Query 006628
Match_columns 638
No_of_seqs 151 out of 572
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 04:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006628.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006628hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 55.8 4.6 0.00034 28.6 3.3 25 120-144 19-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 55.7 5.1 0.00037 28.2 3.5 25 120-144 18-42 (42)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 18.6 16 0.0012 29.7 0.9 26 502-531 1-26 (158)
4 d2i5nh2 f.23.10.1 (H:1-36) Pho 12.2 60 0.0044 21.1 2.2 18 121-138 14-32 (36)
5 d3b45a1 f.51.1.1 (A:91-270) Gl 12.0 1.1E+02 0.0078 25.9 4.8 56 45-103 62-118 (180)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 7.3 1E+02 0.0075 19.3 1.8 11 158-168 9-19 (30)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 7.0 3.1E+02 0.023 26.6 6.7 47 208-254 383-429 (472)
8 d1rh1a2 f.1.1.1 (A:313-511) Co 5.9 1E+02 0.0074 27.9 1.7 37 60-96 123-166 (199)
9 d2hg6a1 d.364.1.1 (A:1-106) Hy 5.2 47 0.0034 26.8 -0.9 15 149-163 27-41 (106)
10 d2e74e1 f.23.24.1 (E:1-32) Pet 4.4 1.2E+02 0.0091 19.1 0.9 15 159-173 16-30 (32)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=55.84 E-value=4.6 Score=28.57 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 006628 120 LYLAWAGWVCVWTALMLFLLAVFNA 144 (638)
Q Consensus 120 ~fL~~~~WVgiWta~~l~lla~~na 144 (638)
-|+.|.-|+++-..++++.+|++|+
T Consensus 19 gFi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999985
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=55.74 E-value=5.1 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 006628 120 LYLAWAGWVCVWTALMLFLLAVFNA 144 (638)
Q Consensus 120 ~fL~~~~WVgiWta~~l~lla~~na 144 (638)
-|+.|.-|+++=..++++.+|++|+
T Consensus 18 gFik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999985
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=18.57 E-value=16 Score=29.73 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred hHHHHHHHhhhheeeecchhhHhhhHHHHH
Q 006628 502 FTLFQFVYFLVCYGVTWIPVAGILFPVPFF 531 (638)
Q Consensus 502 FT~iQl~~l~~~~~v~~~~~aai~FPl~i~ 531 (638)
||+++++..+++.||+ +++++|-+.-
T Consensus 1 FTLIELlVViaIIgIL----aaia~P~~~~ 26 (158)
T d2pila_ 1 FTLIELMIVIAIVGIL----AAVALPAYQD 26 (158)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999998887777776 7788886543
No 4
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=12.19 E-value=60 Score=21.10 Aligned_cols=18 Identities=39% Similarity=1.267 Sum_probs=12.6
Q ss_pred hhhHHH-HHHHHHHHHHHH
Q 006628 121 YLAWAG-WVCVWTALMLFL 138 (638)
Q Consensus 121 fL~~~~-WVgiWta~~l~l 138 (638)
-|.|++ |.-+|+.+++.+
T Consensus 14 qlvwyaqwlviwtvvllyl 32 (36)
T d2i5nh2 14 QLVWYAQWLVIWTVVLLYL 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 455554 899999887653
No 5
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=11.96 E-value=1.1e+02 Score=25.95 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=34.8
Q ss_pred hhcchhhhhhhhccccccCCCcchhHH-HHhhhHHHHHHHHhcCcceeeeeccchHHHHH
Q 006628 45 FASALPVVAFGEQLSRDTDGSLSTVET-LASTALCGIIHSIVGGQPLLILGVAEPTVIMY 103 (638)
Q Consensus 45 FA~l~PaIaFG~ll~~~T~g~igv~E~-L~stai~Giifslf~GQPL~IlG~TGP~~if~ 103 (638)
+.|...-..||..++++-+. .-.... +++..++|++..++... ...|.+|-+...-
T Consensus 62 ~~N~~~l~~~G~~lE~~~G~-~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~ 118 (180)
T d3b45a1 62 LFNLLWWWYLGGAVEKRLGS-GKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALM 118 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-hhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHH
Confidence 45566667789888876543 223333 34566667777777665 4678888754443
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.31 E-value=1e+02 Score=19.31 Aligned_cols=11 Identities=36% Similarity=0.920 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 006628 158 LFGMLIAVLFI 168 (638)
Q Consensus 158 iF~~lIsviFi 168 (638)
||+++|++.|.
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888765
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.04 E-value=3.1e+02 Score=26.61 Aligned_cols=47 Identities=9% Similarity=-0.173 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhccccccccccccchhhccchhhHHHHHHhhhcccc
Q 006628 208 TFGLVYTALKSRKARFWWYGTGWLRSFVADYGVPLMVVVWTALSFSV 254 (638)
Q Consensus 208 ~~gt~~~a~~l~~~r~s~y~~~~~R~~iaDfgvpiaV~~~t~~~y~~ 254 (638)
.+.-.+.++..|..|.+-+..+..|+-.--+++.+++++...+.|.+
T Consensus 383 v~~q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP 429 (472)
T d1wpga4 383 VTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVD 429 (472)
T ss_dssp HHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhh
Confidence 33344556666666666555555566555566666666666666654
No 8
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.86 E-value=1e+02 Score=27.89 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.3
Q ss_pred cccCCCcch---hHHHH----hhhHHHHHHHHhcCcceeeeecc
Q 006628 60 RDTDGSLST---VETLA----STALCGIIHSIVGGQPLLILGVA 96 (638)
Q Consensus 60 ~~T~g~igv---~E~L~----stai~Giifslf~GQPL~IlG~T 96 (638)
-+|+++=-. +|+++ +|+++..+||+..|-|+.|+|..
T Consensus 123 ~eTgNWrPl~vk~Et~a~~~~At~v~~~~fs~~~g~~~~~~g~~ 166 (199)
T d1rh1a2 123 YQTGNWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLS 166 (199)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hhCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 367766554 68888 78888899999999999999976
No 9
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.22 E-value=47 Score=26.80 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.0
Q ss_pred hcccccchhHHHHHH
Q 006628 149 NRFTRIAGELFGMLI 163 (638)
Q Consensus 149 ~~~TRfTeEiF~~lI 163 (638)
.|+-||+|+.||+=+
T Consensus 27 ~~ivRFSEDsFGmDV 41 (106)
T d2hg6a1 27 RYIVRFSEDSFGMDV 41 (106)
T ss_dssp EEEEESCGGGCSSSS
T ss_pred eEEEEecccccCCcc
Confidence 678899999998633
No 10
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.40 E-value=1.2e+02 Score=19.08 Aligned_cols=15 Identities=33% Similarity=0.855 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 006628 159 FGMLIAVLFIQQAIK 173 (638)
Q Consensus 159 F~~lIsviFi~eaik 173 (638)
||.-+.+||-.+++|
T Consensus 16 fgiavgiifaiksik 30 (32)
T d2e74e1 16 FGIAVGIIFAIKSIK 30 (32)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHhhheeeEEEEe
Confidence 677777777666654
Done!