Query 006627
Match_columns 638
No_of_seqs 608 out of 3314
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 04:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-40 6E-45 353.0 41.8 483 115-610 62-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.1E-39 7.1E-44 344.8 40.7 495 19-591 62-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-26 3.7E-31 232.5 40.0 371 217-594 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.1E-26 2.1E-30 227.0 39.5 355 246-609 5-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 5E-27 1.7E-31 238.1 21.8 182 343-525 28-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 5.8E-27 2E-31 237.7 19.9 211 258-490 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.3E-24 2.5E-28 220.6 31.6 440 138-610 7-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.2E-23 7.6E-28 216.9 32.6 395 210-609 7-445 (514)
9 3fp2_A TPR repeat-containing p 99.9 4.4E-22 1.5E-26 208.3 36.6 428 138-580 26-497 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 5.4E-22 1.9E-26 202.7 32.9 346 239-614 25-416 (450)
11 3fp2_A TPR repeat-containing p 99.9 2E-21 6.9E-26 203.3 34.8 477 37-593 26-535 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 2.3E-21 7.9E-26 198.0 34.1 364 208-598 25-444 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 1.1E-17 3.7E-22 179.4 51.2 534 8-603 723-1340(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 2.3E-19 7.9E-24 177.0 30.4 307 275-588 3-349 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 9.8E-19 3.4E-23 172.5 32.2 297 309-610 2-337 (359)
16 3hym_B Cell division cycle pro 99.8 1.3E-18 4.4E-23 169.5 29.5 287 307-596 19-322 (330)
17 3hym_B Cell division cycle pro 99.8 2.4E-18 8.1E-23 167.6 29.4 266 339-609 20-300 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 1.3E-15 4.3E-20 163.8 48.3 506 37-600 840-1376(1630)
19 1fch_A Peroxisomal targeting s 99.8 2.8E-18 9.5E-23 170.0 23.5 281 320-605 35-356 (368)
20 2ooe_A Cleavage stimulation fa 99.8 5.3E-16 1.8E-20 161.3 40.2 213 393-610 255-494 (530)
21 2xm6_A Protein corresponding t 99.8 3E-16 1E-20 161.4 37.2 378 208-604 38-467 (490)
22 4eqf_A PEX5-related protein; a 99.8 5.3E-18 1.8E-22 167.7 21.8 260 340-604 64-352 (365)
23 3cv0_A Peroxisome targeting si 99.8 1.8E-17 6E-22 161.2 22.2 259 343-606 23-313 (327)
24 2xm6_A Protein corresponding t 99.8 2.5E-15 8.7E-20 154.5 38.8 352 238-610 37-434 (490)
25 3mkr_A Coatomer subunit epsilo 99.8 2.3E-16 7.9E-21 149.4 28.4 272 317-602 6-288 (291)
26 1b89_A Protein (clathrin heavy 99.8 2.9E-17 9.9E-22 158.4 22.3 347 221-603 15-367 (449)
27 1b89_A Protein (clathrin heavy 99.8 1.7E-16 5.8E-21 153.0 24.3 283 118-434 15-305 (449)
28 1fch_A Peroxisomal targeting s 99.8 4.8E-17 1.7E-21 161.0 21.1 278 324-610 15-316 (368)
29 2ooe_A Cleavage stimulation fa 99.8 2.1E-15 7.1E-20 156.9 34.3 216 358-577 255-495 (530)
30 4g1t_A Interferon-induced prot 99.8 3.8E-16 1.3E-20 160.3 28.1 386 208-619 50-470 (472)
31 3mkr_A Coatomer subunit epsilo 99.7 7.5E-17 2.6E-21 152.8 20.4 248 348-610 6-266 (291)
32 4eqf_A PEX5-related protein; a 99.7 8.1E-17 2.8E-21 159.2 21.4 233 375-610 64-312 (365)
33 3cv0_A Peroxisome targeting si 99.7 4E-16 1.4E-20 151.5 18.1 154 421-577 148-318 (327)
34 2pl2_A Hypothetical conserved 99.7 7.7E-16 2.6E-20 139.2 18.5 196 408-606 2-212 (217)
35 4g1t_A Interferon-induced prot 99.7 1.6E-14 5.6E-19 148.1 29.6 384 170-586 49-471 (472)
36 3uq3_A Heat shock protein STI1 99.7 6.4E-15 2.2E-19 137.5 21.8 225 343-609 7-237 (258)
37 3uq3_A Heat shock protein STI1 99.7 4E-15 1.4E-19 138.9 19.0 236 310-588 5-256 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-14 3.7E-19 137.5 20.5 241 353-602 17-269 (275)
39 3u4t_A TPR repeat-containing p 99.6 1.5E-14 5.3E-19 136.2 21.0 247 313-594 6-270 (272)
40 3e4b_A ALGK; tetratricopeptide 99.6 2.2E-13 7.4E-18 137.8 27.9 370 213-635 39-451 (452)
41 3u4t_A TPR repeat-containing p 99.6 9.3E-14 3.2E-18 130.8 22.1 226 382-611 9-253 (272)
42 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.3E-18 128.2 22.0 198 411-610 37-240 (252)
43 3spa_A Mtrpol, DNA-directed RN 99.6 7.3E-16 2.5E-20 160.5 7.2 130 208-337 126-263 (1134)
44 3spa_A Mtrpol, DNA-directed RN 99.6 8.5E-16 2.9E-20 160.1 7.3 148 309-456 126-286 (1134)
45 2q7f_A YRRB protein; TPR, prot 99.6 2.7E-14 9.2E-19 131.9 16.5 200 386-589 33-237 (243)
46 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.4E-18 125.0 21.4 198 410-609 7-212 (225)
47 2h6f_A Protein farnesyltransfe 99.6 9.4E-14 3.2E-18 135.9 20.3 223 381-608 102-348 (382)
48 2q7f_A YRRB protein; TPR, prot 99.6 3E-14 1E-18 131.6 15.9 200 408-610 20-224 (243)
49 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-13 8.9E-18 137.2 23.7 345 245-611 8-390 (452)
50 2h6f_A Protein farnesyltransfe 99.6 2.7E-13 9.3E-18 132.6 22.4 247 341-592 97-366 (382)
51 1ouv_A Conserved hypothetical 99.6 6.6E-13 2.3E-17 125.0 24.1 224 340-609 5-252 (273)
52 3vtx_A MAMA; tetratricopeptide 99.6 1.6E-13 5.4E-18 120.6 18.6 167 441-610 4-172 (184)
53 2ho1_A Type 4 fimbrial biogene 99.6 5.3E-13 1.8E-17 124.0 22.3 208 342-584 38-248 (252)
54 2vq2_A PILW, putative fimbrial 99.5 9.7E-13 3.3E-17 119.7 21.9 204 379-585 11-222 (225)
55 2pl2_A Hypothetical conserved 99.5 7.2E-13 2.5E-17 119.6 19.9 204 342-571 6-211 (217)
56 4abn_A Tetratricopeptide repea 99.5 8.1E-14 2.8E-18 141.9 15.2 209 392-605 84-318 (474)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.6E-13 5.5E-18 129.4 16.2 221 386-610 15-246 (275)
58 1ouv_A Conserved hypothetical 99.5 3.3E-12 1.1E-16 120.2 25.0 230 309-579 5-256 (273)
59 4a1s_A PINS, partner of inscut 99.5 9.4E-14 3.2E-18 139.6 15.0 259 347-607 54-371 (411)
60 3ro2_A PINS homolog, G-protein 99.5 3.7E-13 1.3E-17 130.9 17.7 260 348-609 12-333 (338)
61 3sf4_A G-protein-signaling mod 99.5 5.5E-13 1.9E-17 133.6 18.9 269 310-578 9-340 (406)
62 4e6h_A MRNA 3'-END-processing 99.5 3.8E-10 1.3E-14 117.9 36.2 417 135-580 64-576 (679)
63 3sf4_A G-protein-signaling mod 99.4 8.3E-13 2.8E-17 132.3 14.8 267 273-539 7-333 (406)
64 3vtx_A MAMA; tetratricopeptide 99.4 3.1E-12 1.1E-16 112.3 16.3 167 410-579 4-175 (184)
65 3as5_A MAMA; tetratricopeptide 99.4 2E-12 7E-17 113.5 14.1 165 445-612 11-177 (186)
66 4gyw_A UDP-N-acetylglucosamine 99.4 2.4E-12 8.1E-17 136.2 16.0 163 442-607 9-173 (723)
67 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.4E-17 125.6 12.9 242 342-608 28-307 (311)
68 2ond_A Cleavage stimulation fa 99.4 4.8E-11 1.6E-15 114.2 23.0 217 358-578 33-274 (308)
69 3ulq_A Response regulator aspa 99.4 5.5E-12 1.9E-16 125.2 16.8 222 385-607 112-367 (383)
70 4e6h_A MRNA 3'-END-processing 99.4 1.1E-09 3.9E-14 114.3 34.4 436 153-612 48-574 (679)
71 2ond_A Cleavage stimulation fa 99.4 9.1E-11 3.1E-15 112.3 24.1 213 393-610 33-272 (308)
72 4i17_A Hypothetical protein; T 99.4 1.9E-11 6.4E-16 111.5 17.7 167 442-610 7-211 (228)
73 4a1s_A PINS, partner of inscut 99.4 3.2E-12 1.1E-16 128.3 13.7 135 443-577 224-375 (411)
74 4i17_A Hypothetical protein; T 99.4 3.3E-11 1.1E-15 109.9 18.0 206 374-590 5-225 (228)
75 3ro2_A PINS homolog, G-protein 99.3 1E-11 3.5E-16 120.6 15.2 134 444-577 185-335 (338)
76 3ulq_A Response regulator aspa 99.3 5.4E-11 1.8E-15 118.0 20.0 229 348-576 110-370 (383)
77 4abn_A Tetratricopeptide repea 99.3 1.6E-11 5.6E-16 124.9 15.8 180 427-610 84-289 (474)
78 1hz4_A MALT regulatory protein 99.3 7.8E-10 2.7E-14 109.2 27.5 256 351-606 24-320 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 7E-11 2.4E-15 103.5 17.1 169 411-582 8-181 (186)
80 3q15_A PSP28, response regulat 99.3 4.4E-11 1.5E-15 118.3 17.5 221 386-607 111-364 (378)
81 3nf1_A KLC 1, kinesin light ch 99.2 2.4E-11 8.3E-16 116.6 10.2 237 310-577 27-310 (311)
82 3edt_B KLC 2, kinesin light ch 99.2 2.1E-10 7.2E-15 108.2 16.2 208 376-607 43-280 (283)
83 2yhc_A BAMD, UPF0169 lipoprote 99.2 8.2E-10 2.8E-14 100.1 19.5 184 413-615 6-220 (225)
84 3q15_A PSP28, response regulat 99.2 3.7E-09 1.3E-13 104.5 24.4 228 348-575 108-366 (378)
85 1qqe_A Vesicular transport pro 99.2 2.6E-10 8.9E-15 108.1 15.3 162 444-605 79-266 (292)
86 3mv2_B Coatomer subunit epsilo 99.2 1.7E-09 6E-14 99.9 19.3 245 317-583 20-291 (310)
87 3qky_A Outer membrane assembly 99.2 5.9E-10 2E-14 103.8 16.4 185 409-610 13-226 (261)
88 4ga2_A E3 SUMO-protein ligase 99.2 2.5E-11 8.6E-16 102.0 6.2 140 451-594 6-149 (150)
89 4gyw_A UDP-N-acetylglucosamine 99.1 2.8E-10 9.6E-15 120.4 14.4 166 409-577 7-177 (723)
90 2fo7_A Synthetic consensus TPR 99.1 9E-10 3.1E-14 90.5 14.4 128 480-609 4-133 (136)
91 1qqe_A Vesicular transport pro 99.1 1.6E-09 5.5E-14 102.6 18.0 226 325-587 32-282 (292)
92 3qky_A Outer membrane assembly 99.1 7.3E-10 2.5E-14 103.2 15.0 204 374-599 13-252 (261)
93 2pzi_A Probable serine/threoni 99.1 4.4E-10 1.5E-14 119.7 13.8 145 443-591 434-580 (681)
94 1hz4_A MALT regulatory protein 99.1 5.5E-08 1.9E-12 95.8 27.4 191 314-504 97-320 (373)
95 3mv2_B Coatomer subunit epsilo 99.1 7.2E-09 2.5E-13 95.8 19.0 241 348-610 20-284 (310)
96 3qou_A Protein YBBN; thioredox 99.1 1.8E-09 6.1E-14 101.9 15.3 172 431-606 106-282 (287)
97 4ga2_A E3 SUMO-protein ligase 99.1 1.6E-10 5.6E-15 97.0 6.1 125 483-610 3-131 (150)
98 2fo7_A Synthetic consensus TPR 99.1 5.3E-09 1.8E-13 85.8 15.2 132 444-578 3-136 (136)
99 2vsy_A XCC0866; transferase, g 99.0 2.6E-09 8.9E-14 111.8 15.8 160 424-586 2-169 (568)
100 2r5s_A Uncharacterized protein 99.0 1.9E-09 6.4E-14 93.4 11.8 159 445-607 9-172 (176)
101 3rjv_A Putative SEL1 repeat pr 99.0 2.1E-08 7.3E-13 89.6 18.9 162 440-610 16-199 (212)
102 3urz_A Uncharacterized protein 99.0 6.5E-09 2.2E-13 92.7 14.8 130 446-578 58-190 (208)
103 3dra_A Protein farnesyltransfe 99.0 1E-07 3.4E-12 89.3 22.7 210 394-607 51-286 (306)
104 3gyz_A Chaperone protein IPGC; 99.0 3E-09 1E-13 88.6 10.6 98 513-610 36-135 (151)
105 2pzi_A Probable serine/threoni 99.0 2E-08 6.9E-13 106.9 19.7 169 387-560 402-583 (681)
106 4gco_A Protein STI-1; structur 99.0 4.4E-09 1.5E-13 85.0 11.0 109 478-588 14-124 (126)
107 3edt_B KLC 2, kinesin light ch 99.0 1.9E-09 6.6E-14 101.5 9.8 149 460-608 26-198 (283)
108 3urz_A Uncharacterized protein 98.9 7.3E-09 2.5E-13 92.4 13.0 158 448-610 10-188 (208)
109 4gco_A Protein STI-1; structur 98.9 6.9E-09 2.4E-13 83.8 10.6 102 509-610 8-112 (126)
110 2ifu_A Gamma-SNAP; membrane fu 98.9 1.9E-08 6.5E-13 95.9 15.1 218 354-601 4-254 (307)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.4E-08 8.3E-13 89.5 15.0 129 444-578 8-154 (213)
112 2vgx_A Chaperone SYCD; alterna 98.9 3.1E-09 1.1E-13 88.8 8.1 97 513-609 21-119 (148)
113 3qou_A Protein YBBN; thioredox 98.9 1.9E-08 6.5E-13 94.8 14.4 136 474-611 114-251 (287)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 1.3E-08 4.6E-13 97.0 13.5 197 388-606 3-222 (307)
115 3u3w_A Transcriptional activat 98.9 1.8E-07 6.2E-12 88.5 20.5 160 448-607 81-265 (293)
116 2vsy_A XCC0866; transferase, g 98.9 2.3E-08 7.9E-13 104.6 15.5 146 390-539 3-154 (568)
117 1a17_A Serine/threonine protei 98.8 3.6E-08 1.2E-12 84.2 13.2 128 478-607 14-145 (166)
118 2qfc_A PLCR protein; TPR, HTH, 98.8 5.6E-08 1.9E-12 92.0 15.1 162 445-606 78-264 (293)
119 2e2e_A Formate-dependent nitri 98.8 1.3E-08 4.5E-13 88.2 9.6 126 453-581 21-151 (177)
120 2yhc_A BAMD, UPF0169 lipoprote 98.8 1E-07 3.6E-12 86.1 15.8 183 376-580 4-219 (225)
121 2c2l_A CHIP, carboxy terminus 98.8 9.4E-09 3.2E-13 96.5 8.9 191 411-608 4-199 (281)
122 2uy1_A Cleavage stimulation fa 98.8 4.2E-06 1.4E-10 84.9 29.0 369 149-573 6-412 (493)
123 2lni_A Stress-induced-phosphop 98.8 4.9E-08 1.7E-12 79.7 12.3 117 476-594 15-133 (133)
124 2r5s_A Uncharacterized protein 98.8 7.3E-08 2.5E-12 83.3 13.6 156 414-573 9-172 (176)
125 3dra_A Protein farnesyltransfe 98.8 4.2E-06 1.4E-10 78.3 26.3 228 355-588 47-302 (306)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.2E-07 7.5E-12 83.1 17.2 129 414-545 9-154 (213)
127 2xcb_A PCRH, regulatory protei 98.8 2.1E-08 7.3E-13 83.1 9.3 95 514-608 19-115 (142)
128 2vyi_A SGTA protein; chaperone 98.8 5.1E-08 1.7E-12 79.2 11.1 117 477-595 12-130 (131)
129 1na0_A Designed protein CTPR3; 98.8 8.4E-08 2.9E-12 77.2 12.2 115 477-593 9-125 (125)
130 2uy1_A Cleavage stimulation fa 98.8 1.5E-06 5.1E-11 88.1 24.0 352 223-607 28-412 (493)
131 1p5q_A FKBP52, FK506-binding p 98.7 5.7E-08 2E-12 93.7 12.5 126 478-606 148-292 (336)
132 1hxi_A PEX5, peroxisome target 98.7 3.7E-08 1.3E-12 78.9 8.8 96 515-610 19-116 (121)
133 3gyz_A Chaperone protein IPGC; 98.7 1.2E-07 4E-12 78.9 11.9 105 473-579 31-138 (151)
134 3upv_A Heat shock protein STI1 98.7 7E-08 2.4E-12 78.0 10.2 94 515-608 6-101 (126)
135 2kck_A TPR repeat; tetratricop 98.7 6.4E-08 2.2E-12 76.2 9.4 100 513-612 6-110 (112)
136 2vgx_A Chaperone SYCD; alterna 98.7 5.4E-08 1.9E-12 81.1 8.9 110 474-585 17-129 (148)
137 2fbn_A 70 kDa peptidylprolyl i 98.7 1.4E-08 4.8E-13 89.9 5.4 129 479-607 40-185 (198)
138 3rjv_A Putative SEL1 repeat pr 98.7 9.1E-07 3.1E-11 78.9 17.2 175 395-577 5-200 (212)
139 4f3v_A ESX-1 secretion system 98.7 1.7E-07 5.9E-12 85.5 12.0 192 388-585 18-247 (282)
140 3sz7_A HSC70 cochaperone (SGT) 98.6 1.2E-07 4.2E-12 80.7 10.3 111 476-588 10-122 (164)
141 2e2e_A Formate-dependent nitri 98.6 1.9E-07 6.6E-12 80.7 11.6 124 487-612 20-148 (177)
142 4gcn_A Protein STI-1; structur 98.6 8.8E-08 3E-12 77.4 8.5 94 515-608 10-112 (127)
143 3q49_B STIP1 homology and U bo 98.6 2.4E-07 8.3E-12 76.0 11.3 96 513-608 9-106 (137)
144 4f3v_A ESX-1 secretion system 98.6 3.8E-07 1.3E-11 83.2 13.2 190 353-548 18-244 (282)
145 1elw_A TPR1-domain of HOP; HOP 98.6 5.3E-07 1.8E-11 71.5 12.4 109 478-588 5-115 (118)
146 2lni_A Stress-induced-phosphop 98.6 3.2E-07 1.1E-11 74.8 11.3 100 511-610 14-115 (133)
147 3q7a_A Farnesyltransferase alp 98.6 4.3E-06 1.5E-10 79.0 20.2 33 576-608 299-331 (349)
148 1elw_A TPR1-domain of HOP; HOP 98.6 3.2E-07 1.1E-11 72.8 10.9 99 512-610 3-103 (118)
149 2xcb_A PCRH, regulatory protei 98.6 2.8E-07 9.7E-12 76.2 10.6 109 478-588 19-129 (142)
150 3upv_A Heat shock protein STI1 98.6 3.5E-07 1.2E-11 73.9 10.8 112 478-591 5-124 (126)
151 3u3w_A Transcriptional activat 98.6 3.5E-06 1.2E-10 79.5 19.3 158 417-574 81-266 (293)
152 2dba_A Smooth muscle cell asso 98.6 5.4E-07 1.9E-11 75.0 11.9 110 476-588 27-142 (148)
153 2qfc_A PLCR protein; TPR, HTH, 98.6 1.7E-06 5.7E-11 81.8 16.6 162 413-574 77-266 (293)
154 1na0_A Designed protein CTPR3; 98.5 5E-07 1.7E-11 72.5 10.7 98 513-610 9-108 (125)
155 3gw4_A Uncharacterized protein 98.5 9.4E-07 3.2E-11 78.2 13.5 61 547-607 109-175 (203)
156 3sz7_A HSC70 cochaperone (SGT) 98.5 6.7E-07 2.3E-11 76.1 11.8 96 513-608 11-108 (164)
157 2xev_A YBGF; tetratricopeptide 98.5 4E-07 1.4E-11 73.8 9.6 61 547-607 41-104 (129)
158 2hr2_A Hypothetical protein; a 98.5 3.8E-07 1.3E-11 74.8 8.7 61 547-607 59-130 (159)
159 2vyi_A SGTA protein; chaperone 98.5 8.3E-07 2.8E-11 71.9 10.7 99 512-610 11-111 (131)
160 2dba_A Smooth muscle cell asso 98.5 1.6E-06 5.5E-11 72.0 12.8 100 511-610 26-130 (148)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.1E-06 3.9E-11 88.5 13.4 95 513-607 317-414 (457)
162 3q49_B STIP1 homology and U bo 98.5 9.1E-07 3.1E-11 72.5 10.5 115 475-591 7-128 (137)
163 3k9i_A BH0479 protein; putativ 98.5 1.3E-07 4.6E-12 75.1 4.7 82 527-608 4-90 (117)
164 1a17_A Serine/threonine protei 98.5 2.3E-06 7.8E-11 72.8 12.9 127 444-573 15-145 (166)
165 3q7a_A Farnesyltransferase alp 98.4 0.00014 4.9E-09 68.7 25.3 232 351-588 64-346 (349)
166 3dss_A Geranylgeranyl transfer 98.4 2.6E-05 8.9E-10 73.4 19.9 117 352-471 40-174 (331)
167 2if4_A ATFKBP42; FKBP-like, al 98.4 5.8E-07 2E-11 86.6 8.8 151 443-613 180-333 (338)
168 3gw4_A Uncharacterized protein 98.4 7.9E-06 2.7E-10 72.1 15.6 27 548-574 150-176 (203)
169 3rkv_A Putative peptidylprolyl 98.4 8.5E-07 2.9E-11 75.2 8.5 113 477-589 11-142 (162)
170 2c2l_A CHIP, carboxy terminus 98.4 2.6E-06 9E-11 79.7 12.6 188 377-574 5-199 (281)
171 1wao_1 Serine/threonine protei 98.4 6.4E-07 2.2E-11 90.7 9.0 119 483-603 12-134 (477)
172 2fbn_A 70 kDa peptidylprolyl i 98.4 2.8E-07 9.7E-12 81.3 5.3 121 488-610 15-153 (198)
173 1elr_A TPR2A-domain of HOP; HO 98.4 1.3E-06 4.4E-11 70.7 8.7 110 478-590 5-123 (131)
174 3dss_A Geranylgeranyl transfer 98.3 8.2E-05 2.8E-09 70.0 21.6 95 357-453 90-190 (331)
175 1elr_A TPR2A-domain of HOP; HO 98.3 8.4E-07 2.9E-11 71.9 7.2 92 516-607 7-107 (131)
176 4gcn_A Protein STI-1; structur 98.3 1.8E-06 6E-11 69.6 9.0 96 480-577 11-115 (127)
177 2kck_A TPR repeat; tetratricop 98.3 3.4E-06 1.2E-10 65.9 10.5 100 478-579 7-111 (112)
178 2xev_A YBGF; tetratricopeptide 98.3 4.4E-06 1.5E-10 67.4 11.3 105 482-588 7-119 (129)
179 1ihg_A Cyclophilin 40; ppiase 98.3 2.3E-06 7.8E-11 83.4 11.0 90 512-601 272-363 (370)
180 1hxi_A PEX5, peroxisome target 98.3 2.4E-06 8.2E-11 68.1 8.9 98 480-579 20-119 (121)
181 3rkv_A Putative peptidylprolyl 98.3 1.3E-06 4.5E-11 74.1 7.8 93 517-609 15-127 (162)
182 1dce_A Protein (RAB geranylger 98.3 1.5E-05 5E-10 82.2 16.8 168 427-597 45-244 (567)
183 3ro3_A PINS homolog, G-protein 98.3 1.7E-06 5.8E-11 73.1 8.4 128 480-607 12-157 (164)
184 1p5q_A FKBP52, FK506-binding p 98.3 2.2E-06 7.7E-11 82.5 9.5 118 490-610 126-261 (336)
185 4b4t_Q 26S proteasome regulato 98.3 8.6E-06 3E-10 81.8 14.1 163 445-607 58-244 (434)
186 3bee_A Putative YFRE protein; 98.2 6.1E-06 2.1E-10 61.6 8.8 73 542-615 3-78 (93)
187 2hr2_A Hypothetical protein; a 98.2 2.5E-06 8.4E-11 70.1 7.1 108 481-588 15-145 (159)
188 3ma5_A Tetratricopeptide repea 98.2 5.9E-06 2E-10 63.2 8.4 65 544-608 6-70 (100)
189 3k9i_A BH0479 protein; putativ 98.2 1.2E-06 4.1E-11 69.5 4.2 94 490-584 3-100 (117)
190 2l6j_A TPR repeat-containing p 98.2 6E-07 2.1E-11 70.4 2.4 93 512-604 3-103 (111)
191 1wao_1 Serine/threonine protei 98.1 8.8E-06 3E-10 82.4 10.8 117 418-537 13-134 (477)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 8.1E-06 2.8E-10 78.6 10.0 153 411-580 179-334 (338)
193 1zu2_A Mitochondrial import re 98.1 2E-06 6.7E-11 70.5 4.2 50 561-610 62-122 (158)
194 2kat_A Uncharacterized protein 98.1 8.3E-06 2.8E-10 64.3 7.6 62 545-606 19-80 (115)
195 3n71_A Histone lysine methyltr 98.1 1.8E-05 6.3E-10 79.4 11.2 123 487-609 319-465 (490)
196 4b4t_Q 26S proteasome regulato 98.1 4.7E-05 1.6E-09 76.3 14.4 158 450-607 12-203 (434)
197 1na3_A Designed protein CTPR2; 98.0 1.7E-05 5.7E-10 59.2 8.1 80 514-593 10-91 (91)
198 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 1.4E-05 4.6E-10 80.6 9.4 114 478-610 269-382 (457)
199 1ihg_A Cyclophilin 40; ppiase 98.0 1.5E-05 5.1E-10 77.6 9.3 115 477-610 223-338 (370)
200 3ro3_A PINS homolog, G-protein 98.0 2.7E-05 9.2E-10 65.5 9.8 132 445-576 12-160 (164)
201 1dce_A Protein (RAB geranylger 98.0 0.00018 6E-09 74.2 16.7 153 456-611 43-224 (567)
202 2l6j_A TPR repeat-containing p 97.9 2.6E-05 8.9E-10 60.8 8.0 68 544-611 3-70 (111)
203 1klx_A Cysteine rich protein B 97.9 0.00011 3.7E-09 59.9 10.9 90 519-610 31-128 (138)
204 1zu2_A Mitochondrial import re 97.8 1.5E-05 5E-10 65.3 4.6 50 530-579 63-125 (158)
205 1na3_A Designed protein CTPR2; 97.8 6.6E-05 2.2E-09 55.9 7.5 67 544-610 8-74 (91)
206 2kat_A Uncharacterized protein 97.7 8.7E-05 3E-09 58.3 7.2 82 495-578 3-86 (115)
207 3lvg_A Clathrin heavy chain 1; 97.7 4.7E-05 1.6E-09 73.0 6.1 429 9-499 53-534 (624)
208 1klx_A Cysteine rich protein B 97.6 0.00071 2.4E-08 55.0 11.7 112 456-576 9-128 (138)
209 2kc7_A BFR218_protein; tetratr 97.6 0.00018 6E-09 54.6 6.9 80 519-606 6-88 (99)
210 2kc7_A BFR218_protein; tetratr 97.5 9.8E-05 3.3E-09 56.1 5.2 54 554-607 9-63 (99)
211 3ly7_A Transcriptional activat 97.4 0.005 1.7E-07 58.1 15.7 119 458-578 215-343 (372)
212 3n71_A Histone lysine methyltr 97.4 0.00088 3E-08 67.2 11.3 132 350-506 318-464 (490)
213 3lvg_A Clathrin heavy chain 1; 97.4 6.1E-05 2.1E-09 72.2 2.3 366 208-603 53-478 (624)
214 3u64_A Protein TP_0956; tetrat 97.2 0.00086 3E-08 60.4 8.0 86 530-615 180-276 (301)
215 1qsa_A Protein (soluble lytic 97.2 0.27 9.1E-06 50.7 27.4 251 313-573 75-347 (618)
216 3ma5_A Tetratricopeptide repea 97.2 0.0012 4E-08 50.1 7.7 64 441-505 6-69 (100)
217 3qww_A SET and MYND domain-con 97.2 0.00052 1.8E-08 67.7 6.6 85 489-573 310-410 (433)
218 3ly7_A Transcriptional activat 97.1 0.0039 1.3E-07 58.9 11.8 133 474-610 191-341 (372)
219 1pc2_A Mitochondria fission pr 97.1 0.0012 4.2E-08 53.3 6.8 95 490-586 11-112 (152)
220 3qwp_A SET and MYND domain-con 97.0 0.0011 3.9E-08 65.4 7.3 102 484-585 294-416 (429)
221 1pc2_A Mitochondria fission pr 97.0 0.0025 8.6E-08 51.5 7.8 65 543-607 30-99 (152)
222 3qww_A SET and MYND domain-con 97.0 0.0034 1.1E-07 61.9 10.4 59 547-605 342-408 (433)
223 1wy6_A Hypothetical protein ST 96.9 0.054 1.8E-06 41.9 14.0 140 453-611 18-157 (172)
224 4ady_A RPN2, 26S proteasome re 96.9 0.62 2.1E-05 49.8 31.8 258 216-480 381-664 (963)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0047 1.6E-07 47.0 8.5 72 515-586 7-87 (104)
226 3qwp_A SET and MYND domain-con 96.9 0.0065 2.2E-07 60.0 11.5 84 523-606 297-398 (429)
227 3bee_A Putative YFRE protein; 96.7 0.014 4.7E-07 43.2 9.4 75 510-585 3-82 (93)
228 3mkq_A Coatomer beta'-subunit; 96.6 0.092 3.1E-06 57.1 19.8 114 319-467 661-774 (814)
229 2v5f_A Prolyl 4-hydroxylase su 96.5 0.0094 3.2E-07 45.3 7.4 67 544-610 4-77 (104)
230 1nzn_A CGI-135 protein, fissio 96.2 0.046 1.6E-06 42.4 9.8 76 511-586 33-115 (126)
231 3mkq_A Coatomer beta'-subunit; 96.0 0.15 5.1E-06 55.5 16.8 154 350-539 608-762 (814)
232 4h7y_A Dual specificity protei 95.9 0.033 1.1E-06 44.2 7.8 103 474-579 10-128 (161)
233 1nzn_A CGI-135 protein, fissio 95.9 0.027 9.4E-07 43.6 7.2 69 542-610 32-105 (126)
234 3mkq_B Coatomer subunit alpha; 95.7 0.48 1.6E-05 39.3 14.3 103 420-540 14-116 (177)
235 4gns_B Protein CSD3, chitin bi 95.5 0.044 1.5E-06 57.4 9.6 55 551-605 343-397 (754)
236 3u64_A Protein TP_0956; tetrat 95.5 0.02 6.7E-07 51.7 5.9 103 494-605 180-295 (301)
237 1wy6_A Hypothetical protein ST 95.2 0.79 2.7E-05 35.6 14.2 138 351-510 17-157 (172)
238 4ady_A RPN2, 26S proteasome re 95.2 4.1 0.00014 43.7 30.4 27 139-165 232-258 (963)
239 4b4t_P 26S proteasome regulato 95.1 1.1 3.6E-05 44.4 17.7 258 50-340 30-325 (445)
240 4h7y_A Dual specificity protei 94.8 0.2 6.8E-06 39.9 9.1 103 439-544 10-126 (161)
241 1y8m_A FIS1; mitochondria, unk 94.5 0.36 1.2E-05 38.1 9.8 76 510-585 36-117 (144)
242 3o48_A Mitochondria fission 1 94.3 0.14 4.9E-06 39.7 7.1 76 510-585 37-118 (134)
243 3lpz_A GET4 (YOR164C homolog); 93.7 4.3 0.00015 37.6 19.4 170 108-303 37-215 (336)
244 3mkq_B Coatomer subunit alpha; 93.3 3 0.0001 34.6 15.7 99 320-435 15-113 (177)
245 2wpv_A GET4, UPF0363 protein Y 92.8 5.9 0.0002 36.5 18.1 170 108-303 35-216 (312)
246 2ff4_A Probable regulatory pro 92.7 0.19 6.6E-06 48.7 6.9 70 547-616 173-247 (388)
247 1y8m_A FIS1; mitochondria, unk 92.6 1.6 5.4E-05 34.5 10.5 69 542-610 36-108 (144)
248 3ffl_A Anaphase-promoting comp 92.6 0.6 2E-05 38.0 8.3 121 471-605 12-148 (167)
249 3o48_A Mitochondria fission 1 92.4 0.66 2.3E-05 36.1 8.0 70 474-544 37-110 (134)
250 4b4t_P 26S proteasome regulato 91.0 13 0.00044 36.6 21.2 95 445-539 140-244 (445)
251 2ff4_A Probable regulatory pro 90.9 1.6 5.6E-05 42.1 11.2 66 42-108 177-247 (388)
252 3lpz_A GET4 (YOR164C homolog); 90.7 10 0.00036 35.1 20.0 169 413-608 37-216 (336)
253 2wpv_A GET4, UPF0363 protein Y 90.5 11 0.00036 34.8 19.0 170 209-404 33-216 (312)
254 3ffl_A Anaphase-promoting comp 90.0 1.8 6.2E-05 35.2 8.7 27 514-540 123-149 (167)
255 4fhn_B Nucleoporin NUP120; pro 87.2 12 0.0004 42.2 16.2 53 314-367 816-868 (1139)
256 1zbp_A Hypothetical protein VP 87.1 2.3 7.9E-05 37.8 8.1 51 487-539 7-57 (273)
257 1zbp_A Hypothetical protein VP 86.7 4.1 0.00014 36.3 9.5 119 451-580 6-135 (273)
258 4gns_B Protein CSD3, chitin bi 86.5 19 0.00066 37.8 16.0 50 452-503 347-397 (754)
259 1v54_E Cytochrome C oxidase po 86.3 3 0.0001 30.4 6.8 61 459-521 27-87 (109)
260 3txn_A 26S proteasome regulato 86.2 22 0.00075 34.0 15.1 163 377-539 20-207 (394)
261 3txn_A 26S proteasome regulato 85.9 25 0.00085 33.7 20.2 125 311-436 20-164 (394)
262 1v54_E Cytochrome C oxidase po 85.3 3.8 0.00013 29.9 6.9 60 54-114 28-87 (109)
263 2uwj_G Type III export protein 84.3 9.9 0.00034 27.6 8.5 87 391-482 21-107 (115)
264 2p58_C Putative type III secre 83.6 11 0.00037 27.5 9.2 86 391-481 22-107 (116)
265 4fhn_B Nucleoporin NUP120; pro 81.4 14 0.00047 41.6 13.4 52 448-504 818-869 (1139)
266 3ltm_A Alpha-REP4; protein eng 80.1 27 0.00092 29.7 18.6 91 409-504 93-183 (211)
267 2y69_E Cytochrome C oxidase su 79.4 7 0.00024 30.3 6.8 60 460-521 71-130 (152)
268 3esl_A Checkpoint serine/threo 79.3 16 0.00056 30.8 9.8 46 529-574 95-144 (202)
269 1qsa_A Protein (soluble lytic 79.1 61 0.0021 33.3 35.9 338 210-572 73-440 (618)
270 2y69_E Cytochrome C oxidase su 78.2 8.4 0.00029 29.9 6.9 44 90-133 72-115 (152)
271 2uwj_G Type III export protein 77.9 18 0.0006 26.3 9.9 86 85-175 20-105 (115)
272 2p58_C Putative type III secre 77.3 18 0.00063 26.3 9.4 86 85-175 21-106 (116)
273 3mv2_A Coatomer subunit alpha; 77.2 32 0.0011 31.5 11.7 59 535-607 195-255 (325)
274 3ltm_A Alpha-REP4; protein eng 74.4 39 0.0013 28.6 18.7 167 309-487 32-198 (211)
275 3ltj_A Alpharep-4; protein eng 72.1 43 0.0015 28.1 18.9 47 310-356 28-74 (201)
276 4b4t_R RPN7, 26S proteasome re 71.9 22 0.00077 34.6 10.4 95 412-506 132-237 (429)
277 4a1g_A Mitotic checkpoint seri 71.4 37 0.0013 27.2 9.5 46 564-609 84-131 (152)
278 4b4t_R RPN7, 26S proteasome re 70.4 19 0.00066 35.1 9.6 96 37-132 132-234 (429)
279 1wdy_A 2-5A-dependent ribonucl 69.3 62 0.0021 28.8 12.6 22 288-309 192-213 (285)
280 3kae_A CDC27, possible protein 68.0 48 0.0016 27.0 9.7 49 557-605 74-140 (242)
281 1wdy_A 2-5A-dependent ribonucl 65.3 74 0.0025 28.2 12.9 48 388-435 191-240 (285)
282 2wvi_A Mitotic checkpoint seri 65.0 45 0.0015 27.1 8.9 31 545-575 96-126 (164)
283 3ltj_A Alpharep-4; protein eng 64.1 63 0.0022 27.0 19.3 148 332-491 19-166 (201)
284 2d2s_A Exocyst complex compone 63.0 39 0.0013 29.5 9.0 40 25-64 7-46 (235)
285 3esl_A Checkpoint serine/threo 60.9 70 0.0024 27.0 9.6 56 456-512 93-149 (202)
286 2zu6_B Programmed cell death p 58.0 37 0.0013 31.1 8.3 65 314-378 170-239 (307)
287 2nsz_A Programmed cell death p 56.8 47 0.0016 25.7 7.6 55 13-67 10-74 (129)
288 4b4t_S RPN3, 26S proteasome re 54.2 35 0.0012 33.8 7.8 62 478-539 232-296 (523)
289 2qx5_A Nucleoporin NIC96; mRNA 53.3 2.1E+02 0.0072 29.6 21.4 39 214-252 157-198 (661)
290 4b4t_S RPN3, 26S proteasome re 50.7 43 0.0015 33.2 7.8 67 513-579 231-304 (523)
291 3jxi_A Vanilloid receptor-rela 50.1 1.2E+02 0.004 26.6 10.5 91 146-237 11-118 (260)
292 4gq2_M Nucleoporin NUP120; bet 49.8 1.4E+02 0.0047 32.8 12.5 85 483-573 816-925 (950)
293 2ion_A PDCD4, programmed cell 49.4 39 0.0013 27.1 6.2 55 13-67 12-76 (152)
294 2qx5_A Nucleoporin NIC96; mRNA 47.7 2.5E+02 0.0087 29.0 17.1 44 138-183 154-197 (661)
295 1oyz_A Hypothetical protein YI 47.6 1.5E+02 0.0052 26.3 20.9 20 337-356 138-157 (280)
296 4aez_C MAD3, mitotic spindle c 47.0 65 0.0022 27.7 7.4 31 545-575 150-180 (223)
297 3hra_A Ankyrin repeat family p 46.9 1E+02 0.0035 25.4 9.2 16 117-132 13-28 (201)
298 3bqo_A Telomeric repeat-bindin 44.4 54 0.0018 27.4 6.1 49 552-600 124-172 (211)
299 2d2s_A Exocyst complex compone 44.1 84 0.0029 27.4 8.0 22 247-268 25-46 (235)
300 4a1g_A Mitotic checkpoint seri 43.1 1.3E+02 0.0043 24.1 8.7 53 459-512 82-135 (152)
301 1k1a_A B-cell lymphoma 3-encod 43.0 1.6E+02 0.0054 25.2 11.4 26 146-171 15-40 (241)
302 1ya0_A SMG-7 transcript varian 43.0 58 0.002 32.4 7.5 57 550-606 157-213 (497)
303 1k1a_A B-cell lymphoma 3-encod 42.8 1.6E+02 0.0054 25.1 12.4 25 249-273 15-39 (241)
304 3jxi_A Vanilloid receptor-rela 42.6 73 0.0025 27.9 7.8 54 248-301 10-72 (260)
305 3b7b_A Euchromatic histone-lys 40.5 1.4E+02 0.0048 25.4 9.3 23 281-303 213-235 (237)
306 3mkr_B Coatomer subunit alpha; 39.5 93 0.0032 28.5 7.6 108 452-577 112-230 (320)
307 2zu6_B Programmed cell death p 38.2 1.8E+02 0.0063 26.5 9.6 66 344-410 169-236 (307)
308 1wgl_A TOLL-interacting protei 36.8 40 0.0014 21.8 3.5 49 565-614 10-58 (59)
309 2ion_A PDCD4, programmed cell 36.7 1.5E+02 0.0052 23.6 7.8 63 314-376 13-80 (152)
310 3ljn_A Hypothetical protein; a 36.2 1.6E+02 0.0054 27.4 9.5 49 220-268 61-109 (364)
311 2wvi_A Mitotic checkpoint seri 36.0 1.7E+02 0.0059 23.7 8.9 53 460-513 78-131 (164)
312 3kea_A K1L; tropism, ANK repea 35.8 2.4E+02 0.0081 25.1 11.0 77 214-299 163-242 (285)
313 3qil_A Clathrin heavy chain 1; 35.5 6.9 0.00023 29.6 -0.3 68 20-90 16-83 (125)
314 1n11_A Ankyrin; clathrin, BAND 35.4 3E+02 0.01 26.3 15.3 16 219-234 120-135 (437)
315 4aez_C MAD3, mitotic spindle c 33.1 1.9E+02 0.0064 24.9 8.0 59 88-146 131-190 (223)
316 2cfu_A SDSA1; SDS-hydrolase, l 32.6 68 0.0023 33.3 6.5 63 529-594 436-498 (658)
317 2nsz_A Programmed cell death p 32.4 1.7E+02 0.0058 22.5 9.1 63 314-376 11-78 (129)
318 3kea_A K1L; tropism, ANK repea 32.2 2.6E+02 0.0087 24.9 9.8 14 423-436 204-217 (285)
319 3ljn_A Hypothetical protein; a 31.8 1.5E+02 0.005 27.7 8.4 16 421-436 180-195 (364)
320 2r9g_A AAA ATPase, central reg 31.6 2.3E+02 0.0079 23.8 9.3 63 243-306 14-84 (204)
321 2fu4_A Ferric uptake regulatio 30.7 1.3E+02 0.0044 20.6 6.1 61 60-121 6-67 (83)
322 3hra_A Ankyrin repeat family p 30.7 1.7E+02 0.0059 24.0 8.0 13 117-129 80-92 (201)
323 2rfa_A Transient receptor pote 30.6 2.1E+02 0.0073 24.1 8.8 19 17-35 7-25 (232)
324 3d5l_A Regulatory protein RECX 28.8 1.6E+02 0.0055 25.3 7.2 100 3-103 40-142 (221)
325 1n11_A Ankyrin; clathrin, BAND 28.6 3.9E+02 0.013 25.5 15.4 21 15-35 16-36 (437)
326 3eu9_A Huntingtin-interacting 28.4 2E+02 0.0068 24.3 8.2 20 113-132 46-65 (240)
327 2r9g_A AAA ATPase, central reg 28.4 2.7E+02 0.0091 23.4 9.7 62 346-408 16-85 (204)
328 3bu8_A Telomeric repeat-bindin 28.3 2.8E+02 0.0095 23.6 8.3 47 459-505 89-142 (235)
329 3aji_A 26S proteasome non-ATPa 28.0 2.4E+02 0.0083 23.7 8.7 13 221-233 148-160 (231)
330 3eu9_A Huntingtin-interacting 27.4 2.8E+02 0.0095 23.4 10.7 15 220-234 17-31 (240)
331 3bge_A Predicted ATPase; struc 27.1 2.2E+02 0.0075 23.9 7.2 45 245-289 9-56 (201)
332 3bge_A Predicted ATPase; struc 27.1 2.6E+02 0.0089 23.4 7.6 44 347-390 10-56 (201)
333 3bqo_A Telomeric repeat-bindin 27.0 2.6E+02 0.0088 23.4 7.5 28 582-609 120-147 (211)
334 2fe3_A Peroxide operon regulat 26.8 1.3E+02 0.0044 23.7 5.9 16 151-166 35-50 (145)
335 3b7b_A Euchromatic histone-lys 26.7 2.9E+02 0.0099 23.3 9.1 16 320-335 217-232 (237)
336 2ijq_A Hypothetical protein; s 25.9 2.1E+02 0.0073 23.1 6.8 48 526-573 45-103 (161)
337 4fke_A Aminopeptidase N; zinc 25.2 5.5E+02 0.019 27.8 12.2 160 176-335 690-856 (909)
338 2fe3_A Peroxide operon regulat 25.1 1.7E+02 0.006 22.9 6.4 60 467-528 12-71 (145)
339 1oyz_A Hypothetical protein YI 25.1 3.5E+02 0.012 23.7 23.3 23 553-576 243-265 (280)
340 2o03_A Probable zinc uptake re 24.9 1E+02 0.0034 23.8 4.8 45 41-85 15-59 (131)
341 3eiq_C Programmed cell death p 24.9 4.3E+02 0.015 24.7 20.1 66 314-379 221-291 (358)
342 1bpo_A Protein (clathrin); cla 24.4 5E+02 0.017 25.3 11.7 35 403-437 353-387 (494)
343 4ets_A Ferric uptake regulatio 24.3 1.8E+02 0.0062 23.4 6.4 69 53-122 14-85 (162)
344 2etb_A Transient receptor pote 24.2 2.4E+02 0.0082 24.4 8.0 91 43-134 6-115 (256)
345 3mwm_A ZUR, putative metal upt 23.6 95 0.0033 24.3 4.5 42 41-82 18-59 (139)
346 2crb_A Nuclear receptor bindin 23.6 84 0.0029 22.4 3.4 27 579-605 15-41 (97)
347 3e3v_A Regulatory protein RECX 22.5 3.2E+02 0.011 22.4 8.9 24 516-539 139-163 (177)
348 3kae_A CDC27, possible protein 22.2 3.2E+02 0.011 22.3 15.4 176 422-610 44-239 (242)
349 3ygs_P Procaspase 9; apoptosis 22.2 1.1E+02 0.0038 22.1 4.2 37 425-461 51-87 (97)
350 2xig_A Ferric uptake regulatio 21.9 2.5E+02 0.0085 22.2 6.7 60 467-528 17-76 (150)
351 2xig_A Ferric uptake regulatio 21.7 1.7E+02 0.0059 23.1 5.7 34 188-223 42-75 (150)
352 4gq2_M Nucleoporin NUP120; bet 21.4 6.4E+02 0.022 27.5 11.9 128 315-456 815-950 (950)
353 3us6_A Histidine-containing ph 21.2 3.1E+02 0.011 21.8 7.5 22 247-268 100-121 (153)
354 3ctd_A Putative ATPase, AAA fa 21.1 3.8E+02 0.013 22.7 8.5 65 242-306 34-106 (213)
355 3eiq_C Programmed cell death p 21.0 5.1E+02 0.018 24.2 14.3 27 213-239 58-84 (358)
356 1bd8_A P19INK4D CDK4/6 inhibit 20.9 2E+02 0.0068 22.3 6.2 14 221-234 110-123 (156)
357 3bu8_A Telomeric repeat-bindin 20.6 79 0.0027 26.8 3.3 47 493-539 88-140 (235)
358 4ets_A Ferric uptake regulatio 20.4 1.4E+02 0.0049 24.0 5.0 59 163-224 24-84 (162)
359 2fu4_A Ferric uptake regulatio 20.1 2.1E+02 0.0073 19.4 7.0 60 265-325 7-67 (83)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-40 Score=353.04 Aligned_cols=483 Identities=10% Similarity=-0.027 Sum_probs=403.8
Q ss_pred hhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHH
Q 006627 115 MYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAI 194 (638)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 194 (638)
.+.+.|.+..+...+..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345667778888888888888899999999999999999999999999985 578989999999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCC-------------------cccHHHHHHHHHhCCC
Q 006627 195 HACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNS-------------------VVSWTVMISGYIRCNE 255 (638)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~g~ 255 (638)
++.+... + +++.++..++.+|.+.|++++|.++|+++...+ ..+|+.++.+|.+.|+
T Consensus 140 ~~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 140 LTKEDLY--N--RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHTCGG--G--TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc--c--cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 9977543 2 278899999999999999999999999655433 6789999999999999
Q ss_pred hHHHHHHHHHHHHcCccCC-hHhHHHHHHHhcccCChhhH--HHH-HHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHH
Q 006627 256 INEGVRLFAEMIEENVFPS-EITILSLIIECGFVGGLQLG--KWL-HAYILRNGFEFSLAMANALVDMYGKCREIRSART 331 (638)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (638)
+++|.++|++|.+.+ |+ ...+..+...+...+..+.. ..+ +..+...+..+...+++.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998864 44 34455555444433332221 111 4444445555566677778889999999999999
Q ss_pred HHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 006627 332 LFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEV 409 (638)
Q Consensus 332 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (638)
+|+++.+ ++..+|+.++..|.+.|++++|+++|+++...+ +.+..++..++.++.+.|++++|..+++.+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 9999987 788999999999999999999999999998765 4477889999999999999999999999999765 67
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627 410 DVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA 486 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 486 (638)
+..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 88999999999999999999999999875 3467899999999999999999999999999874 5577899999999
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HhhHHHHHHHHhh
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-------PLRPN--MIVWGALLAASKL 557 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~ 557 (638)
|.+.|++++|.++|+++.+. .+.+..+|..++.++.+.|++++|.++|+++ +..|+ ..+|..++.+|..
