BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006630
         (638 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/596 (74%), Positives = 511/596 (85%), Gaps = 8/596 (1%)

Query: 24  PNTTTSHVESTATTTNQLNSN--LVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRIL 81
           PN   S+      T ++      LV L++  ++C  +   D      EFS DVEK++RIL
Sbjct: 12  PNHRLSNFGDKNCTISERRGGFGLVRLESNRENCTYDQNYD------EFSADVEKVYRIL 65

Query: 82  KKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY 141
           +KFHSR+PKLELALQ SGV +R GLTERV+NRCGDAGNLGYR+++WASKQP Y HSY+VY
Sbjct: 66  RKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVY 125

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           +A+IK L KMR+FGAVWAL+EEMR+E PQ ++  VFV+LMRRFASARMVKKAIEVLDEMP
Sbjct: 126 KAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMP 185

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
           KYGCEPDE VFGCLLDALCKN SVKEAA LF++MR RF P+L+HFTSLLYGWC+EGKL+E
Sbjct: 186 KYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLME 245

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           AKYVLVQ+++AGFEPDIVVYNNLL+GYA  GKM DA++LLKEMRRK C+PN  S+T LIQ
Sbjct: 246 AKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQ 305

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           ALC  +KMEEA R F EM+  GC AD VTYTTLISGFCK  KI + YE+LD+MIQ+G +P
Sbjct: 306 ALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIP 365

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N +TYLHIM AHEKKEELEEC+ELM EMRKIGC PD++ YN+VIRLACKLGE+KE V VW
Sbjct: 366 NPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVW 425

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           NEMEA  LSPG D+FV+M+HGFL Q CL+EACE+FKEMVGRGLLSAPQYGTLK LLNSLL
Sbjct: 426 NEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLL 485

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           RA+K+EM+KDVWSCI+TKGC+LNVYAWTIWIH+LFSNGHVKEACSYCLDMMDA VMPQPD
Sbjct: 486 RAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPD 545

Query: 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
           TFAKLMRGL+KLYNRQIAAEITEKVRKMAAER++TFKMYKRRGER+LKEK K+  D
Sbjct: 546 TFAKLMRGLRKLYNRQIAAEITEKVRKMAAEREMTFKMYKRRGERNLKEKIKEAKD 601


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/647 (68%), Positives = 535/647 (82%), Gaps = 15/647 (2%)

Query: 1   MQRSSSKALSLLTKHRRFSFAP------RPNTTTSHVESTAT---TTNQLNSNLVCLKTK 51
           M R   + + + +K    S +P      +P+ + S + S  +   TT +     + LKT 
Sbjct: 1   MHRFYHRTIHVFSKQSSKSNSPLIFLPKKPHLSLSLISSQTSPNGTTQRGGFGPIHLKTT 60

Query: 52  EDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVI 111
             +   +   D      EFS DVEK++RIL+KFH+R+PKLELALQ SGV++R GL ERV+
Sbjct: 61  PHESAHDRDAD------EFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVL 114

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL 171
           +RCGDAGNLGYR+++WASKQP Y HSY+VY+A+IK+L KMR+FGAVWAL+EEMRKE P +
Sbjct: 115 SRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYM 174

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           +T EVF++LMRRFAS RMVKKA+EVLDEMPKYGCEPDE+VFGCLLDALCKN SVKEAA L
Sbjct: 175 LTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASL 234

Query: 232 FDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           F++MR RF P+LRHFTSLLYGWC+EGK++EAK+VLVQ+K+AGFEPDIVVYNNLL GYAQ 
Sbjct: 235 FEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQA 294

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           GKM DAF+LL EM++  C PNA S+T+LIQ+ C+ EKM+EA R F EM+ SGCEADVVTY
Sbjct: 295 GKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTY 354

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           TTLISGFCK    D+ YEILD MIQ+G  P+QL+YL IM+AHEKKEELEEC+EL+ EMRK
Sbjct: 355 TTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRK 414

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
           IGCVPD++ YN +IRL CKLG+LKEAV +W EM+A  L+PG D++++MVHGFL QGCL+E
Sbjct: 415 IGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVE 474

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           AC+YFKEMV RGLLSAPQYGTLK L N+LLRA+K+EMAK++WSC+ TKGCELNV AWTIW
Sbjct: 475 ACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIW 534

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           IH+LFSNGHVKEACSYCLDMMDAD+MPQPDTFAKLMRGLKKL++RQ+A EITEKVRKMAA
Sbjct: 535 IHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKKLFHRQLAVEITEKVRKMAA 594

Query: 592 ERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRSKAKIL 638
           +RQITFKMYKRRGERDLKEK K ++DGRKRRAR+R W G   K K L
Sbjct: 595 DRQITFKMYKRRGERDLKEKIKAKIDGRKRRARRRGWSGMHKKTKTL 641


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/614 (72%), Positives = 525/614 (85%), Gaps = 9/614 (1%)

Query: 22  PRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRIL 81
           P P    S  ++    TNQ       ++ +E      N TD H +H+EF+ DVEK++RIL
Sbjct: 48  PPPPHCNSTFDNHGCLTNQFG----LIRLQEISI---NHTDDH-THDEFASDVEKVYRIL 99

Query: 82  KKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY 141
           +K+HSR+PKLELAL+ SGVV+RPGLTERV++RCGDAGNL YR+Y WASKQ  +   +D Y
Sbjct: 100 RKYHSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAY 159

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           +A+IK LS+MR+FGAVWAL+EEMR+E P LIT +VFVILMRRFASARMV KA+EVLDEMP
Sbjct: 160 KAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMP 219

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
           KYGCEPDE+VFGCLLDALCKN SVKEAA LF++MR R+KPS++HFTSLLYGWCKEGKL+E
Sbjct: 220 KYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYRWKPSVKHFTSLLYGWCKEGKLME 279

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           AK+VLVQMKD G EPDIVVYNNLL GYAQ GKM DA++LLKEMRRK C+PNA SYTVLIQ
Sbjct: 280 AKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQ 339

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           +LC+ E++EEA R FVEM+ +GC+ADVVTY+TLISGFCK  KI R YE+LD MIQ+G  P
Sbjct: 340 SLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFP 399

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           NQ+ Y HIMLAHEKKEELEEC EL+ EM+KIGC PD+S YN VIRLACKLGE+KE + +W
Sbjct: 400 NQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLW 459

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           NEME++ LSPG D+FV+M++GFL QGCL+EACEYFKEMVGRGL +APQYGTLK L+NSLL
Sbjct: 460 NEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFTAPQYGTLKELMNSLL 519

Query: 502 RAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
           RA+K+EMAKD W+CI  +KGC+LNV AWTIWIH+LFS GHVKEACS+C+DMMD D+MP P
Sbjct: 520 RAEKLEMAKDAWNCITASKGCQLNVSAWTIWIHALFSKGHVKEACSFCIDMMDKDLMPNP 579

Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRK 620
           DTFAKLM GLKKLYNRQ AAEITEKVRKMAA+RQITFKMYKRRGERDLKEKAK++ DGRK
Sbjct: 580 DTFAKLMHGLKKLYNRQFAAEITEKVRKMAADRQITFKMYKRRGERDLKEKAKEKKDGRK 639

Query: 621 RRARQRRWGGGRSK 634
           RRARQR+WGGGR K
Sbjct: 640 RRARQRQWGGGRQK 653


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/541 (78%), Positives = 487/541 (90%)

Query: 77  IFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
           ++RIL+KFHSR+PKLELALQ SGV +R GLTERV+NRCGDAGNLGYR+++WASKQP Y H
Sbjct: 94  VYRILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRH 153

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           SY+VY+A+IK L KMR+FGAVWAL+EEMR+E PQ ++  VFV+LMRRFASARMVKKAIEV
Sbjct: 154 SYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEV 213

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           LDEMPKYGCEPDE VFGCLLDALCKN SVKEAA LF++MR RF P+L+HFTSLLYGWC+E
Sbjct: 214 LDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCRE 273

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GKL+EAKYVLVQ+++AGFEPDIVVYNNLL+GYA  GKM DA++LLKEMRRK C+PN  S+
Sbjct: 274 GKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSF 333

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LIQALC  +KMEEA R F EM+  GC AD VTYTTLISGFCK  KI + YE+LD+MIQ
Sbjct: 334 TTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQ 393

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G +PN +TYLHIM AHEKKEELEEC+ELM EMRKIGC PD++ YN+VIRLACKLGE+KE
Sbjct: 394 QGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKE 453

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
            V VWNEMEA  LSPG D+FV+M+HGFL Q CL+EACE+FKEMVGRGLLSAPQYGTLK L
Sbjct: 454 GVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKEL 513

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           LNSLLRA+K+EM+KDVWSCI+TKGC+LNVYAWTIWIH+LFSNGHVKEACSYCLDMMDA V
Sbjct: 514 LNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGV 573

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQV 616
           MPQPDTFAKLMRGL+KLYNRQIAAEITEKVRKMAAER++TFKMYKRRGER+LKEK K+  
Sbjct: 574 MPQPDTFAKLMRGLRKLYNRQIAAEITEKVRKMAAEREMTFKMYKRRGERNLKEKIKEAK 633

Query: 617 D 617
           D
Sbjct: 634 D 634


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/583 (74%), Positives = 512/583 (87%), Gaps = 4/583 (0%)

Query: 60  TTDTHGSHN----EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCG 115
           TT    +H+    EFS DVEK++RIL+KFH+R+PKLELALQ SGV++R GL ERV++RCG
Sbjct: 82  TTPHESAHDRDADEFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCG 141

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE 175
           DAGNLGYR+++WASKQP Y HSY+VY+A+IK+L KMR+FGAVWAL+EEMRKE P ++T E
Sbjct: 142 DAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPE 201

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF++LMRRFAS RMVKKA+EVLDEMPKYGCEPDE+VFGCLLDALCKN SVKEAA LF++M
Sbjct: 202 VFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM 261

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R RF P+LRHFTSLLYGWC+EGK++EAK+VLVQ+K+AGFEPDIVVYNNLL GYAQ GKM 
Sbjct: 262 RVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMR 321

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DAF+LL EM++  C PNA S+T+LIQ+ C+ EKM+EA R F EM+ SGCEADVVTYTTLI
Sbjct: 322 DAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLI 381

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           SGFCK    D+ YEILD MIQ+G  P+QL+YL IM+AHEKKEELEEC+EL+ EMRKIGCV
Sbjct: 382 SGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCV 441

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD++ YN +IRL CKLG+LKEAV +W EM+A  L+PG D++++MVHGFL QGCL+EAC+Y
Sbjct: 442 PDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDY 501

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           FKEMV RGLLSAPQYGTLK L N+LLRA+K+EMAK++WSC+ TKGCELNV AWTIWIH+L
Sbjct: 502 FKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHAL 561

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           FSNGHVKEACSYCLDMMDAD+MPQPDTFAKLMRGLKKL++RQ+A EITEKVRKMAA+RQI
Sbjct: 562 FSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKKLFHRQLAVEITEKVRKMAADRQI 621

Query: 596 TFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRSKAKIL 638
           TFKMYKRRGERDLKEK K ++DGRKRRAR+R W G   K K L
Sbjct: 622 TFKMYKRRGERDLKEKIKAKIDGRKRRARRRGWSGMHKKTKTL 664


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/627 (71%), Positives = 531/627 (84%), Gaps = 9/627 (1%)

Query: 9   LSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHN 68
           LS+    RRFS     N    H +ST    N L +    ++ +E     N+T D   +H+
Sbjct: 9   LSIRRDFRRFS---SENLPPPHFKST-FDNNALTNQFGFIRLQE--ISINHTDDQ--THD 60

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           EF+ DVEK++RIL+K+HSR+PKLELAL+ SGVV+RPGLTERV+NRCGDAGNL YR+Y WA
Sbjct: 61  EFASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWA 120

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           SKQ  +   +D Y+A+IK LS+MR+FGAVWAL+EEMR+E P LIT +VFVILMRRFASAR
Sbjct: 121 SKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASAR 180

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
           MV KA++VLDEMP YGCEPDE+VFGCLLDAL KN SVKEAA LF+E+R R+KPS++HFTS
Sbjct: 181 MVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTS 240

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LLYGWCKEGKL+EAK+VLVQMKDAG EPDIVVYNNLL GYAQ  KM DA++LLKEMRRKG
Sbjct: 241 LLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKG 300

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C+PNA SYTVLIQ+LC+ E++EEA R FVEM+R+GC+AD+VTY+TLISGFCK  KI R Y
Sbjct: 301 CEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGY 360

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+LD MIQ+G  PNQ+ Y HIM+AHEKKEELEEC EL+ EM+KIGC PD+S YN VIRLA
Sbjct: 361 ELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLA 420

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CKLGE+KE V +WNEME++ LSP  D+FV+M++GFL QGCL+EACEYFKEMVGRGL +AP
Sbjct: 421 CKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFAAP 480

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           QYGTLK L+NSLLRA+K+EMAKD W+CI  +KGC+LNV AWTIWIH+LFS GHVKEACS+
Sbjct: 481 QYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSAWTIWIHALFSKGHVKEACSF 540

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERD 607
           C+ MMD D+MPQPDTFAKLMRGLKKLYNR+ AAEITEKVRKMAA+R+ITFKMYKRRGERD
Sbjct: 541 CIAMMDKDLMPQPDTFAKLMRGLKKLYNREFAAEITEKVRKMAADRKITFKMYKRRGERD 600

Query: 608 LKEKAKKQVDGRKRRARQRRWGGGRSK 634
           LKEKAK++ DGRKRRARQ RWGGGR K
Sbjct: 601 LKEKAKEKKDGRKRRARQCRWGGGRQK 627


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/558 (77%), Positives = 503/558 (90%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           +EF+ DVEK++R+L+KFHSR+PKLELALQ SGVVLR GLTERV+NRCGDAG L Y++++W
Sbjct: 45  DEFASDVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVW 104

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           ASKQP Y H Y+ Y+A+IK LSKM++FGAVWAL+EEMR++   LIT+EVFV++MRRFAS+
Sbjct: 105 ASKQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASS 164

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
           RMV KAIEVLDEMPKYGCEPDE+VFGCLLDALCKN SVKEAA LF++MR RF PSL+HFT
Sbjct: 165 RMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFSPSLKHFT 224

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            LLYGWCKEGKL+EAK+VLVQM++AGFEPDIVVYNNLLSGYA  GKM DAF+LLKE+RRK
Sbjct: 225 CLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRK 284

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GCDPNA SYT+LIQALC  EKM+EA R FVEMERSGC+ADVVTYT L+SGFCK R ID+ 
Sbjct: 285 GCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKG 344

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           Y+IL SMIQ+G +PNQLTYLH+MLAHEKKEELEEC ELMGEM+KIGC+PD+S YNVVIRL
Sbjct: 345 YQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRL 404

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
           ACKLGE+   V+ WNEME + LSPG D+FV+M++GFLG G L+EAC+YFKEMV RGLLS+
Sbjct: 405 ACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGLLSS 464

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
            QYG LK LLN+LLR +K+E+AKD+WSCIVTKGCELNV +WTIWIH+LFSNGHVKEACSY
Sbjct: 465 RQYGILKDLLNALLRGEKLELAKDLWSCIVTKGCELNVDSWTIWIHALFSNGHVKEACSY 524

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERD 607
           CLDMMDAD+MP+P+TFAKLMRGL+KLYNRQ AAEITEKVRKMAA+R +TFKMYKRRGERD
Sbjct: 525 CLDMMDADLMPKPETFAKLMRGLRKLYNRQFAAEITEKVRKMAADRHVTFKMYKRRGERD 584

Query: 608 LKEKAKKQVDGRKRRARQ 625
           L EKAK + DGRKRRAR+
Sbjct: 585 LIEKAKAKKDGRKRRARR 602


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/597 (71%), Positives = 504/597 (84%), Gaps = 18/597 (3%)

Query: 1   MQRSSSKALSLLTKHR-RFSFAPRPNTTTSHVESTATTTNQLNSNL------VCLKTKED 53
           MQR SSK +SLL KH  RF+     +             N L++NL      VCLKT+E 
Sbjct: 1   MQRLSSKTISLLNKHCCRFNLI---HVQLYQKGQEPIDRNPLSNNLRNGFGVVCLKTQE- 56

Query: 54  DCKCNNTTDTHGSH---NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERV 110
               NNT+D   S    +EF+ DVEK++RIL+ FHSR+PKLELALQ SGV +R GLTERV
Sbjct: 57  ----NNTSDRDNSSSKVDEFAKDVEKVYRILRNFHSRVPKLELALQESGVTMRAGLTERV 112

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ 170
           +NRCGDAGNLGYR+++WASKQP Y HSY+ Y+A++K  SKMR+FGAVWAL+EEMRK+   
Sbjct: 113 LNRCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSV 172

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           LIT+E+F++L+RRFASAR+V+KAIEVLDEMPKYGCEPDE+VFGCLLDALCKN SVK+AA 
Sbjct: 173 LITSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAAS 232

Query: 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           LF++MR RF PSLRHFTSLLYGWC+EGKL+EAK+VLVQM++AGFEPDIVV+NNLLS Y+ 
Sbjct: 233 LFEDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSM 292

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            GKMTDAF+LLKEM RKGC+PNANSYT++IQA C  EKM+EA R FVEMER+GCEADVVT
Sbjct: 293 AGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVT 352

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           YT LISGFCK  KI+R Y+ILD+M Q+G +PNQLTYL I+LAHEKKEELEEC+EL+  MR
Sbjct: 353 YTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMR 412

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
            +GCVPD+S YNVVIRLACKLGE+K+ V +WNEMEA+  SP  D+FV+M+HGFLGQGCL+
Sbjct: 413 MVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGCLV 472

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EACEYFKEM+GRGLL+ PQYG LK LLN+LLR +K+ MAKDVWSCIVTKGCELN  AWTI
Sbjct: 473 EACEYFKEMIGRGLLTTPQYGILKELLNALLRGEKLGMAKDVWSCIVTKGCELNADAWTI 532

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           WIHSLFSNGHVKEACSYCLDMM+AD+MP+P+TFAKLMRGL+KLYNR+ AAEITEK++
Sbjct: 533 WIHSLFSNGHVKEACSYCLDMMEADIMPKPETFAKLMRGLRKLYNREFAAEITEKIK 589


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/611 (65%), Positives = 501/611 (81%), Gaps = 10/611 (1%)

Query: 17  RFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEK 76
           RF    R    +  +E     +N +   LVCL+      K +N    +  ++EF+ DVEK
Sbjct: 34  RFDLIHRSFHVSRALEDNFRRSNGIG--LVCLE------KSHNDRTKNSKYDEFASDVEK 85

Query: 77  IFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
            +RIL+KFHSR+PKLELAL  SGV LRPGL ERV+NRCGDAGNLGYR+++WA+KQP Y H
Sbjct: 86  SYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCH 145

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S +VY++++K LSKMR+FGAVW L+EEMRKE PQLI  E+FV+L++RFASA MVKKAIEV
Sbjct: 146 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 205

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           LDEMPK+G EPDE+VFGCLLDALCK+ SVK+AAKLF++MR RF  +LR+FTSLLYGWC+ 
Sbjct: 206 LDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRV 265

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK++EAKYVLVQM +AGFEPDIV Y NLLSGYA  GKM DA++LL++MRR+G +PNAN Y
Sbjct: 266 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY 325

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           TVLIQALC++++MEEA + FVEMER  CEADVVTYT L+SGFCK  KID+CY +LD MI+
Sbjct: 326 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 385

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G++P++LTY+HIM+AHEKKE  EEC+ELM +MR+I   PD+  YNVVIRLACKLGE+KE
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           AV +WNEME   LSPG D+FV+M++G   QGCL+EA ++FKEMV RGL S  QYGTLK L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLL 505

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LN++L+ +K+EMAKDVWSCI +KG CELNV +WTIWIH+LFS G+ KEACSYC++M++ D
Sbjct: 506 LNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMD 565

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
            MPQPDTFAKLM+GLKKLYNR+ A EITEKVR MAAER+++FKMYKRRG +DL EKAK +
Sbjct: 566 FMPQPDTFAKLMKGLKKLYNREFAGEITEKVRNMAAEREMSFKMYKRRGVQDLTEKAKSK 625

Query: 616 VDGRKRRARQR 626
            D R+ + +QR
Sbjct: 626 QD-REGKKKQR 635


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/549 (69%), Positives = 471/549 (85%), Gaps = 3/549 (0%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           +EF+ DVEKI+RIL+ +HSR+PKLEL+L  SG+ LRPGL  RV++RCGDAGNLGYR+++W
Sbjct: 64  DEFAGDVEKIYRILRNYHSRVPKLELSLNESGIDLRPGLIVRVLSRCGDAGNLGYRFFLW 123

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A+KQP Y HSY+V ++++K LSKMR+FGAVW L+EEMRKE P+LI  E+FV+L+RRFASA
Sbjct: 124 ATKQPGYCHSYEVCKSMVKILSKMRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASA 183

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
            MVKKA+EVLDEMPKYG EPDE+VFGCLLDALCKN SVK+A+K+F++MRE+  P+LR+FT
Sbjct: 184 NMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREKIPPNLRYFT 243

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SLLYGWC+EGKL+EAK VLVQMK+AG EPDIVV+ NLLSGYA  GKM DA++LL +MR++
Sbjct: 244 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKR 303

Query: 308 GCDPNANSYTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           G +PNAN YTVLIQALCR EK M+EA R FVEMER GCEAD+VTYT LISGFCK   ID+
Sbjct: 304 GYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 363

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            Y +LD M ++G++P+Q+TY+ I++AHEKKE+ EEC+EL+ +M++IGC PD+  YNVVIR
Sbjct: 364 GYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIR 423

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           LAC   E+KEAV +WNEMEA  LSPG D FV+M++GF  QG LIEAC +FKEMV RG+ S
Sbjct: 424 LACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFS 483

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIV--TKGCELNVYAWTIWIHSLFSNGHVKEA 544
           APQYGTLK+LLN+LLR  K+EMAKDVWSCI   T  CELNV AWTIWIH+LF+ GHVKEA
Sbjct: 484 APQYGTLKSLLNTLLRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALFAKGHVKEA 543

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
           CSYCLDMM+ D+MPQP+T+ KLM+GL KLYNR IAAEITEKV KMA+ER+++FKMYK+RG
Sbjct: 544 CSYCLDMMEMDLMPQPNTYVKLMKGLNKLYNRTIAAEITEKVMKMASEREMSFKMYKKRG 603

Query: 605 ERDLKEKAK 613
           E DL EKAK
Sbjct: 604 EEDLIEKAK 612


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/548 (69%), Positives = 471/548 (85%), Gaps = 3/548 (0%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           +EF+ +VEKI+RIL+  HSR+PKLELAL  SG+ LRPGL  RV++RCGDAGNLGYR+++W
Sbjct: 61  DEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLW 120

