss_pred hHHH
Confidence 4443
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0046 Score=58.48 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
..+..+..++.+.+++.+|++...+. .. ++|...+..-..++...|+++.|+..|+++++++|+|-.+...|..+--+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888999999999999999887 33 45788888888999999999999999999999999999999999999888
Q ss_pred cCCHHHH-HHHHHHHhh
Q 006627 592 ANRWNDV-AGVRRVMKE 607 (638)
Q Consensus 592 ~g~~~~A-~~~~~~~~~ 607 (638)
..++.+. .+.|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 8877776 668998854
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.19 E-value=0.0097 Score=48.00 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=67.6
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHh
Q 006627 520 VDLLGRAGLLDEAHEMIKSM----PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG---YNVLMSNIYAV 591 (638)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 591 (638)
.....+.|++++|.+.|+.+ +..| ...+...++.++...+++++|...+++.++++|.++. ++...|-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455678888888887777 2222 3456677888999999999999999999999998754 45666666777
Q ss_pred cCC---------------HHHHHHHHHHHhhcCC
Q 006627 592 ANR---------------WNDVAGVRRVMKEIRV 610 (638)
Q Consensus 592 ~g~---------------~~~A~~~~~~~~~~~~ 610 (638)
... ..+|...|+.+.+.-+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 766 7788888888776554
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.16 E-value=0.0054 Score=56.52 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=69.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHhhHHHHH
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP----NMIVWGALL 552 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~ 552 (638)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+.+ ...| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777888877777776432111 1245556777777888888888887776 2223 255666667
Q ss_pred HHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 553 AASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
..+...|+.++|...++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7788889999999999999999998654
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.12 E-value=0.13 Score=51.67 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=100.5
Q ss_pred HHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCH
Q 006627 93 IHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSE 172 (638)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 172 (638)
-++++.+.|-.|+... +...++-.|.+.+|-++|.+ .|.-..|+++|.+|+--
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------ 674 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------ 674 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH------
Confidence 3566677776677654 34556667888888888754 45555555555554321
Q ss_pred hhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHh
Q 006627 173 VAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIR 252 (638)
Q Consensus 173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 252 (638)
-..+-+...|+.++-+.+...-.+-..+.+ .+ .+....+...|+.++|..+. ..
T Consensus 675 ----D~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-eP---kaAAEmLiSaGe~~KAi~i~------------------~d 728 (1081)
T KOG1538|consen 675 ----DYAQEFLGSGDPKEKKMLIRKRADWARNIK-EP---KAAAEMLISAGEHVKAIEIC------------------GD 728 (1081)
T ss_pred ----HHHHHHhhcCChHHHHHHHHHHHHHhhhcC-Cc---HHHHHHhhcccchhhhhhhh------------------hc
Confidence 011222233333333333322221111100 01 22333444555555555442 23
Q ss_pred CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 006627 253 CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTL 332 (638)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (638)
+|-.+-+.++-+++.. .+..+...+..-+-+...+..|.++|..|-+. .+++..+...++|++|..+
T Consensus 729 ~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhh
Confidence 3444444444433322 22333333333344455556666666655332 4677778888888888888
Q ss_pred HhcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 006627 333 FDGMKSKDVMIWNAVISAYAQAHCIDKAF 361 (638)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 361 (638)
-++.++--...|-...+-++...++++|.
T Consensus 796 Ae~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 796 AEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred hhhCccccccccchHHHHhhhhhhHHHHH
Confidence 88877643333333333344444444443
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0018 Score=46.58 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=49.4
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
..|.+.+++++|.++++++ ...| ++..|......+...|++++|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4567778888888888777 4444 466777778888888999999999999999999876655443
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.45 Score=48.51 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=10.3
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 006627 518 CMVDLLGRAGLLDEAHEMI 536 (638)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~ 536 (638)
.|.+-....|..+.|++.-
T Consensus 1026 ilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHHHHHhchHHHHHHHH
Confidence 3334445566666666653
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.027 Score=50.16 Aligned_cols=50 Identities=8% Similarity=-0.073 Sum_probs=40.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHH
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAG 600 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 600 (638)
+...|.+.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 45678899999999999999999999854 456788999999999985543
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.49 Score=48.77 Aligned_cols=325 Identities=11% Similarity=0.034 Sum_probs=171.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHH---hcCCCchhhHHHHHHHH
Q 006627 244 TVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILR---NGFEFSLAMANALVDMY 320 (638)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~ 320 (638)
..+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+.. -..+++.+.+ ... .....|..+.+--
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 446777777788888888777764432221 444544444444433221 1222222222 112 2334455566666
Q ss_pred HhcCChHHHHHHHhcCCCC--------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627 321 GKCREIRSARTLFDGMKSK--------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392 (638)
Q Consensus 321 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (638)
-..|+.+-|..+++.=+.. +..-+...+.-....|+++....++-.+... .+...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence 6788888888887654322 2223444455556666666666666555432 1111221111 123
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC------CCCCchhHHHHHHHHHhcCCh--------
Q 006627 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA------IYRDICMWNAMMAGYGMHGCG-------- 458 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~~~~-------- 458 (638)
..|..++.+..+.. +. ..+-+.|....+..++-.+.-+- ..+-..........+.+....
T Consensus 589 p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 33444444443311 00 11112222222222221111110 111112222333344433321
Q ss_pred --HHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006627 459 --EEALIFFVDMER-SGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEM 535 (638)
Q Consensus 459 --~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 535 (638)
.+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-++.. -||...|..-+.++...+++++-.++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 111222222221 2323334445555566677788888888766553 37888888888999999999998888
Q ss_pred HHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627 536 IKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 536 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
-+..+ .+.-|.-+..+|.+.|+.++|.+.+-+.-.+ ...+.+|.+.|++.+|.+.-
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 87764 2556666788899999999988776654332 26788899999999988753
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.47 Score=48.38 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMER-SGVKPNGITFIGLLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 503 (638)
.|.+|.+--...|..+.|++.--.+.. ..+-|....|..+.-+-+....+...-+.|-++
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 344444555556777777665443332 234555666666655555444444444444333
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.012 Score=49.30 Aligned_cols=115 Identities=12% Similarity=0.155 Sum_probs=72.7
Q ss_pred HhccCcHHHHHHHHHHHhhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGL--VPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMG 564 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 564 (638)
....++.+.+...++++..-+.- -|+... ..........++.. -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 34566777777777777653211 111111 11222222233322 123555677778899999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCcCCCC
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE-----IRVKKEPG 615 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 615 (638)
...+++++..+|-+...|..+..+|...|+..+|.++|+++.+ -|+.|+|.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 9999999999999999999999999999999999999998853 46666654
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0046 Score=55.51 Aligned_cols=65 Identities=3% Similarity=-0.110 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627 549 GALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE 613 (638)
Q Consensus 549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (638)
..|..++...|++++|...|..+.+-.|++ |..+.-|+.+..+.|+.++|...|+.+.++.+...
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 336667777777777777777777655543 45566777777777777777777777766655443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.98 E-value=0.0012 Score=48.19 Aligned_cols=62 Identities=6% Similarity=-0.043 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 546 IVWGALLAASKLHKNPSMGEIAATQILEI----EPQ---NYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.++..+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777888888888888887753 222 245688899999999999999999887653
No 219
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.91 E-value=0.031 Score=44.32 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=55.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCCh--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC---cccHHHHHHHHH
Q 006627 347 VISAYAQAHCIDKAFELFIHMKVSKVRPNE--VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV---DVILKTALVDMY 421 (638)
Q Consensus 347 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 421 (638)
+..++-..|+.++|+.+|++....|..... ..+..+-..+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 455667778888888888888777755442 244455567777888888888887776542 11 222222333455
Q ss_pred HhcCCHHHHHHHHHc
Q 006627 422 AKCGDVNGAYRLFSE 436 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~ 436 (638)
...|+.++|.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 666777766666543
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.064 Score=47.57 Aligned_cols=136 Identities=10% Similarity=-0.033 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH-----H
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-----C 518 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~ 518 (638)
.-+.++.++.-.|.+.-.+..+.+.++...+-++.....+.+.-.+.||.+.|..+|++..+. .-..+...++ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 334555556666777777778888887654456667777778888888888888888876553 2222222222 2
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 519 MVDLLGRAGLLDEAHEMIKSMP-LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
....+.-++++..|...+.+.. ..| ++...+.-.-...-.|+..+|++..+.+.+..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 2334455667777777777763 222 3333333333333457777888888888888877433
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.81 E-value=0.0064 Score=52.48 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=67.9
Q ss_pred hcHHHHHHHHH-----hCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcc----------------cCchHHHHHHH
Q 006627 37 TRYNSLVTSYI-----KNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQV----------------LMTHLGKEIHG 95 (638)
Q Consensus 37 ~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~~~ 95 (638)
.+|..+++.|. +.|.++=....+..|.+.|+.-|..+|+.||..+=+. .+.+-+.++++
T Consensus 48 ~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~ 127 (228)
T PF06239_consen 48 ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLE 127 (228)
T ss_pred HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHH
Confidence 67777777776 4577777888889999999999999999999876442 24455888899
Q ss_pred HHHHhCCCCChhHHHHHHHhhhcCCC
Q 006627 96 FAIKNGLDGDAYVSNALIQMYSECGS 121 (638)
Q Consensus 96 ~~~~~~~~~~~~~~~~li~~~~~~~~ 121 (638)
+|...|+-||..++..++.++++.+.
T Consensus 128 qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 128 QMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999998888876553
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.81 E-value=0.056 Score=48.18 Aligned_cols=142 Identities=10% Similarity=0.022 Sum_probs=74.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh-HHHHHHHHHH
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVK--PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE-HYGCMVDLLG 524 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~ 524 (638)
....+...|++.+|...|+++...... -.......++.++.+.|+++.|...++...+.+.-.|... .+-.++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344555667777777777776654211 1123455556666677777777777777666543333321 1111111111
Q ss_pred hcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch-----------------HHHHHH
Q 006627 525 RAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY-----------------NVLMSN 587 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~ 587 (638)
.. .... + ......+...+|...++.+++..|+++.. -..++.
T Consensus 91 ~~--~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 91 KQ--IPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HH--HHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--Cccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0000 0 00112233556777777777777776433 235688
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCC
Q 006627 588 IYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.|.+.|.|..|..-++.+.+.-+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHcccHHHHHHHHHHHHHHCC
Confidence 89999999999999999987654
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.77 E-value=0.024 Score=55.25 Aligned_cols=144 Identities=11% Similarity=0.058 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHHH-cCCCCcH-HHHHHHHHHHhcc---------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 457 CGEEALIFFVDMER-SGVKPNG-ITFIGLLNACSHA---------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 457 ~~~~A~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
..+.|+.+|.+... ..+.|+. ..|..+..++... .+..+|.++.++.++ --+-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 34677788888772 2235554 5677777665432 234455666666654 233455566666666677
Q ss_pred cCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCCHHHHHHH
Q 006627 526 AGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN--IYAVANRWNDVAGV 601 (638)
Q Consensus 526 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~ 601 (638)
.|+++.|..+|+++ ...|| ..+|..........|+.++|.+.++++++++|.-..+-..-.+ .|+. ...++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 77788888888877 56665 5666666667777888888888888888888875444433333 3444 445566665
Q ss_pred HH
Q 006627 602 RR 603 (638)
Q Consensus 602 ~~ 603 (638)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
No 224
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.74 E-value=0.45 Score=43.62 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh-hH---HHHHHHHhccCchHHHHHHHHHHHHhC
Q 006627 346 AVISAYAQAHCIDKAFELFIHMKVSKVRPNEV-TM---VGLLSLCTEAGALEMGKWLHTYIEKQG 406 (638)
Q Consensus 346 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 406 (638)
.....+...|++++|.+.|+++... .|+.. .. -.+..++.+.++++.|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3445566778888888888887764 33332 21 234466677888888888888777753
No 225
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.69 E-value=0.015 Score=50.27 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhcc----------------CchHHHH
Q 006627 338 SKDVMIWNAVISAYAQ-----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEA----------------GALEMGK 396 (638)
Q Consensus 338 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 396 (638)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455666666666653 477777888888899999999999999999877542 2357788
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 006627 397 WLHTYIEKQGLEVDVILKTALVDMYAKCGD 426 (638)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 426 (638)
+++++|...|+-||..++..|+..+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999877664
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.022 Score=47.66 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=48.3
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHH-----HhCCCCChhHHH
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI-----KNGLDGDAYVSN 110 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 110 (638)
.....++..+...|+++.|+.++..+.... |.|...+..+|.++...|+...|.+.++.+. +.|++|++.+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 444556666677888888888888888764 5567788888888888888888888877764 357777766543
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.02 Score=44.67 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=62.0
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCC
Q 006627 521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN----YGYNVLMSNIYAVANR 594 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 594 (638)
.++...|+.+.|++.|.+. .+.| ....|+.-.+++.-+|+.++|+.-+++++++.-+. ...|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3556677777777777666 3333 56677777777777888888888888887754332 2356677777888888
Q ss_pred HHHHHHHHHHHhhcCC
Q 006627 595 WNDVAGVRRVMKEIRV 610 (638)
Q Consensus 595 ~~~A~~~~~~~~~~~~ 610 (638)
-++|..-|+..-+-|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888877777655443
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=96.48 E-value=0.14 Score=50.11 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=95.2
Q ss_pred CHHHHHHHHHcCC---CCC---chhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 006627 426 DVNGAYRLFSEAI---YRD---ICMWNAMMAGYGMH---------GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA 490 (638)
Q Consensus 426 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 490 (638)
..+.|..+|.+.. .-| ...|..+..++... ....+|.++.++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567788888766 334 34555555544332 23456777777777765 56777777777777778
Q ss_pred CcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH---hhHHHHHHHHhhcCChHHHH
Q 006627 491 GLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM---IVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~l~~~~~~~~~~~~A~ 565 (638)
++++.|...|++.. .+.|+. ..|........-.|+.++|.+.+++. ...|.. ......+..|..+ ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999998886 456654 45555666667789999999998884 666642 2333333345443 467777
Q ss_pred HHHHHHhccCC
Q 006627 566 IAATQILEIEP 576 (638)
Q Consensus 566 ~~~~~~~~~~p 576 (638)
.+|-+-.+.+.
T Consensus 428 ~~~~~~~~~~~ 438 (458)
T PRK11906 428 KLYYKETESES 438 (458)
T ss_pred HHHhhcccccc
Confidence 77766555443
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.013 Score=55.47 Aligned_cols=110 Identities=13% Similarity=0.017 Sum_probs=78.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCCh
Q 006627 482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNP 561 (638)
Q Consensus 482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 561 (638)
.-...+.+.|++..|..-|++++.-... .+.-+.++..... ..-..++..+...+.+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-----ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhH
Confidence 3345666777777777777776542110 0111111111111 11234666777788899999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 562 SMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 562 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
..|++...++++++|+|..+++.-|.+|...|+++.|+..|+++.+-.+
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999976544
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.6 Score=48.85 Aligned_cols=143 Identities=10% Similarity=0.031 Sum_probs=71.0
Q ss_pred hhHHHhhhhcCChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHH
Q 006627 14 RQCHAHIIKTHFKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLG 90 (638)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 90 (638)
..-.+.+.+.|++++|.+.+-+. .-=..+|.-|....+...-..+++.+.+.|. -+.+.-..||.+|.+.++.+.-
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHH
Confidence 34444555667777777655544 2223455566666666666667777777664 3444455666777776666554
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627 91 KEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMR 164 (638)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (638)
.+..+... .|.. .+-....+..+.+.+-.++|..+-..... +......+ +-..|++++|++.+..|.
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 44433322 1110 01122233333444444444443332222 12222222 223566777777776653
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.35 E-value=0.3 Score=38.50 Aligned_cols=140 Identities=9% Similarity=-0.015 Sum_probs=84.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 532 (638)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++..-+-|.+.| -.....++.++.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcc----
Confidence 3467788888888887764 2333444454444444555666777777654222211 1223344555554443
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 533 HEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 533 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
+.......+.+...+|.-++-.++++.+.+-+..+|....-++.+|.+.|+..++.+++.+.=+.|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445556677788999999999999988765567899999999999999999999999998887764
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.006 Score=44.51 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
.++..+...|...|++++|+..+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555666666666666666666666553
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.25 E-value=1.6 Score=44.22 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=121.7
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627 410 DVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA 486 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 486 (638)
+...|..-+..-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+.|..++....+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556677777777888888888888887655 2334555555555558888888888877765544444443333344
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHhhHHHHH-----HHHh
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAH---EMIKSM-PLRPNMIVWGALL-----AASK 556 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~ 556 (638)
+-..|+++.|..+++.+.+. . |+. ..-..-+....+.|+.+.+. +++... +.+.+......+. -.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56778999999999999874 3 553 22223345567888888888 555444 2222222222222 1234
Q ss_pred hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627 557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN 593 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 593 (638)
..++.+.|..++.++.+..|++-..|..+.......+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5788999999999999999999989988888876665
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.27 Score=44.92 Aligned_cols=116 Identities=10% Similarity=0.079 Sum_probs=61.6
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHH---HHHHHhhcCChHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGA---LLAASKLHKNPSM 563 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~ 563 (638)
....|++.+|...|+.... -.+-+...--.++.+|...|+.+.|..++..++..-....+.. -+....+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456666666666666654 2222334455566666666777777777666643332222222 1222223332222
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
. ..+++-...+|+|...-..++..|...|+.++|.+.+=.+
T Consensus 222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 222 I-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 2233344556766666777777777777777776654444
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.24 E-value=0.91 Score=41.40 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=39.5
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 006627 523 LGRAGLLDEAHEMIKSM-PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA 599 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 599 (638)
+...++.++|...+.+. ...|+ ...+..+...+...++++.|...+..+.+..|.....+..++..+...|+++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 33444555555554444 22222 3344444444444555555555555555555543344444444444444455555
Q ss_pred HHHHHHh
Q 006627 600 GVRRVMK 606 (638)
Q Consensus 600 ~~~~~~~ 606 (638)
..+++..
T Consensus 257 ~~~~~~~ 263 (291)
T COG0457 257 EALEKAL 263 (291)
T ss_pred HHHHHHH
Confidence 5554443
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.18 E-value=1.3 Score=42.78 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhc---cCcHHHHHHHHHHHhhhcCCCCChhHH
Q 006627 443 CMWNAMMAGYGMHGCGEEALIFFVDMERSG---VKPNGITFIGLLNACSH---AGLVTEGKSVFDKMVHGLGLVPKIEHY 516 (638)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~ 516 (638)
.+...++-+|....+++..+++.+.+.... +.-....-....-++-+ .|+.++|.+++..+... ...++++++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 344456667999999999999999998641 11122222334445556 89999999999996654 677888888
Q ss_pred HHHHHHHH----h-----cCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCC-hH---HHHHHH----HHHhc---cC
Q 006627 517 GCMVDLLG----R-----AGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKN-PS---MGEIAA----TQILE---IE 575 (638)
Q Consensus 517 ~~l~~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~----~~~~~---~~ 575 (638)
..+++.|- . ....++|.+.+.+. ...|+..+=..+.......|. ++ +..++- ..+.+ ++
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88887763 2 23577888888887 555654322222222333332 21 222222 11111 22
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 576 PQ-NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 576 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+. +--.+..++.+..-.|++++|.++.++|.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 22 23344578888999999999999999997654
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.08 E-value=0.44 Score=46.92 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--hhHHHHH
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPL--RPNM--IVWGALL 552 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~ 552 (638)
..+-..+..++.+.|+.++|.+.++++.+.+.......+...|+.++...+.+.++..++.+... -|.. ..|...+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33445566777789999999999999987433222445677889999999999999999988731 2433 3344333
Q ss_pred HHHhhcCC---------------hHHHHHHHHHHhccCCCCcc
Q 006627 553 AASKLHKN---------------PSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 553 ~~~~~~~~---------------~~~A~~~~~~~~~~~p~~~~ 580 (638)
-.+...++ -..|.+++.++.+.+|.-+.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 22222222 13467889999999987553
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.07 E-value=1.1 Score=40.82 Aligned_cols=197 Identities=18% Similarity=0.035 Sum_probs=128.9
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC--Cc-hhHHHHHH-H
Q 006627 377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQ-GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR--DI-CMWNAMMA-G 451 (638)
Q Consensus 377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~l~~-~ 451 (638)
..+......+...+....+...+...... ........+......+...+++..+.+.+...... +. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444445555555566555555555442 22344445555555666666666777766655532 11 22222333 6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhc
Q 006627 452 YGMHGCGEEALIFFVDMERSGVKP----NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRA 526 (638)
Q Consensus 452 ~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 526 (638)
+...|+++.|...+.+.... .| ....+......+...++++.+...+..... ..+. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 77888888888888888552 33 234444444556778899999999999886 3333 467778888888889
Q ss_pred CChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 527 GLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 527 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
+++++|...+... ...|+ ...+......+...++.+.+...+++..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998887 44554 455555555555777899999999999999987
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.00 E-value=0.015 Score=34.07 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=18.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
.|..+...+...|++++|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34455556666666666666666666666653
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.8 Score=41.99 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=100.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChH
Q 006627 451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLD 530 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 530 (638)
.....|++.+|...|....+.. +-+......++.+|...|+.+.|..++..+-.. --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 4456778888888888877753 334466677788888888888888888876432 11111122223345566666666
Q ss_pred HHHHHHHhCCCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC--CCcchHHHHHHHHHhcCCHH-HHHHHHHHH
Q 006627 531 EAHEMIKSMPLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP--QNYGYNVLMSNIYAVANRWN-DVAGVRRVM 605 (638)
Q Consensus 531 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 605 (638)
+...+-++....| |...-..+...+...|+.+.|...+-.++..+- ++..+.-.+..++...|.-+ .+..+.++|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5555555554456 667777788888888999988888887777544 46677778888888777333 344444443
No 241
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.91 E-value=3 Score=44.42 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA 391 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (638)
...+..+.+.+++.....++..- ..+...-.....+....|+.++|......+=..| ...+..+..++..+.+.|.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 34444555677777777644332 2344445566667777777777766666654444 2334455556655554443
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=95.89 E-value=0.16 Score=42.20 Aligned_cols=85 Identities=12% Similarity=-0.046 Sum_probs=46.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627 452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE 531 (638)
Q Consensus 452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 531 (638)
+...|++++|..+|+-+.-.+ +-|..-+..|..+|-..+++++|...|.....- . .-|+..+-....++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 345566666666666555433 223334445555555666666666666665431 1 2333334445666666666666
Q ss_pred HHHHHHhC
Q 006627 532 AHEMIKSM 539 (638)
Q Consensus 532 A~~~~~~~ 539 (638)
|+..|...