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999873 4557889999999999999999999999988 34676 7899999999999
Q ss_pred cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.|++++|...++++++++|+++.+|..++.+|.+.|++++|.++++++.+..+
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999987654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-39 Score=344.77 Aligned_cols=495 Identities=9% Similarity=-0.044 Sum_probs=334.1
Q ss_pred hhhhcCChhHHHHhhhhh-----hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHH
Q 006627 19 HIIKTHFKFSYTNIINPL-----TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEI 93 (638)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 93 (638)
.+.+.|.+..+...|..+ ..|+.++..+.+.|++++|+.+|++|.+. .|+..++..++.+|...|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345567777777777766 77999999999999999999999999854 57778899999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCC-------------------CcchHHHHHHHHHhCCCch
Q 006627 94 HGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNR-------------------DVVSWSTMIRGYHRGGLPE 154 (638)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~ 154 (638)
++.+... ++++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987644 688999999999999999999999999964432 3678999999999999999
Q ss_pred HHHHHHHHhHHCCCcCC-HhhHHHHHHHhcccCchHHH--HHH-HHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006627 155 EALEVMREMRFMDIRPS-EVAMISMVSLFADVADVDLG--KAI-HACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQ 230 (638)
Q Consensus 155 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 230 (638)
+|+++|++|.+. .|+ ...+..+...+...+..+.+ ..+ +..+...+... ...++..++..|.+.|++++|.+
T Consensus 218 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 218 RAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF--LRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH--HHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH--HHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999875 344 33444444433333222211 111 22222222222 33344444555555666666666
Q ss_pred HHhccCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 006627 231 LFNRLNQ--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEF 308 (638)
Q Consensus 231 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (638)
+|+++.+ ++..+|+.++..+.+.|++++|.++|+++.+.+ +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------~~ 337 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------------------------------------PY 337 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TT
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC------------------------------------cc
Confidence 6665554 455555555555555555555555555554432 11
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE 388 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (638)
+..+++.++.++.+.|++++|..+++++.... +.+..++..+...|.+
T Consensus 338 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 338 -------------------------------NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC 385 (597)
T ss_dssp -------------------------------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred -------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 22334444444445555555555555544321 2334455555555555
Q ss_pred cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHH
Q 006627 389 AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFF 465 (638)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 465 (638)
.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555555443 3445556666666666666666666665543 235667777778888888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 006627 466 VDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM- 539 (638)
Q Consensus 466 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~- 539 (638)
+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888764 5567888888888999999999999988887632 55676 678899999999999999999999887
Q ss_pred CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 540 PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 540 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
...| +..+|..+...|...|++++|...++++++++|+++..+..++.+|..
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 3344 788999999999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-26 Score=232.51 Aligned_cols=371 Identities=11% Similarity=0.028 Sum_probs=270.0
Q ss_pred HHHHhcCChHHHHHHHhccCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhh
Q 006627 217 DMYSKCGNLAYAKQLFNRLNQ--N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQL 293 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 293 (638)
..+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 334455555555555554432 2 22334444555555666666666665555432 2344556666666666666666
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006627 294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS--K-DVMIWNAVISAYAQAHCIDKAFELFIHMKVS 370 (638)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 370 (638)
|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|.+.|+++...
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666666655543 23344566666677777777777777666542 2 3445666777777788888888888887764
Q ss_pred CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHH
Q 006627 371 KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNA 447 (638)
Q Consensus 371 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 447 (638)
. +.+..++..+...+...|+++.|...++++.+.+ +.+...+..+...+...|++++|...+++.. ..+..++..
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 2 2345677777788888888888888888888765 5566778888888888888888888887655 335678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG 527 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (638)
+..++...|++++|+..++++.+.+ +.+..++..+..++.+.|++++|.+.++++.+ ..+.+...+..++.++.+.|
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcC
Confidence 8888999999999999999988864 44567888899999999999999999999987 34567788889999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627 528 LLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR 594 (638)
Q Consensus 528 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 594 (638)
++++|.+.++++ ...| +..++..+...+...|++++|...++++++++|+++.++..++.++...|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999887 4445 477888899999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.1e-26 Score=227.00 Aligned_cols=355 Identities=11% Similarity=0.054 Sum_probs=308.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcC
Q 006627 246 MISGYIRCNEINEGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCR 324 (638)
Q Consensus 246 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (638)
+...+.+.|++++|.+.+..+.+. .|+. ..+..+...+...|+.+.+...++...+.. +.+...+..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677899999999999998875 4554 455566667788999999999999888764 667889999999999999
Q ss_pred ChHHHHHHHhcCC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHhccCchHHHHHHHH
Q 006627 325 EIRSARTLFDGMK--SK-DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCTEAGALEMGKWLHT 400 (638)
Q Consensus 325 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 400 (638)
++++|...|+++. .| +...|..+..++...|++++|.+.|+++... .|+.. .+..+...+...|++++|...++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999875 33 4567999999999999999999999998875 45544 55667778888999999999999
Q ss_pred HHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006627 401 YIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG 477 (638)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 477 (638)
.+.+.. +.+..++..+...+...|++++|...|+++. ..+...|..+...+...|++++|+..+++..+.. +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 999876 6677899999999999999999999999876 3356788889999999999999999999998864 4457
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P-LRPNMIVWGALLAAS 555 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 555 (638)
.++..+..++...|++++|.+.++++.+ ..+.+...+..++.++.+.|++++|.+.++++ . .+++..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8899999999999999999999999987 33445678999999999999999999999998 3 345688999999999
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999997643
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5e-27 Score=238.13 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=137.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc---------hHHHHHHHHHHHHhCCCCcccH
Q 006627 343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA---------LEMGKWLHTYIEKQGLEVDVIL 413 (638)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 413 (638)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566677777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006627 414 KTALVDMYAKCGDVNGAYRLFSEAI----YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH 489 (638)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 489 (638)
|++|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 7777777777777777777777665 567777777777777777777777777888777788888888888888888
Q ss_pred cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
.|++++|.+++++|.+. +..|+..+|+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 88888888888887775 777887777777777654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.8e-27 Score=237.68 Aligned_cols=211 Identities=15% Similarity=0.114 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 006627 258 EGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGM 336 (638)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 336 (638)
.+..+.+.+.+++..+.+ ..++.+|.+|++.|++++|.++|++|.+.|++||..+|+.|+.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344455566666555443 346677777777777777777777777777777777777777777766543221
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH
Q 006627 337 KSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA 416 (638)
Q Consensus 337 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (638)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 22345688889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAI----YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA 490 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 490 (638)
++.+|++.|++++|.++|++|. .||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||..++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999998876 6788999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.3e-24 Score=220.59 Aligned_cols=440 Identities=9% Similarity=-0.040 Sum_probs=262.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006627 138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID 217 (638)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (638)
..+......+.+.|++++|+..|+++... .|+...+..+..++...|+++.|...+..+.+..+. +..++..+..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHHHHHHH
Confidence 34556667777888888888888888774 367777777777777777777777777777766544 5667777777
Q ss_pred HHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhH
Q 006627 218 MYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLG 294 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 294 (638)
++...|++++|...|+.+.. ++......++..+........+.+.+..+...+..|+...+..-.......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------ 155 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc------
Confidence 77777777777777766543 222333334443333333333333333332222222221111100000000
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHHHHHHHHh---cCCHHHHHHHHHHHHH-
Q 006627 295 KWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMIWNAVISAYAQ---AHCIDKAFELFIHMKV- 369 (638)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~- 369 (638)
...|+...... +.......... ..+..+ +...+......+.. .|++++|+..++++..
T Consensus 156 ----------~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 156 ----------ENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp -----------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred ----------cCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 00111111110 11000000000 001111 12233333333443 6777777777777665
Q ss_pred ----cCcCC--------ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006627 370 ----SKVRP--------NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA 437 (638)
Q Consensus 370 ----~g~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (638)
....| +...+..+...+...|+++.|...++.+.+... . ...+..+...+...|++++|...++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-R-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-c-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 21111 234555666677777778888777777777652 2 666777777777778888877777765
Q ss_pred CC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh
Q 006627 438 IY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE 514 (638)
Q Consensus 438 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 514 (638)
.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+..
T Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 373 (514)
T 2gw1_A 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPE 373 (514)
T ss_dssp HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSH
T ss_pred hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHH
Confidence 52 255677777777778888888888888877653 334567777777788888888888888877763 333456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HhhHHHHHHHHhh---cCChHHHHHHHHHHhccCCCCcchHH
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM----PLRPN----MIVWGALLAASKL---HKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
.+..++.++.+.|++++|...++++ +..|+ ...+..+...+.. .|++++|...++++++.+|+++..+.
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 7777777888888888888887776 11222 3367777777777 78888888888888888888777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 584 LMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 584 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.++.+|...|++++|.+.+++..+..+
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 888888888888888888887765443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-23 Score=216.95 Aligned_cols=395 Identities=10% Similarity=0.004 Sum_probs=260.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc
Q 006627 210 AIATALIDMYSKCGNLAYAKQLFNRLNQ--NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGF 287 (638)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 287 (638)
..+......+.+.|++++|...|+++.. |+..+|..+..++.+.|++++|.+.++++.+.+ +.+...+..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3444555556666666666666665543 555556666666666666666666666665542 2233455556666666
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC----CCchhHHHHHHHHHhcCCHHHHHHH
Q 006627 288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS----KDVMIWNAVISAYAQAHCIDKAFEL 363 (638)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~ 363 (638)
.|+++.|...|+.+.+.+ +++......++..+........+.+.+..+.. ++...+..-...............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 666666666666665544 22333333333333322222222222211110 0000000000000000000011111
Q ss_pred HHHHHHcCc--------CCC-hhhHHHHHHHHh---ccCchHHHHHHHHHHHH-----hCC--------CCcccHHHHHH
Q 006627 364 FIHMKVSKV--------RPN-EVTMVGLLSLCT---EAGALEMGKWLHTYIEK-----QGL--------EVDVILKTALV 418 (638)
Q Consensus 364 ~~~m~~~g~--------~p~-~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~ 418 (638)
...+..... .|+ ...+......+. +.|+++.|...++.+.+ ..- +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111111111 122 233333333333 48999999999999988 311 33467788889
Q ss_pred HHHHhcCCHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 006627 419 DMYAKCGDVNGAYRLFSEAI--YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEG 496 (638)
Q Consensus 419 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 496 (638)
..+...|++++|...++++. .|+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999998876 3447788889999999999999999999999764 44667899999999999999999
Q ss_pred HHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627 497 KSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEI 574 (638)
Q Consensus 497 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 574 (638)
...++++.+ ..+.+...+..++.++...|++++|...++++ ...| +..++..+...+...|++++|...++++++.
T Consensus 324 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999987 34446778899999999999999999999988 3333 5678888999999999999999999999999
Q ss_pred CCCCcc------hHHHHHHHHHh---cCCHHHHHHHHHHHhhcC
Q 006627 575 EPQNYG------YNVLMSNIYAV---ANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 575 ~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 609 (638)
.|+++. .+..++.+|.. .|++++|.+.++++.+..
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 998866 99999999999 999999999999987654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.4e-22 Score=208.34 Aligned_cols=428 Identities=11% Similarity=-0.014 Sum_probs=204.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006627 138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALID 217 (638)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (638)
..|..+...+.+.|++++|++.|+++.... +.+...+..+..++...|+++.|...+..+.+..+. +..++..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 455666667777777777777777776642 234455566666666666666666666666665543 5677777778
Q ss_pred HHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc------CccCChHhHHHHHHHhcccCCh
Q 006627 218 MYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEE------NVFPSEITILSLIIECGFVGGL 291 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~ 291 (638)
++...|++++|...|+.+. .+....+..+..+...+....|...++++... ...|+.......+. ..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcCh
Confidence 8888888888888776432 22222222334444455556777777776442 12233333322221 1111
Q ss_pred hhHHHHHHHHHHhcCCCc-hhhHHHHHHHHHh--------cCChHHHHHHHhcCCCCCc----------hhHHHHHHHHH
Q 006627 292 QLGKWLHAYILRNGFEFS-LAMANALVDMYGK--------CREIRSARTLFDGMKSKDV----------MIWNAVISAYA 352 (638)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~----------~~~~~li~~~~ 352 (638)
+.+...+.... ...+. ......+...+.. .|++++|..+++++.+.++ ..+..+...+.
T Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 11111100000 00000 0011222222211 1245555555555443211 12334444555
Q ss_pred hcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006627 353 QAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYR 432 (638)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 432 (638)
..|++++|...+++.... .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 555555555555555543 3344445555555555555555555555555543 3344555555555555555555555
Q ss_pred HHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCC
Q 006627 433 LFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGL 509 (638)
Q Consensus 433 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 509 (638)
.+++.. ..+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+....
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 555443 2234455555555555555555555555555442 223344555555555555555555555554432100
Q ss_pred CC----ChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 510 VP----KIEHYGCMVDLLGRA----------GLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 510 ~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
.+ ....+..+..++.+. |++++|...++++ ...| +..++..+...+...|++++|...++++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 01 111122333444444 5555555555544 2222 344444555555555555555555555555
Q ss_pred cCCCCcc
Q 006627 574 IEPQNYG 580 (638)
Q Consensus 574 ~~p~~~~ 580 (638)
+.|+++.
T Consensus 491 ~~~~~~~ 497 (537)
T 3fp2_A 491 LARTMDE 497 (537)
T ss_dssp HC--CHH
T ss_pred hCCCcHH
Confidence 5555433
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.4e-22 Score=202.65 Aligned_cols=346 Identities=10% Similarity=0.019 Sum_probs=242.4
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHH
Q 006627 239 SVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVD 318 (638)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (638)
+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34567778888888888888888888887652 2345566666666666677777776666666554 223444555555
Q ss_pred HHHhcCChHHHHHHHhcCCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627 319 MYGKCREIRSARTLFDGMKSKDV------MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392 (638)
Q Consensus 319 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (638)
.|...|++++|...|+++.+.++ ..+..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 55555555555555555433211 2222222221100 111223346677888
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006627 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDME 469 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 469 (638)
+.|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+..++...|++++|+..++++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888887765 5667778888888888888888888888765 3467788888888888889999999888888
Q ss_pred HcCCCCcHHHHHHH------------HHHHhccCcHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHHhcCChHHH
Q 006627 470 RSGVKPNGITFIGL------------LNACSHAGLVTEGKSVFDKMVHGLGLVPK-----IEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 470 ~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A 532 (638)
+.. +.+...+..+ ...|...|++++|..+++++.+. .|+ ...+..++.++.+.|++++|
T Consensus 239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 753 3334444444 78888999999999999999864 343 34788888999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHH------------HHHhcC-----
Q 006627 533 HEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSN------------IYAVAN----- 593 (638)
Q Consensus 533 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g----- 593 (638)
.+.++++ ...| +..+|..+..++...|++++|...++++++++|+++..+..++. .|...|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 9999987 4444 67889999999999999999999999999999999999999984 455556
Q ss_pred CHHHHHHHHHHH-hhcCCcCCC
Q 006627 594 RWNDVAGVRRVM-KEIRVKKEP 614 (638)
Q Consensus 594 ~~~~A~~~~~~~-~~~~~~~~~ 614 (638)
+.+++.+.++++ .+..+...|
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCC
Confidence 566778777763 444444333
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2e-21 Score=203.35 Aligned_cols=477 Identities=9% Similarity=-0.044 Sum_probs=312.4
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHhh
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQMY 116 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 116 (638)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 566778888889999999999999998764 4566788888888889999999999999988876 56778888888888
Q ss_pred hcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHH
Q 006627 117 SECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHA 196 (638)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 196 (638)
...|++++|...|+.+. .+....+..+..+...+....|...++.+.... |+..
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~----------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG----------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc-----------------------
Confidence 88888888888886432 222222223444445555567777777765421 1100
Q ss_pred HHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcc---cHHHHHHHHHh--------CCChHHHHHHHHH
Q 006627 197 CVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVV---SWTVMISGYIR--------CNEINEGVRLFAE 265 (638)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~~~~~~ 265 (638)
. ........+..+....+.+.+...+......+.. ....+...+.. .|++++|..++++
T Consensus 158 ------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 158 ------S----QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp -----------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------c----cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0 0001122333444555666666666555543332 22222222221 2467777777777
Q ss_pred HHHcCccCChH-hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC--CCCch
Q 006627 266 MIEENVFPSEI-TILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK--SKDVM 342 (638)
Q Consensus 266 m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~ 342 (638)
+.+. .|+.. .+..+ ..++..+...+...|++++|...|++.. .|+..
T Consensus 228 ~l~~--~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 277 (537)
T 3fp2_A 228 LLSA--NTVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277 (537)
T ss_dssp HHC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHH--CCCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence 7654 23321 11111 1123455566777788888888887765 34456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006627 343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYA 422 (638)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 422 (638)
.+..+...+...|++++|...++++.... +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+.
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77888889999999999999999988754 3456788888899999999999999999999876 667788999999999
Q ss_pred hcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----cHHHHHHHHHHHhcc----
Q 006627 423 KCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVK-P----NGITFIGLLNACSHA---- 490 (638)
Q Consensus 423 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~---- 490 (638)
..|++++|...++++. ..+...+..+...+...|++++|...++++.+.... + ....+.....++...
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999998876 346678999999999999999999999998865311 1 112244555677777
Q ss_pred ------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHH
Q 006627 491 ------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 491 ------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 563 (638)
|++++|...++++.+. .+.+...+..+..++.+.|++++|.+.++++ ...|+......... +..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------~~~ 506 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT-------FAE 506 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH-------HHH
T ss_pred chhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh-------HHH
Confidence 9999999999999873 3456788999999999999999999999988 44454333222111 222
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVAN 593 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 593 (638)
+....... ..+|.....+..+...|.+.|
T Consensus 507 ~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~ 535 (537)
T 3fp2_A 507 AAKIQKRL-RADPIISAKMELTLARYRAKG 535 (537)
T ss_dssp HHHHHHHH-HTC------------------
T ss_pred HHHHHHhc-cccHHHHHHHhhHHHHHhhcc
Confidence 33333332 455665555555555554443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.3e-21 Score=198.00 Aligned_cols=364 Identities=10% Similarity=-0.025 Sum_probs=255.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627 208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIE 284 (638)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 284 (638)
+...+..+...+.+.|++++|...|+.+.+ .+..+|..+..++...|++++|.+.|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 778899999999999999999999998764 456789999999999999999999999998864 3356788899999
Q ss_pred hcccCChhhHHHHHHHHHHhcCCCch---hhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 006627 285 CGFVGGLQLGKWLHAYILRNGFEFSL---AMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAF 361 (638)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 361 (638)
+...|+++.|...++.+.+.. +.+. ..+..+...+... .+..+...+...|++++|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998754 2233 4555554442211 1223344455566666666
Q ss_pred HHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC--C
Q 006627 362 ELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI--Y 439 (638)
Q Consensus 362 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~ 439 (638)
..|+++.... +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|+++. .
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665432 2344555566666666666666666666666543 4455666666666666666666666666554 2
Q ss_pred C-CchhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccCcHHHHHHHHH
Q 006627 440 R-DICMWNAM------------MAGYGMHGCGEEALIFFVDMERSGVKPN-----GITFIGLLNACSHAGLVTEGKSVFD 501 (638)
Q Consensus 440 ~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 501 (638)
| +...+..+ ...+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 22333333 67788888888888888888875 343 3467778888888899999999888
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHH------------HhhcC-----ChH
Q 006627 502 KMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAA------------SKLHK-----NPS 562 (638)
Q Consensus 502 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----~~~ 562 (638)
++.+. .+.+...+..++.++...|++++|.+.++++ ...|+ ...+..+..+ |...| +.+
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 88763 3446778888888888889999999988887 55664 4555555522 33334 567
Q ss_pred HHHHHHHH-HhccCCCCcc----------hHHHHHHHHHhcCCHHHH
Q 006627 563 MGEIAATQ-ILEIEPQNYG----------YNVLMSNIYAVANRWNDV 598 (638)
Q Consensus 563 ~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 598 (638)
++.+.+++ +++..|++.. .+..++.+|...+|.+++
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 88888987 7888887532 344555555555555443
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=1.1e-17 Score=179.44 Aligned_cols=534 Identities=11% Similarity=0.036 Sum_probs=370.6
Q ss_pred cchHhhhhHHHhhhhcCChhHHHHhhhhh------------------------------------------hcHHHHHHH
Q 006627 8 LNLEQTRQCHAHIIKTHFKFSYTNIINPL------------------------------------------TRYNSLVTS 45 (638)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------------------~~~~~ll~~ 45 (638)
+|.+++...|.++++.|.+.+..++-.+- ......|..
T Consensus 723 ~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~ 802 (1630)
T 1xi4_A 723 QDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEI 802 (1630)
T ss_pred CChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHH
Confidence 49999999999999999998888876553 111233444
Q ss_pred HHhCCCchhHHHHHHHHHHCCCCCC-----------cccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006627 46 YIKNNKPSSALNIYAFMRKNGSEVD-----------NFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQ 114 (638)
Q Consensus 46 ~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 114 (638)
|+..-++..+-.+...+..-++..| ......|+..+-++++.......++.....| ..++.++|+|..
T Consensus 803 yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalak 881 (1630)
T 1xi4_A 803 YVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAK 881 (1630)
T ss_pred HHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 4444444333333333332221111 1112333334444455555556677777777 778999999999
Q ss_pred hhhcCCChhHHHHHhccCC------------CCCcc----------hHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCH
Q 006627 115 MYSECGSLVSARYLFDEMP------------NRDVV----------SWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSE 172 (638)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~------------~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 172 (638)
.|..+++-. ++.+.+=. ++|+. .-..||....+++-+..-.+.+-+ +-|.
T Consensus 882 iyid~n~np--e~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~------r~d~ 953 (1630)
T 1xi4_A 882 IYIDSNNNP--ERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVR------RKDP 953 (1630)
T ss_pred HHhccCCCH--HHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHH------hcCH
Confidence 999876433 23332211 11211 112233333333333322111111 1244
Q ss_pred hhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC-CC-----cccHHHH
Q 006627 173 VAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-NS-----VVSWTVM 246 (638)
Q Consensus 173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~l 246 (638)
..|..++. .+-+--+.+.++......+...++.-....+..|...|.+.+|.++++++.- ++ ...-+.+
T Consensus 954 ~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 954 ELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 44544442 1112234555565555555555777778888999999999999999998873 22 2445667
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHH-HHhcCC
Q 006627 247 ISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDM-YGKCRE 325 (638)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 325 (638)
+.+..+. +..+..++....... . ...+...+...|.+++|..+|+... .+...+.. +...++
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~-d------~~eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~n 1091 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY-D------APDIANIAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGN 1091 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc-c------HHHHHHHHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhh
Confidence 7777776 556777766665421 1 3336677888999999999999852 11121222 337889
Q ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 006627 326 IRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ 405 (638)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (638)
+++|.++.+++. ++.+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+++...++.
T Consensus 1092 ldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1092 LDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999874 4678899999999999999999999653 46778888999999999999999999988876
Q ss_pred CCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627 406 GLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN 485 (638)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 485 (638)
. +++.+.+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~ 1229 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 1229 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHH
Confidence 5 44444556999999999999755554 3556677778999999999999999999984 37999999
Q ss_pred HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHH
Q 006627 486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 565 (638)
++.+.|++++|.+.+++.. +..+|..+..++...|++..|....... ..++..+..++..|...|.+++|+
T Consensus 1230 tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred HHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998873 4578888999999999999999987653 445667778999999999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhc--CCHHHHHHHHH
Q 006627 566 IAATQILEIEPQNYGYNVLMSNIYAVA--NRWNDVAGVRR 603 (638)
Q Consensus 566 ~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 603 (638)
.++++++.++|.+...+..|+.+|.+- ++.-++.++|.
T Consensus 1301 ~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1301 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998888887765 35555555544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.3e-19 Score=177.00 Aligned_cols=307 Identities=10% Similarity=-0.026 Sum_probs=151.7
Q ss_pred hHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHH
Q 006627 275 EITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAY 351 (638)
Q Consensus 275 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 351 (638)
...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455566666777777777777777776654 33456666677777777777777777766542 2445666666677
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCC----ChhhHHHH------------HHHHhccCchHHHHHHHHHHHHhCCCCcccHHH
Q 006627 352 AQAHCIDKAFELFIHMKVSKVRP----NEVTMVGL------------LSLCTEAGALEMGKWLHTYIEKQGLEVDVILKT 415 (638)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (638)
...|++++|...+++.... .| +...+..+ ...+...|+++.|...++.+.+.. +.+...+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 7777777777777766553 33 22222222 234445555555555555555443 33444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH---------
Q 006627 416 ALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGL--------- 483 (638)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--------- 483 (638)
.+...+...|++++|...++++. ..+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence 55555555555555555554433 1233444444455555555555555555544432 1122222111
Q ss_pred ---HHHHhccCcHHHHHHHHHHHhhhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 006627 484 ---LNACSHAGLVTEGKSVFDKMVHGLGLVPKI----EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA 554 (638)
Q Consensus 484 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 554 (638)
...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|.+.++++ ...| +..++..+...
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 233444444444444444444321 1111 11223334444444444444444443 1122 33444444444
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
+...|++++|...++++++++|+++..+..+..+
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4444444444444444444444444444444433
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=9.8e-19 Score=172.48 Aligned_cols=297 Identities=11% Similarity=0.039 Sum_probs=242.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHH
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSL 385 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (638)
++..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.... +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345567788889999999999999988753 356788888999999999999999999987753 3355678888889
Q ss_pred HhccCchHHHHHHHHHHHHhCCC---CcccHHHHH------------HHHHHhcCCHHHHHHHHHcCC---CCCchhHHH
Q 006627 386 CTEAGALEMGKWLHTYIEKQGLE---VDVILKTAL------------VDMYAKCGDVNGAYRLFSEAI---YRDICMWNA 447 (638)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 447 (638)
+...|+++.|...++.+.+.. + .+...+..+ ...+...|++++|...++++. ..+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999998764 3 345555544 578899999999999998866 346778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHH----------
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG---------- 517 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---------- 517 (638)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 556788999999999999999999999999863 222333332
Q ss_pred --HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 518 --CMVDLLGRAGLLDEAHEMIKSM-PLRPN-M----IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 518 --~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
.++..+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2366789999999999999887 33343 2 23455778888999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCC
Q 006627 590 AVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...|++++|.+.++++.+..+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999998876554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-18 Score=169.50 Aligned_cols=287 Identities=10% Similarity=-0.023 Sum_probs=201.1
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHH
Q 006627 307 EFSLAMANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLL 383 (638)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 383 (638)
+.+..++..+...+...|++++|..+|+++.+ .+...+..++..+...|++++|...++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44555666677777777777777777776542 244556666677777778888888777776642 23455666666
Q ss_pred HHHhccC-chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChH
Q 006627 384 SLCTEAG-ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGE 459 (638)
Q Consensus 384 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 459 (638)
..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...+++.. ..+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777877777777654 4556677777777777888888887777655 224556666777777888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC-------CCCChhHHHHHHHHHHhcCChHHH
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG-------LVPKIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 532 (638)
+|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888877653 44556777777788888888888888887765311 133356777778888888888888
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCHH
Q 006627 533 HEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY-AVANRWN 596 (638)
Q Consensus 533 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 596 (638)
.+.++++ ...| +...+..+...+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888776 2233 4667777777888888888888888888888888888888888877 4555544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.4e-18 Score=167.60 Aligned_cols=266 Identities=10% Similarity=-0.022 Sum_probs=231.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHH
Q 006627 339 KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALV 418 (638)
Q Consensus 339 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 418 (638)
.+...+..+...+...|++++|+++++++.... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366778888889999999999999999988763 3445566677788899999999999999999876 66788899999
Q ss_pred HHHHhcC-CHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627 419 DMYAKCG-DVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT 494 (638)
Q Consensus 419 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 494 (638)
..+...| ++++|...|++... .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998663 356789999999999999999999999999874 445577778999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHhhHHHHHHHHhhcCChHH
Q 006627 495 EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL----------RPNMIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~ 563 (638)
+|.+.++++.+ ..+.+...+..++..+...|++++|...++++ .. +....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999986 34556788999999999999999999999887 11 2346788999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 564 GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 564 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
|...++++++..|+++..+..++.+|...|++++|.++++++.+..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999776543
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.3e-15 Score=163.75 Aligned_cols=506 Identities=11% Similarity=0.017 Sum_probs=356.2
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc-CchHHHHHHHHHHHhCCCCChhHHHHHHHh
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL-MTHLGKEIHGFAIKNGLDGDAYVSNALIQM 115 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 115 (638)
..-..|+...-++++..--...++.-...| ..++.++++|.+.|...+ +++.... -|..--..++.-
T Consensus 840 ~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~-----------~n~~yd~~~vgk 907 (1630)
T 1xi4_A 840 FSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLR-----------ENPYYDSRVVGK 907 (1630)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhh-----------ccCcccHHHHHH
Confidence 345566666777777777888888888888 568889999999998654 4433221 111111223344
Q ss_pred hhcCCChhHHHHHhccCCC--------CCcchHHHHHHHHHhCCCch-----------HHHHHHHHhHHCC--CcCCHhh
Q 006627 116 YSECGSLVSARYLFDEMPN--------RDVVSWSTMIRGYHRGGLPE-----------EALEVMREMRFMD--IRPSEVA 174 (638)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~-----------~a~~~~~~m~~~~--~~p~~~t 174 (638)
||...|+--|.-.+++-.- ..-..|....+.+.+..+.+ -=.++.++-.... -.-++.-
T Consensus 908 yce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~Pee 987 (1630)
T 1xi4_A 908 YCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEE 987 (1630)
T ss_pred HHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHH
Confidence 4444444444444433110 01112223333333332221 1122333322211 1233444
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCC
Q 006627 175 MISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCN 254 (638)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 254 (638)
....+++|...|.+.++.++++...-.+.....+....+.++....+. +..+..+..+....-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 466788888999999999999998844321112455666677666666 5566666666655322 455778888999
Q ss_pred ChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHh
Q 006627 255 EINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFD 334 (638)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (638)
.+++|..+|++.. -.....+.++. ..+++++|.++.+.. -++.+|..+..++...|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999852 11122233322 677888888888754 457888999999999999999999997
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHH
Q 006627 335 GMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILK 414 (638)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (638)
+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.+..+|++.++++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 75 577888999999999999999999999876654 44434445888999999888644443 2 4555667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627 415 TALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT 494 (638)
Q Consensus 415 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 494 (638)
..+...|...|++++|..+|... ..|..+..++++.|++++|++.+++. .+..+|..+..+|...|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 78999999999999999999985 58999999999999999999999875 45588999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhh--cCChHHHHHHHHH
Q 006627 495 EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKL--HKNPSMGEIAATQ 570 (638)
Q Consensus 495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~--~~~~~~A~~~~~~ 570 (638)
.|......+ ..++..+..++..|.+.|.+++|+++++.. +..|. ...|..+...+.+ -++..++.+.|..
T Consensus 1268 LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 998876543 345667789999999999999999999877 55553 4555555555554 4577888888888
Q ss_pred HhccCC-----CCcchHHHHHHHHHhcCCHHHHHH
Q 006627 571 ILEIEP-----QNYGYNVLMSNIYAVANRWNDVAG 600 (638)
Q Consensus 571 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 600 (638)
-..+.| +++..|..++.+|.+.|+|+.|..
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 888777 788899999999999999999984
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.8e-18 Score=169.98 Aligned_cols=281 Identities=9% Similarity=-0.086 Sum_probs=223.1
Q ss_pred HHhcCChHHHHH-HHhcCCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627 320 YGKCREIRSART-LFDGMKSK-------DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA 391 (638)
Q Consensus 320 ~~~~~~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (638)
+...|++++|.. .+++.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 77765421 34567788889999999999999999988763 4456677888888999999
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHH---------------HHHHHH
Q 006627 392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNA---------------MMAGYG 453 (638)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~---------------l~~~~~ 453 (638)
++.|...++.+.+.. +.+..++..+...|...|++++|.+.++++... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998876 667888888999999999999999999876522 2222221 133344
Q ss_pred hcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH
Q 006627 454 MHGCGEEALIFFVDMERSGVKP--NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE 531 (638)
Q Consensus 454 ~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 531 (638)
..|++++|...++++.+.. +. +..++..+...+...|++++|...++++.+. .+.+...+..++.++...|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999874 22 4788999999999999999999999999873 34457889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCCHHHH
Q 006627 532 AHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN-----------YGYNVLMSNIYAVANRWNDV 598 (638)
Q Consensus 532 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 598 (638)
|.+.++++ ...| +..++..+...+...|++++|...+++++++.|++ +..|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999988 3344 57889999999999999999999999999999987 78999999999999999999
Q ss_pred HHHHHHH
Q 006627 599 AGVRRVM 605 (638)
Q Consensus 599 ~~~~~~~ 605 (638)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9987744
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=5.3e-16 Score=161.33 Aligned_cols=213 Identities=8% Similarity=-0.051 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-------cCCHH-------HHHHHHHcCCC---C-CchhHHHHHHHHHh
Q 006627 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAK-------CGDVN-------GAYRLFSEAIY---R-DICMWNAMMAGYGM 454 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 454 (638)
..+..++++..... +.+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+..
