Query 006629
Match_columns 638
No_of_seqs 284 out of 634
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 2E-184 4E-189 1551.2 49.2 573 56-638 83-666 (918)
2 PLN02264 lipoxygenase 100.0 1E-182 3E-187 1536.4 47.2 571 56-638 86-668 (919)
3 PLN02337 lipoxygenase 100.0 2E-180 4E-185 1523.0 49.1 572 56-638 20-611 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 1E-135 2E-140 1153.1 19.0 427 204-638 1-431 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 1.7E-36 3.7E-41 284.0 13.1 128 56-195 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.2 4.4E-11 9.5E-16 106.3 10.3 82 92-182 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.9 5.5E-09 1.2E-13 93.1 8.4 64 128-193 46-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.6 1.2E-07 2.6E-12 85.7 8.7 62 131-192 50-115 (116)
9 cd02899 PLAT_SR Scavenger rece 98.2 2.2E-06 4.9E-11 78.3 6.4 77 92-182 20-98 (109)
10 cd01753 PLAT_LOX PLAT domain o 97.9 4.7E-05 1E-09 69.8 7.8 82 92-183 20-105 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.8 0.00021 4.6E-09 65.8 10.5 85 92-184 20-108 (120)
12 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.7 0.00012 2.6E-09 67.6 7.4 48 138-185 49-100 (114)
13 cd01752 PLAT_polycystin PLAT/L 97.6 0.00034 7.4E-09 64.5 9.8 85 92-184 20-108 (120)
14 cd01754 PLAT_plant_stress PLAT 97.6 0.00018 4E-09 67.7 7.1 57 126-184 55-118 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 52.6 72 0.0016 29.6 7.9 50 129-178 46-105 (120)
16 KOG2080 Uncharacterized conser 26.7 25 0.00055 42.6 0.6 51 132-183 1014-1068(1295)
17 TIGR03124 ctirate_citX holo-AC 23.7 69 0.0015 31.8 2.9 54 197-266 81-134 (165)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=2e-184 Score=1551.24 Aligned_cols=573 Identities=48% Similarity=0.880 Sum_probs=535.3
Q ss_pred ceeeEEEeeecc-eeeeEEEEecccCCCcc-ccccccc-cEEEEEEeeecCCCCCCcc---cccccccccCCCCCCCCce
Q 006629 56 SIKAIFNLTEKS-TKVKAVITVKPIIPDPL-ALSSLVG-ALGLELVSAELDPKTGEEK---PTIKGLALGVLGKDDDGNI 129 (638)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~g-~v~lqlvs~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 129 (638)
++||+|++|+++ ++++++.+ + .+ +++|++| +|+|||||++++|+||+|| ++|++|+++ ... +++++
T Consensus 83 ~i~~~v~~~~~~~~~~~~~~~---~---~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~-~~~~~ 154 (918)
T PLN02305 83 DVRAVITIRKKIKEKITEKFE---D---QWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSN-DPHIV 154 (918)
T ss_pred eEEEEEEEEeecccchhhccc---c---hhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCC-CCCce
Confidence 488888888887 67776554 2 24 7999999 9999999999999998555 899999986 333 14678
Q ss_pred EEEEEEeccCCCCCeeEEEEEeCCCCceEEeEEEEcccCCccEEEEecccccCCCCCCcceEEeeCCcccCCCCChhhHH
Q 006629 130 KYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKR 209 (638)
Q Consensus 130 ~~~v~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~g~i~F~cnsWV~~~~~~~~~riff~nkayLP~~tp~~L~~ 209 (638)
+|+++|+||++||+||||+|+|+|++||||++|||+++|+|+|||+||||||+.++|+++||||+||+|||++||++|++
T Consensus 155 ~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~ 234 (918)
T PLN02305 155 EYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKD 234 (918)
T ss_pred EEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCccc-ccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCC---cC
Q 006629 210 LRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSV---SI 285 (638)
Q Consensus 210 ~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~-~~~RpvlGg~~~PYPRR~rTgR~~~~~dp~~esr~~---~~ 285 (638)
|||+||++|||||+||||+||||||||+|||||+||++ +++||||||++|||||||||||+||++||.+|||.. .+
T Consensus 235 ~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~ 314 (918)
T PLN02305 235 LRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPV 314 (918)
T ss_pred HHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCc
Confidence 99999999999999999999999999999999999999 999999999779999999999999999999999954 47
Q ss_pred cCCCCcccchhhhcccccchHHHhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhccCCCCCCCCCCchhhhhhhh-hhhhh
Q 006629 286 YVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILP-ILFKT 364 (638)
Q Consensus 286 yvPrDe~Fs~~K~~dF~~~~l~~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~~~-~~~e~ 364 (638)
||||||+|+++|++||+++++|+++|.++|.|+++++.++.+|+||+||++||++|+++| ....+.+.+..+| .+.+.