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 66666655
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.89 E-value=0.013 Score=34.32 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34556666666777777777777777777765
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.14 Score=46.27 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=53.1
Q ss_pred ccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhcCChH
Q 006627 489 HAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRP-NMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 562 (638)
+.|++..|...|...++.+.-.+ ....+.-|+.++...|++++|..+|..+ +..| -+..+..+.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666666665321110 1223334566666666666666666554 2223 2456666666666777777
Q ss_pred HHHHHHHHHhccCCCCcch
Q 006627 563 MGEIAATQILEIEPQNYGY 581 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~ 581 (638)
+|...++++++..|+.+.+
T Consensus 233 ~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 233 EACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHCCCCHHH
Confidence 7777777777777765443
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=1.2 Score=39.43 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=39.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-------CCCCH-hhHHHHHHHHhhcCChHHHHHHHHHHhc----cCCCCcchHHHHH
Q 006627 519 MVDLLGRAGLLDEAHEMIKSMP-------LRPNM-IVWGALLAASKLHKNPSMGEIAATQILE----IEPQNYGYNVLMS 586 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~ 586 (638)
..+.|.+..++++|-..+.+-. ..|+. ..+...+-.+....|+..|...++...+ ..|++......|.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3345555555555555444331 11221 2233333344445566666666666444 3344444555555
Q ss_pred HHHHhcCCHHHHHHH
Q 006627 587 NIYAVANRWNDVAGV 601 (638)
Q Consensus 587 ~~~~~~g~~~~A~~~ 601 (638)
..| ..||.+++.++
T Consensus 236 ~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKV 249 (308)
T ss_pred HHh-ccCCHHHHHHH
Confidence 443 45566655554
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.82 E-value=0.053 Score=52.86 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----hhHHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM----IVWGALLAASKLHKNPSMGEIAATQILEI 574 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 574 (638)
...++.+..+|...|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555566666666665554 444542 23555666666666666666666666665
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=3.1 Score=43.87 Aligned_cols=178 Identities=10% Similarity=0.035 Sum_probs=88.6
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHH----HHcccCchHHHHHHHHHHHhCCCCChhHHHHH
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKA----CAQVLMTHLGKEIHGFAIKNGLDGDAYVSNAL 112 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 112 (638)
..-..-+..+.+.+.++.|+.+-..- ..|..+...+.+. +.+.|++++|...+-+-... ++|+ .+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence 34444555566666666666554322 2233333344333 33556777666655544322 1222 22
Q ss_pred HHhhhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchH
Q 006627 113 IQMYSECGSLVSARYLFDEMPN---RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVD 189 (638)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 189 (638)
|.-|....++..-...++.+.+ .+...-..|+.+|.+.++.++-.+..+.-. .|.- ..-....+..+...+-.+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 3334444444444444444443 344455667777777777777666655433 2211 111334444454555555
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCC
Q 006627 190 LGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQN 238 (638)
Q Consensus 190 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 238 (638)
+|..+-..... ...+ +.-.+-..+++++|.+.++.++-+
T Consensus 481 ~a~~LA~k~~~-------he~v---l~ille~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 481 EAELLATKFKK-------HEWV---LDILLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHhcc-------CHHH---HHHHHHHhcCHHHHHHHHhcCCHH
Confidence 55444333221 1222 223334568899999999988753
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.80 E-value=0.43 Score=48.65 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=80.4
Q ss_pred cCcHHHHHHHHHHHhhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhCC-CC-----CCHhhHHHHHHHHhhcCChH
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVPKIEHYG-CMVDLLGRAGLLDEAHEMIKSMP-LR-----PNMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~~~~~ 562 (638)
..+.+.|.+++..+.++ -|+...|. .-.+.+...|+.++|++.|+++- .+ .....+..+.+.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 44677788888888764 25554443 33456667788888888888652 11 12345566677788889999
Q ss_pred HHHHHHHHHhccCCCCcchH-HHHHHHHHhcCCH-------HHHHHHHHHHhh
Q 006627 563 MGEIAATQILEIEPQNYGYN-VLMSNIYAVANRW-------NDVAGVRRVMKE 607 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~ 607 (638)
+|...+.++.+.+.-+...| ...+-++...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999998777655544 4556678888888 888888887743
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.73 E-value=0.14 Score=41.09 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627 472 GVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD 521 (638)
Q Consensus 472 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 521 (638)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45677777777777777777777777777777777776666666666664
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.71 E-value=0.33 Score=39.41 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=60.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 449 MAGYGMHGCGEEALIFFVDMERSGVKP---NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
.....+.|++++|.+.|+.+...- +. ....-..++.+|.+.+++++|...+++.++-+...|++ .|-..+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 334456677777777777766642 22 22445566666777777777777777776644444433 22223333322
Q ss_pred cCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 526 AGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 526 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
-...+ ..+..+ ... .-.+....|...|+++++..|++..
T Consensus 95 ~~~~~---~~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDE---GSLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhh---hHHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 11111 111111 001 1112356888999999999998753
No 251
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.69 E-value=0.25 Score=46.99 Aligned_cols=126 Identities=12% Similarity=0.018 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHcCC-------C--CCchhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CcH
Q 006627 412 ILKTALVDMYAKCGDVNGAYRLFSEAI-------Y--RDICMWNAMMAGYGMHGCGEEALIFFVDMER----SGVK-PNG 477 (638)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~-p~~ 477 (638)
..|..|...|.-.|+++.|+..-+.-. . ..-..+..+..++.-.|+++.|.+.|+.-.. .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 344455555555666776665543211 0 0113444555555666666666666554332 1211 122
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhh---c-CCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHG---L-GLVPKIEHYGCMVDLLGRAGLLDEAHEMIK 537 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (638)
.+..+|...|.-..++++|+.++.+-..- . ...-....+.+|..+|...|..++|+.+..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444555555555555565555442210 0 011122344455555555555555555443
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.64 E-value=1.6 Score=39.31 Aligned_cols=63 Identities=8% Similarity=-0.017 Sum_probs=48.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCC
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEP 614 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 614 (638)
+...|.+.|.+..|..-++.+++--|+.+ ..+..+..+|.+.|-.++|.+.-+-+. .+.+.++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcCCCCc
Confidence 44667889999999999999999877644 456677888999999999998877554 4443443
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.60 E-value=0.87 Score=36.02 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=77.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccH---HHHHHHHHHhcCCH
Q 006627 351 YAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVIL---KTALVDMYAKCGDV 427 (638)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 427 (638)
+.-.|..++..+++.+...+ .+..-++.++--....-+-+...+.++.+-+ -.|... ...++.+|.+.|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch
Confidence 34467777888888776653 2344455555443333343444444443322 222222 23455666665543
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627 428 NGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL 507 (638)
Q Consensus 428 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 507 (638)
.+ .....+..+...|+-++..+++..+.+.+ .|++.....+..+|.+.|+..++.+++.++-++
T Consensus 86 se--------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek- 149 (161)
T PF09205_consen 86 SE--------------YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK- 149 (161)
T ss_dssp -H--------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-
T ss_pred HH--------------HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence 32 33445677788888888888888887654 788888888999999999999999999888775
Q ss_pred CCC
Q 006627 508 GLV 510 (638)
Q Consensus 508 ~~~ 510 (638)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 553
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.54 E-value=0.94 Score=37.45 Aligned_cols=125 Identities=12% Similarity=0.013 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
..++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+..++++. .++.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555555566666667777666655 345556666666666542 3333344332 0122223345555666
Q ss_pred cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhc-CChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 526 AGLLDEAHEMIKSMPLRPNMIVWGALLAASKLH-KNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 526 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
.+.++++.-++.+++. +...+..+... ++++.|.+.+++ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666666542 11122223333 666666666664 224445655555443
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.18 Score=46.60 Aligned_cols=158 Identities=11% Similarity=0.004 Sum_probs=116.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH----HHHHHHHhcCC
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG----CMVDLLGRAGL 528 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 528 (638)
.-.|+..+|-..++++.+. .|.|...+..-=.+|...|+...-...++++.. .-.|+...|. .+..++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578889999999999986 366777888888899999999999999999886 3355554443 33456678999
Q ss_pred hHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHH
Q 006627 529 LDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 529 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
+++|.+.-++. .+.| |..............|+..++.++.++-...=-. -...|-+.+-.+...+.|+.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988 5544 5566666677777889999999988776542111 1345667777888899999999999
Q ss_pred HHHhhcCCcCC
Q 006627 603 RVMKEIRVKKE 613 (638)
Q Consensus 603 ~~~~~~~~~~~ 613 (638)
++=.-....++
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 86543333333
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.46 E-value=2.9 Score=41.13 Aligned_cols=149 Identities=8% Similarity=-0.108 Sum_probs=82.9
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC--hhH
Q 006627 441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP---NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK--IEH 515 (638)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~ 515 (638)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+......|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577778888888888888888888877643211 2334444555666778888888888777762 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHhhHHHHHHHHhhc------CChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 516 YGCMVDLLGRAGLLDEAHEM-IKSMPLRPNMIVWGALLAASKLH------KNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
...+...+.. ..+..... ........-...+..+....... ++.+++...|+++.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333333333334 788999999999999999988888888887
Q ss_pred HHhc
Q 006627 589 YAVA 592 (638)
Q Consensus 589 ~~~~ 592 (638)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6655
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.45 E-value=2.8 Score=40.83 Aligned_cols=134 Identities=10% Similarity=0.093 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627 442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV 520 (638)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 520 (638)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|++..|.++|+.-... ++.+..--+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455666666666666778888888888777 5566677777777655 46777888888776652 333333334556
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 521 DLLGRAGLLDEAHEMIKSM--PLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
..+.+-++-+.|..+|+.. .+..+ ...|...+..-..-|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677888888888888855 22222 4567777777777888888888888888888874
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.30 E-value=3.9 Score=41.57 Aligned_cols=401 Identities=11% Similarity=0.046 Sum_probs=201.3
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc-ccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHh
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDN-FTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQM 115 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 115 (638)
..|..||.---+....+.+..+++.++.. -|-. .-|......=.+.|..+.+..+|+.... +++.+...|...+.-
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 67777776666666667777788888754 2333 2344444445567888888888888765 467788888777665
Q ss_pred hh-cCCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhc---cc
Q 006627 116 YS-ECGSLVSARYLFDEMPN------RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFA---DV 185 (638)
Q Consensus 116 ~~-~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~ 185 (638)
+. ..|+.+.....|+.... .....|...|..-..++++.....++++..+. |. ..|+.....|. ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhc
Confidence 54 44667777777766543 34567888888888888999999999988763 22 22222222221 11
Q ss_pred ------CchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhccCCCCcc---cHHHHHH-------
Q 006627 186 ------ADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCG-NLAYAKQLFNRLNQNSVV---SWTVMIS------- 248 (638)
Q Consensus 186 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~---~~~~li~------- 248 (638)
...+++.++-....... .....+ ..+......+.+..|... ..+.+-.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~---------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~ 263 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERS---------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK 263 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhh---------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence 11122111111111100 000000 111111111222111110 0000000
Q ss_pred HHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHH
Q 006627 249 GYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRS 328 (638)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (638)
.+............+++-..+ |- . +.+--.+++..+|...+.--.+.|+.+.
T Consensus 264 ~~~~s~~~~~kr~~fE~~Ikr---pY-----------f--------------hvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKR---PY-----------F--------------HVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccc---cc-----------c--------------ccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 000011111111111111110 00 0 0000012234566666777777888888
Q ss_pred HHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHH-HHhccCchHHHHHHHHHHHH
Q 006627 329 ARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLS-LCTEAGALEMGKWLHTYIEK 404 (638)
Q Consensus 329 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~ 404 (638)
+.-+|++..-| =...|-..+.-....|+.+-|..++....+--+ |+......+-. -+-..|+.+.|..+++.+..
T Consensus 316 ~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 316 VFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 88888777654 122333334434444777777777765544322 22222222222 23456789999999988877
Q ss_pred hCCCCcccHHHHHHHHHHhcCCHHHHH---HHHHcCC--CCCchhHHHHHHH-----HHhcCChHHHHHHHHHHHHcCCC
Q 006627 405 QGLEVDVILKTALVDMYAKCGDVNGAY---RLFSEAI--YRDICMWNAMMAG-----YGMHGCGEEALIFFVDMERSGVK 474 (638)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~--~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~m~~~~~~ 474 (638)
.- +--...-..-+....+.|+.+.+. .++.... +.+....+.+.-- +.-.++.+.|..++.++.+. ++
T Consensus 395 e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~ 472 (577)
T KOG1258|consen 395 EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LP 472 (577)
T ss_pred hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CC
Confidence 54 222333333345566777777776 4443322 1122222222222 22245677777777777765 35
Q ss_pred CcHHHHHHHHHHHhcc
Q 006627 475 PNGITFIGLLNACSHA 490 (638)
Q Consensus 475 p~~~~~~~l~~~~~~~ 490 (638)
++...|..++..+...
T Consensus 473 ~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 473 DCKVLYLELIRFELIQ 488 (577)
T ss_pred ccHHHHHHHHHHHHhC
Confidence 5556666666655443
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.27 E-value=0.23 Score=46.45 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--cCCChhhHHHHHHHHhccCchHHHHHH
Q 006627 351 YAQAHCIDKAFELFIHMKVSK--VRPNEVTMVGLLSLCTEAGALEMGKWL 398 (638)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (638)
+....+.++|+..+.+-...- ..-...++..+..+.+..|.++++...
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 345666777777776654321 111223455555666666665555443
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.69 Score=42.90 Aligned_cols=179 Identities=7% Similarity=-0.043 Sum_probs=118.6
Q ss_pred HHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH----HHHHHHHhccCcH
Q 006627 421 YAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITF----IGLLNACSHAGLV 493 (638)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~~ 493 (638)
....|+..+|-..++++.+. |...+.--=.++...|+.+.-...+++.... ..|+...| ..+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34457888888888887733 6677777778899999999999999988754 24444333 3334455688999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-------CCHhhHHHHHHHHhhcCChHHHHH
Q 006627 494 TEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR-------PNMIVWGALLAASKLHKNPSMGEI 566 (638)
Q Consensus 494 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------p~~~~~~~l~~~~~~~~~~~~A~~ 566 (638)
++|++.-++..+ -.+.|.-.-..+...+...|++.++.+++.+-... .....|.. .-.+...+.++.|+.
T Consensus 192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHH
Confidence 999999888875 23345556667778888999999999999876311 11122222 223445689999999
Q ss_pred HHHHHh--ccCCCCcchHH---HHHHHHHhcCCHHHHHHHHH
Q 006627 567 AATQIL--EIEPQNYGYNV---LMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 567 ~~~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~~ 603 (638)
+|.+=+ +++.+|+.... .+-.+......|.+-.++-+
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~ 310 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLAD 310 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhh
Confidence 998765 46677764433 33444555555554443333
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.07 E-value=0.084 Score=44.80 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=84.6
Q ss_pred HHHHhccCcHHHHHHHHHHHhhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHh
Q 006627 484 LNACSHAGLVTEGKSVFDKMVHGLGLVPKI-----EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASK 556 (638)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 556 (638)
..-+...|++++|..-|..++. -.++.. ..|..-..++.+.++++.|++-..+. .+.|. ...+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 4457889999999999999887 444432 33444456788889999998888776 56663 344444456777
Q ss_pred hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH--HHHHHhhcC
Q 006627 557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG--VRRVMKEIR 609 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~ 609 (638)
+...+++|+.-|+++++.+|....+....+.+--......+..+ ++.++++-|
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88889999999999999999876666655555433333333332 455555443
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.86 E-value=0.18 Score=41.71 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=57.8
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHhhHH-HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 515 HYGCMVDLL---GRAGLLDEAHEMIKSM-PLRPNMIVWG-ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 515 ~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
+...|+..+ .+.++.+++..++..+ -..|...... .-.+.+...|++.+|+.+++.+.+-.|..+..--+++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 444444433 5667888888888877 3555543332 2345567788888888888888888888887888888888
Q ss_pred HhcCCHH
Q 006627 590 AVANRWN 596 (638)
Q Consensus 590 ~~~g~~~ 596 (638)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888765
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.84 E-value=3.6 Score=38.80 Aligned_cols=152 Identities=10% Similarity=-0.055 Sum_probs=89.0
Q ss_pred hhcCChhHHHHhhhhh-----------------hcHHHHHHHHHhCCCchhHHHHHHHHHHC--------CCCCCc----
Q 006627 21 IKTHFKFSYTNIINPL-----------------TRYNSLVTSYIKNNKPSSALNIYAFMRKN--------GSEVDN---- 71 (638)
Q Consensus 21 ~~~g~~~~A~~~~~~~-----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~---- 71 (638)
-+.|+++.|..++.++ .-||.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3677888888777776 33444444444443888887777766432 122332
Q ss_pred -ccHHHHHHHHHcccCchH---HHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC-C--CcchHHHHH
Q 006627 72 -FTIPTILKACAQVLMTHL---GKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN-R--DVVSWSTMI 144 (638)
Q Consensus 72 -~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li 144 (638)
.++..++.++...+..+. |..+++.+.... +..+.++-.-+.++.+.++.+.+.+++..|.. . ....+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 245555566666665444 555666664443 33456666667777778888888888887764 2 234455555
Q ss_pred HHHH--hCCCchHHHHHHHHhHHCCCcCCHh
Q 006627 145 RGYH--RGGLPEEALEVMREMRFMDIRPSEV 173 (638)
Q Consensus 145 ~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~ 173 (638)
..+- .......+...+..+....+.|...
