Query 006628
Match_columns 638
No_of_seqs 151 out of 572
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bzk_A Protein (BAND 3 anion t 99.7 9.2E-20 3.1E-24 137.9 0.5 43 17-61 1-43 (43)
2 1bnx_A Protein (BAND 3); human 99.5 1E-15 3.5E-20 110.0 0.7 34 17-61 1-34 (34)
3 1bts_A BAND 3 anion transport 98.8 1.4E-09 4.6E-14 73.9 2.6 26 66-91 1-26 (26)
4 1btq_A BAND 3 anion transport 98.8 8.3E-10 2.8E-14 74.8 0.8 26 35-60 1-26 (26)
5 1bh7_A BAND 3; membrane protei 98.7 6.7E-10 2.3E-14 79.4 -2.2 33 463-501 1-33 (33)
6 3qe7_A Uracil permease; uracil 97.7 0.001 3.5E-08 72.4 17.7 256 40-356 25-287 (429)
7 1qle_D Cytochrome AA3, ccytoch 15.1 1.3E+02 0.0046 22.4 3.3 25 120-144 19-43 (43)
8 1m56_D Cytochrome C oxidase; m 11.3 2.1E+02 0.0072 22.1 3.5 25 120-144 27-51 (51)
9 2knc_A Integrin alpha-IIB; tra 10.5 1.6E+02 0.0054 23.1 2.5 20 288-307 9-28 (54)
10 2l8s_A Integrin alpha-1; trans 10.5 1.8E+02 0.006 22.9 2.8 21 288-308 6-26 (54)
No 1
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=99.75 E-value=9.2e-20 Score=137.85 Aligned_cols=43 Identities=30% Similarity=0.534 Sum_probs=40.5
Q ss_pred hcccccccccccccccCccccchhHHHHhhcchhhhhhhhccccc
Q 006628 17 GRVSCYKEDWISGISSGFGILAPTTYIFFASALPVVAFGEQLSRD 61 (638)
Q Consensus 17 rR~p~Y~SDw~Dg~~~~~~~laat~fifFA~l~PaIaFG~ll~~~ 61 (638)
||+|+|+|||+||+| .||+++++||||||++||||||++|+++
T Consensus 1 rR~p~Y~SD~~dg~~--~~~laa~~fiyFa~l~PaIaFG~ll~~~ 43 (43)
T 1bzk_A 1 XRYPYYLSDITDAFS--PQVLAAVIFIYFAALSPAITFGGLLGEK 43 (43)
T ss_dssp -CCSTTHHHHTTSSC--SHHHHHHHHHHHHTSTTTTTSSCCCCCC
T ss_pred CCCcccHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 799999999999999 7999999999999999999999999874
No 2
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=99.53 E-value=1e-15 Score=110.04 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=31.6
Q ss_pred hcccccccccccccccCccccchhHHHHhhcchhhhhhhhccccc
Q 006628 17 GRVSCYKEDWISGISSGFGILAPTTYIFFASALPVVAFGEQLSRD 61 (638)
Q Consensus 17 rR~p~Y~SDw~Dg~~~~~~~laat~fifFA~l~PaIaFG~ll~~~ 61 (638)
||+|+|+|||+| ++||||||++||||||++|+++
T Consensus 1 rR~p~Y~SD~~d-----------~~fiyFa~l~PaIaFg~ll~~~ 34 (34)
T 1bnx_A 1 XRYPYYLSDITD-----------VIFIYFAALSPAITFGGLLGEK 34 (34)
T ss_dssp -CCSTTTHHHHH-----------HHHHHHHHHHHHHHSSCSSCCC
T ss_pred CCCcccHHHHHH-----------HHHHHHHHHHHHHHHHHHHccC
Confidence 799999999999 9999999999999999999874
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=98.82 E-value=1.4e-09 Score=73.87 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=20.8
Q ss_pred cchhHHHHhhhHHHHHHHHhcCccee
Q 006628 66 LSTVETLASTALCGIIHSIVGGQPLL 91 (638)
Q Consensus 66 igv~E~L~stai~Giifslf~GQPL~ 91 (638)
+||+|+++||++||++||+||||||+
T Consensus 1 ~gv~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 1 XGVSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTC----
T ss_pred CchhHHHHHHHHHHHHHHHHhcccCC
Confidence 58999999999999999999999995
No 4
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=98.79 E-value=8.3e-10 Score=74.81 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=24.6
Q ss_pred cccchhHHHHhhcchhhhhhhhcccc
Q 006628 35 GILAPTTYIFFASALPVVAFGEQLSR 60 (638)
Q Consensus 35 ~~laat~fifFA~l~PaIaFG~ll~~ 60 (638)
||+++++||||||++|+||||++|++
T Consensus 1 q~laa~~FlyFa~l~paIaFGgLl~~ 26 (26)