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36777888888764 6678888888888875 79987 89999998763 3 56788999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCc-H-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HHhcCChHH
Q 006627 455 HGCGEEALIFFVDMERSGVKPN-G-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL-LGRAGLLDE 531 (638)
Q Consensus 455 ~~~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 531 (638)
.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+. .+.+...+...+.. +...|+.++
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence 99999999999999985 554 3 47888888888999999999999999863 22233333332222 346899999
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc----hHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 532 AHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG----YNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 532 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
|..+|++. ...| ++..|..++......|+.+.|..+++++++..|.++. .|..++......|+.+.+..+++++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3345 5788999999999999999999999999998877665 7778888889999999999999988
Q ss_pred hhcCC
Q 006627 606 KEIRV 610 (638)
Q Consensus 606 ~~~~~ 610 (638)
.+.-+
T Consensus 490 ~~~~p 494 (530)
T 2ooe_A 490 FTAFR 494 (530)
T ss_dssp HHHTH
T ss_pred HHHCc
Confidence 76544
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=3e-16 Score=161.43 Aligned_cols=378 Identities=11% Similarity=-0.001 Sum_probs=273.8
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHhccCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCccCChHhH
Q 006627 208 GVAIATALIDMYSK----CGNLAYAKQLFNRLNQ-NSVVSWTVMISGYIR----CNEINEGVRLFAEMIEENVFPSEITI 278 (638)
Q Consensus 208 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (638)
++.....+...|.. .++++.|...|+...+ .+...+..+...|.. .+++++|.+.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555555566655 6677777777765543 344556666666666 677777777777776654 44455
Q ss_pred HHHHHHhcc----cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHh----cCChHHHHHHHhcCCC-CCchhHHHHHH
Q 006627 279 LSLIIECGF----VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGK----CREIRSARTLFDGMKS-KDVMIWNAVIS 349 (638)
Q Consensus 279 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~ 349 (638)
..+-..+.. .++.+.|...|+...+.| +...+..+...|.. .+++++|...|++..+ .++..+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555 567777777777776665 44556666667766 6788888888877653 35667777777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627 350 AYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVILKTALVDMY 421 (638)
Q Consensus 350 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (638)
.|.. .+++++|.+.|++..+.| +...+..+...+.. .++.+.|..+++...+.+ +...+..+...|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7777 788999999998887754 44556666666654 788999999998888754 345666777777
Q ss_pred Hh----cCCHHHHHHHHHcCCC-CCchhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 006627 422 AK----CGDVNGAYRLFSEAIY-RDICMWNAMMAGYGMH-----GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG 491 (638)
Q Consensus 422 ~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 491 (638)
.. .+++++|..+|++... .+...+..+...|... +++++|+..+++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 8899999999988664 3667777888888877 89999999999998875 3455666777776655
Q ss_pred ---cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCC
Q 006627 492 ---LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKN 560 (638)
Q Consensus 492 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 560 (638)
++++|.++|++..+. .++..+..+...|.. .+++++|.+++++.-...++..+..+...|.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 889999999999873 456788888888888 89999999999988323467788888888887 789
Q ss_pred hHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCHHH--HHHHHHH
Q 006627 561 PSMGEIAATQILEIEPQ---NYGYNVLMSNIYAVANRWND--VAGVRRV 604 (638)
Q Consensus 561 ~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~--A~~~~~~ 604 (638)
+++|...++++.+.+|+ ++.....++.++....+..+ |.+++++
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 99999999999999854 77777778777664332222 4444444
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=5.3e-18 Score=167.74 Aligned_cols=260 Identities=8% Similarity=-0.089 Sum_probs=215.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627 340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVD 419 (638)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (638)
+...+..+...+.+.|++++|+..|+++.... +.+...+..+...+...|+++.|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888889999999999999999987753 4466788888889999999999999999998876 667888999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCC-------------chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHH
Q 006627 420 MYAKCGDVNGAYRLFSEAIYRD-------------ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP--NGITFIGLL 484 (638)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~ 484 (638)
+|...|++++|...++++...+ ...+..+...+...|++++|+..++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 9999999999999998876321 1233345788899999999999999999874 33 578899999
Q ss_pred HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChH
Q 006627 485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 562 (638)
..+...|++++|.+.++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +..++..+...+...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999873 4556788999999999999999999999988 4445 4788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 006627 563 MGEIAATQILEIEPQ------------NYGYNVLMSNIYAVANRWNDVAGVRRV 604 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (638)
+|...+++++++.|+ +...+..++.++...|+.+.|.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999887 367899999999999999999988774
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.8e-17 Score=161.16 Aligned_cols=259 Identities=8% Similarity=-0.074 Sum_probs=192.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006627 343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYA 422 (638)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 422 (638)
.+..+...+...|++++|..+|+++.... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555666666666666666655432 2244455555566666666666666666666654 445556666666666
Q ss_pred hcCCHHHHHHHHHcCCCC---CchhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627 423 KCGDVNGAYRLFSEAIYR---DICMWNAM--------------MA-GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL 484 (638)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 484 (638)
..|++++|.+.++++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 666666666666654421 22222222 22 3667789999999999999875 55778899999
Q ss_pred HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChH
Q 006627 485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 562 (638)
..+...|++++|.+.++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +..++..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999873 3456788899999999999999999999987 3344 5788899999999999999
Q ss_pred HHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 563 MGEIAATQILEIEPQ------------NYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
+|...++++++..|+ ++..+..++.+|...|++++|..++++..
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999 78899999999999999999999987554
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=2.5e-15 Score=154.54 Aligned_cols=352 Identities=13% Similarity=0.005 Sum_probs=290.8
Q ss_pred CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc----cCChhhHHHHHHHHHHhcCCCc
Q 006627 238 NSVVSWTVMISGYIR----CNEINEGVRLFAEMIEENVFPSEITILSLIIECGF----VGGLQLGKWLHAYILRNGFEFS 309 (638)
Q Consensus 238 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 309 (638)
.+...+..+...|.. .+++++|...|++..+.| +...+..+-..+.. .++.+.|...|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 456667777777877 899999999999998864 55667777777777 899999999999998876 5
Q ss_pred hhhHHHHHHHHHh----cCChHHHHHHHhcCCCC-CchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627 310 LAMANALVDMYGK----CREIRSARTLFDGMKSK-DVMIWNAVISAYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMV 380 (638)
Q Consensus 310 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 380 (638)
...+..|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888 88999999999987644 56678888888887 789999999999988765 566777
Q ss_pred HHHHHHhc----cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----cCCHHHHHHHHHcCCC-CCchhHHHHHHH
Q 006627 381 GLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK----CGDVNGAYRLFSEAIY-RDICMWNAMMAG 451 (638)
Q Consensus 381 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~ 451 (638)
.+-..+.. .++.+.|...++...+.+ +...+..+...|.. .+++++|..+|++... .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 899999999999998865 45667778888876 8899999999998664 466777778888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-----CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627 452 YGM----HGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA-----GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL 522 (638)
Q Consensus 452 ~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (638)
+.. .+++++|+..|++..+.| +...+..+...|... +++++|...+++..+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998765 345666777777766 8999999999999873 3 45677778888
Q ss_pred HHhcC---ChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----
Q 006627 523 LGRAG---LLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV---- 591 (638)
Q Consensus 523 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 591 (638)
|...| +.++|.+++++.-...++..+..+...+.. .+++++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87766 889999999988333578888889999988 799999999999999864 57899999999999
Q ss_pred cCCHHHHHHHHHHHhhcCC
Q 006627 592 ANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 592 ~g~~~~A~~~~~~~~~~~~ 610 (638)
.+++++|...|++..+.++
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 9999999999999987764
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.3e-16 Score=149.37 Aligned_cols=272 Identities=8% Similarity=-0.047 Sum_probs=216.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627 317 VDMYGKCREIRSARTLFDGMKSKDV----MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392 (638)
Q Consensus 317 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (638)
++.....|+++.|+..++.....++ .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445668999999999988765443 2345577899999999999987654 2356777888888899999999
Q ss_pred HHHHHHHHHHHHhCC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006627 393 EMGKWLHTYIEKQGL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERS 471 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 471 (638)
+.|.+.++.+...+. |.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 999999999988764 44566777788999999999999999998 567889999999999999999999999999987
Q ss_pred CCCCcHHHH---HHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHh
Q 006627 472 GVKPNGITF---IGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMI 546 (638)
Q Consensus 472 ~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 546 (638)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| ++.
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 553211 22334445669999999999999984 5667889999999999999999999999997 4455 578
Q ss_pred hHHHHHHHHhhcCChHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627 547 VWGALLAASKLHKNPSM-GEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
++..++..+...|+.++ +...++++++++|+++.+.. ...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 89999999999999875 67899999999999876554 345555555554433
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.9e-17 Score=158.36 Aligned_cols=347 Identities=11% Similarity=0.028 Sum_probs=149.4
Q ss_pred hcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHH
Q 006627 221 KCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAY 300 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 300 (638)
+.|++++|.++++++..|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|+++++..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888885553 788888888888888888888854 25777888888888888888888887776
Q ss_pred HHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHH
Q 006627 301 ILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMV 380 (638)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 380 (638)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 34467778888888888888888877753 56668888888888888888888888865 3678
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHH
Q 006627 381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEE 460 (638)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 460 (638)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888888888888888888877 367788888888888888888876666544 444445567888888899999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC------ChhHHHHHHHHHHhcCChHHHHH
Q 006627 461 ALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP------KIEHYGCMVDLLGRAGLLDEAHE 534 (638)
Q Consensus 461 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 534 (638)
|+.+++...... +.-...|+-+.-+|++- ++++..+.++...++..++| +...|..++..|...++++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 998888877543 33345566665555543 23333333333333334555 45778889999999999999888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627 535 MIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 535 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
.+-+-+ |+..-...+.....+-.+.+--.+...-.++..|. ....|..++...=|...+.+.++
T Consensus 304 tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 304 TMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHHHHHHHH
Confidence 765542 22222222233334444444444444444433332 34444444444444444444444
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.7e-16 Score=153.04 Aligned_cols=283 Identities=13% Similarity=0.058 Sum_probs=87.3
Q ss_pred cCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHH
Q 006627 118 ECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHAC 197 (638)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 197 (638)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566666666665433 3566666666666666666666643 23444555555555555666555555544
Q ss_pred HHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHh
Q 006627 198 VVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEIT 277 (638)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 277 (638)
..+. .+ ++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 87 ark~--~~--~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--AR--ESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--Cc--cchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 4442 11 345556666666666666666665542 55556666666666666666666666654 24
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 006627 278 ILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCI 357 (638)
Q Consensus 278 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 357 (638)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 555555555555555555555554 245555666666666666666655554433 2333334455666666666
Q ss_pred HHHHHHHHHHHHcCcCCChhhHHHHHHHHhc--cCchHHHHHHHHHHHHhCCCC------cccHHHHHHHHHHhcCCHHH
Q 006627 358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCTE--AGALEMGKWLHTYIEKQGLEV------DVILKTALVDMYAKCGDVNG 429 (638)
Q Consensus 358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 429 (638)
++|+.+++...... +.-...|+-+--++++ .++..+..+.|. .+.+++| +...|..+.-.|...++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 66666666544322 2222233333333332 222222222222 1112222 34455556666666666666
Q ss_pred HHHHH
Q 006627 430 AYRLF 434 (638)
Q Consensus 430 A~~~~ 434 (638)
|...+
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=4.8e-17 Score=161.01 Aligned_cols=278 Identities=13% Similarity=0.015 Sum_probs=205.1
Q ss_pred CChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHH-HHHHHHHcCc-CC--ChhhHHHHHHHHhccCchHHHHHHH
Q 006627 324 REIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFE-LFIHMKVSKV-RP--NEVTMVGLLSLCTEAGALEMGKWLH 399 (638)
Q Consensus 324 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (638)
+.++.+...|+.+...+.. ++...|++++|+. .+++...... .| +...+..+...+...|+++.|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555443322 3345688999998 8876543221 11 3456778888999999999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006627 400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN 476 (638)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 476 (638)
+.+.+.. +.+..++..+..++...|++++|...++++. ..+..++..+..++...|++++|...++++.+.. +.+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAY 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc
Confidence 9999876 6778899999999999999999999999766 3467889999999999999999999999999864 222
Q ss_pred HHHHHH---------------HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627 477 GITFIG---------------LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P 540 (638)
Q Consensus 477 ~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 540 (638)
...+.. .+..+...|++++|...++++.+.....++...+..++.++.+.|++++|...++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222221 233344899999999999999874222225788999999999999999999999987 3
Q ss_pred CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 541 LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 541 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
..| +..++..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|...++++.+..+
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344 5788999999999999999999999999999999999999999999999999999999999976544
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.1e-15 Score=156.86 Aligned_cols=216 Identities=8% Similarity=0.016 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHcCcCCChhhHHHHHHHHhc-------cCchH-------HHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006627 358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCTE-------AGALE-------MGKWLHTYIEKQGLEVDVILKTALVDMYAK 423 (638)
Q Consensus 358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (638)
+++..+|++.... .+-+...|......+.+ .|+++ .|..++++..+.-.|.+...+..++..+.+
T Consensus 255 ~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4777888887764 23456677766666654 68877 889999988863335568888999999999
Q ss_pred cCCHHHHHHHHHcCC--CC-Cc-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCcHHHHHH
Q 006627 424 CGDVNGAYRLFSEAI--YR-DI-CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA-CSHAGLVTEGKS 498 (638)
Q Consensus 424 ~~~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~ 498 (638)
.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|++++|..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 999999999999866 33 32 478888888889999999999999998752 2233344333333 335899999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P---LRPN--MIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
+|++..+. .+.+...|..++..+.+.|+.++|..+|+++ . ..|+ ...|...+......|+.+.+..+.+++.
T Consensus 413 ~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999874 3446788999999999999999999999988 2 2332 3478888888889999999999999999
Q ss_pred ccCCC
Q 006627 573 EIEPQ 577 (638)
Q Consensus 573 ~~~p~ 577 (638)
+..|+
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 99985
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.8e-16 Score=160.28 Aligned_cols=386 Identities=9% Similarity=-0.106 Sum_probs=190.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccCC-----------C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-----
Q 006627 208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQ-----------N-SVVSWTVMISGYIRCNEINEGVRLFAEMIEEN----- 270 (638)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----- 270 (638)
....|+.|...+...|++++|++.|++..+ + ...+|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345677777777777777777777665421 1 23456666677777777777777766654320
Q ss_pred -ccC-ChHhHHHHHHHhcc--cCChhhHHHHHHHHHHhcCCCchhhHHHHHHH---HHhcCChHHHHHHHhcCC---CCC
Q 006627 271 -VFP-SEITILSLIIECGF--VGGLQLGKWLHAYILRNGFEFSLAMANALVDM---YGKCREIRSARTLFDGMK---SKD 340 (638)
Q Consensus 271 -~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~ 340 (638)
..+ ...++.....++.. .+++++|...|+...+.. |-++..+..+... +...++.++|++.+++.. ..+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 011 12233333222222 234555555555555443 1122222222222 222344444444443322 112
Q ss_pred chhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHH
Q 006627 341 VMIWNAVISAYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTA 416 (638)
Q Consensus 341 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (638)
...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|+++.|...++...+.. |.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 2233333222222 233444444444443321 2223334444444444555555555555444433 233333333
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEG 496 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 496 (638)
+..+|...+....+.. ... ........+.++.|...+++..+.. +.+..++..+...+...|++++|
T Consensus 287 lg~~y~~~~~~~~~~~------~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLR------ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhHH------HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 3333322111000000 000 0000011234577888888888764 44456788889999999999999
Q ss_pred HHHHHHHhhhcCCCCCh--hHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 497 KSVFDKMVHGLGLVPKI--EHYGCMVD-LLGRAGLLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 497 ~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
.+.|+++.+. ...|.. ..+..+.. .+...|+.++|++.+++. .+.|+...... ....+..++++++
T Consensus 354 ~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHH
Confidence 9999998863 222221 12333333 235679999999999887 56666433322 2345677888899
Q ss_pred ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCCeeEE
Q 006627 573 EIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPGFSSV 619 (638)
Q Consensus 573 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 619 (638)
+.+|+++.++..||.+|...|++++|++.|++..+.+.......+||
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999999988776555555544
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=7.5e-17 Score=152.76 Aligned_cols=248 Identities=8% Similarity=-0.033 Sum_probs=203.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCCh--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKVRPNE--VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG 425 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (638)
++-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 4456678999999999887643 34443 3445677899999999999876654 2 3677888899999999999
Q ss_pred CHHHHHHHHHcCC----CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 006627 426 DVNGAYRLFSEAI----YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVF 500 (638)
Q Consensus 426 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 500 (638)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 556777788999999999999999987 567788999999999999999999999
Q ss_pred HHHhhhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 501 DKMVHGLGLVPKIEHY---GCMVDLLGRAGLLDEAHEMIKSM--PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 501 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.++..+..+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 3553211 22334455669999999999998 334578889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCHHH-HHHHHHHHhhcCC
Q 006627 576 PQNYGYNVLMSNIYAVANRWND-VAGVRRVMKEIRV 610 (638)
Q Consensus 576 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 610 (638)
|+++.++..++.++...|++++ +.++++++.+..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999986 5789998876554
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=8.1e-17 Score=159.19 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=197.4
Q ss_pred ChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHH
Q 006627 375 NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAG 451 (638)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 451 (638)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+++. ..+...+..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557788889999999999999999999886 6788899999999999999999999999876 3467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH-HH----------HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627 452 YGMHGCGEEALIFFVDMERSGVKPNG-IT----------FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV 520 (638)
Q Consensus 452 ~~~~~~~~~A~~~~~~m~~~~~~p~~-~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 520 (638)
+...|++++|+..++++.+. .|+. .. +..+...+...|++++|.++++++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999886 3432 22 23457788999999999999999997532222678899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 006627 521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV 598 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 598 (638)
.++.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 3344 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 006627 599 AGVRRVMKEIRV 610 (638)
Q Consensus 599 ~~~~~~~~~~~~ 610 (638)
...++++.+..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999976543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=4e-16 Score=151.53 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=91.8
Q ss_pred HHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 006627 421 YAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGK 497 (638)
Q Consensus 421 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 497 (638)
+...|++++|...++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 444455555555555443 2234455555666666666666666666666543 334556666666666666777777
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHhhHHHHHHHHhhcCChHH
Q 006627 498 SVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-------------NMIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~ 563 (638)
..++++.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 227 ~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 227 DAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 666666552 2334556666666666667777776666655 1122 24566666677777777777
Q ss_pred HHHHHHHHhccCCC
Q 006627 564 GEIAATQILEIEPQ 577 (638)
Q Consensus 564 A~~~~~~~~~~~p~ 577 (638)
|...++++++..|+
T Consensus 305 A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 305 VELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHhcch
Confidence 77777766655443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=7.7e-16 Score=139.24 Aligned_cols=196 Identities=14% Similarity=-0.012 Sum_probs=155.1
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627 408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL 484 (638)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 484 (638)
|++...+..+...+.+.|++++|...|++... .+...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56677788888888889999999988887653 356778888888999999999999999998874 44567888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHH
Q 006627 485 NACSHA-----------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALL 552 (638)
Q Consensus 485 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 552 (638)
.++... |++++|...+++..+. .+.+...+..+..++...|++++|+..++++ ....++..+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 899988 9999999999999863 3345678888999999999999999999987 2227788999999
Q ss_pred HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 553 AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
.++...|++++|+..++++++++|+++..+..++.++...|++++|+..+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998664
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.6e-14 Score=148.07 Aligned_cols=384 Identities=11% Similarity=-0.045 Sum_probs=233.1
Q ss_pred CCHhhHHHHHHHhcccCchHHHHHHHHHHHHhc-----cC-CCCchhHHHHHHHHHHhcCChHHHHHHHhccCC------
Q 006627 170 PSEVAMISMVSLFADVADVDLGKAIHACVVRNC-----KD-EKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ------ 237 (638)
Q Consensus 170 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 237 (638)
.....|+.+-..+...|+.++|...+....+.. .. .+....++..+...|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 334568888888899999999999998876641 11 111456788999999999999999998876642
Q ss_pred ----C-CcccHHHHHHHHHh--CCChHHHHHHHHHHHHcCccCChH-hHHHHHHH---hcccCChhhHHHHHHHHHHhcC
Q 006627 238 ----N-SVVSWTVMISGYIR--CNEINEGVRLFAEMIEENVFPSEI-TILSLIIE---CGFVGGLQLGKWLHAYILRNGF 306 (638)
Q Consensus 238 ----~-~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 306 (638)
+ ...++..+..++.. .+++++|.+.|++..+. .|+.. .+..+..+ +...++.+.|.+.++...+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 12345555555554 45799999999998875 45543 33333333 445677888999998888765
Q ss_pred CCchhhHHHHHHHHH----hcCChHHHHHHHhcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-hhh
Q 006627 307 EFSLAMANALVDMYG----KCREIRSARTLFDGMK---SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPN-EVT 378 (638)
Q Consensus 307 ~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~ 378 (638)
+.+..++..+...+. ..+++++|.+.+++.. ..+...+..+...|...|++++|+..+++..+. .|+ ...
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 334555555554444 3567888999998754 346677888999999999999999999998775 454 344
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhc
Q 006627 379 MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMH 455 (638)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 455 (638)
+..+...+...+... .... . ..........+.++.|...+++.. ..+...+..+...+...
T Consensus 284 ~~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 544444443211110 0000 0 001111112234566777776654 34667888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHH--HHHHHHH-HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627 456 GCGEEALIFFVDMERSGVKPNGI--TFIGLLN-ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 532 (638)
|++++|+..|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+........ ..+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHH
Confidence 99999999999998865333321 2333332 23578999999999999875 455543322222 233
Q ss_pred HHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHH
Q 006627 533 HEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 533 ~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
.+++++. .. +.++.+|..+...+...|++++|+..|++++++.|.+|.+...+|
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3444433 22 346788999999999999999999999999999999988877665
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.4e-15 Score=137.53 Aligned_cols=225 Identities=10% Similarity=-0.036 Sum_probs=149.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 006627 343 IWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYA 422 (638)
Q Consensus 343 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 422 (638)
.+..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...++.+.+.. +.+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~------------ 71 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REM------------ 71 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-ccc------------
Confidence 34445555555555555555555555443 444455555555555555555555555544321 000
Q ss_pred hcCCHHHHHHHHHcCCCCC----chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 006627 423 KCGDVNGAYRLFSEAIYRD----ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKS 498 (638)
Q Consensus 423 ~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 498 (638)
.++ ...+..+...+...|++++|...+++..+. .|+. ..+...|++++|..
T Consensus 72 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 72 ----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp ----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 000 345556666667777777777777777764 3443 23555677788888
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
.++++.. ..+.+...+..++..+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++++.+|
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 8888765 23334566777778888888888888888777 2233 567788888888888888889988888888888
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 577 QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 577 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+++..+..++.+|...|++++|.+.+++..+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 888888888999999999999988888876544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4e-15 Score=138.91 Aligned_cols=236 Identities=10% Similarity=-0.052 Sum_probs=176.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc--CCC----hhhHHH
Q 006627 310 LAMANALVDMYGKCREIRSARTLFDGMKS--KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKV--RPN----EVTMVG 381 (638)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 381 (638)
...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..+++...... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678899999999999999999987542 5678899999999999999999999999876421 112 355666
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 006627 382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEA 461 (638)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 461 (638)
+...+...|+++.|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 6667777777777777777776643 221 223444566677
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627 462 LIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P 540 (638)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 540 (638)
...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.++++ .
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777776642 223456777778888888888888888888763 3445677788888888888888888888877 3
Q ss_pred CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC------CCCcchHHHHHHH
Q 006627 541 LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIE------PQNYGYNVLMSNI 588 (638)
Q Consensus 541 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 588 (638)
..| +..++..+...+...|++++|...++++++++ |++..++..+..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 334 47788888889999999999999999999988 8877777776654
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.1e-14 Score=137.51 Aligned_cols=241 Identities=8% Similarity=-0.114 Sum_probs=184.9
Q ss_pred hcCCHHHHHHHHHHHHHcCcC---CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 006627 353 QAHCIDKAFELFIHMKVSKVR---PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNG 429 (638)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 429 (638)
..|++++|+..++++...... .+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346788888888887765321 134566677778888888888888888888775 5567788888888888999999
Q ss_pred HHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhh
Q 006627 430 AYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHG 506 (638)
Q Consensus 430 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 506 (638)
|...|++.. ..+...+..+..++...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 998888766 336778888899999999999999999999886 454444444555567779999999999888763
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 507 LGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 507 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
.+++...+ .++..+...++.++|.+.++++ ...|+ ...+..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 34444444 3677778888889999999887 33332 577888899999999999999999999999998754
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 006627 581 YNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 477899999999998877
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.5e-14 Score=136.20 Aligned_cols=247 Identities=11% Similarity=-0.000 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCh--hhHHHHHHHHh
Q 006627 313 ANALVDMYGKCREIRSARTLFDGMKS---KDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNE--VTMVGLLSLCT 387 (638)
Q Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 387 (638)
+......+...|++++|...|++..+ .+...+..+...+...|++++|+..+++....+..|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444555555555555555554431 13334555555555555555555555555442211111 12444444555
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627 388 EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVD 467 (638)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 467 (638)
..|+++.|...++...+.. +.+..++..+...|...|++++|...+++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------------------ 134 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ------------------------------ 134 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG------------------------------
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------------
Confidence 5555555555555555443 333444444444455555555554444443
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC----C
Q 006627 468 MERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL---LDEAHEMIKSM----P 540 (638)
Q Consensus 468 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~ 540 (638)
.+.. +.+...+..+...+...+++++|.+.++++.+. .+.+...+..+..++...|+ +++|...++++ .
T Consensus 135 -l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 135 -IRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp -CCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred -hhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 3321 222233333331222223555555555555431 12223344444444444444 44444444443 1
Q ss_pred CCCC------HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627 541 LRPN------MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR 594 (638)
Q Consensus 541 ~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 594 (638)
..|+ ..++..+...+...|++++|...++++++++|+++.++..++.+....+.
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 1122 24566677888888999999999999999999998888888777655443
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=2.2e-13 Score=137.81 Aligned_cols=370 Identities=10% Similarity=-0.007 Sum_probs=182.6
Q ss_pred HHHHHHHHhcCCh---HHHHHHHhccCCCCcccHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCccCChHhHHHHHHH
Q 006627 213 TALIDMYSKCGNL---AYAKQLFNRLNQNSVVSWTVMISGYIRCN-----EINEGVRLFAEMIEENVFPSEITILSLIIE 284 (638)
Q Consensus 213 ~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 284 (638)
..|...|...|+. ++|...|++..+.+...+..+...+...+ ++++|.+.|++..+.|... .+..+...
T Consensus 39 ~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~ 115 (452)
T 3e4b_A 39 VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAML 115 (452)
T ss_dssp GTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHH
Confidence 3344444455555 67777777666555556666666444444 5677777777777655322 33344444
Q ss_pred hcccCChhh---HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCC----hHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 006627 285 CGFVGGLQL---GKWLHAYILRNGFEFSLAMANALVDMYGKCRE----IRSARTLFDGMKSKDVMIWNAVISAYAQAHCI 357 (638)
Q Consensus 285 ~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 357 (638)
|...+..+. +.+.+......| ++.....+...|...+. .+.+..++......++.
T Consensus 116 y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--------------- 177 (452)
T 3e4b_A 116 YLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--------------- 177 (452)
T ss_dssp HHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---------------
T ss_pred HHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---------------
Confidence 443333222 222222222222 22233333334433332 22222233333333333
Q ss_pred HHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC---chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc----CCHHHH
Q 006627 358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG---ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC----GDVNGA 430 (638)
Q Consensus 358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A 430 (638)
.+..+-..+...| +.++|...++...+.| +++...+..|...|... +++++|
T Consensus 178 --------------------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 178 --------------------CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp --------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred --------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 4444444444455 5555555555555555 34444334445555433 566666
Q ss_pred HHHHHcCCCCCchhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-----cHHHHHHHHHH
Q 006627 431 YRLFSEAIYRDICMWNAMMAG-Y--GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG-----LVTEGKSVFDK 502 (638)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~ 502 (638)
..+|++....++..+..|... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|.+.|++
T Consensus 237 ~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 237 QALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 666666552345555555555 3 35678888888888888766 4555666666665 44 88999999888
Q ss_pred HhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhcc
Q 006627 503 MVHGLGLVPKIEHYGCMVDLLGR----AGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEI 574 (638)
Q Consensus 503 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 574 (638)
.. +-++.....|...|.. ..++++|..+|++.-..-++.....+...|.. .+|.++|...++++.+.
T Consensus 313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 75 3455667777777765 34889999999887333345566667766654 45899999999999987
Q ss_pred CCCCcchHHHHHHHH--HhcCCHHHHHHHHHHHhhcCC---cCCCCeeEEEECCEEEEEEeCCccC
Q 006627 575 EPQNYGYNVLMSNIY--AVANRWNDVAGVRRVMKEIRV---KKEPGFSSVEVNGLVHKFIRGGMVN 635 (638)
Q Consensus 575 ~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (638)
.+.. ....+..+. ...++..+|.+..++-.+... .......-|.-+..+....+++-||
T Consensus 388 g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (452)
T 3e4b_A 388 DTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEEDGEESLLEHHHHH 451 (452)
T ss_dssp CCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC----CCCBC-----------------
T ss_pred CCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccchHHHHHhcccC
Confidence 7654 334444443 344577778887776654322 2222344444445566666666555
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=9.3e-14 Score=130.80 Aligned_cols=226 Identities=7% Similarity=-0.039 Sum_probs=168.3
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCc----hhHHHHHHHHHhc
Q 006627 382 LLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY--RDI----CMWNAMMAGYGMH 455 (638)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~ 455 (638)
....+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++... ++. ..|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344555566666666666655543 34444666666666667777777666665443 222 2367778888888
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006627 456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEM 535 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 535 (638)
|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+ -.+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988864 44567899999999999999999999999986 3344567777777344455699999999
Q ss_pred HHhC-CCCC-CHhhHHHHHHHHhhcCC---hHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCCHHHHHHHH
Q 006627 536 IKSM-PLRP-NMIVWGALLAASKLHKN---PSMGEIAATQILEIE---PQN-----YGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 536 ~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
++++ ...| +...+..+...+...|+ +++|...++++++.. |+. ...+..++.+|...|++++|.+++
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988 4445 46777888888888888 889999999999875 442 257888999999999999999999
Q ss_pred HHHhhcCCc
Q 006627 603 RVMKEIRVK 611 (638)
Q Consensus 603 ~~~~~~~~~ 611 (638)
++..+..+.
T Consensus 245 ~~al~~~p~ 253 (272)
T 3u4t_A 245 KNILALDPT 253 (272)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCcc
Confidence 999776543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.3e-13 Score=128.23 Aligned_cols=198 Identities=11% Similarity=-0.085 Sum_probs=156.8
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627 411 VILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC 487 (638)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 487 (638)
...+..+...+...|++++|...++++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556666677777777777777777654 2355677777788888888888888888888764 44667788888888
Q ss_pred hccCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHH
Q 006627 488 SHAGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMG 564 (638)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A 564 (638)
...|++++|.++++++.+ .+..| +...+..++.++...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999988876 23445 4567778888888899999999988887 3334 577788888888999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999888899999999999999999999998876544
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=7.3e-16 Score=160.53 Aligned_cols=130 Identities=9% Similarity=0.087 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccC-------CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHH
Q 006627 208 GVAIATALIDMYSKCGNLAYAKQLFNRLN-------QNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILS 280 (638)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (638)
...+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997753 48999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCh-hhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 006627 281 LIIECGFVGGL-QLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMK 337 (638)
Q Consensus 281 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 337 (638)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999999985 7899999999999999999999999887776655555555544443
No 44
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=8.5e-16 Score=160.06 Aligned_cols=148 Identities=10% Similarity=0.099 Sum_probs=115.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHH
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMK-------SKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVG 381 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 381 (638)
-..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567888888888888888888886643 57889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCch-HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----CchhHHHHHHHHHhc
Q 006627 382 LLSLCTEAGAL-EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DICMWNAMMAGYGMH 455 (638)
Q Consensus 382 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~ 455 (638)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++......+ .+.+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 788999999999999999999999998777755444444443222211 133444455556554
Q ss_pred C
Q 006627 456 G 456 (638)
Q Consensus 456 ~ 456 (638)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=2.7e-14 Score=131.94 Aligned_cols=200 Identities=15% Similarity=0.082 Sum_probs=95.8
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHH
Q 006627 386 CTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEAL 462 (638)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 462 (638)
+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. ..+...+..+...+...|++++|.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 333334444444433333322 2233333334444444444444444443322 113334444445555555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 006627 463 IFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL 541 (638)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 541 (638)
..++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.++++ ..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555543 334455555555666666666666666665542 2234445555555566666666666665554 22
Q ss_pred CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 542 RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 542 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
.| +..++..+...+...|++++|...++++++++|+++..+..++.+.
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 22 3455555566666666666666666666666666655555554443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.6e-13 Score=125.00 Aligned_cols=198 Identities=12% Similarity=-0.031 Sum_probs=146.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627 410 DVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA 486 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 486 (638)
+...+..+...+...|++++|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455556666666666666666666544 2245566667777777777788888887777653 4456777778888
Q ss_pred Hhcc-CcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChH
Q 006627 487 CSHA-GLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 487 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 562 (638)
+... |++++|...++++.+ .+..|+ ...+..++.++...|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 233343 466777788888888888888888776 3334 4677778888888888888
Q ss_pred HHHHHHHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 563 MGEIAATQILEIEP-QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 563 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+|...++++++..| +++..+..++.++...|++++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888888888888 888888888888888888888888888876544
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=9.4e-14 Score=135.88 Aligned_cols=223 Identities=11% Similarity=0.026 Sum_probs=160.5
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC-HHHHHHHHHcCC---CCCchhHHHHHHHHHhcC
Q 006627 381 GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGD-VNGAYRLFSEAI---YRDICMWNAMMAGYGMHG 456 (638)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 456 (638)
.+...+...|++++|...++.+.+.. +.+...|..+..++...|+ +++|+..|+++. ..+...|..+..++...|
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Confidence 33344445555555555555555544 4455556666666666665 666666666655 224556777777777778
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh-cCChHHH---
Q 006627 457 CGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR-AGLLDEA--- 532 (638)
Q Consensus 457 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A--- 532 (638)
++++|+..++++++.. +-+...|..+..++...|++++|+..++++++. .+-+...|+.+..++.+ .|..++|
T Consensus 181 ~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 181 DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 8888888888888764 446678888888888888888888888888862 33456778888888888 5655777
Q ss_pred --HHHHHhC-CCCC-CHhhHHHHHHHHhhcC--ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---------CHHH
Q 006627 533 --HEMIKSM-PLRP-NMIVWGALLAASKLHK--NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN---------RWND 597 (638)
Q Consensus 533 --~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~ 597 (638)
++.++++ ...| +...|..+...+...| ++++|...++++ +.+|+++.++..++++|.+.| .+++
T Consensus 258 ~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 258 REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 4667666 4455 4678888888888877 689999999998 999999999999999999875 3589
Q ss_pred HHHHHHHH-hhc
Q 006627 598 VAGVRRVM-KEI 608 (638)
Q Consensus 598 A~~~~~~~-~~~ 608 (638)
|+++++++ .+.
T Consensus 337 A~~~~~~l~~~~ 348 (382)
T 2h6f_A 337 ALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 99999988 443
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=3e-14 Score=131.62 Aligned_cols=200 Identities=13% Similarity=0.049 Sum_probs=158.1
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006627 408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLL 484 (638)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 484 (638)
......+..+...+...|++++|...|+++.. .+...+..+...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34566777788889999999999999988763 356788889999999999999999999999874 45678899999
Q ss_pred HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChH
Q 006627 485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~ 562 (638)
..+...|++++|.++++++.+. .+.+...+..++.++.+.|++++|.+.++++ ... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999873 3456778889999999999999999999987 333 36788889999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 563 MGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+|...++++++..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 999999999999999999999999999999999999999999976544
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=2.6e-13 Score=137.24 Aligned_cols=345 Identities=10% Similarity=-0.023 Sum_probs=227.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCCh---hhHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 006627 245 VMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGL---QLGKWLHAYILRNGFEFSLAMANALVDMYG 321 (638)
Q Consensus 245 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (638)
.+...+.+.|++++|.++|++..+.|. ...+..+-..+...|+. ++|...|+...+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677888999999999999988763 33344444555566777 8899998888755 4455566666455
Q ss_pred hcC-----ChHHHHHHHhcCCCC-CchhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627 322 KCR-----EIRSARTLFDGMKSK-DVMIWNAVISAYAQAHCID---KAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392 (638)
Q Consensus 322 ~~~-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (638)
..+ ++++|...|++..++ +...+..|...|...+..+ ++.+.+......| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 544 778899999886644 5567788888887766544 3455555555444 344555566666666655
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC---CHHHHHHHHHcCCCC---CchhHHHHHHHHHhc----CChHHHH
Q 006627 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYAKCG---DVNGAYRLFSEAIYR---DICMWNAMMAGYGMH----GCGEEAL 462 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~ 462 (638)
+.+......+.+.-...++..+..|...|...| +.++|.+.|++.... +...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444444333333322344458888889999999 899999999876532 333346677777555 6899999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHH-H--hccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC-----ChHHHHH
Q 006627 463 IFFVDMERSGVKPNGITFIGLLNA-C--SHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG-----LLDEAHE 534 (638)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 534 (638)
..|++.. .| +...+..+... + ...+++++|.+.|++..+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999977 43 33445555554 3 4688999999999998874 4 5667777887776 55 9999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 006627 535 MIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDVAGVRRVMK 606 (638)
Q Consensus 535 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 606 (638)
+|++.- .-++..+..+...|.. ..|+++|...++++.+. .++.....|+.+|.. ..++++|...|++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999988 6677888888877766 34899999999999874 567889999999885 569999999999988
Q ss_pred hcCCc
Q 006627 607 EIRVK 611 (638)
Q Consensus 607 ~~~~~ 611 (638)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 77653
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=2.7e-13 Score=132.60 Aligned_cols=247 Identities=8% Similarity=-0.014 Sum_probs=199.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627 341 VMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA-LEMGKWLHTYIEKQGLEVDVILKTALVD 419 (638)
Q Consensus 341 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (638)
...|..+...+...|++++|+..+++..... +-+...|..+..++...|+ +++|...++++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467777788888899999999999887653 2345567777778888886 999999999998877 667888899999
Q ss_pred HHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCcHHH
Q 006627 420 MYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH-AGLVTE 495 (638)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 495 (638)
++...|++++|+..|+++. ..+...|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998877 3367788889999999999999999999999874 4466788888888888 566577
Q ss_pred H-----HHHHHHHhhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHhhHHHHHHHHhhcC--------
Q 006627 496 G-----KSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG--LLDEAHEMIKSMPLRP-NMIVWGALLAASKLHK-------- 559 (638)
Q Consensus 496 a-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~-------- 559 (638)
| ++.++++++. .+-+...|..+..++...| ++++|.+.+.++...| +...+..++..+...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 5888888762 3345678888888888888 6899999998885455 4677788888887764
Q ss_pred C-hHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 006627 560 N-PSMGEIAATQI-LEIEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 560 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 592 (638)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 999999999999988876543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=6.6e-13 Score=124.99 Aligned_cols=224 Identities=9% Similarity=-0.093 Sum_probs=118.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCcccHHH
Q 006627 340 DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE----AGALEMGKWLHTYIEKQGLEVDVILKT 415 (638)
Q Consensus 340 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (638)
++..+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555666666666666776666666552 233344445555555 566666666666655543 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--
Q 006627 416 ALVDMYAK----CGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH-- 489 (638)
Q Consensus 416 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 489 (638)
.+...|.. .+++ ++|+..+++..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~-------------------------------~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNT-------------------------------NKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCH-------------------------------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCH-------------------------------HHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 44444544 4444 45555554444432 33444444445544
Q ss_pred --cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cC
Q 006627 490 --AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HK 559 (638)
Q Consensus 490 --~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 559 (638)
.+++++|.+.+++..+. + +...+..+...+.. .+++++|.+++++.-...++..+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 55555555555555542 2 33344444555544 55555555555554111234445555555555 55
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHhhcC
Q 006627 560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAV----ANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 609 (638)
++++|...++++.+..| +..+..++.+|.. .+++++|.+.+++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666666666665544 4455566666666 666666666666555444
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.6e-13 Score=120.63 Aligned_cols=167 Identities=11% Similarity=-0.003 Sum_probs=142.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006627 441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMV 520 (638)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 520 (638)
+...|..+...+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...+..+.. ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 45677788888888899999999999988864 44667888899999999999999999999876 3344566777788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 006627 521 DLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDV 598 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 598 (638)
..+...++++.|.+.+.++ ...| +...+..+...+...|++++|+..++++++++|+++.++..+|.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8889999999999999887 3344 5778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 006627 599 AGVRRVMKEIRV 610 (638)
Q Consensus 599 ~~~~~~~~~~~~ 610 (638)
++.|++..+..+
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999998876543
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=5.3e-13 Score=123.98 Aligned_cols=208 Identities=12% Similarity=-0.024 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627 342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMY 421 (638)
Q Consensus 342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (638)
..+..+...+...|++++|...++++.... +.+...+..+...+...|+++.|...++.+.+.. +.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~------------ 103 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR------------ 103 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC------------
Confidence 344555555555566666666665554432 2233344444444444455555555444444432 22
Q ss_pred HhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHH
Q 006627 422 AKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVF 500 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 500 (638)
+...+..+...+...|++++|..+++++.+.+..| +...+..+..++...|++++|.+.+
T Consensus 104 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 104 -------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33455555666666666777777777666532344 3456777777788888888888888
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
+++.+. .+.+...+..++.++...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|++
T Consensus 165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 887763 2345667778888888888888888888877 3333 56677778888888999999999999999999998
Q ss_pred cchHHH
Q 006627 579 YGYNVL 584 (638)
Q Consensus 579 ~~~~~~ 584 (638)
+.....