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 5442 2234556677777666555555543
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.82 E-value=2.3 Score=43.42 Aligned_cols=160 Identities=16% Similarity=0.074 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCCh-----hhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCccc
Q 006627 343 IWNAVISAYAQAHCIDKAFELFIHMKVSK-VRPNE-----VTMVGLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVI 412 (638)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 412 (638)
....++....-.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.+.++++.+.++ -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 44455566666778888888877754432 21111 123333333332 45778889999988875 45555
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHcCCCC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627 413 LKTAL-VDMYAKCGDVNGAYRLFSEAIYR-------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL 484 (638)
Q Consensus 413 ~~~~l-~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 484 (638)
.|... ...+...|++++|.+.|++.... ....+--+.-++....++++|.+.+.++.+.. .-+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 54433 45677789999999999865521 22345556667778889999999999998864 34445555555
Q ss_pred HHH-hccCcH-------HHHHHHHHHHhh
Q 006627 485 NAC-SHAGLV-------TEGKSVFDKMVH 505 (638)
Q Consensus 485 ~~~-~~~~~~-------~~a~~~~~~~~~ 505 (638)
.+| ...|+. ++|.+++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 544 356666 777777777643
No 265
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.80 E-value=0.45 Score=38.19 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHhhHHHHHHHH
Q 006627 508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRPNMIVWGALLAAS 555 (638)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 555 (638)
...|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566777777777777777777777776655 4444466666666433
No 266
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.65 E-value=0.2 Score=40.60 Aligned_cols=72 Identities=14% Similarity=-0.015 Sum_probs=39.2
Q ss_pred hcCChHHHHHHHHhC-CCCCCHhhH-HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 006627 525 RAGLLDEAHEMIKSM-PLRPNMIVW-GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWN 596 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 596 (638)
+.++++++..+++.+ -+.|+.... ..-.+.+...|++.+|.++++.+.+-.|..+..--+++.++...||.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 456666666666665 233332211 112334555666666666666666666555555566666666666544
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.55 E-value=1 Score=42.27 Aligned_cols=42 Identities=7% Similarity=0.136 Sum_probs=24.9
Q ss_pred HhcCChHHHHHHHhcCCCC------CchhHHHHHHHHHhcCCHHHHHH
Q 006627 321 GKCREIRSARTLFDGMKSK------DVMIWNAVISAYAQAHCIDKAFE 362 (638)
Q Consensus 321 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 362 (638)
....+.+.|+..+.+...+ -..++..+..+.++.|.+++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3456677777776654432 12345556666777777766653
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.46 E-value=0.4 Score=37.68 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=29.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
++...|+.+.|++.|.+.+.. .+-+...|+.-.+++.-+|+.++|+.-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555666666666555543 133445555555555555556555555555554
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.40 E-value=0.088 Score=33.03 Aligned_cols=33 Identities=6% Similarity=0.015 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 579 YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
|..+..++.+|...|++++|+++++++.+..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999876553
No 270
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.39 E-value=0.079 Score=30.85 Aligned_cols=31 Identities=6% Similarity=0.014 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 580 GYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.++..+|.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999998866443
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.39 E-value=0.089 Score=31.23 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 581 YNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.32 E-value=0.66 Score=39.62 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHH
Q 006627 450 AGYGMHGCGEEALIFFVDMERSGVKPNGI-----TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLL 523 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 523 (638)
.-+...|++++|..-|.+.++. ++|... .|..-..++.+.+.++.|++-+.+.++ +.|+. .....-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 3467788888888888888875 344332 233444566788888888888877764 33422 2222334567
Q ss_pred HhcCChHHHHHHHHhC-CCCCC
Q 006627 524 GRAGLLDEAHEMIKSM-PLRPN 544 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p~ 544 (638)
.+..++++|++-++++ ...|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 7778888888888776 44454
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.02 E-value=0.084 Score=30.77 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555566666666666555555
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.89 E-value=4.8 Score=36.40 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=44.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 519 MVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
+.+.|.+.|.+..|..-++++ ..-|+ ...+-.+..+|...|-.++|....+-+-...|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 456788999999999988888 22222 34556677889999999998887766655666654
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.88 E-value=4.1 Score=35.58 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCch-hHHHHHH--HHHhcCChHHHHHHHHHHHHc
Q 006627 410 DVILKTALVDMYAKCGDVNGAYRLFSEAIYRDIC-MWNAMMA--GYGMHGCGEEALIFFVDMERS 471 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m~~~ 471 (638)
-+.+||-|.--+...|+++.|.+.|+....-|+. -|..+=+ ++.-.|+++.|.+-+.+.-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 3567777777777888888888888777655432 2222211 233457777777777666665
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.76 E-value=3.3 Score=34.14 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=22.5
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 006627 381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC 424 (638)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (638)
.++..+...+.......+++.+...+ +.+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555554 34555555666555543
No 277
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.74 E-value=1.9 Score=43.37 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=95.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627 349 SAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN 428 (638)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 428 (638)
+...-.++++.+.+....-.-..--| ......++.-+.+.|..+.|.++... + ..-.+...+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence 34455777887766664211000012 33456677777778888887776432 2 22345667788888
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC
Q 006627 429 GAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG 508 (638)
Q Consensus 429 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 508 (638)
.|.++.++.. +...|..|.......|+++-|.+.+++... +..|+-.|.-.|+.+.-.++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 8888776554 566888888888888888888888877442 455666677777777777776666542 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006627 509 LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP 540 (638)
Q Consensus 509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (638)
-++....++.-.|+.++..+++.+.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 24444555666788888888877764
No 278
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.71 E-value=1.5 Score=44.20 Aligned_cols=157 Identities=13% Similarity=0.034 Sum_probs=88.2
Q ss_pred HHHHhcCCHHHHHHHHH--cCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 006627 419 DMYAKCGDVNGAYRLFS--EAI-YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTE 495 (638)
Q Consensus 419 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 495 (638)
+...-.++++++.+..+ ++. .-+....+.++.-+.+.|.++.|+++.+.-. + -.....+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcCCHHH
Confidence 44455677777655554 111 1123446667777777777777776643321 1 1233456777777
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 496 GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 496 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
|.++.++. ++...|..|.+...+.|+++-|.+.+++.+ -+..|.-.|...|+.+.-.++.+.+.+..
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77654332 356688888888888888888888888764 24445556677777766666665555422
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
-+...-.++.-.|+.++..+++..-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2444445566678888888777643
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.51 E-value=0.14 Score=29.85 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 580 GYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
..|..+|.+|...|++++|+..|++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999998876543
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.43 E-value=15 Score=40.76 Aligned_cols=141 Identities=15% Similarity=0.065 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 006627 416 ALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTE 495 (638)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 495 (638)
-.++.-.+.|.+.+|..++..-...-...|.+...-+.....+++|.-.|+..-+ ....+.+|..+|+|++
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHH
Confidence 3344444556666666655433333334555555556666777777776665332 2234567778888888
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 496 GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 496 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
|..+..++.. +-.--..+-..|+.-+...+++-+|-++..+....|.. .+..+.....+++|..+....-
T Consensus 984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 8888776643 11111223356777788888888888888877434322 1223344445666666655554
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.24 E-value=0.36 Score=43.49 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=70.7
Q ss_pred hcHHHHHHHHHh-----CCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc----------------CchHHHHHHH
Q 006627 37 TRYNSLVTSYIK-----NNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL----------------MTHLGKEIHG 95 (638)
Q Consensus 37 ~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~~~~ 95 (638)
.+|-..+..+.. .+.++=.-..+..|.+.|+.-|..+|..||..+-+.. +.+-+..+++
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 566666666653 4566667778888999999999999999998765432 2334778899
Q ss_pred HHHHhCCCCChhHHHHHHHhhhcCCCh-hHHHHHhccCC
Q 006627 96 FAIKNGLDGDAYVSNALIQMYSECGSL-VSARYLFDEMP 133 (638)
Q Consensus 96 ~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~ 133 (638)
+|..+|+.||..+-..|+.++.+.+-. .+..++.-.|+
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999988877653 23344443443
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=3.3 Score=34.67 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=66.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh-HHHHH--HHHHHhcC
Q 006627 452 YGMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE-HYGCM--VDLLGRAG 527 (638)
Q Consensus 452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g 527 (638)
+.+.+..++|+.-|..+.+.|...=+. ..........+.|+-..|...|+++-.. .-.|.+. -...| ...+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 345667778888887777766432221 1222233456677777777777777654 2222221 11111 12345667
Q ss_pred ChHHHHHHHHhCC--CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 528 LLDEAHEMIKSMP--LRP-NMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 528 ~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
.+++....++-+. -.| ....-..|.-+..+.|++.+|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777666666652 122 233445555566677777777777776665
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.00 E-value=0.15 Score=29.33 Aligned_cols=30 Identities=3% Similarity=-0.042 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 581 YNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
++..++.+|.+.|++++|.+.|+++.+..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 466788888888888888888888876544
No 284
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.89 E-value=0.95 Score=40.95 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=75.1
Q ss_pred HHHHhcCC--CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC------------
Q 006627 330 RTLFDGMK--SKDVMIWNAVISAYAQ-----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG------------ 390 (638)
Q Consensus 330 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 390 (638)
+..|.... ++|-.+|-..+..|.. .+.++-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455554 4466666666666643 4567777888889999999999999999998765432
Q ss_pred ----chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 006627 391 ----ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV 427 (638)
Q Consensus 391 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 427 (638)
+-+-++.++++|...|+-||..+-..|+.++++.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3355788999999999999999999999999988764
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.81 E-value=1.2 Score=37.09 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=75.3
Q ss_pred HHHHHHHHH---HHhccCcHHHHHHHHHHHhhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhCC-CCCCHhhHHHH
Q 006627 477 GITFIGLLN---ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-CMVDLLGRAGLLDEAHEMIKSMP-LRPNMIVWGAL 551 (638)
Q Consensus 477 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 551 (638)
..+...|+. .-...++.+++..++..+. -+.|...... .-...+.+.|++.+|..+|+++. ..|....-..+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344445544 4467889999999999986 4556543322 23456789999999999999993 34555555666
Q ss_pred HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627 552 LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 552 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 601 (638)
+..|.....-..=....+++++..|+ +.... +...+....+...|.+.
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d-~~a~~-Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGAD-PDARA-LVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCC-hHHHH-HHHHHHHhccccchhhh
Confidence 66666555444445566667777664 44444 44444444444445544
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.81 E-value=0.49 Score=43.58 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=45.5
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.++..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|++.|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455666666777777777777777777777777777777777777777777777777654
No 287
>PRK09687 putative lyase; Provisional
Probab=92.70 E-value=8.9 Score=36.06 Aligned_cols=25 Identities=8% Similarity=-0.134 Sum_probs=12.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
.+.+....|+. +|...++++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 45555555555454
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=16 Score=38.67 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=46.6
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcC
Q 006627 144 IRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCG 223 (638)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (638)
|..+.+.+.+++|++..+.-.. ..|... ...+....+..+...|
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~----------------------------------i~kv~~~yI~HLl~~~ 406 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFV----------------------------------IKKVGKTYIDHLLFEG 406 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--Cccccc----------------------------------hHHHHHHHHHHHHhcc
Confidence 5667778888888887765432 222210 2234455666666777
Q ss_pred ChHHHHHHHhccCCCCcccHHHHHHHHHhCCChH
Q 006627 224 NLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEIN 257 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 257 (638)
++++|....-.|...+..-|..-+.-+...++..
T Consensus 407 ~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 407 KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 7777777766666666666655555555555443
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.56 E-value=6.3 Score=33.96 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=55.2
Q ss_pred HHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCCCCC--CHhhHHHHHHHHh
Q 006627 484 LNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-----CMVDLLGRAGLLDEAHEMIKSMPLRP--NMIVWGALLAASK 556 (638)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~ 556 (638)
...+...+++++|..-++..... |.-..+. .|.+.....|.+|+|+..++... .+ .......-...+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 34466778888888777766532 2222222 34456667788888888887653 11 1222333446677
Q ss_pred hcCChHHHHHHHHHHhccCCC
Q 006627 557 LHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~~~p~ 577 (638)
..|+.++|+..|+++++.++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 788888888888888877654
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.50 E-value=8 Score=35.01 Aligned_cols=273 Identities=12% Similarity=0.092 Sum_probs=150.0
Q ss_pred CCCchhhHHHHHHHH-HhcCChHHHHHHHhcCCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCc--
Q 006627 306 FEFSLAMANALVDMY-GKCREIRSARTLFDGMKSK-------DVMIWNAVISAYAQAHCIDKAFELFIHMKV---SKV-- 372 (638)
Q Consensus 306 ~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~-- 372 (638)
-.||+..-|..-..- .+..++++|+.-|.++.+- .....-.+|....+.+++++.+..+.+|.. +.+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 345544444332221 2344677788777766532 223455678888899999999888888742 112
Q ss_pred CCChhhHHHHHHHHhccCchHHHHHHHHHHHHh-----CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-------
Q 006627 373 RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ-----GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR------- 440 (638)
Q Consensus 373 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 440 (638)
.-+..+.+.++...+...+.+.-..+++.-.+. +-..-..+-+.|...|...+.+....+++.++.+.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 224556778887777777766666665543321 11112234456777777777777777777654311
Q ss_pred -C-------chhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHH-----hccCcHHHHHHHHHHHhhh
Q 006627 441 -D-------ICMWNAMMAGYGMHGCGEEALIFFVDMERS-GVKPNGITFIGLLNAC-----SHAGLVTEGKSVFDKMVHG 506 (638)
Q Consensus 441 -~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~ 506 (638)
| ...|..-++.|...++-.....++++.... ..-|-+..... ++-| .+.|.+++|..-|-++.+.
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 246677778888888877777888876542 22354444433 4444 4678888876554444432
Q ss_pred c---CCCCCh--hHHHHHHHHHHhcC----ChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 507 L---GLVPKI--EHYGCMVDLLGRAG----LLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 507 ~---~~~p~~--~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
+ |.+... .-|-.|...+.+.| +.++|.- ....|...+...++.+|.. ++..+-++++..-..--.+
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~ 335 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMD 335 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccc
Confidence 2 222222 22445556666655 1111110 0233555666777777754 4554444444433333333
Q ss_pred CcchHHH
Q 006627 578 NYGYNVL 584 (638)
Q Consensus 578 ~~~~~~~ 584 (638)
+|.+..+
T Consensus 336 DpFIReh 342 (440)
T KOG1464|consen 336 DPFIREH 342 (440)
T ss_pred cHHHHHH
Confidence 4444333
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.46 E-value=3.9 Score=35.13 Aligned_cols=90 Identities=13% Similarity=-0.027 Sum_probs=66.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHhhHH-----HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627 519 MVDLLGRAGLLDEAHEMIKSMPLRPNMIVWG-----ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN 593 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 593 (638)
+...+..+|++++|..-++..-..|....+. .|.......|.+++|...+....+-.=. +.....-|+++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 3456788999999999998763344433333 3445667889999998887755442211 334677899999999
Q ss_pred CHHHHHHHHHHHhhcC
Q 006627 594 RWNDVAGVRRVMKEIR 609 (638)
Q Consensus 594 ~~~~A~~~~~~~~~~~ 609 (638)
+.++|+..|++..+..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998775
No 292
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.44 E-value=0.21 Score=42.01 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhC--------CCCCC-HhhHHHHHHHHhhcC-
Q 006627 493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR---AGLLDEAHEMIKSM--------PLRPN-MIVWGALLAASKLHK- 559 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~- 559 (638)
++.|.+.++.... ..+.|...++.-..++.. .....++.++++++ .+.|+ ..++..+.+++...+
T Consensus 7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4556666666444 233445544444444332 23333444444433 35565 466666666665432
Q ss_pred ---C-------hHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCcC
Q 006627 560 ---N-------PSMGEIAATQILEIEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKEIRVKK 612 (638)
Q Consensus 560 ---~-------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 612 (638)
+ +++|...|+++...+|+|. +|.+. .-.++|-++..++.+++...
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--------~Y~ksLe~~~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNE--------LYRKSLEMAAKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-H--------HHHHHHHHHHTHHHHHHHHHHSSS--
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 1 4556666666666777752 33332 44455666666665555433
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.44 E-value=5.9 Score=39.48 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=25.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC---CHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 518 CMVDLLGRAGLLDEAHEMIKSM-PLRP---NMIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
.+..++.+.|+.++|++.++++ +..| .......|+..+...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444444555555555555554 2112 12233444555555555555555555543
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.32 E-value=8 Score=38.01 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=56.4
Q ss_pred CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 543 PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 543 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
....+|..+...+.+.|+++.|...+.++...++. .+.+....+..++..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34678888999999999999999999999986632 467888889999999999999999988876
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.27 E-value=10 Score=35.74 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCchHH---HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006627 379 MVGLLSLCTEAGALEM---GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI 438 (638)
Q Consensus 379 ~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 438 (638)
+..++.++...+..+. |..+++.+... .+..+.++..-++.+.+.++.+++.+.+.+|.
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3444555555444333 33333334222 12223333344444544555555555555544
No 296
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.00 E-value=4.1 Score=34.57 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHH---HHhccCcHHHHHHHHHHHhhh----cCCCCCh-hHHHHHHHHHHhc----
Q 006627 459 EEALIFFVDMERSGVKPNGITFIGLLN---ACSHAGLVTEGKSVFDKMVHG----LGLVPKI-EHYGCMVDLLGRA---- 526 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~---- 526 (638)
+.|.+.++.-...+ +.|...++.-.. -+++.....++.+++++.+++ ..+.|+. ..+.++..+|...
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45556665544443 444443333333 333333334444444443332 1456765 6777888877544
Q ss_pred CChHHHHHHHHhC--------CCCCCHhhHHHHHHHHh
Q 006627 527 GLLDEAHEMIKSM--------PLRPNMIVWGALLAASK 556 (638)
Q Consensus 527 g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~ 556 (638)
.+..+|.++|+++ ..+|+...|+.-+....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444555555444 36788888876666553
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.94 E-value=0.24 Score=29.38 Aligned_cols=27 Identities=11% Similarity=-0.103 Sum_probs=19.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
+|..+...|...|++++|+..+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677888888888888888888554
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.91 E-value=0.37 Score=44.69 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcC
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHK 559 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 559 (638)
-..-|.++|.+++|+..|..... +.| ++..+..-..+|.+..++..|..-...+ .+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35568999999999999998864 445 7777777788999999998888776655 11 112344555555556678
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 006627 560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV 598 (638)
Q Consensus 560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 598 (638)
+..+|.+-++.+++++|++- .|-..|.+.....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence 89999999999999999953 444445554444433
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.77 E-value=0.46 Score=44.06 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=65.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC
Q 006627 449 MAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG 527 (638)
Q Consensus 449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (638)
..-|.+.|.+++|+..|.+.... .| |++++..-..+|.+...+..|..-+..++.- ...-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999997764 56 8899999999999999999998888877641 1111222333333333345
Q ss_pred ChHHHHHHHHhC-CCCCCHhhH
Q 006627 528 LLDEAHEMIKSM-PLRPNMIVW 548 (638)
Q Consensus 528 ~~~~A~~~~~~~-~~~p~~~~~ 548 (638)
+..+|.+-++.. .+.|+..-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH
Confidence 666666665554 567764443
No 300
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=3.3 Score=36.89 Aligned_cols=18 Identities=11% Similarity=-0.045 Sum_probs=7.8
Q ss_pred HHHHhcCChHHHHHHHHH
Q 006627 450 AGYGMHGCGEEALIFFVD 467 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~ 467 (638)
.+|...+++++|...+.+
T Consensus 39 vafRnAk~feKakdcLlk 56 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLK 56 (308)
T ss_pred HHHHhhccHHHHHHHHHH
Confidence 334444444444444433
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.60 E-value=0.41 Score=27.74 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 580 GYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
.+|..++.+|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988654
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.60 E-value=0.28 Score=26.46 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHH
Q 006627 580 GYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
.....++.++...|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988875
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.52 E-value=7.8 Score=32.80 Aligned_cols=134 Identities=8% Similarity=0.012 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcC--ChHHHHHHHhcCC
Q 006627 260 VRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCR--EIRSARTLFDGMK 337 (638)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 337 (638)
.+.++.+.+.+++|+...+..++..+.+.|+... +..+...++-+|.......+-.+.... -.+-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666677888888888888888888887554 334445555555444333332222211 1344555555554
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627 338 SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ 405 (638)
Q Consensus 338 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (638)
. .+..++..+...|++-+|+++.+.... .+......++.+..+.++...-..+++....+
T Consensus 90 ~----~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 T----AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 355667778888888888888876422 22223345666666666666555555555543
No 304
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.39 E-value=12 Score=34.56 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
++......|...|.+.+|.+..++++.++|-+...+-.|..+|...||--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3344456788999999999999999999999999999999999999998888888887743
No 305
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.35 E-value=0.61 Score=40.42 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=71.3
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 563 (638)
|-..|-+..|.--|.... .+.|+ +..||.|.--+...|+++.|.+.|+.. ...|. ..+...-.-++.-.|++..
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 556677777777666665 45565 367888888888889999999988877 56664 2232222223445678888
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHh--cCCHHHHHHHH
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAV--ANRWNDVAGVR 602 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~ 602 (638)
|.+-+.+.-+.+|+||- .. .|+|.. .=+..+|..-+
T Consensus 152 Aq~d~~~fYQ~D~~DPf-R~--LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF-RS--LWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hHHHHHHHHhcCCCChH-HH--HHHHHHHhhCCHHHHHHHH
Confidence 88888888888888752 22 233333 34556666543
No 306
>PRK09687 putative lyase; Provisional
Probab=91.28 E-value=13 Score=34.97 Aligned_cols=75 Identities=9% Similarity=-0.027 Sum_probs=39.3
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627 408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC 487 (638)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 487 (638)
.++..+....+.++++.|+......+.+.+..++ .....+.++...|.. +|+..+.++.+. .||..+-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3455555555666666666433333333333333 223455666666663 577777776654 44665555555544
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.04 E-value=0.34 Score=27.76 Aligned_cols=31 Identities=6% Similarity=-0.114 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 548 WGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
+..+..++...|+.++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456677788899999999999999988874
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.01 E-value=2 Score=39.76 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=65.5
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHH-----hCCCCChhHHHH
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIK-----NGLDGDAYVSNA 111 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 111 (638)
.++..++..+...++++.+.+.++.+.... +-+...|..++.+|.+.|+...|.+.++.+.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 666778888888999999999999998875 66788999999999999999999998888765 578888888777
Q ss_pred HHHh
Q 006627 112 LIQM 115 (638)
Q Consensus 112 li~~ 115 (638)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 7666
No 309
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.83 E-value=9.2 Score=32.38 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC
Q 006627 92 EIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP 133 (638)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 133 (638)
+....+.+.+++|+...+..+++.+.+.|++.....+++.-.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 344445566677777777777777777777666666555433
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=11 Score=33.41 Aligned_cols=128 Identities=9% Similarity=0.017 Sum_probs=59.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhcc-CcHHHHHHHHHHHhhhcCCC-CChhHHHHHH---HHH
Q 006627 454 MHGCGEEALIFFVDMERSGVKP-----NGITFIGLLNACSHA-GLVTEGKSVFDKMVHGLGLV-PKIEHYGCMV---DLL 523 (638)
Q Consensus 454 ~~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~---~~~ 523 (638)
+..++++|...++..++--... -...+..+...|... .+++.|+..|+..-+-+... .+...-.+++ ..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 4447777777777655421011 111123344444433 56667777776665422111 1111122222 222
Q ss_pred HhcCChHHHHHHHHhC---CCCCC-----HhhHHHHHHHHhhc-CChHHHHHHHHHHhccCCCCcch
Q 006627 524 GRAGLLDEAHEMIKSM---PLRPN-----MIVWGALLAASKLH-KNPSMGEIAATQILEIEPQNYGY 581 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~---~~~p~-----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~ 581 (638)
...+++.+|+.+|++. ....+ ..-|..-...|.-. .|.-.+...+++..+++|.-...