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A+KQP Y HSY+V ++++  LSKMR+FGAVW L+EEMRK  P+LI  E+FV+LMRRFASA
Sbjct: 121 ATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASA 180

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
            MVKKA+EVLDEMPKYG EPDE+VFGCLLDALCKN SVKEA+K+F++MRE+F P+LR+FT
Sbjct: 181 NMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFT 240

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SLLYGWC+EGKL+EAK VLVQMK+AG EPDIVV+ NLLSGYA  GKM DA++L+ +MR++
Sbjct: 241 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKR 300

Query: 308 GCDPNANSYTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           G +PN N YTVLIQALCR EK M+EA R FVEMER GCEAD+VTYT LISGFCK   ID+
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 360

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            Y +LD M ++G++P+Q+TY+ IM+AHEKKE+ EEC+EL+ +M++ GC PD+  YNVVIR
Sbjct: 361 GYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIR 420

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           LACKLGE+KEAV +WNEMEA  LSPG D+FV+M++GF  QG LIEAC +FKEMV RG+ S
Sbjct: 421 LACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFS 480

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIV--TKGCELNVYAWTIWIHSLFSNGHVKEA 544
           APQYGTLK+LLN+L+R  K+EMAKDVWSCI   T  CELNV AWTIWIH+L++ GHVKEA
Sbjct: 481 APQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEA 540

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
           CSYCLDMM+ D+MPQP+T+AKLM+GL KLYNR IAAEITEKV KMA+ER+++FKMYK++G
Sbjct: 541 CSYCLDMMEMDLMPQPNTYAKLMKGLNKLYNRTIAAEITEKVVKMASEREMSFKMYKKKG 600

Query: 605 ERDLKEKA 612
           E DL EKA
Sbjct: 601 EEDLIEKA 608


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/578 (67%), Positives = 486/578 (84%), Gaps = 7/578 (1%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           +EF+ +VEKI+RIL+  HSR+PKLELAL  SG+ LRPGL  RV++RCGDAGNLGYR+++W
Sbjct: 61  DEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLW 120

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A+KQP Y HSY+V ++++  LSKMR+FGAVW L+EEMRK  P+LI  E+FV+LMRRFASA
Sbjct: 121 ATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASA 180

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
            MVKKA+EVLDEMPKYG EPDE+VFGCLLDALCKN SVKEA+K+F++MRE+F P+LR+FT
Sbjct: 181 NMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFT 240

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SLLYGWC+EGKL+EAK VLVQMK+AG EPDIVV+ NLLSGYA  GKM DA++L+ +MR++
Sbjct: 241 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKR 300

Query: 308 GCDPNANSYTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           G +PN N YTVLIQALCR EK M+EA R FVEMER GCEAD+VTYT LISGFCK   ID+
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 360

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            Y +LD M ++G++P+Q+TY+ IM+AHEKKE+ EEC+EL+ +M++ GC PD+  YNVVIR
Sbjct: 361 GYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIR 420

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           LACKLGE+KEAV +WNEMEA  LSPG D+FV+M++GF  QG LIEAC +FKEMV RG+ S
Sbjct: 421 LACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFS 480

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIV--TKGCELNVYAWTIWIHSLFSNGHVKEA 544
           APQYGTLK+LLN+L+R  K+EMAKDVWSCI   T  CELNV AWTIWIH+L++ GHVKEA
Sbjct: 481 APQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEA 540

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
           CSYCLDMM+ D+MPQP+T+AKLM+GL KLYNR IAAEITEKV KMA+ER+++FKMYK++G
Sbjct: 541 CSYCLDMMEMDLMPQPNTYAKLMKGLNKLYNRTIAAEITEKVVKMASEREMSFKMYKKKG 600

Query: 605 ERDLKEKAKKQVDGRKRRA---RQRRWG-GGRSKAKIL 638
           E DL EKAK + +   ++     QR  G G RS+AK L
Sbjct: 601 EEDLIEKAKPKGNKEGKKKGTDHQRYKGRGERSRAKAL 638


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/611 (65%), Positives = 502/611 (82%), Gaps = 8/611 (1%)

Query: 17  RFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEK 76
           RF    R    +  +E     +N +   LVCL+   +    +N    +  ++EF+ DVEK
Sbjct: 33  RFDLIHRSFHVSRALEDNFRRSNGIG--LVCLEKNHN----HNDRTKNSKYDEFASDVEK 86

Query: 77  IFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
            +RIL+KFHSR+PKLELAL  SGV LRPGL ERV+NRCGDAGNLGYR+++WA+KQP Y H
Sbjct: 87  AYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCH 146

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S +VY++++K LSKMR+FGAVW L+EEMRKE PQLI  E+FV+L++RFASA MVKKAIEV
Sbjct: 147 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 206

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           LDEMP +G EPDE+VFGCLLDALCK+ SVK+AAKLF++MR RF  +LR+FTSLLYGWC+E
Sbjct: 207 LDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLRFPVNLRYFTSLLYGWCRE 266

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            K++EAKYVLVQMK+AGFEPDIV Y NLLSGYA  GKM DA++LLK+MRR+G +PNA  Y
Sbjct: 267 EKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCY 326

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           TVLIQALC++++MEEA + FVEMER  CEADVVTYT L+SGFCK  KID+CY +LD MI+
Sbjct: 327 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIK 386

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G++P+QLTY+HIM AHEKKE+L EC+ELM +M++I   PD+  YNVVIRLACKLGE+KE
Sbjct: 387 KGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKE 446

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           AV +WNEME   LSPG D+FV++++G   QGCL+EAC++FKEMV RGL S PQYGTLK L
Sbjct: 447 AVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARGLFSVPQYGTLKLL 506

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LN+LL+ +K+EMAKDVWSCI +KG CEL+V +WTIWIH+LFS G+ KEACSYCL+M++ +
Sbjct: 507 LNTLLKDKKLEMAKDVWSCITSKGSCELSVSSWTIWIHALFSKGYEKEACSYCLEMIELE 566

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
            MPQPDTFAKLM+GLKKLY+R+ A EITEKVR MAAE++++FKMYKRRG +DL EKAK +
Sbjct: 567 FMPQPDTFAKLMKGLKKLYHREFAVEITEKVRNMAAEKEMSFKMYKRRGVQDLTEKAKSK 626

Query: 616 VDGRKRRARQR 626
            D R+ + +QR
Sbjct: 627 QD-REGKKKQR 636


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/611 (62%), Positives = 476/611 (77%), Gaps = 42/611 (6%)

Query: 17  RFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEK 76
           RF    R    +  +E     +N +   LVCL+      K +N    +  ++EF+ DVEK
Sbjct: 27  RFDLIHRSFHVSRALEDNFRRSNGIG--LVCLE------KSHNDRTKNSKYDEFASDVEK 78

Query: 77  IFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
            +RIL+KFHSR+PKLELAL  SGV LRPGL ERV+NRCGDAGNLGYR+++WA+KQP Y H
Sbjct: 79  SYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCH 138

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S +VY++++K LSKMR+FGAVW L+EEMRKE PQLI  E+FV+L++RFASA MVKKAIEV
Sbjct: 139 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 198

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           LDEMPK+G EPDE+VFGCLLDALCK+ SVK+AAKLF++MR R                  
Sbjct: 199 LDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRV----------------- 241

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK++EAKYVLVQM +AGFEPDIV Y NLLSGYA  GKM DA++LL++MRR+G +PNAN Y
Sbjct: 242 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY 301

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           TVLIQALC++++MEEA + FVEMER  CEADVVTYT L+SGFCK  KID+CY +LD MI+
Sbjct: 302 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 361

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G++P++LTY+HIM+AHEKKE  EEC+ELM +MR+I   PD+  YNVVIRLACKLGE+KE
Sbjct: 362 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 421

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           AV +WNEME   LSPG D+FV+M++G   QGCL+EA ++FKEM+               L
Sbjct: 422 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEML---------------L 466

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LN++L+ +K+EMAKDVWSCI +KG CELNV +WTIWIH+LFS G+ KEACSYC++M++ D
Sbjct: 467 LNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMD 526

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
            MPQPDTFAKLM+GLKKLYNR+ A EITEKVR MAAER+++FKMYKRRG +DL EKAK +
Sbjct: 527 FMPQPDTFAKLMKGLKKLYNREFAGEITEKVRNMAAEREMSFKMYKRRGVQDLTEKAKSK 586

Query: 616 VDGRKRRARQR 626
            D R+ + +QR
Sbjct: 587 QD-REGKKKQR 596


>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/407 (79%), Positives = 365/407 (89%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           VFGCLLDALCKN SVKEAA LF++MR RF P+L+HFTSLLYGWC+EGKL+EAKYVLVQ++
Sbjct: 87  VFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIR 146

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           +AGFEPDIVVYNNLL+GYA  GKM DA++LLKEMRRK C+PN  S+T LIQALC  +KME
Sbjct: 147 EAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKME 206

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA R F EM+  GC AD VTYTTLISGFCK  KI + YE+LD+MIQ+G +PN +TYLHIM
Sbjct: 207 EAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIM 266

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
            AHEKKEELEEC+ELM EMRKIGC PD++ YN+VIRLACKLGE+KE V VWNEMEA  LS
Sbjct: 267 AAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLS 326

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           PG D+FV+M+HGFL Q CL+EACE+FKEMVGRGLLSAPQYGTLK LLNSLLRA+K+EM+K
Sbjct: 327 PGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSK 386

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           DVWSCI+TKGC+LNVYAWTIWIH+LFSNGHVKEACSYCLDMMDA VMPQPDTFAKLMRGL
Sbjct: 387 DVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGL 446

Query: 571 KKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
           +KLYNRQIAAEITEKVRKMAAER++TFKMYKRRGER+LKEK K+  D
Sbjct: 447 RKLYNRQIAAEITEKVRKMAAEREMTFKMYKRRGERNLKEKIKEAKD 493



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 228/447 (51%), Gaps = 19/447 (4%)

Query: 24  PNTTTSHVESTATTTNQLNSN--LVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRIL 81
           PN   S+      T ++      LV L++  ++C  +   D      EFS DVEK++RIL
Sbjct: 12  PNHRLSNFGDKNCTISERRGGFGLVRLESNRENCTYDQNYD------EFSADVEKVYRIL 65

Query: 82  KKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY 141
           +KFHSR+PKLELALQ SGV    G    +++     G++     ++   +  +  +   +
Sbjct: 66  RKFHSRVPKLELALQESGVAHVFGC---LLDALCKNGSVKEAASLFEDMRIRFTPTLKHF 122

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +L+    +  K      ++ ++R+   +P ++   V+  L+  +A+A  +  A ++L E
Sbjct: 123 TSLLYGWCREGKLMEAKYVLVQIREAGFEPDIV---VYNNLLTGYAAAGKMVDAYDLLKE 179

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRHFTSLLYGWCKEGK 258
           M +  CEP+   F  L+ ALC    ++EA ++F EM+    P+    +T+L+ G+CK GK
Sbjct: 180 MRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGK 239

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +   +L  M   G  P+ + Y ++++ + +  ++ +  EL++EMR+ GC P+ N Y +
Sbjct: 240 ISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNI 299

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I+  C++ +++E  R + EME +G    + T+  +I GF   R +    E    M+ RG
Sbjct: 300 VIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRG 359

Query: 379 IL--PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +L  P   T   ++ +  + E+LE   ++   +   GC  +V  + + I      G +KE
Sbjct: 360 LLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKE 419

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGF 463
           A +   +M  A + P  D+F  ++ G 
Sbjct: 420 ACSYCLDMMDAGVMPQPDTFAKLMRGL 446


>gi|242038267|ref|XP_002466528.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
 gi|241920382|gb|EER93526.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
          Length = 595

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/565 (50%), Positives = 378/565 (66%), Gaps = 10/565 (1%)

Query: 70  FSHDVEKIFRILKKFHSRLPKLELALQHSGV-VLRPGLTERVINRCGDAGNLGYRYYMWA 128
            +   E  +R+L++ HS   +L  AL  SG+    P L + V+ RCG A +L   ++ W 
Sbjct: 23  LASSAEHAYRLLRRHHSDPQRLAAALSASGLDASSPHLLDAVLRRCGAASSLALHFFHWC 82

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           S              L KS S+     +   L         QL+   +   ++RR    R
Sbjct: 83  SPS-LPSPLPSSLALLAKSFSRASSAPSPSLLA----PLPSQLLGPSLLCPVLRRLPQPR 137

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
           ++  A+ +L   P +  +P  F+   LL++L K   V  A +L +E + RF  SLRH+T+
Sbjct: 138 LLPFALSLLSARPDHD-QPALFLS--LLESLSKAGHVVTAEQLVEEPQTRFPLSLRHYTA 194

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LLYGWC++GKL EAK+VL +MK A    D+V +N LL+G+   G+  DAFEL  +M ++G
Sbjct: 195 LLYGWCRQGKLDEAKHVLARMKAADVALDVVAFNTLLAGFVADGRFEDAFELTGQMEQRG 254

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PNA SYT LIQ L    +++EA R FVEM R GC  D VTY TL+S FCK+ KI + Y
Sbjct: 255 CPPNAVSYTTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTLVSTFCKAGKISQGY 314

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E LD++ + G+  +   Y    +AHEKKE+LEEC+ELM  MR+  C PD+  YNVVIRLA
Sbjct: 315 EFLDAISRDGLRVDAAVYHGFFVAHEKKEQLEECLELMERMRECRCPPDLKIYNVVIRLA 374

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+LGE K+A+++WNEME   LSPG D+F +MV+G +GQG L+EAC YFK+MVGRGL  AP
Sbjct: 375 CRLGETKQAMSLWNEMETGGLSPGVDTFAIMVNGLVGQGLLVEACSYFKDMVGRGLFVAP 434

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
           QYG LK LLN+L+R +K+E+AKDVW CI +KGCELNV AWTIWIH+L++  HVKEAC YC
Sbjct: 435 QYGVLKDLLNALVRDEKLELAKDVWECIASKGCELNVSAWTIWIHALYAKKHVKEACLYC 494

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDL 608
           LDM++A VMPQPDTFAKLM+GLKKLYNRQIAAEITEKVRKMA ER ++FKMYKRRG RDL
Sbjct: 495 LDMLEAGVMPQPDTFAKLMKGLKKLYNRQIAAEITEKVRKMAEERHVSFKMYKRRGVRDL 554

Query: 609 KEKAKKQVDGRKRRARQRRWGGGRS 633
           + K K +  G+K+R RQ + G G+S
Sbjct: 555 EAKPKAKRRGQKQR-RQGQRGHGQS 578


>gi|125544731|gb|EAY90870.1| hypothetical protein OsI_12477 [Oryza sativa Indica Group]
          Length = 601

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 290/561 (51%), Positives = 373/561 (66%), Gaps = 7/561 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGV-VLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
            E  +R+L++ HS   +L  AL  SG+    P L + V+ RCG A  L   ++ W S   
Sbjct: 31  AELAYRLLRRHHSDPKRLTAALSGSGLDPTSPRLLDAVLRRCGAASALALHFFHWCSPSL 90

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
                     AL   L+K     +       +     QL++  +   ++RR    R++  
Sbjct: 91  PPPGPLPSSLAL---LAKSFSRASSAPSPSLLAPLPAQLLSPSLLSPVLRRLPPPRLLPF 147

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ +L   P +   P  F+      A  K   V  A +L +E++ R   SLRH+T+LLYG
Sbjct: 148 ALSLLSPRPNHD-HPSLFLSLLESLA--KTGHVAVAEQLVEELQPRLPLSLRHYTALLYG 204

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+ GKL EAK+VL +MK A   PD+VV+N LL+G+   G+  DAFEL +EM R+GC PN
Sbjct: 205 WCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPN 264

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A SYT L+Q L    +++EA R FVEM R GC  D VTY TL++ FCK+ +I + YE LD
Sbjct: 265 AVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLD 324

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M + G+  +   YL   +AHEKKE+LEEC+ELM  MR+  C PD+S YNVVIRLACKLG
Sbjct: 325 VMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRLACKLG 384

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           E K+AV +WNEME   LSPG D+F +MV G +GQG L+EAC YFK+MVGRGL  APQYG 
Sbjct: 385 ETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGYFKDMVGRGLFVAPQYGV 444

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
           LK LLNSL+R QK+E+AKDVW CI+TKGCELNV AWTIWIH+L++  HVKEAC YCLDM+
Sbjct: 445 LKDLLNSLVRDQKLELAKDVWGCIMTKGCELNVGAWTIWIHALYAKKHVKEACMYCLDML 504

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKA 612
           DA +MPQPDTFAKLM+GLKKLYNRQIAAEITEKVRKMA ER ++FKMYKRRG RDL+EK 
Sbjct: 505 DAGLMPQPDTFAKLMKGLKKLYNRQIAAEITEKVRKMAEERHVSFKMYKRRGVRDLEEKP 564

Query: 613 KKQVDGRKRRARQRRWGGGRS 633
           K +    ++R+R R+ G  +S
Sbjct: 565 KAKRKKGQKRSRLRQAGQNQS 585


>gi|326524037|dbj|BAJ97029.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 599

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/576 (48%), Positives = 380/576 (65%), Gaps = 11/576 (1%)

Query: 60  TTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGV-VLRPGLTERVINRCGDAG 118
           +TD    H+  +   E   R+L++  +   +L  AL  SG+    P L + V+ RCG A 
Sbjct: 16  STDAAPDHS-LASSAELAHRLLRRHGADPQRLASALSASGLDPASPRLLDAVLRRCGAAS 74

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP-QLITTEVF 177
           +L   Y+ W S              L K  S+     A  A    +    P  L++  + 
Sbjct: 75  SLALGYFHWCSPSLPSAPLPSSLALLAKCFSR-----ASAAPCPSLLAPLPSHLLSASIL 129

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
             ++RR    R++  A+ +L   P +       +F  LL++L K   V  A +L +E++ 
Sbjct: 130 SPVLRRLPPPRVLPFALSLLSSRPAHD---HPSLFLSLLESLSKTGHVAAAERLVEELQP 186

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           R   SLRH+T+LLYGWC+  KL EAK+VL +MK AG  PD+VV+N LL+G+   G+  DA
Sbjct: 187 RLPLSLRHYTALLYGWCRLAKLDEAKHVLARMKAAGVAPDVVVFNTLLAGFVADGRFEDA 246

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           FEL +EM R+ C PNA SYT L+Q L    +++E  R FVEM R GC  D VTY TL++ 
Sbjct: 247 FELAREMERRDCPPNAVSYTTLMQGLGSKGRVDEVMRVFVEMRRKGCTPDSVTYGTLVTA 306

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           FCK+ ++ + YE LDSM + G+  +   YL   +AHEK+++LEEC+ELM  MR+  C PD
Sbjct: 307 FCKAGRLSQGYEFLDSMSRDGLRVDPGVYLGFFVAHEKEQQLEECLELMERMRECRCPPD 366

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           ++ YNVVIRL+CKLGE K+A+ +WNE E + LSPG D+F +MV+G +GQG L++AC YFK
Sbjct: 367 LNIYNVVIRLSCKLGETKQAIALWNETENSGLSPGVDTFAIMVNGLVGQGSLVDACNYFK 426

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           +MVGRGL  APQYG LK LLN+L+R +K+E+AKDVW CI ++GCELNV AWTIWIH+L++
Sbjct: 427 DMVGRGLFVAPQYGVLKDLLNALVRDEKLELAKDVWGCIASRGCELNVSAWTIWIHALYA 486

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
             HVKEACSYCLDM++A +MPQPDTFAKLM+GLKKLYNRQIAAEITEKVR MA ER ++F
Sbjct: 487 KKHVKEACSYCLDMLEAGLMPQPDTFAKLMKGLKKLYNRQIAAEITEKVRLMAEERHVSF 546

Query: 598 KMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRS 633
           KMYKRRG +DL+EK K +    ++R+R R+   G+S
Sbjct: 547 KMYKRRGVKDLEEKPKSKRRKGQKRSRGRQTVQGQS 582


>gi|414872586|tpg|DAA51143.1| TPA: empty pericarp4 [Zea mays]
          Length = 595

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/574 (50%), Positives = 380/574 (66%), Gaps = 10/574 (1%)

Query: 61  TDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGV-VLRPGLTERVINRCGDAGN 119
           + T  +        E  +R+L++ HS   +L  AL  SG+    P L + V+ RCG A +
Sbjct: 14  SSTGAADPSLVSSAEHAYRLLRRHHSDPQRLSAALSASGLDASSPHLLDAVLRRCGAASS 73

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           L   ++ W S              L KS S+     +   L         QL+   +   
Sbjct: 74  LALHFFHWCSPS-LPSPLPSSLALLAKSFSRASSAPSPSLLA----PLPSQLLGPSLLCP 128

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           ++RR    R++  A+ +L   P +  +P  F+   LL++L K   V  A +L +E++ R 
Sbjct: 129 VLRRLPQPRLLPFALSLLSARPDHD-QPALFLS--LLESLSKAGHVLTAEQLVEELQPRL 185

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
             SLRH+T+LLYGWC++GKL EAK+VL +MK A    D+VV+N LL+G+   G+  DAFE
Sbjct: 186 PLSLRHYTALLYGWCRQGKLDEAKHVLARMKAADVALDVVVFNTLLAGFVAEGRFEDAFE 245

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L  +M ++GC PNA SYT LIQ L    +++EA R FVEM R GC  D VTY TL++ FC
Sbjct: 246 LAGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTLVNTFC 305

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K+ KI + YE LD+M + G+  +   Y    +AHEKKE+LEEC+ELM  MR+  C PD+ 
Sbjct: 306 KAGKISQGYEFLDAMSRDGLRVDAAVYHGFFVAHEKKEQLEECLELMERMRECRCPPDLK 365

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YNVVIRLAC+LGE K+A+ +WNEME+A LSP  D+F ++V G +GQG LIEAC YFK+M
Sbjct: 366 IYNVVIRLACRLGETKQAMTLWNEMESAGLSPVVDTFAIVVSGLVGQGLLIEACSYFKDM 425

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           VGRGL   PQYG LK LLN+L+R +K+E+AKDVW CIV+KGCELNV AWTIWIH+LF+  
Sbjct: 426 VGRGLFVVPQYGVLKDLLNALVRDEKLELAKDVWKCIVSKGCELNVSAWTIWIHALFAKK 485

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM 599
           HVKEAC YCLDM++A +MPQPDTFAKLM+GLKKLYNRQIAAEITEKVRKMA ER ++FKM
Sbjct: 486 HVKEACLYCLDMLEAGLMPQPDTFAKLMKGLKKLYNRQIAAEITEKVRKMAEERHVSFKM 545