T Consensus 243 ~~~~~~ 248 (252)
T 2ho1_A 243 LEYQEF 248 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=9.7e-13 Score=119.69 Aligned_cols=204 Identities=10% Similarity=-0.052 Sum_probs=138.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhc
Q 006627 379 MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMH 455 (638)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 455 (638)
+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.+++.. ..+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3334444444555555555555444433 3334455555555555566666655555443 22445566667777777
Q ss_pred -CChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 006627 456 -GCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAH 533 (638)
Q Consensus 456 -~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 533 (638)
|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++.++.+.|++++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 777888888877776323343 467777888888888888888888888763 3345677888888888889999998
Q ss_pred HHHHhC-CCC--CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 534 EMIKSM-PLR--PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 534 ~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
+.++++ ... .+...+..+...+...|+.+.|...++.+.+.+|+++.....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 888877 223 3566677777777889999999999999999999987766554
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=7.2e-13 Score=119.61 Aligned_cols=204 Identities=14% Similarity=-0.007 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 006627 342 MIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMY 421 (638)
Q Consensus 342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (638)
..+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..+.. |.+...+..+..++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444445555555555555555544321 2233344444444555555555555555555443 33344444444444
Q ss_pred HhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 006627 422 AKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFD 501 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 501 (638)
...+.. ... .....|++++|+..+++..+.. +-+...+..+..++...|++++|...|+
T Consensus 84 ~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 84 VALYRQ-----------AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp HHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 443000 000 0001144555555555554432 2233444555555555555555555555
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHH
Q 006627 502 KMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQI 571 (638)
Q Consensus 502 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 571 (638)
++.+. . .+...+..+..++...|++++|...++++ ...| +...+..+...+...|++++|+..++++
T Consensus 143 ~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 143 QALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55543 2 44445555555555555555555555554 2223 3444455555555555555555555543
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=8.1e-14 Score=141.89 Aligned_cols=209 Identities=11% Similarity=-0.019 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH-HHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627 392 LEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV-NGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVD 467 (638)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 467 (638)
++.+...++...... +.+...+..+...|...|++ ++|++.|++.. ..+...|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444454443332 34566667777777777777 77777777655 22466788888888888999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcc---------CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc--------CChH
Q 006627 468 MERSGVKPNGITFIGLLNACSHA---------GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA--------GLLD 530 (638)
Q Consensus 468 m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 530 (638)
..+. .|+...+..+..++... |++++|.+.++++.+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8875 57778888899999999 9999999999999873 344578888999999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 531 EAHEMIKSM-PLRP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 531 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
+|++.|+++ ...| +...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 4455 68889999999999999999999999999999999999999999999999999999765443
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=1.6e-13 Score=129.37 Aligned_cols=221 Identities=10% Similarity=-0.098 Sum_probs=181.0
Q ss_pred HhccCchHHHHHHHHHHHHhCC---CCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChH
Q 006627 386 CTEAGALEMGKWLHTYIEKQGL---EVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGE 459 (638)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 459 (638)
....|+++.|...++.+.+... +.+..++..+...+...|++++|...|+++. ..+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999988632 2356788889999999999999999999876 346788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
+|+..++++.+.. +.+...+..+..++...|++++|.+.++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999874 446788999999999999999999999999863 354444444555667789999999999776
Q ss_pred -CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 540 -PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ----NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 540 -~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...|+......++..+...++.++|...++++++..|. ++..+..++.+|...|++++|...++++.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 22333333334677778888999999999999998774 368899999999999999999999999987654
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=3.3e-12 Score=120.19 Aligned_cols=230 Identities=11% Similarity=-0.078 Sum_probs=166.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCCChhhHHHHH
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMKSK-DVMIWNAVISAYAQ----AHCIDKAFELFIHMKVSKVRPNEVTMVGLL 383 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 383 (638)
++..+..+...+...|++++|...|++..++ +...+..+...+.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667788899999999999999999987755 56678888889999 999999999999998875 677788888
Q ss_pred HHHhc----cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChH
Q 006627 384 SLCTE----AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGE 459 (638)
Q Consensus 384 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 459 (638)
..+.. .+++++|...++...+.+ +...+..+...|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 88888 999999999999998764 4455555555555500 0034445
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHH
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDE 531 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 531 (638)
+|+..+++..+.+ +...+..+...+.. .+++++|.+.+++..+. .+...+..+..+|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555555543 33445555555555 67777777777777653 234556666777777 777777
Q ss_pred HHHHHHhC-CCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCc
Q 006627 532 AHEMIKSM-PLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 532 A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
|.+++++. ... +...+..+...+.. .+++++|...++++.++.|+++
T Consensus 205 A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 205 ALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 77777766 222 25666677777777 7888888888888888887653
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=9.4e-14 Score=139.55 Aligned_cols=259 Identities=10% Similarity=-0.065 Sum_probs=170.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCC-h----hhHHHHHHHHhccCchHHHHHHHHHHHHh----C-CCCcccHHHH
Q 006627 347 VISAYAQAHCIDKAFELFIHMKVSKVRPN-E----VTMVGLLSLCTEAGALEMGKWLHTYIEKQ----G-LEVDVILKTA 416 (638)
Q Consensus 347 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 416 (638)
+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|+++.|...+++..+. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3445555666666666666655432 22 1 23444555555666666666666555432 1 1223345555
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCC---------CchhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIYR---------DICMWNAMMAGYGMHGC-----------------GEEALIFFVDMER 470 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~ 470 (638)
+...|...|++++|...+++.... ...++..+...+...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666554311 22356666667777777 7777777776543
Q ss_pred c----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627 471 S----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM-P 540 (638)
Q Consensus 471 ~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 540 (638)
. +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+..++...|++++|.+.++++ .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 21222 246777888888999999999999888753111112 236778888899999999999998876 1
Q ss_pred CC---C----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 541 LR---P----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 541 ~~---p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.. . ...++..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 1 14667788888999999999999999999875543 34788999999999999999999998764
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=3.7e-13 Score=130.91 Aligned_cols=260 Identities=12% Similarity=-0.020 Sum_probs=173.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCC-----hhhHHHHHHHHhccCchHHHHHHHHHHHHh----CCC-CcccHHHHH
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKVRPN-----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQ----GLE-VDVILKTAL 417 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 417 (638)
...+...|++++|...|+++.... |+ ...+..+...+...|+++.|...++...+. +.+ ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 445555666666666666655532 22 134445555566666666666666554332 111 124455566
Q ss_pred HHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCC--------------------hHHHHHHHHHH
Q 006627 418 VDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGC--------------------GEEALIFFVDM 468 (638)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m 468 (638)
...|...|++++|...+++... ++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6666777777777766665431 11 2356666677777777 77777777765
Q ss_pred HHc----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 469 ERS----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 469 ~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
... +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+...+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 21222 246777888889999999999999988753111111 236778888999999999999999876
Q ss_pred -C---CCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 540 -P---LRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 540 -~---~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
. ..++ ..++..+...+...|++++|...++++++..|.. ...+..++.+|...|++++|.+++++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1112 4567778888999999999999999999876543 347889999999999999999999988
Q ss_pred hhcC
Q 006627 606 KEIR 609 (638)
Q Consensus 606 ~~~~ 609 (638)
.+..
T Consensus 330 ~~~~ 333 (338)
T 3ro2_A 330 LEIS 333 (338)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 7543
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=5.5e-13 Score=133.60 Aligned_cols=269 Identities=13% Similarity=0.002 Sum_probs=123.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCC--C-C----chhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CcCCC-hh
Q 006627 310 LAMANALVDMYGKCREIRSARTLFDGMKS--K-D----VMIWNAVISAYAQAHCIDKAFELFIHMKVS----KVRPN-EV 377 (638)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ 377 (638)
...+......+...|++++|...|++..+ + + ...+..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33445556666666777776666665442 2 2 134555666666666666666666664322 11111 22
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhC----CC-CcccHHHHHHHHHHhcCC--------------------HHHHHH
Q 006627 378 TMVGLLSLCTEAGALEMGKWLHTYIEKQG----LE-VDVILKTALVDMYAKCGD--------------------VNGAYR 432 (638)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~ 432 (638)
.+..+...+...|+++.|...++...+.. .+ ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 34445555566666666666666554421 00 012344555555555555 555555
Q ss_pred HHHcCCC-----C----CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCcHHHHHH
Q 006627 433 LFSEAIY-----R----DICMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPN----GITFIGLLNACSHAGLVTEGKS 498 (638)
Q Consensus 433 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~ 498 (638)
.+++... + ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5443220 0 112344444445555555555555554443200 011 1234444444555555555555
Q ss_pred HHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HhhHHHHHHHHhhcCChHHHHH
Q 006627 499 VFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM-P---LRPN----MIVWGALLAASKLHKNPSMGEI 566 (638)
Q Consensus 499 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~A~~ 566 (638)
.+++..+...-.++ ...+..+...+...|++++|.+.++++ . ..++ ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55544321100011 233444444445555555555554443 0 0011 2333444444444555555555
Q ss_pred HHHHHhccCCCC
Q 006627 567 AATQILEIEPQN 578 (638)
Q Consensus 567 ~~~~~~~~~p~~ 578 (638)
.+++++++.+..
T Consensus 329 ~~~~al~~~~~~ 340 (406)
T 3sf4_A 329 FAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 555555544444
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=3.8e-10 Score=117.92 Aligned_cols=417 Identities=9% Similarity=0.009 Sum_probs=261.3
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCc---hHHHHHHHHHHHHhccCCCCchhH
Q 006627 135 RDVVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVAD---VDLGKAIHACVVRNCKDEKLGVAI 211 (638)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 211 (638)
.|..+|..++..+.+.+.++.+..+|+.+... .+.+...|..-+..-.+.++ .+.+..+|+..+...+.+ +++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~-~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN-NDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC-CCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC-CCHHH
Confidence 36778888999888888999999999988875 33444556666666666677 888888888887766421 26667
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHhccC------CC-CcccHHHHHHHHHh---------CCChHHHHHHHHHHH
Q 006627 212 ATALIDMYSKCGNL--------AYAKQLFNRLN------QN-SVVSWTVMISGYIR---------CNEINEGVRLFAEMI 267 (638)
Q Consensus 212 ~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 267 (638)
|...+....+.++. +...++|+... .+ +...|...+..... .++.+.+..+|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77766655554443 22335555422 12 22456655554332 234566677777766
Q ss_pred HcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc-------CCC--
Q 006627 268 EENVFPSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDG-------MKS-- 338 (638)
Q Consensus 268 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~-- 338 (638)
......-..+|.....-.... +...+..++.+. ..+++.|...+.+ +..
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 421111112222111111000 111122221111 0111222222211 110
Q ss_pred ------------C--C------chhHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc
Q 006627 339 ------------K--D------VMIWNAVISAYAQAH-------CIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA 391 (638)
Q Consensus 339 ------------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (638)
| + ...|...+.---..+ ..+.+..+|++.... ++-+...|......+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 0 0 123444443222221 123456678777654 24456677777777778888
Q ss_pred hHHHH-HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-------------CC------------chhH
Q 006627 392 LEMGK-WLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-------------RD------------ICMW 445 (638)
Q Consensus 392 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~ 445 (638)
.+.|. .+++...... |.+...+...+....+.|+++.|.++|+++.. |+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 9999988753 66777777888889999999999999987663 31 2367
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhc-cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627 446 NAMMAGYGMHGCGEEALIFFVDMERS-GVKPNGITFIGLLNACSH-AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL 523 (638)
Q Consensus 446 ~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (638)
...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ .++.+.|.++|+...+. ++.+...+...++..
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 88888888889999999999999875 2 2223344433333333 35599999999999985 444566677888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 524 GRAGLLDEAHEMIKSM-PLRP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
...|+.+.|..+|+++ ...| ....|..++..-...|+.+.+..+.+++.+..|+++.
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8999999999999997 3333 2467888888888999999999999999999998753
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=8.3e-13 Score=132.29 Aligned_cols=267 Identities=11% Similarity=-0.053 Sum_probs=167.8
Q ss_pred CChHhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCc---hhhHHHHHHHHHhcCChHHHHHHHhcCCC-----C----C
Q 006627 273 PSEITILSLIIECGFVGGLQLGKWLHAYILRNGFEFS---LAMANALVDMYGKCREIRSARTLFDGMKS-----K----D 340 (638)
Q Consensus 273 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~ 340 (638)
+....+......+...|+++.|...++...+...... ..++..+...+...|++++|...+++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455566667777888888888877777642211 24566777777778888887777765431 1 2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-CCC----hhhHHHHHHHHhccCc--------------------hHHH
Q 006627 341 VMIWNAVISAYAQAHCIDKAFELFIHMKVSKV-RPN----EVTMVGLLSLCTEAGA--------------------LEMG 395 (638)
Q Consensus 341 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a 395 (638)
...+..+...+...|++++|+..+++...... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 33566667777777888888877777654311 112 2255566667777777 7777
Q ss_pred HHHHHHHHHh----CC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCChHHH
Q 006627 396 KWLHTYIEKQ----GL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGCGEEA 461 (638)
Q Consensus 396 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A 461 (638)
...++...+. +. +....++..+...|...|++++|...+++... ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777765442 11 11234566677777777888888777766541 11 12666777777778888888
Q ss_pred HHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 006627 462 LIFFVDMERS----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 462 ~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 532 (638)
...+++..+. +..+. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+..++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8877776643 11111 345667777777788888888877776642111111 34566677777778888888
Q ss_pred HHHHHhC
Q 006627 533 HEMIKSM 539 (638)
Q Consensus 533 ~~~~~~~ 539 (638)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=3.1e-12 Score=112.26 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=135.9
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006627 410 DVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA 486 (638)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 486 (638)
+..+|..+...|...|++++|++.|++.. ..++..+..+..++...|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 45567777777888888888888887765 2356677778888888888888888888888764 4456677778888
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMG 564 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A 564 (638)
+...++++.|.+.+.+..+ ..+.+...+..+..++.+.|++++|++.++++ ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999886 34456678888899999999999999999887 4445 578899999999999999999
Q ss_pred HHHHHHHhccCCCCc
Q 006627 565 EIAATQILEIEPQNY 579 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~ 579 (638)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999864
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=2e-12 Score=113.47 Aligned_cols=165 Identities=11% Similarity=0.002 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG 524 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (638)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3334444555555555555555554432 234455556666666666666666666666542 2334555666666666
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006627 525 RAGLLDEAHEMIKSM-P-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVR 602 (638)
Q Consensus 525 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 602 (638)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|.+++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777766665 2 23356677778888888899999999999999999998889999999999999999999999
Q ss_pred HHHhhcCCcC
Q 006627 603 RVMKEIRVKK 612 (638)
Q Consensus 603 ~~~~~~~~~~ 612 (638)
+++.+..+..
T Consensus 168 ~~~~~~~~~~ 177 (186)
T 3as5_A 168 KKANELDEGA 177 (186)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHcCCCc
Confidence 9887655433
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=2.4e-12 Score=136.19 Aligned_cols=163 Identities=12% Similarity=0.063 Sum_probs=140.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627 442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD 521 (638)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 521 (638)
..+|+.|...+...|++++|+..|++..+.. +-+...+..+..+|.+.|++++|++.|+++++. .+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567778888888888888888888888763 334678888999999999999999999998863 2334678888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 006627 522 LLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA 599 (638)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 599 (638)
+|...|++++|++.++++ ...| +..+|..+...+...|++++|+..++++++++|+++.++..++.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999887 5556 47889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 006627 600 GVRRVMKE 607 (638)
Q Consensus 600 ~~~~~~~~ 607 (638)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=125.59 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHh------CC-
Q 006627 342 MIWNAVISAYAQAHCIDKAFELFIHMKVS-------KVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ------GL- 407 (638)
Q Consensus 342 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 407 (638)
..+..+...+...|++++|..+++++... ........+..+...+...|+++.|...++...+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666777778888888888888777552 11223345556666777777777777777766553 11
Q ss_pred CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Q 006627 408 EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNA 486 (638)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 486 (638)
+....++..+...|...|++++|...+++.. ++.+.... +-.| ....+..+...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~-~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRAL------------------------EIREKVLG-KDHPDVAKQLNNLALL 162 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------------------HHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH------------------------HHHHHhcC-CCChHHHHHHHHHHHH
Confidence 2234455556666666666666666554322 11111100 1112 22345555566
Q ss_pred HhccCcHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC------
Q 006627 487 CSHAGLVTEGKSVFDKMVHGL-----GLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSMP----------LRPN------ 544 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~------ 544 (638)
+...|++++|.++++++.+.. +..| ....+..+..++...|++++|.+.++++- ..|.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 666666666666666655420 0011 22445556666666666666666665541 1111
Q ss_pred -HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 545 -MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 545 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
...+......+...+.+.++...++++....|..+..+..++.+|...|++++|.+++++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222233345566777888888888888888899999999999999999999999987653
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=4.8e-11 Score=114.22 Aligned_cols=217 Identities=8% Similarity=0.015 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCcCCChhhHHHHHHHHh-------ccCch-------HHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006627 358 DKAFELFIHMKVSKVRPNEVTMVGLLSLCT-------EAGAL-------EMGKWLHTYIEKQGLEVDVILKTALVDMYAK 423 (638)
Q Consensus 358 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (638)
++|..+|++..... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555665554431 223334444444333 23443 5555555555542113334455555555555
Q ss_pred cCCHHHHHHHHHcCCC--C-Cch-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-ccCcHHHHHH
Q 006627 424 CGDVNGAYRLFSEAIY--R-DIC-MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS-HAGLVTEGKS 498 (638)
Q Consensus 424 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~ 498 (638)
.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555432 2 222 45555555555555555555555555432 222233322222211 2455555555
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 499 VFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P---LRP--NMIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
+|+++.+. .+.+...|..++..+.+.|+.++|..+|+++ . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555542 1223444555555555555555555555554 1 133 13344555555555555555555555555
Q ss_pred ccCCCC
Q 006627 573 EIEPQN 578 (638)
Q Consensus 573 ~~~p~~ 578 (638)
+..|++
T Consensus 269 ~~~p~~ 274 (308)
T 2ond_A 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHcccc
Confidence 555543
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=5.5e-12 Score=125.20 Aligned_cols=222 Identities=8% Similarity=-0.031 Sum_probs=144.6
Q ss_pred HHhccCchHHHHHHHHHHHHh----CCCC-cccHHHHHHHHHHhcCCHHHHHHHHHcCCC-----C-----CchhHHHHH
Q 006627 385 LCTEAGALEMGKWLHTYIEKQ----GLEV-DVILKTALVDMYAKCGDVNGAYRLFSEAIY-----R-----DICMWNAMM 449 (638)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 449 (638)
.+...|+++.|...++...+. +-++ ...++..+...|...|++++|...+++... + ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344555566666555555442 1011 234555566666666666666666554331 1 123566667
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CC-CCChhHHHHHH
Q 006627 450 AGYGMHGCGEEALIFFVDMERS----GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GL-VPKIEHYGCMV 520 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~ 520 (638)
.+|...|++++|+..+++..+. +-.+. ..++..+..+|...|++++|.+.+++..+-. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 7777777777777777776543 11111 1467778888888888888888888876511 22 22346677888
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-----CCC-HhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 521 DLLGRAGLLDEAHEMIKSM-PL-----RPN-MIVWGALLAASKLHKN---PSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
.++.+.|++++|.+.+++. .. .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 8888889999988888876 11 222 2234556677778888 77788877776 344455667889999999
Q ss_pred hcCCHHHHHHHHHHHhh
Q 006627 591 VANRWNDVAGVRRVMKE 607 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~ 607 (638)
..|++++|.+++++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998865
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.1e-09 Score=114.32 Aligned_cols=436 Identities=8% Similarity=-0.035 Sum_probs=259.0
Q ss_pred chHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCC---hHHHH
Q 006627 153 PEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGN---LAYAK 229 (638)
Q Consensus 153 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~ 229 (638)
..+.+..|++..... +-|..+|..++..+...++++.++.+++.++..-+. ....|...+..-.+.|+ ++.+.
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhhCCcchHHHHH
Confidence 444454555554443 346667777777777777777777777777766544 46666666666666666 77777
Q ss_pred HHHhccCC-----CCcccHHHHHHHHHhCCCh--------HHHHHHHHHHHH-cCc-cCCh-HhHHHHHHHhcc------
Q 006627 230 QLFNRLNQ-----NSVVSWTVMISGYIRCNEI--------NEGVRLFAEMIE-ENV-FPSE-ITILSLIIECGF------ 287 (638)
Q Consensus 230 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~------ 287 (638)
.+|++... |++..|...+....+.++. +.+.++|+.... -|. .|+. ..|...+.-...
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 77776653 4445555555544444332 222345544433 244 3432 344444432211
Q ss_pred ---cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 006627 288 ---VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELF 364 (638)
Q Consensus 288 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 364 (638)
.++.+.+..+|+..+......-..+|..... +.+. + +..+...++.- ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~---------~------~~~~a~~~~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQD---------V------NQLTARRHIGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHH---------H------CTTTHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHh---------c------CcchHHHHHHH--hhHHHHHHHHHH
Confidence 1233445555555442110001112211111 0000 0 00010011110 112344455555
Q ss_pred HHHHHc--CcC---CC--------------------hhhHHHHHHHHhccC-------chHHHHHHHHHHHHhCCCCccc
Q 006627 365 IHMKVS--KVR---PN--------------------EVTMVGLLSLCTEAG-------ALEMGKWLHTYIEKQGLEVDVI 412 (638)
Q Consensus 365 ~~m~~~--g~~---p~--------------------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 412 (638)
.++... ++. |. ...|...+.--...+ ..+.+..+|++....- +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 443211 111 11 012333332222211 1234556788777764 66788
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCc---
Q 006627 413 LKTALVDMYAKCGDVNGAY-RLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGV---------KPN--- 476 (638)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---------~p~--- 476 (638)
+|...+..+...|+.++|. .+|++.. ..+...|...+...-..|+++.|..+|+++.+... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888899999996 9998766 23555677788888899999999999999886410 132
Q ss_pred ---------HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC-C-CCCC
Q 006627 477 ---------GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA-GLLDEAHEMIKSM-P-LRPN 544 (638)
Q Consensus 477 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~-~~p~ 544 (638)
...|...+....+.|+.+.|..+|.++.+. ...+....|...+..-.+. ++.+.|..+|+.. . .+-+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777777778889999999999999873 1122334444333333344 4589999999887 2 2335
Q ss_pred HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627 545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ---NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK 612 (638)
Q Consensus 545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 612 (638)
...|..++......|+.+.|+.+|+++++..|+ ....|..+...-...|+.+.+..+.+++.+.-+..
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 667778888888899999999999999998883 45678888888899999999999999998776643
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=9.1e-11 Score=112.28 Aligned_cols=213 Identities=8% Similarity=-0.043 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHH-------hcCCH-------HHHHHHHHcCCC---C-CchhHHHHHHHHHh
Q 006627 393 EMGKWLHTYIEKQGLEVDVILKTALVDMYA-------KCGDV-------NGAYRLFSEAIY---R-DICMWNAMMAGYGM 454 (638)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 454 (638)
+.|..+|++..... +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666665543 445555655555554 23554 666666665442 2 33466666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCcH-H-HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHH-hcCChHH
Q 006627 455 HGCGEEALIFFVDMERSGVKPNG-I-TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLG-RAGLLDE 531 (638)
Q Consensus 455 ~~~~~~A~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 531 (638)
.|++++|..+|++..+. .|+. . .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 67777777777766653 3432 2 5666666666666677777777666642 2233334433322211 2466777
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 532 AHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEI---EPQ-NYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 532 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
|.++|+++ ...| +...|..++..+...|++++|+.+|+++++. .|+ ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77766665 2222 4556666666666667777777777777664 342 4456666666666667777777666666
Q ss_pred hhcCC
Q 006627 606 KEIRV 610 (638)
Q Consensus 606 ~~~~~ 610 (638)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 55444
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.9e-11 Score=111.48 Aligned_cols=167 Identities=7% Similarity=-0.113 Sum_probs=100.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627 442 ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD 521 (638)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 521 (638)
+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..+ ..+.+...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444445555555666666666666655554224555555555666666666666666666654 22223455555666
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC-H-------hhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--CcchHHHHHHHHH
Q 006627 522 LLGRAGLLDEAHEMIKSM-PLRPN-M-------IVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNIYA 590 (638)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 590 (638)
++...|++++|++.+++. ...|+ . ..|..+...+...|++++|+..++++++++|+ ++..+..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 666666666666666555 22232 2 33555555666666666666666666666666 6666666666666
Q ss_pred hcCCH---------------------------HHHHHHHHHHhhcCC
Q 006627 591 VANRW---------------------------NDVAGVRRVMKEIRV 610 (638)
Q Consensus 591 ~~g~~---------------------------~~A~~~~~~~~~~~~ 610 (638)
..|+. ++|+.++++..+..+
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 66666 999999998876554
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=3.2e-12 Score=128.31 Aligned_cols=135 Identities=11% Similarity=-0.031 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC----Ch
Q 006627 443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPN----GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP----KI 513 (638)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~ 513 (638)
..+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...++++.+...-.. ..
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566667777777888888777777664310 011 13677788888899999999998888765311111 14
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PL------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
..+..+..++...|++++|.++++++ .. .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 56778888889999999999998876 11 11 1346777888899999999999999999988765
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=3.3e-11 Score=109.85 Aligned_cols=206 Identities=11% Similarity=0.030 Sum_probs=155.4
Q ss_pred CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHH
Q 006627 374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMA 450 (638)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~ 450 (638)
.|+..+......+...|++++|...++...+..-+++...+..+..++...|++++|...+++.... +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4566777778888899999999999999998773377777777889999999999999999887632 4567888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC---hhHHHHHH
Q 006627 451 GYGMHGCGEEALIFFVDMERSGVKPNG-------ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK---IEHYGCMV 520 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 520 (638)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.++++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999988864 3344 4577777888889999999999999875 3454 56777777
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 521 DLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
.++...|+. .++++ .. ..+...+.... ....+.+++|+..++++++++|+++.+...++.+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 777665543 22332 11 12233333222 344567899999999999999999988888877654
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1e-11 Score=120.61 Aligned_cols=134 Identities=13% Similarity=-0.006 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hh
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERS----GVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IE 514 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 514 (638)
.+..+...+...|++++|...+++..+. +.++ ...++..+...+...|++++|.+.+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 5566666777777777777777776542 1111 1236777788888889999999888887652111111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC---CC----CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-PL---RP----NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
.+..+..++...|++++|...++++ .. .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777888888999999999988876 11 11 1446777888899999999999999999988765
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=5.4e-11 Score=118.00 Aligned_cols=229 Identities=8% Similarity=-0.050 Sum_probs=156.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-cCCC----hhhHHHHHHHHhccCchHHHHHHHHHHHHhC--C----CCcccHHHH
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSK-VRPN----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQG--L----EVDVILKTA 416 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ 416 (638)
...+...|++++|+..+++....- -.++ ..++..+...+...|+++.|...+++..+.- . +....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 344556666666666666654321 0111 2345555566666667776666666655421 0 112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHHHHH
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERS----GVKPN-GITFIG 482 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 482 (638)
+...|...|++++|...+++... ++ ..++..+..+|...|++++|+..+++..+. +..|+ ..++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77777777888888777766541 11 136777888888889999999888887762 32243 467888
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HhhHHHHHHHH
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGL---GLVPKIEHYGCMVDLLGRAGL---LDEAHEMIKSMPLRPN-MIVWGALLAAS 555 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 555 (638)
+..++...|++++|.+.+++..+.. +.+.....+..+...+...|+ .++|+.++++.+..|+ ...+..+...+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887531 111222345677888888998 8999999999865554 45677888999
Q ss_pred hhcCChHHHHHHHHHHhccCC
Q 006627 556 KLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p 576 (638)
...|++++|...+++++++..
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988544
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=1.6e-11 Score=124.88 Aligned_cols=180 Identities=9% Similarity=-0.013 Sum_probs=156.7
Q ss_pred HHHHHHHHHcCC---CCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006627 427 VNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCG-EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDK 502 (638)
Q Consensus 427 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 502 (638)
++++...+++.. ..+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666665443 33667888899999999999 99999999999874 44578999999999999999999999999
Q ss_pred HhhhcCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc--------CChHH
Q 006627 503 MVHGLGLVPKIEHYGCMVDLLGRA---------GLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH--------KNPSM 563 (638)
Q Consensus 503 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~~ 563 (638)
+.+ ..|+...+..+..++... |++++|++.++++ ...| +...|..+..++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 985 457788899999999999 9999999999998 4445 578899999999888 99999
Q ss_pred HHHHHHHHhccCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 564 GEIAATQILEIEP---QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 564 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
|+..++++++++| +++..+..++.+|...|++++|++.|++..+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 9999999999999999999999999999876543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=7.8e-10 Score=109.16 Aligned_cols=256 Identities=13% Similarity=-0.043 Sum_probs=127.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCcCCChh----hHHHHHHHHhccCchHHHHHHHHHHHHhCC-CCc----ccHHHHHHHHH
Q 006627 351 YAQAHCIDKAFELFIHMKVSKVRPNEV----TMVGLLSLCTEAGALEMGKWLHTYIEKQGL-EVD----VILKTALVDMY 421 (638)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 421 (638)
+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+++.....- ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344555555555555544322111111 222333344445555555555554443210 001 12233445555
Q ss_pred HhcCCHHHHHHHHHcCCC----------C-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--cHHHHHHHHHH
Q 006627 422 AKCGDVNGAYRLFSEAIY----------R-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVK--P--NGITFIGLLNA 486 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~~l~~~ 486 (638)
...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 556666666555544321 1 1123444555566666666666666665543211 1 12345556666
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HhhHHHHHHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYG-----CMVDLLGRAGLLDEAHEMIKSM-PLRPN-----MIVWGALLAAS 555 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~ 555 (638)
+...|++++|...+++.............+. ..+..+...|++++|..++++. ...|. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 6677777777777766654211111111111 1223355667777777777666 11111 12344555666
Q ss_pred hhcCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 556 KLHKNPSMGEIAATQILEIEPQN------YGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
...|++++|...++++.+..+.. ...+..++.++...|++++|...+++..
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66777777777777776543321 1255566777777777777777766654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=7e-11 Score=103.50 Aligned_cols=169 Identities=14% Similarity=-0.031 Sum_probs=143.5
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627 411 VILKTALVDMYAKCGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC 487 (638)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 487 (638)
...+..+...+...|++++|...++++... +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345666778888999999999999987733 56778888899999999999999999998874 55678888899999
Q ss_pred hccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHH
Q 006627 488 SHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~ 565 (638)
...|++++|.++++++.+. .+.+...+..+..++...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999873 4556788888999999999999999999987 3333 5788889999999999999999
Q ss_pred HHHHHHhccCCCCcchH
Q 006627 566 IAATQILEIEPQNYGYN 582 (638)
Q Consensus 566 ~~~~~~~~~~p~~~~~~ 582 (638)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999876543
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=4.4e-11 Score=118.34 Aligned_cols=221 Identities=10% Similarity=-0.041 Sum_probs=141.3
Q ss_pred HhccCchHHHHHHHHHHHHhCC--C---CcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-----CC-----chhHHHHHH
Q 006627 386 CTEAGALEMGKWLHTYIEKQGL--E---VDVILKTALVDMYAKCGDVNGAYRLFSEAIY-----RD-----ICMWNAMMA 450 (638)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l~~ 450 (638)
+...|+++.|...+++..+... + ....++..+...|...|+++.|...+++... ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4455666666666665544210 0 1234455566666666666666666554331 11 235666677
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CCCCChhHHHHHHHH
Q 006627 451 GYGMHGCGEEALIFFVDMERS----GVKP-NGITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GLVPKIEHYGCMVDL 522 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~ 522 (638)
+|...|++++|.+.+++..+. +-++ ...++..+..+|...|++++|.+.+++..+-. +.+....++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777777777777777776542 1111 12467778888888889999888888877511 222235667778888
Q ss_pred HHhcCChHHHHHHHHhC----CC--CCC-HhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627 523 LGRAGLLDEAHEMIKSM----PL--RPN-MIVWGALLAASKLHKN---PSMGEIAATQILEIEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 592 (638)
+.+.|++++|.+++++. +. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88899999998888876 11 222 2334455556666777 77777777762 23344456778899999999
Q ss_pred CCHHHHHHHHHHHhh
Q 006627 593 NRWNDVAGVRRVMKE 607 (638)
Q Consensus 593 g~~~~A~~~~~~~~~ 607 (638)
|++++|.+++++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988754
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=2.4e-11 Score=116.57 Aligned_cols=237 Identities=14% Similarity=0.050 Sum_probs=138.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCC--------C---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc------Cc
Q 006627 310 LAMANALVDMYGKCREIRSARTLFDGMKS--------K---DVMIWNAVISAYAQAHCIDKAFELFIHMKVS------KV 372 (638)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~ 372 (638)
..++..+...+...|++++|...++++.+ . ....+..+...+...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455566666666666666666665543 1 2345666777778888888888888776543 21
Q ss_pred CC-ChhhHHHHHHHHhccCchHHHHHHHHHHHHh------CC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchh
Q 006627 373 RP-NEVTMVGLLSLCTEAGALEMGKWLHTYIEKQ------GL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICM 444 (638)
Q Consensus 373 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 444 (638)
.| ....+..+...+...|+++.|...++.+.+. +. +.....+..+...+...|++++|.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------------- 173 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE------------- 173 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH-------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH-------------
Confidence 22 3446667778888899999999988887653 11 112333444444555555555554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc------CCCC
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERS------GVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGL------GLVP 511 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p 511 (638)
.+++++.+. +..|+ ..++..+..++...|++++|.++++++.+.. ...+
T Consensus 174 ------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 174 ------------------YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ------------------HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444444432 11232 2456777777778888888888877776420 0111
Q ss_pred C-------hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 512 K-------IEHYGCMVDLLGRAGLLDEAHEMIKSMP-LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 512 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
. ...+..+...+...+.+.+|...++... ..| ...++..+...+...|++++|...+++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122222333445566666666666662 334 4677888999999999999999999999998875
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=2.1e-10 Score=108.18 Aligned_cols=208 Identities=10% Similarity=0.014 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHhccCchHHHHHHHHHHHHh------CC-CCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHH
Q 006627 376 EVTMVGLLSLCTEAGALEMGKWLHTYIEKQ------GL-EVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAM 448 (638)
Q Consensus 376 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 448 (638)
..++..+...+...|+++.|...++.+.+. +- +....++..+...|...|++++|.+.+++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------ 110 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR------------ 110 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH------------
Confidence 344555666666677777777776666543 11 22234555555666666666666655533
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHH
Q 006627 449 MAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-----GLVP-KIEHYGCMVDL 522 (638)
Q Consensus 449 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~ 522 (638)
|+.++++......+....++..+...+...|++++|..+++++.+.. +..| ....+..+..+
T Consensus 111 ------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 111 ------------ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp ------------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 22222221111111123556666777777777777777777765420 1122 23556667777
Q ss_pred HHhcCChHHHHHHHHhC-C---------CCCC-HhhHHHHHHHHhhcC------ChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 523 LGRAGLLDEAHEMIKSM-P---------LRPN-MIVWGALLAASKLHK------NPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
+...|++++|.++++++ . ..+. ...+..+.......+ .+..+...++......|..+..+..+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77777777777777665 1 1222 223333333333222 23344444444444556667789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 006627 586 SNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+.+|...|++++|..++++..+
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=8.2e-10 Score=100.10 Aligned_cols=184 Identities=11% Similarity=-0.090 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCC--CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHH
Q 006627 413 LKTALVDMYAKCGDVNGAYRLFSEAIY--RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG----ITFIG 482 (638)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ 482 (638)
.+..+...+...|++++|...|+++.. |+ ...+..+..++...|++++|+..|+++.+.. |+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHH
Confidence 344455566666777777776666552 22 1345556666666677777777766666542 221 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 006627 483 LLNACSH------------------AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN 544 (638)
Q Consensus 483 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 544 (638)
+..++.. .|++++|...|+++++. .+-+............-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence 3333332 34555555555555432 111111111111000000000
Q ss_pred HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627 545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPG 615 (638)
Q Consensus 545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 615 (638)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...++..+.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 01113456678899999999999999999999976 579999999999999999999999998887766554
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=3.7e-09 Score=104.46 Aligned_cols=228 Identities=7% Similarity=-0.047 Sum_probs=158.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCc-CCC----hhhHHHHHHHHhccCchHHHHHHHHHHHHhC--C---C-CcccHHHH
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKV-RPN----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQG--L---E-VDVILKTA 416 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~ 416 (638)
...+...|++++|+..+++...... .++ ..++..+...+...|+++.|...+++..+.. . + ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777654311 122 2345556666777777777777777665421 0 1 12445667
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcHHHHHHH
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIY-----RD----ICMWNAMMAGYGMHGCGEEALIFFVDMERS----GVKPNGITFIGL 483 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l 483 (638)
+...|...|++++|.+.+++... ++ ..++..+..+|...|++++|+..+++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 77778888888888877766542 12 246677788888889999999988887761 223335678889
Q ss_pred HHHHhccCcHHHHHHHHHHHhhhcCC---CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HhhHHHHHHHHh
Q 006627 484 LNACSHAGLVTEGKSVFDKMVHGLGL---VPKIEHYGCMVDLLGRAGL---LDEAHEMIKSMPLRPN-MIVWGALLAASK 556 (638)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~ 556 (638)
...+.+.|++++|...+++..+...- +.....+..+...+...|+ .++|+.++++.+..|+ ...+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999998864222 1223455666677778888 8999999998754444 456677888999
Q ss_pred hcCChHHHHHHHHHHhccC
Q 006627 557 LHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~~~ 575 (638)
..|++++|...++++++..
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998743
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=2.6e-10 Score=108.07 Aligned_cols=162 Identities=6% Similarity=-0.109 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHhcc-CcHHHHHHHHHHHhhhcCCCCC----h
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGV---KPN--GITFIGLLNACSHA-GLVTEGKSVFDKMVHGLGLVPK----I 513 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~ 513 (638)
+|+.+..+|...|++++|+..+++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 455555555566666666666555543210 111 24567777777775 8888888888887653111111 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--------hhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch---
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM--------IVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY--- 581 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--- 581 (638)
.++..++..+.+.|++++|+..++++ ...|+. ..+..+...+...|++++|+..++++++++|+....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45777788888888888888888876 223321 145666777778888888888888888888875442
Q ss_pred --HHHHHHHHH--hcCCHHHHHHHHHHH
Q 006627 582 --NVLMSNIYA--VANRWNDVAGVRRVM 605 (638)
Q Consensus 582 --~~~l~~~~~--~~g~~~~A~~~~~~~ 605 (638)
+..++.++. ..+++++|+..|+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334555554 456788888887654
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.7e-09 Score=99.92 Aligned_cols=245 Identities=7% Similarity=-0.030 Sum_probs=158.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCchh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHH
Q 006627 317 VDMYGKCREIRSARTLFDGMKSKDVMI-WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMG 395 (638)
Q Consensus 317 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 395 (638)
++...-.|.+..++.-...+...+... -.-+.+++...|+++.. ..-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 445566788888888666665433332 23345777777776631 11233333444443333 222 5
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627 396 KWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYR-----DICMWNAMMAGYGMHGCGEEALIFFVDMER 470 (638)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 470 (638)
...+++....+ +++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66676666554 455555567788888889999998888876432 445677778888888899999998888877
Q ss_pred cCCCC-----cHHHHHHHHHHH--hccC--cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627 471 SGVKP-----NGITFIGLLNAC--SHAG--LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-P 540 (638)
Q Consensus 471 ~~~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 540 (638)
. .| +..+...++.++ ...| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+ .