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 4456677777776665 11111 11111111222222 56666667777777777764443
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.74 E-value=2.8 Score=34.29 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=49.0
Q ss_pred HHHHHHHHHH---HhccCcHHHHHHHHHHHhhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhhHH
Q 006627 477 GITFIGLLNA---CSHAGLVTEGKSVFDKMVHGLGLVPKI---EHYGCMVDLLGRAGLLDEAHEMIKSMPLRP-NMIVWG 549 (638)
Q Consensus 477 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~ 549 (638)
....+.|+.. -...++.+++..++..+. -+.|+. .++ -...+...|++++|..+|++....+ ....-.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHH
Confidence 3344444443 456889999999999886 445543 334 3456788999999999999994333 433334
Q ss_pred HHHHHHhh
Q 006627 550 ALLAASKL 557 (638)
Q Consensus 550 ~l~~~~~~ 557 (638)
.+...|..
T Consensus 82 AL~A~CL~ 89 (153)
T TIGR02561 82 ALLALCLN 89 (153)
T ss_pred HHHHHHHH
Confidence 44444444
No 312
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.47 E-value=49 Score=40.20 Aligned_cols=306 Identities=10% Similarity=-0.026 Sum_probs=160.7
Q ss_pred HhcccCChhhHHHHHHHHHHhc--CCCchhhHHHHHHHHHhcCChHHHHHHHhc-CCCCCchhHHHHHHHHHhcCCHHHH
Q 006627 284 ECGFVGGLQLGKWLHAYILRNG--FEFSLAMANALVDMYGKCREIRSARTLFDG-MKSKDVMIWNAVISAYAQAHCIDKA 360 (638)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a 360 (638)
+-.+.+.+..|...++.-.... .......+..+...|..-+++|....+... ..+++ ...-|......|+++.|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence 3334455555555555421000 011223344555577777888777777663 33322 22334455667888888
Q ss_pred HHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHH-HHHHHHHHhcCCHHHHHHHHHcCCC
Q 006627 361 FELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILK-TALVDMYAKCGDVNGAYRLFSEAIY 439 (638)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~ 439 (638)
...|+.+.+.+ ++...+++.++......|.++...-..+-..... ++....+ +.=+.+--+.++++....... .
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 88888887653 3336677777766666777776666555444332 2222222 222444456667766666554 3
Q ss_pred CCchhHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHH----------hh
Q 006627 440 RDICMWNAM--MAGYGMHG--CGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKM----------VH 505 (638)
Q Consensus 440 ~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~ 505 (638)
.+..+|... .....+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++.-++ ..
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455443 22222222 2111122333333321111 11222222222222211111 11
Q ss_pred hcCCCCCh------hHHHHHHHHHHhcCChHHHHHH---HHhC----CCCC-----CHhhHHHHHHHHhhcCChHHHHHH
Q 006627 506 GLGLVPKI------EHYGCMVDLLGRAGLLDEAHEM---IKSM----PLRP-----NMIVWGALLAASKLHKNPSMGEIA 567 (638)
Q Consensus 506 ~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~---~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~ 567 (638)
..++.++. ..|..-+ .+.+....+.+- +++. ...| -..+|....+.....|.++.|...
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl---~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRL---ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred hhccCccccccccchhHHHHH---HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11333322 2222222 222222223222 2222 1222 256888888888999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 568 ATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 568 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.-++.+..+ +.++...++.++..|+-..|+.+++...+.+.
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 999988773 57899999999999999999999998875443
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.43 E-value=1.4 Score=38.12 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=52.4
Q ss_pred HhcCChHHHHHHHHhCCCCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHH
Q 006627 524 GRAGLLDEAHEMIKSMPLRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWND 597 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 597 (638)
.+.|+ ++|.+.|-.+...| +.......+.+|....|.+++++++-+++++.+. |+.++..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 66777666663333 2333344455666678999999999999986543 57889999999999999988
Q ss_pred H
Q 006627 598 V 598 (638)
Q Consensus 598 A 598 (638)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 7
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.33 E-value=28 Score=37.18 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCcccHHHHHHHHHHh---
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQG-LEVDVILKTALVDMYAK--- 423 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 423 (638)
...+.-.|+++.|++.+-+ ..+...+.+.+...+..+.-.+-.+... ..+.... -.|.+.-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445668899999988876 2334556666666655443222211111 2221111 01222556777877775
Q ss_pred cCCHHHHHHHHHcCC
Q 006627 424 CGDVNGAYRLFSEAI 438 (638)
Q Consensus 424 ~~~~~~A~~~~~~~~ 438 (638)
..++.+|.++|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 457778888775544
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.20 E-value=4.5 Score=34.93 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC--CCChhHHHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL--VPKIEHYGCM 519 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l 519 (638)
.+..+..-|++.|+.+.|++.+.++.+....|.. ..+..+++.+...+++..+.....++...... +++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3445566666677777777777777665444443 34566666777777777777776666542111 1111111111
Q ss_pred HH--HHHhcCChHHHHHHHHhC
Q 006627 520 VD--LLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 520 ~~--~~~~~g~~~~A~~~~~~~ 539 (638)
.. .+...+++.+|.+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11 224467777777777665
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.09 E-value=0.88 Score=29.78 Aligned_cols=38 Identities=21% Similarity=0.089 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627 549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
-.+.-++.+.|+++.|.+..+.+++.+|+|..+..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 34556788999999999999999999999877665543
No 317
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=0.87 Score=40.17 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=23.8
Q ss_pred hcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 557 LHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
+..+++.+..-..+++++.|+.......++.++.....+++|+..+++.
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3444444444444455555544444445555555555555554444444
No 318
>PRK10941 hypothetical protein; Provisional
Probab=90.00 E-value=1.5 Score=40.70 Aligned_cols=62 Identities=18% Similarity=0.010 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+.+-.++.+.++++.|.++.+.++.+.|+++.-+...|-+|.+.|.+..|..-++...++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 44556777888888888888888888888888888888888888888888888877765544
No 319
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.94 E-value=14 Score=32.96 Aligned_cols=154 Identities=13% Similarity=0.183 Sum_probs=79.8
Q ss_pred HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCcCCChh-hHHHHHHHHhccCchHH
Q 006627 320 YGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKV----SKVRPNEV-TMVGLLSLCTEAGALEM 394 (638)
Q Consensus 320 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~-~~~~ll~~~~~~~~~~~ 394 (638)
+.-.+.+++|.++|.+ -...|--..+++.|=..|-+..+ .|-+.|.. +|.-.-. |.+.+++++
T Consensus 24 fgg~~k~eeAadl~~~-----------Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~e 91 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYER-----------AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEE 91 (288)
T ss_pred cCCCcchHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHH
Confidence 3344566666666644 23455555666666555555422 22222222 2222222 233335555
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHHc--
Q 006627 395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH-GCGEEALIFFVDMERS-- 471 (638)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~-- 471 (638)
|...++. -++.|...|++..|-....+ +...|-.. .++++|+..|++.-+-
T Consensus 92 Av~cL~~---------------aieIyt~~Grf~~aAk~~~~-----------iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 92 AVNCLEK---------------AIEIYTDMGRFTMAAKHHIE-----------IAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHH---------------HHHHHHhhhHHHHHHhhhhh-----------HHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 5544433 34567777777776654322 22333222 4566666666665431
Q ss_pred CCCCc---HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627 472 GVKPN---GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512 (638)
Q Consensus 472 ~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 512 (638)
|-..+ ...+.-+...-...+++.+|+++|++.... .+..+
T Consensus 146 ~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~-s~~n~ 188 (288)
T KOG1586|consen 146 GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS-SLDNN 188 (288)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccch
Confidence 11111 123444444456788999999999998874 44444
No 320
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.86 E-value=0.28 Score=45.64 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=54.7
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627 525 RAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
..|.++.|++.+... +..| ....+..-..++...+....|++-+..+++++|+.+.-|-.-+.+..-+|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345566666666555 3333 23333344455566667777777777777777777777777777777777777777777
Q ss_pred HHHhhcCC
Q 006627 603 RVMKEIRV 610 (638)
Q Consensus 603 ~~~~~~~~ 610 (638)
....+.++
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 76655444
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.91 E-value=15 Score=33.28 Aligned_cols=156 Identities=8% Similarity=0.046 Sum_probs=98.3
Q ss_pred chHhhhhHHHhhh-hcCChhHHHHhhhhh------------hcHHHHHHHHHhCCCchhHHHHHHHHHHC---CC--CCC
Q 006627 9 NLEQTRQCHAHII-KTHFKFSYTNIINPL------------TRYNSLVTSYIKNNKPSSALNIYAFMRKN---GS--EVD 70 (638)
Q Consensus 9 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~--~~~ 70 (638)
|+.+-|+--++-+ +..++++|+.-|+++ .+...+|....+.+++++..+.|.+|... .+ .-+
T Consensus 25 dVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred CcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666555433 445899999999987 55567888889999999999998888532 11 223
Q ss_pred cccHHHHHHHHHcccCchHHHHHHHHHHHhC-CCCC----hhHHHHHHHhhhcCCChhHHHHHhccCCC--------C--
Q 006627 71 NFTIPTILKACAQVLMTHLGKEIHGFAIKNG-LDGD----AYVSNALIQMYSECGSLVSARYLFDEMPN--------R-- 135 (638)
Q Consensus 71 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-- 135 (638)
....++++.......+.+.....++.-++.- -..+ ..+-+.|-..|...|++....++++++.+ .
T Consensus 105 EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~ 184 (440)
T KOG1464|consen 105 EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ 184 (440)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhh
Confidence 4466777776666666665555554433210 0011 12334566667777777777777766542 0
Q ss_pred -----CcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627 136 -----DVVSWSTMIRGYHRGGLPEEALEVMREMR 164 (638)
Q Consensus 136 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (638)
=...|..=|..|..+.+-.+...++++..
T Consensus 185 kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 185 KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 12356666777777777777777777654
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.54 E-value=0.93 Score=27.68 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 580 GYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.++..|+.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998864
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.44 E-value=7 Score=38.48 Aligned_cols=121 Identities=13% Similarity=-0.022 Sum_probs=62.7
Q ss_pred HhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627 453 GMHGCGEEALIFFVDMER-SGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE 531 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 531 (638)
...|+...|-+-+..... ..-.|+... .........|+++.+...+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 345565555443333332 212233222 223334566777777766666543 233344556666666666777777
Q ss_pred HHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 532 AHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 532 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
|...-.-| +. -.++.............|-++++...+++.+.++|.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 77666655 21 123333333333334455666777777777766664
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.29 E-value=1.6 Score=32.61 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=36.7
Q ss_pred CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCH-HHHHHHHHHH
Q 006627 544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNIYAVANRW-NDVAGVRRVM 605 (638)
Q Consensus 544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 605 (638)
|......+...+...|++++|...+-.+++.+|+ +......+..++...|.- .-+.++-++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566666666777777777777777777776654 355666777777777663 3444444444
No 325
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.05 E-value=6.4 Score=33.98 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHcCCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH---H
Q 006627 412 ILKTALVDMYAKCGDVNGAYRLFSEAIYRD------ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFI---G 482 (638)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~ 482 (638)
..+..+.+.|.+.|+.+.|.+.|.++.... ...+-.+++.....+++..+...+.+....--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455667778888888888888887766442 2456667777888888888888877766432222222221 2
Q ss_pred HHH--HHhccCcHHHHHHHHHHHhh
Q 006627 483 LLN--ACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 483 l~~--~~~~~~~~~~a~~~~~~~~~ 505 (638)
... .+...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 23567889999888877765
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.94 E-value=3.3 Score=36.99 Aligned_cols=67 Identities=7% Similarity=-0.087 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhhcCChH-------HHHHHHHHHhccC--CC----CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627 546 IVWGALLAASKLHKNPS-------MGEIAATQILEIE--PQ----NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK 612 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 612 (638)
..+..+.+.|...|+.+ .|...|+++.+.+ |. ......++|.+..+.|++++|.+.|.++...+-..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 34455566676666644 4555555555432 22 24577889999999999999999999997654433
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.91 E-value=0.94 Score=25.21 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 581 YNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
.+..++.++...|++++|...++...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 328
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.87 E-value=24 Score=33.53 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHHHc--c----cCchHHHHHHHHHHHhC
Q 006627 53 SSALNIYAFMRKNGSEVDNFTIPTILKACAQ--V----LMTHLGKEIHGFAIKNG 101 (638)
Q Consensus 53 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~ 101 (638)
+..+.+++.|.+.|..-+..+|.+..-.... . .....+..+++.|++..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 3445566666666665555554443322222 1 12334556666666553
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.55 E-value=41 Score=35.47 Aligned_cols=212 Identities=12% Similarity=0.045 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-cCCHHHHHHHHHcCCCC-CchhHHHHHHHHHh----cCChHHHHHH
Q 006627 391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK-CGDVNGAYRLFSEAIYR-DICMWNAMMAGYGM----HGCGEEALIF 464 (638)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~ 464 (638)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|....+. .+..+-.+..+|.. ..+.+.|..+
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 4455666666665555 3333322222222222 13455666666554422 23333333333322 2366777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH---Hh----cCChHHHHHHHH
Q 006627 465 FVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL---GR----AGLLDEAHEMIK 537 (638)
Q Consensus 465 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~ 537 (638)
+.+..+.| .|-...-...+..+.. ++++.+.-.+..+.+- +.+-....-..+.... .. ..+.+.+...+.
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 77777776 4432222222333333 5565555555544432 3322111111111111 11 125556666666
Q ss_pred hCCCCCCHhhHHHHHHHHhhc----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CCHHHHHHHHHHHhhcC
Q 006627 538 SMPLRPNMIVWGALLAASKLH----KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA---NRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 538 ~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 609 (638)
+...+-+......+...|... .+++.|...+.++-+.. +.....++..+-.- .++..|.+++++..+.+
T Consensus 464 ~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 464 RAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 664444555555565555433 36788888888887766 56677777765432 12688888888876543
No 330
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.50 E-value=0.65 Score=38.57 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=10.3
Q ss_pred CCHhhHHHHHHHhcccCc
Q 006627 170 PSEVAMISMVSLFADVAD 187 (638)
Q Consensus 170 p~~~t~~~ll~~~~~~~~ 187 (638)
++...|..+++.+...+.
T Consensus 123 ~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 123 DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SSSHHHHHHHHHHCTSTC
T ss_pred CcHHHHHHHHHHHHhcCc
Confidence 445666666666655443
No 331
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.41 E-value=0.37 Score=28.09 Aligned_cols=29 Identities=10% Similarity=-0.175 Sum_probs=24.6
Q ss_pred cccCCcchHhhhhHHHhhhhcCChhHHHH
Q 006627 3 IKNGFLNLEQTRQCHAHIIKTHFKFSYTN 31 (638)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 31 (638)
|+..|.|...|+.|..+|...|++++|++
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 45566799999999999999999999863
No 332
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.33 E-value=46 Score=35.76 Aligned_cols=78 Identities=6% Similarity=-0.068 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCC
Q 006627 211 IATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGG 290 (638)
Q Consensus 211 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 290 (638)
....-+..+.+.++++....++.. ...+.........+....|+.++|......+-..|. .....+..++..+.+.|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 334444455566777766663322 223444445566677777777777666666654442 234455555555544443
No 333
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.95 E-value=23 Score=37.28 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=89.6
Q ss_pred HHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC---------c-hhHHHHHHHHHhcCChHHHH
Q 006627 397 WLHTYIEKQGLEVD---VILKTALVDMYAKCGDVNGAYRLFSEAI-YRD---------I-CMWNAMMAGYGMHGCGEEAL 462 (638)
Q Consensus 397 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~---------~-~~~~~l~~~~~~~~~~~~A~ 462 (638)
.++.+|+.+--.|+ ..+...++-.|....+++...++.+.+. -|| + ..|.-.+.--.+-|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 34455554432333 2333444445555555666555555443 111 1 11222222223345667777
Q ss_pred HHHHHHHHcC--CCCcHHH-----HHHH--HHHHhccCcHHHHHHHHHHHhhhcCCCCChhH---HHHH-----------
Q 006627 463 IFFVDMERSG--VKPNGIT-----FIGL--LNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH---YGCM----------- 519 (638)
Q Consensus 463 ~~~~~m~~~~--~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l----------- 519 (638)
...-.|.+.. +.||... |.-+ -..|...+..+.|.+.|++.. .+.|+... +..|
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccch
Confidence 7666655432 3455432 2211 122445566677777777764 45554332 1111
Q ss_pred ----------HHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627 520 ----------VDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 520 ----------~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
-..+.+.|..++-.++|+- -.++.+..-.+|+.+|.++.+.++++.|.....-..+.
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~me 407 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTME 407 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHH
Confidence 1223444444444444432 12345566788999999999999999987544333333
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.35 E-value=63 Score=36.38 Aligned_cols=125 Identities=10% Similarity=0.053 Sum_probs=64.4
Q ss_pred CChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhc----ccCChhhHHHHH
Q 006627 223 GNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECG----FVGGLQLGKWLH 298 (638)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~ 298 (638)
++++.|+.-+..+. ...|...++.--+.|-+.+|+.++ +|+...+..+..+|+ ....++.|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56667766665554 334555566556677788887765 466666655554443 233444443333
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-Cchh--HHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 299 AYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMI--WNAVISAYAQAHCIDKAFELFIHM 367 (638)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~~~~~~a~~~~~~m 367 (638)
+..=+. ...+.+|..+|+|++|..+-.++... +... -..|+..+...++.-+|-+++.+.