T Consensus 315 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~-~~~~~~~~~~p~~~~~~~~ 393 (918)
T PLN02305 315 YVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLK-TEEPKDIGLNPFLGNFMKQ 393 (918)
T ss_pred CCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCC-chhhhhhhcCCchHHHHHH
Confidence 999999999999999999999999999999999999888999999999999999999998 3200122221132 44444
Q ss_pred hccCCcccccccCccccccccccccccHHHHHhhhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcHHHHHHHhCCcc
Q 006629 365 VSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLM 444 (638)
Q Consensus 365 ~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~s~It~e~ie~~l~g~~ 444 (638)
++++++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+|||+..|+| +
T Consensus 394 i~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~ 472 (918)
T PLN02305 394 VLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-M 472 (918)
T ss_pred hhhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-C
Confidence 588899999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cHHHHHhCCcEEEEecccccccccccccCCCCceeeeeceEEeeCCCCceeeEEEEecCCCCCCCCCcceEeeCCCCCCC
Q 006629 445 TVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTD 524 (638)
Q Consensus 445 Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VfTP~d~~~~ 524 (638)
||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||++++++
T Consensus 473 TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~ 552 (918)
T PLN02305 473 TVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATT 552 (918)
T ss_pred cHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988777778899999877778
Q ss_pred chHHHHHHHHhhhccchhhHHHHHhhccccchhHHHHHHhcccCcccchhHhcchhhhhhhHhHHHHHHhcccCCceeee
Q 006629 525 SWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVET 604 (638)
Q Consensus 525 ~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~ 604 (638)
+|.|+||||||++||++|||+|+||++||+||||||||||||||++|||||||+||||+||+||++||++|||+||+||+
T Consensus 553 ~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~ 632 (918)
T PLN02305 553 HWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEA 632 (918)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHhccccccCCCCchhhhhcC
Q 006629 605 TFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638 (638)
Q Consensus 605 ~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~R 638 (638)
+|++|+|+|||++++|++.|+|++++||+||++|
T Consensus 633 ~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kR 666 (918)
T PLN02305 633 CFSPGKYAMELSSAAYKSMWRFDMEALPADLIRR 666 (918)
T ss_pred eeccchhHHHHHHHHHHhcCcCccccCHHHHHHc
Confidence 9999999999999999988999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.4e-182 Score=1536.41 Aligned_cols=571 Identities=44% Similarity=0.851 Sum_probs=530.6
Q ss_pred ceeeEEEeeecc-eeeeEEEEecccCCCcc-ccccccc-cEEEEEEeeecCCCCCC---cc-cccccccccCCCCCCCCc
Q 006629 56 SIKAIFNLTEKS-TKVKAVITVKPIIPDPL-ALSSLVG-ALGLELVSAELDPKTGE---EK-PTIKGLALGVLGKDDDGN 128 (638)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~g-~v~lqlvs~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 128 (638)
++||+|++|+++ ++++++.+ + .+ +++|++| +|+|||||++++|+||+ || ++|++|+++ .... +++
T Consensus 86 ~i~~~v~~~~~~~~~~~~~~~---~---~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~~-~~~ 157 (919)
T PLN02264 86 KVRAVVTVRNKNKEDLKETLV---K---HLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNIK-AER 157 (919)
T ss_pred EEEEEEEEEeccccchhhccc---c---hhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCCC-CCc
Confidence 467777777766 56665443 1 24 7999999 99999999999999984 33 999999987 3333 578
Q ss_pred eEEEEEEeccCCCCCeeEEEEEeCCCCceEEeEEEEcccCCccEEEEecccccCCCCCCcceEEeeCCcccCCCCChhhH
Q 006629 129 IKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLK 208 (638)
Q Consensus 129 ~~~~v~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~g~i~F~cnsWV~~~~~~~~~riff~nkayLP~~tp~~L~ 208 (638)
++|+|+|+||++||+||||+|+|+|++||||++|||+++|+|+|||+|||||||.++|+++||||+||+|||++||++|+
T Consensus 158 ~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~ 237 (919)
T PLN02264 158 VHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLR 237 (919)
T ss_pred eEEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCccc-ccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCC---c
Q 006629 209 RLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSV---S 284 (638)
Q Consensus 209 ~~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~-~~~RpvlGg~~~PYPRR~rTgR~~~~~dp~~esr~~---~ 284 (638)
+|||+||++|||||+||||+||||||||+|||||+||++ +++||||||++|||||||||||+||++||.+|||.. .