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 56 356666666553 3334 788888888888653 344233333444788888888888888765 2
Q ss_pred C----------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 541 L----------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 541 ~----------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
. .| ++.++..++......|+ +|.+.++++.+..|+++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 24 45666455555555665 778888888888888765543
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=5.9e-10 Score=103.80 Aligned_cols=185 Identities=8% Similarity=-0.080 Sum_probs=112.4
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-C---chhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc-HHHH
Q 006627 409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIY--R-D---ICMWNAMMAGYGMHGCGEEALIFFVDMERSGV-KPN-GITF 480 (638)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~ 480 (638)
.+...+..+...+.+.|++++|...|+++.. | + ...+..+..++...|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3445555666667777777777777776652 2 2 34556666667777777777777777766521 112 2445
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHH
Q 006627 481 IGLLNACSH--------AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALL 552 (638)
Q Consensus 481 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 552 (638)
..+..++.. .|++++|...|+++.+.. +.+......+.......++. ...+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 555666666 677777777777766532 11112221111110000000 11135566
Q ss_pred HHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCC
Q 006627 553 AASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVA----------NRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 610 (638)
..+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+..+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 77788888888888888888888874 34778888888866 888888888888876544
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=2.5e-11 Score=102.01 Aligned_cols=140 Identities=9% Similarity=-0.095 Sum_probs=106.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCCh
Q 006627 451 GYGMHGCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLL 529 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 529 (638)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|+++++. .+-+...|..+..++.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344556777777777776543 343 345667778888888888888888888762 334567788888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627 530 DEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEI-AATQILEIEPQNYGYNVLMSNIYAVANR 594 (638)
Q Consensus 530 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 594 (638)
++|+..|+++ ...| ++.++..+...+...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888877 4455 47788888888999998876655 4689999999999999999999888875
No 89
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=2.8e-10 Score=120.42 Aligned_cols=166 Identities=12% Similarity=0.137 Sum_probs=128.2
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHHcCC--C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006627 409 VDVILKTALVDMYAKCGDVNGAYRLFSEAI--Y-RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLN 485 (638)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 485 (638)
.+...++.|...|.+.|++++|++.|++.. . .+..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345667777777777777777777777655 2 345677778888888888888888888888763 334578888888
Q ss_pred HHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHHHhhcCChHH
Q 006627 486 ACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAASKLHKNPSM 563 (638)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 563 (638)
++...|++++|++.|+++.+. .+-+...+..+..+|...|++++|++.++++ ...|+ ...+..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888762 2334677888888888889999998888887 55564 6788888888889999999
Q ss_pred HHHHHHHHhccCCC
Q 006627 564 GEIAATQILEIEPQ 577 (638)
Q Consensus 564 A~~~~~~~~~~~p~ 577 (638)
|.+.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 99999988876553
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=9e-10 Score=90.49 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHHHhh
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAASKL 557 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 557 (638)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|..+++++ .. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555442 1223444555555555555666666555554 11 2245566677777888
Q ss_pred cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
.|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888999999999999999888876544
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=1.6e-09 Score=102.57 Aligned_cols=226 Identities=10% Similarity=-0.052 Sum_probs=138.4
Q ss_pred ChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CcCCC-hhhHHHHHHHHhccCchHHHHHHH
Q 006627 325 EIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVS----KVRPN-EVTMVGLLSLCTEAGALEMGKWLH 399 (638)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 399 (638)
++++|...|.+ ....|...|++++|...|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36667666554 355667777777777777765432 11111 234555555555566666666555
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHHcCC---CC
Q 006627 400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMH-GCGEEALIFFVDMERSGV---KP 475 (638)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~---~p 475 (638)
+...+. +...|++..+ ..+++.+...|... |++++|+..+++..+... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 554431 1112222221 12455667777775 888888888887765310 11
Q ss_pred -c-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHh-
Q 006627 476 -N-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-----EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMI- 546 (638)
Q Consensus 476 -~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 546 (638)
. ..++..+...+...|++++|...|+++.+...-.+.. ..+..++.++...|++++|...+++. ...|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 1 3467888888999999999999999988632111221 15677888899999999999999987 4555422
Q ss_pred -----hHHHHHHHHh--hcCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 006627 547 -----VWGALLAASK--LHKNPSMGEIAATQILEIEPQNYGYNVLMSN 587 (638)
Q Consensus 547 -----~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 587 (638)
.+..++.++. ..+++++|+..|+++.+++|.+...+..+-.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 2344455554 3467889999999999988876544444433
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=7.3e-10 Score=103.19 Aligned_cols=204 Identities=11% Similarity=-0.044 Sum_probs=144.5
Q ss_pred CChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-C---chh
Q 006627 374 PNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD---VILKTALVDMYAKCGDVNGAYRLFSEAIY--R-D---ICM 444 (638)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~ 444 (638)
.+...+..+...+.+.|+++.|...|+.+.+.. |.+ ...+..+..+|.+.|++++|...|++... | + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566677778889999999999999998865 334 66788889999999999999999998773 3 2 345
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhH
Q 006627 445 WNAMMAGYGM--------HGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEH 515 (638)
Q Consensus 445 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 515 (638)
+..+..++.. .|++++|+..|++..+. .|+. .....+. .+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHH
Confidence 6777888888 99999999999999986 3433 2222211 11111110 0112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhc----------CChHHHHHHHHHHhccCCCCcc
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLH----------KNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
+..+..+|.+.|++++|+..++++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 445677788888888888888776 22332 45666677777655 8899999999999999999864
Q ss_pred ---hHHHHHHHHHhcCCHHHHH
Q 006627 581 ---YNVLMSNIYAVANRWNDVA 599 (638)
Q Consensus 581 ---~~~~l~~~~~~~g~~~~A~ 599 (638)
+...+..++...|+++++.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666666666655443
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=4.4e-10 Score=119.67 Aligned_cols=145 Identities=9% Similarity=-0.100 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627 443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL 522 (638)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (638)
..+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|+++.+. .+.+...+..+..+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 344444444444555555555555544432 223344444444555555555555555555431 12233444445555
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 523 LGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
+.+.|++++ ++.++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 555555555 5554444 2222 234444555555555555555555555555555555555555555444
No 94
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=5.5e-08 Score=95.83 Aligned_cols=191 Identities=11% Similarity=0.001 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC-------C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC--C--Chhh
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKS-------K----DVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVR--P--NEVT 378 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~ 378 (638)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444555555666665555544321 1 1123444555666677777777777665443211 1 1223
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCcc-cHHH-----HHHHHHHhcCCHHHHHHHHHcCCCCCc-------hhH
Q 006627 379 MVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDV-ILKT-----ALVDMYAKCGDVNGAYRLFSEAIYRDI-------CMW 445 (638)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~ 445 (638)
+..+...+...|+++.|...++......-.++. ..+. ..+..+...|++++|...+++...++. ..+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 445555666677777777777666543111111 1111 122335566666666666666553321 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627 446 NAMMAGYGMHGCGEEALIFFVDMERS----GVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMV 504 (638)
Q Consensus 446 ~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 504 (638)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555555555555555554321 111111 133334444445555555555555443
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=7.2e-09 Score=95.83 Aligned_cols=241 Identities=7% Similarity=-0.032 Sum_probs=166.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 006627 348 ISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDV 427 (638)
Q Consensus 348 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 427 (638)
|+-..-.|++..++.-...+.. .........+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3455668888888874333211 11222333445777777766531 11133333444444333 322
Q ss_pred HHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627 428 NGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKP-NGITFIGLLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 428 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 503 (638)
|...|++... ++...+..+..++...|++++|++++.+.+..+-.+ +...+...+..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776652 455566678888999999999999999987665212 4577888899999999999999999999
Q ss_pred hhhcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 504 VHGLGLVP-----KIEHYGCMVDL--LGRAG--LLDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 504 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
.+ ..| +..+...|..+ ....| +.++|..+|+++ ...|+..+...+++++.+.|++++|+..++.+.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 356 24555555555 33344 899999999998 4456534444555688899999999999998887
Q ss_pred c----------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 574 I----------EPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 574 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
. +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 6 58899999888888888998 88999999877654
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=1.8e-09 Score=101.86 Aligned_cols=172 Identities=10% Similarity=-0.028 Sum_probs=137.0
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCC
Q 006627 431 YRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLV 510 (638)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 510 (638)
...+......+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++++... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 334444443445556667777888899999999999988874 446678888999999999999999999988753 4
Q ss_pred CChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC--cchHHHH
Q 006627 511 PKIEHYG-CMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN--YGYNVLM 585 (638)
Q Consensus 511 p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l 585 (638)
|+..... .....+...++.++|...++++ ...| +...+..+...+...|++++|+..++++++.+|++ +.++..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 5543332 2233466778888899888887 3345 57889999999999999999999999999999998 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 006627 586 SNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~ 606 (638)
+.+|...|+.++|...+++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999988764
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1.6e-10 Score=96.96 Aligned_cols=125 Identities=10% Similarity=-0.036 Sum_probs=104.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK 559 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 559 (638)
|...+...|++++|++.++.... ..|+ ...+..+..+|.+.|++++|++.|+++ ...| ++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566788999999999998864 3343 455667899999999999999999998 5555 5889999999999999
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH-HHHHhhcCC
Q 006627 560 NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV-RRVMKEIRV 610 (638)
Q Consensus 560 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 610 (638)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 577765443
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=5.3e-09 Score=85.77 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=106.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL 523 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (638)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667778888888888888888888764 446677888888888889999999999988763 344566778888889
Q ss_pred HhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 524 GRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
...|++++|.++++++ ... .+...+..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999887 223 356778888889999999999999999999988863
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=2.6e-09 Score=111.83 Aligned_cols=160 Identities=10% Similarity=-0.037 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 006627 424 CGDVNGAYRLFSEAIYR---DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVF 500 (638)
Q Consensus 424 ~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 500 (638)
.|++++|.+.+++.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47888999999887632 56788888999999999999999999998764 445678888999999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc---CChHHHHHHHHHHhccC
Q 006627 501 DKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH---KNPSMGEIAATQILEIE 575 (638)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 575 (638)
++..+. .+.+...+..+..++.+.|++++|.+.++++ ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999873 3445678888999999999999999999887 3444 567888888888888 99999999999999999
Q ss_pred CCCcchHHHHH
Q 006627 576 PQNYGYNVLMS 586 (638)
Q Consensus 576 p~~~~~~~~l~ 586 (638)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888888776
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=1.9e-09 Score=93.44 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=110.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-H
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL-L 523 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 523 (638)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+. .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3444555666677777777777665542 334566777777777777777777777776543 2233322222211 1
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHH
Q 006627 524 GRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN--YGYNVLMSNIYAVANRWNDVA 599 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 599 (638)
...+...+|...++++ ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223334566777666 3455 57888889999999999999999999999999975 558999999999999999999
Q ss_pred HHHHHHhh
Q 006627 600 GVRRVMKE 607 (638)
Q Consensus 600 ~~~~~~~~ 607 (638)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987753
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=2.1e-08 Score=89.61 Aligned_cols=162 Identities=8% Similarity=-0.083 Sum_probs=127.6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----cHHHHHHHHHHHhhhcCCCCChhH
Q 006627 440 RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG----LVTEGKSVFDKMVHGLGLVPKIEH 515 (638)
Q Consensus 440 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~ 515 (638)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355666667777777788888888888887765 45666677777777 6 889999999988763 35567
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHH
Q 006627 516 YGCMVDLLGR----AGLLDEAHEMIKSM-PLRPN---MIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 516 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
+..|...|.. .+++++|.+++++. ...|. +..+..+...|.. .+++++|...++++.++ |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 78999999999887 44443 7888888888887 78899999999999998 66788899
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHHhhcCC
Q 006627 584 LMSNIYAVA-N-----RWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 584 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 610 (638)
.|+.+|..- | ++++|.+.|++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998764 3 89999999999877664
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=6.5e-09 Score=92.75 Aligned_cols=130 Identities=6% Similarity=-0.005 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 446 NAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 446 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
..+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...|+++.+. .+.+...+..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 347788889999999999999998874 446678899999999999999999999999873 34456788888888766
Q ss_pred cCC--hHHHHHHHHhCC-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 526 AGL--LDEAHEMIKSMP-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 526 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
.|+ .+.+...++... ..|....+.....++...|++++|+..++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666653 22233344555666777899999999999999999974
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=1e-07 Score=89.28 Aligned_cols=210 Identities=13% Similarity=0.073 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC--CHHHHHHHHHcCCC---CCchhHHHHHHHH----Hhc---CChHHH
Q 006627 394 MGKWLHTYIEKQGLEVDVILKTALVDMYAKCG--DVNGAYRLFSEAIY---RDICMWNAMMAGY----GMH---GCGEEA 461 (638)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~A 461 (638)
+|....+.+...+ |-+..+++.-...+...| ++++++++++.+.. .+..+|+.-...+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4444444444433 333333444444444444 55555555554441 1333444333333 333 567777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH--HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC------hHHHH
Q 006627 462 LIFFVDMERSGVKPNGITFIGLLNACSHAGLVT--EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL------LDEAH 533 (638)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~ 533 (638)
+.+++++.+.. +-|...|..-...+.+.|.++ +++++++++.+. .+-+...|+.-..++.+.|+ +++++
T Consensus 130 L~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 130 FDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 77887777764 446666766666666677766 778888887763 34455666666666666665 77777
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHhhcCC-hHHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 534 EMIKSM-PLRP-NMIVWGALLAASKLHKN-PSMGEIAATQILEIE---PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 534 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+.++++ ...| |...|..+...+...|+ .+....+++++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777766 3344 57777777777777766 444666777777766 77788888888888888888888888888764
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=3e-09 Score=88.65 Aligned_cols=98 Identities=7% Similarity=-0.054 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
...+..+...+.+.|++++|...|+++ ...| ++..|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456667777888888888888888877 4445 57888899999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCC
Q 006627 591 VANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~~ 610 (638)
..|++++|+..|++..+..+
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999998876543
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2e-08 Score=106.91 Aligned_cols=169 Identities=12% Similarity=-0.069 Sum_probs=101.8
Q ss_pred hccCchHHHHHHHHHHH--------HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhc
Q 006627 387 TEAGALEMGKWLHTYIE--------KQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMH 455 (638)
Q Consensus 387 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 455 (638)
...|++++|.+.++... +.. +.+...+..+...|...|++++|.+.|++.. ..+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666665 322 4445556666666666677777766666655 22455666666666777
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006627 456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEM 535 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 535 (638)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+. .+.+...+..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766653 2244566666667777777777 7777776652 233445666677777777777777777
Q ss_pred HHhC-CCCCC-HhhHHHHHHHHhhcCC
Q 006627 536 IKSM-PLRPN-MIVWGALLAASKLHKN 560 (638)
Q Consensus 536 ~~~~-~~~p~-~~~~~~l~~~~~~~~~ 560 (638)
++++ ...|+ ...+..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7766 45554 4555555555544443
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=4.4e-09 Score=85.02 Aligned_cols=109 Identities=13% Similarity=-0.016 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS 555 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 555 (638)
..+......+.+.|++++|++.|++.++ -.+.+...|..+..++.+.|++++|++.++++ ...| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3455556666666666666666666654 22334455555666666666666666666555 2233 355566666666
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
...|++++|+..++++++++|+++.++..|+.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 666666666666666666666666666555544
No 107
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=1.9e-09 Score=101.50 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHH
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL-----GLVP-KIEHYGCMVDLLGRAGLLDEAH 533 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~ 533 (638)
+|++++++......+....++..+...+...|++++|...++++.+.. +..| ....+..+..++...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 344444444432212234667788888888888888888888877531 1122 3467778888888889999888
Q ss_pred HHHHhC-CC--------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCH
Q 006627 534 EMIKSM-PL--------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEI--------EPQNYGYNVLMSNIYAVANRW 595 (638)
Q Consensus 534 ~~~~~~-~~--------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~ 595 (638)
++++++ .. .| ...++..+...+...|++++|...+++++++ .|....++..++.+|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 888776 11 23 3567788888899999999999999999987 666677899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 006627 596 NDVAGVRRVMKEI 608 (638)
Q Consensus 596 ~~A~~~~~~~~~~ 608 (638)
++|.+++++..+.
T Consensus 186 ~~A~~~~~~~l~~ 198 (283)
T 3edt_B 186 QDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=7.3e-09 Score=92.45 Aligned_cols=158 Identities=9% Similarity=-0.029 Sum_probs=119.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHH----------------HHHHHhccCcHHHHHHHHHHHhhhcCCC
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVKPN-GITFIG----------------LLNACSHAGLVTEGKSVFDKMVHGLGLV 510 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 510 (638)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|++..+. .+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 344556677777777777777765 343 345555 888999999999999999999873 34
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC--hHHHHHHHHHHhccCCCCcchHHHHH
Q 006627 511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN--PSMGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
.+...+..+..++...|++++|++.|+++ ...| +..++..+...+...|+ .+.+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 46788999999999999999999999998 4555 57888888888766553 45667777777654443 23567789
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 587 NIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.++...|++++|+..|++..+..+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999876554
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=6.9e-09 Score=83.82 Aligned_cols=102 Identities=8% Similarity=0.036 Sum_probs=90.8
Q ss_pred CCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 509 LVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 509 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
+.|+. ..+...+..+.+.|++++|++.|+++ ...| +..+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44543 56778899999999999999999987 4455 688899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 586 SNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
|.+|...|++++|++.|++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999876544
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=1.9e-08 Score=95.94 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=142.1
Q ss_pred cCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc-cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHH
Q 006627 354 AHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE-AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYR 432 (638)
Q Consensus 354 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 432 (638)
.|++++|.+++++..+.. +.. +.. .++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 455667777776654421 110 111 35566665555543 334556666666666
Q ss_pred HHHcCCCC-----C----chhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhccCcHHHHH
Q 006627 433 LFSEAIYR-----D----ICMWNAMMAGYGMHGCGEEALIFFVDMERS----GVKPN--GITFIGLLNACSHAGLVTEGK 497 (638)
Q Consensus 433 ~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~ 497 (638)
.|.+...- + ..+|+.+...|...|++++|+..+++..+. | .|. ..++..+...|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66543311 1 236667777788888888888888876543 2 222 2567788888888 9999999
Q ss_pred HHHHHHhhhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HhhHHHHHHHHhhcCChHHHH
Q 006627 498 SVFDKMVHGLGLVP----KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL---RPN----MIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 498 ~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~A~ 565 (638)
+.|++..+...-.. ...++..+..++.+.|++++|++.++++ .. .++ ...+..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998875321111 1357788899999999999999999887 21 111 235566667777889999999
Q ss_pred HHHHHHhccCCCCcch-----HHHHHHHHHhcCCHHHHHHH
Q 006627 566 IAATQILEIEPQNYGY-----NVLMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 566 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 601 (638)
..+++++ ++|..... ...++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99975433 33455545 67787776663
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.91 E-value=2.4e-08 Score=89.47 Aligned_cols=129 Identities=12% Similarity=-0.088 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL 523 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (638)
.+..+...+...|++++|+..+++. +.|+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 4455667777888888888888776 3667778888888888888888888888888763 344567777888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-C----------------HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 524 GRAGLLDEAHEMIKSM-PLRP-N----------------MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
...|++++|.+.++++ ...| + ...+..+...+...|++++|...++++++++|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888776 2222 1 2667777788888888888888888888888876
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=3.1e-09 Score=88.78 Aligned_cols=97 Identities=8% Similarity=0.040 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344555566666666666666666665 2233 45666666666777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHhhcC
Q 006627 591 VANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~ 609 (638)
..|++++|+..|++..+..
T Consensus 101 ~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 7777777777777665443
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=1.9e-08 Score=94.78 Aligned_cols=136 Identities=6% Similarity=-0.083 Sum_probs=114.7
Q ss_pred CCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhHHHHH
Q 006627 474 KPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVWGALL 552 (638)
Q Consensus 474 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 552 (638)
+.+...+..+...+...|++++|...|+++.+. .+.+...+..+..++.+.|++++|...++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 445567888888999999999999999999873 3446678889999999999999999999998 4567654433333
Q ss_pred -HHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 553 -AASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 553 -~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
..+...++.+.|...++++++.+|+++..+..++.+|...|++++|+..++++.+..+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 34667788999999999999999999999999999999999999999999999876554
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=1.3e-08 Score=96.99 Aligned_cols=197 Identities=8% Similarity=-0.076 Sum_probs=150.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627 388 EAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVD 467 (638)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 467 (638)
..|++++|.+++++..+.. +.. .+...+++++|...|.. ....|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 4578889999998887643 111 01115788999888765 46678889999999999998
Q ss_pred HHHcCC---CC-c-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhc---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006627 468 MERSGV---KP-N-GITFIGLLNACSHAGLVTEGKSVFDKMVHGL---GLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKS 538 (638)
Q Consensus 468 m~~~~~---~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (638)
..+... .+ . ..+|..+..+|...|++++|...+++..+-+ +..+ ....+..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 765311 11 1 3578888899999999999999999887532 1111 13567788889988 999999999988
Q ss_pred C-CCCC-------CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCHHHHHHHHHH
Q 006627 539 M-PLRP-------NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY------GYNVLMSNIYAVANRWNDVAGVRRV 604 (638)
Q Consensus 539 ~-~~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (638)
+ ...| ...++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 1111 146778888999999999999999999999877653 2677788889999999999999998
Q ss_pred Hh
Q 006627 605 MK 606 (638)
Q Consensus 605 ~~ 606 (638)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=1.8e-07 Score=88.49 Aligned_cols=160 Identities=7% Similarity=-0.104 Sum_probs=122.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCcHH----HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHH
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGV-KPNGI----TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGC 518 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 518 (638)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45677888999999999998886421 22221 2334666777888999999999999873122223 236888
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-----C---CCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHH
Q 006627 519 MVDLLGRAGLLDEAHEMIKSMP-----L---RPN-MIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNV 583 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 583 (638)
++.+|...|++++|.++++++- . .|. ..++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988771 1 111 3477888899999999999999999999876543 56899
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhh
Q 006627 584 LMSNIYAVAN-RWNDVAGVRRVMKE 607 (638)
Q Consensus 584 ~l~~~~~~~g-~~~~A~~~~~~~~~ 607 (638)
.+|.+|.+.| ++++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999999988754
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=2.3e-08 Score=104.60 Aligned_cols=146 Identities=10% Similarity=-0.017 Sum_probs=72.0
Q ss_pred CchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHH
Q 006627 390 GALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFV 466 (638)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 466 (638)
|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++... .+...+..+..++...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555666665555443 33455555566666666666666666655442 234455555566666666666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 006627 467 DMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA---GLLDEAHEMIKSM 539 (638)
Q Consensus 467 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 539 (638)
+..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..++... |+.++|.+.++++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 665542 333455555666666666666666666665542 222344555555666665 6666666666554
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=3.6e-08 Score=84.20 Aligned_cols=128 Identities=7% Similarity=-0.052 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS 555 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 555 (638)
..+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566667777788888888888887762 3345667777788888888888888888776 3333 567888888999
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHHhh
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI--YAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 607 (638)
...|++++|...++++++++|+++..+..++.+ +...|++++|+..++...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555555 8889999999999987754
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=5.6e-08 Score=92.03 Aligned_cols=162 Identities=6% Similarity=-0.120 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccCcHHHHHHHHHHHhhhcC--CCCC--hhH
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-----ITFIGLLNACSHAGLVTEGKSVFDKMVHGLG--LVPK--IEH 515 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~~ 515 (638)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+... ..+. ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566777888888888888887765322111 2234455667788899999999998875211 1111 347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC------Ccc
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM----PLRPN-----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ------NYG 580 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 580 (638)
++.++..|...|++++|..+++++ ...|+ ..++..+...|...|++++|...+++++++.++ -+.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888889999999999999998876 11222 257788889999999999999999999886543 156
Q ss_pred hHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 006627 581 YNVLMSNIYAVANRWNDV-AGVRRVMK 606 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A-~~~~~~~~ 606 (638)
.|..+|.+|...|++++| ..++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788999999999999999 77777664
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=1.3e-08 Score=88.19 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=72.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HHhcCCh--
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL-LGRAGLL-- 529 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 529 (638)
...|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34566666777776666653 345566666666667777777777777766652 22344455555555 5556665
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcch
Q 006627 530 DEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGY 581 (638)
Q Consensus 530 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 581 (638)
++|...++++ ...| +...+..+...+...|++++|...++++++++|+++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 6666666655 2233 34555556666666666666666666666666665443
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=1e-07 Score=86.10 Aligned_cols=183 Identities=11% Similarity=-0.008 Sum_probs=129.4
Q ss_pred hhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC-ch---hHH
Q 006627 376 EVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVD---VILKTALVDMYAKCGDVNGAYRLFSEAI--YRD-IC---MWN 446 (638)
Q Consensus 376 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~---~~~ 446 (638)
...+..+...+...|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|...|++.. .|+ .. .+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556677889999999999999999864 222 3567788999999999999999999876 332 22 444
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627 447 AMMAGYGM------------------HGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGL 507 (638)
Q Consensus 447 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 507 (638)
.+..++.. .|++++|+..|+++.+. .|+. ......... ..+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHHH--
Confidence 45555543 57899999999999976 4544 222221110 011111111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc
Q 006627 508 GLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
....+...|.+.|++++|+..++++ ...|+ ...+..+..++...|+.++|...++++....|++..
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1234667888999999999999887 33443 356788889999999999999999999999988654
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=9.4e-09 Score=96.48 Aligned_cols=191 Identities=9% Similarity=-0.091 Sum_probs=117.2
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006627 411 VILKTALVDMYAKCGDVNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNAC 487 (638)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 487 (638)
...+..+...+.+.|++++|...|++.. .| +...|..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444555566666666666666666544 22 45566666777777777777777777776643 33456777777778
Q ss_pred hccCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHH
Q 006627 488 SHAGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEI 566 (638)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 566 (638)
...|++++|...++++.+. .|+. ..+...+....+..+...... .......++......+.. ...|+.++|..
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR--LIAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH--HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH--HHHHHHHHHHH
Confidence 8888888888888777652 1211 011111111111111111111 222222334333333322 23688999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHhhc
Q 006627 567 AATQILEIEPQNYGYNVLMSNIYAVA-NRWNDVAGVRRVMKEI 608 (638)
Q Consensus 567 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 608 (638)
.++++++++|++......+..++.+. +++++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999888888888888777 7899999999988653
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=4.2e-06 Score=84.85 Aligned_cols=369 Identities=11% Similarity=-0.034 Sum_probs=193.8
Q ss_pred hCC-CchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCC-hH
Q 006627 149 RGG-LPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGN-LA 226 (638)
Q Consensus 149 ~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 226 (638)
+.| +++.|..+|+.+.. ..|. ++.+.+..+|...+...+ +...|...+....+.++ .+
T Consensus 6 ~~~~~i~~aR~vyer~l~--~~P~--------------~~~e~~~~iferal~~~p----s~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR--LYMS--------------KDYRSLESLFGRCLKKSY----NLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp ------CCHHHHHHHHHH--HHHT--------------TCHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHHHC----
T ss_pred HcCcchHHHHHHHHHHHH--HCCC--------------CCHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCchHH
Confidence 345 37777777777765 2444 777777777777776432 56677666666655543 23
Q ss_pred HHHHHHhccCC------CCcccHHHHHHHHH----hCCChHHHHHHHHHHHHcCccCCh-HhHHHHHHHhcccCChhhHH
Q 006627 227 YAKQLFNRLNQ------NSVVSWTVMISGYI----RCNEINEGVRLFAEMIEENVFPSE-ITILSLIIECGFVGGLQLGK 295 (638)
Q Consensus 227 ~A~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~ 295 (638)
....+|+.... .+...|...+..+. ..++.+.+.++|+...... ..+. ..|..... +....+...+.
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~-fE~~~~~~~~~ 143 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFEN-FELELNKITGK 143 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHH-HHHHHCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH-HHHHhccccHH
Confidence 33444443321 23345555554433 2345666666776666521 1111 11111111 11111111122
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC----CCchhHHHHHHHHHhcC--C-----HHHHHHHH
Q 006627 296 WLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS----KDVMIWNAVISAYAQAH--C-----IDKAFELF 364 (638)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~a~~~~ 364 (638)
.++.... +.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 1111110 111222222221110 12234444433322111 0 34566778
Q ss_pred HHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH-HHHHHcCC-----
Q 006627 365 IHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGA-YRLFSEAI----- 438 (638)
Q Consensus 365 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~----- 438 (638)
+++.... +.+...|...+.-+.+.|+.+.|..++++.... |.+...+.. |....+.++. ..+.+...
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccc
Confidence 8776542 444566666667777788888888888888887 444333322 2221111111 11221110
Q ss_pred -------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCcHHHHHHHHHHHhhhcCCC
Q 006627 439 -------YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSH-AGLVTEGKSVFDKMVHGLGLV 510 (638)
Q Consensus 439 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 510 (638)
......|...+....+.++.+.|..+|++. ... .++...|...+..-.. .++.+.|..+|+...+.++
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-- 351 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-- 351 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--
Confidence 001245666666666777888899999888 321 2344444433322222 3368889999998887532
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
.++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234456667777788899999999998873 2467777777777788998888888888875
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=4.9e-08 Score=79.70 Aligned_cols=117 Identities=9% Similarity=-0.000 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHH
Q 006627 476 NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLA 553 (638)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 553 (638)
+...+..+...+...|++++|.+.++++.+ ..+.+...+..+..++...|++++|.+.++++ ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345566667777777777777777777764 22335566667777777777777777777766 2233 4677777888
Q ss_pred HHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627 554 ASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR 594 (638)
Q Consensus 554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 594 (638)
.+...|++++|...++++++.+|++...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888999999999988888888888888888877664
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=7.3e-08 Score=83.29 Aligned_cols=156 Identities=8% Similarity=-0.111 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-Hhc
Q 006627 414 KTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNA-CSH 489 (638)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 489 (638)
+..+...+...|++++|...|++... .+...+..+...+...|++++|+..+++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34445556666777777777766652 244566666666777777777777776665442 333322222111 112
Q ss_pred cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HhhHHHHHHHHhhcCChHHHH
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN---MIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~ 565 (638)
.+....|...+++..+. .+.+...+..+..++...|++++|...++++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 12223456666666652 2334566677777777777777777777766 44443 446677777777778877777
Q ss_pred HHHHHHhc
Q 006627 566 IAATQILE 573 (638)
Q Consensus 566 ~~~~~~~~ 573 (638)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=4.2e-06 Score=78.28 Aligned_cols=228 Identities=7% Similarity=-0.038 Sum_probs=167.9
Q ss_pred CCHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCcccHHHHHHHHH----Hhc---
Q 006627 355 HCIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCTEAG--ALEMGKWLHTYIEKQGLEVDVILKTALVDMY----AKC--- 424 (638)
Q Consensus 355 ~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 424 (638)
...++|+.+++.+... .|+.. .++.--..+...+ +++++...++.+.... |-+..+++.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3346788888887664 45443 3444444555566 8888888888888765 55555665554444 444
Q ss_pred CCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc------H
Q 006627 425 GDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGE--EALIFFVDMERSGVKPNGITFIGLLNACSHAGL------V 493 (638)
Q Consensus 425 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~ 493 (638)
+++++++++++.+. ..+..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|..-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 67888888888877 335567777777777788888 9999999999875 4566777776666666666 8
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHhhHHHHHHHHhhcCChHHHHHH
Q 006627 494 TEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDE-AHEMIKSM-PL----RPNMIVWGALLAASKLHKNPSMGEIA 567 (638)
Q Consensus 494 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~A~~~ 567 (638)
+++++.+++++. -.+-|...|+.+...+.+.|+..+ +.++..+. .. ..++..+..+...+.+.|+.++|.+.
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999987 345577888888888888888555 55577766 22 33678888899999999999999999
Q ss_pred HHHHhc-cCCCCcchHHHHHHH
Q 006627 568 ATQILE-IEPQNYGYNVLMSNI 588 (638)
Q Consensus 568 ~~~~~~-~~p~~~~~~~~l~~~ 588 (638)
++.+.+ ++|.....|...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999996 899988888766543
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=2.2e-07 Score=83.13 Aligned_cols=129 Identities=12% Similarity=-0.032 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 006627 414 KTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLV 493 (638)
Q Consensus 414 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 493 (638)
+..+...+...|++++|...|++...++...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45566778889999999999999988888899999999999999999999999998874 55678899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 006627 494 TEGKSVFDKMVHGLGLVPK----------------IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNM 545 (638)
Q Consensus 494 ~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 545 (638)
++|.+.++++.+. .+.+ ...+..+..++...|++++|.+.++++ ...|+.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999873 2222 267888999999999999999999987 566654
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=2.1e-08 Score=83.13 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
..+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33444555556666666666666555 2233 455666666666666666667777777766667666666666777777
Q ss_pred cCCHHHHHHHHHHHhhc
Q 006627 592 ANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 592 ~g~~~~A~~~~~~~~~~ 608 (638)
.|++++|++.|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777776666666543
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=5.1e-08 Score=79.24 Aligned_cols=117 Identities=10% Similarity=-0.005 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA 554 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 554 (638)
...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 356667777777888888888888887763 3345667777788888888888888888776 3334 46778888889
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW 595 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 595 (638)
+...|++++|...++++++.+|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=8.4e-08 Score=77.17 Aligned_cols=115 Identities=19% Similarity=0.112 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHhhHHHHHHH
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-RPNMIVWGALLAA 554 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 554 (638)
...+..+...+...|++++|.+.++++.+. .+.+...+..+..++.+.|++++|..+++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 355666677777777777777777777653 2344566677777777778888887777776 22 3356777788888
Q ss_pred HhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 006627 555 SKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN 593 (638)
Q Consensus 555 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 593 (638)
+...|++++|...++++++.+|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999999998888888888876654
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=1.5e-06 Score=88.13 Aligned_cols=352 Identities=10% Similarity=-0.014 Sum_probs=203.2
Q ss_pred CChHHHHHHHhccCC--CCcccHHHHHHHHHhCCC-hHHHHHHHHHHHHc-CccC-ChHhHHHHHHHhcc----cCChhh
Q 006627 223 GNLAYAKQLFNRLNQ--NSVVSWTVMISGYIRCNE-INEGVRLFAEMIEE-NVFP-SEITILSLIIECGF----VGGLQL 293 (638)
Q Consensus 223 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~ 293 (638)
|+++.+..+|++... |++..|...+....+.+. .+....+|+..... |..| +...|...+.-+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888888775 777777777776666553 34556667666553 4333 55566666655432 356677
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC
Q 006627 294 GKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVR 373 (638)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 373 (638)
+..+|+..+......-..+|...... ........+..++.+ . .+.+..|..+++++...--.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~---------------~--~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD---------------T--LPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH---------------H--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH---------------H--hHHHHHHHHHHHHHHHHHhh
Confidence 77777777752111111122211111 111111222222211 1 12234444444444321001
Q ss_pred CChhhHHHHHHHHhcc--C-----chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-C-Cchh
Q 006627 374 PNEVTMVGLLSLCTEA--G-----ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-R-DICM 444 (638)
Q Consensus 374 p~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~ 444 (638)
.+...|...+.--... + ..+.+..+++++.... +.+..++...+..+.+.|+++.|..++++... | +...
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l 248 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFL 248 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHH
Confidence 1223444444332221 1 1345677888888764 66678888888888999999999999987553 3 2222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSG---------VKP---NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 512 (638)
|. .|......++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+++ +. . ..+
T Consensus 249 ~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~ 318 (493)
T 2uy1_A 249 SL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVG 318 (493)
T ss_dssp HH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCC
T ss_pred HH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCC
Confidence 22 22222222222 23332211 011 1244666677777788899999999999 42 2 234
Q ss_pred hhHHHHHHHHHHhc-CChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRA-GLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 513 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
...|...+..-.+. ++.+.|..+|+.. ..-| ++..|...+......|+.+.|+.+++++ +.....|......-
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE 394 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44554333333333 4699999999887 2123 3556666777778899999999999998 34567788888888
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 006627 590 AVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~ 607 (638)
...|+.+.+..+++++.+
T Consensus 395 ~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888999999998888864
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=5.7e-08 Score=93.71 Aligned_cols=126 Identities=10% Similarity=-0.041 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----------------IEHYGCMVDLLGRAGLLDEAHEMIKSM-P 540 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 540 (638)
..+..+...+.+.|++++|...|+++.+. .|+ ...|..+..++.+.|++++|+..++++ .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555666666666666665542 121 367788888888899999999988887 3
Q ss_pred CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHh
Q 006627 541 LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA-GVRRVMK 606 (638)
Q Consensus 541 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 606 (638)
..| +...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++|. ..+++|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 57888899999999999999999999999999999999999999999999999994 4566553
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=3.7e-08 Score=78.85 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 592 (638)
.+..+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888899999999999887 4445 6788889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 006627 593 NRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 593 g~~~~A~~~~~~~~~~~~ 610 (638)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999998876544
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=1.2e-07 Score=78.93 Aligned_cols=105 Identities=7% Similarity=-0.020 Sum_probs=90.0
Q ss_pred CCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHH
Q 006627 473 VKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWG 549 (638)
Q Consensus 473 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 549 (638)
+.|+. ..+..+...+.+.|++++|...|+++.+ -.+.+...|..+..++...|++++|++.|+++ ...| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34544 5788888889999999999999999987 33456788889999999999999999999988 4455 578889
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 550 ALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999864
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=7e-08 Score=78.04 Aligned_cols=94 Identities=7% Similarity=-0.068 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA 592 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 592 (638)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444555555566666666665554 2223 3556666666666667777777777777777777666677777777777
Q ss_pred CCHHHHHHHHHHHhhc
Q 006627 593 NRWNDVAGVRRVMKEI 608 (638)
Q Consensus 593 g~~~~A~~~~~~~~~~ 608 (638)
|++++|...+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 7777777766666543
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=6.4e-08 Score=76.16 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ--NYGYNVLMSNI 588 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 588 (638)
...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345566677777778888888877776 2233 5677888888889999999999999999999999 99999999999
Q ss_pred HHhc-CCHHHHHHHHHHHhhcCCcC
Q 006627 589 YAVA-NRWNDVAGVRRVMKEIRVKK 612 (638)
Q Consensus 589 ~~~~-g~~~~A~~~~~~~~~~~~~~ 612 (638)
|... |++++|.+.+++..+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999887766544
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=5.4e-08 Score=81.12 Aligned_cols=110 Identities=9% Similarity=-0.100 Sum_probs=89.0
Q ss_pred CCc-HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHH
Q 006627 474 KPN-GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGA 550 (638)
Q Consensus 474 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 550 (638)
.|+ ...+..+...+...|++++|...|+++.. ..+.+...|..+..++...|++++|++.++++ ...| ++..+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 443 35677778888889999999999998876 33446777888888999999999999999887 3444 5678888
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
+..++...|++++|+..++++++++|+++......