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 322111 12344555556666666555555433 2111 134455555555555555555443
No 335
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.81 E-value=0.79 Score=44.94 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=66.5
Q ss_pred HHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCC
Q 006627 484 LNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGC-MVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKN 560 (638)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 560 (638)
+......+.++.|..++.++++ +.|+...|.. -..++.+.+++..|+.-+.++ ...|. ...|..-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4455667778888888888874 4565444332 236677778887777766555 44553 3444444456666777
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 561 PSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
+.+|...++....+.|+++.+...+-.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 7888888888888888876665555444
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.78 E-value=1.5 Score=26.70 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=16.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
+++.+...+...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666666654
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.56 E-value=7.7 Score=36.02 Aligned_cols=96 Identities=19% Similarity=0.250 Sum_probs=58.9
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-C--------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627 406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-R--------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN 476 (638)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 476 (638)
|.+....+...++..-....+++.+..++-++.. | ...+|-.+ +-.-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 4444455555555555555666666666544431 1 11222222 222356677777777777788888
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
..++..++..+.+.+++.+|..+...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888888887777766655
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.55 E-value=41 Score=33.49 Aligned_cols=120 Identities=9% Similarity=0.006 Sum_probs=73.3
Q ss_pred hcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHH
Q 006627 182 FADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINE 258 (638)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 258 (638)
-...|++..|.+-.....+..+. ++.........+...|+++.+...+..... ....+...+++...+.|+++.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 33556766665555555555444 333334444556677888888887766553 445567778888888888888
Q ss_pred HHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhc
Q 006627 259 GVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNG 305 (638)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 305 (638)
|..+-.-|....+. +..............|-++++.-.|+.+...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888888766543 22222222223334555677777776665443
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.38 E-value=5.4 Score=29.73 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV 520 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 520 (638)
++.+-++.+....+-|++......+++|.+.+++..|.++++-.+.+ ...+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 45555666666678888888888888898888898898888877653 222444565554
No 340
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.01 E-value=46 Score=33.58 Aligned_cols=47 Identities=13% Similarity=-0.055 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
.+....+..++.++.|...-...+..+..-|....++++|++++..+
T Consensus 185 ~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 185 KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 34444444444443333333334444444455555555555555533
No 341
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.73 E-value=2.8 Score=42.27 Aligned_cols=100 Identities=18% Similarity=0.074 Sum_probs=72.3
Q ss_pred hccCcHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHH
Q 006627 488 SHAGLVTEGKSVFDKMVHGLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~ 563 (638)
...|+...|.+.+..+. ...|. ....-.|...+.+.|...+|..++... . ....+.++..+.+++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 45788888888887775 33442 233445667777888888888877654 2 23345677778888888899999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
|++.++++++++|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998888777655543
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.53 E-value=5.1 Score=30.21 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD 521 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 521 (638)
+..+-++.+....+-|++......+++|.+.+++..|.++++-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4445555666667788898899999999999999999999988876433 33336666654
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.38 E-value=5.6 Score=29.65 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006627 53 SSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQ 114 (638)
Q Consensus 53 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 114 (638)
-++.+-++.+.....-|++....+.|++|.+.+|+..|.++++.++... ..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3444555555566667777777777777777777777777777665332 123344554443
No 344
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=84.32 E-value=45 Score=32.93 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSK---DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE 388 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (638)
..|+.-|...|+..+|...++++.-| ....+.+++.+.-+.|+-...+.+++..-..|+ .|.+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 46778888899999999999988766 456788888888888888888888887766553 344455444433
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.26 E-value=2 Score=23.67 Aligned_cols=32 Identities=16% Similarity=-0.047 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
..+..+...+...|+++.|...++++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667788889999999999999999998874
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.97 E-value=2.3 Score=26.55 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 583 VLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
..|+.+|...|+.+.|+++++.+.+.+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999887554
No 347
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.68 E-value=26 Score=29.67 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=54.1
Q ss_pred HhcCCHHHHHHHHHcCCCCCchhHHHHHH-----HHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHH--HHHHhccCcH
Q 006627 422 AKCGDVNGAYRLFSEAIYRDICMWNAMMA-----GYGMHGCGEEALIFFVDMERSGVKPNGI-TFIGL--LNACSHAGLV 493 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~~~~ 493 (638)
.+.++.++|+.-|..+.+.+--.|..|.. .....|+...|+..|++.-.-...|-.. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455566666665555544444433322 2344555666666666555432222221 11111 1223455555
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 494 TEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 494 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
+....-.+.+... +.+.....-..|.-+-.+.|++.+|.++|..+
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 5555555544432 22223333344445555566666666666554
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.58 E-value=17 Score=27.46 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=62.5
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 006627 86 MTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRF 165 (638)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (638)
..++|..|-+.+...+ .....+--..+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 5677888888877665 2233344445666788999999999999998899999877654 466777777777777877
Q ss_pred CCCcCCHhhH
Q 006627 166 MDIRPSEVAM 175 (638)
Q Consensus 166 ~~~~p~~~t~ 175 (638)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 5555555
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.31 E-value=68 Score=34.26 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=89.2
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCC---cccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhc
Q 006627 42 LVTSYIKNNKPSSALNIYAFMRKNGSEVD---NFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSE 118 (638)
Q Consensus 42 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 118 (638)
=++.+.+.+.+++|++.-+.... ..|. .......+..+...|+++.|-...-.|.. .+...|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 35566778888888877665542 2332 23455566667777888887777776653 344555555555555
Q ss_pred CCChhHHHHHhccCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHH
Q 006627 119 CGSLVSARYLFDEMPN-RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHAC 197 (638)
Q Consensus 119 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 197 (638)
.++......++-.-+. -+...|..++..+.. .+...-.++..+. +++...-..++++. . ..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W-----p~~Lys~l~iisa~--~----------~q 497 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW-----PGHLYSVLTIISAT--E----------PQ 497 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC-----ChhhhhhhHHHhhc--c----------hH
Confidence 5554443333322222 245678888887776 3333333332221 22222222222211 0 11
Q ss_pred HHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCC
Q 006627 198 VVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNS 239 (638)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 239 (638)
..+... +......|+..|...+++..|.+++-...+++
T Consensus 498 ~~q~Se----~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 498 IKQNSE----STALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHhhcc----chhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 111111 22334457777888888888887776666544
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.19 E-value=4.7 Score=35.30 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
.+..+..+.+.+..++|+...+.- +.+| |......++..++..|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566788889999999887654 5566 566667788889999999999999999999999854
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.19 E-value=17 Score=27.35 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=40.9
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 006627 418 VDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFI 481 (638)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 481 (638)
+..+...|++++|..+.+....||...|.+|.. .+.|-.+.+..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344667788888888888877778777766643 35566666666666777766 55554443
No 352
>PRK12798 chemotaxis protein; Reviewed
Probab=83.12 E-value=50 Score=32.55 Aligned_cols=179 Identities=11% Similarity=0.103 Sum_probs=90.8
Q ss_pred cCCHHHHHHHHHcCCCC----CchhHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCcHH
Q 006627 424 CGDVNGAYRLFSEAIYR----DICMWNAMMAGY-GMHGCGEEALIFFVDMERSGVKPNG----ITFIGLLNACSHAGLVT 494 (638)
Q Consensus 424 ~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~ 494 (638)
.|+..+|.+.+..+... ....+-.|+.+- ....++.+|+++|++..-. -|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 35556666655555422 223344444432 3344666777777665532 3322 22333344556777777
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHH-HHHHHHhc---CChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHH
Q 006627 495 EGKSVFDKMVHGLGLVPKIEHYGC-MVDLLGRA---GLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQ 570 (638)
Q Consensus 495 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 570 (638)
++..+-....++|...|-...|.. +...+.+. -..+.-..++..|.-.-....|..+.......|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 776666666665554554333332 22222222 23344444455553222345666666777777887777777777
Q ss_pred HhccCCCCcchHHHH-----HHHHHhcCCHHHHHHHHHHH
Q 006627 571 ILEIEPQNYGYNVLM-----SNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 571 ~~~~~p~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~ 605 (638)
+..+.+.+ ..-... +-+-.-..++++|.+.++.+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 77765331 122222 22223344566666655554
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.72 E-value=1.3e+02 Score=37.01 Aligned_cols=26 Identities=8% Similarity=-0.189 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHH
Q 006627 561 PSMGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 561 ~~~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
.++-.+.|+.+.+..|.....++.++
T Consensus 1771 s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1771 SKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHHHHHHHcccccCceeeHH
Confidence 35566777777777776556666665
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.47 E-value=18 Score=33.93 Aligned_cols=54 Identities=19% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVKPNG---ITFIGLLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 503 (638)
|.-+..+.|+..+|.+.++.+.+. .|-. .....++.+|....-+.+...++-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555667777777777766554 2211 23445666666665555555555444
No 355
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.31 E-value=1.5 Score=36.41 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=61.3
Q ss_pred HHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchH
Q 006627 76 TILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEE 155 (638)
Q Consensus 76 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 155 (638)
.++..+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777788888888888888877667788999999999999888888888884433 333445666666677777
Q ss_pred HHHHHHHh
Q 006627 156 ALEVMREM 163 (638)
Q Consensus 156 a~~~~~~m 163 (638)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77666654
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.95 E-value=78 Score=33.97 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=42.5
Q ss_pred CChHHHHHHHhccCC-------CCcccHHHHHHHHH--hCCChHHHHHHHHHHHHcC---------ccCChHhHHHHHHH
Q 006627 223 GNLAYAKQLFNRLNQ-------NSVVSWTVMISGYI--RCNEINEGVRLFAEMIEEN---------VFPSEITILSLIIE 284 (638)
Q Consensus 223 g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~---------~~p~~~~~~~ll~~ 284 (638)
++...|.+.++.+.. +.+..+-.++.+.. +.+..+++.+.++.+.... ..|-..++..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 566666666655442 11222333333333 3455677777777664322 13455566677766
Q ss_pred hcc--cCChhhHHHHHHHHH
Q 006627 285 CGF--VGGLQLGKWLHAYIL 302 (638)
Q Consensus 285 ~~~--~~~~~~a~~~~~~~~ 302 (638)
++. .|+++.+...++.+.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 554 566667766665554
No 357
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.91 E-value=9.2 Score=35.56 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=65.6
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-Cc-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhh
Q 006627 305 GFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DV-----MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVT 378 (638)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 378 (638)
|.+.+..+...++..-....+++.+...+-++... +. .+-...++. +-.-++++++.++..=.+-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 33344444444444444456666666666555421 11 111222333 334567788888888888899999999
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhC
Q 006627 379 MVGLLSLCTEAGALEMGKWLHTYIEKQG 406 (638)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 406 (638)
+..+|+.+.+.+++..|.++.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988877776654
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.65 E-value=68 Score=32.44 Aligned_cols=141 Identities=10% Similarity=0.039 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC------hhHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK------IEHYG 517 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~ 517 (638)
.|..++++|... ..++-..+|+++.+.. -.|...-..|+..|.+ ++.+.+..+|.++..+ +.|. .+.|.
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWe 175 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWE 175 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHH
Confidence 344444555444 3355555666655543 1222223333333333 5566666666666542 2221 12233
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 518 CMVDLLGRAGLLDEAHEMIKSM----PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
.+.... ..+.+.-..+..+. +..--...+..+..-|....|+.+|++++..+++.+..|..+.-.++.-+..
T Consensus 176 KL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 176 KLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 322211 23445555555444 2222334444555667778899999999999999888776666555555444
No 359
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.41 E-value=50 Score=30.79 Aligned_cols=111 Identities=10% Similarity=0.142 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHH-cCccCChHhHHHHHHHhcc-cC-ChhhHHHHHHHHHH-hcCCCchhhHHHHHHHHHhcCChHHHHH
Q 006627 256 INEGVRLFAEMIE-ENVFPSEITILSLIIECGF-VG-GLQLGKWLHAYILR-NGFEFSLAMANALVDMYGKCREIRSART 331 (638)
Q Consensus 256 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (638)
..+|+++|+.... ..+.-|..+...+++.... .+ ....--++.+.+.. .+-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555555553222 2344555666666655544 11 12222233333332 2345666677777777778888887777
Q ss_pred HHhcCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 006627 332 LFDGMKS-----KDVMIWNAVISAYAQAHCIDKAFELFIH 366 (638)
Q Consensus 332 ~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 366 (638)
+++.... .|...|..+|......|+..-...+..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 7776543 3667778888877777776655444443
No 360
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.15 E-value=23 Score=36.32 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKS 538 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~ 538 (638)
-|..|.++....|++..|.+.|.+
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHh
Confidence 344455555555555555555444
No 361
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.08 E-value=77 Score=33.49 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhCCCCCCHhhHHHHHHHHh----hcCChHHH
Q 006627 492 LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR---AGLLDEAHEMIKSMPLRPNMIVWGALLAASK----LHKNPSMG 564 (638)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A 564 (638)
+.+.|..++.+..+. |. |+...+ +..++.. ..+...|.++|..+...-.......+...+. ...+.+.|
T Consensus 308 d~~~A~~~~~~aA~~-g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-GN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-CC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 455566666666542 22 222221 2222221 1345566666666522222222222222221 22356777
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhhcCC
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 610 (638)
...++++-+.++ +.+...++..+.-- ++++.+.-.+..+.+.+.
T Consensus 384 ~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 777777777662 33333333332222 666666666666655544
No 362
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.87 E-value=1.1e+02 Score=34.58 Aligned_cols=254 Identities=8% Similarity=-0.102 Sum_probs=112.2
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 006627 331 TLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD 410 (638)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (638)
.+...+.++++..-...+..+.+.+.. .+...+..... .++...-...+.++...+........+..+.. .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 444444555665555555555555543 33343434332 22222222222333222111111122222222 244
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 006627 411 VILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA 490 (638)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 490 (638)
..+-...+.++...+.. ....+...+..+|...-...+.++...+..+. +.... -.++...-...+.++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 44444455555443211 12233344445565555555555555444322 11121 145555555555555555
Q ss_pred CcHHH-HHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHH
Q 006627 491 GLVTE-GKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAAT 569 (638)
Q Consensus 491 ~~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 569 (638)
+..+. +...+..+.. .++...-...+.++...|..+.+...+..+-..++...-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2333444433 245556666666676666655443333333224455455555555555543 33445544
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 570 QILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 570 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
.+++ +|+ ..+....+.++.+.+.-..+...+..+.
T Consensus 845 ~~L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DPH-LDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4443 222 4455555555555432334555554443
No 363
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=79.61 E-value=71 Score=32.03 Aligned_cols=232 Identities=7% Similarity=0.026 Sum_probs=116.8
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCC
Q 006627 41 SLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECG 120 (638)
Q Consensus 41 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 120 (638)
.-|+++...| +.++..+-...... ++...+.....++....+......+.+.+. .++..+......++...+
T Consensus 43 AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 43 AHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCC
Confidence 3377777777 56777776666432 333344443344433333322333333332 456667788888888887
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHH
Q 006627 121 SLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVR 200 (638)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (638)
+......+...+..++.......+.++...+. .+...+....+ .++...-...+.++...+..+....+...
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~a--- 186 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLY--- 186 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHH---
Confidence 77666666666665666555555566655432 23334444433 45555556666666655554333332211
Q ss_pred hccCCCCchhHHHHHHHHHHhcCChHHHHHHHhc-cCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHH
Q 006627 201 NCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNR-LNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITIL 279 (638)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (638)
-.+. ++.+...-+.+....|. ..|...+.. ...++....-.+...+...|. .++.+.+..+.+. ++ +-.
T Consensus 187 -l~d~--~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d---~~--vr~ 256 (410)
T TIGR02270 187 -LRDS--DPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA---AA--TRR 256 (410)
T ss_pred -HcCC--CHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC---hh--hHH
Confidence 1122 55666666666666666 444444433 333444433333333333322 3555555554432 11 333
Q ss_pred HHHHHhcccCChhhHHHHH
Q 006627 280 SLIIECGFVGGLQLGKWLH 298 (638)
Q Consensus 280 ~ll~~~~~~~~~~~a~~~~ 298 (638)
..+.++...|+...+..+.
T Consensus 257 ~a~~AlG~lg~p~av~~L~ 275 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCL 275 (410)
T ss_pred HHHHHHHHcCCcchHHHHH
Confidence 4444444445444443333
No 364
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.54 E-value=14 Score=29.67 Aligned_cols=38 Identities=21% Similarity=-0.018 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 546 IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
.....|.-++.+.++++.+++..+.+++.+|+|..+..
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 33444556777888888888888888888888765544
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.39 E-value=1e+02 Score=33.68 Aligned_cols=219 Identities=13% Similarity=-0.008 Sum_probs=106.4
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCccc-------HHHHHH-HHHHhcCCHHHHHHHHHcCC--------CCCchhHHHHH
Q 006627 386 CTEAGALEMGKWLHTYIEKQGLEVDVI-------LKTALV-DMYAKCGDVNGAYRLFSEAI--------YRDICMWNAMM 449 (638)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~ 449 (638)
.....++++|..+..++...--.|+.. .++.|- ......|+++.|.++-+... .+.+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345667788888777766542222211 222221 22334577888877766543 22455666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHH---HHH--HHHHhccCc--HHHHHHHHHHHhhhcCCC-C----ChhHHH
Q 006627 450 AGYGMHGCGEEALIFFVDMERSGVKPNGITF---IGL--LNACSHAGL--VTEGKSVFDKMVHGLGLV-P----KIEHYG 517 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~l--~~~~~~~~~--~~~a~~~~~~~~~~~~~~-p----~~~~~~ 517 (638)
.+..-.|++++|..+.++..+..-.-+...+ ..+ ...+...|. +.+....+......+... | -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777788888888877665543212222222 222 223555663 333333333333221111 1 123333
Q ss_pred HHHHHHHhc-CChHHHHHHHHhC-CCCCCH--hh--HHHHHHHHhhcCChHHHHHHHHHHhccCCCC-cch-H---HHHH
Q 006627 518 CMVDLLGRA-GLLDEAHEMIKSM-PLRPNM--IV--WGALLAASKLHKNPSMGEIAATQILEIEPQN-YGY-N---VLMS 586 (638)
Q Consensus 518 ~l~~~~~~~-g~~~~A~~~~~~~-~~~p~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~-~---~~l~ 586 (638)
.+..++.+. +...+|..-+.-- ...|.. .. +..++......|+.++|...+.++..+--+. +.. | ...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 344444441 1222222222211 122221 11 1245566777888888888888876632221 111 1 1222
Q ss_pred H--HHHhcCCHHHHHHHHHH
Q 006627 587 N--IYAVANRWNDVAGVRRV 604 (638)
Q Consensus 587 ~--~~~~~g~~~~A~~~~~~ 604 (638)
. .-...|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 23455777777776664
No 366
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.05 E-value=15 Score=27.76 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627 359 KAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVD 419 (638)
Q Consensus 359 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (638)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455666666667788999999999999999999999999998887653 233336666554
No 367
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.62 E-value=3.5 Score=23.19 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 559 KNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 559 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
|+.+.+..++++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999889888888777654
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.53 E-value=48 Score=29.40 Aligned_cols=60 Identities=8% Similarity=-0.062 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMV 504 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 504 (638)
+.+.-++.+.+.+...+++...++-.+.. +.|..+-..+++.++-.|+|++|..-++-..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34455666777778888888777766653 3445566777777888888888877666554
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.38 E-value=32 Score=34.09 Aligned_cols=52 Identities=10% Similarity=-0.033 Sum_probs=29.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHh--ccCcHHHHHHHHHHHhh
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNGI--TFIGLLNACS--HAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 505 (638)
...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556677777777776665 444443 3444444443 34556667777666654
No 370
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.37 E-value=46 Score=34.29 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=53.6
Q ss_pred hcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHH
Q 006627 221 KCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAY 300 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 300 (638)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|...++ |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 4455555555543332 334466666666666666666666655433 33445555555555544444444
Q ss_pred HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 006627 301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGM 336 (638)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 336 (638)
..+.|. .|....+|...|+++++.+++.+-
T Consensus 718 ~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 444442 133334556677777777776543
No 371
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.30 E-value=1e+02 Score=33.08 Aligned_cols=49 Identities=27% Similarity=0.288 Sum_probs=34.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccC
Q 006627 136 DVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVA 186 (638)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 186 (638)
+...|- +|-.|.|.|++++|.++..+.... .......|...+..+....
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 445564 677889999999999999665543 5566677888888887653
No 372
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.64 E-value=21 Score=32.01 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=48.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhc-----CCCCChhH-----------HHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGL-----GLVPKIEH-----------YGCMVDLLGRAGLLDEAHEMIKSM-PLR 542 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 542 (638)
...-..-+.+.|++.+|..-|++++... .-+|...- +-.+..++...|++-++++...+. ...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 3333445667777888877777654210 11232111 122223444445555555555444 222
Q ss_pred C-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 543 P-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 543 p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
| +..+|..-..+....=+.++|..-+.++++++|.-
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 2 34444444444444445556666666666666553
No 373
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.03 E-value=68 Score=30.41 Aligned_cols=116 Identities=7% Similarity=-0.183 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc-----C--ChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCC
Q 006627 492 LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA-----G--LLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKN 560 (638)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 560 (638)
+..+|..+++++.+. |..+.......+...|..- - +...|...+.++-..-++.....+...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666653 4444322222233333221 1 223566666665222234444444444432 336
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---------------CHHHHHHHHHHHhhcCCc
Q 006627 561 PSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN---------------RWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 611 (638)
.++|...|+++-+... ......++ ++...| +...|...+...-..+..
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 7788888888877766 45555565 566555 777777777776655543
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.94 E-value=7.7 Score=29.27 Aligned_cols=52 Identities=6% Similarity=-0.095 Sum_probs=37.8
Q ss_pred hhcCChHHHHHHHHHHhccCCCC---------cchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 556 KLHKNPSMGEIAATQILEIEPQN---------YGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+.||+..|...+.+.++..... ..+...++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46778888888777777643321 23456678889999999999999887754
No 375
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=76.94 E-value=69 Score=30.45 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc--cC----chHHHHHHHHHHHHhCC---CCcccHHHHHHHHHHhcCCH
Q 006627 357 IDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE--AG----ALEMGKWLHTYIEKQGL---EVDVILKTALVDMYAKCGDV 427 (638)
Q Consensus 357 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 427 (638)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+++.|++.-. .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777778888887777766653322222 11 34556677777776431 1223333333221 11222
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCc--HHHHHHHHHHH
Q 006627 428 NGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI--TFIGLLNACSHAGL--VTEGKSVFDKM 503 (638)
Q Consensus 428 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~ 503 (638)
+.- .+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+
T Consensus 156 e~l---------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EEL---------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HHH---------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 111 255667778888877766442 33333333322222 45778888888
Q ss_pred hhhcCCCCChhHHHHHHHHH
Q 006627 504 VHGLGLVPKIEHYGCMVDLL 523 (638)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~ 523 (638)
.+. ++++....|..++-.-
T Consensus 209 ~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHc-CCccccccccHHHHHH
Confidence 875 8888777776655433
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.78 E-value=15 Score=29.48 Aligned_cols=69 Identities=9% Similarity=-0.041 Sum_probs=51.7
Q ss_pred CCCHhhHHHHHHHHhhcC---ChHHHHHHHHHHhc-cCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 542 RPNMIVWGALLAASKLHK---NPSMGEIAATQILE-IEPQ-NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 542 ~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.++..+...+.++..+.. +..+.+.+++...+ -.|+ .......|+-.+++.|+|++++++.+.+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 455666667777777655 46778888998886 4454 345667788889999999999999998876543
No 377
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.12 E-value=33 Score=29.99 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=51.6
Q ss_pred CchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCC-CCchhHHHHHHHHHHhcCChHHHH
Q 006627 152 LPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDE-KLGVAIATALIDMYSKCGNLAYAK 229 (638)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 229 (638)
.-+.|++.|-.+...+.--++. .-..+..|....+.+++..++....+...+. .+++.++.+|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456777777777665443333 3333444445677777777777777765544 668888888888888888888764
No 378
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.97 E-value=9.9 Score=31.18 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=47.7
Q ss_pred hHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 006627 529 LDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWN 596 (638)
Q Consensus 529 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 596 (638)
.+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+....+.+|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356777777774 34455555666778999999999999999999999999999999987776443
No 379
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.83 E-value=6 Score=25.93 Aligned_cols=30 Identities=7% Similarity=-0.076 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 581 YNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
....++-.+++.|+|++|+++.+.+.+..|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 456788889999999999999999876554
No 380
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.79 E-value=1.2e+02 Score=33.51 Aligned_cols=125 Identities=8% Similarity=0.092 Sum_probs=71.7
Q ss_pred ChhHHHHhhhhhhcHHHHHHHHHhCCCchhHHHHHHHHHHCC---CCCCcccHHHHHHHHHcccCc--hHHHHHHHHHHH
Q 006627 25 FKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNG---SEVDNFTIPTILKACAQVLMT--HLGKEIHGFAIK 99 (638)
Q Consensus 25 ~~~~A~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~ 99 (638)
.+++...++.+-..|..|+..|...|..++|+++|....... ..--..-+-.++..+...+.. +...+.-.+...