Query: 600 YKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRS 633
           YKRRG RDL+EK K +  G+K+R   R+ G G+S
Sbjct: 546 YKRRGVRDLEEKLKAKRRGQKKR-HLRQPGHGQS 578


>gi|115455091|ref|NP_001051146.1| Os03g0728200 [Oryza sativa Japonica Group]
 gi|50428716|gb|AAT77067.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108710874|gb|ABF98669.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113549617|dbj|BAF13060.1| Os03g0728200 [Oryza sativa Japonica Group]
          Length = 601

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/561 (51%), Positives = 372/561 (66%), Gaps = 7/561 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGV-VLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
            E  +R+L++ HS   +L  AL  SG+    P L + V+ RCG A  L   ++ W S   
Sbjct: 31  AELAYRLLRRHHSDPKRLTAALSGSGLDPTSPRLLDAVLRRCGAASALALHFFHWCSPSL 90

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
                     AL   L+K     +       +     QL++  +   ++RR    R++  
Sbjct: 91  PPPGPLPSSLAL---LAKSFSRASSAPSPSLLAPLPAQLLSPSLLSPVLRRLPPPRLLPF 147

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ +L   P +   P  F+      A  K   V  A +L +E++ R   SLRH+T+LLYG
Sbjct: 148 ALSLLSARPNHD-HPSLFLSLLESLA--KTGHVAVAEQLVEELQPRLPLSLRHYTALLYG 204

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+ GKL EAK+VL +MK A   PD+VV+N LL+G+   G+  DAFEL +EM R+GC PN
Sbjct: 205 WCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPN 264

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A SYT L+Q L    +++EA R FVEM R GC  D VTY TL++ FCK+ +I + YE LD
Sbjct: 265 AVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLD 324

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M + G+  +   YL   +AHEKKE+LEEC+ELM  MR+  C PD+S YNVVIRLACKLG
Sbjct: 325 VMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRLACKLG 384

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           E K+AV +WNEME   LSPG D+F +MV G +GQG L+EAC YFK+MVGRGL  APQYG 
Sbjct: 385 ETKQAVALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGYFKDMVGRGLFVAPQYGV 444

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
           LK LLNSL+R QK+E+AKDVW CI+TKGCELN  AWTIWIH+L++  HVKEAC YCLDM+
Sbjct: 445 LKDLLNSLVRDQKLELAKDVWGCIMTKGCELNFGAWTIWIHALYAKKHVKEACMYCLDML 504

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKA 612
           DA +MPQPDTFAKLM+GLKKLYNRQIAAEITEKVRKMA ER ++FKMYKRRG RDL+EK 
Sbjct: 505 DAGLMPQPDTFAKLMKGLKKLYNRQIAAEITEKVRKMAEERHVSFKMYKRRGVRDLEEKP 564

Query: 613 KKQVDGRKRRARQRRWGGGRS 633
           K +    ++R+R R+ G  +S
Sbjct: 565 KAKRKKGQKRSRLRQAGQNQS 585


>gi|357117116|ref|XP_003560320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Brachypodium distachyon]
          Length = 598

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/576 (48%), Positives = 381/576 (66%), Gaps = 9/576 (1%)

Query: 61  TDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGV-VLRPGLTERVINRCGDAGN 119
           TD    H   +   E  +R+L++  S   +L  AL  SG+    P L + V+ RCG A +
Sbjct: 16  TDAASDHC-LASSAELAYRLLRRHSSDPQRLASALSASGLDATSPRLLDAVLRRCGAASS 74

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           L   Y+ W S              L KS S+    G+       +      L+++ +   
Sbjct: 75  LALDYFNWCSPSLPSPPLPSSLALLAKSFSR----GSAAPCPSLLAPLPSSLLSSSILSP 130

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           ++RR    R++  A+ +L   P +  +P  F+   LL++L K   V  A +L +E++ R 
Sbjct: 131 VLRRLPPPRILPFALSLLSSRPDHD-QPSLFLS--LLESLSKTGHVAAAERLVEELQPRL 187

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
             S+RH+T+LLYGWC+ GKL EAK+VL +MK AG  PD+VV+N LL+G+    +  DAFE
Sbjct: 188 PLSIRHYTALLYGWCRLGKLDEAKHVLARMKAAGVAPDVVVFNTLLAGFVAADRFEDAFE 247

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L +EM R+ C PNA SYT L+Q L    +++E  R FVEM R GC  D VTY TL+S FC
Sbjct: 248 LAREMERRDCPPNAVSYTTLMQGLGSRGRVDEVMRVFVEMRRKGCAPDSVTYGTLVSAFC 307

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K+ ++ + YE LD+M +  +  +   YL   +AHEKKE+LEEC+ELM  MR+  C PD+ 
Sbjct: 308 KAGRLSQGYEFLDAMSRDALRVDPGVYLGFFVAHEKKEQLEECLELMERMRECRCPPDLG 367

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YNVV+RL+CKLGE K+A+ +WNEME + LSPG D+F +MV+G +GQG L++AC +FK+M
Sbjct: 368 IYNVVLRLSCKLGETKQAMALWNEMENSGLSPGVDTFAIMVNGLVGQGSLVDACSFFKDM 427

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           VGRGL  APQYG LK LLN+L+R +K+E+AKDVW CIV++GCELNV AWTIWIH+L++  
Sbjct: 428 VGRGLFVAPQYGVLKDLLNALVRDEKLELAKDVWGCIVSRGCELNVGAWTIWIHALYAKK 487

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM 599
           HVK+ACSYCLDM++A +MPQPDTFAKLM+GLKKLYNRQIAAEITEKVR MA ER ++FKM
Sbjct: 488 HVKDACSYCLDMLEAGLMPQPDTFAKLMKGLKKLYNRQIAAEITEKVRMMAEERHVSFKM 547

Query: 600 YKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRSKA 635
           YKRRG +DL+ K K +  G  +R+R R+   G+S  
Sbjct: 548 YKRRGVKDLEVKPKSKRKGGHKRSRGRQPVQGQSSG 583


>gi|222625312|gb|EEE59444.1| hypothetical protein OsJ_11623 [Oryza sativa Japonica Group]
          Length = 589

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/413 (61%), Positives = 313/413 (75%)

Query: 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           K   V  A +L +E++ R   SLRH+T+LLYGWC+ GKL EAK+VL +MK A   PD+VV
Sbjct: 161 KTGHVAVAEQLVEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVV 220

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           +N LL+G+   G+  DAFEL +EM R+GC PNA SYT L+Q L    +++EA R FVEM 
Sbjct: 221 FNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMR 280

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
           R GC  D VTY TL++ FCK+ +I + YE LD M + G+  +   YL   +AHEKKE+LE
Sbjct: 281 RKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLE 340

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           EC+ELM  MR+  C PD+S YNVVIRLACKLGE K+AV +WNEME   LSPG D+F +MV
Sbjct: 341 ECLELMERMRECRCPPDLSIYNVVIRLACKLGETKQAVALWNEMETNELSPGVDTFAIMV 400

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G +GQG L+EAC YFK+MVGRGL  APQYG LK LLNSL+R QK+E+AKDVW CI+TKG
Sbjct: 401 TGLVGQGVLVEACGYFKDMVGRGLFVAPQYGVLKDLLNSLVRDQKLELAKDVWGCIMTKG 460

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           CELN  AWTIWIH+L++  HVKEAC YCLDM+DA +MPQPDTFAKLM+GLKKLYNRQIAA
Sbjct: 461 CELNFGAWTIWIHALYAKKHVKEACMYCLDMLDAGLMPQPDTFAKLMKGLKKLYNRQIAA 520

Query: 581 EITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRS 633
           EITEKVRKMA ER ++FKMYKRRG RDL+EK K +    ++R+R R+ G  +S
Sbjct: 521 EITEKVRKMAEERHVSFKMYKRRGVRDLEEKPKAKRKKGQKRSRLRQAGQNQS 573


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 143/408 (35%), Positives = 241/408 (59%), Gaps = 4/408 (0%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           LE AL  +G+ + P + E V+ R  +AG L YR++ WASKQ NYVHS   Y ++I+SL+K
Sbjct: 9   LETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAK 68

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           +R++  VW L+  MR +  +++  E F I+MR++A A+ V++A+   + M KY  +P+  
Sbjct: 69  IRQYQMVWDLVNAMRNK--EILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVA 126

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            F  LL ALCK+ +V++A ++FD M+++F P  + ++ L+ GW +   L +A+ +  +M 
Sbjct: 127 AFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMI 186

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           D+G  PD V Y+ ++    + G++ +A E++KEM    C P++  Y+VL+       ++E
Sbjct: 187 DSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIE 246

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A   F+EMER+G  ADV  Y  LIS FCK+ K+   Y +L  M  +G+ PN  T   I+
Sbjct: 247 DAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIII 306

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
            +   + E +E  ++   M K+ C PDV +Y ++I++ C   EL  A+ +W  M+     
Sbjct: 307 NSLIGRGETDEAFKIFRRMIKV-CEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFV 365

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
           P   +F V+++G    G   +AC   +EM+ +G+  S   +G L+ LL
Sbjct: 366 PSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLL 413



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 182/381 (47%), Gaps = 4/381 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++++L K    +    L + MR +   ++  F  ++  + +  K+ EA Y    M+ 
Sbjct: 59  YHSMIESLAKIRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEK 118

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
              +P++  +N LLS   +   +  A E+   M+ +   P++ +Y++LI+   R   + +
Sbjct: 119 YNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFV-PDSKTYSILIEGWGRAPNLPK 177

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   + EM  SGC  D VTY+ ++   CK+ ++D   EI+  M      P+   Y  ++ 
Sbjct: 178 AREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVH 237

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +  +  +E+ V    EM + G + DV+ YN +I   CK  ++K    V  +M+   ++P
Sbjct: 238 TYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNP 297

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + +  ++++  +G+G   EA + F+ M+    +  P   +   ++      ++++MA  
Sbjct: 298 NSRTCNIIINSLIGRGETDEAFKIFRRMIK---VCEPDVDSYTMIIKMFCGRKELDMALK 354

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           +W  +  K    +++ +++ I+ L   G+  +AC    +M++  + P   TF +L   L 
Sbjct: 355 IWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLI 414

Query: 572 KLYNRQIAAEITEKVRKMAAE 592
           K   + +   + EK+  +  E
Sbjct: 415 KEGRKDVLKFLQEKMNLLVKE 435


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 240/430 (55%), Gaps = 14/430 (3%)

Query: 59  NTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG 118
           ++ +T  S N+ S D +KI +IL KF     K+E  L  + V L P L E V+ +  +AG
Sbjct: 53  SSVETQVSANDVSQDADKICKILSKFTD--SKVETLLNEASVKLSPALIEEVLKKLSNAG 110

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
            L    + WA  Q  + H+   Y ALI+SL K+++F  +W L+++M+++K  L++ + F 
Sbjct: 111 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKK--LLSKDTFA 168

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
           ++ RR+A AR VK+AI    +M  YG + +   F  +LD L K+ +V +A K+FD+M++ 
Sbjct: 169 LISRRYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKK 228

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           RF+P ++ +T LL GW +E  L+    V  +MKD GFEPD+V Y  +++ Y +  K  +A
Sbjct: 229 RFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEA 288

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
                EM ++ C P+ + +  LI  L   +K+ +A   F   + SG   +  TY  L+  
Sbjct: 289 VRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 348

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGC 414
           +C S++++  ++ +D M  +GI PN  TY   LH ++  ++ +E  E  +      K+ C
Sbjct: 349 YCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQ------KMSC 402

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P VS Y +++R+ C    L  A+ +W+EM+   + PG   F  ++     +  L EACE
Sbjct: 403 EPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 462

Query: 475 YFKEMVGRGL 484
           YF EM+  G+
Sbjct: 463 YFNEMLDVGI 472



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 143/281 (50%), Gaps = 13/281 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++  LSK R  G    + ++M+K++  P +   + + IL+  +     + +  EV  
Sbjct: 202 FNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDI---KSYTILLEGWGQELNLLRVNEVYG 258

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           EM   G EPD   +G +++A CK     EA + F+EM +R  KPS   F SL+ G   E 
Sbjct: 259 EMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEK 318

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL +A     + K +GF  +   YN L+  Y    +M DAF+ + EMR KG  PNA +Y 
Sbjct: 319 KLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYD 378

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +++  L RM++ +EA   + +M    CE  V TY  ++  FC   ++D   +I D M  +
Sbjct: 379 IILHHLIRMQRTKEAYEVYQKM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGK 435

Query: 378 GILP--NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G+LP  +  + L   L HE K  L+E  E   EM  +G  P
Sbjct: 436 GVLPGMHMFSSLITALCHENK--LDEACEYFNEMLDVGIRP 474



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 169/359 (47%), Gaps = 5/359 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L+++L K    K    L D+M+++   S   F  +   + +  K+ EA     +M+D
Sbjct: 133 YNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISRRYARARKVKEAITAFHKMED 192

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            GF+ +   +N +L   ++   + DA ++  +M++K  +P+  SYT+L++   +   +  
Sbjct: 193 YGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLR 252

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
            N  + EM+  G E DVV Y  +I+ +CK++K D      + M QR   P+   +  ++ 
Sbjct: 253 VNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLIN 312

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               +++L + +E     +  G   +   YN ++   C    +++A    +EM +  + P
Sbjct: 313 GLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRSKGIGP 372

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++ +++H  +      EA E +++M        P   T + ++      ++++MA  
Sbjct: 373 NARTYDIILHHLIRMQRTKEAYEVYQKMS-----CEPTVSTYEIMVRMFCNKERLDMAIK 427

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +W  +  KG    ++ ++  I +L     + EAC Y  +M+D  + P    F++L + L
Sbjct: 428 IWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLKQTL 486


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 260/469 (55%), Gaps = 8/469 (1%)

Query: 33  STATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLE 92
           S+AT   + N  +  +  +   C  +  +    S +E   DV  + + + K     P+L 
Sbjct: 27  SSATVWVRFNMTIRIINRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLV 86

Query: 93  L--ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           L  AL  SG+ +   + E V+NR  +AG L YR++ W+ KQ +Y HS   Y  +I+S +K
Sbjct: 87  LDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAK 146

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           +R++  +W L+  MRK+K  ++  E F I+MR++A A+ V +AI   + M KY   P+  
Sbjct: 147 IRQYKLMWDLINAMRKKK--MLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLV 204

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            F  LL ALCK+ +V++A ++F+ MR+RF P  + ++ LL GW KE  L +A+ V  +M 
Sbjct: 205 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMI 264

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           DAG  PDIV Y+ ++    + G++ +A  +++ M    C P    Y+VL+       ++E
Sbjct: 265 DAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLE 324

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA   F+EMERSG +ADV  + +LI  FCK+ ++   Y +L  M  +G+ PN  +  +I+
Sbjct: 325 EAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKS-CNII 383

Query: 391 LAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           L H  ++ E +E  ++  +M K+ C PD   Y +VI++ C+  E++ A  VW  M    +
Sbjct: 384 LRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGV 442

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTLKALL 497
            P   +F V+++G   +    +AC   +EM+  G+  S   +G L+ LL
Sbjct: 443 FPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLL 491



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 181/381 (47%), Gaps = 4/381 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++++  K    K    L + MR++   ++  F  ++  + +  K+ EA Y    M+ 
Sbjct: 137 YHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEK 196

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
               P++V +N LLS   +   +  A E+ + MR +   P++ +Y++L++   +   + +
Sbjct: 197 YDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFT-PDSKTYSILLEGWGKEPNLPK 255

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   F EM  +GC  D+VTY+ ++   CK+ ++D    I+ SM      P    Y  ++ 
Sbjct: 256 AREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVH 315

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +  +  LEE V+   EM + G   DV+ +N +I   CK   +K    V  EM++  ++P
Sbjct: 316 TYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTP 375

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + S  +++   + +G   EA + F++M+    +  P   T   ++      +++E A  
Sbjct: 376 NSKSCNIILRHLIERGEKDEAFDVFRKMIK---VCEPDADTYTMVIKMFCEKKEMETADK 432

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           VW  +  KG   +++ +++ I+ L      ++AC    +M++  + P   TF +L + L 
Sbjct: 433 VWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLI 492

Query: 572 KLYNRQIAAEITEKVRKMAAE 592
           K     +   + EK+  +  E
Sbjct: 493 KEEREDVLKFLNEKMNVLVNE 513



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 115/251 (45%), Gaps = 16/251 (6%)

Query: 130 KQPNYVHSYDVYRALIKS------------LSKMRKFGAVWALMEEMRKEKPQLI--TTE 175
           K+PN   + +V+R +I +            +  + K G V   +  +R   P +   TT 
Sbjct: 249 KEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF 308

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           ++ +L+  + +   +++A++   EM + G + D  VF  L+ A CK + +K   ++  EM
Sbjct: 309 IYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEM 368

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           + +   P+ +    +L    + G+  EA  V  +M     EPD   Y  ++  + +  +M
Sbjct: 369 KSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMVIKMFCEKKEM 427

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A ++ K MR+KG  P+ ++++VLI  LC     ++A     EM   G     VT+  L
Sbjct: 428 ETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRL 487

Query: 355 ISGFCKSRKID 365
                K  + D
Sbjct: 488 RQLLIKEERED 498


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 248/436 (56%), Gaps = 8/436 (1%)

Query: 66  SHNEFSHDVEKIFRILKKFHSRLPKLEL--ALQHSGVVLRPGLTERVINRCGDAGNLGYR 123
           S +E   DV  + + + K     P+L L  AL  SG+ +   + E V+NR  +AG L YR
Sbjct: 24  SSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYR 83

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ W+ KQ +Y HS   Y  +I+S +K+R++  +W L+  MRK+K  ++  E F I+MR+
Sbjct: 84  FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKK--MLNVETFCIVMRK 141

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
           +A A+ V +AI   + M KY   P+   F  LL ALCK+ +V++A ++F+ MR+RF P  
Sbjct: 142 YARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDS 201

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
           + ++ LL GW KE  L +A+ V  +M DAG  PDIV Y+ ++    + G++ +A  +++ 
Sbjct: 202 KTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRS 261

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M    C P    Y+VL+       ++EEA   F+EMERSG +ADV  + +LI  FCK+ +
Sbjct: 262 MDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANR 321

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYN 422
           +   Y +L  M  +G+ PN  +  +I+L H  ++ E +E  ++  +M K+ C PD   Y 
Sbjct: 322 MKNVYRVLKEMKSKGVTPNSKS-CNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYT 379

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           +VI++ C+  E++ A  VW  M    + P   +F V+++G   +    +AC   +EM+  
Sbjct: 380 MVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEM 439

Query: 483 GLL-SAPQYGTLKALL 497
           G+  S   +G L+ LL
Sbjct: 440 GIRPSGVTFGRLRQLL 455



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 174/362 (48%), Gaps = 4/362 (1%)

Query: 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           L + MR++   ++  F  ++  + +  K+ EA Y    M+     P++V +N LLS   +
Sbjct: 120 LINAMRKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK 179

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
              +  A E+ + MR +   P++ +Y++L++   +   + +A   F EM  +GC  D+VT
Sbjct: 180 SKNVRKAQEVFENMRDRFT-PDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVT 238

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y+ ++   CK+ ++D    I+ SM      P    Y  ++  +  +  LEE V+   EM 
Sbjct: 239 YSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEME 298

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + G   DV+ +N +I   CK   +K    V  EM++  ++P + S  +++   + +G   
Sbjct: 299 RSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKD 358

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA + F++M+    +  P   T   ++      +++E A  VW  +  KG   +++ +++
Sbjct: 359 EAFDVFRKMIK---VCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSV 415

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            I+ L      ++AC    +M++  + P   TF +L + L K     +   + EK+  + 
Sbjct: 416 LINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLV 475

Query: 591 AE 592
            E
Sbjct: 476 NE 477



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 17/254 (6%)

Query: 127 WASKQPNYVHSYDVYRALIKS------------LSKMRKFGAVWALMEEMRKEKPQLI-- 172
           W  K+PN   + +V+R +I +            +  + K G V   +  +R   P +   
Sbjct: 211 WG-KEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKP 269

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           TT ++ +L+  + +   +++A++   EM + G + D  VF  L+ A CK + +K   ++ 
Sbjct: 270 TTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 329

Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            EM+ +   P+ +    +L    + G+  EA  V  +M     EPD   Y  ++  + + 
Sbjct: 330 KEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMVIKMFCEK 388

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            +M  A ++ K MR+KG  P+ ++++VLI  LC     ++A     EM   G     VT+
Sbjct: 389 KEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 448

Query: 352 TTLISGFCKSRKID 365
             L     K  + D
Sbjct: 449 GRLRQLLIKEERED 462


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 240/430 (55%), Gaps = 14/430 (3%)

Query: 59  NTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG 118
           ++ +T  S N+ S D E+I +IL KF     K+E  L  + V L P L E V+ +  +AG
Sbjct: 51  SSVETQVSANDASQDAERICKILTKFTD--SKVETLLNEASVKLSPALIEEVLKKLSNAG 108

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
            L    + WA  Q  + H+   Y ALI+SL K+++F  +W+L+++M+ +K  L++ E F 
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK--LLSKETFA 166

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
           ++ RR+A AR VK+AI    +M ++G + +   F  +LD L K+ +V +A K+FD+M++ 
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           RF+P ++ +T LL GW +E  L+    V  +MKD GFEPD+V Y  +++ + +  K  +A
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
                EM ++ C P+ + +  LI  L   +K+ +A   F   + SG   +  TY  L+  
Sbjct: 287 IRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGC 414
           +C S++++  Y+ +D M  +G+ PN  TY   LH ++  ++ +E  E  + M       C
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM------SC 400

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P VS Y +++R+ C    L  A+ +W+EM+   + PG   F  ++     +  L EACE
Sbjct: 401 EPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460

Query: 475 YFKEMVGRGL 484
           YF EM+  G+
Sbjct: 461 YFNEMLDVGI 470



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 144/281 (51%), Gaps = 13/281 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ +LSK R  G    + ++M+K++  P + +   + IL+  +     + +  EV  
Sbjct: 200 FNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKS---YTILLEGWGQELNLLRVDEVNR 256

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           EM   G EPD   +G +++A CK    +EA + F+EM +R  KPS   F SL+ G   E 
Sbjct: 257 EMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEK 316

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL +A     + K +GF  +   YN L+  Y    +M DA++ + EMR KG  PNA +Y 
Sbjct: 317 KLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYD 376

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +++  L RM++ +EA   +  M    CE  V TY  ++  FC   ++D   +I D M  +
Sbjct: 377 IILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGK 433

Query: 378 GILP--NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G+LP  +  + L   L HE K  L+E  E   EM  +G  P
Sbjct: 434 GVLPGMHMFSSLITALCHENK--LDEACEYFNEMLDVGIRP 472



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 5/179 (2%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           SK   +      Y AL+ +    ++    +  ++EMR  K        + I++      +
Sbjct: 328 SKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRL-KGVGPNARTYDIILHHLIRMQ 386