T 1btq_A 1 XVLAAVIFIYFAALSPAITFGXXXXX 26 (26)
T ss_pred ChHHHHHHHHHHHHcchhccccccCC
Confidence 68999999999999999999999875
No 5
>1bh7_A BAND 3; membrane protein, cytoplasmic loop, anion exchange protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.69 E-value=6.7e-10 Score=79.38 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.0
Q ss_pred chHHHHHHHhhcCCCCCcccccCCCcccccccCcceehh
Q 006628 463 NQFWERMLLLFITPGRQYKVLEKDHASFVELVPYKYIVI 501 (638)
Q Consensus 463 nq~~eRi~llf~~~~~~~~~~~~~~~~yvr~Vp~~~ihl 501 (638)
+|||||++|+|||+|++ |+.+|+|+||+||||+
T Consensus 1 iQ~~~Ri~L~fmp~k~~------P~~~Yvr~Vp~~r~Hl 33 (33)
T 1bh7_A 1 IQLFDRILLLFKPPKYH------PDVPYVKRVKTWRMHL 33 (33)
T ss_dssp CCCTTTTCC-CCCSSCC------CC-CCCCTTHHHHHTC
T ss_pred CcHHHHHHHHcCCcccC------CCCceEEEcceeeeeC
Confidence 59999999999999863 6889999999999995
No 6
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=97.67 E-value=0.001 Score=72.36 Aligned_cols=256 Identities=16% Similarity=0.135 Sum_probs=132.9
Q ss_pred hHHHHhhcchhhhhhhhccccccCCCcchhHHHHhhhHHHHHHHHhcCcceee-eeccchHHHHHHHHHhhhcccccccc
Q 006628 40 TTYIFFASALPVVAFGEQLSRDTDGSLSTVETLASTALCGIIHSIVGGQPLLI-LGVAEPTVIMYTYLYNFAKDREDLGQ 118 (638)
Q Consensus 40 t~fifFA~l~PaIaFG~ll~~~T~g~igv~E~L~stai~Giifslf~GQPL~I-lG~TGP~~if~~~ly~~~~~~~~~g~ 118 (638)
.+-||-+.+++-+..|. +...++++++++.+++++++|-|+=+ +|++.-.+ ..+....+ .+
T Consensus 25 ~lam~~~~v~~PlilGl----------~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi---~~~~~i~~-~g---- 86 (429)
T 3qe7_A 25 LFAMFGATVLVPVLFHI----------NPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFI---SPVLLLLP-LG---- 86 (429)
T ss_dssp HHHHHHHHHHHHHTTTS----------CHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGH---HHHHHHGG-GC----
T ss_pred HHHHHHHHHHhHHHhCC----------CHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHH---HHHHHHHh-cC----
Confidence 34456566554443342 34579999999999999998888875 78774432 22222222 21
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH--hc--chhhhcccccchhHHHHHHHHHHHHHHHHhhhhccccCCCCCCCcccchh
Q 006628 119 KLYLAWAGWVCVWTALMLFLLAVF--NA--GDLINRFTRIAGELFGMLIAVLFIQQAIKGMVTEFKIPKDEDSNLDKYQF 194 (638)
Q Consensus 119 ~~fL~~~~WVgiWta~~l~lla~~--na--s~li~~~TRfTeEiF~~lIsviFi~eaik~l~~~F~~p~~~~~~~~~~~~ 194 (638)
.+.. .=..+.++++.++++.+ .. ..+.|++..-.--.|-++|.+.-+--+++..- .. .. +. . +
T Consensus 87 ~~~~---~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~--~~-~~--~~--~-~-- 153 (429)
T 3qe7_A 87 YEVA---LGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG--LL-PA--EG--Q-T-- 153 (429)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHT--SS-CB--TT--B-C--
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhcc--cc-CC--CC--c-c--
Confidence 2222 12346667777777776 33 35778787655555556666655555555421 00 00 00 0 0
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhhccccccccccccchhhccchhhHHHHHHhhhccccCc-cCCCCCcccccCCCCCC
Q 006628 195 QWLYTNGLLGIIFTFGLVYTALKSRKARFWWYGTGWLRSFVADYGVPLMVVVWTALSFSVPS-KVPSGVPRRLFSPLPWE 273 (638)
Q Consensus 195 ~~~~~~~llsliL~~gt~~~a~~l~~~r~s~y~~~~~R~~iaDfgvpiaV~~~t~~~y~~~~-~vp~~~~~rl~~p~~~~ 273 (638)
. ..-.+.+++.++.+.+.+.+ + .|++++-+++.+++++-+.+++..+. +.+. +. ..||-
T Consensus 154 ----~-~~~~~~la~~tl~iii~~~~-----~----~kg~~~~~aiLigivvg~~~a~~~G~~d~~~-v~-----~a~~~ 213 (429)