T Consensus 238 ~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~ 317 (919)
T PLN02264 238 ALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLP 317 (919)
T ss_pred HHHHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCc
Confidence 999999999999999999999999999999999999999 999999999779999999999999999999999954 4
Q ss_pred CcCCCCcccchhhhcccccchHHHhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhccCCCCCCCCCCchhhhhh-hhhhhh
Q 006629 285 IYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKI-LPILFK 363 (638)
Q Consensus 285 ~yvPrDe~Fs~~K~~dF~~~~l~~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~-~~~~~e 363 (638)
+||||||+|+++|++||.++++||++|.++|.|+++++.+ +|+||+||++||++|+++| ....++..+.+ +|.+.+
T Consensus 318 iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~-~~~~~~~~~~~p~~~~~~ 394 (919)
T PLN02264 318 MYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLK-LGFQDDIFKKFPLPKVVT 394 (919)
T ss_pred eeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCC-cchhhhHhhcCChHHHHH
Confidence 7999999999999999999999999999999999998754 9999999999999999998 32112223333 435555
Q ss_pred hhccCCcccccccCccccccccccccccHHHHHhhhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcHHHHHHHhCCc
Q 006629 364 TVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGL 443 (638)
Q Consensus 364 ~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~s~It~e~ie~~l~g~ 443 (638)
.++++++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+|||+.||+++|+||++||++.|+|
T Consensus 395 ~~~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G- 473 (919)
T PLN02264 395 TLQESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG- 473 (919)
T ss_pred HhhhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-
Confidence 5588899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccHHHHHhCCcEEEEecccccccccccccCCCCceeeeeceEEeeCCCCceeeEEEEecCCCCCCCCCcceEeeCCCCCC
Q 006629 444 MTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHST 523 (638)
Q Consensus 444 ~Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VfTP~d~~~ 523 (638)
+||+|||++|||||+||||++|||++++|.++++++|||+||||++++|+|+||||||+++++++++++++||||+++++
T Consensus 474 ~Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~ 553 (919)
T PLN02264 474 LSVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDAT 553 (919)
T ss_pred CcHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998776667889999977677
Q ss_pred CchHHHHHHHHhhhccchhhHHHHHhhccccchhHHHHHHhcccCcccchhHhcchhhhhhhHhHHHHHHhcccCCceee
Q 006629 524 DSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVE 603 (638)
Q Consensus 524 ~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie 603 (638)
++|.|+||||||++||++|||+|+||++||+|||||||||+||||.+|||||||.||||+||+||++||++|||+||++|
T Consensus 554 ~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid 633 (919)
T PLN02264 554 SNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIE 633 (919)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCChhHHHHHHHHhccccccCCCCchhhhhcC
Q 006629 604 TTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638 (638)
Q Consensus 604 ~~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~R 638 (638)
++|++|+|+|||++++|++.|+|++++||+||++|
T Consensus 634 ~~f~pg~~~~elss~aYk~~W~F~~~~LP~DL~~R 668 (919)
T PLN02264 634 SCFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRR 668 (919)
T ss_pred EeeccchhHHHHHHHHHHhccCCccccCHHHHHHc
Confidence 99999999999999999966999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=2e-180 Score=1522.98 Aligned_cols=572 Identities=44% Similarity=0.779 Sum_probs=533.2
Q ss_pred ceeeEEEeeecc-eeeeEEEEecccCCCcc-ccccccc-cEEEEEEeeecCC-CCC-Ccc----cccccccccCCCCCCC
Q 006629 56 SIKAIFNLTEKS-TKVKAVITVKPIIPDPL-ALSSLVG-ALGLELVSAELDP-KTG-EEK----PTIKGLALGVLGKDDD 126 (638)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~g-~v~lqlvs~~~~~-~~~-~~~----~~~~~~~~~~~~~~~~ 126 (638)
++||+|++|+++ ++++++.+ + .+ +++|++| +|+|||||++++| +|| +|| ++|++|+++..... +
T Consensus 20 ~~~~~v~l~~k~~ld~~~~~~---~---~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~~~-~ 92 (866)
T PLN02337 20 KIKGTVVLMKKNVLDFNDFNA---S---VLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITSLT-A 92 (866)
T ss_pred eEEEEEEEEEecccchhhccc---c---hhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCCCC-C
Confidence 599999999998 78887664 2 34 7999999 9999999999998 677 443 99999998755534 5
Q ss_pred CceEEEEEEeccCCCCCeeEEEEEeCCCCceEEeEEEEcccC-CccEEEEecccccCCCCCCcceEEeeCCcccCCCCCh
Q 006629 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLP-NGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPN 205 (638)
Q Consensus 127 ~~~~~~v~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p-~g~i~F~cnsWV~~~~~~~~~riff~nkayLP~~tp~ 205 (638)
++++|+|+|+||++||+||||+|+|+|++||||++|||+++| +|+|||+|||||||.++|+++||||+||+|||++||+
T Consensus 93 ~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~tP~ 172 (866)
T PLN02337 93 GESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQTPA 172 (866)
T ss_pred CceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcccccH
Confidence 788999999999999999999999999999999999999999 4899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCccc-ccccccCCC-CCCCCCCccCCCCCCCCCCCCCCCCCC
Q 006629 206 GLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTGRPKSFADPASESRSV 283 (638)
Q Consensus 206 ~L~~~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~-~~~RpvlGg-~~~PYPRR~rTgR~~~~~dp~~esr~~ 283 (638)
+|++|||+||++|||||+||||+||||||||+|||||+||++ +++|||||| ++|||||||||||+||++||.+|||..