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 89999999999999999999999999987764443
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=1.4e-08 Score=89.87 Aligned_cols=129 Identities=8% Similarity=-0.080 Sum_probs=90.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCC--------------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVP--------------KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP 543 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 543 (638)
.+..+...+...|++++|...|++..+...-.| ....+..+..++.+.|++++|+..++++ ...|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444555555666666666665554211111 0256777888888889999998888877 3344
Q ss_pred -CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 006627 544 -NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVA-GVRRVMKE 607 (638)
Q Consensus 544 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 607 (638)
+...+..+..++...|++++|+..++++++++|+++.++..++.++...|+.+++. ..+..|-.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788889999999999999999999999999999999999999999999998888 45666543
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=9.1e-07 Score=78.93 Aligned_cols=175 Identities=12% Similarity=-0.109 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC-CCchhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 006627 395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY-RDICMWNAMMAGYGMHG----CGEEALIFFVDME 469 (638)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 469 (638)
|.+.|+...+.| ++..+..+...|...+++++|..+|++... .++..+..|...|.. + ++++|+..|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444444432 344455555566666666666666665442 244555556666665 5 7888888888887
Q ss_pred HcCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHhC-
Q 006627 470 RSGVKPNGITFIGLLNACSH----AGLVTEGKSVFDKMVHGLGLV-PKIEHYGCMVDLLGR----AGLLDEAHEMIKSM- 539 (638)
Q Consensus 470 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 539 (638)
+.| +...+..+...|.. .+++++|.++|++..+. +.. ..+..+..|..+|.. .+++++|.++|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 654 45566777777776 78899999999888752 221 126677788888877 78899999999887
Q ss_pred CCCCCHhhHHHHHHHHhhc-C-----ChHHHHHHHHHHhccCCC
Q 006627 540 PLRPNMIVWGALLAASKLH-K-----NPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 540 ~~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p~ 577 (638)
...+++..+..+...|... | +.++|...++++.+..+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334566777777777643 3 889999999999887543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1.7e-07 Score=85.48 Aligned_cols=192 Identities=9% Similarity=-0.116 Sum_probs=95.7
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcccHHHHH-------HHHHHhcCCHHHHHHHHHcCCCC---------C----------
Q 006627 388 EAGALEMGKWLHTYIEKQGLEVDVILKTAL-------VDMYAKCGDVNGAYRLFSEAIYR---------D---------- 441 (638)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~---------~---------- 441 (638)
..++...|.+.|.++.+.. |-....|..+ ...+.+.++..++...+..-..- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677888888888887765 4455556555 34444444444444444433211 1
Q ss_pred -----chhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC--hh
Q 006627 442 -----ICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK--IE 514 (638)
Q Consensus 442 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~ 514 (638)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 011223444555556666666666555443 243333334444455556666666655544321 0 111 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSMP---LRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
.+..+..++.+.|++++|+..|++.. ..|. ...+.....++.+.|+.++|...|+++.+.+|+ +.+...|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 34445555555555555555555551 1122 234444445555555555555555555555555 4444333
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=1.2e-07 Score=80.74 Aligned_cols=111 Identities=11% Similarity=-0.045 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHH
Q 006627 476 NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLA 553 (638)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 553 (638)
+...+..+...+...|++++|.+.|++..+. .+.+...+..+..++.+.|++++|+..++++ ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888889999999999999999999873 3446788889999999999999999999988 4445 5788899999
Q ss_pred HHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 554 ASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
++...|++++|+..++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998866655433
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.9e-07 Score=80.70 Aligned_cols=124 Identities=6% Similarity=0.054 Sum_probs=101.3
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHH-HhhcCCh--
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAA-SKLHKNP-- 561 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~-- 561 (638)
+...|++++|...+++..+. .+.+...+..+..++...|++++|...++++ ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678899999999998863 3456788889999999999999999999987 3334 56777788888 7788998
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcC
Q 006627 562 SMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKK 612 (638)
Q Consensus 562 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 612 (638)
++|...++++++.+|+++..+..++.+|...|++++|...++++.+..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999987766543
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=8.8e-08 Score=77.44 Aligned_cols=94 Identities=11% Similarity=-0.028 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcc-------hHHHH
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYG-------YNVLM 585 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l 585 (638)
.+..++..+.+.|++++|++.|+++ ...| +..+|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777777777777777766 3344 4667777778888888888888888888888776543 56667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc
Q 006627 586 SNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
|.+|...|++++|++.|++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 77888888888888888877553
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=2.4e-07 Score=76.05 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 344455555555555555555555544 2222 34555556666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHhhc
Q 006627 591 VANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~ 608 (638)
..|++++|+..+++..+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 666666666666666543
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=3.8e-07 Score=83.20 Aligned_cols=190 Identities=10% Similarity=-0.026 Sum_probs=121.9
Q ss_pred hcCCHHHHHHHHHHHHHcCcCCC-hhhHHHH-------HHHHhccCchHHHHHHHHHHHHhCCCCc--------------
Q 006627 353 QAHCIDKAFELFIHMKVSKVRPN-EVTMVGL-------LSLCTEAGALEMGKWLHTYIEKQGLEVD-------------- 410 (638)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 410 (638)
..++...|.+.|.+.... .|+ ...|..+ ...+...++...+...++...+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 578888999999888765 343 3455555 2333333334433333333222 2221
Q ss_pred --------ccHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HH
Q 006627 411 --------VILKTALVDMYAKCGDVNGAYRLFSEAIY--RDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPN--GI 478 (638)
Q Consensus 411 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~ 478 (638)
....-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12233456677888999999999988763 322255555667788889999999887554321 121 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhhH
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPNMIVW 548 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 548 (638)
.+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+...+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~ 244 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA 244 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH
Confidence 6777788888899999999999988752 22253 345667778888889999999999887 445653333
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=5.3e-07 Score=71.47 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS 555 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 555 (638)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555556666666666655542 2223444555555555555555555555554 2222 345555566666
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
...|++++|...++++++.+|+++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666666555555544
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=3.2e-07 Score=74.77 Aligned_cols=100 Identities=7% Similarity=-0.026 Sum_probs=90.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++.+|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35577888999999999999999999987 4455 678888999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCC
Q 006627 589 YAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
|...|++++|.+.+++..+..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999876543
No 147
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=4.3e-06 Score=79.01 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=29.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
+.++.++..|+.+|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 567788999999999999999999999998643
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=3.2e-07 Score=72.76 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
+...+..++..+...|++++|...++++ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778888999999999999999988 3344 6788888999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCC
Q 006627 590 AVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...|++++|.+.+++..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999998876544
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=2.8e-07 Score=76.21 Aligned_cols=109 Identities=8% Similarity=-0.090 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS 555 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 555 (638)
..+..+...+.+.|++++|...|+++.. ..+.+...|..+..++.+.|++++|+..++++ ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4566667777888888888888888876 23446677778888888888888888888877 3344 567788888899
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
...|++++|...++++++++|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999988776655444
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.5e-07 Score=73.86 Aligned_cols=112 Identities=8% Similarity=-0.093 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAAS 555 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 555 (638)
..+..+...+.+.|++++|...|++..+. .+.+...+..+..++.+.|++++|+..++++ ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45666667777788888888888887762 3345677777888888888888888888776 3344 477888888899
Q ss_pred hhcCChHHHHHHHHHHhccC------CCCcchHHHHHHHHHh
Q 006627 556 KLHKNPSMGEIAATQILEIE------PQNYGYNVLMSNIYAV 591 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 591 (638)
...|++++|...++++++++ |+++.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999 8888888777766543
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=3.5e-06 Score=79.51 Aligned_cols=158 Identities=9% Similarity=-0.064 Sum_probs=114.8
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCC---c------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHH
Q 006627 417 LVDMYAKCGDVNGAYRLFSEAIYRD---I------CMWNAMMAGYGMHGCGEEALIFFVDMERSGVK-PN----GITFIG 482 (638)
Q Consensus 417 l~~~~~~~~~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 482 (638)
.+..+...|++++|..++++..... . ..+..+...+...+++++|+..+++..+.... ++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888887755321 1 12334556666777999999999998874222 22 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HhhHH
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGL----GLVPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM-------PLRPN-MIVWG 549 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 549 (638)
+..+|...|++++|..+++++.+.. +..+. ..++..++.+|.+.|++++|.++++++ ...+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999987421 11122 246788889999999999999998876 11222 56788
Q ss_pred HHHHHHhhcCC-hHHHHHHHHHHhcc
Q 006627 550 ALLAASKLHKN-PSMGEIAATQILEI 574 (638)
Q Consensus 550 ~l~~~~~~~~~-~~~A~~~~~~~~~~ 574 (638)
.+...+...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88889999995 59999999999874
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=5.4e-07 Score=74.97 Aligned_cols=110 Identities=10% Similarity=-0.036 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHH
Q 006627 476 NGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWG 549 (638)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 549 (638)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..++...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555555566666666666666666653 2333 344555555555555555555555544 2222 344455
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
.+...+...|++++|...++++++++|+++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555555555555555555555555555555544444443
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=1.7e-06 Score=81.80 Aligned_cols=162 Identities=9% Similarity=-0.061 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCC--C-Cc------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HH
Q 006627 413 LKTALVDMYAKCGDVNGAYRLFSEAIY--R-DI------CMWNAMMAGYGMHGCGEEALIFFVDMERSGV---KPN--GI 478 (638)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~ 478 (638)
.+...+..+...|++++|.+.+.+... + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334455667777788888777765431 1 11 1233455566777889999998888775321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhh---hcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-CH
Q 006627 479 TFIGLLNACSHAGLVTEGKSVFDKMVH---GLGLVPK--IEHYGCMVDLLGRAGLLDEAHEMIKSM-PL------RP-NM 545 (638)
Q Consensus 479 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 545 (638)
++..+...|...|++++|..+++++.+ ..+..+. ..++..++.+|...|++++|.+++++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888888999999999999988873 2121121 257788888999999999999998876 11 11 15
Q ss_pred hhHHHHHHHHhhcCChHHH-HHHHHHHhcc
Q 006627 546 IVWGALLAASKLHKNPSMG-EIAATQILEI 574 (638)
Q Consensus 546 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 574 (638)
.++..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7778888763
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=5e-07 Score=72.46 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
...+..+...+...|++++|.+.++++ ... .+..++..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788889999999999999999988 333 357788889999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCC
Q 006627 591 VANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~~ 610 (638)
..|++++|..+++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999876543
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=9.4e-07 Score=78.19 Aligned_cols=61 Identities=3% Similarity=-0.151 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhccCCC--C----cchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEIEPQ--N----YGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+..+...+...|++++|...+++++++.+. + ...+..++.++...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444555555666666666666666553221 1 12345667777777777777777666543
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=6.7e-07 Score=76.10 Aligned_cols=96 Identities=9% Similarity=-0.042 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
...+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555566666666666666555 2233 44555555566666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHhhc
Q 006627 591 VANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~ 608 (638)
..|++++|+..|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666655443
No 157
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.52 E-value=4e-07 Score=73.78 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=31.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEIEPQN---YGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+..+...+...|++++|...++++++..|++ +.++..++.+|...|++++|...++++.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444555555555555555555555554 34455555555555555555555555443
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.50 E-value=3.8e-07 Score=74.85 Aligned_cols=61 Identities=10% Similarity=-0.104 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEI-------EPQNYGYN----VLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.|..+..++...|++++|+..+++++++ +|+++..| ...|.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6677777777777888887777777777 88888888 8888888888898888888888765
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=8.3e-07 Score=71.88 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4566778888999999999999999987 3334 6788888999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCC
Q 006627 590 AVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...|++++|.+.+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999876544
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.6e-06 Score=72.03 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=80.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 511 PKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
.+...+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++|+..++++++.+|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35567777788888888888888888877 55666 56777777888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 586 SNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+.+|...|++++|...+++..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888888765443
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=1.1e-06 Score=88.51 Aligned_cols=95 Identities=16% Similarity=0.032 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
...|..+..++.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467778888888999999999998887 3344 57888899999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHH-HHHHHhh
Q 006627 591 VANRWNDVAG-VRRVMKE 607 (638)
Q Consensus 591 ~~g~~~~A~~-~~~~~~~ 607 (638)
..|++++|.+ .+++|-.
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998876 4565543
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=9.1e-07 Score=72.52 Aligned_cols=115 Identities=6% Similarity=-0.111 Sum_probs=86.2
Q ss_pred CcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHH
Q 006627 475 PNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALL 552 (638)
Q Consensus 475 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 552 (638)
.+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...++++ ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45567777777788888888888888887763 3345667777888888888888888888776 3334 567888888
Q ss_pred HHHhhcCChHHHHHHHHHHhccCCC-----CcchHHHHHHHHHh
Q 006627 553 AASKLHKNPSMGEIAATQILEIEPQ-----NYGYNVLMSNIYAV 591 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~ 591 (638)
..+...|++++|+..+++++++.|+ +..+...+..+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998887 55555555555433
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.45 E-value=1.3e-07 Score=75.13 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=46.1
Q ss_pred CChHHHHHHHHhC-CC---CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 006627 527 GLLDEAHEMIKSM-PL---RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGV 601 (638)
Q Consensus 527 g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 601 (638)
|++++|+..|+++ .. .| +...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555444 22 13 2345555556666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhc
Q 006627 602 RRVMKEI 608 (638)
Q Consensus 602 ~~~~~~~ 608 (638)
+++..+.
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655443
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=2.3e-06 Score=72.77 Aligned_cols=127 Identities=10% Similarity=-0.080 Sum_probs=88.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006627 444 MWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL 523 (638)
Q Consensus 444 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (638)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45556667777788888888888777653 445677777777888888888888888887763 344566777778888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHhhHH--HHHHHHhhcCChHHHHHHHHHHhc
Q 006627 524 GRAGLLDEAHEMIKSM-PLRP-NMIVWG--ALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 524 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
...|++++|.+.++++ ...| +...+. ..+..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888776 3333 334443 333336667888888888777654
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=0.00014 Score=68.66 Aligned_cols=232 Identities=13% Similarity=0.033 Sum_probs=162.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCcCCChh-hHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc-C-C
Q 006627 351 YAQAHCIDKAFELFIHMKVSKVRPNEV-TMVGLLSLCTEAG-ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKC-G-D 426 (638)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 426 (638)
....+..++|+++++++... .|+.. .++.--..+...| .++++..+++.+.... +-+..+++.-.-.+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 34445567899999888765 45443 4554444555566 5889999999988876 66677777776666666 6 8
Q ss_pred HHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc---
Q 006627 427 VNGAYRLFSEAIYRD---ICMWNAMMAGYGMHGCGE--------EALIFFVDMERSGVKPNGITFIGLLNACSHAGL--- 492 (638)
Q Consensus 427 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 492 (638)
+++++++++.+...+ ..+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 899999999888554 456655555555555555 8999999999875 4567778887777777765
Q ss_pred ----HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC------
Q 006627 493 ----VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLL--------------------DEAHEMIKSM-PL------ 541 (638)
Q Consensus 493 ----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------ 541 (638)
++++++.+++++. -.+-|...|+.+-..+.+.|+. .+..++..++ ..
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 6889999998886 3445667777777777766654 3444444444 21
Q ss_pred -CCCHhhHHHHHHHHhhcCChHHHHHHHHHHh-ccCCCCcchHHHHHHH
Q 006627 542 -RPNMIVWGALLAASKLHKNPSMGEIAATQIL-EIEPQNYGYNVLMSNI 588 (638)
Q Consensus 542 -~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 588 (638)
.+++..+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 2567788888899999999999999999997 7899876666655543
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=2.6e-05 Score=73.37 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=55.5
Q ss_pred HhcCCHH-HHHHHHHHHHHcCcCCChhh-HHHHHHHHhccCc----------hHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 006627 352 AQAHCID-KAFELFIHMKVSKVRPNEVT-MVGLLSLCTEAGA----------LEMGKWLHTYIEKQGLEVDVILKTALVD 419 (638)
Q Consensus 352 ~~~~~~~-~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (638)
.+.|.++ +|+.++..+... .|+..| ++.--..+...+. ++.+..+++.+.... |-+..+++.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455544 678888877653 444433 3321112211111 345555555555544 444455554444
Q ss_pred HHHhcCC--HHHHHHHHHcCCC---CCchhHHHHHHHHHhcCC-hHHHHHHHHHHHHc
Q 006627 420 MYAKCGD--VNGAYRLFSEAIY---RDICMWNAMMAGYGMHGC-GEEALIFFVDMERS 471 (638)
Q Consensus 420 ~~~~~~~--~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~ 471 (638)
++.+.++ +++++.+++.+.. .|..+|+.-...+...|. ++++++.++++.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 4444442 4555555555442 233444444444444444 35555555555554
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=5.8e-07 Score=86.63 Aligned_cols=151 Identities=7% Similarity=-0.149 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006627 443 CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDL 522 (638)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (638)
..+..+...+...|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 34555566666677777777777776654 344331 223333443332211 1367788889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH-HHhcCCHHHHH
Q 006627 523 LGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI-YAVANRWNDVA 599 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 599 (638)
+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4445 578889999999999999999999999999999999999999988 44557788888
Q ss_pred HHHHHHhhcCCcCC
Q 006627 600 GVRRVMKEIRVKKE 613 (638)
Q Consensus 600 ~~~~~~~~~~~~~~ 613 (638)
..|++|.+..+...
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 89998876555443
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=7.9e-06 Score=72.11 Aligned_cols=27 Identities=15% Similarity=0.040 Sum_probs=15.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627 548 WGALLAASKLHKNPSMGEIAATQILEI 574 (638)
Q Consensus 548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 574 (638)
+..+...+...|++++|...+++++++
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344455555566666666666665553
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=8.5e-07 Score=75.25 Aligned_cols=113 Identities=15% Similarity=-0.039 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC----------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLG----------------LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM- 539 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 539 (638)
...+......+.+.|++++|...|++.+.... .+.+...|..+..++.+.|++++|+..++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34567777788888888888888888775200 0111244555566666666666666666555
Q ss_pred CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc-chHHHHHHHH
Q 006627 540 PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY-GYNVLMSNIY 589 (638)
Q Consensus 540 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 589 (638)
...| +...|..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 2233 355556666666666666666666666666666655 3444444443
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=2.6e-06 Score=79.68 Aligned_cols=188 Identities=9% Similarity=-0.092 Sum_probs=111.0
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCchhHHHHHHHHH
Q 006627 377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIY---RDICMWNAMMAGYG 453 (638)
Q Consensus 377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 453 (638)
..+..+...+...|+++.|...++...+.. +.+...+..+..+|.+.|++++|...+++... .+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455556666677777777777666654 44666777777777788888888887777653 24566777777888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627 454 MHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 454 ~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 532 (638)
..|++++|+..+++..+.. |+. ..+...+....+ ...+... ...... ..+++......+... ..|+.++|
T Consensus 84 ~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHH--HHHHHHHH
Confidence 8888888888888777642 321 111111111111 1111111 222221 444555554444333 26888889
Q ss_pred HHHHHhC-CCCCCHhhH-HHHHHHHhhc-CChHHHHHHHHHHhcc
Q 006627 533 HEMIKSM-PLRPNMIVW-GALLAASKLH-KNPSMGEIAATQILEI 574 (638)
Q Consensus 533 ~~~~~~~-~~~p~~~~~-~~l~~~~~~~-~~~~~A~~~~~~~~~~ 574 (638)
++.++++ ...|+.... ..+...+... +.+++|..+|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888777 556654333 3333334443 5678888888888763
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=6.4e-07 Score=90.71 Aligned_cols=119 Identities=8% Similarity=-0.044 Sum_probs=94.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCC
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKN 560 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 560 (638)
+...+.+.|++++|.+.++++.+. .+.+...+..+..++.+.|++++|++.++++ ...| +..++..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334566778888888888888763 3334677888888888888888888888877 4445 57788889999999999
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCHHHHHHHHH
Q 006627 561 PSMGEIAATQILEIEPQNYGYNVLMSNI--YAVANRWNDVAGVRR 603 (638)
Q Consensus 561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 603 (638)
+++|+..++++++++|+++..+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999988 899999999999988
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=2.8e-07 Score=81.32 Aligned_cols=121 Identities=11% Similarity=-0.060 Sum_probs=91.3
Q ss_pred hccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH----------------hhHH
Q 006627 488 SHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NM----------------IVWG 549 (638)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~----------------~~~~ 549 (638)
...|+++++.+.|+.... ........+..+...+.+.|++++|.+.++++ ...| +. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 344555555555543322 11113456777888999999999999999987 2222 22 6788
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.+..++...|++++|+..++++++++|+++.++..++.+|...|++++|++.|++..+..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8888999999999999999999999999999999999999999999999999998876543
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=1.3e-06 Score=70.74 Aligned_cols=110 Identities=7% Similarity=-0.084 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HhhH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PL----RPN----MIVW 548 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 548 (638)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...++++ .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666666777777777777777777652 2334556666666666677777777666665 11 111 4455
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 006627 549 GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYA 590 (638)
Q Consensus 549 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 590 (638)
..+...+...|++++|...++++++..| ++.....++.+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 5666666666666666666666666666 6555555555443
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=8.2e-05 Score=69.99 Aligned_cols=95 Identities=7% Similarity=-0.088 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC-HHHHHHH
Q 006627 357 IDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG--ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGD-VNGAYRL 433 (638)
Q Consensus 357 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 433 (638)
+++++..++.+.... +-+..+|+.-...+.+.+ .++.+..+++.+.+.. +-+...++.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 455666666655432 223344444333444444 3566666666666655 4455555555555555565 4666666
Q ss_pred HHcCC---CCCchhHHHHHHHHH
Q 006627 434 FSEAI---YRDICMWNAMMAGYG 453 (638)
Q Consensus 434 ~~~~~---~~~~~~~~~l~~~~~ 453 (638)
++++. ..|...|+.....+.
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Confidence 66555 224445554444443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=8.4e-07 Score=71.86 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC-------cchHHHHH
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-PLR-PNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN-------YGYNVLMS 586 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~ 586 (638)
+..++..+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|++ +..+..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344444445555555555555444 111 233444444444555555555555555555544443 44445555
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 006627 587 NIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+|...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555554443
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.8e-06 Score=69.65 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=54.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C----HhhHHH
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP----N----MIVWGA 550 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~ 550 (638)
+..+...+.+.|++++|++.|+++++. .+.+...|..+..+|.+.|++++|++.+++. ...| + ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344445555555555555555555431 1223444555555555555555555555544 1111 1 134556
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
+..++...|++++|+..++++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 667777788888888888888887775
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=3.4e-06 Score=65.95 Aligned_cols=100 Identities=17% Similarity=0.037 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHhhHHHHHH
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP---NMIVWGALLA 553 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 553 (638)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.++++ ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455555566666666666666666552 2334455666666666667777777666665 2233 4666777777
Q ss_pred HHhhc-CChHHHHHHHHHHhccCCCCc
Q 006627 554 ASKLH-KNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 554 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 579 (638)
.+... |++++|.+.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888888888754
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=4.4e-06 Score=67.45 Aligned_cols=105 Identities=8% Similarity=-0.021 Sum_probs=70.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhhHHHHHH
Q 006627 482 GLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI---EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----MIVWGALLA 553 (638)
Q Consensus 482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 553 (638)
.+...+...|++++|...++++.+.. +.+. ..+..+..++.+.|++++|...++++ ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455566677777777777666531 1222 35556666777777777777777665 22332 456777788
Q ss_pred HHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 554 ASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
.+...|++++|...++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88889999999999999999999877665554444
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=2.3e-06 Score=83.40 Aligned_cols=90 Identities=9% Similarity=-0.053 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 006627 512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIY 589 (638)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 589 (638)
+...|..+..++.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++..++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467778888899999999999999887 5556 5788888999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHH
Q 006627 590 AVANRWNDVAGV 601 (638)
Q Consensus 590 ~~~g~~~~A~~~ 601 (638)
...++++++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=2.4e-06 Score=68.14 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=66.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhh
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKL 557 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 557 (638)
+..+...+.+.|++++|...++++.+. .+.+...+..+..++...|++++|+..++++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555666777777777777777652 3335566677777777777777777777776 3444 46677788888888
Q ss_pred cCChHHHHHHHHHHhccCCCCc
Q 006627 558 HKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8889999999999999888764
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=1.3e-06 Score=74.07 Aligned_cols=93 Identities=10% Similarity=-0.019 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC------------------CC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 517 GCMVDLLGRAGLLDEAHEMIKSM-PL------------------RP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~-~~------------------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
...+..+.+.|++++|+..|++. .. .| +...|..+..++...|++++|+..++++++++|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34455666677777777766655 11 11 124556666666677777777777777777777
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 577 QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 577 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+++.+|..+|.+|...|++++|...|++..+..
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 777777777777777777777777777665443
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=1.5e-05 Score=82.24 Aligned_cols=168 Identities=10% Similarity=-0.042 Sum_probs=129.0
Q ss_pred HHHHHHHHHcCC--CC-CchhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC--
Q 006627 427 VNGAYRLFSEAI--YR-DICMWNAMMAGYGMHGC----------GEEALIFFVDMERSGVKPNGITFIGLLNACSHAG-- 491 (638)
Q Consensus 427 ~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-- 491 (638)
.++|++.++++. .| +...|+.--.++...|+ +++++..++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 345566666555 22 33455554455555555 788999999998874 456678888888888888
Q ss_pred cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc----------
Q 006627 492 LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG-LLDEAHEMIKSM-PLRP-NMIVWGALLAASKLH---------- 558 (638)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 558 (638)
+++++++.++++.+ --+-+...|+.-..++.+.| .+++++++++++ ...| +..+|......+...
T Consensus 124 ~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 67999999999987 34556788888888888888 899999999888 5555 577887777666552
Q ss_pred ----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHH
Q 006627 559 ----KNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWND 597 (638)
Q Consensus 559 ----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 597 (638)
+.++++.+.++++++.+|++..+|..+++++.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999998655
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=1.7e-06 Score=73.13 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=77.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----Hhh
Q 006627 480 FIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM----PLRPN----MIV 547 (638)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 547 (638)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444445555555555555544431100011 124445555555566666666655554 00111 345
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 548 WGALLAASKLHKNPSMGEIAATQILEIEPQ------NYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 548 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+..+...+...|++++|...+++++++.+. ....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677777888888888888888765322 245678899999999999999999988754
No 184
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=2.2e-06 Score=82.48 Aligned_cols=118 Identities=8% Similarity=-0.071 Sum_probs=97.2
Q ss_pred cCcHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HhhHHHH
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVP-KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN----------------MIVWGAL 551 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l 551 (638)
.+++++|...++..... .| +...+..+...+.+.|++++|+..|+++ ...|+ ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 34555555555444321 23 3567888899999999999999999988 33443 4788899
Q ss_pred HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 552 LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 552 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
...+...|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+..+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999876544
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=8.6e-06 Score=81.81 Aligned_cols=163 Identities=8% Similarity=-0.091 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcH----HHHHHHHHHHhccCcHHHHHHHHHHHhhh---cCCCCC-hhH
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSG-VKPNG----ITFIGLLNACSHAGLVTEGKSVFDKMVHG---LGLVPK-IEH 515 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~ 515 (638)
+..+...|...|++++|.+++.++...- ..++. .+...+...+...|+++.|.++++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777777665421 11222 12333344455678889998888876542 122222 356
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC---C----cc
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-----P--LRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQ---N----YG 580 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~----~~ 580 (638)
+..++..+...|++++|..+++++ + ..| ...++..++..|...|++++|...++++....|. . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888999999999999998876 1 122 2457778888999999999999999999875432 1 24
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 581 YNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+..++.++...|+|++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567788889999999999998877654
No 186
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.22 E-value=6.1e-06 Score=61.59 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=63.6
Q ss_pred CCCHhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCCC
Q 006627 542 RPNMIVWGALLAASKLHKN---PSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEPG 615 (638)
Q Consensus 542 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 615 (638)
++++..+..+..++...++ .++|...++++++++|+++.+...+|..+...|+|++|+.+|+++.+..+. .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4467778888877765544 799999999999999999999999999999999999999999999988776 554
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=2.5e-06 Score=70.05 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=75.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhhhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-------C
Q 006627 481 IGLLNACSHAGLVTEGKSVFDKMVHGLGLVP-----K-----IEHYGCMVDLLGRAGLLDEAHEMIKSM-PL-------R 542 (638)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~ 542 (638)
......+.+.|++++|...|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3344445556666666666666654211100 1 126677777777777777777777665 34 7
Q ss_pred CC-HhhH----HHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 006627 543 PN-MIVW----GALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNI 588 (638)
Q Consensus 543 p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 588 (638)
|+ ...| .....++...|++++|+..|+++++++|++....-.+..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 75 5678 8889999999999999999999999999988877666544
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.19 E-value=5.9e-06 Score=63.18 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=58.3
Q ss_pred CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
+...+..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788888899999999999999999999999999999999999999999999999999887643
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=1.2e-06 Score=69.53 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=63.0
Q ss_pred cCcHHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHH
Q 006627 490 AGLVTEGKSVFDKMVHGLG--LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGE 565 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~ 565 (638)
.|++++|+..|+++.+. + .+.+...+..+..++...|++++|++.++++ ...| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46667777777776642 1 1223455666777777777777777777776 3334 4677777888888888888899
Q ss_pred HHHHHHhccCCCCcchHHH
Q 006627 566 IAATQILEIEPQNYGYNVL 584 (638)
Q Consensus 566 ~~~~~~~~~~p~~~~~~~~ 584 (638)
..++++++..|+++.....
T Consensus 82 ~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 9999888888887665443
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=6e-07 Score=70.41 Aligned_cols=93 Identities=12% Similarity=-0.037 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC------cchHH
Q 006627 512 KIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN------YGYNV 583 (638)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 583 (638)
+...+..+...+.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666777777888888888888776 3334 57778888889999999999999999999999998 67778
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 006627 584 LMSNIYAVANRWNDVAGVRRV 604 (638)
Q Consensus 584 ~l~~~~~~~g~~~~A~~~~~~ 604 (638)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777665553
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=8.8e-06 Score=82.37 Aligned_cols=117 Identities=13% Similarity=0.031 Sum_probs=85.1
Q ss_pred HHHHHhcCCHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 006627 418 VDMYAKCGDVNGAYRLFSEAI---YRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVT 494 (638)
Q Consensus 418 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 494 (638)
...+.+.|++++|.+.+++.. ..+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 345667888999998888765 3356788888888889999999999998888763 445678888888888899999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 006627 495 EGKSVFDKMVHGLGLVPKIEHYGCMVDL--LGRAGLLDEAHEMIK 537 (638)
Q Consensus 495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 537 (638)
+|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998887642 2233455555555 778888888888887
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=8.1e-06 Score=78.60 Aligned_cols=153 Identities=8% Similarity=-0.044 Sum_probs=81.3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 006627 411 VILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHA 490 (638)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 490 (638)
...+..+...+.+.|++++|...|++....+.... .+...++..++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567778888999999999999987653222111 1122233333332221 13677888889999
Q ss_pred CcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhhHHHHHHH-HhhcCChHHHHHH
Q 006627 491 GLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN-MIVWGALLAA-SKLHKNPSMGEIA 567 (638)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~A~~~ 567 (638)
|++++|...++++++. .+.+...+..+..+|...|++++|...|+++ ...|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999863 3446788889999999999999999999998 55664 4455555544 2345678889999
Q ss_pred HHHHhccCCCCcc
Q 006627 568 ATQILEIEPQNYG 580 (638)
Q Consensus 568 ~~~~~~~~p~~~~ 580 (638)
++++++..|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999998653
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.10 E-value=2e-06 Score=70.46 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCC
Q 006627 561 PSMGEIAATQILEIEPQNYGYNVLMSNIYAVAN-----------RWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 561 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 610 (638)
+++|+..|+++++++|+++.+|..+|.+|...| ++++|+++|++..+..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 568888888888888888888888888888774 78888888888766544
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.09 E-value=8.3e-06 Score=64.31 Aligned_cols=62 Identities=8% Similarity=-0.077 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 545 MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
...+..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555555555555555555543
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=1.8e-05 Score=79.42 Aligned_cols=123 Identities=9% Similarity=-0.014 Sum_probs=89.4
Q ss_pred HhccCcHHHHHHHHHHHhhhcC--C---CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhhHHH
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLG--L---VPK-IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIVWGA 550 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 550 (638)
+..+|++++|..++++..+... + .|+ ..+++.|..+|...|++++|..+++++ +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777777666554211 1 122 356777777777777777777777665 23344 456788
Q ss_pred HHHHHhhcCChHHHHHHHHHHhc-----cCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 551 LLAASKLHKNPSMGEIAATQILE-----IEPQNYGY---NVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
|...|...|++++|+..++++++ +.|++|.+ ...+..++...|++++|+..+++++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999986 56777654 4578888999999999999999998754
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.7e-05 Score=76.34 Aligned_cols=158 Identities=9% Similarity=-0.040 Sum_probs=115.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCc----------------HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh
Q 006627 450 AGYGMHGCGEEALIFFVDMERSGVKPN----------------GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI 513 (638)
Q Consensus 450 ~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 513 (638)
..+...|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777778777777776431111 1246788899999999999999999887643333332
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HhhHHHHHHHHhhcCChHHHHHHHHHHhcc------C
Q 006627 514 ----EHYGCMVDLLGRAGLLDEAHEMIKSM-------PLRPN-MIVWGALLAASKLHKNPSMGEIAATQILEI------E 575 (638)
Q Consensus 514 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 575 (638)
...+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|...++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22334445556779999999988766 22332 567788899999999999999999999763 2
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 576 PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 576 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23356788999999999999999999998864
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.04 E-value=1.7e-05 Score=59.22 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV 591 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 591 (638)
..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++++|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44555666666666666666666665 2233 456677777788888888888888888888888888888888888766
Q ss_pred cC
Q 006627 592 AN 593 (638)
Q Consensus 592 ~g 593 (638)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=1.4e-05 Score=80.64 Aligned_cols=114 Identities=10% Similarity=-0.002 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKL 557 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 557 (638)
..+..+...+.+.|++++|...|+++.+.....++.. .++..+ .. .-....|..+..++.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~-~~----~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA-SE----SFLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-HH----HHHHHHHHHHHHHHHH
Confidence 4566666666666777777777666654211111100 000000 00 0014677888899999
Q ss_pred cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 558 HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 558 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+..+
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999876544
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=1.5e-05 Score=77.61 Aligned_cols=115 Identities=11% Similarity=0.006 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 006627 477 GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRP-NMIVWGALLAAS 555 (638)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 555 (638)
...+..+...+.+.|++++|.+.|+++.+.. +.. ......+++. ...| +..+|..+...+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3457777778888888888888888877520 100 0001111111 1223 357788888999
Q ss_pred hhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 556 KLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 556 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.+.|++++|+..++++++++|+++.++..++.+|...|++++|++.|++..+..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999876543
No 200
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=2.7e-05 Score=65.51 Aligned_cols=132 Identities=14% Similarity=-0.024 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC----hhH
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERSGV---KPN--GITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK----IEH 515 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 515 (638)
+..+...+...|++++|+..+++..+... .+. ..++..+...+...|++++|.+.+++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444555555566666655555443210 111 135666667777777788777777776542111111 345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCC
Q 006627 516 YGCMVDLLGRAGLLDEAHEMIKSM-------PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
+..+..++...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 666677777788888888777665 1111 134566777788888999999999988887544
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00018 Score=74.19 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=125.2
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc----------HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh
Q 006627 456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL----------VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR 525 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (638)
...++|++.++++.... +-+...|+.--.++...|+ ++++++.++++.+ ..+-+...|+.-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 34578899999999874 3344567666666666666 8999999999997 445567888888888999
Q ss_pred cC--ChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcC-ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc--------
Q 006627 526 AG--LLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHK-NPSMGEIAATQILEIEPQNYGYNVLMSNIYAVA-------- 592 (638)
Q Consensus 526 ~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 592 (638)
.| +++++++.++++ ...| +..+|..-.......| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 99 679999999998 4444 6888988888888888 899999999999999999999999999998885
Q ss_pred ------CCHHHHHHHHHHHhhcCCc
Q 006627 593 ------NRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 593 ------g~~~~A~~~~~~~~~~~~~ 611 (638)
+++++|.+++++.....+.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC
Confidence 6789999999888765443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.6e-05 Score=60.78 Aligned_cols=68 Identities=6% Similarity=-0.167 Sum_probs=62.4
Q ss_pred CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
+...+..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678888899999999999999999999999999999999999999999999999999998765543
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.00011 Score=59.94 Aligned_cols=90 Identities=2% Similarity=-0.183 Sum_probs=55.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 006627 519 MVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAV--- 591 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 591 (638)
|...|...+..++|.++|++.-..-++.....+...|.. .+|+++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444555555555544222344555555555555 56777777777777665 456677777777777
Q ss_pred -cCCHHHHHHHHHHHhhcCC
Q 006627 592 -ANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 592 -~g~~~~A~~~~~~~~~~~~ 610 (638)
.+++++|.+.|++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 7777777777777766553
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=1.5e-05 Score=65.29 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHhhc-----------CChHHHHHHHHHHhccCCCCc
Q 006627 530 DEAHEMIKSM-PLRP-NMIVWGALLAASKLH-----------KNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 530 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~ 579 (638)
++|+..|+++ .+.| +..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3555555554 3344 345555666666554 589999999999999999975
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=6.6e-05 Score=55.85 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=60.9
Q ss_pred CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 544 NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567778888999999999999999999999999999999999999999999999999999876543
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=8.7e-05 Score=58.26 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 495 EGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 495 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
.|.+.++++.+ ..+.+...+..+..++...|++++|+..++++ ...| +...|..+...+...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666554 22334566666677777777777777777666 2333 46677777888888888888888888888
Q ss_pred ccCCCC
Q 006627 573 EIEPQN 578 (638)
Q Consensus 573 ~~~p~~ 578 (638)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887753
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.67 E-value=4.7e-05 Score=72.97 Aligned_cols=429 Identities=9% Similarity=0.044 Sum_probs=261.1
Q ss_pred chHhhhhHHHhhhhcCChhHHHHhhhhh---hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc
Q 006627 9 NLEQTRQCHAHIIKTHFKFSYTNIINPL---TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL 85 (638)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 85 (638)
...+|..|.++..+.|++.+|++.|-+. ..|..+|.+..+.|.+++-+.++...++.. -++..=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 6788999999999999999999999888 899999999999999999999998776653 34455568899999998
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCC------------------------CCcchHH
Q 006627 86 MTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPN------------------------RDVVSWS 141 (638)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~ 141 (638)
+..+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.||.
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 8776544332 45655566666777777777777777765532 4678999
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHh
Q 006627 142 TMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSK 221 (638)
Q Consensus 142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (638)
.+-.+|...+.+.-|.-+--.+. +.|+ ....++..|-..|.+++...+++.-.....- ...+|+.|.-.|++
T Consensus 204 eV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglErA---HmGmFTELaILYsK 275 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLERA---HMGMFTELAILYSK 275 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC---CHHHHHHHHHHHHS
T ss_pred HHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHh
Confidence 99999999999887765543333 1222 2334566678888888888777766532211 46788999888887
Q ss_pred cCChHHHHHHHhccCC----C-------CcccHHHHHHHHHhCCChHHHHHHHHHHHHc--------------CccCChH
Q 006627 222 CGNLAYAKQLFNRLNQ----N-------SVVSWTVMISGYIRCNEINEGVRLFAEMIEE--------------NVFPSEI 276 (638)
Q Consensus 222 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------~~~p~~~ 276 (638)
- +.++..+.++..-. | ....|..++-.|.+-.+++.|... |.++ .-.+|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~E 351 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVE 351 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHH
Confidence 6 45555554443322 2 345678888888888887766532 2211 0123444
Q ss_pred hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhH-HHHHHHHHhcC
Q 006627 277 TILSLIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIW-NAVISAYAQAH 355 (638)
Q Consensus 277 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~ 355 (638)
.|-..|.-|.... +....+++.-+. . +.|. ...++.+.+.|.+.-....+..+...|...- .++-..|....
T Consensus 352 iyYKAi~FYL~e~-P~lL~DLL~vL~-p--rlDh---~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE 424 (624)
T 3lvg_A 352 LYYRAIQFYLEFK-PLLLNDLLMVLS-P--RLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE 424 (624)
T ss_dssp HHHHHHHHHTTSC-CTTSHHHHHHHC-T--TCCS---TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-hHHHHHHHHhcc-c--cCCh---HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 4444444443221 111111111110 0 1111 1234445555555555555555555554433 34445566666
Q ss_pred CHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHH
Q 006627 356 CIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFS 435 (638)
Q Consensus 356 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 435 (638)
+++.-.. .+..|-+-.+...|.++ .+ .+-...-..-...|.+.++++++..+.+
T Consensus 425 Dy~~LR~-------------------SId~ydNFD~i~LA~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 425 DYQALRT-------------------SIDAYDNFDNISLAQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp CCHHHHH-------------------TTSSCCCSCTTHHHHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred hHHHHHH-------------------HHHHhccccHHHHHHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 6543221 11122222222322222 21 1112222333456777888888876543
Q ss_pred cCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 006627 436 EAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSV 499 (638)
Q Consensus 436 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 499 (638)
+= ..|.-.|......|+.+-|.++++-..+.| +...|...+..|-..=++|-++++
T Consensus 479 kD-----klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 479 KD-----SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TT-----CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred hc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 21 122223444566788888888888888876 335577777777777777777665
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.61 E-value=0.00071 Score=55.01 Aligned_cols=112 Identities=10% Similarity=-0.111 Sum_probs=91.7
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHh----cCChHH
Q 006627 456 GCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGR----AGLLDE 531 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 531 (638)
+++++|+..|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+......|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 55544 777788888899999999999873 456777788888887 789999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhh----cCChHHHHHHHHHHhccCC
Q 006627 532 AHEMIKSMPLRPNMIVWGALLAASKL----HKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 532 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 576 (638)
|.++|++.-..-++.....+...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988334567788888888888 7899999999999998753
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.56 E-value=0.00018 Score=54.59 Aligned_cols=80 Identities=10% Similarity=0.044 Sum_probs=61.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHh-hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 006627 519 MVDLLGRAGLLDEAHEMIKSM-PLRP-NMI-VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRW 595 (638)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 595 (638)
....+.+.|++++|.+.++++ ...| +.. .+..+...+...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456778889999999999887 3445 456 78888888889999999999999999999998776633 556
Q ss_pred HHHHHHHHHHh
Q 006627 596 NDVAGVRRVMK 606 (638)
Q Consensus 596 ~~A~~~~~~~~ 606 (638)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 66666666543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=9.8e-05 Score=56.05 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=26.6
Q ss_pred HHhhcCChHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 554 ASKLHKNPSMGEIAATQILEIEPQNYG-YNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 554 ~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
.+...|++++|+..++++++.+|+++. .+..++.+|...|++++|++.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444555555555555555554444 455555555555555555555544443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.40 E-value=0.005 Score=58.12 Aligned_cols=119 Identities=13% Similarity=-0.016 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhc---cC-----cHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627 458 GEEALIFFVDMERSGVKPN-GITFIGLLNACSH---AG-----LVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL 528 (638)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 528 (638)
..+|..+|++..+. .|+ ...+..+..+|.. .+ ........++........+.+...+..+...+...|+
T Consensus 215 ~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 46788888888876 454 3455554444431 00 0000011111111100123344444444444444455
Q ss_pred hHHHHHHHHhC-CCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCC
Q 006627 529 LDEAHEMIKSM-PLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQN 578 (638)
Q Consensus 529 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 578 (638)
+++|...++++ ...|+...|..+...+...|+.++|...+++++.++|..
T Consensus 293 ~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 55555555555 233444444444555555555555555555555555543
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.39 E-value=0.00088 Score=67.24 Aligned_cols=132 Identities=6% Similarity=-0.093 Sum_probs=79.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CcCCC----hhhHHHHHHHHhccCchHHHHHHHHHHHHh-----C--CCCcccHHH
Q 006627 350 AYAQAHCIDKAFELFIHMKVS---KVRPN----EVTMVGLLSLCTEAGALEMGKWLHTYIEKQ-----G--LEVDVILKT 415 (638)
Q Consensus 350 ~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 415 (638)
.+..+|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|..++++..+. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777665332 12222 235556666677777777777766655431 1 112234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHH
Q 006627 416 ALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVT 494 (638)
Q Consensus 416 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~ 494 (638)
.|...|...|++++|+.++ ++|+.+++...-.. .|+. .+...+..++...+.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~------------------------~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMI------------------------CKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHH------------------------HHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH------------------------HHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777766665 34555555544322 2333 45666677777888899
Q ss_pred HHHHHHHHHhhh
Q 006627 495 EGKSVFDKMVHG 506 (638)
Q Consensus 495 ~a~~~~~~~~~~ 506 (638)
+|+..|.++.+.
T Consensus 453 ~ae~~~~~~~~~ 464 (490)
T 3n71_A 453 QNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888888663
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.35 E-value=6.1e-05 Score=72.22 Aligned_cols=366 Identities=11% Similarity=0.057 Sum_probs=222.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcc
Q 006627 208 GVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGF 287 (638)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 287 (638)
.+.+|..|..+....+.+.+|++.|-+ ..|...|..+|....+.|.+++-+..+...++..-.| ..=+.++.+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 567888999999999988888776543 3566788899999999999999999888777654444 444578889999
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC------------------------CCchh
Q 006627 288 VGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCREIRSARTLFDGMKS------------------------KDVMI 343 (638)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~ 343 (638)
.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 998877655543 46666667788888888888888888876642 26778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 006627 344 WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAK 423 (638)
Q Consensus 344 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (638)
|-.+-.+|...+++..|.-.--.+. +.|+ ....++..|...|.+++-+.+++.-.... .....+|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999999999988876643333322 1222 23345666888888888888887766432 4567788888888887
Q ss_pred cCCHHHHHHHHHcCC----CC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 006627 424 CGDVNGAYRLFSEAI----YR-------DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGL 492 (638)
Q Consensus 424 ~~~~~~A~~~~~~~~----~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 492 (638)
- ++++..+.++-.- -| ....|..++-.|.+...++.|... |.++ +|+..-...+-....+..+
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN 349 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVAN 349 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSC
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcch
Confidence 5 5666666554322 22 345788888888888888876543 2221 1222212222222222222
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------------CCCCCHhhHHHHHHHHhhcC
Q 006627 493 VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-------------PLRPNMIVWGALLAASKLHK 559 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~p~~~~~~~l~~~~~~~~ 559 (638)
.+--.+...=-. ...|. ..+.|+.++...=+...+.++|++. ....+...-..+-..+....