T Consensus 493 ~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~ 572 (877)
T KOG2063|consen 493 DVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN 572 (877)
T ss_pred chHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc
Confidence 467777777777888888888888888888888888886532 011112233355555555544 555555555554
Q ss_pred hCCCCChhHHH------------HHHHhhhcCCChhHHHHHhccCCC----CCcchHHHHHHHHHh
Q 006627 100 NGLDGDAYVSN------------ALIQMYSECGSLVSARYLFDEMPN----RDVVSWSTMIRGYHR 149 (638)
Q Consensus 100 ~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~ 149 (638)
....-...++. ..+-.|......+-++..++.+.. ++....+.++..|++
T Consensus 573 ~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 573 KNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 43211111111 122335566677777777777653 345555666666654
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.89 E-value=72 Score=29.66 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=59.7
Q ss_pred CCCcCCHhhHHHHHHHhcccC-----chHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCc
Q 006627 166 MDIRPSEVAMISMVSLFADVA-----DVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSV 240 (638)
Q Consensus 166 ~~~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 240 (638)
.+.+++......++..+...+ ..+-......+. +.+..+..++.....+...|.+.|++.+|+..|-.-..++.
T Consensus 43 ~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 43 SEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp TT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 444455444444444333222 222334444444 44555555889999999999999999999987754433333
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhH-HHHHHHhcccCChhhHHHHHHHHHHh
Q 006627 241 VSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITI-LSLIIECGFVGGLQLGKWLHAYILRN 304 (638)
Q Consensus 241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 304 (638)
..+..++..+...|. ..+...| ...+-.|...++...|...++...+.
T Consensus 122 ~~~~~ll~~~~~~~~----------------~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 122 FAYVMLLEEWSTKGY----------------PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHTS----------------S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC----------------CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333223322222222 2222222 22333455667777777777666554
No 382
>PRK10941 hypothetical protein; Provisional
Probab=73.59 E-value=21 Score=33.28 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=50.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHH
Q 006627 518 CMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVL 584 (638)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 584 (638)
.+-.+|.+.++++.|+...+.+ .+.|+ +.-+..-.-.|.+.|....|..-++..++..|+++.+-..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3455677888888888888877 44553 5556667777888888888998899888888887765443
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.48 E-value=15 Score=34.53 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=62.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--C--CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 518 CMVDLLGRAGLLDEAHEMIKSM--P--LRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~--~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
.=++-|.+.+++..|...+.+- . -.|+ ...|..-..+....||+..|+.-..+++.++|.+..+|..=+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3344555666666676666554 1 1232 33444445555678999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHH
Q 006627 592 ANRWNDVAGVRRV 604 (638)
Q Consensus 592 ~g~~~~A~~~~~~ 604 (638)
..++++|....+.
T Consensus 166 Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 166 LERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHhh
Confidence 9996666665543
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.09 E-value=35 Score=25.46 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=27.4
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
...+++.++.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44556666677777777777777777777777777766555443
No 385
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.00 E-value=4.5 Score=37.24 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 523 LGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
..+.|+.++|..+|+.+ ...|+ +..+..+......+++.-+|-+.|-+++.+.|.+..++..-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 34677788888877765 45553 45555555555666777777888888888888776665543
No 386
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.45 E-value=10 Score=22.43 Aligned_cols=18 Identities=0% Similarity=0.121 Sum_probs=7.6
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 006627 584 LMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 584 ~l~~~~~~~g~~~~A~~~ 601 (638)
.++-.+...|++++|+++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444444444444444
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.28 E-value=11 Score=26.94 Aligned_cols=45 Identities=13% Similarity=-0.036 Sum_probs=22.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCcHHHHHHH
Q 006627 455 HGCGEEALIFFVDMERSGVKPNG--ITFIGLLNACSHAGLVTEGKSV 499 (638)
Q Consensus 455 ~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 499 (638)
.++.++|+..|+...+.-..|.. .++..++.+++..|++.+++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544322222 3445555555555555555444
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.19 E-value=8.3 Score=24.08 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCC
Q 006627 143 MIRGYHRGGLPEEALEVMREMRFMD 167 (638)
Q Consensus 143 li~~~~~~~~~~~a~~~~~~m~~~~ 167 (638)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5677888888888888888877644
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.97 E-value=20 Score=36.53 Aligned_cols=133 Identities=14% Similarity=-0.016 Sum_probs=89.1
Q ss_pred CCcHHHHHHHHHHHhcc--CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH-HhcCChHHHHHHHHhC-CCCCC--Hhh
Q 006627 474 KPNGITFIGLLNACSHA--GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL-GRAGLLDEAHEMIKSM-PLRPN--MIV 547 (638)
Q Consensus 474 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~-~~~p~--~~~ 547 (638)
-|+..+..+++.-...- ...+.+-.++..|.. ...|-=.+.|. .-.| .-.|+...|...+..+ ...|. ...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35565555554333221 123444555555543 33342222222 2233 3469999999988877 44442 344
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 548 WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
...|.+...+.|-.-+|..++.+.+.++...|-.+..+|++|....+.+.|++.|+...+.-
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55677777788888899999999999998888999999999999999999999999776543
No 390
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.68 E-value=1.2e+02 Score=30.76 Aligned_cols=93 Identities=9% Similarity=0.132 Sum_probs=51.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH---HhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhh
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL---GRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKL 557 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 557 (638)
++.-+.+.|-+.+|...+..+.. --+|+...|..++..= ..+| ...+.++++.| .+..|+..|...+..-..
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 44444555556666666666553 3344555555555432 2223 55555666555 233566666666666666
Q ss_pred cCChHHHHHHHHHHhc-cCCCC
Q 006627 558 HKNPSMGEIAATQILE-IEPQN 578 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~-~~p~~ 578 (638)
.|..+.+-.++.++.+ ++|..
T Consensus 543 ~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred CCCcccccHHHHHHHHhhChhh
Confidence 7777777777777665 55543
No 391
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.43 E-value=1.9e+02 Score=32.92 Aligned_cols=255 Identities=8% Similarity=-0.062 Sum_probs=142.0
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 006627 229 KQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEF 308 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (638)
..+.+.+..++...-...+..+.+.+..+ +...+..+.+. +|...=...+.++...+........+..+.+. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 34555555677766666677777666533 44444444432 34333334444444332211112223233322 4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE 388 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (638)
+..+-...+..+...+..+ ...+...+.++|...-...+.++...+..+.. .... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHH
Confidence 5566666666665543221 23455566677776666677777766554322 2222 13455444455556655
Q ss_pred cCchHH-HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH-HHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 006627 389 AGALEM-GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAY-RLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFV 466 (638)
Q Consensus 389 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 466 (638)
.+..+. +...+..+.+ .++..+-...+.++...|..+.+. .+...+..++...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 554332 2333444433 566777888888888888766553 34444556666666667777777765 45666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 467 DMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 467 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
.+.+ .|+...-...+.++.+......+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6663 67777777777788775445567777777665
No 392
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.19 E-value=98 Score=31.18 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627 548 WGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPG 615 (638)
Q Consensus 548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 615 (638)
...-+.++.+..+...+..-.+.+.-..-+.+....+-...++..|++.+|.+.+.. .++..+||
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 333455566666777777766666666667777778889999999999999987664 44545444
No 393
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.13 E-value=85 Score=28.81 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=64.7
Q ss_pred ChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChH-HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 006627 528 LLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPS-MGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRV 604 (638)
Q Consensus 528 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (638)
+..+-++++++. . .+-+-..|..--......|++. .-+.+.+.++..+..|-.+|.+--|++...+.|++-+.+-..
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 355556666665 2 2235555554444455566776 778888999999999999999999999999999999999888
Q ss_pred HhhcCCcCCCC
Q 006627 605 MKEIRVKKEPG 615 (638)
Q Consensus 605 ~~~~~~~~~~~ 615 (638)
|.+..+.....
T Consensus 173 Lle~Di~NNSA 183 (318)
T KOG0530|consen 173 LLEEDIRNNSA 183 (318)
T ss_pred HHHHhhhccch
Confidence 88776666553
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.56 E-value=29 Score=34.35 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhc--------cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 549 GALLAASKLHKNPSMGEIAATQILE--------IEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 549 ~~l~~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
..|++.+.-.||+..|+++++.+-- ..+-+...+..+|.+|...+||.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666554311 122356678888999999999999999888764
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.47 E-value=1.6e+02 Score=31.68 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=26.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCc-CCC-----hhhHHHHHH--HHhccCchHHHHHHHH
Q 006627 352 AQAHCIDKAFELFIHMKVSKV-RPN-----EVTMVGLLS--LCTEAGALEMGKWLHT 400 (638)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~g~-~p~-----~~~~~~ll~--~~~~~~~~~~a~~~~~ 400 (638)
+-.+++..|...++.|....- .|+ ...+...+. .+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 446677778777777764321 111 112222222 2334678888888886
No 396
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.46 E-value=38 Score=27.25 Aligned_cols=42 Identities=2% Similarity=-0.048 Sum_probs=33.2
Q ss_pred HHHHHHHHHhc--cCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 006627 563 MGEIAATQILE--IEPQNYGYNVLMSNIYAVANRWNDVAGVRRV 604 (638)
Q Consensus 563 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (638)
.+..+|+.+.. +.-..+..|...+..+...|++++|.+++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888776 4455677888999999999999999998874
No 397
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.92 E-value=48 Score=25.48 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627 391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMER 470 (638)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 470 (638)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+|. -.+.|-.+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 44566666666555442 22222222233455666666664443444455555554443 2345555555555555555
Q ss_pred cC
Q 006627 471 SG 472 (638)
Q Consensus 471 ~~ 472 (638)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 398
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=69.76 E-value=8.1 Score=34.16 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 523 LGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
....|+.+.|.+++.++ ...| ....|..+.....+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566777777777666 4444 36677777777777888888888888888887765
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.34 E-value=97 Score=28.75 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=36.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-------HHHHHHHHHhccCcHHHHHHHH
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGI-------TFIGLLNACSHAGLVTEGKSVF 500 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~ 500 (638)
+.+...+.+++++|+..+.+....|+..+.. +...+...|...|++..-.++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3445567788888999888888888766543 3555667777777765544443
No 400
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.10 E-value=7.6 Score=38.44 Aligned_cols=102 Identities=13% Similarity=-0.039 Sum_probs=62.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhc
Q 006627 449 MAGYGMHGCGEEALIFFVDMERSGVKPNGIT-FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRA 526 (638)
Q Consensus 449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 526 (638)
+..+...+.++.|+.++.+.++. .||... |..-..++.+.+++..|..=+.++.+. .|+. ..|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 34455667888888888888875 676644 444447788888888888777777652 3431 2222222334444
Q ss_pred CChHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 006627 527 GLLDEAHEMIKSM-PLRPNMIVWGALLAAS 555 (638)
Q Consensus 527 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 555 (638)
+++.+|...|+.. ...|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 5666666666665 4667655554444443
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=73 Score=28.78 Aligned_cols=81 Identities=12% Similarity=-0.066 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHcCC--CCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHH
Q 006627 421 YAKCGDVNGAYRLFSEAI--YRDI-CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGI-TFIGLLNACSHAGLVTEG 496 (638)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a 496 (638)
|....+++.|..-|.+.+ .|.+ .-|..-+.++.+.++++.+..--.+.++ +.||.. ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 344456666666665544 4444 3345556666667777777666666554 356553 334444455566667777
Q ss_pred HHHHHHH
Q 006627 497 KSVFDKM 503 (638)
Q Consensus 497 ~~~~~~~ 503 (638)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7776665
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.29 E-value=1.4e+02 Score=30.13 Aligned_cols=198 Identities=11% Similarity=-0.012 Sum_probs=88.4
Q ss_pred HHHHHHCCCCCCccc--HHHHHHHHHcccCchHHHHHHHHHHHhCCCCChh--HHHHHHHhhhcCCChhHHHHHhccCCC
Q 006627 59 YAFMRKNGSEVDNFT--IPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAY--VSNALIQMYSECGSLVSARYLFDEMPN 134 (638)
Q Consensus 59 ~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~ 134 (638)
++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. ....-+...+..|+.+.+..+++.-..
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~ 93 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCc
Confidence 444445666655432 333445555566654 444555566544422 112334455677888887777765432
Q ss_pred C----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhH--HHHHHHhcccCchHHHHHHHHHHHHhccCCCC-
Q 006627 135 R----DVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAM--ISMVSLFADVADVDLGKAIHACVVRNCKDEKL- 207 (638)
Q Consensus 135 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 207 (638)
. +....+. +...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.++.++ +.|.....
T Consensus 94 ~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~ 164 (413)
T PHA02875 94 ADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIE 164 (413)
T ss_pred ccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCC
Confidence 1 1112222 2333445554 455555566666553221 12333334455554444333 33322200
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCccCC
Q 006627 208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVS---WTVMISGYIRCNEINEGVRLFAEMIEENVFPS 274 (638)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 274 (638)
+..-. .-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.+.+.+.|..++
T Consensus 165 d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 165 DCCGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 11111 22233345566665555555444333211 123333333445443 3334444555554
No 403
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.02 E-value=10 Score=33.53 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=50.6
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
....+|.+.+.+++.+++++-|+....|..++..--+.|+.+.|.+.|++-.+-.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999998876544
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.37 E-value=2.1e+02 Score=31.86 Aligned_cols=111 Identities=9% Similarity=0.029 Sum_probs=67.8
Q ss_pred cHHHHHHHHHcccCchHHHHHHHHHHHhC---CCCChhHHHHHHHhhhcCCCh--hHHHHHhccCCCCCc----chH---
Q 006627 73 TIPTILKACAQVLMTHLGKEIHGFAIKNG---LDGDAYVSNALIQMYSECGSL--VSARYLFDEMPNRDV----VSW--- 140 (638)
Q Consensus 73 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~----~~~--- 140 (638)
-|..|+..|...|+.++|.++|....+.. -..-...+..++..+.+.+.. +-+++.-+...+.+. ..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999998733 111223344466666666654 444444333332110 011
Q ss_pred ---------HHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhc
Q 006627 141 ---------STMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFA 183 (638)
Q Consensus 141 ---------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 183 (638)
...+-.|+.....+-+...++.+....-.++....+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 1123345566677778888888876655566666666666654
No 405
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.15 E-value=8.2 Score=35.67 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=33.4
Q ss_pred hccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 006627 488 SHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP 543 (638)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 543 (638)
.+.|+.++|..+|+.+.. +.| ++.....+.......++.-+|-+++-++ .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 467888888888888764 344 3445555555555556666776666555 4445
No 406
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=65.47 E-value=21 Score=32.83 Aligned_cols=60 Identities=17% Similarity=-0.001 Sum_probs=45.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+-.++.+.++.+.|....++.+.++|+++.-..--|-+|.+.|.+.-|+.-++...++.+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 335566777888888888888888888887777788888888888888887777555443
No 407
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.72 E-value=79 Score=29.30 Aligned_cols=87 Identities=9% Similarity=0.007 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK---- 423 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 423 (638)
|++++..+++.+++...-+--+.--+.-......-|-.|++.+.+..+.++-..-.+..-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6777777888777765544332211112223333344567777777777776666554323334446666666543
Q ss_pred -cCCHHHHHHHH
Q 006627 424 -CGDVNGAYRLF 434 (638)
Q Consensus 424 -~~~~~~A~~~~ 434 (638)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 47777777765
No 408
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.30 E-value=15 Score=26.28 Aligned_cols=45 Identities=4% Similarity=-0.051 Sum_probs=34.7
Q ss_pred hcCChHHHHHHHHHHhccCCCCcchHHH---HHHHHHhcCCHHHHHHH
Q 006627 557 LHKNPSMGEIAATQILEIEPQNYGYNVL---MSNIYAVANRWNDVAGV 601 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~ 601 (638)
...+.++|+..++++++..++.+.-+.. |..+|..-|+|.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999988876665554 45567888888888775
No 409
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.90 E-value=40 Score=27.80 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=79.4
Q ss_pred chHhhhhHHHhh---hh-cCChhHHHHhhhhhhcHHHHHHHHHhCCCchhHHHHHHHHHHCCC-----CCCcccHHHHHH
Q 006627 9 NLEQTRQCHAHI---IK-THFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGS-----EVDNFTIPTILK 79 (638)
Q Consensus 9 ~~~~~~~l~~~~---~~-~g~~~~A~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~ 79 (638)
|.+++...+... .+ .+-.++.+.+ -.|.++.-....+++...+.+++.+..-.. ..+...|..+++
T Consensus 13 nL~~w~~fi~~~~~y~~~~~~~~~~k~~-----fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~ 87 (145)
T PF13762_consen 13 NLEVWKTFINSHLPYMQEENASQSTKTI-----FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFK 87 (145)
T ss_pred hHHHHHHHHHHHHHHhhhcccChhHHHH-----HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHH
Confidence 777777777655 22 2334444444 467888888888888888888887743211 356678999999
Q ss_pred HHHcccC-chHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCCh
Q 006627 80 ACAQVLM-THLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSL 122 (638)
Q Consensus 80 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 122 (638)
+..+... .-.+..+|..+.+.+.++++.-|..+|.++.+....
T Consensus 88 SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 88 SLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 9977766 556788899999988899999999999998875433
No 410
>PRK13342 recombination factor protein RarA; Reviewed
Probab=63.60 E-value=1.7e+02 Score=29.54 Aligned_cols=113 Identities=13% Similarity=0.012 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHc---Cc-cCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 006627 257 NEGVRLFAEMIEE---NV-FPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTL 332 (638)
Q Consensus 257 ~~a~~~~~~m~~~---~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (638)
++...++...... |+ ..+......++..+ .|+...+..+++.....+...+.. ....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHH
Confidence 4444444443321 33 44555555554443 677777777776654432111211 12222
Q ss_pred HhcC---CCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHh
Q 006627 333 FDGM---KSKDVMIWNAVISAYAQ---AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCT 387 (638)
Q Consensus 333 ~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 387 (638)
+... .+++...+..++.++.+ ..+++.|+.++..|.+.|..|....-..++.++.
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2211 11122233444555544 5789999999999998887776554444444433
No 411
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.98 E-value=1.2e+02 Score=27.51 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=10.0
Q ss_pred HHHHHhccCcHHHHHHHHHHH
Q 006627 483 LLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~ 503 (638)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444445555555555443
No 412
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=62.97 E-value=52 Score=32.81 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=31.2
Q ss_pred HHHhCCCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 535 MIKSMPLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 535 ~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
+|...+++|. ..++...+..+.+.+|+..|-.+.++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3444466665 4566777888899999999999999999999864
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.89 E-value=1.7e+02 Score=28.87 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=26.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-ccCcHHHHHHHHHHH
Q 006627 450 AGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS-HAGLVTEGKSVFDKM 503 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 503 (638)
..+.+.|-+..|+++.+-+......-|+.....+|..|+ ++++++--+++++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 344555555555555555555432224444444444443 445555555555443
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.73 E-value=57 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 006627 423 KCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEA 461 (638)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 461 (638)
..|+.+.|.+++..+. ..+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666666666666666654444
No 415
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.50 E-value=28 Score=32.40 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred cCCcchHhhhhHHH-hhhhcC-ChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHH
Q 006627 5 NGFLNLEQTRQCHA-HIIKTH-FKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILK 79 (638)
Q Consensus 5 ~~~~~~~~~~~l~~-~~~~~g-~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 79 (638)
+|..+..+.+.|.+ .+.+.| -..-|.++|.+. ...|.++..+.+.+.-+.-+++| ||+..+-..+..
T Consensus 160 nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak 231 (412)
T KOG2297|consen 160 NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAK 231 (412)
T ss_pred CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHH
Q ss_pred HHHcccCchHHH---------------------------------HHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHH
Q 006627 80 ACAQVLMTHLGK---------------------------------EIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSAR 126 (638)
Q Consensus 80 ~~~~~~~~~~a~---------------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 126 (638)
.+...|-.+... .+=++|.+.+ -|++.+...+-+.......|..-.
T Consensus 232 ~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKke 310 (412)
T KOG2297|consen 232 YFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKE 310 (412)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHH
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHH
Q 006627 127 YLFDEMPNRDVVSWSTMIRGYHRGGLPEEAL 157 (638)
Q Consensus 127 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 157 (638)
++..+-.-+...+|..|+.+++.+|+.+-.+
T Consensus 311 elva~qalrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 311 ELVAEQALRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCChHHHHH
No 416
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.43 E-value=64 Score=29.17 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCcHH-----------HHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERS------GVKPNGI-----------TFIGLLNACSHAGLVTEGKSVFDKMVHGL 507 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 507 (638)
...-.+-+.+.|++.+|..-|++.... .-+|... .+....+++...|++-++++...++.+
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~-- 258 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR-- 258 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh--
Confidence 333445677889999999988875421 1133222 234445666788999999999999886
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 006627 508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN 544 (638)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 544 (638)
..+-++..|-.-..+....=+.++|..-|... ...|.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 44556666666666666666888888888776 55564
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.07 E-value=32 Score=30.27 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=16.5
Q ss_pred CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 542 RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 542 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
.|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 418
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.02 E-value=53 Score=25.53 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=26.5
Q ss_pred hhHHHHhhhhhhcHHHHHHHHHhCCCchhHHHHHHHHHH
Q 006627 26 KFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRK 64 (638)
Q Consensus 26 ~~~A~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 64 (638)
+++..+.+.+-..|..|+.-|...|..++|++++.++..