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K+A EV   M    CEP    +  ++   C    +  A K++DEM+ +   P +  F+
Sbjct: 387 RSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFS 443

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           SL+   C E KL EA     +M D G  P   +++ L       G+     +L+ +M R
Sbjct: 444 SLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDR 502


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 147/436 (33%), Positives = 246/436 (56%), Gaps = 8/436 (1%)

Query: 66  SHNEFSHDVEKIFRILKKFHSRLPKLEL--ALQHSGVVLRPGLTERVINRCGDAGNLGYR 123
           S +E   DV  + + + K     P+L +  AL  SG+ + P + E V+ R  +AG L YR
Sbjct: 25  SSSEQVRDVADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVLYRFRNAGLLAYR 84

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ W+ KQ +Y HS   Y  +I+S +K+R++  +W L+  M K+K  ++  E F I+MR+
Sbjct: 85  FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMKKK--MLNVETFCIVMRK 142

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
           +A A+ V +AI   + M KY   P+   F  LL ALCK+ +V++A ++F+ MR+RF P  
Sbjct: 143 YARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMRDRFTPDS 202

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
           + ++ LL GW KE  L +A+ V  +M DAG  PDIV Y+ ++    + G++ +A  +++ 
Sbjct: 203 KTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEALGIVRS 262

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M    C P    Y+VL+       ++EEA   F+EMERSG +ADV  + +LI  FCK+ +
Sbjct: 263 MDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNR 322

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYN 422
           +   Y +L  M  +G+ PN  +  +I+L H   + E +E  ++  +M K+ C PD   Y 
Sbjct: 323 MKNVYRVLKEMKSKGVTPNSKS-CNIILRHLIDRGEKDEAFDVFRKMIKV-CEPDADTYT 380

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I++ C+  E++ A  VW  M    + P   +F V+++G   +    +AC   +EM+  
Sbjct: 381 MMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEM 440

Query: 483 GL-LSAPQYGTLKALL 497
           G+  S   +G L+ LL
Sbjct: 441 GIRPSGATFGRLRQLL 456



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 180/381 (47%), Gaps = 4/381 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++++  K    K    L + M ++   ++  F  ++  + +  K+ EA Y    M+ 
Sbjct: 102 YHMMIESTAKIRQYKLMWDLINAMMKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEK 161

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
               P++V +N LLS   +   +  A E+ + MR +   P++ +Y++L++   +   + +
Sbjct: 162 YDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMRDRFT-PDSKTYSILLEGWGKEPNLPK 220

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   F EM  +G   D+VTY+ ++   CK+ ++D    I+ SM      P    Y  ++ 
Sbjct: 221 AREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVH 280

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +  +  LEE V+   EM + G   DV+ +N +I   CK   +K    V  EM++  ++P
Sbjct: 281 TYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTP 340

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + S  +++   + +G   EA + F++M+    +  P   T   ++      +++E A  
Sbjct: 341 NSKSCNIILRHLIDRGEKDEAFDVFRKMIK---VCEPDADTYTMMIKMFCEKKEMETADK 397

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           VW  +  KG   +++ +++ I+ L    + ++AC    +M++  + P   TF +L + L 
Sbjct: 398 VWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEMGIRPSGATFGRLRQLLL 457

Query: 572 KLYNRQIAAEITEKVRKMAAE 592
           K     +   + EK+  +  E
Sbjct: 458 KEDREDVLKFLNEKMNVLVNE 478



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 158/322 (49%), Gaps = 18/322 (5%)

Query: 133 NYVHSYDV------YRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFA 185
           N +  YD+      +  L+ +L K +       + E MR    P    ++ + IL+  + 
Sbjct: 157 NVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMRDRFTPD---SKTYSILLEGWG 213

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLR 244
               + KA EV  EM   G  PD   +  ++D LCK   V EA  +   M     KP+  
Sbjct: 214 KEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF 273

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++ L++ +  E +L EA    ++M+ +G + D+ V+N+L+  + +  +M + + +LKEM
Sbjct: 274 IYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEM 333

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           + KG  PN+ S  ++++ L    + +EA   F +M +  CE D  TYT +I  FC+ +++
Sbjct: 334 KSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIKV-CEPDADTYTMMIKMFCEKKEM 392

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +   ++   M ++G+ P+  T+  ++    ++   ++   L+ EM ++G  P  + +  +
Sbjct: 393 ETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEMGIRPSGATFGRL 452

Query: 425 IRLACK------LGELKEAVNV 440
            +L  K      L  L E +NV
Sbjct: 453 RQLLLKEDREDVLKFLNEKMNV 474


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 142/412 (34%), Positives = 235/412 (57%), Gaps = 6/412 (1%)

Query: 89  PKLEL--ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIK 146
           PKLEL  +L  SG+ + P + E V+ R  +AG L Y+++ WA KQ NY HS   Y  +I+
Sbjct: 26  PKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYTHSIRAYHTMIE 85

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
           SL+K+R++  +W L+ +MR  K  ++  E F I+MR++A ++ VK+A+   + M KY   
Sbjct: 86  SLAKIRQYQIMWDLVNKMRSLK--ILNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVP 143

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           P+   F  LL ALCK+ +V +A ++F+ M+++F P  + ++ LL GW K   L +A+ + 
Sbjct: 144 PNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIF 203

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M D G +PDIV Y  ++    + G++ +A  ++KEM    C P +  Y+VL+      
Sbjct: 204 REMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIE 263

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            ++E+A   F++MER+  EADV  Y  LI  FCK  K+   Y +L+ M  +GI PN  T 
Sbjct: 264 NRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTC 323

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             I+ +     + +E   +   M K+ C PD   Y ++I++ C+  +L+ A+ VW  M  
Sbjct: 324 NIILNSLISCGDTDEAFRVFRRMIKV-CDPDADTYTMMIKMFCENDKLEMALKVWKYMRL 382

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
               P   +F V+++G   +G   +AC   +EM+ +G+  S+  +G LK LL
Sbjct: 383 KQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQLL 434



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 176/381 (46%), Gaps = 4/381 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++++L K    +    L ++MR     ++  F  ++  + +  K+ EA Y    M+ 
Sbjct: 80  YHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYARSQKVKEAVYTFNIMEK 139

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
               P++  +N+LLS   +   +  A E+   M+ +   P++ +Y++L++   +   + +
Sbjct: 140 YDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFI-PDSKTYSILLEGWGKAPNLPK 198

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   F EM   GC+ D+VTY  ++   CK+ ++D    I+  M      P    Y  ++ 
Sbjct: 199 AREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVH 258

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +  +  +E+ V    +M +     DV+ YN +I   CK+ +LK A  V NEM+   + P
Sbjct: 259 TYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRP 318

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + +  ++++  +  G   EA   F+ M+    +  P   T   ++       K+EMA  
Sbjct: 319 NSRTCNIILNSLISCGDTDEAFRVFRRMIK---VCDPDADTYTMMIKMFCENDKLEMALK 375

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           VW  +  K    +++ +++ I+ L   G+  +AC    +M++  + P   TF KL + L 
Sbjct: 376 VWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQLLI 435

Query: 572 KLYNRQIAAEITEKVRKMAAE 592
           K     +   + EK+  +  E
Sbjct: 436 KEGREDVLEFLQEKMNLLVKE 456


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 230/408 (56%), Gaps = 4/408 (0%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           L  AL  +G+ + P + E V+ R  +AG + YR++ WA KQ +Y HS   Y  +I+SL+K
Sbjct: 9   LHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAK 68

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           +R++  +W L+  M++++  ++  E F I+MR++A A+ +++A+   + M KY   P+  
Sbjct: 69  IRQYQIMWDLINAMKRKR--MLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLA 126

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            F  L  ALCK+ +V++A ++FD  ++RF P  + +T LL GW K   L +A+ +  +M 
Sbjct: 127 AFNGLFSALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMV 186

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           D G  PDIV Y  ++    + G++ +A +++KEM    C P +  Y+VLI       ++E
Sbjct: 187 DVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIE 246

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A   F+ ME++G +ADV  Y  LI  FCK  K    Y +L+ M  +G+ PN  T   I+
Sbjct: 247 DAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIIL 306

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                + E +E   +   M K+ C PD   Y ++I++ C+  EL+ A+ VW  M+     
Sbjct: 307 NNLIARGETDEAFRVFRRMIKV-CEPDADTYTMMIKMFCERNELEMALKVWKYMKKKHFV 365

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
           P   +F V+++G   +G +  AC   ++M+ +G+  S   +G L+ LL
Sbjct: 366 PSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLL 413



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 189/422 (44%), Gaps = 7/422 (1%)

Query: 172 ITTEVFVILMRRFASARMVK-KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           ++ E+   ++RRF +A MV  +  E  ++   Y        +  ++++L K    +    
Sbjct: 20  VSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVR--AYHTMIESLAKIRQYQIMWD 77

Query: 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           L + M+ +   ++  F  ++  + +  KL EA Y    M+     P++  +N L S   +
Sbjct: 78  LINAMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCK 137

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
              +  A E+    + +   P++ +YT+L++   +   + +A   F EM   GC  D+VT
Sbjct: 138 SKNVRKAQEIFDSSKDRFV-PDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVT 196

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  ++   CK+ ++D   +I+  M      P    Y  ++  +  +  +E+ V+    M 
Sbjct: 197 YGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGME 256

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           K G   DV+ YN +I   CK+ + K    V NEM+   + P + +  ++++  + +G   
Sbjct: 257 KNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETD 316

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA   F+ M+    +  P   T   ++       ++EMA  VW  +  K    +++ +++
Sbjct: 317 EAFRVFRRMIK---VCEPDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSV 373

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            I+ L   G V  AC    DM++  + P   TF +L   L K     +   + +K+  + 
Sbjct: 374 LINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGREDVLEFLQQKINVLI 433

Query: 591 AE 592
            E
Sbjct: 434 KE 435


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 245/448 (54%), Gaps = 20/448 (4%)

Query: 73  DVEKIFRILKKF-HSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ 131
           D   I R+L K  +S + KL L    +   + P L   V+ R  +AG L   ++ WA KQ
Sbjct: 84  DTRNICRLLSKNPNSSIEKLLLG---ASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQ 140

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
             ++++ + Y ALI SL K+++F  +W L+ +M+++   ++T E F ++ RR+A +  VK
Sbjct: 141 KGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKG--VLTKETFALISRRYARSGKVK 198

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLL 250
           +A+   ++M K+G + +   F  LLD L K+  V  A  +FD+M+  RF P ++ +T LL
Sbjct: 199 EAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILL 258

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            GW +E  L++   V  +MKD GFEPD+V Y  L++ Y ++ K  DA EL +EM  K C 
Sbjct: 259 EGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQ 318

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+ + +  LI  L  + ++ EA   F   + SG   +  TY  ++  +C S +ID  Y +
Sbjct: 319 PSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRM 378

Query: 371 LDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           +D M + G+ PN  TY   LH ++  EK  E     E M    +  C P VS Y++++R+
Sbjct: 379 VDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEE--CEPTVSTYDIIVRM 436

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LS 486
            C + +++ A+ VW+ M+A  + PG   F ++++    +  L  AC+YF+EM+  G+   
Sbjct: 437 FCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPP 496

Query: 487 APQYGTLKALL-------NSLLRAQKVE 507
           A  +  LK  L         +L AQK++
Sbjct: 497 AALFSHLKQALIEDGRKDTVVLLAQKID 524



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 167/378 (44%), Gaps = 1/378 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L+D+L K         L ++M+ +   +   F  +   + + GK+ EA     +M+ 
Sbjct: 150 YNALIDSLGKIKQFNMIWNLVNDMKRKGVLTKETFALISRRYARSGKVKEAMNTFEKMEK 209

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G + +   +N LL    +  ++  A  +  +M+ +   P+  SYT+L++   + + + +
Sbjct: 210 FGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLK 269

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
            +  + EM+  G E DVVTY  LI+ +CK RK D   E+   M  +   P+   +  ++ 
Sbjct: 270 LDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLIN 329

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
                  L E +E     +  G  P+   YN V+   C    + +A  + +EM  + + P
Sbjct: 330 GLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGP 389

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + ++ +++H  +      EA   F++M        P   T   ++       KVE A  
Sbjct: 390 NSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECE-PTVSTYDIIVRMFCNMDKVESAIK 448

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           VW  +  KG    ++ ++I I+SL     +  AC Y  +M+D  + P    F+ L + L 
Sbjct: 449 VWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALI 508

Query: 572 KLYNRQIAAEITEKVRKM 589
           +   +     + +K+ K+
Sbjct: 509 EDGRKDTVVLLAQKIDKL 526


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 133/413 (32%), Positives = 235/413 (56%), Gaps = 4/413 (0%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALI 145
           S +  L+ AL  SGV +   + E V+ +  +AG + YR++ WA KQ +Y HS   +  +I
Sbjct: 4   SSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVI 63

Query: 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
            SL+K+R++  +W +++ M+ ++  ++  E F I+MR++A A+ V++A+   + M KY  
Sbjct: 64  DSLAKIRQYQLMWDVVKVMKSKR--MVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDV 121

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
            P+   F  LL ALCK+ +V++A ++FD +++RF P  + ++ LL GW K+  L +A+ +
Sbjct: 122 PPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREI 181

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
             +M   G  PDIV Y  ++    + G++ +A  ++ EM    C P    Y+VL+     
Sbjct: 182 FREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGI 241

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
             ++E+A   F+EME +G E DV  Y  LI  FCK+ ++   Y +L+ M  +G+ PN  T
Sbjct: 242 ENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRT 301

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           +  I+ +   + E +E   +   M K+ C PD   Y ++I++ C+  ELK+A+ VW  M+
Sbjct: 302 FNIILSSLIGRGETDEAYRVFLRMIKV-CEPDADTYTMMIKMFCERDELKKALKVWKYMK 360

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
                P   +F V+++G   +G + +AC   +EM+ +G+  S   +G L+ LL
Sbjct: 361 LKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLL 413



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 165/361 (45%), Gaps = 4/361 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  ++D+L K    +    +   M+ +   ++  F  ++  + +  K+ EA Y    M  
Sbjct: 59  FHTVIDSLAKIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDK 118

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
               P++  +N LLS   +   +  A E+   ++ +   P++ +Y++L++   +   + +
Sbjct: 119 YDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFV-PDSKTYSILLEGWGKDPNLPK 177

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   F EM  +GC  D+VTY  ++   CK+ ++D    I++ M      P    Y  ++ 
Sbjct: 178 AREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVH 237

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +  +  +E+ V    EM   G  PDV+ YN +I   CK   LK    V NEM+   ++P
Sbjct: 238 TYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTP 297

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + +F +++   +G+G   EA   F  M+    +  P   T   ++       +++ A  
Sbjct: 298 NSRTFNIILSSLIGRGETDEAYRVFLRMIK---VCEPDADTYTMMIKMFCERDELKKALK 354

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           VW  +  K    +++ + + I+ L   G V +AC    +M++  + P   TF +L + L 
Sbjct: 355 VWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLI 414

Query: 572 K 572
           K
Sbjct: 415 K 415



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 153/307 (49%), Gaps = 10/307 (3%)

Query: 133 NYVHSYDV------YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           N +  YDV      +  L+ +L K +       + + ++     +  ++ + IL+  +  
Sbjct: 114 NIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDR--FVPDSKTYSILLEGWGK 171

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRH 245
              + KA E+  EM   GC PD   +G ++D LCK   V EA  + +EM     KP+   
Sbjct: 172 DPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFI 231

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           ++ L++ +  E ++ +A    ++M++ G EPD+ VYN L+  + +  ++ + + +L EM 
Sbjct: 232 YSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMD 291

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KG  PN+ ++ +++ +L    + +EA R F+ M +  CE D  TYT +I  FC+  ++ 
Sbjct: 292 CKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKV-CEPDADTYTMMIKMFCERDELK 350

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +  ++   M  +  +P+  T+  ++    +K ++ +   L+ EM + G  P    +  + 
Sbjct: 351 KALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLR 410

Query: 426 RLACKLG 432
           +L  K G
Sbjct: 411 QLLIKEG 417


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 244/457 (53%), Gaps = 14/457 (3%)

Query: 57  CNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGD 116
           C  TTD    H   + D  K+ ++L   HS    +E  L  + V + P L   V+ +  +
Sbjct: 68  CTETTDATNHH--IAQDTGKLCKLLCT-HSN-SSIESLLNGASVDVSPTLVLEVLKKLSN 123

Query: 117 AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
           +G +   ++ WA KQ  + +S + Y ALI++L K+++F  +W L+ +MR +   L+T E 
Sbjct: 124 SGVIALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKG--LLTQET 181

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F ++ RR+A AR VK+A+E  ++M K+G +P    F  LLDALCK+  V+ A ++FD+M+
Sbjct: 182 FALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMK 241

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +R F+P ++ +T LL GW +E  L+    V  +MKD GFEPD V Y  L++ + +  +  
Sbjct: 242 DRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYD 301

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A EL  +M    C P  + Y  LI  L    ++ EA + F   + SG   +  TY  ++
Sbjct: 302 AAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVV 361

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKI 412
             +C+S ++D  Y I+D M + G+ P   TY   LH ++   + +E     + M    + 
Sbjct: 362 GSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSS--EP 419

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           GC P VS Y +V+R+ C    +  A+ VW+EM+A  + PG   F  +++    +  L EA
Sbjct: 420 GCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEA 479

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           C+YF EM+  G+   P       L  +LL   K +M 
Sbjct: 480 CKYFHEMLDMGI--RPPAAMFSNLKQTLLDEGKQDMV 514



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 170/384 (44%), Gaps = 1/384 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L++AL K    K    L ++MR +   +   F  +   + +  K+ EA     +M+ 
Sbjct: 148 YNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVETFEKMEK 207

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G +P +  +N LL    +   +  A E+  +M+ +   P+  SYT+L++   + + +  
Sbjct: 208 FGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLR 267

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
            +  + EM+  G E D VTY  LI+  CK+R+ D   E+   M     +P    Y  ++ 
Sbjct: 268 LDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLIN 327

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               +  L E ++     +  G  P+   YN V+   C+   + +A  + +EM    + P
Sbjct: 328 GLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGP 387

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            T ++ +++H  +      EA   F+ M        P   T + ++      ++V+MA  
Sbjct: 388 QTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCE-PSVSTYEIVVRMFCNEERVDMALR 446

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           VW  +  KG    ++ ++  I+SL     + EAC Y  +M+D  + P    F+ L + L 
Sbjct: 447 VWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLL 506

Query: 572 KLYNRQIAAEITEKVRKMAAERQI 595
               + +   + +K+ K+   + I
Sbjct: 507 DEGKQDMVLILAQKLDKIRTTQVI 530


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 249/457 (54%), Gaps = 8/457 (1%)

Query: 58  NNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDA 117
            + T   G   + S + E++ R+L       P++  AL   G  + P L   V+    +A
Sbjct: 101 QDFTVVPGPGLDVSEEAERVCRVLSTLPE--PRVPAALDALGASVSPQLVAEVLKNLSNA 158

Query: 118 GNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF 177
           G L   ++ WA +Q  +V++ D +  LI++L K+++F  VW+L+E MR     L++ + F
Sbjct: 159 GILALAFFRWAERQQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRG--LLSKDTF 216

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
            +++RR+A AR VK+A+E  ++M  +G + D   +  L+D L K+  VK+A  +F EM+ 
Sbjct: 217 RLIVRRYARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKR 276

Query: 238 --RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
             RF P L+ +T L+ GW  E  L+  K V  +M DAG +PD+V Y  L+S + + GK  
Sbjct: 277 NGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCD 336

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A ++ +EM   GC P+ + Y +LI  L   E+++EA + F   + SG   +V T   ++
Sbjct: 337 EAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVV 396

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
             +C+S K    ++++D M + GI PN  TY  I+    K +++EE   +   M K GC 
Sbjct: 397 GAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCE 456

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P ++ Y +++ + C    +  A+ VWN+M+   + P    F  +++G   +  L EAC Y
Sbjct: 457 PQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAY 516

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
           F+EM+ RG+   P       L  +L+   ++ +A+++
Sbjct: 517 FQEMLDRGI--RPPGQLFSNLKEALIEGGRISLAQEM 551



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 176/379 (46%), Gaps = 3/379 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  L++AL K    +    L + MR R   S   F  ++  + +  K+ EA     +M  
Sbjct: 182 FHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAVETFEKMAG 241

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKME 330
            G + D+  YN L+   ++  ++  A  + KEM+R G   P+  +YTVL++     + + 
Sbjct: 242 FGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLL 301

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
                + EM  +G + DVV Y  LIS FCKS K D   ++   M   G +P+   Y  ++
Sbjct: 302 MLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLI 361

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                +E L+E ++     +  G   +V   N V+   C+  + + A  + +EM  + + 
Sbjct: 362 NGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIG 421

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P + ++ +++H  +    + EA   F+ M   G    PQ  T   ++      ++V++A 
Sbjct: 422 PNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDG--CEPQLNTYTMMVGMFCSNERVDVAL 479

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            VW+ +  KG    ++ ++  I+ L     ++EAC+Y  +M+D  + P    F+ L   L
Sbjct: 480 KVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPPGQLFSNLKEAL 539

Query: 571 KKLYNRQIAAEITEKVRKM 589
            +     +A E+  K+ ++
Sbjct: 540 IEGGRISLAQEMALKLDEL 558


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 242/444 (54%), Gaps = 9/444 (2%)

Query: 52  EDDCKCNNTTDTHGSHNEFSH------DVEKIFRILKKFHSRLPKLELALQHSGVVLRPG 105
           +DDC  +N  ++  +  E  +      +V+++ +++ +  +    +E  L   G+ L   
Sbjct: 37  DDDCNEDNKCESGNNDGEKINSSADPVEVDRVCKVIDELFALDRNMEAVLDECGINLSHD 96

Query: 106 LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR 165
           L   V+ R   A    +R++ WA ++  + H    Y +++  L+K R+F  V +++EEM 
Sbjct: 97  LVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMG 156

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
            +   ++T + F I MR FA+A+  KKA+ + + M KY  +        LLD+L +    
Sbjct: 157 GKG--VLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLG 214

Query: 226 KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           KEA  LF+ ++ RF P+LR +T LL GWCK   L+EA  V  +M D GF+PDIV +N +L
Sbjct: 215 KEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIML 274

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  +  + +DA +L   M+ KG  P+  SYT+LI+ LCR  KMEEA   F EM  SGC+
Sbjct: 275 EGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCK 334

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            D   YT LI+GF   +++D  Y++L  M + G  P+ LTY  ++    + +  ++   +
Sbjct: 335 PDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARI 394