T Consensus 173 ~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~esr~~ 252 (866)
T PLN02337 173 PLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSESRLP 252 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCccccccc
Confidence 999999999999999999999999999999999999999999 999999999 679999999999999999999999943
Q ss_pred ----cCcCCCCcccchhhhcccccchHHHhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhccCCCCCCCCCCchhhhhh--
Q 006629 284 ----SIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKI-- 357 (638)
Q Consensus 284 ----~~yvPrDe~Fs~~K~~dF~~~~l~~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~-- 357 (638)
.+||||||+|+++|++||.++++||++|.++|.|+++++.+..+|+||+||++||++|+++| ..+.-+..+..
T Consensus 253 ~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp-~~~~~~~~~~~~p 331 (866)
T PLN02337 253 LLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLP-NGPLLEELRKNIP 331 (866)
T ss_pred cCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCC-CchHHHHhhhcCh
Confidence 47999999999999999999999999999999999999888899999999999999999998 32111122332
Q ss_pred hhhhhhhhccCCcccccccCccccccccccccccHHHHHhhhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcHHHHH
Q 006629 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIE 437 (638)
Q Consensus 358 ~~~~~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~s~It~e~ie 437 (638)
++.+++.++++++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||++||+
T Consensus 332 ~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~e~v~ 411 (866)
T PLN02337 332 LEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITEEHIE 411 (866)
T ss_pred HHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccCHHHHH
Confidence 44577777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccHHHHHhCCcEEEEecccccccccccccCCCCceeeeeceEEeeCCCCceeeEEEEecCCCCCCC--CCcceE
Q 006629 438 QEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGK--PQWKQV 515 (638)
Q Consensus 438 ~~l~g~~Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PlAIqL~~~~~~~~--~~~~~V 515 (638)
+.|+| +||+|||++|||||+||||++|||+.++|...++ .|||+||||++++|+|+||||||++|+..++ +++++|
T Consensus 412 ~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~~~~V 489 (866)
T PLN02337 412 KNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGAVSKV 489 (866)
T ss_pred hccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCCCCcccCCCCCCe
Confidence 99998 9999999999999999999999999999976554 9999999999999999999999998875433 467999
Q ss_pred eeCCCCCCCchHHHHHHHHhhhccchhhHHHHHhhccccchhHHHHHHhcccCcccchhHhcchhhhhhhHhHHHHHHhc
Q 006629 516 FTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLIL 595 (638)
Q Consensus 516 fTP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~L 595 (638)
|||+++++++|.|+||||||++||++|||+|+||++||++||||||||+||||++|||||||+||||+||+||++||++|
T Consensus 490 fTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~L 569 (866)
T PLN02337 490 YTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALARQIL 569 (866)
T ss_pred ECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99998777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeeccCCChhHHHHHHHHhccccccCCCCchhhhhcC
Q 006629 596 VNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638 (638)
Q Consensus 596 I~~gGiie~~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~R 638 (638)
||+||++|+++++|+|+|||++++|++ |+|++++||+||++|
T Consensus 570 I~~gGiid~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~R 611 (866)
T PLN02337 570 INAGGILESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIKR 611 (866)
T ss_pred eCCCCeeeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHHc
Confidence 999999999999999999999999999 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=9.7e-136 Score=1153.13 Aligned_cols=427 Identities=57% Similarity=1.003 Sum_probs=364.5
Q ss_pred ChhhHHHHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCccc-ccccccCCC-CCCCCCCccCCCCCCCCCCCCCCCC
Q 006629 204 PNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTGRPKSFADPASESR 281 (638)
Q Consensus 204 p~~L~~~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~-~~~RpvlGg-~~~PYPRR~rTgR~~~~~dp~~esr 281 (638)
|++|+++||+||++|||||+||||+||||||||||||||+||++ +++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 78999999999999999999999999999999999999999999 999999999 8999999999999999999999999
Q ss_pred CCcCcCCCCcccchhhhcccccchHHHhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhccCCCCCCCCCCchhhhhh--hh
Q 006629 282 SVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKI--LP 359 (638)
Q Consensus 282 ~~~~yvPrDe~Fs~~K~~dF~~~~l~~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~--~~ 359 (638)
..++||||||+|+++|++||.++++||++|.++|.|++++..+..+|+||+||++||++|+++| . +..+.. ++
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~-~----~~~~~~~~~~ 155 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLP-T----DLLKKLIPLE 155 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE---H----HHHCCHTTST
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccch-h----hHhhhcCcHH
Confidence 8899999999999999999999999999999999999998878899999999999999999887 2 122222 44
Q ss_pred hhhhhhccCCcccccccCccccccccccccccHHHHHhhhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcHHHHHHH
Q 006629 360 ILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQE 439 (638)
Q Consensus 360 ~~~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~s~It~e~ie~~ 439 (638)
.+.+.+.++++.++|||+|+++++++++|++|+|||||+|||+||++|+||+++|++++|||++||+++++||++||+..