T Consensus 29 ~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 29 LEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344444444447777777777777777777777777765
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.25 E-value=37 Score=25.55 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=15.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHhcc
Q 006627 551 LLAASKLHKNPSMGEIAATQILEI 574 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~ 574 (638)
+.......|++++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455667777777777777664
No 420
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.09 E-value=1e+02 Score=28.55 Aligned_cols=83 Identities=6% Similarity=-0.086 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHH----cCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-----
Q 006627 418 VDMYAKCGDVNGAYRLFS----EAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS----- 488 (638)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----- 488 (638)
|.+++..+++.++....- .-.+--+.....=|-.|.+.+.+..+.++-..-...--.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566666666666654332 11121223333334445555665555555544443211112233544444432
Q ss_pred ccCcHHHHHHHH
Q 006627 489 HAGLVTEGKSVF 500 (638)
Q Consensus 489 ~~~~~~~a~~~~ 500 (638)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 345566665554
No 421
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.94 E-value=1.5e+02 Score=27.75 Aligned_cols=113 Identities=8% Similarity=-0.005 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCC-----CCCchhHHHHHHHHHhc-C-ChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 006627 427 VNGAYRLFSEAI-----YRDICMWNAMMAGYGMH-G-CGEEALIFFVDMER-SGVKPNGITFIGLLNACSHAGLVTEGKS 498 (638)
Q Consensus 427 ~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 498 (638)
+.+|+.+|+... -.|......+++..... + ....-.++.+-+.. .+-.++..+...++..++..++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 445566665222 22444445555554441 1 22222333333333 2347788888889999999999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
+|+......+...|...|..+++.....|+..-...++++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 99988763345557788999999999999988888888764
No 422
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.74 E-value=49 Score=30.76 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMV 504 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 504 (638)
+++.....|...|.+.+|.++.++....+ +.+...+..++..+...|+--.+.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445566777777777777777777654 4456667777777777777666665555554
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.62 E-value=31 Score=30.31 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=38.8
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP 543 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 543 (638)
.....+.+......+.+.+.....|++..|..++..+...|+.++|.++.+++ ..-|
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33555555555555554444456788888888888888888888888888877 3344
No 424
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.53 E-value=1.7e+02 Score=28.07 Aligned_cols=120 Identities=11% Similarity=0.057 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh------ccCcHHHHHHHHHHHhhhcCCCCChh-HHHHHHHHHHhcCChH
Q 006627 458 GEEALIFFVDMERSGVKPNGITFIGLLNACS------HAGLVTEGKSVFDKMVHGLGLVPKIE-HYGCMVDLLGRAGLLD 530 (638)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 530 (638)
.+++..++++...++ .|.+......|.++- ..-+|..-..+|+.+.. +.|++. +.|. ..++.+.--.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehH-HHHHHHhhhHH
Confidence 567888888888877 588888777776653 23467777778877764 445543 3332 23444555567
Q ss_pred HHHHHHHhCCCCCCH----hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchH
Q 006627 531 EAHEMIKSMPLRPNM----IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYN 582 (638)
Q Consensus 531 ~A~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 582 (638)
.++..++-+...|.. ..+..-...+.+.|..++|...|++++.+.++..+.-
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 777777776434322 2223334567789999999999999999988755443
No 425
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.28 E-value=66 Score=25.61 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627 462 LIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV 520 (638)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 520 (638)
.+-+.....-.+.|++.....-+++|.+.+|+..|.++|+-++. ...+....|..++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34445555566788888888888888888888888888887765 3333333454444
No 426
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.00 E-value=58 Score=24.00 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHH
Q 006627 90 GKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEA 156 (638)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 156 (638)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..++ +....|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4455666666662 233333333333335577777777777777 6777777777777777665444
No 427
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.25 E-value=88 Score=24.15 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=56.6
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627 85 LMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMR 164 (638)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (638)
...++|..|.+.+...+ .....+--..+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 46788999999988876 2344444455666788899999966656666688888866544 57888888888888777
Q ss_pred HCCCcCCHhhH
Q 006627 165 FMDIRPSEVAM 175 (638)
Q Consensus 165 ~~~~~p~~~t~ 175 (638)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 4444333
No 428
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.12 E-value=1.3e+02 Score=31.08 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCC
Q 006627 415 TALVDMYAKCGDVNGAYRLFSEAI 438 (638)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~~ 438 (638)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 456678888899999998888776
No 429
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.98 E-value=2.1e+02 Score=28.88 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=37.8
Q ss_pred HcccCchHHHHHHHHHHHhCCCCChhH--HHHHHHhhhcCCChhHHHHHhccCCCCCcc--hHHHHHHHHHhCCCchHHH
Q 006627 82 AQVLMTHLGKEIHGFAIKNGLDGDAYV--SNALIQMYSECGSLVSARYLFDEMPNRDVV--SWSTMIRGYHRGGLPEEAL 157 (638)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~ 157 (638)
+..|+.+. ++.+.+.|..|+... ..+.+...+..|+.+-+..+++.-..++.. .....+...+..|+.+.+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 34455544 444445666655432 234445556677777666666543333221 1122344455667766555
Q ss_pred HHHH
Q 006627 158 EVMR 161 (638)
Q Consensus 158 ~~~~ 161 (638)
.+++
T Consensus 86 ~Ll~ 89 (413)
T PHA02875 86 ELLD 89 (413)
T ss_pred HHHH
Confidence 4443
No 430
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=56.05 E-value=29 Score=32.42 Aligned_cols=79 Identities=8% Similarity=0.010 Sum_probs=50.7
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHH-HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 509 LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGAL-LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
+..|+..|...+.-..+.|.+.+...++.+. ...| |+..|..- ..-+..+++++.++..+.+.+.++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445555555554445555666666666555 3334 45555331 2234568899999999999999999999888755
Q ss_pred HH
Q 006627 586 SN 587 (638)
Q Consensus 586 ~~ 587 (638)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.03 E-value=47 Score=26.37 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC
Q 006627 92 EIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP 133 (638)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 133 (638)
+.++.+...++-|++.+...-++++-+.+|+..|.++|+-++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444444455545555555555544443
No 432
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.61 E-value=13 Score=35.07 Aligned_cols=86 Identities=10% Similarity=-0.000 Sum_probs=39.7
Q ss_pred ccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-hhHHHHHHHHhhcCChHHHHH
Q 006627 489 HAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM-IVWGALLAASKLHKNPSMGEI 566 (638)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~ 566 (638)
..|.++.|++.|...++ .-+|....|..-...+.+.+++..|++-+... .+.||. ..|..-..+....|+.++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34445555555555543 22233333333444455555555555554444 334432 222222333444555555555
Q ss_pred HHHHHhccCC
Q 006627 567 AATQILEIEP 576 (638)
Q Consensus 567 ~~~~~~~~~p 576 (638)
.+..+.+++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555555443
No 433
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=55.37 E-value=32 Score=20.69 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 580 GYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+|..||.+-...++|++|.+-|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999888877643
No 434
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.19 E-value=1.9e+02 Score=26.98 Aligned_cols=104 Identities=19% Similarity=0.042 Sum_probs=48.4
Q ss_pred hcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCcCCChhhHHHHHHHHhccCchH-HHH
Q 006627 322 KCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFEL----FIHMKVSKVRPNEVTMVGLLSLCTEAGALE-MGK 396 (638)
Q Consensus 322 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 396 (638)
+.+++++|.+++-. -...+.+.|+...|-++ ++-..+.+.+++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665532 12334555555444333 333344455666655555554444332111 122
Q ss_pred HHHHHHH---HhCCC--CcccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627 397 WLHTYIE---KQGLE--VDVILKTALVDMYAKCGDVNGAYRLFSE 436 (638)
Q Consensus 397 ~~~~~~~---~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (638)
.+.+.+. +.+-. -++.....+...|.+.|++.+|+..|-.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 2222222 22212 3567778888888899999888887743
No 435
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=54.07 E-value=2.2e+02 Score=28.15 Aligned_cols=25 Identities=8% Similarity=-0.408 Sum_probs=14.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC
Q 006627 451 GYGMHGCGEEALIFFVDMERSGVKP 475 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~~~~p 475 (638)
.+.+.+++..|.++|+++.+...+|
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~ 163 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSA 163 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccCh
Confidence 3445556666666666666554333
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.31 E-value=3.5e+02 Score=29.88 Aligned_cols=57 Identities=16% Similarity=-0.028 Sum_probs=34.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh----hHHHHHHH--HHHhcCChHHHHHHHHhC
Q 006627 482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI----EHYGCMVD--LLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~--~~~~~g~~~~A~~~~~~~ 539 (638)
.++......|++++|...+.++..- ...+.. ..-...+. .....|+.++|.....+-
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 5667777888888888888877653 222211 11112222 224668888888877664
No 437
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.17 E-value=99 Score=24.84 Aligned_cols=40 Identities=8% Similarity=0.001 Sum_probs=31.4
Q ss_pred HHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627 564 GEIAATQILEI--EPQNYGYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 564 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
...+|+.+... .-..+..|...+..+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777653 34567788889999999999999999887
No 438
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.49 E-value=1e+02 Score=33.54 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP 540 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (638)
..+|..|......+|+.+-|+..|+.... |+.|-..|.-.|+.++-.++.+.+.
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHH
Confidence 34555555555566666666555555432 2233334445555555555554443
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.42 E-value=22 Score=28.60 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=23.1
Q ss_pred HhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 006627 47 IKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKAC 81 (638)
Q Consensus 47 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 81 (638)
...|.-.+|-.+|.+|+..|.+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344666778888888888887776 466666544
No 440
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.39 E-value=41 Score=28.81 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=19.6
Q ss_pred HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627 553 AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW 595 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 595 (638)
..|.+.|.+++|.+++++..+ +|++......|..+-...+.+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 344555555555555555555 444444444444443333333
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.71 E-value=59 Score=20.73 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=27.9
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHH
Q 006627 144 IRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVS 180 (638)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 180 (638)
+....+.|-.+++..+++.|.+.|+..+...+..+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3344567888888888999988888888777766654
No 442
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.56 E-value=2.3e+02 Score=27.35 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh---cCChHHHHHH
Q 006627 459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR---AGLLDEAHEM 535 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~ 535 (638)
+.-+.++++.++.+ +-+......++..+.+..+.+...+-|+++... .+-+...|...++.... .-.+++....
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 45566777766663 334456666677777777777777777777763 33345566655554433 1234444444
Q ss_pred HHhC-------CCC--------CC-----HhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 536 IKSM-------PLR--------PN-----MIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 536 ~~~~-------~~~--------p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
|.+. ... |+ ...+..+.....+.|-.+.|...++.+++++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 4332 100 11 1122333344567899999999999999865
No 443
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.84 E-value=92 Score=24.22 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006627 240 VVSWTVMISGYIRCNEINEGVRLFAEMIE 268 (638)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (638)
..-|..++..|...|..++|++++.++..
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34688899999999999999999998877
No 444
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=49.86 E-value=1.3e+02 Score=24.03 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhH-HHHHHHHhhcCChHHHHHHHHHHh
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVW-GALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
..+..++..++.-.|..++|.+++...+..+..... ..++..|....+.++..++-++.+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 345666777777888888888888888666654444 467778888777777766666554
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.64 E-value=2.8e+02 Score=27.44 Aligned_cols=164 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred hhhHHHhhhhcCChhHHHHhhhhh-----------hcHHHHHHHHHhCCCchhHHHHHHHHHHC---------CCCCCcc
Q 006627 13 TRQCHAHIIKTHFKFSYTNIINPL-----------TRYNSLVTSYIKNNKPSSALNIYAFMRKN---------GSEVDNF 72 (638)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~ 72 (638)
+..+-+.|..+|++..|.+.+.++ ..|-.+|..-.-.|+|.....+..+..+. .+++...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Q ss_pred cHHHHHHHHHcccCchHHHHHHHHHHHhCCC------CChhHHHHHHHhhhcCCChhHHHHH-----hccCCCCCcchHH
Q 006627 73 TIPTILKACAQVLMTHLGKEIHGFAIKNGLD------GDAYVSNALIQMYSECGSLVSARYL-----FDEMPNRDVVSWS 141 (638)
Q Consensus 73 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ 141 (638)
.+..+...+.+ .++.|.+.|-........ |+..+....+.+++-.++-+--+.+ |+.+.+-.+..+.
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCC-----CcCCHhhHHHHHH
Q 006627 142 TMIRGYHRGGLPEEALEVMREMRFMD-----IRPSEVAMISMVS 180 (638)
Q Consensus 142 ~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~t~~~ll~ 180 (638)
.+...| .+++...++++++++..= +.|...+.-.+|+
T Consensus 311 il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 311 ILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.59 E-value=31 Score=32.30 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCcc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHH
Q 006627 135 RDVV-SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISM 178 (638)
Q Consensus 135 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 178 (638)
++.. -|+.-|....+.||+++|+.++++.++.|+.--..+|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3444 4689999999999999999999999999987666666443
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.79 E-value=72 Score=20.34 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=21.0
Q ss_pred HhCCChHHHHHHHHHHHHcCccCChHhHHHHHH
Q 006627 251 IRCNEINEGVRLFAEMIEENVFPSEITILSLII 283 (638)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 283 (638)
.+.|-..++..+++.|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666677777777776666666655554
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.70 E-value=52 Score=22.42 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 476 NGITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
|..-...++.++...|++++|.++++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666666554
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.82 E-value=2.6e+02 Score=26.50 Aligned_cols=73 Identities=10% Similarity=0.153 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH----------hcCChHH
Q 006627 462 LIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG----------RAGLLDE 531 (638)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~g~~~~ 531 (638)
.++|+.|.+.++.|.-..+..+.-.+.+.=...+.+.+|+.+..+ ... |..|+..++ -.|++.-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467888888999999998888888888888899999999999864 222 333433332 3488888
Q ss_pred HHHHHHhCC
Q 006627 532 AHEMIKSMP 540 (638)
Q Consensus 532 A~~~~~~~~ 540 (638)
.+++++..+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 888888753
No 450
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=46.55 E-value=1.4e+02 Score=23.31 Aligned_cols=41 Identities=5% Similarity=0.049 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627 563 MGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
.+.+.+.++..+.|..+..+..++.-+...--|+++.+--+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35667777777777776666666665555555555555433
No 451
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.29 E-value=29 Score=37.33 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHH
Q 006627 484 LNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 563 (638)
|..+.+.|-.+-|+.+.+.-..++ .....+|+.+.|++.-++.. +...|..|+.....+|+.+-
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHH
Confidence 333445565665655544333222 12335667777766666553 55667777766667777776
Q ss_pred HHHHHHHHhc
Q 006627 564 GEIAATQILE 573 (638)
Q Consensus 564 A~~~~~~~~~ 573 (638)
|+..|++...
T Consensus 691 aEm~yQ~~kn 700 (1202)
T KOG0292|consen 691 AEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHhhh
Confidence 6666665543
No 452
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.53 E-value=3.1e+02 Score=27.05 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=38.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCC-CcchHHHHHHHHH-hcCCHHHHHHHHHHHhh
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQ-NYGYNVLMSNIYA-VANRWNDVAGVRRVMKE 607 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 607 (638)
.+....+.|-+..|.+..+-++.++|. ||-.-...++.|+ +.++|+--++..+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345566778888888888888888887 6666666665544 44667666666665543
No 453
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.47 E-value=1.6e+02 Score=23.68 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 006627 460 EALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDK 502 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 502 (638)
.+.++|..|..+|+--.. ..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777776655433 4566666667777777777777664
No 454
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.10 E-value=3.2e+02 Score=27.06 Aligned_cols=25 Identities=4% Similarity=-0.053 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 581 YNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
.|..|..+ .+.|+.++..+.+++..
T Consensus 320 ~Yf~Lt~A-Vr~gdlkkF~~~leq~k 344 (493)
T KOG2581|consen 320 PYFKLTQA-VRLGDLKKFNETLEQFK 344 (493)
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 34444433 45666666666665544
No 455
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.51 E-value=2.1e+02 Score=25.73 Aligned_cols=20 Identities=20% Similarity=-0.019 Sum_probs=9.4
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 006627 450 AGYGMHGCGEEALIFFVDME 469 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~ 469 (638)
......|+.+.|++....+.
T Consensus 72 r~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 33444455555555444433
No 456
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.49 E-value=1.8e+02 Score=29.28 Aligned_cols=49 Identities=14% Similarity=0.039 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhc
Q 006627 254 NEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNG 305 (638)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 305 (638)
+.+++-.++++.+.+.| .+| ....-+.+|.+.++++.|...++.-.+.|
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAG 116 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcC
Confidence 45677777777777764 122 33345677788888888888887766543
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.23 E-value=3.5e+02 Score=27.30 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=56.0
Q ss_pred CCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCchhHHHHH
Q 006627 373 RPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA---IYRDICMWNAMM 449 (638)
Q Consensus 373 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~ 449 (638)
..+......++..+ .|+...+..+++.+...+...+... ..+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~----------------v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL----------------LEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH----------------HHHHHhhhhhccCCCccHHHHHH
Confidence 44444454554433 6788888887777654321122111 11111111 111222333444
Q ss_pred HHHHh---cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 006627 450 AGYGM---HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG 491 (638)
Q Consensus 450 ~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 491 (638)
.++.+ .++.+.|+..+.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 44443 5789999999999999998887766666666655444
No 458
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.11 E-value=2.4e+02 Score=27.89 Aligned_cols=137 Identities=15% Similarity=0.003 Sum_probs=81.1
Q ss_pred chhHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCcHHHHH--------HHHHHHhccCcHHHHHHHHHHHhhhcCCCC
Q 006627 442 ICMWNAMMAGY--GMHGCGEEALIFFVDMERSGVKPNGITFI--------GLLNACSHAGLVTEGKSVFDKMVHGLGLVP 511 (638)
Q Consensus 442 ~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 511 (638)
+..|..++..+ ...+++.+|..+-+.....-..-|..|+. .+..++...|+...-..++....+.-.+..
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34454444333 34578888888887766543333444433 333445566776666666665554323333
Q ss_pred C----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHhhH----HHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 512 K----IEHYGCMVDLLGRAGLLDEAHEMIKSMPLRP--NMIVW----GALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 512 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
| ....|.|++.|...+.++.|-.+..+...+. +..-| ..+......++++..|.+.+-+++...|++
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3 3456677777778888888888888874221 11111 122233445778888888888888888873
No 459
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.95 E-value=3.7e+02 Score=27.43 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=26.3
Q ss_pred hCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCc
Q 006627 149 RGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVAD 187 (638)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 187 (638)
.++.++..+++++.+...|.....+.++.....+.+.|.
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~ 67 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGC 67 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhccc
Confidence 356778888888888877766666666666665555553
No 460
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.80 E-value=1.9e+02 Score=23.99 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCC---------CCcccHHHHHHHHHhCCC-hHHHHHHHHHHHHcCccCChHhHHHHH
Q 006627 213 TALIDMYSKCGNLAYAKQLFNRLNQ---------NSVVSWTVMISGYIRCNE-INEGVRLFAEMIEENVFPSEITILSLI 282 (638)
Q Consensus 213 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 282 (638)
+.++......+++.....+++.+.. .+-..|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444455555555555554431 233456666666655544 334455666666666666666666666
Q ss_pred HHhccc
Q 006627 283 IECGFV 288 (638)
Q Consensus 283 ~~~~~~ 288 (638)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666544
No 461
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.53 E-value=4.6e+02 Score=28.40 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=14.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHH
Q 006627 143 MIRGYHRGGLPEEALEVMREMRF 165 (638)
Q Consensus 143 li~~~~~~~~~~~a~~~~~~m~~ 165 (638)
+..+|.-..+.+.+.++++++.+
T Consensus 216 vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 216 VCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeEEcCCHHHHHHHHHHHHh
Confidence 45555666666666666666665
No 462
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.45 E-value=4.1e+02 Score=27.79 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCchhHHHHHHHH-------HHCCC-------------CCCcccHHHH---HHHHHcccCchHHHHHHHHH
Q 006627 41 SLVTSYIKNNKPSSALNIYAFM-------RKNGS-------------EVDNFTIPTI---LKACAQVLMTHLGKEIHGFA 97 (638)
Q Consensus 41 ~ll~~~~~~~~~~~a~~~~~~m-------~~~~~-------------~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~ 97 (638)
.+...+..+|+.+-|-++.++. ....+ +-+...|.++ ++.+.+.|.+..|.++...+
T Consensus 289 qva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKll 368 (665)
T KOG2422|consen 289 QVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLL 368 (665)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444666777766666555544 22221 2233344444 34567889999999999999
Q ss_pred HHhCCCCChhHHHHHHHhhh-cCCChhHHHHHhccCCC------CCcchHHH-HHHHHHhCCC---chHHHHHHHHhH
Q 006627 98 IKNGLDGDAYVSNALIQMYS-ECGSLVSARYLFDEMPN------RDVVSWST-MIRGYHRGGL---PEEALEVMREMR 164 (638)
Q Consensus 98 ~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~------~~~~~~~~-li~~~~~~~~---~~~a~~~~~~m~ 164 (638)
.+....-|+.....+|+.|+ +..++.-.++++++... -....|+. |...|.+... -..|+..+.+..