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             +M + G  P +  YN++++   +    +    VW+EM      P  +S+ V++ G + 
Sbjct: 395 YKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLIS 454

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQ 489
           QG   EAC+Y +EM+ +G + APQ
Sbjct: 455 QGRSGEACKYLEEMLEKG-MKAPQ 477



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 8/251 (3%)

Query: 140 VYRALIKSLSKMRKF---GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
            Y  L+    K++     G+VW  M + +  KP ++      I++     ++    AI++
Sbjct: 234 TYTVLLNGWCKVKNLMEAGSVWNEMID-KGFKPDIVAHN---IMLEGLLRSKQRSDAIKL 289

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCK 255
              M   G  PD   +  L+  LC+ S ++EA + F EM +   KP    +T L+ G+  
Sbjct: 290 FMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGN 349

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             ++     +L +MK+ G  PD + YN L+    ++    DA  + K+M + G +P  ++
Sbjct: 350 RKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHT 409

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++++  +    E     + EM R G   D  +YT LI G     +     + L+ M+
Sbjct: 410 YNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEML 469

Query: 376 QRGILPNQLTY 386
           ++G+   QL Y
Sbjct: 470 EKGMKAPQLDY 480



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 107/231 (46%), Gaps = 4/231 (1%)

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           E+ G E D  TY +++S   K+R+ +    +L+ M  +G+L    T+   M A    +E 
Sbjct: 121 EKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMD-TFSIAMRAFAAAKER 179

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           ++ V +   M+K      V   N ++    +    KEA  ++  ++    +P   ++ V+
Sbjct: 180 KKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKG-RFTPNLRTYTVL 238

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           ++G+     L+EA   + EM+ +G    P       +L  LLR+++   A  ++  +  K
Sbjct: 239 LNGWCKVKNLMEAGSVWNEMIDKGF--KPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAK 296

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           G   +V ++TI I  L     ++EA  Y  +M+D+   P    +  L+ G 
Sbjct: 297 GPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGF 347


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 255/452 (56%), Gaps = 18/452 (3%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           +E + D EK  +++ K  +    +E  L  + + L P L   V+ +  +AG L   ++ W
Sbjct: 88  DEIAQDAEKFCKLISKNPNSC--IESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRW 145

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A KQ  + H+ + Y  LI++L K+++F  +W L+ +M+++   +++ E F ++ RR+A A
Sbjct: 146 AEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKG--ILSRETFALITRRYARA 203

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHF 246
           R VK+A+E  ++M K+G +     F  LLD LCK+ +VK+A ++FD+M+  RFKP ++ +
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSY 263

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T LL GW ++  L++   V  +M+D GFEPD+V +  L++ + +  K  +A  L  EM  
Sbjct: 264 TILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEA 323

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K   P+ + +  LI  L   ++++EA   F +++ SG   +  TY  ++  +C S K+  
Sbjct: 324 KNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAY 383

Query: 367 CYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            Y ++D M + G+ PN  TY   LH ++   K +E     + M   R+ GC P +S Y++
Sbjct: 384 AYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMS--REPGCEPTLSTYDI 441

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +IR+ C    +  A+ +W+EM+A  + PG   F  +++    +  L +AC YF+EM+  G
Sbjct: 442 MIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVG 501

Query: 484 L-LSAPQYGTLK-ALLN------SLLRAQKVE 507
           +   A  +  LK ALL+      +LL A+K++
Sbjct: 502 IRPPATMFSNLKQALLDDGRKDTALLMAEKIK 533



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 174/378 (46%), Gaps = 1/378 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L++AL K         L  +M+ +   S   F  +   + +  K+ EA     +M+ 
Sbjct: 159 YNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEK 218

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            GF+  +  +N LL    +   +  A E+  +M+     P+  SYT+L++   + + + +
Sbjct: 219 FGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLK 278

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
            N  + EM   G E DVVT+  LI+  CK+RK D    +   M  + I P+   +  ++ 
Sbjct: 279 LNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLIN 338

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               ++ L+E +E   +++  G  P+   YN V+   C   ++  A  + +EM  + + P
Sbjct: 339 GLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + ++ +++H  +      EA   F+ M  R     P   T   ++      ++V+MA  
Sbjct: 399 NSRTYDIILHHLIKGRKSKEAYSVFQRM-SREPGCEPTLSTYDIMIRMFCNEERVDMAIQ 457

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           +W  +  KG    ++ ++  I+SL     +++AC+Y  +M+D  + P    F+ L + L 
Sbjct: 458 IWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALL 517

Query: 572 KLYNRQIAAEITEKVRKM 589
               +  A  + EK++K+
Sbjct: 518 DDGRKDTALLMAEKIKKL 535


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 254/451 (56%), Gaps = 18/451 (3%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           +E + D EK  +++ K  +    +E  L  + + L P L   V+ +  +AG L   ++ W
Sbjct: 88  DEIAQDAEKFCKLISKNPNSC--IESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRW 145

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A KQ  + H+ + Y  LI++L K+++F  +W L+ +M+++   +++ E F ++ RR+A A
Sbjct: 146 AEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKG--ILSRETFALITRRYARA 203

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHF 246
           R VK+A+E  ++M K+G +     F  LLD LCK+ +VK+A ++FD+M+  RFKP ++ +
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSY 263

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T LL GW ++  L++   V  +M+D GFEPD+V +  L++ + +  K  +A  L  EM  
Sbjct: 264 TILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEA 323

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K   P+ + +  LI  L   ++++EA   F +++ SG   +  TY  ++  +C S K+  
Sbjct: 324 KNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAY 383

Query: 367 CYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            Y ++D M + G+ PN  TY   LH ++   K +E     + M   R+ GC P +S Y++
Sbjct: 384 AYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMS--REPGCEPTLSTYDI 441

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +IR+ C    +  A+ +W+EM+A  + PG   F  +++    +  L +AC YF+EM+  G
Sbjct: 442 MIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVG 501

Query: 484 L-LSAPQYGTLK-ALLN------SLLRAQKV 506
           +   A  +  LK ALL+      +LL A+K+
Sbjct: 502 IRPPATMFSNLKQALLDDGRKDTALLMAEKI 532



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 173/378 (45%), Gaps = 1/378 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L++AL K         L  +M+ +   S   F  +   + +  K+ EA     +M+ 
Sbjct: 159 YNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEK 218

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            GF+  +  +N LL    +   +  A E+  +M+     P+  SYT+L++   + + + +
Sbjct: 219 FGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLK 278

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
            N  + EM   G E DVVT+  LI+  CK+RK D    +   M  + I P+   +  ++ 
Sbjct: 279 LNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLIN 338

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               ++ L+E +E   +++  G  P+   YN V+   C   ++  A  + +EM  + + P
Sbjct: 339 GLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + ++ +++H  +      EA   F+ M  R     P   T   ++      ++V+MA  
Sbjct: 399 NSRTYDIILHHLIKGRKSKEAYSVFQRM-SREPGCEPTLSTYDIMIRMFCNEERVDMAIQ 457

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           +W  +  KG    ++ ++  I+SL     +++AC+Y  +M+D  + P    F+ L + L 
Sbjct: 458 IWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALL 517

Query: 572 KLYNRQIAAEITEKVRKM 589
               +  A  + EK+ K+
Sbjct: 518 DDGRKDTALLMAEKIXKL 535


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 225/432 (52%), Gaps = 3/432 (0%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S  + +I RIL  F      LE  L      + PGL E+V+ RC + G   +R+++WA +
Sbjct: 47  SQYINEISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSAHRFFLWAKR 106

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            P + HS + Y  L+  L   ++F  +W  + +MR+ +   I  E+F ++ R +  A + 
Sbjct: 107 LPGFEHSKESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLP 166

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
             AI    +M  +G +        LL  LCK   VK+A + FD++     P+ + ++ L+
Sbjct: 167 GDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILM 226

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            GW   G   EA+ +  +M++ G   D+V YN+LL    + G + +A++L +EM   G  
Sbjct: 227 RGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLA 286

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+A SY++ I+A C +  +  A +    M R     +V TY  ++   CKS K+D  Y++
Sbjct: 287 PDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQL 346

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD MI+RG+ P+  +Y  I   H    E+ + + L+  M K  C+PD   YN+V+++  +
Sbjct: 347 LDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLR 406

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQ 489
           +G      +VW  ME     P   ++ VMVHGF   +G L EAC+YF+ M+  G+   P 
Sbjct: 407 VGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGI--PPY 464

Query: 490 YGTLKALLNSLL 501
             T++ L N ++
Sbjct: 465 SCTVELLRNRVI 476


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/417 (32%), Positives = 232/417 (55%), Gaps = 3/417 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           +V K+ +++ +  +    +E  L   G+ L   L   V+ R   A    +R++ WA+++P
Sbjct: 75  EVHKVCKVIDELFALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKP 134

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            +VH    Y +++  L+K R+F  + +++EEM +++  L+T + F I MR FA+A+  KK
Sbjct: 135 GFVHDSRTYHSMMIILAKARQFETMMSMLEEMGEKR--LLTLDTFSIAMRAFAAAKERKK 192

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ + + M  +           LLD+L +    KEA  LF ++  RF P+LR +T LL G
Sbjct: 193 AVGIFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYTVLLNG 252

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+   L+EA  +  +M D GF+PDIV +N +L G  +  K +DA +  + M+ KG  P+
Sbjct: 253 WCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPD 312

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             SYT+LI+ LC+  KM+EA   F EM  SGC  D   YT L++G+   +++D  YE+L 
Sbjct: 313 VRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLK 372

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++G  P+  TY  ++     +   ++ V +  +M + G  P + +YN++++   ++ 
Sbjct: 373 EMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIR 432

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
             +    VW+EM      P  +S+ V + G + QG   EAC+Y +EM+ +G + APQ
Sbjct: 433 NYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKG-MKAPQ 488



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 9/235 (3%)

Query: 155 GAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212
           G +W    EM  E  KP ++T     I++     ++    AI+  + M   G  PD   +
Sbjct: 263 GRIW---NEMLDEGFKPDIVTHN---IMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSY 316

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
             L+  LCK + +KEA   F EM +    P    +T L+ G+    ++     +L +MK+
Sbjct: 317 TILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKE 376

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  PD   YN L+          DA  + K+M + G +P+ +SY +++++  R+   E 
Sbjct: 377 KGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEM 436

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            +  + EM + G   D  +YT  I G     + +   + L+ MI++G+   QL Y
Sbjct: 437 GHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDY 491



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 2/236 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +  +++ L + +K        E M+ + P       + IL+R       +K+A+    E
Sbjct: 280 THNIMLEGLLRSKKRSDAIKFFEVMKAKGPS-PDVRSYTILIRDLCKQTKMKEAVGYFYE 338

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M   GC PD  V+ CL+     +  +    +L  EM+E+   P  + + +L+     +  
Sbjct: 339 MVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRM 398

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +A  +  +M   G EP I  YN ++  Y ++        +  EM +KG  P+ NSYTV
Sbjct: 399 PDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTV 458

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            I  L    + EEA +   EM   G +A  + Y    + F ++ K D   E+   M
Sbjct: 459 FIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAQKM 514



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 6/257 (2%)

Query: 315 SYTVLIQALCRMEKMEEANRAFV--EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           S+ ++I+ L R     +    F     E+ G   D  TY +++    K+R+ +    +L+
Sbjct: 105 SHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVHDSRTYHSMMIILAKARQFETMMSMLE 164

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++ +L    T+   M A    +E ++ V +   M+       V   N ++    +  
Sbjct: 165 EMGEKRLLTLD-TFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAK 223

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
             KEA  ++ ++E    +P   ++ V+++G+     L+EA   + EM+  G    P   T
Sbjct: 224 LGKEAQALFGKLEG-RFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGF--KPDIVT 280

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              +L  LLR++K   A   +  +  KG   +V ++TI I  L     +KEA  Y  +M+
Sbjct: 281 HNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMV 340

Query: 553 DADVMPQPDTFAKLMRG 569
           D+   P    +  LM G
Sbjct: 341 DSGCHPDAAVYTCLMTG 357


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 274/511 (53%), Gaps = 21/511 (4%)

Query: 9   LSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHN 68
           ++L    RRF      + +TSH ES      Q  S     ++ +      +T+  H  +N
Sbjct: 1   MTLSRSFRRFPNLFPLSKSTSHFESPTVQFIQNPS-----RSLKFHIFPFHTSLLHKPNN 55

Query: 69  EFSHDVEKIFRILKKFHSRLPK--LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYM 126
             +   E I RIL    S  P+  ++++L++  V + P L   V+N+  +AG L   ++ 
Sbjct: 56  PHA---ETICRIL----STTPESPVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFR 108

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           WA KQ  + H+ +++ ALI++L K+R+F  +W L++EM++ K  L+  + F ++ RR+  
Sbjct: 109 WAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRK--LLNGDTFSLIARRYVR 166

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKLFDEMRE-RFKPSLR 244
           A+++K+A++  + M KYG +P    F  L+D LCK+   V++A +LFD+MR+   +P+L+
Sbjct: 167 AKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLK 226

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +T L+ GW ++  L++   V  +MKD GF+PD+V Y  +++ Y +  K  +A  +  +M
Sbjct: 227 SYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDM 286

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             K  +P+ + Y   I  L    +M+EA   F + + SG   +  TY  ++S +C S +I
Sbjct: 287 LSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRI 346

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM-RKIGCVPDVSNYNV 423
           D  Y I+  M + GI PN  TY  I++   K    +E   +   M  + GC P VS Y +
Sbjct: 347 DDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAI 406

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++R+ C   +L  A+ VWNEM+   + PG   F  ++     +  L +AC YF++M+  G
Sbjct: 407 MVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVG 466

Query: 484 L-LSAPQYGTLK-ALLNSLLRAQKVEMAKDV 512
           +  +A  +   K AL+ + +    +  AK V
Sbjct: 467 IRPTANMFSAFKRALMAAGMENTVIHFAKKV 497



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 187/423 (44%), Gaps = 5/423 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P  ++ E+ V ++ + ++A ++  +     E  + G   +  +F  L++AL K    K  
Sbjct: 81  PVEVSPELVVAVLNKLSNAGILALSFFRWAEK-QQGFNHNTEIFHALIEALGKIRQFKMI 139

Query: 229 AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
             L DEM++R   +   F+ +   + +   + EA     +M+  G +P I  +N L+   
Sbjct: 140 WNLVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVL 199

Query: 289 AQMG-KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
            +    +  A EL  +MR+   +PN  SYT+LI+   + + + + +    EM+  G + D
Sbjct: 200 CKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPD 259

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           VVTY  +I+ +CK++K D    I   M+ + + P+   Y   +        ++E  E   
Sbjct: 260 VVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFE 319

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF-VVMVHGFLGQ 466
           + +  G  P+   YN V+   C    + +A  +  EM+   + P   ++ +++VH   G 
Sbjct: 320 KSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKG- 378

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G   EA   F+ M        P   T   ++       +++MA  VW+ +  KG    ++
Sbjct: 379 GRTKEAYSVFQRMSSETGCE-PSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIH 437

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            ++  I SL     + +AC Y   M+D  + P  + F+   R L             +KV
Sbjct: 438 MFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKV 497

Query: 587 RKM 589
            K+
Sbjct: 498 DKL 500



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 121/321 (37%), Gaps = 51/321 (15%)

Query: 7   KALSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGS 66
           KA  L  K R+++  P   + T  +E  +   N L  + VC + K+D  + +  T     
Sbjct: 208 KAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVT----- 262

Query: 67  HNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYM 126
                      + I+   + +  K + A+   G+                       Y+ 
Sbjct: 263 -----------YGIIINAYCKAKKYDEAI---GI-----------------------YHD 285

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRF 184
             SK  N   S  +Y   I  L    +    +   E+ +     P+  T    V     +
Sbjct: 286 MLSKNVN--PSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVV---SAY 340

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPS 242
             +  +  A  ++ EM + G  P+   +  +L  L K    KEA  +F  M      +PS
Sbjct: 341 CWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPS 400

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +  ++  +C E +L  A  V  +MKD G  P I +++ L+       K+ DA    +
Sbjct: 401 VSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQ 460

Query: 303 EMRRKGCDPNANSYTVLIQAL 323
           +M   G  P AN ++   +AL
Sbjct: 461 QMLDVGIRPTANMFSAFKRAL 481


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/408 (33%), Positives = 225/408 (55%), Gaps = 4/408 (0%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           L+ AL  +GV + P L E V+ R  +AG   +R++ WA KQ  Y HS   Y  +I+SL+K
Sbjct: 31  LDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLAK 90

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           +R++  VW L+  MRK+   ++  E F I+MR++A A  V +A+   + M KY   P+  
Sbjct: 91  IRQYQIVWDLVSAMRKKG--MLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLA 148

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            F  LL ALCK+++V++A ++FD M+ +F P  + ++ LL GW K   L  A+ V  +M 
Sbjct: 149 AFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMV 208

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           +AG +PD+V Y  ++    + G++ +A E++KEM    C P +  Y+VL+       ++E
Sbjct: 209 EAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIE 268

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A   F+EM + G +ADVV Y  LI  FCK  K    + +L  M   G+ PN  T   I+
Sbjct: 269 DAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVII 328

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
            +   + + +    +   M K+ C PD   Y ++I++ C+  EL+ A+ +W  M++    
Sbjct: 329 SSMIGQGQTDRAFRVFCRMIKL-CEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFV 387

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
           P   +F  ++ G   +    +AC   +EM+ +G+  S   +G L+ LL
Sbjct: 388 PSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLL 435



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 170/378 (44%), Gaps = 4/378 (1%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++++L K    +    L   MR++   ++  F  ++  + +  K+ EA Y    M     
Sbjct: 84  MIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDV 143

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            P++  +N LLS   +   +  A E+   M+ +   P+  SY++L++   +   +  A  
Sbjct: 144 VPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFV-PDEKSYSILLEGWGKAPNLPRARE 202

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F EM  +GC+ DVVTY  ++   CK+ ++D   E++  M      P    Y  ++  + 
Sbjct: 203 VFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYG 262

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
            +  +E+ ++   EM K G   DV  YN +I   CK+ + K    V  EME+  ++P + 
Sbjct: 263 VEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSR 322

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           +  V++   +GQG    A   F  M+    L  P   T   ++       ++EMA  +W 
Sbjct: 323 TCNVIISSMIGQGQTDRAFRVFCRMIK---LCEPDADTYTMMIKMFCEKNELEMALKIWK 379

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            + +K    +++ ++  I  L    +  +AC    +M++  + P   TF +L + L K  
Sbjct: 380 YMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLLIKEG 439

Query: 575 NRQIAAEITEKVRKMAAE 592
              +   + EK+  +  E
Sbjct: 440 REDVLKFLHEKMNLLVKE 457



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 62/146 (42%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+  F      K    VL EM   G  P+      ++ ++        A ++F  M +  
Sbjct: 292 LIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLC 351

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           +P    +T ++  +C++ +L  A  +   MK   F P +  ++ L+ G  +      A  
Sbjct: 352 EPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACV 411

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCR 325
           +++EM  KG  P+  ++  L Q L +
Sbjct: 412 VMEEMIEKGIRPSRITFGRLRQLLIK 437


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/417 (32%), Positives = 228/417 (54%), Gaps = 3/417 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           +VE++ +++ +  +    +E+ L   GV L   L   V+ R   A    +R++ WA K+P
Sbjct: 173 EVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRP 232

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            + H    Y  ++  L + R+F  + A++EEM ++   L+T E F I ++ FA A+  KK
Sbjct: 233 GFAHDSRTYNFMMCVLGRTRQFETMVAMLEEMGEKG--LLTMETFSIAIKAFAEAKQRKK 290

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ + D M KYG +    V   LLD+L      KEA  +F+++++RF PSL+ +T LL G
Sbjct: 291 AVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSG 350

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+   L+EA  V  +M D GF PD+V +N +L G  +  K +DA +L + M+ KG  PN
Sbjct: 351 WCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPN 410

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             SYT++IQ  C+ + M EA   F  M   GC+ D   YT LI+GF + +K+D  Y +L 
Sbjct: 411 VRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLK 470

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M +RG  P+  TY  ++     +   ++ V +  +M + G  P +  YN++++      
Sbjct: 471 EMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTK 530

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
             +    +W+EM      P  +S++V + G + Q    EAC+Y +EM+ +G + AP+
Sbjct: 531 NYEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKG-MKAPK 586



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 154/319 (48%), Gaps = 11/319 (3%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           DV   L+ SLS  +      A+ E+++    P L   + + IL+  +   + + +A  V 
Sbjct: 308 DVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSL---QTYTILLSGWCRLKNLLEAGRVW 364

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
           +EM   G  PD      +L+ L K     +A KLF+ M+ +   P++R +T ++  +CK+
Sbjct: 365 NEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQ 424

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + EA      M D G +PD  +Y  L++G+ +  KM   + LLKEMR +GC P+  +Y
Sbjct: 425 KLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTY 484

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI+ +      ++A R + +M +SG +  + TY  ++  +  ++  +  +EI D M Q
Sbjct: 485 NALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQ 544

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG---- 432
           +G  P+  +Y+  +    +++   E  + + EM + G      +YN       K G    
Sbjct: 545 KGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDISKTGNAVI 604

Query: 433 --ELKEAVNVWNEMEAASL 449
             EL   +N   + E +++
Sbjct: 605 LEELARKMNFVGKFEVSNV 623



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 113/256 (44%), Gaps = 12/256 (4%)

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +R G   D  TY  ++    ++R+ +    +L+ M ++G+L  +   + I    E K+  
Sbjct: 230 KRPGFAHDSRTYNFMMCVLGRTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQR- 288

Query: 400 EECVELMGEMRKIG--CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           ++ V +   M+K G     DV N+ +      KLG  KEA  V+ +++    +P   ++ 
Sbjct: 289 KKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLG--KEAQAVFEKLKD-RFTPSLQTYT 345

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +++ G+     L+EA   + EM+ RG    P       +L  LL+ +K   A  ++  + 
Sbjct: 346 ILLSGWCRLKNLLEAGRVWNEMIDRGF--NPDVVAHNVMLEGLLKCKKKSDAIKLFEIMK 403

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
            KG   NV ++TI I        + EA  Y   M+D    P    +  L+ G    + RQ
Sbjct: 404 AKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITG----FGRQ 459

Query: 578 IAAEITEKVRKMAAER 593
              ++   + K   ER
Sbjct: 460 KKMDMVYSLLKEMRER 475


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 247/454 (54%), Gaps = 8/454 (1%)

Query: 61  TDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNL 120
           TD  G  ++ S   E++ R++       P++  AL   GV + P L   V+    +AG L
Sbjct: 86  TDGDGPGSDVSEVAERVCRVVSSQPE--PRIASALDALGVNMSPELVAEVLRNLSNAGIL 143