T Consensus 156 ~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~ 235 (667)
T PF00305_consen 156 LLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQ 235 (667)
T ss_dssp TCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHH
T ss_pred HHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhhc
Confidence 57788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccHHHHHhCCcEEEEecccccccccccccCCCCceeeeeceEEeeCCCCceeeEEEEecCCCCCCCCCcceEeeCC
Q 006629 440 IGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPS 519 (638)
Q Consensus 440 l~g~~Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VfTP~ 519 (638)
|+| +||++||++|||||+|||++++|+++++|. ++++.|||+||||++++|+|+||||||++|+..+.+++++||||+
T Consensus 236 l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~ 313 (667)
T PF00305_consen 236 LEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPS 313 (667)
T ss_dssp CHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TT
T ss_pred cCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecC
Confidence 999 999999999999999999999999999987 788999999999999999999999999888655545678999999
Q ss_pred CCCCCchHHHHHHHHhhhccchhhHHHHHhhccccchhHHHHHHhcccCcccchhHhcchhhhhhhHhHHHHHHhcccCC
Q 006629 520 RHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAG 599 (638)
Q Consensus 520 d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~g 599 (638)
++++.+|.|+||||||++||+++||+|+||++||+|||||||||+||||.+|||||||.||||+||+||++||++|||+|
T Consensus 314 ~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~~g 393 (667)
T PF00305_consen 314 DDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLINAG 393 (667)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSSTT
T ss_pred CCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhccC
Confidence 65566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCChhHHHHHHHHhccccccCCCCchhhhhcC
Q 006629 600 GLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638 (638)
Q Consensus 600 Giie~~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~R 638 (638)
|+||++|++|+++|||++++|++ |+|++++||+||++|
T Consensus 394 G~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~R 431 (667)
T PF00305_consen 394 GIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKR 431 (667)
T ss_dssp SHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHT
T ss_pred cccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhh
Confidence 99999999999999999999999 999999999999998
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=1.7e-36 Score=284.00 Aligned_cols=128 Identities=41% Similarity=0.726 Sum_probs=115.0
Q ss_pred ceeeEEEeeecc-eeeeEEEEecccCCCcc-ccccccc-cEEEEEEeeecCCCCCCcc----cccccccccCCCCCCCCc
Q 006629 56 SIKAIFNLTEKS-TKVKAVITVKPIIPDPL-ALSSLVG-ALGLELVSAELDPKTGEEK----PTIKGLALGVLGKDDDGN 128 (638)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~g-~v~lqlvs~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 128 (638)
++||+|++|+++ ++++++. ..+ +++|++| +|+|||||++++|+||+|| ++|++|.++. . ++
T Consensus 2 ~vka~V~v~~k~~~~~~~~~-------~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~---~--~e 69 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG-------SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL---A--GE 69 (137)
T ss_pred EEEEEEEEEEeecccccccc-------chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC---C--cc
Confidence 489999999887 7777644 124 7899999 9999999999999999655 9999998654 2 56
Q ss_pred eEEEEEEeccCCCCCeeEEEEEeCCCCceEEeEEEEcccCC-ccEEEEecccccCCCCCCcceEEeeC
Q 006629 129 IKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIVDKQKRIFFTN 195 (638)
Q Consensus 129 ~~~~v~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~-g~i~F~cnsWV~~~~~~~~~riff~n 195 (638)
++|+++|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||.++|+++||||+|
T Consensus 70 ~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 70 SAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred eEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 79999999999999999999999999999999999999994 89999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.24 E-value=4.4e-11 Score=106.34 Aligned_cols=82 Identities=27% Similarity=0.540 Sum_probs=63.2
Q ss_pred cEEEEEEeeecCCCCCCc-ccccccccccCCCCCCCCceEEEEEEeccCCCCCeeEEEEEeCC-CCceEEeEEEEcccCC
Q 006629 92 ALGLELVSAELDPKTGEE-KPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ-LTEMYLQDIVLDGLPN 169 (638)
Q Consensus 92 ~v~lqlvs~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~fG~pgai~v~n~~-~~e~fl~~i~l~~~p~ 169 (638)
+|.|+|++++.+ +|.. ...++.|. .. ....|+..|+++.++|++++|.|++++ ..+|||++|+|++.+.