T Consensus 350 ~EiyYKAi~FYL---~e~P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE 424 (624)
T 3lvg_A 350 VELYYRAIQFYL---EFKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE 424 (624)
T ss_dssp SHHHHHHHHHHT---TSCCT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---HhChH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 222111111111 11121 2333444444344444444444444 22223334444555566666
Q ss_pred ChHHHHHHH------------HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006627 560 NPSMGEIAA------------TQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRR 603 (638)
Q Consensus 560 ~~~~A~~~~------------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (638)
|++.-+... +++.+ . +-......-+.+|.+.++|++++.+.+
T Consensus 425 Dy~~LR~SId~ydNFD~i~LA~rLEk-H-eL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 425 DYQALRTSIDAYDNFDNISLAQRLEK-H-ELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp CCHHHHHTTSSCCCSCTTHHHHHHHT-C-SSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred hHHHHHHHHHHhccccHHHHHHHHhh-C-chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666433322 11111 1 113345566777888899998876543
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.22 E-value=0.00086 Score=60.44 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=64.2
Q ss_pred HHHHHHHHhC-CCCCC---HhhHHHHHHHHhh-----cCChHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCHHHH
Q 006627 530 DEAHEMIKSM-PLRPN---MIVWGALLAASKL-----HKNPSMGEIAATQILEIEPQN-YGYNVLMSNIYAVA-NRWNDV 598 (638)
Q Consensus 530 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 598 (638)
.+|...++++ .+.|+ -..|..+...|.. .|+.++|++.|+++++++|+. ...++.+++.++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444444 34555 4466667666766 489999999999999999974 88899999988885 899999
Q ss_pred HHHHHHHhhcCCcCCCC
Q 006627 599 AGVRRVMKEIRVKKEPG 615 (638)
Q Consensus 599 ~~~~~~~~~~~~~~~~~ 615 (638)
.+++++.....+..+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999888877775565
No 215
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.20 E-value=0.27 Score=50.65 Aligned_cols=251 Identities=9% Similarity=-0.013 Sum_probs=129.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCch
Q 006627 313 ANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGAL 392 (638)
Q Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (638)
-..-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34455666777888888887766 33344555556677777888777777776665444 33445566666666655533
Q ss_pred HHH--HHHHHHHHHhC-----------CCCccc-HHHHHHHHHHhcCCHHHHHHHHHcCCCCCch---hHHHHHHHHHhc
Q 006627 393 EMG--KWLHTYIEKQG-----------LEVDVI-LKTALVDMYAKCGDVNGAYRLFSEAIYRDIC---MWNAMMAGYGMH 455 (638)
Q Consensus 393 ~~a--~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~ 455 (638)
... .+=++.+...| ++++.. ....++..+ .++..+....... .++.. .+...+.-+.+
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-GATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-
Confidence 221 11111222111 122211 111222111 1223333333222 11111 11111222222
Q ss_pred CChHHHHHHHHHHHHcC-CCCcH--HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627 456 GCGEEALIFFVDMERSG-VKPNG--ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 532 (638)
++.+.|...+....... +.+.. .....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888776543 22222 12333343445555345555555554432 23333333344445577888888
Q ss_pred HHHHHhCCCCC-C-HhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 533 HEMIKSMPLRP-N-MIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 533 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
...|+.++..+ + .....-+..+....|+.++|...|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888885433 2 33333455566778888888888888875
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.19 E-value=0.0012 Score=50.07 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 441 DICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
+...+..+..++...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33455555566666666666666666666543 22345566666666666666666666666554
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.15 E-value=0.00052 Score=67.65 Aligned_cols=85 Identities=12% Similarity=-0.019 Sum_probs=39.6
Q ss_pred ccCcHHHHHHHHHHHhhhc--CCCC---C-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhhHHHHH
Q 006627 489 HAGLVTEGKSVFDKMVHGL--GLVP---K-IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIVWGALL 552 (638)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 552 (638)
..|++++|..++++..+.. -+.| + ..+++.|..+|...|++++|..+++++ +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466677766666654421 1111 1 134455555555555555555555443 11222 23344444
Q ss_pred HHHhhcCChHHHHHHHHHHhc
Q 006627 553 AASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~ 573 (638)
..|..+|++++|+..++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 444444444444444444444
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.13 E-value=0.0039 Score=58.85 Aligned_cols=133 Identities=12% Similarity=0.125 Sum_probs=90.2
Q ss_pred CCcHHHHHHHHHHHh--c---cCcHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHH----hcCCh-------HHHHHHH
Q 006627 474 KPNGITFIGLLNACS--H---AGLVTEGKSVFDKMVHGLGLVPKI-EHYGCMVDLLG----RAGLL-------DEAHEMI 536 (638)
Q Consensus 474 ~p~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~----~~g~~-------~~A~~~~ 536 (638)
+.+...|...+++.. . ..+..+|..+|+++++ ..|+. ..+..+..++. ..+.. ..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 455566766665532 2 2346889999999986 35653 34443333332 11111 1222222
Q ss_pred HhCC-CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 537 KSMP-LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 537 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
..+. .+.++.++..+...+...|++++|...++++++++|. ...|..+++++.-.|++++|.+.+++...-.+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2332 2346777777777777789999999999999999985 67889999999999999999999998866544
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.0012 Score=53.31 Aligned_cols=95 Identities=13% Similarity=-0.065 Sum_probs=74.3
Q ss_pred cCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHhhHHHHHHHHhhcCChH
Q 006627 490 AGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAG---LLDEAHEMIKSM-PLR-P--NMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 490 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~ 562 (638)
......+.+-|.+... .-+++..+...+..++++++ +.++++.++++. ... | ....+..+.-++.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 3456677777777765 33478888888899999988 666999998887 323 5 3567777888889999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHH
Q 006627 563 MGEIAATQILEIEPQNYGYNVLMS 586 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~~~~l~ 586 (638)
+|++.++++++.+|++..+..+.-
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999877766653
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.0011 Score=65.40 Aligned_cols=102 Identities=10% Similarity=-0.037 Sum_probs=61.6
Q ss_pred HHHHhccCcHHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-Hhh
Q 006627 484 LNACSHAGLVTEGKSVFDKMVHGL--GLVPK----IEHYGCMVDLLGRAGLLDEAHEMIKSM---------PLRPN-MIV 547 (638)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 547 (638)
+..+.+.|++++|...+++..+.. -+.|+ ..+++.++..|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556777777777777776421 11221 245666677777777777777776655 12233 345
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhc-----cCCCCcchHHHH
Q 006627 548 WGALLAASKLHKNPSMGEIAATQILE-----IEPQNYGYNVLM 585 (638)
Q Consensus 548 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l 585 (638)
++.+...|...|++++|+..++++++ +.|++|.+-..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 56666667777777777777777777 456665544433
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.98 E-value=0.0025 Score=51.46 Aligned_cols=65 Identities=8% Similarity=-0.050 Sum_probs=31.3
Q ss_pred CCHhhHHHHHHHHhhcC---ChHHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 543 PNMIVWGALLAASKLHK---NPSMGEIAATQILEIE-P-QNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 543 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
++..+...+.+++.+.+ +.++++..++.+++.+ | ++...++.|+-.|++.|+|++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444544444 3335555555555544 4 2344445555555555555555555554433
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0034 Score=61.90 Aligned_cols=59 Identities=3% Similarity=-0.074 Sum_probs=26.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhc-----cCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILE-----IEPQNY---GYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
+++.+..+|...|++++|+..++++++ +.|+++ ..+..|+.+|..+|++++|+.++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444444444444444444443 222222 23444444444444444444444444
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.92 E-value=0.054 Score=41.93 Aligned_cols=140 Identities=12% Similarity=-0.020 Sum_probs=98.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006627 453 GMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEA 532 (638)
Q Consensus 453 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 532 (638)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++..-+-|.+ ..+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467888888888887764 23344555554445556667777777777553222 234444444
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q 006627 533 HEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVK 611 (638)
Q Consensus 533 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (638)
.+.+-.++ .+.......+.....+|..++-..++..++.-+|-+|+...-++.+|.+.|+..+|.+++.+.=+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444442 244556667778889999999999999987777777999999999999999999999999999888864
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.90 E-value=0.62 Score=49.85 Aligned_cols=258 Identities=15% Similarity=0.003 Sum_probs=136.2
Q ss_pred HHHHHhcCChHHHHHHHhccCCC----Ccc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCc-------cCChHhHHHHH
Q 006627 216 IDMYSKCGNLAYAKQLFNRLNQN----SVV--SWTVMISGYIRCNEINEGVRLFAEMIEENV-------FPSEITILSLI 282 (638)
Q Consensus 216 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll 282 (638)
.-+....|+.+++..+++..... +.. .=..+.-+.+..|..+++.+++.......- .+....-..+-
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34566778888888888876642 111 112333456666766778887777654311 01111111222
Q ss_pred HHhcccCCh-hhHHHHHHHHHHhcCCCch--hhHHHHHHHHHhcCChHHHHHHHhcCCCC-Cc--hhHHHHHHHHHhcCC
Q 006627 283 IECGFVGGL-QLGKWLHAYILRNGFEFSL--AMANALVDMYGKCREIRSARTLFDGMKSK-DV--MIWNAVISAYAQAHC 356 (638)
Q Consensus 283 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~li~~~~~~~~ 356 (638)
-+.+..|.- +.+...+..+....- +.. ..-.++...++-.|+-+....++..+.+. +. .-...+.-++...|+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 222223322 233444444433221 111 11223344455667777777666654322 22 222333445567788
Q ss_pred HHHHHHHHHHHHHcCcCCChhhHH---HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 006627 357 IDKAFELFIHMKVSKVRPNEVTMV---GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRL 433 (638)
Q Consensus 357 ~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 433 (638)
.+.+..+++.+.... .|. .-|. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888876531 222 2233 33457788899888888888887643 33333333334444556777777777
Q ss_pred HHcCC-CCCchhHH--HHHHHHHhcCCh-HHHHHHHHHHHHcCCCCcHHHH
Q 006627 434 FSEAI-YRDICMWN--AMMAGYGMHGCG-EEALIFFVDMERSGVKPNGITF 480 (638)
Q Consensus 434 ~~~~~-~~~~~~~~--~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~ 480 (638)
++.+. ..|...-. .+.-+....|+. .+++.++..+.. .+|..+-
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 76554 23443332 333444444544 678888888864 4555443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.89 E-value=0.0047 Score=47.05 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHH
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM-----P----LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLM 585 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 585 (638)
....++..+...|+++.|..+++.+ + -.+....+..+..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3344555555666666666665554 0 123467788888999999999999999999999999987765555
Q ss_pred H
Q 006627 586 S 586 (638)
Q Consensus 586 ~ 586 (638)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.87 E-value=0.0065 Score=59.98 Aligned_cols=84 Identities=10% Similarity=-0.028 Sum_probs=48.3
Q ss_pred HHhcCChHHHHHHHHhC------CCCCC----HhhHHHHHHHHhhcCChHHHHHHHHHHhc-----cCCCCc---chHHH
Q 006627 523 LGRAGLLDEAHEMIKSM------PLRPN----MIVWGALLAASKLHKNPSMGEIAATQILE-----IEPQNY---GYNVL 584 (638)
Q Consensus 523 ~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~ 584 (638)
+.+.|++++|.+++++. -+.|+ ..+++.+..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666544 01222 24555666666666666666666666664 233333 34556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 006627 585 MSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
|+.+|..+|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666554
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.69 E-value=0.014 Score=43.20 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=55.9
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHH
Q 006627 510 VPKIEHYGCMVDLLGRAGL---LDEAHEMIKSM-PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVL 584 (638)
Q Consensus 510 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 584 (638)
++++..+..+..++...++ .++|..+++++ ...| ++..+..+...+...|++++|+..|+++++.+|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4456677777777765544 68888888877 4455 4677788888899999999999999999999998 444433
Q ss_pred H
Q 006627 585 M 585 (638)
Q Consensus 585 l 585 (638)
+
T Consensus 82 i 82 (93)
T 3bee_A 82 I 82 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.092 Score=57.13 Aligned_cols=114 Identities=23% Similarity=0.159 Sum_probs=78.4
Q ss_pred HHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHH
Q 006627 319 MYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWL 398 (638)
Q Consensus 319 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (638)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888887764 457888899999999999999999987642 33455555557777766666
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 006627 399 HTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVD 467 (638)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 467 (638)
-+.....|. ++.-..+|.+.|++++|.+++ ...+++++|..+-+.
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 655555441 233445566678888877765 456777777776554
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.0094 Score=45.34 Aligned_cols=67 Identities=9% Similarity=-0.113 Sum_probs=56.2
Q ss_pred CHhhHHHHHHHHhhcCChHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 544 NMIVWGALLAASKLHKNPSMGEIAATQILEIE-------PQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 544 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+..-...++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34556678889999999999999999999853 33467899999999999999999999998876544
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.19 E-value=0.046 Score=42.36 Aligned_cols=76 Identities=16% Similarity=-0.020 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 511 PKIEHYGCMVDLLGRAGLLDE---AHEMIKSM-PLR-P--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
|+..+--.+..++.++.+..+ ++.++++. ... | .......+.-++.+.|+++.|++.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554444 55555544 212 3 2344455667788889999999999999999998877766
Q ss_pred HHH
Q 006627 584 LMS 586 (638)
Q Consensus 584 ~l~ 586 (638)
+..
T Consensus 113 Lk~ 115 (126)
T 1nzn_A 113 LER 115 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.15 Score=55.47 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=86.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627 350 AYAQAHCIDKAFE-LFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN 428 (638)
Q Consensus 350 ~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 428 (638)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+. | ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCCHH
Confidence 3345667777665 44111 1011225555666667777776655421 1 11133456678888
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcC
Q 006627 429 GAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLG 508 (638)
Q Consensus 429 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 508 (638)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+..... |
T Consensus 670 ~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~ 737 (814)
T 3mkq_A 670 LARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G 737 (814)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C
Confidence 888877655 3456788888888888888888888877542 333444444456666555544444331 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 509 LVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
.++.-..+|.+.|++++|++++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1223334455566666666665554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.88 E-value=0.033 Score=44.20 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=69.1
Q ss_pred CCcHHHHHHHHHHHhccCcH------HHHHHHHHHHhhhcCCCCChh-HHHHHHH------HHHhcCChHHHHHHHHhC-
Q 006627 474 KPNGITFIGLLNACSHAGLV------TEGKSVFDKMVHGLGLVPKIE-HYGCMVD------LLGRAGLLDEAHEMIKSM- 539 (638)
Q Consensus 474 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~- 539 (638)
+-|..+|-..+....+.|+. ++..++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33567777777777777888 888889998887 6777531 1112221 223447888888888776
Q ss_pred C--CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 540 P--LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 540 ~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
. .+- ...|......-.++|+...|++++.+++.+.|...
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 1 111 56666666667778888888888888888877743
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.86 E-value=0.027 Score=43.61 Aligned_cols=69 Identities=6% Similarity=-0.074 Sum_probs=59.0
Q ss_pred CCCHhhHHHHHHHHhhcCChHH---HHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 542 RPNMIVWGALLAASKLHKNPSM---GEIAATQILEIE-P-QNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 542 ~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.|+..+-..+.+++.+.++... ++.+++.++..+ | ........|+-.+++.|+|++|+++++.+.+..|
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4788898999999998887655 999999999877 6 4567889999999999999999999999876544
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.48 Score=39.27 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 006627 420 MYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSV 499 (638)
Q Consensus 420 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 499 (638)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344556666666655544 3455666666666666666666666655332 22333334445555444444
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006627 500 FDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSMP 540 (638)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (638)
-+....+ | -++.-..++.-.|+++++.+++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3333221 1 12333344445666666666666554
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.044 Score=57.40 Aligned_cols=55 Identities=4% Similarity=-0.112 Sum_probs=50.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 551 LLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 551 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
-...+...|+++.|+.+.++++..-|.+-..|..|+.+|...|+|+.|+-.+..+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456677899999999999999999999999999999999999999999999877
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.49 E-value=0.02 Score=51.75 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HhhHHHHHHHHhh-cCCh
Q 006627 494 TEGKSVFDKMVHGLGLVPK---IEHYGCMVDLLGRA-----GLLDEAHEMIKSM-PLRPN--MIVWGALLAASKL-HKNP 561 (638)
Q Consensus 494 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~ 561 (638)
..|...+++..+ +.|+ ...|..++..|... |+.++|.+.|+++ .+.|+ ..++..+...+.. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 445555555543 3454 34566666666663 7777777777776 45552 5666666666666 4788
Q ss_pred HHHHHHHHHHhccCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 562 SMGEIAATQILEIEPQN-YGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 562 ~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
++|.+.+++++..+|.. |.. . +...++-.+|..+++++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~--~----lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHN--K----LLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSC--H----HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCCh--h----HHHHHHHHHHHHHHHHh
Confidence 88888888888877764 331 2 22333445555555544
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.25 E-value=0.79 Score=35.62 Aligned_cols=138 Identities=9% Similarity=0.026 Sum_probs=84.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCccc---HHHHHHHHHHhcCCH
Q 006627 351 YAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDVI---LKTALVDMYAKCGDV 427 (638)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 427 (638)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+ -.|.. -...++.+|.+.+..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n~~ 90 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNTL 90 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTCC
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhcch
Confidence 34467777777777776643 2444555555444444454554555544433 11211 123344455544432
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhc
Q 006627 428 NGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGL 507 (638)
Q Consensus 428 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 507 (638)
...+...+..+...|+-++..+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++
T Consensus 91 --------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k- 154 (172)
T 1wy6_A 91 --------------NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK- 154 (172)
T ss_dssp --------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred --------------HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence 233445567777888888888888886443 3788888888888888888888888888888775
Q ss_pred CCC
Q 006627 508 GLV 510 (638)
Q Consensus 508 ~~~ 510 (638)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 554
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.22 E-value=4.1 Score=43.75 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHH
Q 006627 139 SWSTMIRGYHRGGLPEEALEVMREMRF 165 (638)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (638)
-|..++.++.+.++.+.+.++|..+..
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777788888888888888763
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=1.1 Score=44.38 Aligned_cols=258 Identities=12% Similarity=0.075 Sum_probs=117.6
Q ss_pred CCchhHHHHHHHHHHC-----CCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHHh----hhcCC
Q 006627 50 NKPSSALNIYAFMRKN-----GSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQM----YSECG 120 (638)
Q Consensus 50 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~ 120 (638)
++++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..-.. ......+++. +....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4555666555444321 112223345666677777777777766665554332111 1222222222 22222
Q ss_pred Chh--HHHHHhccCC---CCC-------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhcccCch
Q 006627 121 SLV--SARYLFDEMP---NRD-------VVSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFADVADV 188 (638)
Q Consensus 121 ~~~--~a~~~~~~~~---~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 188 (638)
..+ .-..+.+... +.- ......|...+...|++.+|.+++..+...-...+....
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence 221 1222222222 111 112356778888889999999998887642111111110
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC-----C-C----cccHHHHHHHHHhCCChHH
Q 006627 189 DLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-----N-S----VVSWTVMISGYIRCNEINE 258 (638)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~ 258 (638)
-...+..-++.|...+++..|..++.++.. + + ...|..++..+...+++.+
T Consensus 176 -------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 176 -------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 112223334444444444444444443321 0 0 1234445555555666666
Q ss_pred HHHHHHHHHHc-CccCChHhHHH----HHHHhcccCChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhc--CChHHHHH
Q 006627 259 GVRLFAEMIEE-NVFPSEITILS----LIIECGFVGGLQLGKWLHAYILRNGFEFSLAMANALVDMYGKC--REIRSART 331 (638)
Q Consensus 259 a~~~~~~m~~~-~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~ 331 (638)
|.+.|.+.... ....|...+.. ++.+..-.+....-..+.........-++...+..++.+|... .+++...+
T Consensus 237 a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~ 316 (445)
T 4b4t_P 237 VAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQK 316 (445)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHH
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHH
Confidence 66665555432 11112221111 1111111222222223333333333335566778888888654 46777888
Q ss_pred HHhcCCCCC
Q 006627 332 LFDGMKSKD 340 (638)
Q Consensus 332 ~~~~~~~~~ 340 (638)
.|.....++
T Consensus 317 ~~~~~L~~~ 325 (445)
T 4b4t_P 317 TYEPVLNED 325 (445)
T ss_dssp HTCSSTTTC
T ss_pred HHHHHhccc
Confidence 887765443
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.84 E-value=0.2 Score=39.85 Aligned_cols=103 Identities=5% Similarity=0.018 Sum_probs=71.0
Q ss_pred CCCchhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCcHH----HHHHHHH---HHhccCcHHHHHHHHHHHhh
Q 006627 439 YRDICMWNAMMAGYGMHGCG------EEALIFFVDMERSGVKPNGI----TFIGLLN---ACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 439 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~ 505 (638)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+-- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44778888888888888888 8888888888875 577541 1211111 12344788899999998876
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 006627 506 GLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN 544 (638)
Q Consensus 506 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 544 (638)
. .-.- ...|-.....-.|+|+...|.+++.+. +..|.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4 2222 566666666678899999999998877 44443
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.54 E-value=0.36 Score=38.09 Aligned_cols=76 Identities=12% Similarity=-0.048 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 510 VPKIEHYGCMVDLLGRAGLLD---EAHEMIKSM-PLRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 510 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
.|+..+--.+..++.++.+.+ +++.++++. ...| .......+.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567777777778888777554 566666665 2233 2445556667788888999999999999999998876655
Q ss_pred HH
Q 006627 584 LM 585 (638)
Q Consensus 584 ~l 585 (638)
+.
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.34 E-value=0.14 Score=39.74 Aligned_cols=76 Identities=12% Similarity=-0.048 Sum_probs=48.1
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHH
Q 006627 510 VPKIEHYGCMVDLLGRAGLLD---EAHEMIKSM-PLRP--NMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNV 583 (638)
Q Consensus 510 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 583 (638)
.|+..+--.+..++.++.+.+ +++.++++. ...| ....+..+.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 355555555666777666543 456666555 2234 2455556666777788888888888888888887766555
Q ss_pred HH
Q 006627 584 LM 585 (638)
Q Consensus 584 ~l 585 (638)
+.
T Consensus 117 Lk 118 (134)
T 3o48_A 117 LK 118 (134)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.74 E-value=4.3 Score=37.65 Aligned_cols=170 Identities=9% Similarity=0.040 Sum_probs=104.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHhHHCCCcCCHhhHHHHHHHhc
Q 006627 108 VSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEV----MREMRFMDIRPSEVAMISMVSLFA 183 (638)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 183 (638)
.+.++..-|.+.+++++|++++-. -...+.+.|+...+-++ ++.+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555567888899999888632 23345566776555444 466667788899888888888877
Q ss_pred ccCch-----HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHH
Q 006627 184 DVADV-----DLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINE 258 (638)
Q Consensus 184 ~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 258 (638)
....- .-......+..+.|..+..++.....+...|.+.+++.+|...|-.-..++...|..++..+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 65532 2334445555565655555899999999999999999999988743222223455444444433332111
Q ss_pred HHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHH
Q 006627 259 GVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILR 303 (638)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 303 (638)
+|... ...+-.|...+++..|..+++...+
T Consensus 186 --------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11112 2223345556777777777666554
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.33 E-value=3 Score=34.56 Aligned_cols=99 Identities=9% Similarity=0.053 Sum_probs=59.5
Q ss_pred HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHH
Q 006627 320 YGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLH 399 (638)
Q Consensus 320 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (638)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44667777777777665 3456788888888888888888877776542 334444455566666655555
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHH
Q 006627 400 TYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFS 435 (638)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 435 (638)
+.....| . ++.-...+.-.|+++++.++|.
T Consensus 84 ~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 84 NIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444 1 2333334444566666665553
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.78 E-value=5.9 Score=36.47 Aligned_cols=170 Identities=9% Similarity=0.120 Sum_probs=104.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHH----HHHHhHHCCCcCCHhhHHHHHHHhc
Q 006627 108 VSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALE----VMREMRFMDIRPSEVAMISMVSLFA 183 (638)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~t~~~ll~~~~ 183 (638)
.|.++..-|.+.+++++|++++.. -...+.+.|+...|-+ +++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555667778888888888642 2334556677665555 4566667788899888888888776
Q ss_pred ccC-----chHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhC---CC
Q 006627 184 DVA-----DVDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRC---NE 255 (638)
Q Consensus 184 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 255 (638)
... ..+-......+..+.+..+..++.....+...|.+.|++.+|...|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533 2234455555666665544558899999999999999999999877532212333444443333332 33
Q ss_pred hHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHHHHH
Q 006627 256 INEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAYILR 303 (638)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 303 (638)
..++ |... ...+-.+...++...|..+++...+
T Consensus 184 ~~e~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV--------------AEFF-SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchH--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2221 1111 1122234456788888877776543
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.68 E-value=0.19 Score=48.68 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=57.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCcCCCCe
Q 006627 547 VWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE-----IRVKKEPGF 616 (638)
Q Consensus 547 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 616 (638)
+...++.++...|+++++...++.++..+|-+...+..+..+|.+.|+..+|++.|+.+.+ -|+.|.|.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445667777889999999999999999999888999999999999999999999888754 366666543
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.63 E-value=1.6 Score=34.47 Aligned_cols=69 Identities=6% Similarity=-0.119 Sum_probs=44.9
Q ss_pred CCCHhhHHHHHHHHhhcCC---hHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 542 RPNMIVWGALLAASKLHKN---PSMGEIAATQILEIEPQ-NYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 542 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
.|+..+-..+.++..+..+ ..+++.+++.+....|. .......|+-.+++.|+|++|+++.+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4666666666666666553 44667777777776663 345566677777777777777777776655443
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.57 E-value=0.6 Score=38.01 Aligned_cols=121 Identities=14% Similarity=0.102 Sum_probs=63.0
Q ss_pred cCCCCcHH--HHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC--
Q 006627 471 SGVKPNGI--TFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI-------EHYGCMVDLLGRAGLLDEAHEMIKSM-- 539 (638)
Q Consensus 471 ~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 539 (638)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|+++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555443 34445566777788888887777765432333332 24455566667777777777776654
Q ss_pred --C---CCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 540 --P---LRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 540 --~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
. ..|+..+ .+. .... ...-..+ +.+.+..+.++.||.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~--~~~----~~ss-------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRP--STG----NSAS-------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccc--ccc----ccCC-------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1111100 000 0000 0000111 223467788999999999999999999865
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.40 E-value=0.66 Score=36.06 Aligned_cols=70 Identities=7% Similarity=-0.050 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHhccCc---HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 006627 474 KPNGITFIGLLNACSHAGL---VTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM-PLRPN 544 (638)
Q Consensus 474 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 544 (638)
.|+..|--.+.+++.+..+ ..+++.+++++.+. +-.-....+..|.-++.+.|++++|.++.+.+ ...|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3444444444444444332 33455555555442 21112334444455555555555555555554 34443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.97 E-value=13 Score=36.58 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCcH---HHHHHHHHHHhccCcHHHHHHHHHHHhhh-cCCC--CC--hh
Q 006627 445 WNAMMAGYGMHGCGEEALIFFVDMERS--GVKPNG---ITFIGLLNACSHAGLVTEGKSVFDKMVHG-LGLV--PK--IE 514 (638)
Q Consensus 445 ~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--p~--~~ 514 (638)
...|...+...|++.+|..++..+... |..+.. ..+...++.|...+++..|..+++++... +... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888899999999999887642 222221 35666778899999999999999987431 1122 22 24
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 515 HYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
.+...+..+...+++.+|.+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5667778888899999998888776
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.90 E-value=1.6 Score=42.13 Aligned_cols=66 Identities=8% Similarity=-0.073 Sum_probs=32.8
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHH-----HhCCCCChhH
Q 006627 42 LVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAI-----KNGLDGDAYV 108 (638)
Q Consensus 42 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 108 (638)
++..+...|++++++..+..+.... +.+...+..++.++.+.|+..+|.+.|+... +.|+.|++.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3344445555555555555554432 3344455555555555555555555554442 2355555443
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.69 E-value=10 Score=35.10 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCcHHHHHHHHHHHh
Q 006627 413 LKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIF----FVDMERSGVKPNGITFIGLLNACS 488 (638)
Q Consensus 413 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 488 (638)
+|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345556668888999999987643 23445566666554444 455667788888888888887776
Q ss_pred ccCcHH-HHHHHHHHHhh---hcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChH
Q 006627 489 HAGLVT-EGKSVFDKMVH---GLGL--VPKIEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 489 ~~~~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 562 (638)
....-+ .=..+.+++++ ++|- .-++.....+...|.+.|++.+|...|- .+..+++..+-.++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 544311 11223333221 1232 2356677778889999999999988874 3434444555444433333322
Q ss_pred HHHHHHHHHhccCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHhhc
Q 006627 563 MGEIAATQILEIEPQNYGYNVL-MSNIYAVANRWNDVAGVRRVMKEI 608 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 608 (638)
|.....+.. .+--|.-.++...|..+++...+.
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333333333 233477889999999988777653
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.46 E-value=11 Score=34.79 Aligned_cols=170 Identities=8% Similarity=-0.048 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCccCChHhHHHHHHH
Q 006627 209 VAIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRL----FAEMIEENVFPSEITILSLIIE 284 (638)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~ 284 (638)
...+..+..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++...+.+++++..+...++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34556777778888999999987643 23456667887777765 4555566899999888888887
Q ss_pred hcccCChh-hHHHHHHHHHH----hcC--CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhc---
Q 006627 285 CGFVGGLQ-LGKWLHAYILR----NGF--EFSLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQA--- 354 (638)
Q Consensus 285 ~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--- 354 (638)
+......+ .-.++++.+++ .|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 76643222 23455555544 221 236677888888888889998888877532222344444444433333
Q ss_pred CCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHH
Q 006627 355 HCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEK 404 (638)
Q Consensus 355 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 404 (638)
|...++- ...-..++ -|...++...|..+++...+
T Consensus 182 ~~~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3333221 11112222 23456777888777776543
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.03 E-value=1.8 Score=35.23 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006627 514 EHYGCMVDLLGRAGLLDEAHEMIKSMP 540 (638)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (638)
+.-..+..|+.+.|++++|+.+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333345566666666666666666654
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.22 E-value=12 Score=42.20 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHM 367 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 367 (638)
..++..+...+..+.+.++..-... ++...-.+..++...|++++|.+.|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455566667777777666554443 3333345566777888888888888764
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.08 E-value=2.3 Score=37.83 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=25.6
Q ss_pred HhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006627 487 CSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
..+.|+++++++....-++ .-+-|...-..|+..+|-.|+++.|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555555555444 33334444445555555555555555554444
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.70 E-value=4.1 Score=36.27 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=74.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChh----HHHHHHHHHHhc
Q 006627 451 GYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIE----HYGCMVDLLGRA 526 (638)
Q Consensus 451 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 526 (638)
...+.|+.++|+..+..-++.. +-|...-..+++.+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4556788888888888877764 55777788888999999999999988887764 345433 33333332
Q ss_pred CChHHHHH-HHHhC--C-CCCCHhhH-HHHHHHH--hhcCChHHHHHHHHHHhccCCCCcc
Q 006627 527 GLLDEAHE-MIKSM--P-LRPNMIVW-GALLAAS--KLHKNPSMGEIAATQILEIEPQNYG 580 (638)
Q Consensus 527 g~~~~A~~-~~~~~--~-~~p~~~~~-~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~ 580 (638)
+...+ +|.-- + +.-.+..| ..++.+. ...|+.++|...-.++++.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11222 12111 1 11122223 3344443 3468888888888888888776554
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.54 E-value=19 Score=37.85 Aligned_cols=50 Identities=12% Similarity=-0.098 Sum_probs=25.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006627 452 YGMHGCGEEALIFFVDMERSGVKPN-GITFIGLLNACSHAGLVTEGKSVFDKM 503 (638)
Q Consensus 452 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 503 (638)
+...|+++.|+++.++.... .|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33445555555555555543 232 345555555555555555555555444
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.29 E-value=3 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627 459 EEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD 521 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 521 (638)
=++.+-++.+....+-|++......+++|.+.+++..|.++++-++.+ ..+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 345556666667778889988888999999999999999998888764 3333456666653
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.16 E-value=22 Score=34.05 Aligned_cols=163 Identities=12% Similarity=-0.019 Sum_probs=85.7
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHhC--C--CCcccHHHHHHHHHHhcC-CHHHHHHHHHcCCC---CCchhH---
Q 006627 377 VTMVGLLSLCTEAGALEMGKWLHTYIEKQG--L--EVDVILKTALVDMYAKCG-DVNGAYRLFSEAIY---RDICMW--- 445 (638)
Q Consensus 377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~--- 445 (638)
.....|...|.+.|+.++..+++...+..= + .-...+...+++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777787777777766554310 0 012334455666665532 33333333333321 122233
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccCcHHHHHHHHHHHhhhc-CCCCChhHH
Q 006627 446 ---NAMMAGYGMHGCGEEALIFFVDMERSGVKPNG-----ITFIGLLNACSHAGLVTEGKSVFDKMVHGL-GLVPKIEHY 516 (638)
Q Consensus 446 ---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~ 516 (638)
.-++..|...|++.+|.+++.++.+.=-..|. ..+..-++.|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14666777777777777777777653112121 234555566777777777777777665421 121332221
Q ss_pred ----HHHHHHHH-hcCChHHHHHHHHhC
Q 006627 517 ----GCMVDLLG-RAGLLDEAHEMIKSM 539 (638)
Q Consensus 517 ----~~l~~~~~-~~g~~~~A~~~~~~~ 539 (638)
..-+..+. ..+++.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 12223344 567777777776553
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.94 E-value=25 Score=33.66 Aligned_cols=125 Identities=9% Similarity=0.072 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhcCCCC--------CchhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCcCCChhhHH-
Q 006627 311 AMANALVDMYGKCREIRSARTLFDGMKSK--------DVMIWNAVISAYAQAH-CIDKAFELFIHMKVSKVRPNEVTMV- 380 (638)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~- 380 (638)
.....|...|.+.|+.++..+++.....- .......++..+.... ..+.-.++..+..+.. .-+..+|-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34566777888888888888877766531 1223344555554432 2333333333332211 01112221
Q ss_pred -----HHHHHHhccCchHHHHHHHHHHHHhCCCCc-----ccHHHHHHHHHHhcCCHHHHHHHHHc
Q 006627 381 -----GLLSLCTEAGALEMGKWLHTYIEKQGLEVD-----VILKTALVDMYAKCGDVNGAYRLFSE 436 (638)
Q Consensus 381 -----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~ 436 (638)
.+...|...|++.+|.+++..+.+.--..| ..++-.-+..|...+++..+...+..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344555566666666666555554211111 12233334445555555555555543
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.29 E-value=3.8 Score=29.93 Aligned_cols=60 Identities=12% Similarity=-0.003 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006627 54 SALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKNGLDGDAYVSNALIQ 114 (638)
Q Consensus 54 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 114 (638)
+...-++.+.....-|++....+.|++|.+.+++..|.++++.++..- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344444444455556666666666666666666666666666665432 222344544443
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.25 E-value=9.9 Score=27.60 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627 391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMER 470 (638)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 470 (638)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||...|.+|.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667777666666542 22222222445677899999999888888888888877644 466777777777777777
Q ss_pred cCCCCcHHHHHH
Q 006627 471 SGVKPNGITFIG 482 (638)
Q Consensus 471 ~~~~p~~~~~~~ 482 (638)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 565555443
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.57 E-value=11 Score=27.46 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006627 391 ALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMER 470 (638)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 470 (638)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||...|.+|.. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667666666666542 22222222445677888999998888888888888877654 356777777777767776
Q ss_pred cCCCCcHHHHH
Q 006627 471 SGVKPNGITFI 481 (638)
Q Consensus 471 ~~~~p~~~~~~ 481 (638)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555443
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.36 E-value=14 Score=41.65 Aligned_cols=52 Identities=4% Similarity=-0.079 Sum_probs=26.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 006627 448 MMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMV 504 (638)
Q Consensus 448 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 504 (638)
++..+...+.++.+.++... .+-++..-..+..++...|++++|.++|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44445555555555443322 12233333344555666666666666666654
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.13 E-value=27 Score=29.74 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 006627 409 VDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACS 488 (638)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 488 (638)
++..+-...+.++.+.+..+....+.+.+..++...-...+.++...++. ++...+..+.+ .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444444555555443333333333344444444444444444442 23333333331 344444444444444
Q ss_pred ccCcHHHHHHHHHHHh
Q 006627 489 HAGLVTEGKSVFDKMV 504 (638)
Q Consensus 489 ~~~~~~~a~~~~~~~~ 504 (638)
+.+. ..+...+..+.
T Consensus 169 ~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHCS-HHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHH
Confidence 4443 23333333333
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.39 E-value=7 Score=30.29 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006627 460 EALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVD 521 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 521 (638)
+..+-++.+....+-|++......+++|.+.+|+..|.++++-++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 44455566666778899999999999999999999999999888764 3444556766653
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.32 E-value=16 Score=30.79 Aligned_cols=46 Identities=9% Similarity=-0.023 Sum_probs=23.9
Q ss_pred hHHHHHHHHhC---CCCC-CHhhHHHHHHHHhhcCChHHHHHHHHHHhcc
Q 006627 529 LDEAHEMIKSM---PLRP-NMIVWGALLAASKLHKNPSMGEIAATQILEI 574 (638)
Q Consensus 529 ~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 574 (638)
..++.++|..| ++-- -...|......+...|++++|..+|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44555555544 2221 2344455555555566666666666666653
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.14 E-value=61 Score=33.29 Aligned_cols=338 Identities=9% Similarity=-0.075 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccC
Q 006627 210 AIATALIDMYSKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVG 289 (638)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 289 (638)
.....-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| ......+..++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3344555666677777777776665 33333444455666777777777777666665544 233445555666655544
Q ss_pred Chhh--HHHHHHHHHHhc-----------CCCchh-hHHHHHHHHHhcCChHHHHHHHhcCCCCCch---hHHHHHHHHH
Q 006627 290 GLQL--GKWLHAYILRNG-----------FEFSLA-MANALVDMYGKCREIRSARTLFDGMKSKDVM---IWNAVISAYA 352 (638)
Q Consensus 290 ~~~~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~ 352 (638)
.+.. ...-++.+...| ++++.. ....++..+ .+...+........ ++.. .+...+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTTG-ATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhccC-CChhhHHHHHHHHHHHH
Confidence 4322 122222222221 111111 111111111 12223333332221 1111 1111223333
Q ss_pred hcCCHHHHHHHHHHHHHcCcCCChhhHH----HHHHHHhccCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 006627 353 QAHCIDKAFELFIHMKVSKVRPNEVTMV----GLLSLCTEAGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVN 428 (638)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 428 (638)
+ .+.+.|...+......+ ..+..... .+.......+...++...+....... .+.....-.+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHH
Confidence 3 36788888888776543 22322222 22223344443445555555544332 33333334444455678888
Q ss_pred HHHHHHHcCCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhh
Q 006627 429 GAYRLFSEAIYRDI---CMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 429 ~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
.|...|+.+..... ...-=+..++...|+.++|..+|+++... .+ .|..+... +.|..-. . .
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa~--~Lg~~~~-------~-~ 367 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYE-------L-K 367 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCC-------C-C
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCC-------C-C
Confidence 88888888875321 11222344666778888888888887642 11 23322211 1121000 0 0
Q ss_pred hcCCCCC-h-----hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHh
Q 006627 506 GLGLVPK-I-----EHYGCMVDLLGRAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQIL 572 (638)
Q Consensus 506 ~~~~~p~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 572 (638)
.....+. . ..--.-+..+...|....|...+.......+......+.......|....++....+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~ 440 (618)
T 1qsa_A 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (618)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0000010 0 01112244566778888888777665222333444445555566777777776665443
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.17 E-value=8.4 Score=29.89 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCC
Q 006627 90 GKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMP 133 (638)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 133 (638)
..+-++.+...++-|++.+..+.+++|-+.+|+..|.++|+-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.91 E-value=18 Score=26.34 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=65.6
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627 85 LMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMR 164 (638)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (638)
...++|..|-+.+...+- ...+--..+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 467889999998887763 44444444566788999999999999999999999877654 47888888888888887
Q ss_pred HCCCcCCHhhH
Q 006627 165 FMDIRPSEVAM 175 (638)
Q Consensus 165 ~~~~~p~~~t~ 175 (638)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 776 4554444
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.28 E-value=18 Score=26.28 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=64.2
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006627 85 LMTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRGYHRGGLPEEALEVMREMR 164 (638)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (638)
...++|..|-+.+...+- ...+--..+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 467889999998887763 44444444566788999999999999999999999877755 46677777777777777
Q ss_pred HCCCcCCHhhH
Q 006627 165 FMDIRPSEVAM 175 (638)
Q Consensus 165 ~~~~~p~~~t~ 175 (638)
.+| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 765 4554444
No 273
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=77.24 E-value=32 Score=31.54 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=44.1
Q ss_pred HHHhCCCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006627 535 MIKSMPLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKE 607 (638)
Q Consensus 535 ~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (638)
+|...+++|. ..++...+....+.+|+..|..+.++++++.|.. ...++|.+++..-.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADS 255 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHT
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhc
Confidence 3444466775 4566778888999999999999999999999952 244557777776654
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.39 E-value=39 Score=28.65 Aligned_cols=167 Identities=17% Similarity=0.087 Sum_probs=82.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhc
Q 006627 309 SLAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTE 388 (638)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (638)
+..+-...+..+.+.+..+....+.+.+.+++...-...+.++...++.+ +...+.++.. .++...-...+.++.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333444444444444444444444444455544444555555555432 3333333322 3444444455555555
Q ss_pred cCchHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 006627 389 AGALEMGKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDM 468 (638)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 468 (638)
.++.+....+. .+.+ .++..+-...+.++.+.|..+....+.+-+..++...-...+.++...+. .++...+..+
T Consensus 108 ~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 108 IGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp HCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHH-HHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 55543322222 2222 45666666667777777765544444454555666666666677776665 4556666666
Q ss_pred HHcCCCCcHHHHHHHHHHH
Q 006627 469 ERSGVKPNGITFIGLLNAC 487 (638)
Q Consensus 469 ~~~~~~p~~~~~~~l~~~~ 487 (638)
.+. ++...-...+.++
T Consensus 183 l~d---~~~~vr~~A~~aL 198 (211)
T 3ltm_A 183 AET---GTGFARKVAVNYL 198 (211)
T ss_dssp HHH---CCHHHHHHHHHHH
T ss_pred HhC---CCHHHHHHHHHHH
Confidence 553 3444433333333
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=72.12 E-value=43 Score=28.10 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 006627 310 LAMANALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHC 356 (638)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 356 (638)
..+-...+..+...+..+....+.+.+.+++...-...+.++...+.