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
              ++ WA +Q  + ++ + +  LI++L K+++F  VW+L+E MR     L++ + F ++
Sbjct: 144 ALAFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRG--LLSKDTFRLI 201

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--R 238
           +RR+A AR VK+A+E  ++M  +G + D   +  L+D L K+  VK+A  +F EM+   R
Sbjct: 202 VRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGR 261

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P L+ +T L+ GW  E  L+  K V  +M DAG +PD+V Y  L+S + + GK  +A 
Sbjct: 262 FVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAI 321

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           ++ +EM   GC P+ + Y +LI  L   E+++EA + F   + SG   +V T   ++  +
Sbjct: 322 KVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAY 381

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+S K    ++++D M + GI PN  TY  I+    K +++EE   +   M   GC P +
Sbjct: 382 CRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQL 441

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
           + Y +++ + C    +  A+ VW +M+   + P    F  +++G   +  L EAC YF+E
Sbjct: 442 NTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQE 501

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
           M+ +G+   P       L  +L+   ++ +A+D+
Sbjct: 502 MLDKGI--RPPGQLFSNLKEALIEGGRISLAQDM 533



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 163/360 (45%), Gaps = 3/360 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  L++AL K    +    L + MR R   S   F  ++  + +  K+ EA     +M  
Sbjct: 164 FHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAVETFEKMSS 223

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKME 330
            G + D+  YN L+   ++  ++  A  + KEM+R G   P+  +YTVL++     + + 
Sbjct: 224 FGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLL 283

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
                + EM  +G + DVV Y TLIS FCKS K D   ++   M   G +P+   Y  ++
Sbjct: 284 MLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLI 343

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                +E L+E ++     +  G   +V   N V+   C+  + + A  + +EM    + 
Sbjct: 344 NGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIG 403

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++ +++   +    + EA   F+ M   G    PQ  T   ++      ++V+MA 
Sbjct: 404 PNARTYDIILQYLIKSQKIEEAYNVFQRMGMEG--CEPQLNTYTMMVGMFCSNERVDMAL 461

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            VW  +  KG    ++ ++  I+ L     ++EAC Y  +M+D  + P    F+ L   L
Sbjct: 462 KVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEAL 521


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 234/431 (54%), Gaps = 11/431 (2%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP--NYVHSYDVYRALIKSL 148
           LEL L HS + + P + ERV+ R  +AG L YR++ WA KQ      H+   Y  ++ SL
Sbjct: 54  LELELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQKRGGCNHTIRSYHTVVASL 113

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
           +K+R++  +W ++  MR+E   ++  E F I+MR++A A+   +A+   + M KYG  P+
Sbjct: 114 AKIRQYQLMWDVVAIMRREG--VVNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPN 171

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
              F  LL ALCK+ +V++A ++FD+M  RF P  + ++ LL GW K   L + + V  +
Sbjct: 172 LAAFNSLLGALCKSKNVRKAQEIFDKMNGRFNPDAKTYSILLEGWGKAPNLPKMREVYSE 231

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M DAG +PDIV Y  ++    + G++ +A  ++++M  +GC P    Y+VL+       +
Sbjct: 232 MLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMR 291

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +E+A   F++ME+ G   DVV Y  L++ FCK +K +  + ++D M   GI PN  T+  
Sbjct: 292 IEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNI 351

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           I+       + +E   +   M K  C PD   Y ++I++ C+   ++ A+ VW  M    
Sbjct: 352 ILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQ 410

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   +F V+++G   +G + +AC   ++M+ +G+   P   T   L   LL+    E 
Sbjct: 411 FLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGI--RPPGSTFGKLRQLLLK----EG 464

Query: 509 AKDVWSCIVTK 519
            KDV   +V K
Sbjct: 465 RKDVLEFLVDK 475



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 171/358 (47%), Gaps = 4/358 (1%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           MR     ++  F  ++  + +  K  EA Y    M+  G  P++  +N+LL    +   +
Sbjct: 129 MRREGVVNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNV 188

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A E+  +M  +  +P+A +Y++L++   +   + +    + EM  +GC+ D+VTY  +
Sbjct: 189 RKAQEIFDKMNGR-FNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIM 247

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           +   CK+ +++    ++  M  RG  P    Y  ++  +  +  +E+ V    +M K G 
Sbjct: 248 VDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGI 307

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           VPDV  YN ++   CK+ + + A  V ++ME   ++P + ++ ++++  +  G   EA  
Sbjct: 308 VPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYR 367

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F+ M+ R     P   T   ++        VEMA  VW  +  K    +++ +++ I+ 
Sbjct: 368 VFRRMIKR---CQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLING 424

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
           L   G V +AC    DM++  + P   TF KL + L K   + +   + +K++ +  E
Sbjct: 425 LCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMKILIQE 482


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 237/432 (54%), Gaps = 13/432 (3%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP--NYVHSYDVYRALIKSL 148
           +E  L HSGV + P + ERV+ R  +AG L YR++ WA +Q      H+   Y  ++ SL
Sbjct: 52  VEHELDHSGVRVTPDVAERVLERLDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASL 111

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
           +K+R++  +W ++  MR+E    +  E F I+MR++A A+ V +A+   + M KYG  P+
Sbjct: 112 AKIRQYQLMWDVVAVMRREGA--VNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPN 169

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
              F  LL ALCK+ +V++A ++FD+M  RF P  + ++ LL GW +   L + + V  +
Sbjct: 170 LAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILLEGWGRAPNLPKMREVYSE 229

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M DAG EPDIV Y  ++    + G++ +A  ++++M  +GC P    Y+VL+       +
Sbjct: 230 MLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMR 289

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +E+A   F++ME+ G   D+V Y  L+S FCK++K +  + +L+ M   GI  N  T+ +
Sbjct: 290 IEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTW-N 348

Query: 389 IMLAHEKK-EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
           I+L H       +E  ++   M K  C PD   Y ++I++ C+  +++ A+ VW  M   
Sbjct: 349 IILNHLISLGRDDEAYKVFRRMIKC-CQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLK 407

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   +F V+++G   +  + +AC   ++M+ +G+   P   T   L   LL+    E
Sbjct: 408 QFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGI--RPPGSTFGKLRQLLLK----E 461

Query: 508 MAKDVWSCIVTK 519
             KDV   +V K
Sbjct: 462 GRKDVLDFLVEK 473



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 171/360 (47%), Gaps = 8/360 (2%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           MR     ++  F  ++  + +  K+ EA Y    M+  G  P++  +N+LL    +   +
Sbjct: 127 MRREGAVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNV 186

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A E+  +M  +   P+A +Y++L++   R   + +    + EM  +GCE D+VTY  +
Sbjct: 187 RKAQEIFDKMNSR-FSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIM 245

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE--LEECVELMGEMRKI 412
           +   CK+ +++    ++  M  RG  P   TY++ +L H    E  +E+ V    +M K 
Sbjct: 246 VDSLCKTGRVEEAVRVVQDMTSRGCQPT--TYIYSVLVHTYGVEMRIEDAVATFLDMEKD 303

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G VPD+  YN ++   CK  + + A  V N+ME   ++  + ++ ++++  +  G   EA
Sbjct: 304 GIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEA 363

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            + F+ M+       P   T   ++       KVEMA  VW  +  K    +++ +++ I
Sbjct: 364 YKVFRRMIK---CCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLI 420

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
           + L     V +AC    DM++  + P   TF KL + L K   + +   + EK+  +  E
Sbjct: 421 NGLCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMNILIQE 480


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/419 (31%), Positives = 228/419 (54%), Gaps = 3/419 (0%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S +V ++ +++ +  +    +E  L   GV L   L   V+ R   A    +R++ WA++
Sbjct: 142 STEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQ 201

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +P + H    Y  ++  L K R+F  + +L+EEM ++  +L+T E F +  + FA+A+  
Sbjct: 202 KPGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEK--ELLTMETFTVCFKAFAAAKER 259

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
           KKA+ VL+ M KY  +       CLLD+L +    KEA  +F+++  RF P+L+ +T LL
Sbjct: 260 KKAVGVLELMKKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLL 319

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            GWC+   L+EA  +  QM D  F+PDIV +N +L G  +  K +DA +L + M+ KG  
Sbjct: 320 NGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPS 379

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  SYT+L++  C+  KM+EA + F EM+ +GC  D   YT LI+GF   +++D  Y +
Sbjct: 380 PDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGL 439

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M   G  P+  TY  ++     K   ++ V +  +M + G  P    Y+++++   +
Sbjct: 440 LKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQ 499

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
               +  V  W+EM+     P  +S+ V + G +  G   EA +Y +EM+ +G + APQ
Sbjct: 500 TRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKG-MKAPQ 557



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 173/389 (44%), Gaps = 9/389 (2%)

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
           K G   D   +  ++  L K    +    L +EM E+   ++  FT     +    +  +
Sbjct: 202 KPGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKK 261

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLS--GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           A  VL  MK   ++  +   N LL   G A++GK  +A  + +++  +   PN  +YTVL
Sbjct: 262 AVGVLELMKKYKYKVGVETINCLLDSLGRAKLGK--EALTIFEKLHGR-FTPNLQTYTVL 318

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +   CR+  + EA + + +M     + D+V + T++ G  + +K     ++ + M  +G 
Sbjct: 319 LNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGP 378

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+  +Y  ++    K+ +++E V+   EM+  GC PD + Y  +I        +     
Sbjct: 379 SPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYG 438

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  EM+A    P   ++  ++     +    +A   +K+M+  G+   P   T   ++ S
Sbjct: 439 LLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGI--KPTTHTYSMMMKS 496

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MP 558
             + +  EM    W  +  KGC  +  ++T++I  L S G   EA  Y  +M++  +  P
Sbjct: 497 YFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAP 556

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           Q D + K      +     I  E+ +K++
Sbjct: 557 QLD-YNKFAADFSRAGRPDILEELAQKMK 584



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 36/248 (14%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + + +L+  +   R + +A ++ ++M     +PD      +L+ L +     +A KLF+ 
Sbjct: 313 QTYTVLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEV 372

Query: 235 MRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M+ +   P ++ +T L+  +CK+ K+ EA     +M+ AG  PD  +Y  L++G+    +
Sbjct: 373 MKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKR 432

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR------------------- 334
           M   + LLKEM+  GC P+  +Y  LI+ +      ++A R                   
Sbjct: 433 MDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSM 492

Query: 335 ----------------AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
                           A+ EM+  GC  D  +YT  I G     +     + L+ MI++G
Sbjct: 493 MMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKG 552

Query: 379 ILPNQLTY 386
           +   QL Y
Sbjct: 553 MKAPQLDY 560



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 6/239 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +  +++ L + +K      L E M+ + P     + + IL+R F     +K+A++  +E
Sbjct: 349 AHNTMLEGLLRCKKRSDAIKLFEVMKAKGPS-PDVKSYTILVRDFCKQAKMKEAVQYFEE 407

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   GC PD  ++ CL+        +     L  EM+     P  + + +L+     +  
Sbjct: 408 MQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRM 467

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +A  +  +M + G +P    Y+ ++  Y Q            EM+ KGC P+ NSYTV
Sbjct: 468 PDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTV 527

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            I  L  + +  EA +   EM   G +A  + Y    + F ++ + D    IL+ + Q+
Sbjct: 528 FIGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPD----ILEELAQK 582


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 234/432 (54%), Gaps = 12/432 (2%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ---PNYVHSYDVYRALIKS 147
           LE+ L HS + + P + ERV+ R  +AG L YR++ WA KQ       H+   +  ++ S
Sbjct: 52  LEIELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQRRGGGCAHTVRSFHTVVAS 111

Query: 148 LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
           L+K+R++  +W ++  MR++   ++  E F I+MR++A A+ V +A+   + M KYG  P
Sbjct: 112 LAKIRQYQLMWDVVAIMRRQG--VVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVP 169

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
           +   F  LL ALCK+ +V++A ++F++M  RF P  + ++ LL GW +   L + + V  
Sbjct: 170 NLAAFNSLLCALCKSKNVRKAQEIFEQMNGRFSPDAKTYSILLEGWGRAPNLPKMRKVYS 229

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
            M DAG +PDIV Y  ++    + G++ +A  ++++M  +GC P    Y+VL+       
Sbjct: 230 DMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEM 289

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           ++E+A   F++M++ G   DVV Y  L++ FCK +K D  + ++D M   GI PN  T+ 
Sbjct: 290 RIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWN 349

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            I+       + +E   +   M K  C PD   Y ++I++ C+   L+ A+ VW  M   
Sbjct: 350 IILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLK 408

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   +F V+++G   +G + +AC   ++M+ +G+   P   T   L   LL+    E
Sbjct: 409 QFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGI--RPPGSTFGKLRQLLLK----E 462

Query: 508 MAKDVWSCIVTK 519
             KDV   +V K
Sbjct: 463 GRKDVLEFLVDK 474



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 185/389 (47%), Gaps = 4/389 (1%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           GC      F  ++ +L K    +    +   MR +   ++  F  ++  + +  K+ EA 
Sbjct: 97  GCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGVVNVETFGIIMRKYARAQKVDEAV 156

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
           Y    M+  G  P++  +N+LL    +   +  A E+ ++M  +   P+A +Y++L++  
Sbjct: 157 YTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGR-FSPDAKTYSILLEGW 215

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            R   + +  + + +M  +GC+ D+VTY  ++   CK+ +++    ++  M  RG  P  
Sbjct: 216 GRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTT 275

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
             Y  ++  +  +  +E+ V    +M+K G VPDV  YN ++   CK+ +   A  V ++
Sbjct: 276 FIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDD 335

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           ME   ++P + ++ ++++  +  G   EA   F+ M+ R     P   T   ++      
Sbjct: 336 MEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR---CQPDSDTYTMMIKMFCEN 392

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            ++EMA  VW  +  K    +++ +++ I+ L   G V +AC    DM++  + P   TF
Sbjct: 393 DRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTF 452

Query: 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            KL + L K   + +   + +K++ +  E
Sbjct: 453 GKLRQLLLKEGRKDVLEFLVDKMKILIQE 481


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 246/447 (55%), Gaps = 14/447 (3%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELA--LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           S   E++ R++    S  P+  +A  L   GV + P L   V+    +AG L   ++ WA
Sbjct: 89  SEAAERVCRVV----SAQPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWA 144

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
            +Q  + +S + +  LI++L K+++F  VW+L+E MR      ++ + F I++RR+A AR
Sbjct: 145 ERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCR--SCLSKDTFKIIVRRYARAR 202

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHF 246
            VK+A+E  ++M  +G + D   +  L+D L K+  VK+A  +F EM+   RF P L+ +
Sbjct: 203 KVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTY 262

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T L+ GW  E  L+  K V  +M DAG +PD+V Y  L+S + + GK  +A ++  EM  
Sbjct: 263 TVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEE 322

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            GC P+ + Y +LI  L  ME+++EA + F   + SG   +V T   +I  +C++ +   
Sbjct: 323 SGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHH 382

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
            ++++D M + GI PN  TY  I+L H  K E++EE   L   M + GC P+++ Y +++
Sbjct: 383 AFKMVDEMRKSGIGPNTRTY-DIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMV 441

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            + C    +  A+ VW +M+   + P    F  +++G   +  L EAC YF+EM+ +G+ 
Sbjct: 442 GMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGI- 500

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDV 512
             P       L  +L+   ++ +A++V
Sbjct: 501 -RPPGQLFSNLKEALVEGGRITLAQEV 526



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 175/376 (46%), Gaps = 3/376 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  L++AL K    +    L + MR R   S   F  ++  + +  K+ EA     +M  
Sbjct: 157 FHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSS 216

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKME 330
            G + D+  YN L+   ++  ++  A  + KEM+RKG   P+  +YTVL++     + + 
Sbjct: 217 FGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLL 276

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
                + EM  +G + DVV Y  LIS FCKS K D   ++   M + G +P+   Y  ++
Sbjct: 277 MLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLI 336

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                 E L+E ++     ++ G   +V   N VI   C+  E   A  + +EM  + + 
Sbjct: 337 NGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIG 396

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P T ++ ++++  +    + EA   F+ M   G    P+  T   ++      ++V+MA 
Sbjct: 397 PNTRTYDIILNHLIKSEKIEEAYNLFQRMERDG--CEPELNTYTMMVGMFCSNERVDMAL 454

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            VW  +  KG    ++ ++  I+ L     ++EAC Y  +M+D  + P    F+ L   L
Sbjct: 455 KVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEAL 514

Query: 571 KKLYNRQIAAEITEKV 586
            +     +A E+T+++
Sbjct: 515 VEGGRITLAQEVTQRL 530


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 222/429 (51%), Gaps = 7/429 (1%)

Query: 64  HGSHNEFSHDV--EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLG 121
           H S +E S DV  +++ RILK        L  AL      +   +  RV+ +      + 
Sbjct: 71  HTSASEDSRDVCIDQVLRILKSSDGDT-DLGKALHRFAGEMDEDVVLRVLQKQRSNWQVA 129

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE-VFVIL 180
             ++ WA+  P Y H    Y  ++  L +M+K   +  L +E+ +E+  L+ T   F +L
Sbjct: 130 LLFFNWAAGLPAYAHGPRTYTEMLDILGRMKKVKLMTQLFDEIPEERRGLVVTNRTFAVL 189

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           + R+A A  V++AIE+  +   YG E D   F  LL +LC+   V+EA  LF + ++ F 
Sbjct: 190 LNRYAGAHKVQEAIEMFYKRKDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP 249

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P ++ +  +L GWC +G L +AK +  Q+  +  +PD+  Y   ++   + GK++ A +L
Sbjct: 250 PVIKSWNIILNGWCVKGSLPDAKRIWNQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKL 309

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
              M  KG +P+      +I  LC  +K+ EA   F EM   GC+ADV TY TLI  FCK
Sbjct: 310 FTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFREMTDRGCQADVATYNTLIKYFCK 369

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
            R+ ++ YE+LD M  +G  PN +TY +I+   EK +++   + L+  M K GC  D   
Sbjct: 370 IRRTEKVYELLDDMENKGCSPNNMTYSYILKTTEKPKDV---IHLLQRMEKSGCRLDSDT 426

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN+++ L   +        VW+EME     P   SF +MVHG   QG L +A +Y+  M 
Sbjct: 427 YNLILNLYVSMKYENGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGRLDQALQYYTTMK 486

Query: 481 GRGLLSAPQ 489
            RG+   P+
Sbjct: 487 SRGMTPEPR 495



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K KP L T   F+        A  +  A+++   M + G  PD  +  C++D LC    +
Sbjct: 282 KLKPDLFTYGTFI---NSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKI 338

Query: 226 KEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            EA  +F EM +R  +  +  + +L+  +CK  +  +   +L  M++ G  P+ + Y+ +
Sbjct: 339 PEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTYSYI 398

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           L       K  D   LL+ M + GC  ++++Y +++     M+      + + EMER+G 
Sbjct: 399 LK---TTEKPKDVIHLLQRMEKSGCRLDSDTYNLILNLYVSMKYENGVQQVWDEMERNGS 455

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
             D  ++T ++ G     ++D+  +   +M  RG+ P   T + +   H KK+
Sbjct: 456 GPDQRSFTIMVHGLHSQGRLDQALQYYTTMKSRGMTPEPRTRILVKAIHMKKD 508


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 229/423 (54%), Gaps = 8/423 (1%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKF 154
           L+ + + + P L   V+ R  +AG +   ++ WA KQ  + ++ + Y ALI++L K+++F
Sbjct: 114 LEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQKGFKYNTESYNALIEALGKIKQF 173

Query: 155 GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
             + +L+ EM+  K  L+  + F ++ RR A AR V++AIE  + M ++G + +   F  
Sbjct: 174 KLIRSLVNEMKSRK--LLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFNR 231

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LLD LCK+  V++A K+FD+M++R F P ++ +T LL GW KE  L+    V ++MK  G
Sbjct: 232 LLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDG 291

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           FEPD+V Y  L+S Y +  K   A EL  EM  K C P  + Y  LI  L   +++ EA 
Sbjct: 292 FEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEAL 351

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F   +  G   +  TY +L+  +C S +ID  ++++D M +    PN  TY  I+L H
Sbjct: 352 EFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTY-DIILHH 410

Query: 394 --EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
             + +   E          + GC P VS Y +++R+ C    +  A  VW++M+A  + P
Sbjct: 411 LIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLP 470

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLK-ALLNSLLRAQKVEMA 509
           G   +  ++     +  L EAC+YF+EM+  G+   A  +  LK ALL+     + + +A
Sbjct: 471 GMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLA 530

Query: 510 KDV 512
           + +
Sbjct: 531 RKI 533



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 189/418 (45%), Gaps = 2/418 (0%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           ++  + V +++R ++A ++  +     E  K G + +   +  L++AL K    K    L
Sbjct: 121 VSPSLVVEVLKRLSNAGVIALSFFTWAEKQK-GFKYNTESYNALIEALGKIKQFKLIRSL 179

Query: 232 FDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            +EM+ R   +   F  +     +  K+ EA     +M++ GF+ +   +N LL    + 
Sbjct: 180 VNEMKSRKLLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKS 239

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
             +  A ++  +M+++   P+  SYT+L++   +   +   +  ++EM+  G E DVVTY
Sbjct: 240 RHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTY 299

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             LIS +CK++K D   E+   M  +   P    Y  ++     ++ L E +E     + 
Sbjct: 300 GILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKS 359

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  P+   YN ++   C    + +A  V +EM   S  P + ++ +++H  +      E
Sbjct: 360 CGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNE 419

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   F++M        P   T + ++       +V++AK VW  +  KG    ++ ++  
Sbjct: 420 AYFRFQKMSNEPGCE-PTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDL 478

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           I SL     + EAC Y  +M+DA + P    F+ L + L        A  +  K+ K+
Sbjct: 479 ITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLARKINKL 536


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 245/447 (54%), Gaps = 14/447 (3%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELA--LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           S   E++ R++    S  P+  +A  L   GV + P L   V+    +AG L   ++ WA
Sbjct: 89  SEAAERVCRVV----SAQPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWA 144

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
            +Q  + +S + +  LI++L K+++F  VW+L+E MR      ++ + F I++RR+A AR
Sbjct: 145 ERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCR--SCLSKDTFKIIVRRYARAR 202

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHF 246
            VK+A+E  ++M  +G + D   +  L+D L K+  VK+A  +F EM+   RF P L+ +
Sbjct: 203 KVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTY 262

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T L+ GW  E  L+  K V  +M DAG +PD+V Y  L+S + + GK  +A ++  EM  
Sbjct: 263 TVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEE 322

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            GC P+ + Y +LI  L  ME+++EA + F   + SG   +V T   +I  +C++ +   
Sbjct: 323 SGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHH 382

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
            ++++D M + GI PN  TY  I+L H  K E++EE   L   M + GC P+++ Y +++
Sbjct: 383 AFKMVDEMRKSGIGPNTRTY-DIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMV 441