T 3qe7_A 154 ----P-DSKTIIISITTLAVTVLGSV-----L----FRGFLAIIPILIGVLVGYALSFAMGIVDTTP-II-----NAHWF 213 (429)
T ss_dssp ----C-CHHHHHHHHHHHHHHHHHHH-----S----SSTTTTTHHHHHHHHHHHHHHHHHHHTTSSH-HH-----HSCSS
T ss_pred ----c-cHHHHHHHHHHHHHHHHHHH-----H----hcccchhhHHHHHHHHHHHHHHHhcCCCccc-cc-----ccccc
Confidence 0 01123444444444433321 2 23444556899999998888765431 2111 10 01121
Q ss_pred CCCCccceeeccCCCcchHHHHHHHHHHHHhhhheeechhhHHHHhh-cccccCCCCCccchhhHHHHHHHhhhhhcCCC
Q 006628 274 SGSLEHWSVMKDMGKVPLAYIFAAFIPAVMIAGLYFFDHSVASQLAQ-QKEFNLKKPSAYHYDILLLGFMTLLCGLIGLP 352 (638)
Q Consensus 274 ~~~~r~W~V~~~~~~vp~~~i~~A~iPA~ll~iL~F~D~nIts~i~n-~~e~kLkKgsgyH~DLlllgi~t~icsllGLP 352 (638)
. ...|. . + ++.+. ++++.+.+++.-++|+-=+..-+. .-+.+..|.+..|=.+..-|+-|.++|++|-+
T Consensus 214 ~--lP~~~-~-P--~f~~~----~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~ 283 (429)
T 3qe7_A 214 A--LPTLY-T-P--RFEWF----AILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGST 283 (429)
T ss_dssp C--CCCCC-C-C--CCCHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred c--ccCCC-C-C--cccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCC
Confidence 0 00011 0 1 12222 223333344444567643322211 11223445667888999999999999999976
Q ss_pred CCCC
Q 006628 353 PSNG 356 (638)
Q Consensus 353 w~~g 356 (638)
+.++
T Consensus 284 p~Tt 287 (429)
T 3qe7_A 284 PNTT 287 (429)
T ss_dssp CEEE
T ss_pred Ccch
Confidence 6544
No 7
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=15.13 E-value=1.3e+02 Score=22.39 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 006628 120 LYLAWAGWVCVWTALMLFLLAVFNA 144 (638)
Q Consensus 120 ~fL~~~~WVgiWta~~l~lla~~na 144 (638)
-|+.|.-|.++=++++++++++|++
T Consensus 19 gFi~~~k~gt~~~~~~ll~maif~~ 43 (43)
T 1qle_D 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999974
No 8
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=11.32 E-value=2.1e+02 Score=22.06 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 006628 120 LYLAWAGWVCVWTALMLFLLAVFNA 144 (638)
Q Consensus 120 ~fL~~~~WVgiWta~~l~lla~~na 144 (638)
-|+.|.-|.++=++++++++++|++
T Consensus 27 gFi~~~k~gt~~~~~~ll~laif~~ 51 (51)
T 1m56_D 27 GFVRMVTWAAVVIVAALIFLALANA 51 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4999999999999999999999974
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.47 E-value=1.6e+02 Score=23.10 Aligned_cols=20 Identities=5% Similarity=0.484 Sum_probs=15.0
Q ss_pred CcchHHHHHHHHHHHHhhhh
Q 006628 288 KVPLAYIFAAFIPAVMIAGL 307 (638)
Q Consensus 288 ~vp~~~i~~A~iPA~ll~iL 307 (638)
.+|+|.|.+|++-|+++..|
T Consensus 9 ~vp~wiIi~svl~GLllL~l 28 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTI 28 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 57889888888877766554
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.47 E-value=1.8e+02 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.399 Sum_probs=15.1
Q ss_pred CcchHHHHHHHHHHHHhhhhe
Q 006628 288 KVPLAYIFAAFIPAVMIAGLY 308 (638)
Q Consensus 288 ~vp~~~i~~A~iPA~ll~iL~ 308 (638)
.+|+|.|.+|++-|+++..|+
T Consensus 6 ~vp~WiIi~svl~GLLLL~Li 26 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLL 26 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHH
Confidence 478888888888777665543
Done!