T Consensus 28 ~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 28 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 33333344444444443333344444444444433333444444443
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.85 E-value=22 Score=34.64 Aligned_cols=95 Identities=11% Similarity=-0.048 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHcCCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCcHHHH--
Q 006627 412 ILKTALVDMYAKCGDVNGAYRLFSEAIY------RDICMWNAMMAGYGMHGCGEEALIFFVDMER---SGVKPNGITF-- 480 (638)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~-- 480 (638)
.+...+.+.|.+.|+++.|.+.+.++.. .-...+...++.+...+++..+...+.+... .+-.|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4567788888889999988888877652 1235667777888888888888888887654 2323333221
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhhh
Q 006627 481 IGLLNACSHAGLVTEGKSVFDKMVHG 506 (638)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 506 (638)
..-...+...+++..|.+.|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222345677888888877777664
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.38 E-value=37 Score=27.19 Aligned_cols=46 Identities=4% Similarity=-0.093 Sum_probs=29.7
Q ss_pred HHHHHHHHhc--cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 564 GEIAATQILE--IEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 564 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
+..+|+.+.. +.-..+..|...+..+...|++.+|..+|+.=.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5666666655 333456667777777777777777777777655443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.39 E-value=19 Score=35.10 Aligned_cols=96 Identities=13% Similarity=-0.098 Sum_probs=63.7
Q ss_pred hcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc--ccHHHHHHHHHcccCchHHHHHHHHHHHhC-CCCChhHHH---
Q 006627 37 TRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDN--FTIPTILKACAQVLMTHLGKEIHGFAIKNG-LDGDAYVSN--- 110 (638)
Q Consensus 37 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~--- 110 (638)
.++..+...|.+.|+++.|.+.|.++...-..+.. ..+..+++.+...+++..+......+...- -.++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 57777888888889999999988888775333322 467777888888889998888888875432 122322221
Q ss_pred -HHHHhhhcCCChhHHHHHhccC
Q 006627 111 -ALIQMYSECGSLVSARYLFDEM 132 (638)
Q Consensus 111 -~li~~~~~~~~~~~a~~~~~~~ 132 (638)
.-...+...+++..|-..|-+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 1122234567888887776543
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.29 E-value=62 Score=28.76 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=11.0
Q ss_pred cCChhhHHHHHHHHHHhcCCCc
Q 006627 288 VGGLQLGKWLHAYILRNGFEFS 309 (638)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~ 309 (638)
.++......+.+.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3444444555555555555443
No 280
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=67.96 E-value=48 Score=27.00 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=33.9
Q ss_pred hcCChHHHHHHHHHHhc-----------------cCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 557 LHKNPSMGEIAATQILE-----------------IEPQNYG-YNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 557 ~~~~~~~A~~~~~~~~~-----------------~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
..+++..|...++.+++ .+|.|.+ .+..++.++...|+.++|++++..-
T Consensus 74 klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 74 KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 44555555555555552 3454443 5778999999999999999998743
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.31 E-value=74 Score=28.20 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=24.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcccH--HHHHHHHHHhcCCHHHHHHHHH
Q 006627 388 EAGALEMGKWLHTYIEKQGLEVDVIL--KTALVDMYAKCGDVNGAYRLFS 435 (638)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~ 435 (638)
..++......+.+.+.+.|..++... -...+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444556666666665554321 1122334445566666665555
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.96 E-value=45 Score=27.12 Aligned_cols=31 Identities=3% Similarity=-0.052 Sum_probs=16.8
Q ss_pred HhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 545 MIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
...|......+...|++.+|..+|+..++..
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444555555566666666666665533
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.13 E-value=63 Score=27.01 Aligned_cols=148 Identities=13% Similarity=0.047 Sum_probs=62.9
Q ss_pred HHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcc
Q 006627 332 LFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEMGKWLHTYIEKQGLEVDV 411 (638)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (638)
+++.+..++...-...+..+...+..+. ...+.++.. .++...-...+.++...+..+....+.+ +.. .++.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~ 90 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDG 90 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCH
Confidence 3344444555555555555555554322 222222222 2344333344444444444322222222 211 3455
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 006627 412 ILKTALVDMYAKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAG 491 (638)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 491 (638)
.+-...+.++.+.+..+....+.+.+..++...-...+.++...++. .+...+..+.. .++...-...+.++...|
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 55555555566555544444444444444544444445555554442 23333333332 234444444444444444
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.04 E-value=39 Score=29.52 Aligned_cols=40 Identities=10% Similarity=-0.103 Sum_probs=28.4
Q ss_pred ChhHHHHhhhhhhcHHHHHHHHHhCCCchhHHHHHHHHHH
Q 006627 25 FKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRK 64 (638)
Q Consensus 25 ~~~~A~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 64 (638)
+.+...+.+.++...-.-++.+....++++|++++++..+
T Consensus 7 ~~~~~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 7 DMSSTAQRLKFLDEGVEEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcccchhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555555555566677888888899999888887754
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.93 E-value=70 Score=27.00 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627 456 GCGEEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512 (638)
Q Consensus 456 ~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 512 (638)
++..++.++|..|..+|+--.. ..|......+...|++.+|.++|+.-++. +-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3456888888888888766544 56777777788888888888888888875 66664
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.03 E-value=37 Score=31.12 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCcCCChhh
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHC--IDKAFELFIHMKVSKVRPNEVT 378 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~ 378 (638)
..++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 5678888888999999999999987622 223333344444333 4556788888877765544433
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.82 E-value=47 Score=25.74 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=38.4
Q ss_pred hhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCC--chhHHHHHHHHHHCCC
Q 006627 13 TRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNK--PSSALNIYAFMRKNGS 67 (638)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~ 67 (638)
.+.+++-|...|+.++|.+.++++ ..+..+..++-+.+. .+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 457888899999999999999998 333344444444432 3567778888876654
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.17 E-value=35 Score=33.80 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh--hH-HHHHHHHHHhcCChHHHHHHHHhC
Q 006627 478 ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI--EH-YGCMVDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~ 539 (638)
..++.+++.|...+.++.|..+..+..--....++. .. +..++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 457778888888888888888888774100001121 12 224566777788888888887765
No 289
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.33 E-value=2.1e+02 Score=29.58 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHh
Q 006627 214 ALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIR 252 (638)
Q Consensus 214 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 252 (638)
.++-.+.++|++++|.++.++... .-...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 356667788999999888876643 111356666666653
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.67 E-value=43 Score=33.21 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----H--hhH-HHHHHHHhhcCChHHHHHHHHHHhccCCCCc
Q 006627 513 IEHYGCMVDLLGRAGLLDEAHEMIKSMPLRPN----M--IVW-GALLAASKLHKNPSMGEIAATQILEIEPQNY 579 (638)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 579 (638)
...++.+++.|...+.++.|..++.+..++.. . ..| ..++..+...+++.+|.+.+..++..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35677888888888899999999888753322 1 122 2334556678888888888888888877654
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.09 E-value=1.2e+02 Score=26.59 Aligned_cols=91 Identities=7% Similarity=-0.020 Sum_probs=44.5
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCcCCHhh-------HHHHHHHh--cccCchHHHHHHHHHHHHhcc-------CC-CCc
Q 006627 146 GYHRGGLPEEALEVMREMRFMDIRPSEVA-------MISMVSLF--ADVADVDLGKAIHACVVRNCK-------DE-KLG 208 (638)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~-------~~-~~~ 208 (638)
..++.|+.+....+++.+.+.|..++... .+.|..+. ++.|+.+.++.+++.-...+. .. ..+
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34556777776666666666554444222 22233222 255666666666655432110 00 001
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 006627 209 VAIATALIDMYSKCGNLAYAKQLFNRLNQ 237 (638)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 237 (638)
..-. ..+...+..|+.+-+.-+++.-..
T Consensus 91 ~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 91 YRGQ-TALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp EESB-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCC-CHHHHHHHcCCHHHHHHHHhCCCC
Confidence 1111 223444566887777777775443
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.78 E-value=1.4e+02 Score=32.78 Aligned_cols=85 Identities=7% Similarity=-0.231 Sum_probs=43.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCC-----------------
Q 006627 483 LLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGLLDEAHEMIKSM--PLRP----------------- 543 (638)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p----------------- 543 (638)
++..|...|.++-+.++ .. -.+.++..-..++.+|...|++++|.+.|+++ ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL----~~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQL----IG--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHH----GG--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHH----Hh--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 44445555555544332 22 22233333334555666666666666666665 1111
Q ss_pred ------CHhhHHHHHHHHhhcCChHHHHHHHHHHhc
Q 006627 544 ------NMIVWGALLAASKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 544 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 573 (638)
....|..++..+.+++-++-+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 112445555556666677777777777765
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.40 E-value=39 Score=27.12 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=38.1
Q ss_pred hhhHHHhhhhcCChhHHHHhhhhh--------hcHHHHHHHHHhCCC--chhHHHHHHHHHHCCC
Q 006627 13 TRQCHAHIIKTHFKFSYTNIINPL--------TRYNSLVTSYIKNNK--PSSALNIYAFMRKNGS 67 (638)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~ 67 (638)
.+.+++-|...|+.++|.+.++++ ..+..+..++-+.+. .+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 457888899999999999999998 333344444444322 4457777777776654
No 294
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.73 E-value=2.5e+02 Score=28.95 Aligned_cols=44 Identities=30% Similarity=0.454 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCcCCHhhHHHHHHHhc
Q 006627 138 VSWSTMIRGYHRGGLPEEALEVMREMRFMDIRPSEVAMISMVSLFA 183 (638)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 183 (638)
..|- +|-.|.|.|++++|.++.++.... +.--...|...+..++
T Consensus 154 p~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 154 PIWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp EHHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 3453 455667777777777777655421 1111134555555555
No 295
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.56 E-value=1.5e+02 Score=26.28 Aligned_cols=20 Identities=15% Similarity=-0.034 Sum_probs=7.7
Q ss_pred CCCCchhHHHHHHHHHhcCC
Q 006627 337 KSKDVMIWNAVISAYAQAHC 356 (638)
Q Consensus 337 ~~~~~~~~~~li~~~~~~~~ 356 (638)
.+++...-...+.++...++
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC--
T ss_pred hCCCHHHHHHHHHHHHhcCC
Confidence 33444444444444444443
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.97 E-value=65 Score=27.72 Aligned_cols=31 Identities=3% Similarity=-0.131 Sum_probs=21.1
Q ss_pred HhhHHHHHHHHhhcCChHHHHHHHHHHhccC
Q 006627 545 MIVWGALLAASKLHKNPSMGEIAATQILEIE 575 (638)
Q Consensus 545 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 575 (638)
...|......+...|++++|..+|+..++..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555666666667777777777777777644
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.88 E-value=1e+02 Score=25.44 Aligned_cols=16 Identities=0% Similarity=0.088 Sum_probs=8.6
Q ss_pred hcCCChhHHHHHhccC
Q 006627 117 SECGSLVSARYLFDEM 132 (638)
Q Consensus 117 ~~~~~~~~a~~~~~~~ 132 (638)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3445556555555543
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.36 E-value=54 Score=27.40 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=27.2
Q ss_pred HHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 006627 552 LAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAG 600 (638)
Q Consensus 552 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 600 (638)
+..|.+.|.+++|.+++++.++.+|.+...-..|..+-.+.+-+....+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 3456777777777777777777666666666666555555554444433
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.10 E-value=84 Score=27.40 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=13.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 006627 247 ISGYIRCNEINEGVRLFAEMIE 268 (638)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~ 268 (638)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666666666666665543
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.08 E-value=1.3e+02 Score=24.10 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCC
Q 006627 459 EEALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPK 512 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 512 (638)
+++.++|..|..+|+--.. ..|......+...|++.+|.++|+.-++. +-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3477888888887765544 45777777788888888888888888775 66664
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.01 E-value=1.6e+02 Score=25.16 Aligned_cols=26 Identities=4% Similarity=-0.229 Sum_probs=13.5
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCcCC
Q 006627 146 GYHRGGLPEEALEVMREMRFMDIRPS 171 (638)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~p~ 171 (638)
..++.|+.+-+..+++.+.+.|..++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34455666655555555555444433
No 302
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.98 E-value=58 Score=32.36 Aligned_cols=57 Identities=9% Similarity=-0.092 Sum_probs=41.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006627 550 ALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMK 606 (638)
Q Consensus 550 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (638)
.++.........+.|...|.++..+.|++...|..||.+....|+.-+|.=+|-+-.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344444445567788888888888888888888888888888888877776555443
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.79 E-value=1.6e+02 Score=25.14 Aligned_cols=25 Identities=8% Similarity=-0.152 Sum_probs=12.2
Q ss_pred HHHhCCChHHHHHHHHHHHHcCccC
Q 006627 249 GYIRCNEINEGVRLFAEMIEENVFP 273 (638)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p 273 (638)
..+..|+.+.+..+++.+.+.|..+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3344555555555555444444333
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.56 E-value=73 Score=27.94 Aligned_cols=54 Identities=7% Similarity=-0.142 Sum_probs=30.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCccCChHh-------HHHHHHHhc--ccCChhhHHHHHHHH
Q 006627 248 SGYIRCNEINEGVRLFAEMIEENVFPSEIT-------ILSLIIECG--FVGGLQLGKWLHAYI 301 (638)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 301 (638)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+.+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344556777777777776666665555332 233333332 567777666666554
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.50 E-value=1.4e+02 Score=25.44 Aligned_cols=23 Identities=0% Similarity=-0.152 Sum_probs=13.0
Q ss_pred HHHHhcccCChhhHHHHHHHHHH
Q 006627 281 LIIECGFVGGLQLGKWLHAYILR 303 (638)
Q Consensus 281 ll~~~~~~~~~~~a~~~~~~~~~ 303 (638)
.+......|+...+.++.+.+.+
T Consensus 213 ~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 213 PLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445556666666666665543
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.53 E-value=93 Score=28.49 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhc-----
Q 006627 452 YGMHGCGEEALIFFVDMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRA----- 526 (638)
Q Consensus 452 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 526 (638)
+...|++++|+..|+... +...+.......+.+++.+++....+ .+...-++.-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icre--------Yilal~iEl~Rr~l~~~~ 173 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICRE--------YIVGLSMETERKKLPKET 173 (320)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCCCS
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcccCC
Q ss_pred ----CChHHHHHHHHhCCCCCC--HhhHHHHHHHHhhcCChHHHHHHHHHHhccCCC
Q 006627 527 ----GLLDEAHEMIKSMPLRPN--MIVWGALLAASKLHKNPSMGEIAATQILEIEPQ 577 (638)
Q Consensus 527 ----g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 577 (638)
.+--|-..+|...+++|. ..++...+....+.+|+..|-.+.++++++.|.
T Consensus 174 ~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 174 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.23 E-value=1.8e+02 Score=26.52 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCc
Q 006627 344 WNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG--ALEMGKWLHTYIEKQGLEVD 410 (638)
Q Consensus 344 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 410 (638)
...++.-|...|+.++|.+.++++......+ ......+..++-+.+ ..+....++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4567777888888888888888775211111 112223334444432 24555666777766664433
No 308
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=36.80 E-value=40 Score=21.79 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=29.1
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcCCC
Q 006627 565 EIAATQILEIEPQNYGYNVLMSNIYAVANRWNDVAGVRRVMKEIRVKKEP 614 (638)
Q Consensus 565 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 614 (638)
....+.+.++.|+- .....-.-+-...|+.+.|+..+-.|.....+++.
T Consensus 10 ee~l~~L~emFP~l-d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 34445556667763 22222223345567888888888888766665554
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.72 E-value=1.5e+02 Score=23.62 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCcCCCh
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHC--IDKAFELFIHMKVSKVRPNE 376 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 376 (638)
..++.-|...|+.++|...++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 5677788888899999988888876522 223334444444322 34567777777766654433
No 310
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.18 E-value=1.6e+02 Score=27.43 Aligned_cols=49 Identities=22% Similarity=0.051 Sum_probs=20.8
Q ss_pred HhcCChHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006627 220 SKCGNLAYAKQLFNRLNQNSVVSWTVMISGYIRCNEINEGVRLFAEMIE 268 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (638)
+..|+.+-+.-+++.-...+...-.+.+...+..|+.+-+..+++.-..
T Consensus 61 ~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 61 CKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp HHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccc
Confidence 3445555555554443332221111223333445665555555554333
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.01 E-value=1.7e+02 Score=23.66 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCCh
Q 006627 460 EALIFFVDMERSGVKPNG-ITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKI 513 (638)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 513 (638)
...++|..|..+|+--.. ..|......+...|++.+|.++|+.-++. +-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 366778888887765544 45777777777888888888888888875 666643
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.79 E-value=2.4e+02 Score=25.13 Aligned_cols=77 Identities=13% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCC
Q 006627 214 ALIDMYSKCGNLAYAKQLFNRLNQ---NSVVSWTVMISGYIRCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGG 290 (638)
Q Consensus 214 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 290 (638)
..+...+..|+.+-+.-+++.-.. .+..-++..+...+..|+. ++.+.+.+.|..|+.... ..+..|+
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~ 233 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDD 233 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTC
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCC
Confidence 334444566666666665544221 2222222222333344543 344555666766666542 2244555
Q ss_pred hhhHHHHHH
Q 006627 291 LQLGKWLHA 299 (638)
Q Consensus 291 ~~~a~~~~~ 299 (638)
.+.+..+++
T Consensus 234 ~~iv~~Ll~ 242 (285)
T 3kea_A 234 AEIAKMIIE 242 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444433
No 313
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=35.47 E-value=6.9 Score=29.61 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=40.2
Q ss_pred hhhcCChhHHHHhhhhhhcHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHcccCchHH
Q 006627 20 IIKTHFKFSYTNIINPLTRYNSLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVLMTHLG 90 (638)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 90 (638)
|.+++++++++.+..+=..|.-.|..-+.+++.+-|.++++...+.| +...|.+.|-.|...=+++.+
T Consensus 16 ykkN~rw~qSI~L~KkDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvV 83 (125)
T 3qil_A 16 PRGSHMWKQSVELAKKDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 83 (125)
T ss_dssp SSSCCCCSSCCCCCSCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHH
T ss_pred hhccccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHH
Confidence 44555666665555444556666666666777777777777776654 444555666555554444443
No 314
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.40 E-value=3e+02 Score=26.27 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=8.1
Q ss_pred HHhcCChHHHHHHHhc
Q 006627 219 YSKCGNLAYAKQLFNR 234 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~ 234 (638)
.+..|+.+....+++.
T Consensus 120 A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 120 AAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3444555555555544
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.08 E-value=1.9e+02 Score=24.91 Aligned_cols=59 Identities=7% Similarity=0.128 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhCCCCC-hhHHHHHHHhhhcCCChhHHHHHhccCCCCCcchHHHHHHH
Q 006627 88 HLGKEIHGFAIKNGLDGD-AYVSNALIQMYSECGSLVSARYLFDEMPNRDVVSWSTMIRG 146 (638)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 146 (638)
+....+|..|...||--. ...|......+-..|++.+|..+|+.-.+........|...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 190 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQK 190 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 455666666666665433 44555666666666777777777766554444444444433
No 316
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=32.57 E-value=68 Score=33.33 Aligned_cols=63 Identities=14% Similarity=-0.004 Sum_probs=49.6
Q ss_pred hHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 006627 529 LDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPSMGEIAATQILEIEPQNYGYNVLMSNIYAVANR 594 (638)
Q Consensus 529 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 594 (638)
.+.|.++++-|+ ...............|++..|.++.+.++..+|+|..+..+++.+|.+.|-
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 356677777775 344444455666788999999999999999999999999999999888773
No 317
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.44 E-value=1.7e+02 Score=22.49 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCcCCCh
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHC--IDKAFELFIHMKVSKVRPNE 376 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 376 (638)
..++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 5677778888889999888888876522 223334444444432 35677777777766654433
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.17 E-value=2.6e+02 Score=24.90 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=6.4
Q ss_pred hcCCHHHHHHHHHc
Q 006627 423 KCGDVNGAYRLFSE 436 (638)
Q Consensus 423 ~~~~~~~A~~~~~~ 436 (638)
..|+.+-+.-+++.
T Consensus 204 ~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 204 DNKDIEMLQALFKY 217 (285)
T ss_dssp HHTCHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHc
Confidence 34554444444444
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.75 E-value=1.5e+02 Score=27.70 Aligned_cols=16 Identities=0% Similarity=-0.066 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHHc
Q 006627 421 YAKCGDVNGAYRLFSE 436 (638)
Q Consensus 421 ~~~~~~~~~A~~~~~~ 436 (638)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3455666655555554
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.64 E-value=2.3e+02 Score=23.79 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=38.7
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCC-----hhhHHHHHHHHHHhcC
Q 006627 243 WTVMISGYIR---CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGG-----LQLGKWLHAYILRNGF 306 (638)
Q Consensus 243 ~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 306 (638)
.-.+|+++.+ ..+.+.|+-++-.|.+.| .|....=..++.+....|. +..+...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3345566554 589999999999999999 6655555555555555553 2333444444444454
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.68 E-value=1.3e+02 Score=20.59 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=37.9
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccc-CchHHHHHHHHHHHhCCCCChhHHHHHHHhhhcCCC
Q 006627 60 AFMRKNGSEVDNFTIPTILKACAQVL-MTHLGKEIHGFAIKNGLDGDAYVSNALIQMYSECGS 121 (638)
Q Consensus 60 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 121 (638)
+.+.+.|+.++.. -..++..+...+ ..-.+.++.+.+.+.+...+..+....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~-r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455667665543 345566665554 566677888888777655666666666666666554
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.67 E-value=1.7e+02 Score=23.97 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=6.7
Q ss_pred hcCCChhHHHHHh
Q 006627 117 SECGSLVSARYLF 129 (638)
Q Consensus 117 ~~~~~~~~a~~~~ 129 (638)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 4445555555555
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.58 E-value=2.1e+02 Score=24.14 Aligned_cols=19 Identities=5% Similarity=-0.087 Sum_probs=10.1
Q ss_pred HHhhhhcCChhHHHHhhhh
Q 006627 17 HAHIIKTHFKFSYTNIINP 35 (638)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~ 35 (638)
+...++.|+.+....+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3444455666655555543
No 324
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=28.81 E-value=1.6e+02 Score=25.30 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=44.6
Q ss_pred cccCCc-chHhhhhHHHhhhhcCChhHHHHhhhhh-hcHHHHHHHHHhCCCc-hhHHHHHHHHHHCCCCCCcccHHHHHH
Q 006627 3 IKNGFL-NLEQTRQCHAHIIKTHFKFSYTNIINPL-TRYNSLVTSYIKNNKP-SSALNIYAFMRKNGSEVDNFTIPTILK 79 (638)
Q Consensus 3 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~ 79 (638)
++.|.+ +...+..+........-...|..++..- .+-..|-.-+.+.|-. +.+..+++.+.+.|.--|..--...++
T Consensus 40 L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~ 119 (221)
T 3d5l_A 40 LMKGTELDEKQIAAIATADQQAKAYSRMLDYLSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVR 119 (221)
T ss_dssp CCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 334444 5555555444333222233333333322 4444555555555533 334456666666665444433334444
Q ss_pred HHHcccCchHHHHHHHHHHHhCCC
Q 006627 80 ACAQVLMTHLGKEIHGFAIKNGLD 103 (638)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~ 103 (638)
...+.+.+ ....+-..+...|++
T Consensus 120 ~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 120 TMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHhccc-cHHHHHHHHHHcCCC
Confidence 33332221 234455555666654
No 325
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.62 E-value=3.9e+02 Score=25.46 Aligned_cols=21 Identities=5% Similarity=-0.240 Sum_probs=11.5
Q ss_pred hHHHhhhhcCChhHHHHhhhh
Q 006627 15 QCHAHIIKTHFKFSYTNIINP 35 (638)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~ 35 (638)
..+...+..|+++-...+++.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR 36 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHc
Confidence 344444566666666555543
No 326
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.42 E-value=2e+02 Score=24.34 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=9.9
Q ss_pred HHhhhcCCChhHHHHHhccC
Q 006627 113 IQMYSECGSLVSARYLFDEM 132 (638)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~~ 132 (638)
+...++.|+.+-+..+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33444555555555555443
No 327
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.37 E-value=2.7e+02 Score=23.44 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCc-----hHHHHHHHHHHHHhCCC
Q 006627 346 AVISAY---AQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGA-----LEMGKWLHTYIEKQGLE 408 (638)
Q Consensus 346 ~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 408 (638)
.+|++| .+..+++.|+-.+-+|.+.| .|....-..++.+...-|. ...|...++.....|.|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344554 45688999999999999999 6655555555555554442 34445555666666643
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.33 E-value=2.8e+02 Score=23.64 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCCcH--HHHH-----HHHHHHhccCcHHHHHHHHHHHhh
Q 006627 459 EEALIFFVDMERSGVKPNG--ITFI-----GLLNACSHAGLVTEGKSVFDKMVH 505 (638)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~--~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~ 505 (638)
+.|+.+|+.+.+...-|+. .... ..+..|.+.|.+++|.+++++...
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 5566677766655322222 1111 233457888888888888888864
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.00 E-value=2.4e+02 Score=23.72 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=5.8
Q ss_pred hcCChHHHHHHHh
Q 006627 221 KCGNLAYAKQLFN 233 (638)
Q Consensus 221 ~~g~~~~A~~~~~ 233 (638)
..|+.+-+..+++
T Consensus 148 ~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 148 AKGNLKMVHILLF 160 (231)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444443
No 330
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.42 E-value=2.8e+02 Score=23.36 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=7.8
Q ss_pred HhcCChHHHHHHHhc
Q 006627 220 SKCGNLAYAKQLFNR 234 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~ 234 (638)
++.|+.+....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 445555555555543
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.12 E-value=2.2e+02 Score=23.87 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccC
Q 006627 245 VMISGYI---RCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVG 289 (638)
Q Consensus 245 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 289 (638)
.+|+++. +..+.+.|+-++-.|.+.|-.|....=..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 45889999999999999987776555555555554444
No 332
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.09 E-value=2.6e+02 Score=23.44 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccC
Q 006627 347 VISAY---AQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAG 390 (638)
Q Consensus 347 li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 390 (638)
+|++| .+..+++.|+-.+-+|.+.|-.|....-..++.+...-|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44444 456789999999999999886666555555555544433
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.04 E-value=2.6e+02 Score=23.44 Aligned_cols=28 Identities=4% Similarity=-0.014 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006627 582 NVLMSNIYAVANRWNDVAGVRRVMKEIR 609 (638)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (638)
-....-+|.+.|.+++|.+++++.-...
T Consensus 120 k~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 120 KIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 3455678999999999999999975444
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.78 E-value=1.3e+02 Score=23.72 Aligned_cols=16 Identities=6% Similarity=-0.062 Sum_probs=6.5
Q ss_pred CCchHHHHHHHHhHHC
Q 006627 151 GLPEEALEVMREMRFM 166 (638)
Q Consensus 151 ~~~~~a~~~~~~m~~~ 166 (638)
+..-.|.++++.+.+.
T Consensus 35 ~~~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 35 MAHPTADDIYKALEGK 50 (145)
T ss_dssp SSCCCHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3333444444444433
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.75 E-value=2.9e+02 Score=23.34 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=7.8
Q ss_pred HHhcCChHHHHHHHhc
Q 006627 320 YGKCREIRSARTLFDG 335 (638)
Q Consensus 320 ~~~~~~~~~A~~~~~~ 335 (638)
....|+...+..+.+.
T Consensus 217 A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKA 232 (237)
T ss_dssp SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554443
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.92 E-value=2.1e+02 Score=23.05 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=33.5
Q ss_pred cCChHHHHHHHHhC-CC--CC--CHhhHHHHHH-H-----HhhcCChHHHHHHHHHHhc
Q 006627 526 AGLLDEAHEMIKSM-PL--RP--NMIVWGALLA-A-----SKLHKNPSMGEIAATQILE 573 (638)
Q Consensus 526 ~g~~~~A~~~~~~~-~~--~p--~~~~~~~l~~-~-----~~~~~~~~~A~~~~~~~~~ 573 (638)
.|++-+|-++++.. .. .| ....|..|++ . ..+.||...|..++.++..
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 38888888888776 21 23 3455666666 2 2468999999999999977
No 337
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.21 E-value=5.5e+02 Score=27.80 Aligned_cols=160 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHhcccCch---HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcCChHHHHHHHhccCC-CCcccHHHHHHHHH
Q 006627 176 ISMVSLFADVADV---DLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCGNLAYAKQLFNRLNQ-NSVVSWTVMISGYI 251 (638)
Q Consensus 176 ~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~ 251 (638)
..++...|..|+. +.|...|......+...+..+.........-.+.|..++-..+++.... .+..--..++.++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~ 769 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALA 769 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhC
Q ss_pred hCCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCChhhHHHHHHH---HHHhcCCCchhhHHHHHHHHHhcCChHH
Q 006627 252 RCNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGGLQLGKWLHAY---ILRNGFEFSLAMANALVDMYGKCREIRS 328 (638)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (638)
...+.....++++................+..........+.+.+.+.. .+...+......+..++......-.-++
T Consensus 770 ~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~ 849 (909)
T 4fke_A 770 CSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEF 849 (909)
T ss_dssp TCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHH
Q ss_pred HHHHHhc
Q 006627 329 ARTLFDG 335 (638)
Q Consensus 329 A~~~~~~ 335 (638)
-.+-++.
T Consensus 850 ~~~~~~~ 856 (909)
T 4fke_A 850 ELQQLEQ 856 (909)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.06 E-value=1.7e+02 Score=22.91 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=32.1
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627 467 DMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL 528 (638)
Q Consensus 467 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 528 (638)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 35556666655432 2233333445556667777777654 444455555555566666654
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.05 E-value=3.5e+02 Score=23.74 Aligned_cols=23 Identities=9% Similarity=-0.221 Sum_probs=10.1
Q ss_pred HHHhhcCChHHHHHHHHHHhccCC
Q 006627 553 AASKLHKNPSMGEIAATQILEIEP 576 (638)
Q Consensus 553 ~~~~~~~~~~~A~~~~~~~~~~~p 576 (638)
.+....|+ ..+...+.++++..+
T Consensus 243 ~aL~~i~~-~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 243 EAAGELGD-KTLLPVLDTMLYKFD 265 (280)
T ss_dssp HHHHHHCC-GGGHHHHHHHHTTSS
T ss_pred HHHHhcCc-hhhhHHHHHHHhcCC
Confidence 33344444 244455555554333
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.91 E-value=1e+02 Score=23.81 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHHccc
Q 006627 41 SLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACAQVL 85 (638)
Q Consensus 41 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 85 (638)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555555556666666666666654445555444444444443
No 341
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.85 E-value=4.3e+02 Score=24.70 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCcCCChhhH
Q 006627 314 NALVDMYGKCREIRSARTLFDGMKSKDV---MIWNAVISAYAQAHC--IDKAFELFIHMKVSKVRPNEVTM 379 (638)
Q Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~ 379 (638)
..++.-|...++.++|...++++..|.. .....+..++-+.++ .+.+.+++..+...|+-+.....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5678888889999999999999987632 233444445444333 35677888888777755544433
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.40 E-value=5e+02 Score=25.32 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=20.8
Q ss_pred HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006627 403 EKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEA 437 (638)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 437 (638)
.+.|++--...|..-.+.+...|++++|.++--..
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34455444455555566667777777777665443
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.27 E-value=1.8e+02 Score=23.44 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=44.4
Q ss_pred hhHHHHHHH-HHHCCCCCCcccHHHHHHHHHcccCchHHHHHHHHHHHh--CCCCChhHHHHHHHhhhcCCCh
Q 006627 53 SSALNIYAF-MRKNGSEVDNFTIPTILKACAQVLMTHLGKEIHGFAIKN--GLDGDAYVSNALIQMYSECGSL 122 (638)
Q Consensus 53 ~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~ 122 (638)
+.+++-+.. +.+.|.+++. .-..++..+...+..-.|.++++.+.+. +...+..+.-.-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 3456766533 4456667777777777888888888877 6666666666666677776644
No 344
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.23 E-value=2.4e+02 Score=24.36 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=49.6
Q ss_pred HHHHHhCCCchhHHHHHHHHHHCCCCCCc-------ccHHHHHHHHHc--ccCchHHHHHHHHHHHhCCCC---------
Q 006627 43 VTSYIKNNKPSSALNIYAFMRKNGSEVDN-------FTIPTILKACAQ--VLMTHLGKEIHGFAIKNGLDG--------- 104 (638)
Q Consensus 43 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~--------- 104 (638)
+...++.|+.+....+++.+.+.|..++. .-.+.|..++.. .|+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34445677888777777777776665543 233344433322 277777777666554433111
Q ss_pred -ChhHHHHHHHhhhcCCChhHHHHHhccCCC
Q 006627 105 -DAYVSNALIQMYSECGSLVSARYLFDEMPN 134 (638)
Q Consensus 105 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 134 (638)
|..-. +.+...+..|+.+-+..+++.-..
T Consensus 86 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 86 EFYQGH-SALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp TTTTTC-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCC-CHHHHHHHcCCHHHHHHHHHcCCC
Confidence 11222 333444566777777777765443
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.63 E-value=95 Score=24.29 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 006627 41 SLVTSYIKNNKPSSALNIYAFMRKNGSEVDNFTIPTILKACA 82 (638)
Q Consensus 41 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 82 (638)
.++..+...+..-.|.++++.+.+.+...+..|....|..+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~ 59 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLA 59 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 344555555555556666666655544444444444444333
No 346
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.59 E-value=84 Score=22.41 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 006627 579 YGYNVLMSNIYAVANRWNDVAGVRRVM 605 (638)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (638)
+..+.-.++.+.+.|+|++|++..++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 345566778888888888887776654
No 347
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.46 E-value=3.2e+02 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHhC
Q 006627 516 YGCMVDLLGRAG-LLDEAHEMIKSM 539 (638)
Q Consensus 516 ~~~l~~~~~~~g-~~~~A~~~~~~~ 539 (638)
...++..+.+.| .++.+..+++.+
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 334444445554 334444444444
No 348
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.23 E-value=3.2e+02 Score=22.32 Aligned_cols=176 Identities=9% Similarity=-0.041 Sum_probs=80.2
Q ss_pred HhcCCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------C-cH-HHHHHHH
Q 006627 422 AKCGDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEALIFFVDMERSGVK---------------P-NG-ITFIGLL 484 (638)
Q Consensus 422 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~---------------p-~~-~~~~~l~ 484 (638)
.-.|.+..++-++.....-...-|.. -+|.+.+++..|+..++.+.+-.+. | |. ..++.+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 33456666655554332222222222 2445566677777776666643332 2 22 3456666
Q ss_pred HHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH-H-hcCChHHHHHHHHhCCCCCCHhhHHHHHHHHhhcCChH
Q 006627 485 NACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLL-G-RAGLLDEAHEMIKSMPLRPNMIVWGALLAASKLHKNPS 562 (638)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 562 (638)
..|.+.|+.++|+..+..-... .|=..+...++--- . ..-+.+..+ ..-........+...........+
T Consensus 122 ~lltq~g~r~EaI~y~~~Sf~~---~~lf~~vEnliyeN~vp~~~d~~~i~---~~~~~~i~~~y~~d~~~lHe~~s~-- 193 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRSFGK---SFLFSPVENLLLENKVPQKRDKENVR---QTGRRGIEEEYVSDSIEFHESLSP-- 193 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHTTCCCCCC--------------CHHHHHHHHHHHHHHHCCH--
T ss_pred HHHHHhcCHHHhhhHhhhhcCC---ccccchHHHHHhhcCCCcccchHHHH---hhhhccchhhhhhhHHHHHHhccH--
Confidence 6777888888888887765432 22211111111000 0 000000000 000000000111111111111111
Q ss_pred HHHHHHHHHhccCCCCcchH-HHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006627 563 MGEIAATQILEIEPQNYGYN-VLMSNIYAVANRWNDVAGVRRVMKEIRV 610 (638)
Q Consensus 563 ~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (638)
+..++..+.-|.-...+ ...+..|...|..++...+|..+++..+
T Consensus 194 ---~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 194 ---SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp ---HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ---HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 55566666777633322 3445567788888888888887776544
No 349
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.17 E-value=1.1e+02 Score=22.11 Aligned_cols=37 Identities=14% Similarity=-0.001 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 006627 425 GDVNGAYRLFSEAIYRDICMWNAMMAGYGMHGCGEEA 461 (638)
Q Consensus 425 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 461 (638)
...+.|.++++.+......+|..++.++...|+...|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3566777777777777777777777777655554444
No 350
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.86 E-value=2.5e+02 Score=22.18 Aligned_cols=60 Identities=8% Similarity=0.157 Sum_probs=29.9
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcCC
Q 006627 467 DMERSGVKPNGITFIGLLNACSHAGLVTEGKSVFDKMVHGLGLVPKIEHYGCMVDLLGRAGL 528 (638)
Q Consensus 467 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 528 (638)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|....+..+...|-
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 34555655554322 2333334444555666666666554 444455555555566665554
No 351
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.72 E-value=1.7e+02 Score=23.12 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhcC
Q 006627 188 VDLGKAIHACVVRNCKDEKLGVAIATALIDMYSKCG 223 (638)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (638)
.-.|.++++.+.+.++.. +..+.-..++.+...|
T Consensus 42 ~~sa~ei~~~l~~~~~~i--s~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 42 HLSPEEITHSIRQKDKNT--SISSVYRILNFLEKEN 75 (150)
T ss_dssp CBCHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCC--CHhhHHHHHHHHHHCC
Confidence 334444444444433333 3333333344444444
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.41 E-value=6.4e+02 Score=27.49 Aligned_cols=128 Identities=12% Similarity=-0.021 Sum_probs=70.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCChhhHHHHHHHHhccCchHH
Q 006627 315 ALVDMYGKCREIRSARTLFDGMKSKDVMIWNAVISAYAQAHCIDKAFELFIHMKVSKVRPNEVTMVGLLSLCTEAGALEM 394 (638)
Q Consensus 315 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (638)
.++..+...|..+-|.++..-+.. ++..--.+..+|...|++++|...|++.. .|+..+...... ...
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~ 882 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LRE 882 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhh
Confidence 366777778888888877666654 44333456778899999999999998753 333322111000 000
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCc----hhHHHHHHHHHhcC
Q 006627 395 GKWLHTYIEKQGLEVDVILKTALVDMYAKCGDVNGAYRLFSEAI----YRDI----CMWNAMMAGYGMHG 456 (638)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~ 456 (638)
...++... +.. .....-|..++..+.+.+-++-+.++-+... ..|. ..|..+..+.+..|
T Consensus 883 ~~~ll~~~-e~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY-HHQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT-TTC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc-ccc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00011000 000 1112356777777777777777766554322 2233 35666666665443
No 353
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.23 E-value=3.1e+02 Score=21.76 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=12.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 006627 247 ISGYIRCNEINEGVRLFAEMIE 268 (638)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~ 268 (638)
+..+++.|+.+.+...+..+..
T Consensus 100 lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 100 FRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555666666665555544
No 354
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.11 E-value=3.8e+02 Score=22.71 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=41.1
Q ss_pred cHHHHHHHHHh---CCChHHHHHHHHHHHHcCccCChHhHHHHHHHhcccCC-----hhhHHHHHHHHHHhcC
Q 006627 242 SWTVMISGYIR---CNEINEGVRLFAEMIEENVFPSEITILSLIIECGFVGG-----LQLGKWLHAYILRNGF 306 (638)
Q Consensus 242 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 306 (638)
.+-.+|+++.+ ..+.+.|+-++-.|.+.|-.|....=..++.+....|. +..|...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 44445666654 58999999999999999877766555555555555543 2333444444444443
No 355
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.02 E-value=5.1e+02 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCC
Q 006627 213 TALIDMYSKCGNLAYAKQLFNRLNQNS 239 (638)
Q Consensus 213 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 239 (638)
..++.-|...++.++|...++++..|.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 566777778888888888888887655
No 356
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.87 E-value=2e+02 Score=22.31 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=6.4
Q ss_pred hcCChHHHHHHHhc
Q 006627 221 KCGNLAYAKQLFNR 234 (638)
Q Consensus 221 ~~g~~~~A~~~~~~ 234 (638)
..|+.+-+.-+++.
T Consensus 110 ~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 110 QEGHTAVVSFLAAE 123 (156)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HhChHHHHHHHHhc
Confidence 34444444444444
No 357
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.56 E-value=79 Score=26.84 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCh-hHHHHH-----HHHHHhcCChHHHHHHHHhC
Q 006627 493 VTEGKSVFDKMVHGLGLVPKI-EHYGCM-----VDLLGRAGLLDEAHEMIKSM 539 (638)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~p~~-~~~~~l-----~~~~~~~g~~~~A~~~~~~~ 539 (638)
.+.|+.+|+.+.+...+..+. .....+ +..+.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 467778888777643222221 112222 23455677777777777765
No 358
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.43 E-value=1.4e+02 Score=24.04 Aligned_cols=59 Identities=5% Similarity=0.040 Sum_probs=29.3
Q ss_pred hHHCCCcCCHhhHHHHHHHhcccCchHHHHHHHHHHHHh--ccCCCCchhHHHHHHHHHHhcCC
Q 006627 163 MRFMDIRPSEVAMISMVSLFADVADVDLGKAIHACVVRN--CKDEKLGVAIATALIDMYSKCGN 224 (638)
Q Consensus 163 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~ 224 (638)
+++.|++++..- ..++..+...+..-.|.++++.+.+. ++.. +..+.-.-++.+.+.|-
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i--s~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV--GIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC--CHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHCCC
Confidence 344455554332 23344444444555566666666555 4443 44444444555555554
No 359
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.12 E-value=2.1e+02 Score=19.42 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=34.0
Q ss_pred HHHHcCccCChHhHHHHHHHhcccC-ChhhHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCC
Q 006627 265 EMIEENVFPSEITILSLIIECGFVG-GLQLGKWLHAYILRNGFEFSLAMANALVDMYGKCRE 325 (638)
Q Consensus 265 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (638)
.|.+.|++++..-. .++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 35556666655443 3444444443 455666777777666655555555555665555543
Done!