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            + C    +  A+ VW +M+   + P    F  +++G      L EAC YF+EM+ +G+ 
Sbjct: 442 GMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGI- 500

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDV 512
             P       L  +L+   ++ +A++V
Sbjct: 501 -RPPGQLFSNLKEALVEGGRITLAQEV 526



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 176/376 (46%), Gaps = 3/376 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  L++AL K    +    L + MR R   S   F  ++  + +  K+ EA     +M  
Sbjct: 157 FHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSS 216

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKME 330
            G + D+  YN L+   ++  ++  A  + KEM+RKG   P+  +YTVL++     + + 
Sbjct: 217 FGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLL 276

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
                + EM  +G + DVV Y  LIS FCKS K D   ++   M + G +P+   Y  ++
Sbjct: 277 MLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLI 336

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                 E L+E ++     ++ G   +V   N VI   C+  E   A  + +EM  + + 
Sbjct: 337 NGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIG 396

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P T ++ ++++  +    + EA   F+ M   G    P+  T   ++      ++V+MA 
Sbjct: 397 PNTRTYDIILNHLIKSEKIEEAYNLFQRMERDG--CEPELNTYTMMVGMFCSNERVDMAL 454

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            VW  +  KG    ++ ++  I+ L  +  ++EAC Y  +M+D  + P    F+ L   L
Sbjct: 455 KVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEAL 514

Query: 571 KKLYNRQIAAEITEKV 586
            +     +A E+T+++
Sbjct: 515 VEGGRITLAQEVTQRL 530


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/429 (29%), Positives = 227/429 (52%), Gaps = 3/429 (0%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V +I RIL    +    LEL+L      +   L E+V+ RC + G    R+++WA + P 
Sbjct: 44  VNEISRILSDHRNPHHDLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQRFFLWAKRIPG 103

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + HS + Y  L+  L   ++F  +W  + E+R+ +   I+ +VF ++ R ++ A +   A
Sbjct: 104 FDHSKESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANLPSDA 163

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I   D M ++G +P       LL  LCK    K A ++FD ++ +F+   + ++ L+ GW
Sbjct: 164 IRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKHQFQTRAKTYSILVRGW 223

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
              G+ V A  V  +M++     D++ YN+LL  + + GK+++A+++ +EM   G  P+A
Sbjct: 224 GDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDA 283

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++++ I+A C    +  A R   EM+R     +V TY  +I   CK  K++  Y++L+ 
Sbjct: 284 CTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNE 343

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           +I+R   P+  +Y  I+  H +  E+     L+  M K  C+PD  +YN++++L  ++G 
Sbjct: 344 IIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGR 403

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQYGT 492
              A+ VW  M      P   ++ VMVHG    +G L EAC+YF+ M+  G+   P   T
Sbjct: 404 FDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGI--PPYSST 461

Query: 493 LKALLNSLL 501
           ++ L N L+
Sbjct: 462 VEILRNRLI 470


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/431 (32%), Positives = 232/431 (53%), Gaps = 11/431 (2%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYV--HSYDVYRALIKSL 148
           LE  L HSGV + P + E V+    +AG L YR++ WA KQ   V  H+   Y  ++ SL
Sbjct: 57  LEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEWARKQKRGVCAHTVRSYHTVVTSL 116

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
           +K+R++  +W ++  MRKE   +   E F I+MR++A A+ + +A+   + M KYG   +
Sbjct: 117 AKIRQYQLMWDVVAIMRKEG--VANVETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHN 174

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
              F  LL ALCK+ +V++A ++FD+M  RF P  + ++ LL GW +   L + + V   
Sbjct: 175 LAAFNSLLSALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGWGRAPSLPKMREVYSD 234

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M  AG +PDIV Y  ++    + G++ +A  ++++M  +GC P    Y++L+       +
Sbjct: 235 MLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMR 294

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +E+A  AF++ME+ G   DVV Y  LI+ FCK +K +  + ++D M   GI PN  T+  
Sbjct: 295 IEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNI 354

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           I+       + +E   +   M K  C PD   Y ++I++ C+  +++ A+ VW  M    
Sbjct: 355 ILNTLISLGKDDEAYRVFRSMIK-RCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQ 413

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   +F V+++G   +G + +AC   ++M+ +G+   P   T   L   LL+    E 
Sbjct: 414 FLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGI--RPPGSTFGKLRQLLLK----EG 467

Query: 509 AKDVWSCIVTK 519
            KDV   +V K
Sbjct: 468 RKDVLDFLVEK 478



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 173/358 (48%), Gaps = 4/358 (1%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           MR+    ++  F  ++  + +  KL EA Y    M+  G   ++  +N+LLS   +   +
Sbjct: 132 MRKEGVANVETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLSALCKSKNV 191

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A E+  +M  +   P+A +Y++L++   R   + +    + +M  +GC+ D+VTY  +
Sbjct: 192 RKAQEIFDKMNNR-FSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIM 250

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           +   CK+ +++    ++  M  RG  P    Y  ++  +     +E+ V    +M K G 
Sbjct: 251 VDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGI 310

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PDV  YN +I   CK+ + + A  V ++M+   +SP + ++ ++++  +  G   EA  
Sbjct: 311 MPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYR 370

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F+ M+ R     P   T   ++       K+EMA  VW  +  K    +++ +++ I+ 
Sbjct: 371 VFRSMIKR---CKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLING 427

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
           L   G V +AC    DM++  + P   TF KL + L K   + +   + EK++ +A E
Sbjct: 428 LCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMKILAQE 485


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 220/429 (51%), Gaps = 3/429 (0%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V +I RIL    +    LE +L      +   L E+V+ RC + G   +R+++WA + P 
Sbjct: 48  VNEISRILSDQRNPHHDLETSLNAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPG 107

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + HS + Y  L+  L   R+F  +W  + EMR+     I  E+  ++ R ++ A +   A
Sbjct: 108 FEHSEESYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDA 167

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I   D M ++G  P       LL  LCK   VK A + FD ++ +F+   + ++ L+ GW
Sbjct: 168 IRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHKFEAKAKTYSILVRGW 227

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
              G+ VEA+ V  +M+  G   D++ YN+LL    + G + +A+++ +E+   G +P+A
Sbjct: 228 GDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDA 287

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            SY + I+A C    +         M+R     +V TY  +I   CK+ K++  Y++L  
Sbjct: 288 CSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHE 347

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M++RG+ P+  +Y  I+  H +  E+    +L+  M K  C+PD  +YN++++L  ++G 
Sbjct: 348 MMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGR 407

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQYGT 492
              A  +W  M      P   ++ VM+HG    +G L EAC YF+ M+  G+   P   T
Sbjct: 408 FDRATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGI--PPYAST 465

Query: 493 LKALLNSLL 501
           ++ L N L+
Sbjct: 466 IEMLRNRLI 474


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 231/431 (53%), Gaps = 11/431 (2%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP--NYVHSYDVYRALIKSL 148
           +E  L HSGV + P + ERV+ R  +AG L YR++ WA +Q      H+   Y  ++ SL
Sbjct: 55  VEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASL 114

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
           +K+R++  +W ++  MRKE   +   E F I+MR++A A+   +A+   + M +YG   +
Sbjct: 115 AKIRQYQLMWDVVAVMRKEG--VANVETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHN 172

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
              F  LL ALCK+ +V++A ++FD+M  RF P  + ++ LL GW +   L + + V   
Sbjct: 173 LAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGWGRAPNLPKMREVYSD 232

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M  AG +PDIV Y  ++    + G++ +A  ++++M  +GC P    Y+VL+       +
Sbjct: 233 MLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMR 292

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +E+A   F++ME+ G   DVV Y  L++ FCK +K D  + ++D M   GI PN  T+  
Sbjct: 293 IEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNI 352

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           I+       + +E   +   M K  C PD   Y ++I++ C+  +++ A+ VW  M    
Sbjct: 353 ILNTLISLGKDDEAYRVFRNMIK-RCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQ 411

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   +F V+++G   +G + +AC   ++M+ +G+   P   T   L   LL+    E 
Sbjct: 412 FLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGI--RPPGSTFGKLRQLLLK----EG 465

Query: 509 AKDVWSCIVTK 519
            KDV   +V K
Sbjct: 466 RKDVLDFLVEK 476



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 194/422 (45%), Gaps = 5/422 (1%)

Query: 172 ITTEVFVILMRRFASARMVK-KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           +T EV   ++ R  +A M+  +  E      + GC      +  ++ +L K    +    
Sbjct: 66  VTPEVAERVLERLDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWD 125

Query: 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           +   MR+    ++  F+ ++  + +  K  EA Y    M+  G   ++  +N+LL    +
Sbjct: 126 VVAVMRKEGVANVETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCK 185

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
              +  A E+  +M  +   P+A +Y++L++   R   + +    + +M  +GC+ D+VT
Sbjct: 186 SKNVRKAQEIFDKMNNR-FSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVT 244

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  ++   CK+ +++    ++  M  RG  P    Y  ++  +     +E+ V    +M 
Sbjct: 245 YGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDME 304

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           K G VPDV  YN ++   CK+ +   A  V ++ME   +SP + ++ ++++  +  G   
Sbjct: 305 KDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDD 364

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA   F+ M+ R     P   T   ++       K+EMA  VW  +  K    +++ +++
Sbjct: 365 EAYRVFRNMIKR---CKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSV 421

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            I+ L   G V +AC    DM++  + P   TF KL + L K   + +   + EK++ + 
Sbjct: 422 LINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMKMLI 481

Query: 591 AE 592
            E
Sbjct: 482 QE 483


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 220/429 (51%), Gaps = 3/429 (0%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V +I R+L         LEL+L      L   L E+V+ RC + G   +R+++WA   P 
Sbjct: 47  VNEISRLLSDHRYPHHDLELSLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAKSIPG 106

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + HS   +  L++ L   ++F  +W  + EMR+     I +E+F ++ R ++ A +   A
Sbjct: 107 FQHSVMSFHILVEILGSCKQFAILWDFLTEMRESHHYEINSEIFWLIFRAYSQANLPDGA 166

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I   + M ++G +P       LL  LCK   VK+A +LF + + RF  + + ++ L+ GW
Sbjct: 167 IRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAKTYSILISGW 226

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            + G   +A  +   M + G   D++ YNNLL    + G++ +A  +  +M  K  +P+A
Sbjct: 227 GEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDA 286

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y++ I + C  + ++ A R   +M R     +V TY  +I   CK+  ++  Y++LD 
Sbjct: 287 FTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDE 346

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           MI RG+ P+  +Y  I   H    E+   + LM  M K  C+PD   YN+V++L  ++G 
Sbjct: 347 MISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGR 406

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQYGT 492
             +   VW  M      P   ++ VM+HGF   +G L EAC+YF+ M+  G+   P   T
Sbjct: 407 FDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGI--PPYVTT 464

Query: 493 LKALLNSLL 501
           ++ L N LL
Sbjct: 465 VEMLRNRLL 473



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  +IK L K       + L++EM  R  KP    T  +  +         V +A+ ++
Sbjct: 323 TYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPD---TWSYNAIQAYHCDHCEVNRALRLM 379

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
             M K  C PD   +  +L  L +     +  ++++ M ++ F PS+  ++ +++G+CK+
Sbjct: 380 FRMEKDICLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKK 439

Query: 257 -GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            GKL EA      M D G  P +     L +    +G   D  E+L    R+ 
Sbjct: 440 KGKLEEACKYFEMMIDEGIPPYVTTVEMLRNRLLGLG-FIDHIEILAAKMRQS 491


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 223/412 (54%), Gaps = 2/412 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           +VE++ +++ +  +    +E  L    V L   L  +V+ R   A    +R++ WA+++ 
Sbjct: 139 EVERVCKVIDELFALDRNMEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFFCWAAEKQ 198

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            + H    Y +++  L+K R+F  + +++EEM  +   L+T E F I M+ FA+A+  KK
Sbjct: 199 GFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKG--LLTMETFTIAMKAFAAAKERKK 256

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ + + M KY  +       CLLD+L +    KEA  LFD+++ERF P++  +T LL G
Sbjct: 257 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNG 316

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+   L+EA  +   M D G +PDIV +N +L G  +  K +DA +L   M+ KG  PN
Sbjct: 317 WCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPN 376

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             SYT++I+  C+   ME A   F +M  SG + D   YT LI+GF   +K+D  YE+L 
Sbjct: 377 VRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLK 436

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++G  P+  TY  ++     ++  E    +  +M +    P +  +N++++      
Sbjct: 437 EMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMAR 496

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
             +    VW+EM    + P  +S+ V++ G +G+G   EAC Y +EM+ +G+
Sbjct: 497 NYEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGM 548



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 139/281 (49%), Gaps = 5/281 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           L+ SL + +       L +++++   P ++T   + +L+  +   R + +A  + ++M  
Sbjct: 279 LLDSLGRAKLGKEAQVLFDKLKERFTPNMMT---YTVLLNGWCRVRNLIEAARIWNDMID 335

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVE 261
            G +PD      +L+ L ++    +A KLF  M+ +   P++R +T ++  +CK+  +  
Sbjct: 336 QGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 395

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A      M D+G +PD  VY  L++G+    K+   +ELLKEM+ KG  P+  +Y  LI+
Sbjct: 396 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIK 455

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            +   +  E A R + +M ++  E  + T+  ++  +  +R  +    + D MI++GI P
Sbjct: 456 LMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGICP 515

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +  +Y  ++     + +  E    + EM   G    + +YN
Sbjct: 516 DDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYN 556



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 6/252 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +  +++ L + RK      L   M+ + P       + I++R F     ++ AIE  D+
Sbjct: 344 AHNVMLEGLLRSRKKSDAIKLFHVMKSKGP-CPNVRSYTIMIRDFCKQSSMETAIEYFDD 402

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G +PD  V+ CL+        +    +L  EM+E+   P  + + +L+     +  
Sbjct: 403 MVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 462

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +  +M     EP I  +N ++  Y           +  EM +KG  P+ NSYTV
Sbjct: 463 PEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGICPDDNSYTV 522

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI+ L    K  EA R   EM   G +  ++ Y    + F K  +     EI + + QR 
Sbjct: 523 LIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHKGGQP----EIFEELAQRA 578

Query: 379 ILPNQLTYLHIM 390
               +     I 
Sbjct: 579 KFSGKFAAAEIF 590


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  241 bits (615), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 233/437 (53%), Gaps = 5/437 (1%)

Query: 51  KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
           +E + +C+N  +T  S  E S    +VE++ +++ +  +    +E  L    + L   L 
Sbjct: 105 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 164

Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
             V+ R   A    +R++ WA+++  + H    Y +++  L+K R+F  + +++EEM  +
Sbjct: 165 VEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK 224

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
              L+T E F I M+ FA+A+  KKA+ + + M KY  +       CLLD+L +    KE
Sbjct: 225 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282

Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
           A  LFD+++ERF P++  +T LL GWC+   L+EA  +   M D G +PDIV +N +L G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEG 342

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             +  K +DA +L   M+ KG  PN  SYT++I+  C+   ME A   F +M  SG + D
Sbjct: 343 LLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
              YT LI+GF   +K+D  YE+L  M ++G  P+  TY  ++     ++  E    +  
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYN 462

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M +    P +  +N++++        +    VW EM    + P  +S+ V++ G +G+G
Sbjct: 463 KMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEG 522

Query: 468 CLIEACEYFKEMVGRGL 484
              EAC Y +EM+ +G+
Sbjct: 523 KSREACRYLEEMLDKGM 539



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 139/281 (49%), Gaps = 5/281 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           L+ SL + +       L +++++   P ++T   + +L+  +   R + +A  + ++M  
Sbjct: 270 LLDSLGRAKLGKEAQVLFDKLKERFTPNMMT---YTVLLNGWCRVRNLIEAARIWNDMID 326

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVE 261
            G +PD      +L+ L ++    +A KLF  M+ +   P++R +T ++  +CK+  +  
Sbjct: 327 QGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 386

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A      M D+G +PD  VY  L++G+    K+   +ELLKEM+ KG  P+  +Y  LI+
Sbjct: 387 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIK 446

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            +   +  E A R + +M ++  E  + T+  ++  +  +R  +    + + MI++GI P
Sbjct: 447 LMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICP 506

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +  +Y  ++     + +  E    + EM   G    + +YN
Sbjct: 507 DDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYN 547



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 6/252 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +  +++ L + RK      L   M+ + P       + I++R F     ++ AIE  D+
Sbjct: 335 AHNVMLEGLLRSRKKSDAIKLFHVMKSKGP-CPNVRSYTIMIRDFCKQSSMETAIEYFDD 393

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G +PD  V+ CL+        +    +L  EM+E+   P  + + +L+     +  
Sbjct: 394 MVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +  +M     EP I  +N ++  Y           + +EM +KG  P+ NSYTV
Sbjct: 454 PEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTV 513

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI+ L    K  EA R   EM   G +  ++ Y    + F +  +     EI + + QR 
Sbjct: 514 LIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQP----EIFEELAQRA 569

Query: 379 ILPNQLTYLHIM 390
               +     I 
Sbjct: 570 KFSGKFAAAEIF 581


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/412 (32%), Positives = 222/412 (53%), Gaps = 2/412 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           +VE++ +++ +  +    +E+ L   GV L   L   V+ R   A    +R++  A K+P
Sbjct: 35  EVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCXAGKRP 94

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            + H    Y  ++  L + R+F  + A +EEM ++   L+T E F I ++ FA A+  KK
Sbjct: 95  GFAHDSRTYNFMMCVLGRTRQFETMVAKLEEMGEK--GLLTMETFSIAIKAFAEAKQRKK 152

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
            + + D M KYG +    V   LLD+L      KEA  +F+++++RF PSL+ +T LL G
Sbjct: 153 EVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSG 212

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+   L+EA  V  +M D GF PDIV +N +L G  +  K +DA +L + M+ KG  PN
Sbjct: 213 WCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPN 272

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             SYT++IQ  C+ + M EA   F  M   GC+ D   YT LI+GF + +K+D  Y +L 
Sbjct: 273 VRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLK 332

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M +RG  P+  TY  ++     +   ++ V +  +M + G  P +  YN++++      
Sbjct: 333 EMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTK 392

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
             +    +W+EM      P  +S++V + G + Q    EAC+Y +EM+ +G+
Sbjct: 393 NYEMGHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGM 444



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 153/319 (47%), Gaps = 11/319 (3%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           DV   L+ SLS  +      A+ E+++    P L T   + IL+  +   + + +A  V 
Sbjct: 170 DVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQT---YTILLSGWCRLKNLLEAGRVW 226

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
           +EM   G  PD      +L+ L K     +A KLF+ M+ +   P++R +T ++  +CK+
Sbjct: 227 NEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQ 286

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + EA      M D G +PD  +Y  L++G+ +  KM   + LLKEMR +GC P+  +Y
Sbjct: 287 KLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTY 346

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI+ +      ++A R + +M +SG +  + TY  ++  +  ++  +  +EI D M  
Sbjct: 347 NALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHP 406

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG---- 432
           +G  P+  +Y+  +    +++   E  + + EM + G      +YN       K G    
Sbjct: 407 KGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKALKLDYNKFASDISKTGNAVI 466

Query: 433 --ELKEAVNVWNEMEAASL 449
             EL   +N   + E +++
Sbjct: 467 LEELARKMNFVGKFEVSNV 485



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 12/256 (4%)

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +R G   D  TY  ++    ++R+ +     L+ M ++G+L  +   + I    E K+  
Sbjct: 92  KRPGFAHDSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGLLTMETFSIAIKAFAEAKQRK 151

Query: 400 EECVELMGEMRKIG--CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +E V +   M+K G     DV N+ +      KLG  KEA  V+ +++    +P   ++ 
Sbjct: 152 KE-VGIFDLMKKYGFKVGVDVINFLLDSLSTAKLG--KEAQAVFEKLKD-RFTPSLQTYT 207

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +++ G+     L+EA   + EM+ RG    P       +L  LL+ +K   A  ++  + 
Sbjct: 208 ILLSGWCRLKNLLEAGRVWNEMIDRGF--NPDIVAHNVMLEGLLKCKKKSDAIKLFEIMK 265

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
            KG   NV ++TI I        + EA  Y   M+D    P    +  L+ G    + RQ
Sbjct: 266 AKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITG----FGRQ 321

Query: 578 IAAEITEKVRKMAAER 593
              ++   + K   ER
Sbjct: 322 KKMDMVYSLLKEMRER 337


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 217/429 (50%), Gaps = 3/429 (0%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V +I R+L         LEL+L      +   L ++V+ RC + G   +R+++WA   P 
Sbjct: 47  VNEISRLLSDHRYPHHDLELSLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLWAKSIPG 106

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + HS   +  L++ L   ++F  +W  + EMR      I +E+F ++ R ++ A +   A
Sbjct: 107 FQHSVMSFHILVEILGSCKQFAILWDFLIEMRGSCHYEINSEIFWLIFRAYSQANLPDGA 166

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I   + M ++G +P    F  LL  LCK   VK+A + FD+ + RF  + + ++ L+ GW
Sbjct: 167 IRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAKTYSILISGW 226

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
              G   +A  +   M + G   D++ YNNLL    + G + +A  +  +M  K  +P+A
Sbjct: 227 GDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDA 286

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y++ I + C  + ++ A R   +M R     +V TY  +I   CK+  ++  Y +LD 
Sbjct: 287 FTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLLLDE 346

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           MI RG+ P+  +Y  I   H    E+   + LM  M K  C+PD   YN+V++L  ++G 
Sbjct: 347 MISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRIGR 406

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQYGT 492
             +   VW  M      P   ++ VM+HGF   +G L EAC+YF+ M+  G+   P   T
Sbjct: 407 FDKVTKVWGNMGDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGI--PPYVTT 464

Query: 493 LKALLNSLL 501
           ++ L N LL
Sbjct: 465 VEMLRNQLL 473



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  +IK L K       + L++EM  R  +P    T  +  +         V +AI ++
Sbjct: 323 TYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPD---TWSYNAIQAYHCDHCEVNRAIRLM 379

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
             M K  C PD   +  +L  L +     +  K++  M ++ F PS+  ++ +++G+CK+
Sbjct: 380 FRMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKKFYPSVSTYSVMIHGFCKK 439

Query: 257 -GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            GKL EA      M D G  P +     L +    +G + D  E+L    R+ 
Sbjct: 440 KGKLEEACKYFEMMIDEGIPPYVTTVEMLRNQLLGLGFL-DHIEILAAKMRQS 491



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+  +N M+   + P  + F  ++        + +A ++F +   R LL+A  Y  L + 
Sbjct: 166 AIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAKTYSILISG 225

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
              +  ++K   A +++  ++ +GC +++ A+   + +L   G V EA +   DM+   V
Sbjct: 226 WGDIGDSEK---AHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRV 282