T Consensus 20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f~--~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~ 90 (105)
T smart00308 20 SVSLSLVGAEGD--GKESKLDYLFKGI-----FA--RGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPT 90 (105)
T ss_pred eEEEEEEeCCCC--CcceeccccCCcc-----cc--CCceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCC
Confidence 799999998764 3321 13344442 22 233677777799999999999999999 8999999999988665
Q ss_pred c-cEEEEecccccC
Q 006629 170 G-PVNLTCDSWIQP 182 (638)
Q Consensus 170 g-~i~F~cnsWV~~ 182 (638)
+ .++|+||+||++
T Consensus 91 ~~~~~F~c~~Wl~~ 104 (105)
T smart00308 91 GGKYHFPCNSWVYP 104 (105)
T ss_pred CCEEEEEcCceeCC
Confidence 5 899999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.89 E-value=5.5e-09 Score=93.10 Aligned_cols=64 Identities=25% Similarity=0.577 Sum_probs=55.8
Q ss_pred ceEEEEEEeccCCCCCeeEEEEEeC---CCCceEEeEEEEcccCCc-cEEEEecccccCCCCCCcceEEe
Q 006629 128 NIKYKAELKIPASFGDVGAILVESD---QLTEMYLQDIVLDGLPNG-PVNLTCDSWIQPKIVDKQKRIFF 193 (638)
Q Consensus 128 ~~~~~v~f~~~~~fG~pgai~v~n~---~~~e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~~~~~~riff 193 (638)
..+|.++ .+.++|++.+|.|.++ +...|||++|+|...+.+ .+.|+||+||....+++.+||||
T Consensus 46 ~d~F~i~--~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 46 TDTFTIE--TPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEE--ESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred eEEeeee--ecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 3455544 6789999999999998 679999999999876655 89999999999999999999997
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.64 E-value=1.2e-07 Score=85.71 Aligned_cols=62 Identities=13% Similarity=0.257 Sum_probs=52.7
Q ss_pred EEEEEeccCCCCCeeEEEEEeCCCC---ceEEeEEEEcccCCc-cEEEEecccccCCCCCCcceEE
Q 006629 131 YKAELKIPASFGDVGAILVESDQLT---EMYLQDIVLDGLPNG-PVNLTCDSWIQPKIVDKQKRIF 192 (638)
Q Consensus 131 ~~v~f~~~~~fG~pgai~v~n~~~~---e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~~~~~~rif 192 (638)
++..|+.+.++|++.+|.|++++.. +|||++|+|.+...| .++|+||+||.....++..|+|
T Consensus 50 ~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~ 115 (116)
T cd00113 50 DTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSL 115 (116)
T ss_pred eEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeec
Confidence 3344457789999999999998875 999999999876655 8999999999998888888876
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.23 E-value=2.2e-06 Score=78.32 Aligned_cols=77 Identities=14% Similarity=0.271 Sum_probs=56.2
Q ss_pred cEEEEEEeeecCCCCCCcccccccccccCCCCCCCCceEEEEEEeccCCCCCeeEEEEEeCC-CCceEEeEEEEcccCCc
Q 006629 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ-LTEMYLQDIVLDGLPNG 170 (638)
Q Consensus 92 ~v~lqlvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~fG~pgai~v~n~~-~~e~fl~~i~l~~~p~g 170 (638)
+|.|+||.++- .++ +..|.+ . ......++|.++ +.++|++-.|.|.|.. .+.|||+.|+|++ |.|
T Consensus 20 ~V~i~L~G~~g--~S~--~~~L~~----~--F~~G~~d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g 85 (109)
T cd02899 20 TIEITLLGSSG--RSN--PKTLSQ----G--FYPGSLKRIRFR---AADVGDINAIILSNTALNDPWYCDYVRIKS-EDG 85 (109)
T ss_pred eEEEEEEECCC--CcC--CEEccC----c--cCCCceEEEEEC---ccccCceEEEEEECCCCCCCceeeEEEEEC-CCC
Confidence 69999997653 222 122322 1 221345678665 7899999999998877 4789999999987 766
Q ss_pred -cEEEEecccccC
Q 006629 171 -PVNLTCDSWIQP 182 (638)
Q Consensus 171 -~i~F~cnsWV~~ 182 (638)
.++||||+|+..