T Consensus 369 lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 369 LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 99986668999999999884 77788888888776532 22334544 4444554443 344555555544
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.97 E-value=1.7e+02 Score=25.27 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCCCcH--HHHH-----HHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC
Q 006627 459 EEALIFFVDMERSGVKPNG--ITFI-----GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG 527 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~--~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (638)
+.|+.+|+.+.+.--.|+. .... ..+-.|.+.|.+++|.+++++..+ .|+......-+....+.+
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHcc
Confidence 4566666665554322211 1222 223457788888888888888764 344433343343444433
No 464
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.21 E-value=21 Score=33.26 Aligned_cols=68 Identities=9% Similarity=-0.069 Sum_probs=55.6
Q ss_pred CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 542 RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVL-MSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 542 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
..|+..|...+......|.+.+...++.+++...|.|...|.. -..-|...++++.++..|.+-...+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3478888888877778889999999999999999999988876 4555888899999999988544333
No 465
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.70 E-value=2.8e+02 Score=25.16 Aligned_cols=20 Identities=0% Similarity=0.086 Sum_probs=17.5
Q ss_pred cCChHHHHHHHHHHhccCCC
Q 006627 558 HKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~~~p~ 577 (638)
.++...|...++++.+++|+
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 45678999999999999998
No 466
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.22 E-value=2.9e+02 Score=25.09 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=35.7
Q ss_pred hcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627 423 KCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK 502 (638)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 502 (638)
..+++++|.+.+-+-..+ ..--.-++.++...|+...|+.+++.+.-.. .+......++.. ...+.+.+|..+-+.
T Consensus 90 D~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred ChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 345566666665332111 1111235566666677777776666533211 111222222222 344566666665554
Q ss_pred H
Q 006627 503 M 503 (638)
Q Consensus 503 ~ 503 (638)
.
T Consensus 166 ~ 166 (226)
T PF13934_consen 166 Y 166 (226)
T ss_pred C
Confidence 4
No 467
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.13 E-value=62 Score=18.60 Aligned_cols=26 Identities=4% Similarity=0.014 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627 560 NPSMGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
.++.|..+|++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467788888888877776 45555443
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.79 E-value=1e+02 Score=28.48 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=26.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhhhcC----CCCChhHHHHHHHHHHhcCChHHHHHH
Q 006627 482 GLLNACSHAGLVTEGKSVFDKMVHGLG----LVPKIEHYGCMVDLLGRAGLLDEAHEM 535 (638)
Q Consensus 482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~ 535 (638)
.+..-|...|++++|.++|+.+...+. ..+...+...+..++.+.|+.++.+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344556666677777766666643211 111223333444444555555544443
No 469
>PRK12356 glutaminase; Reviewed
Probab=38.20 E-value=3.7e+02 Score=25.82 Aligned_cols=143 Identities=11% Similarity=0.119 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cH-HHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 428 NGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NG-ITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 428 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
+...++++++...+...-..+...-...++...|+..+ |++.|.-+ |. .+.....+.|+-....++.-.+.--+..
T Consensus 140 ~~il~~~~~~ag~~l~~de~v~~SE~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn 217 (319)
T PRK12356 140 QRILDGQQRFAGRELALSDEVYQSEQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAA 217 (319)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHc
Confidence 33344444444333222223333344445555555544 44555432 32 4555556666655555554444444444
Q ss_pred hcCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-------------CCHhhHHHHHHHHhhcCChHHHH
Q 006627 506 GLGLVP-------KIEHYGCMVDLLGRAGLLDEAHEMIKSMPLR-------------PNMIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 506 ~~~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------p~~~~~~~l~~~~~~~~~~~~A~ 565 (638)
. |+.| +...-..+......+|.+|.+-++.-+.+++ |.....-..--..-.+||--.+.
T Consensus 218 ~-G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD~~GNSv~G~ 296 (319)
T PRK12356 218 G-GVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVGLPGKSGVGGGILAVVPGKMGIAAFSPPLDSAGNSVRGQ 296 (319)
T ss_pred C-CcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHhCCccccCccceeEEEeCCceEEEEECCCcCCCCCcHHHH
Confidence 3 6666 3345556666778899999999998887422 22110000000122567777777
Q ss_pred HHHHHHhc
Q 006627 566 IAATQILE 573 (638)
Q Consensus 566 ~~~~~~~~ 573 (638)
.+++.+.+
T Consensus 297 ~~le~ls~ 304 (319)
T PRK12356 297 KAVAYVAD 304 (319)
T ss_pred HHHHHHHH
Confidence 77777654
No 470
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.91 E-value=46 Score=26.85 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHH
Q 006627 147 YHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSL 181 (638)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 181 (638)
....|.-..|..+|+.|.+.|-+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3446778899999999999998888 34555443
No 471
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.83 E-value=5e+02 Score=27.19 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=32.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-ccCcHHHHHHHHHHHh
Q 006627 449 MAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS-HAGLVTEGKSVFDKMV 504 (638)
Q Consensus 449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 504 (638)
|..+.+.|-+..|.++.+-+.+....-|+.....+|..|+ ++.+|.--+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445556666666666666665543335555666666654 5556666666655553
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=3.5e+02 Score=25.35 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCC--------CCCchhHHHH-HHHHHhcCChHHHHHHHHHHHH----cCCCCcHHHHH
Q 006627 415 TALVDMYAKCGDVNGAYRLFSEAI--------YRDICMWNAM-MAGYGMHGCGEEALIFFVDMER----SGVKPNGITFI 481 (638)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~ 481 (638)
..++..+.+.|.+.+|+.+...+. +++..+...+ -.+|-...+..++..-+...+. .-+||-...-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 456777888888888887765432 2232222111 1234444444444433333221 12344333333
Q ss_pred HHHHH--HhccCcHHHHHHHHHHHhh
Q 006627 482 GLLNA--CSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 482 ~l~~~--~~~~~~~~~a~~~~~~~~~ 505 (638)
-++.+ .+...++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 34443 3455678888888887776
No 473
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.29 E-value=1.1e+03 Score=31.20 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=10.7
Q ss_pred HhhcCChHHHHHHHHHHhcc
Q 006627 555 SKLHKNPSMGEIAATQILEI 574 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~ 574 (638)
..+.|+.++|.+.|..+.++
T Consensus 2822 ~~kL~~~eeAn~~fs~AvQi 2841 (3550)
T KOG0889|consen 2822 LEKLGKFEEANKAFSAAVQI 2841 (3550)
T ss_pred HHHhcCcchhHHHHHHHHHH
Confidence 34455555555555555543
No 474
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.69 E-value=3.6e+02 Score=25.60 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHH
Q 006627 361 FELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEK 404 (638)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 404 (638)
.++++.|...++.|.-..|.-+.-.+++.=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35677777777888877777766666676777778888887765
No 475
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.44 E-value=71 Score=30.01 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHH
Q 006627 242 SWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITIL 279 (638)
Q Consensus 242 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (638)
-|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46788888888888888888888888887765555543
No 476
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.06 E-value=1.7e+02 Score=30.89 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=57.9
Q ss_pred hHHHhhhhcCChhHHHHhhhhh-----------hcHHHHHHHHHhCCCchh------HHHHHHHHHHCCCCCCcccHHHH
Q 006627 15 QCHAHIIKTHFKFSYTNIINPL-----------TRYNSLVTSYIKNNKPSS------ALNIYAFMRKNGSEVDNFTIPTI 77 (638)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~-----------~~~~~ll~~~~~~~~~~~------a~~~~~~m~~~~~~~~~~~~~~l 77 (638)
+|..+|.-+|++..+.+++... ..||..|+.+.++|+++- |.+++++ ..+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 7999999999999999999877 789999999999998753 3333333 3356688889888
Q ss_pred HHHHHcccCchHHHHHHHHHH
Q 006627 78 LKACAQVLMTHLGKEIHGFAI 98 (638)
Q Consensus 78 l~~~~~~~~~~~a~~~~~~~~ 98 (638)
+++....-......-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 887655333333334444443
No 477
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.88 E-value=3.4e+02 Score=24.68 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCCh
Q 006627 212 ATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGL 291 (638)
Q Consensus 212 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 291 (638)
....+..|...-++.-|...++++.+| +.+-.+++ -|.+..+..--.++.+-....++.-+......++. ...|+.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif--ta~GDM 208 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEP-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF--TAQGDM 208 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhh-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh--hccchH
Confidence 344566666666666666666665554 11222222 23333333333344444444445444444433332 223443
Q ss_pred hhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006627 292 QLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSK 371 (638)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 371 (638)
.++...++.-. ..-.+-.+..+|+-..+|.+.....++..+. .+++++|.+++.++-+.|
T Consensus 209 RQalNnLQst~-------------------~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 209 RQALNNLQSTV-------------------NGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLG 268 (333)
T ss_pred HHHHHHHHHHh-------------------ccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC
Confidence 33332222111 1111112334444445555555555555443 456777777777777777
Q ss_pred cCCCh
Q 006627 372 VRPNE 376 (638)
Q Consensus 372 ~~p~~ 376 (638)
+.|..
T Consensus 269 ysp~D 273 (333)
T KOG0991|consen 269 YSPED 273 (333)
T ss_pred CCHHH
Confidence 66643
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.61 E-value=1.9e+02 Score=29.91 Aligned_cols=62 Identities=6% Similarity=0.029 Sum_probs=39.1
Q ss_pred cccCCc-chHhhh-hHHHhhhhcCChhHHHHhhhhh----------hcHHHHHHHHHhCCCchhHHHHHHHHHH
Q 006627 3 IKNGFL-NLEQTR-QCHAHIIKTHFKFSYTNIINPL----------TRYNSLVTSYIKNNKPSSALNIYAFMRK 64 (638)
Q Consensus 3 ~~~~~~-~~~~~~-~l~~~~~~~g~~~~A~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 64 (638)
++.|.- .+.+.. .|+.-|.+.+++++|..++..| ...+.+++.+.+..--.+....++.+..
T Consensus 399 ~~~G~~~~G~l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 399 FKLGVFTRGDLGLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred EeeccccCCcccHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 344444 333333 6788899999999999998888 3344555555555545555556666654
No 479
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.68 E-value=2.5e+02 Score=29.65 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=25.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
+.-+|.+..+.|.|.++++++.+ ++| ++.+--.+...+...|+.++|+..+...
T Consensus 400 l~~CYL~L~QLD~A~E~~~EAE~---~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 400 LQVCYLKLEQLDNAVEVYQEAEE---VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33344555556666666665543 222 2222223334444555555555555444
No 480
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.47 E-value=4.2e+02 Score=28.07 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=29.4
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
|....+.+.|.++++++.+.+|.++-.......+....|.-++|+.+....+
T Consensus 404 YL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 404 YLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344455556666666666666555555555555555566666655555544
No 481
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.46 E-value=1.1e+02 Score=21.14 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=25.4
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 006627 440 RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS 488 (638)
Q Consensus 440 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 488 (638)
+....++.++..++...-.++++..+.++...| ..+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555666666666666666 344444444444443
No 482
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.40 E-value=1.7e+02 Score=30.91 Aligned_cols=47 Identities=17% Similarity=0.055 Sum_probs=26.1
Q ss_pred HHHHHHHcccCchHHHHHHHHHHHhC--CCCChhHHHHHHHhhhcCCCh
Q 006627 76 TILKACAQVLMTHLGKEIHGFAIKNG--LDGDAYVSNALIQMYSECGSL 122 (638)
Q Consensus 76 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 122 (638)
+|+.+|...|++..+.++++.....+ -+.-...+|..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666666666666666665443 112234455555555555544
No 483
>PRK02287 hypothetical protein; Provisional
Probab=34.33 E-value=2.7e+02 Score=23.81 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhH-HHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVW-GALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
.+..++..++.-.|..++|.+++......++.... ..++..|....+.++..++-++.++
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 45566677777778888888888777555554333 4567777777777777666666554
No 484
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.04 E-value=1.6e+02 Score=24.44 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=36.6
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCC
Q 006627 58 IYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGS 121 (638)
Q Consensus 58 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 121 (638)
+...+.+.|++++.. -..++..+...++.-.|.++++.+.+.+.+.+..+.-.-++.+...|=
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334445555544332 334556666666666777777777776655555555555566666653
No 485
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=34.01 E-value=1.3e+02 Score=24.24 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627 554 ASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 592 (638)
.+...-+.+.|.++|+++++..|++..++..++..+-..
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 344455779999999999999999999888888776553
No 486
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.28 E-value=3.8e+02 Score=24.50 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhc-----cCCCCcchHHHH----HHHHHhcCCHHHHHHHHHHHhh
Q 006627 562 SMGEIAATQILE-----IEPQNYGYNVLM----SNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 562 ~~A~~~~~~~~~-----~~p~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+.|.+.|+++.+ +.|.+|...-+. +..|-..|+.++|.++-+..-+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 566666666654 556665433222 2234556777777776665543
No 487
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=4.9e+02 Score=25.72 Aligned_cols=220 Identities=14% Similarity=0.085 Sum_probs=123.3
Q ss_pred cCchHHHHHHHHHHHH-----hCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH
Q 006627 389 AGALEMGKWLHTYIEK-----QGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALI 463 (638)
Q Consensus 389 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 463 (638)
.++.+.|.+-+-...+ .+...+..++..+++.|...++|+.--+.+ .....+.|+...|+.
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHH
Confidence 5556665554433332 234445566667777777777776544332 122335566666654
Q ss_pred H--HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006627 464 F--FVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL--VP-KIEHYGCMVDLLGRAGLLDEAHEMIKS 538 (638)
Q Consensus 464 ~--~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (638)
. .+-|.-..-.||..|-..++..+. ...+. .+ +. ....-..|...+...|+.++|..++.+
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tLr-------------~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~e 156 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETLR-------------TVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCE 156 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHHH-------------HhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 2 122222222556565555554432 22110 00 00 112233456677889999999999988
Q ss_pred CCCC--------CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCCHHHHHHHHH
Q 006627 539 MPLR--------PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN-------YGYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 539 ~~~~--------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
.+.. ..+.....-++.|...+|+-.|.-+.+++....-+. ...|.++.....+.+.|=++-+.|+
T Consensus 157 l~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yr 236 (439)
T KOG1498|consen 157 LQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYR 236 (439)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 7422 112223344577888999999988888886533222 2467888888999999999999999
Q ss_pred HHhhcC-CcCCCCeeEEEE-CCEEEEEEeCCccCCC
Q 006627 604 VMKEIR-VKKEPGFSSVEV-NGLVHKFIRGGMVNWK 637 (638)
Q Consensus 604 ~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 637 (638)
..-+-| ++.+|.. |+.+ .+.|.-.+-+...++|
T Consensus 237 aiy~t~~vk~d~~k-w~~vL~~iv~f~~LAp~dneQ 271 (439)
T KOG1498|consen 237 AIYDTGNVKEDPEK-WIEVLRSIVSFCVLAPHDNEQ 271 (439)
T ss_pred HHhcccccccChhh-hhhhhhhheeEEeecCCCcHH
Confidence 997655 4443332 3322 2334444444444443
No 488
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.08 E-value=3.3e+02 Score=24.61 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=6.4
Q ss_pred hcCCHHHHHHHHH
Q 006627 423 KCGDVNGAYRLFS 435 (638)
Q Consensus 423 ~~~~~~~A~~~~~ 435 (638)
+.|..++|+++.+
T Consensus 115 R~~~~eeal~F~q 127 (228)
T KOG2659|consen 115 REGKTEEALEFAQ 127 (228)
T ss_pred HhhhHHHHHHHHH
Confidence 4444555555544
No 489
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.01 E-value=71 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=17.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 006627 245 VMISGYIRCNEINEGVRLFAEMIE 268 (638)
Q Consensus 245 ~li~~~~~~g~~~~a~~~~~~m~~ 268 (638)
.+|.++...|++++|.++++++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467777888888888887777654
No 490
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.99 E-value=99 Score=24.24 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc
Q 006627 41 SLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL 85 (638)
Q Consensus 41 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 85 (638)
.++..+...+..-.|.++++.+.+.+..++..|....|+.+...|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 345555555666667777777766665555555555555555444
No 491
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.78 E-value=1.9e+02 Score=27.54 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=24.0
Q ss_pred HHhhhhcCChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHH
Q 006627 17 HAHIIKTHFKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRK 64 (638)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 64 (638)
+....+.+++..-.+.+..+ ..-...+..+...|++..|++++....+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33344444444444433333 3344555555666666666666665543
No 492
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=32.77 E-value=2.3e+02 Score=29.02 Aligned_cols=24 Identities=4% Similarity=0.043 Sum_probs=11.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~ 503 (638)
|-.++.-|...++++.|.++++-.
T Consensus 576 y~~iL~e~~sssKWeqavRLCrfv 599 (737)
T KOG1524|consen 576 YPEILHEYLSSSKWEQAVRLCRFV 599 (737)
T ss_pred cHHHHHHHhccchHHHHHHHHHhc
Confidence 444444455555555555554433
No 493
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.51 E-value=2.2e+02 Score=32.44 Aligned_cols=134 Identities=13% Similarity=0.018 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC--cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 006627 456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG--LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAH 533 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 533 (638)
++.....+.+.+..+. ..-...-+..++.+|.+.+ ++++|+....++.+. ....-......|+..---..-++.|+
T Consensus 792 ~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-~~~~ae~alkyl~fLvDvn~Ly~~AL 869 (928)
T PF04762_consen 792 SKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE-DPESAEEALKYLCFLVDVNKLYDVAL 869 (928)
T ss_pred cHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-ChHHHHHHHhHheeeccHHHHHHHHh
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 534 EMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 534 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
-+++ .=..++-|...++|+.+=+-+++++.++.|. + .--.+=...|||++|++.+.++
T Consensus 870 G~YD---------l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~----~-rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 870 GTYD---------LELALMVAQQSQKDPKEYLPFLQELQKLPPL----Y-RRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred hhcC---------HHHHHHHHHHhccChHHHHHHHHHHHhCChh----h-eeeeHhhhhCCHHHHHHHHHhh
No 494
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.17 E-value=3.5e+02 Score=23.72 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=12.1
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 006627 589 YAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~ 607 (638)
..+.|+++.|.+.++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4456677777776666653
No 495
>PRK09857 putative transposase; Provisional
Probab=32.08 E-value=2.7e+02 Score=26.47 Aligned_cols=64 Identities=9% Similarity=0.002 Sum_probs=47.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCC
Q 006627 550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKE 613 (638)
Q Consensus 550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (638)
.++....+.++.++-..+.+...+..|........++.-+.+.|.-+++++..++|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444445567776677777777776676666777888888888988889998999988887543
No 496
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=32.08 E-value=1.2e+02 Score=29.99 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHH--HhhcCChHHHHHHH---HHHhccCCCCcchHHHHHHHH
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAA--SKLHKNPSMGEIAA---TQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~---~~~~~~~p~~~~~~~~l~~~~ 589 (638)
-..|+.+|.+.++.+-|+.-..+- ...|... .+.|-++ +....++.+|-+.+ .-+.-+.-.+......+++.|
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~f-rnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIkly 309 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYF-RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLY 309 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHH
Confidence 345667888889999888876554 3444321 1222222 22334455554432 222334444444455555554
No 497
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.99 E-value=2.6e+02 Score=22.24 Aligned_cols=23 Identities=9% Similarity=-0.093 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006627 583 VLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
..-+.++-..|+.++|.+.|+..
T Consensus 104 fsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 104 FSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHH
Confidence 34456678888999998888754
No 498
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.92 E-value=4.8e+02 Score=25.23 Aligned_cols=116 Identities=7% Similarity=-0.039 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhh---cCChHHHHHH
Q 006627 493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKL---HKNPSMGEIA 567 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~A~~~ 567 (638)
.+.-+.+++++.+. .+.+......++..+.+..+.++..+-++++ ...| +...|..++..... .-.++....+
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 45667788888873 3455666777888888888888888888888 3334 68888888876654 2357788888
Q ss_pred HHHHhccCC-----------CC-------cchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 568 ATQILEIEP-----------QN-------YGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 568 ~~~~~~~~p-----------~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
|.+++..-. +- ..++..+...+...|-.+.|..+++.+.+-++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 888775211 00 12234455558889999999999999998776
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.80 E-value=2.2e+02 Score=21.62 Aligned_cols=30 Identities=3% Similarity=-0.188 Sum_probs=15.6
Q ss_pred HHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 554 ASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
.|.+.|+.+.|.+-|+.=..+.|++....+
T Consensus 81 Lys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 81 LYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 345555555555555555555555443333
No 500
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.22 E-value=3.6e+02 Score=23.61 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCC--
Q 006627 330 RTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGL-- 407 (638)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 407 (638)
..+.++.+++....|..+..+-++.-+.+++-+.+- ..+-.+++..|.+..++.++.++++.+.+..+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444445556666665555544444332221 11223556677777888888888887766432
Q ss_pred ------------CCcccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627 408 ------------EVDVILKTALVDMYAKCGDVNGAYRLFSE 436 (638)
Q Consensus 408 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (638)
.+.-.+.|.-...+.+.|.++.|..++++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22234455555666666666666666654
Done!