BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006628
         (638 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I1K|A Chain A, Structure Of Porcine Torovirus Hemagglutinin-esterase
 pdb|3I1K|B Chain B, Structure Of Porcine Torovirus Hemagglutinin-esterase
 pdb|3I1K|C Chain C, Structure Of Porcine Torovirus Hemagglutinin-esterase
 pdb|3I1L|A Chain A, Structure Of Porcine Torovirus Hemagglutinin-Esterase In
           Complex With Its Receptor
 pdb|3I1L|B Chain B, Structure Of Porcine Torovirus Hemagglutinin-Esterase In
           Complex With Its Receptor
 pdb|3I1L|C Chain C, Structure Of Porcine Torovirus Hemagglutinin-Esterase In
           Complex With Its Receptor
          Length = 377

 Score = 32.3 bits (72), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 166 LFIQQAIKGMVTEFKIPKDEDS-NLDKYQFQWLYTNG----LLGIIFTFGLVYTALKSRK 220
           L I  A+  + T+F +P   D  +  K+   + Y +G    + G+   FG  Y +  S  
Sbjct: 157 LVIFDAVTKLSTQFVLPNSSDGVSCTKHLVPFCYIDGGCFEMSGVCHPFGYYYES-PSFY 215

Query: 221 ARFWWYGTGWLRSFVADYGVPLMVVVWTALSF 252
             F+  GT  L S++ DY + +   V+ A +F
Sbjct: 216 HGFYTNGTAGLHSYICDY-LEMKPGVYNATTF 246


>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
           Of Unknown Function From Thermoplasma Acidophilum
 pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
           Of Unknown Function From Thermoplasma Acidophilum
          Length = 184

 Score = 28.9 bits (63), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 561 ISGAPWRSLSLSFRDKEVPHLCEKEEELEMCDAEILDELTTSRGELKVRNVSFSEERPGL 620
           +S A    + LS R K+  HLC K      C   +L+ +   +GE+KV    F    P  
Sbjct: 131 LSRASITDILLSHRTKDYQHLCPK------CGVGVLEPVYNEKGEIKV----FRCSNPAC 180

Query: 621 VYPE 624
            Y E
Sbjct: 181 DYEE 184


>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
           Fe+2-Bound State
 pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
           Fe+2-Bound State
          Length = 198

 Score = 28.9 bits (63), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 561 ISGAPWRSLSLSFRDKEVPHLCEKEEELEMCDAEILDELTTSRGELKVRNVSFSEERPGL 620
           +S A    + LS R K+  HLC K      C   +L+ +   +GE+KV    F    P  
Sbjct: 145 LSRASITDILLSHRTKDYQHLCPK------CGVGVLEPVYNEKGEIKV----FRCSNPAC 194

Query: 621 VYPE 624
            Y E
Sbjct: 195 DYEE 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,578,922
Number of Sequences: 62578
Number of extensions: 763374
Number of successful extensions: 1584
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 6
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)