T Consensus 86 ~~~~Fpc~rWla~ 98 (109)
T cd02899 86 KVFAFNVKRWIGY 98 (109)
T ss_pred CEEEEEcceeeCC
Confidence 788999999974
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.87 E-value=4.7e-05 Score=69.79 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=57.4
Q ss_pred cEEEEEEeeecCCCCCCcccccccccccCCCCCCCCceEEEEEEeccCCCCCeeEEEEEeCC---CCceEEeEEEEcccC
Q 006629 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLP 168 (638)
Q Consensus 92 ~v~lqlvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p 168 (638)
+|.|+|+.+.-+ ++ .-.|...... .+....+.|.++ .+.++|++-.|.|+.+. ...|||+.|+|++..
T Consensus 20 ~V~i~l~G~~g~--S~--~~~L~~~~~~---FerG~~d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~ 90 (113)
T cd01753 20 YIYLTLVGTAGE--SE--KQLLDRPGYD---FERGAVDEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPG 90 (113)
T ss_pred EEEEEEEECCCc--cc--CEEcCCCCCc---cCCCCeeEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCC
Confidence 688999876542 22 2223321111 221244567666 77899999999999877 489999999998633
Q ss_pred Cc-cEEEEecccccCC
Q 006629 169 NG-PVNLTCDSWIQPK 183 (638)
Q Consensus 169 ~g-~i~F~cnsWV~~~ 183 (638)
| ..+||||+|+...
T Consensus 91 -~~~~~F~c~rWl~~~ 105 (113)
T cd01753 91 -GDEYHFPCYRWIEGY 105 (113)
T ss_pred -CCEEEEEhHHeECCC
Confidence 5 7889999999775
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.77 E-value=0.00021 Score=65.77 Aligned_cols=85 Identities=14% Similarity=0.262 Sum_probs=58.2
Q ss_pred cEEEEEEeeecCCCCCCcccccccccccCCCCCCCCceEEEEEEeccCCCCCeeEEEEEeCCC---CceEEeEEEEcccC
Q 006629 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQL---TEMYLQDIVLDGLP 168 (638)
Q Consensus 92 ~v~lqlvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~fG~pgai~v~n~~~---~e~fl~~i~l~~~p 168 (638)
.|.++|+-+.- . .+.-.|..+. ...........+|.++ . .++|++-.|.|+.+.. ..|||+.|+|.+..
T Consensus 20 ~V~i~L~G~~g--~--s~~~~L~~~~-~~~~FerGs~d~F~i~--~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~ 91 (120)
T cd01756 20 NVFITLYGENG--D--TGKRKLKKSN-NKNKFERGQTDKFTVE--A-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPG 91 (120)
T ss_pred EEEEEEEeCCC--c--cccEEccCCC-cCCcccCCCeEEEEEE--e-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEECC
Confidence 68888886432 1 2233455430 1112221345678776 4 7899999999998774 78999999998755
Q ss_pred Cc-cEEEEecccccCCC
Q 006629 169 NG-PVNLTCDSWIQPKI 184 (638)
Q Consensus 169 ~g-~i~F~cnsWV~~~~ 184 (638)
.| ..+||||+|+...+
T Consensus 92 ~~~~~~F~~~~Wl~~~~ 108 (120)
T cd01756 92 TGDEYTFPCNRWLDKDE 108 (120)
T ss_pred CceEEEEEeCCccCCCC
Confidence 55 78899999998764
No 12
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.68 E-value=0.00012 Score=67.65 Aligned_cols=48 Identities=13% Similarity=0.409 Sum_probs=41.4
Q ss_pred cCCCCCeeEEEEEeCC---CCceEEeEEEEcccCCc-cEEEEecccccCCCC
Q 006629 138 PASFGDVGAILVESDQ---LTEMYLQDIVLDGLPNG-PVNLTCDSWIQPKIV 185 (638)
Q Consensus 138 ~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~~ 185 (638)
+.++|+.-.|.|+.+. ...|||+.|.|++.+.| ..+||||+|+.....
T Consensus 49 ~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 49 CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 3899999999999877 48999999999987766 789999999986543
No 13
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.64 E-value=0.00034 Score=64.45 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=56.4
Q ss_pred cEEEEEEeeecCCCCCCcccccccccccCCCCCCCCceEEEEEEeccCCCCCeeEEEEEeCC---CCceEEeEEEEcccC
Q 006629 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLP 168 (638)
Q Consensus 92 ~v~lqlvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p 168 (638)
+|.|+|+.+.-+ ++ +-.|.+... .........+|.++ .+.++|++-.|.|..+. ...|||++|+|.+..
T Consensus 20 ~V~i~L~G~~g~--s~--~~~L~~~~~--~~F~rG~~~~f~i~--~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~ 91 (120)
T cd01752 20 KVTITLYGAEGE--SE--PHHLRDPEK--PIFERGSVDSFLLT--TPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQ 91 (120)
T ss_pred EEEEEEEeCCCC--cc--cEEcCCCCc--cceeCCCeeEEEec--CccCCCCccEEEEEECCCCCCCCeEEEEEEEEECC
Confidence 688888875542 21 223332211 11221223455544 67899999999998766 479999999998744
Q ss_pred Cc-cEEEEecccccCCC
Q 006629 169 NG-PVNLTCDSWIQPKI 184 (638)
Q Consensus 169 ~g-~i~F~cnsWV~~~~ 184 (638)
.| ...||||+|+...+
T Consensus 92 t~~~~~F~~~rWl~~~~ 108 (120)
T cd01752 92 TGKKWFFLCNDWLSVEE 108 (120)
T ss_pred CCcEEEEEeCcEECCcC
Confidence 45 78899999998753
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.57 E-value=0.00018 Score=67.72 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=46.2
Q ss_pred CCceEEEEEEeccCCCCCeeEEEEEeCC---CCceEEeEEEEcccCC---c-cEEEEecccccCCC
Q 006629 126 DGNIKYKAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLPN---G-PVNLTCDSWIQPKI 184 (638)
Q Consensus 126 ~~~~~~~v~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p~---g-~i~F~cnsWV~~~~ 184 (638)
...+.|.|+ .+..+|++-.|.|+... ...|||..|+|.+... + ..+||||+|+...+
T Consensus 55 G~~d~F~v~--~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~ 118 (129)
T cd01754 55 GNLDRFSGR--GPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDE 118 (129)
T ss_pred CCccEEEEE--eccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCC
Confidence 345688877 67889999999999866 4799999999987543 2 68999999997654
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=52.58 E-value=72 Score=29.57 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=38.9
Q ss_pred eEEEEEEeccCCCCCeeEEEEEeCCC----------CceEEeEEEEcccCCccEEEEecc
Q 006629 129 IKYKAELKIPASFGDVGAILVESDQL----------TEMYLQDIVLDGLPNGPVNLTCDS 178 (638)
Q Consensus 129 ~~~~v~f~~~~~fG~pgai~v~n~~~----------~e~fl~~i~l~~~p~g~i~F~cns 178 (638)
..|+.-+..+.++|..-.|.++-+.. ..||++.|+|++..++.-...|.+
T Consensus 46 ~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 46 KTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred CEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 35666666899999999999885442 489999999988777766667876
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=26.75 E-value=25 Score=42.65 Aligned_cols=51 Identities=12% Similarity=0.341 Sum_probs=37.2
Q ss_pred EEEEeccCCCCCeeEEEEEeCC---CCceEEeEEEEcccCCc-cEEEEecccccCC
Q 006629 132 KAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLPNG-PVNLTCDSWIQPK 183 (638)
Q Consensus 132 ~v~f~~~~~fG~pgai~v~n~~---~~e~fl~~i~l~~~p~g-~i~F~cnsWV~~~ 183 (638)
+..|+. .++|..--+.|-... ...||++.|.|..--.| ++-|||++|.-+.
T Consensus 1014 ~f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~g 1068 (1295)
T KOG2080|consen 1014 LFKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNG 1068 (1295)
T ss_pred eeEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCc
Confidence 344543 789998888886544 36899999988542256 8999999998665
No 17
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=23.73 E-value=69 Score=31.76 Aligned_cols=54 Identities=30% Similarity=0.476 Sum_probs=33.0
Q ss_pred cccCCCCChhhHHHHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCcccccccccCCCCCCCCCCccC
Q 006629 197 SYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCR 266 (638)
Q Consensus 197 ayLP~~tp~~L~~~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~~~~RpvlGg~~~PYPRR~r 266 (638)
+|+--+.++.-.|..-=+|++---=| |++|.|||+.-|.+ +.|--+| +| ||||=
T Consensus 81 ~~~~v~~~a~~vK~~~i~iEe~hplG--------RL~DlDV~~~~g~~----iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 81 AFLVVDAPALELKRLMIKLEESHPLG--------RLWDIDVLDADGKS----LSRTDLG---LP-PRKCL 134 (165)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCchh--------hheeheeecCCCCC----cCHHHcC---CC-CCeee
Confidence 44445555544566666666554222 89999999755544 4466666 23 78874
Done!