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            P   T++  +       + Q A  + +K+R+
Sbjct: 283 EPDAFTYSIFIHSYCDADDVQSALRVLDKMRR 314



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 107/236 (45%), Gaps = 14/236 (5%)

Query: 343 GCEADVVTYTTLIS--GFCKSRKIDRCYEILDSMIQ-RGILP---NQLTYLHIMLAHEKK 396
           G +  V+++  L+   G CK   I     + D +I+ RG      N   +  I  A+ + 
Sbjct: 106 GFQHSVMSFHILVEILGSCKQFAI-----LWDFLIEMRGSCHYEINSEIFWLIFRAYSQA 160

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
              +  +     M + G  P +++++ ++ + CK   +K+A   +++ +   L     ++
Sbjct: 161 NLPDGAIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAK-TY 219

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            +++ G+   G   +A E F+ M+ +G            LL +L +   V+ AK ++  +
Sbjct: 220 SILISGWGDIGDSEKAHELFQAMLEQG--CPVDLLAYNNLLQALCKGGCVDEAKTIFHDM 277

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           ++K  E + + ++I+IHS      V+ A      M   +++P   T+  +++ L K
Sbjct: 278 LSKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCK 333


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 128/428 (29%), Positives = 235/428 (54%), Gaps = 6/428 (1%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           P++   L   GV + P L   V+    +AG L   ++ WA +Q  + ++ + +  LI++L
Sbjct: 116 PRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEAL 175

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
            K+++F  VW+L+E MR     L++ + F +++RR+A AR VK+A+E  ++M  +G + +
Sbjct: 176 GKIKQFKLVWSLVETMRCRG--LLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTE 233

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
              +  L+D L K+  VK+A  ++ EM+ +  F P L+ +T L+ GW  E  L+  K + 
Sbjct: 234 LSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMY 293

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M DAG  PD+V Y  L+S + + GK  +A ++  EM   GC P+ + Y +LI  L   
Sbjct: 294 QEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSE 353

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
           E+++EA + F + ++SG   +V T   ++  +C++ K +  ++++D M +  I PN  TY
Sbjct: 354 ERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTY 413

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             I+    K ++ EE   +   M   GC P ++ Y +++ + C  G +  A+NVW +M  
Sbjct: 414 DVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGE 473

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             + P    F  +++G   +  L EAC YF+EM+ +G+   P       L  +L+   ++
Sbjct: 474 RGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGI--RPPGQLFSNLKEALVEGGRI 531

Query: 507 EMAKDVWS 514
            +A+++ S
Sbjct: 532 SLAQEMAS 539



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 172/376 (45%), Gaps = 3/376 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  L++AL K    K    L + MR R   S   F  ++  + +  K+ EA     +M  
Sbjct: 168 FHNLIEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSI 227

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKME 330
            G + ++  YN L+   ++  ++  A  + KEM+RKG   P+  +YTVL++     + + 
Sbjct: 228 FGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLL 287

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
                + EM  +G   DVV Y  LIS FCKS K D   ++   M   G +P+   Y  ++
Sbjct: 288 MVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLI 347

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                +E L+E ++   + +K G   +V   N V+   C+  + + A  + +EM    + 
Sbjct: 348 NGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIG 407

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P + ++ V++H  +      EA   F+ M   G    PQ  T   ++       +V+MA 
Sbjct: 408 PNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDG--CEPQLNTYTMMVGMFCSNGRVDMAL 465

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +VW  +  +G    ++ ++  I+ L     ++EAC Y  +M+D  + P    F+ L   L
Sbjct: 466 NVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEAL 525

Query: 571 KKLYNRQIAAEITEKV 586
            +     +A E+  K+
Sbjct: 526 VEGGRISLAQEMASKL 541


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 234/437 (53%), Gaps = 5/437 (1%)

Query: 51  KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
           +E + +C+N  +T  S  E S    +VE++ +++ +  +    +E  L    + L   L 
Sbjct: 105 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 164

Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
             V+ R   A    +R++ WA+++  + H+   Y +++  L+K R+F  + +++EEM  +
Sbjct: 165 VEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTK 224

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
              L+T E F I M+ FA+A+  KKA+ + + M KY  +       CLLD+L +    KE
Sbjct: 225 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282

Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
           A  LFD+++ERF P++  +T LL GWC+   L+EA  +   M D G +PDIV +N +L G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 342

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             +  K +DA +L   M+ KG  PN  SYT++I+  C+   ME A   F +M  SG + D
Sbjct: 343 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
              YT LI+GF   +K+D  YE+L  M ++G  P+  TY  ++     ++  E    +  
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN 462

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M +    P +  +N++++        +    VW+EM    + P  +S+ V++ G + +G
Sbjct: 463 KMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEG 522

Query: 468 CLIEACEYFKEMVGRGL 484
              EAC Y +EM+ +G+
Sbjct: 523 KSREACRYLEEMLDKGM 539



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 139/281 (49%), Gaps = 5/281 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           L+ SL + +       L +++++   P ++T   + +L+  +   R + +A  + ++M  
Sbjct: 270 LLDSLGRAKLGKEAQVLFDKLKERFTPNMMT---YTVLLNGWCRVRNLIEAARIWNDMID 326

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVE 261
           +G +PD      +L+ L ++    +A KLF  M+ +   P++R +T ++  +CK+  +  
Sbjct: 327 HGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 386

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A      M D+G +PD  VY  L++G+    K+   +ELLKEM+ KG  P+  +Y  LI+
Sbjct: 387 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIK 446

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            +   +  E   R + +M ++  E  + T+  ++  +  +R  +    + D MI++GI P
Sbjct: 447 LMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICP 506

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +  +Y  ++     + +  E    + EM   G    + +YN
Sbjct: 507 DDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYN 547


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 233/437 (53%), Gaps = 5/437 (1%)

Query: 51  KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
           +E + +C+N  +T  S  E S    +VE++ +++ +  +    +E  L    + L   L 
Sbjct: 104 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 163

Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
             V+ R   A    +R++ WA+++  + H    Y +++  L+K R+F  + +++EEM  +
Sbjct: 164 VEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK 223

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
              L+T E F I M+ FA+A+  KKA+ + + M KY  +       CLLD+L +    KE
Sbjct: 224 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 281

Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
           A  LFD+++ERF P++  +T LL GWC+   L+EA  +   M D G +PDIV +N +L G
Sbjct: 282 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 341

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             +  K +DA +L   M+ KG  PN  SYT++I+  C+   ME A   F +M  SG + D
Sbjct: 342 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 401

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
              YT LI+GF   +K+D  YE+L  M ++G  P+  TY  ++     ++  E    +  
Sbjct: 402 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN 461

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M +    P +  +N++++        +    VW+EM    + P  +S+ V++ G + +G
Sbjct: 462 KMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEG 521

Query: 468 CLIEACEYFKEMVGRGL 484
              EAC Y +EM+ +G+
Sbjct: 522 KSREACRYLEEMLDKGM 538



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 139/281 (49%), Gaps = 5/281 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           L+ SL + +       L +++++   P ++T   + +L+  +   R + +A  + ++M  
Sbjct: 269 LLDSLGRAKLGKEAQVLFDKLKERFTPNMMT---YTVLLNGWCRVRNLIEAARIWNDMID 325

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVE 261
           +G +PD      +L+ L ++    +A KLF  M+ +   P++R +T ++  +CK+  +  
Sbjct: 326 HGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 385

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A      M D+G +PD  VY  L++G+    K+   +ELLKEM+ KG  P+  +Y  LI+
Sbjct: 386 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIK 445

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            +   +  E   R + +M ++  E  + T+  ++  +  +R  +    + D MI++GI P
Sbjct: 446 LMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICP 505

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +  +Y  ++     + +  E    + EM   G    + +YN
Sbjct: 506 DDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYN 546


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 230/451 (50%), Gaps = 11/451 (2%)

Query: 64  HGSHNEFSHDVEKIFRILKKFHSRLPKLELA--LQHSGVVLRPGLTERVINRCGDAGNLG 121
           H +  + S DV  +  I+K   SR    ELA  L      +   +  +V+ +      + 
Sbjct: 71  HSTVLDGSKDVH-VSEIVKILKSRDGDSELAEVLNQFSDEMDEDVVLKVLQKQRSNWKVA 129

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ-LITTEVFVIL 180
             ++ WA+  P Y H    Y  ++  L +M+K   +  L +E+  E  Q +IT  +F +L
Sbjct: 130 LSFFKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPMESRQSVITNRMFAVL 189

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           + R+A A  V++AI++  +   YG E D   F  LL +LC+   V+EA  LF + ++ F 
Sbjct: 190 LNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP 249

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P ++ +  +L GWC +G L +AK V  ++  +  +PD+  Y   ++   + GK++ A +L
Sbjct: 250 PVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKL 309

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
              M  KG +P+      +I  LC  +++ EA   F EM   GC+ADV TY TLI  FCK
Sbjct: 310 FTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCK 369

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++++ YE+LD M  +G+ PN +TY +I+   EK +++   + LM  M K GC  D   
Sbjct: 370 INRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV---ISLMQRMEKSGCRLDSDT 426

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN+++ L       K    VW+EME     P   SF +MVHG    G L EA  Y++ M 
Sbjct: 427 YNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHGKLDEALHYYRTME 486

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            RG+   P+      LL   +R +K E A +
Sbjct: 487 SRGMTPEPR----TKLLVKAIRMKKDEPATE 513



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 164/351 (46%), Gaps = 9/351 (2%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +LD L +   V+   +LFDE+    + S+   R F  LL  +    K+ EA  +  + KD
Sbjct: 152 MLDILGRMKKVRLMRQLFDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKD 211

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            GFE D+V +  LL    +   + +A E L   ++    P   S+ +++   C    + +
Sbjct: 212 YGFELDLVGFQILLMSLCRYKHVEEA-EALFLQKKDEFPPVIKSWNIILNGWCVKGSLAD 270

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A R + E+  S  + D+ TY T I+   KS K+    ++  SM ++GI P+      I+ 
Sbjct: 271 AKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIID 330

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               K+ + E +E+ GEM   GC  DV+ YN +I+  CK+  +++   + ++ME   +SP
Sbjct: 331 QLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSP 390

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  ++        +I   +  ++   R  L +  Y  +  L  S    + V++   
Sbjct: 391 NNMTYSYILKTTEKPKDVISLMQRMEKSGCR--LDSDTYNLILNLYVSWDYEKGVQL--- 445

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           VW  +   G   +  ++TI +H L S+G + EA  Y   M    + P+P T
Sbjct: 446 VWDEMERNGSGPDQRSFTIMVHGLHSHGKLDEALHYYRTMESRGMTPEPRT 496


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 219/438 (50%), Gaps = 3/438 (0%)

Query: 65  GSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRY 124
           GS       V +I RIL    +    LE+ L      +   L E+V+ RC +     +R+
Sbjct: 42  GSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRF 101

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           ++WA + P +  S D Y  ++  L    +F  +W  + E+R+ +  +IT E+F  +   +
Sbjct: 102 FLWAKRIPGFEPSDDSYHIVVDILGSSGQFAILWDFLIEIRETRSSVITHELFWHVFTAY 161

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR 244
           + A + + AI   + M ++G          LL  LCK   V  A + FD+++  F PS++
Sbjct: 162 SRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVK 221

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++ L  GW   G    A+ V  +M++ G   D++ YN+LL    + GK  +A+++  EM
Sbjct: 222 TYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEM 281

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              G DP+A++Y++ I++ C+   +    R     +R     +V TY  +I   CK + +
Sbjct: 282 DSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNV 341

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +  Y+ILD MI+RG+ P+  +Y  I   H    E+   + L+  M +  CVPD   YN+V
Sbjct: 342 EEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMV 401

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC-LIEACEYFKEMVGRG 483
           ++L  ++G    A  VW  M      P   ++ VM+HGF  +   L EAC+YF+ M+  G
Sbjct: 402 LKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEG 461

Query: 484 LLSAPQYGTLKALLNSLL 501
           +   P   T++ L + LL
Sbjct: 462 I--PPYIATVELLRDRLL 477


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 200/367 (54%), Gaps = 4/367 (1%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE-VFVILMR 182
           ++ WA+  P Y H    Y  ++  L +M+K   +  L +E+ +++  L+ T  +F +L+ 
Sbjct: 132 FFTWAAGLPTYEHGPRTYIEMLDILGRMKKVRLMRQLFDEIPEQRRGLVVTNRMFAVLLN 191

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242
           R+A A  V++AIE+  +   YG E D   F  LL +LC+   V+EA  LF + ++ F P 
Sbjct: 192 RYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPV 251

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           ++ +  +L GWC +G L +AK V  ++  +  +PD+  Y   ++   + GK++ A +L  
Sbjct: 252 IKSWNIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKLSTAVKLFT 311

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M  KG +P+      +I  LC  +K+ EA + F EM   GC+ADV TY TLI  FCK R
Sbjct: 312 SMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLIKHFCKIR 371

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           + ++ YE+LD M ++G  PN +TY +I+   EK  ++   + L+  M + GC  D   YN
Sbjct: 372 RTEKVYELLDDMEKKGCSPNNMTYTYILKTTEKPRDV---MNLIQRMEESGCKLDSDTYN 428

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           +++ L   +   K    VW EME     P   SF +MVHG   QG L +A +Y+  M  R
Sbjct: 429 LILNLYVSMKYEKGVQQVWEEMERNGSGPDQRSFTIMVHGLHSQGQLDQALQYYTTMKSR 488

Query: 483 GLLSAPQ 489
           G+   P+
Sbjct: 489 GMTPEPR 495



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 168/366 (45%), Gaps = 11/366 (3%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYGWCKE 256
           +P Y   P  ++   +LD L +   V+   +LFDE+ E+ +  +   R F  LL  +   
Sbjct: 139 LPTYEHGPRTYIE--MLDILGRMKKVRLMRQLFDEIPEQRRGLVVTNRMFAVLLNRYAGA 196

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            K+ EA  +  +  D GFE D+V +  LL    +   + +A E L   ++    P   S+
Sbjct: 197 HKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEA-EALFLQKKDEFPPVIKSW 255

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +++   C    + +A R + E+  S  + D+ TY T I+   K+ K+    ++  SM +
Sbjct: 256 NIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKLSTAVKLFTSMWE 315

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI P+      I+     K+++ E +++ GEM   GC  DV+ YN +I+  CK+   ++
Sbjct: 316 KGINPDVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLIKHFCKIRRTEK 375

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
              + ++ME    SP   ++  ++        ++   +  +E  G  L S     T   +
Sbjct: 376 VYELLDDMEKKGCSPNNMTYTYILKTTEKPRDVMNLIQRMEES-GCKLDS----DTYNLI 430

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           LN  +  +  +  + VW  +   G   +  ++TI +H L S G + +A  Y   M    +
Sbjct: 431 LNLYVSMKYEKGVQQVWEEMERNGSGPDQRSFTIMVHGLHSQGQLDQALQYYTTMKSRGM 490

Query: 557 MPQPDT 562
            P+P T
Sbjct: 491 TPEPRT 496



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 162/345 (46%), Gaps = 14/345 (4%)

Query: 76  KIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYV 135
           K  R++++    +P+     Q  G+V+   +   ++NR   A  +     ++  K+ +Y 
Sbjct: 160 KKVRLMRQLFDEIPE-----QRRGLVVTNRMFAVLLNRYAGAHKVQEAIEIFY-KRNDYG 213

Query: 136 HSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
              D+  ++ L+ SL + +      AL  + + E P +I +  + I++  +     +  A
Sbjct: 214 FEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKS--WNIILNGWCVKGSLPDA 271

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
             V +E+     +PD F +G  ++AL K   +  A KLF  M E+   P +     ++  
Sbjct: 272 KRVWNEIIASKLKPDLFTYGTFINALTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQ 331

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            C + K+ EA  +  +M D G + D+  YN L+  + ++ +    +ELL +M +KGC PN
Sbjct: 332 LCFKKKIPEALKIFGEMNDRGCQADVATYNTLIKHFCKIRRTEKVYELLDDMEKKGCSPN 391

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT +++     EK  +       ME SGC+ D  TY  +++ +   +      ++ +
Sbjct: 392 NMTYTYILKT---TEKPRDVMNLIQRMEESGCKLDSDTYNLILNLYVSMKYEKGVQQVWE 448

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            M + G  P+Q ++  ++     + +L++ ++    M+  G  P+
Sbjct: 449 EMERNGSGPDQRSFTIMVHGLHSQGQLDQALQYYTTMKSRGMTPE 493



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 7/232 (3%)

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K KP L T   F+        A  +  A+++   M + G  PD  +  C++D LC    +
Sbjct: 282 KLKPDLFTYGTFI---NALTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKI 338

Query: 226 KEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            EA K+F EM +R  +  +  + +L+  +CK  +  +   +L  M+  G  P+ + Y  +
Sbjct: 339 PEALKIFGEMNDRGCQADVATYNTLIKHFCKIRRTEKVYELLDDMEKKGCSPNNMTYTYI 398

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           L       K  D   L++ M   GC  ++++Y +++     M+  +   + + EMER+G 
Sbjct: 399 LK---TTEKPRDVMNLIQRMEESGCKLDSDTYNLILNLYVSMKYEKGVQQVWEEMERNGS 455

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             D  ++T ++ G     ++D+  +   +M  RG+ P   T + +   H KK
Sbjct: 456 GPDQRSFTIMVHGLHSQGQLDQALQYYTTMKSRGMTPEPRTRILVKAIHIKK 507


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 219/438 (50%), Gaps = 3/438 (0%)

Query: 65  GSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRY 124
           GS       V +I RIL    +    LE+ L      +   L E+V+ RC +     +R+
Sbjct: 42  GSDPTLPFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRF 101

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           ++WA + P +  S D Y  ++  L    +F  +W  + E+R+ +  +IT E+F  +   +
Sbjct: 102 FLWAKRIPGFEPSDDSYHIVVDILGGSGQFAILWDFLIEIRETRSSVITHELFWHVFTAY 161

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR 244
           + A + + AI   + M ++G          LL  LCK   V  A + FD+++  F PS++
Sbjct: 162 SRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVK 221

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++ L  GW   G    A+ V  +M++ G   D++ YN+LL    + GK  +A+++  EM
Sbjct: 222 TYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEM 281

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              G DP+A++Y++ I++ C+   +    R     +R     +V TY  +I   CK + +
Sbjct: 282 DSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNV 341

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +  Y+ILD MI+RG+ P+  +Y  I   H    E+   + L+  M +  CVPD   YN+V
Sbjct: 342 EEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMV 401

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC-LIEACEYFKEMVGRG 483
           ++L  ++G    A  VW  M      P   ++ VM+HGF  +   L EAC+YF+ M+  G
Sbjct: 402 LKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEG 461

Query: 484 LLSAPQYGTLKALLNSLL 501
           +   P   T++ L + LL
Sbjct: 462 I--PPYIATVELLRDRLL 477


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 220/416 (52%), Gaps = 5/416 (1%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S DV KI +++K   S   +L   L+   V     L   +++R  +     + +++WA K
Sbjct: 94  SEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGK 153

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q  YV S   Y ++I  L KMRKF   W L++EMRK  P L+ ++  +I++R++ +   V
Sbjct: 154 QQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDV 213

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
            KAI       ++  E     F  LL ALC+  +V +A  L    ++++    + F  +L
Sbjct: 214 GKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVL 273

Query: 251 YGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
            GWC   G   EA+ V ++M + G + D+V Y++++S Y++ G +    +L   M+++  
Sbjct: 274 NGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECI 333

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCY 368
           +P+   Y  ++ AL +   + EA      ME   G E +VVTY +LI   CK+RK +   
Sbjct: 334 EPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAK 393

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ D M+++G+ P   TY   M      EE+    EL+ +MRK+GC P V  Y ++IR  
Sbjct: 394 QVFDEMLEKGLFPTIRTYHAFMRILRTGEEV---FELLAKMRKMGCEPTVETYIMLIRKL 450

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           C+  +    + +W+EM+  ++ P   S++VM+HG    G + EA  Y+KEM  +G+
Sbjct: 451 CRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGM 506



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 164/359 (45%), Gaps = 18/359 (5%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY---GWCKEGKLVEAKYVLVQ 268
           +  ++  L K      A  L DEMR +F PSL +  +LL     +C    + +A      
Sbjct: 164 YHSMISILGKMRKFDTAWTLIDEMR-KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHA 222

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYTVLIQALCR-M 326
            K    E  I  + +LLS   +   ++DA  L+     K   P +A S+ +++   C  +
Sbjct: 223 YKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLI--FCNKDKYPFDAKSFNIVLNGWCNVI 280

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               EA R ++EM   G + DVV+Y+++IS + K   +++  ++ D M +  I P++  Y
Sbjct: 281 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVY 340

Query: 387 LHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
             ++ A  K   + E   LM  M +  G  P+V  YN +I+  CK  + +EA  V++EM 
Sbjct: 341 NAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 400

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG--RGLLSAPQYGTLKALLNSLLRA 503
              L P   ++    H F+    ++   E   E++   R +   P   T   L+  L R 
Sbjct: 401 EKGLFPTIRTY----HAFMR---ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRW 453

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +  +    +W  +  K    ++ ++ + IH LF NG ++EA  Y  +M D  + P  + 
Sbjct: 454 RDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENV 512



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKP 241
           ++    + K +++ D M K   EPD  V+  ++ AL K S V EA  L   M E    +P
Sbjct: 312 YSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEP 371

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  + SL+   CK  K  EAK V  +M + G  P I  Y+  +    + G+  + FELL
Sbjct: 372 NVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR-ILRTGE--EVFELL 428

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +MR+ GC+P   +Y +LI+ LCR    +     + EM+      D+ +Y  +I G   +
Sbjct: 429 AKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLN 488

Query: 362 RKIDRCYEILDSMIQRGILPNQ 383
            KI+  Y     M  +G+ PN+
Sbjct: 489 GKIEEAYGYYKEMKDKGMRPNE 510



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y +LIK L K RK      + +EM  EK    T   +   MR     R  
Sbjct: 370 EPNVV----TYNSLIKPLCKARKTEEAKQVFDEML-EKGLFPTIRTYHAFMRIL---RTG 421

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++  E+L +M K GCEP    +  L+  LC+         L+DEM+E+   P L  +  +
Sbjct: 422 EEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVM 481

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           ++G    GK+ EA     +MKD G  P+  V + + S ++
Sbjct: 482 IHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFS 521



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 39/215 (18%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKA 193
           H    Y ++I   SK      V  L + M+KE  +P     +V+  ++   A A  V +A
Sbjct: 300 HDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPD---RKVYNAVVHALAKASFVSEA 356

Query: 194 IEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-------------- 238
             ++  M +  G EP+   +  L+  LCK    +EA ++FDEM E+              
Sbjct: 357 RNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR 416

Query: 239 -------------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
                               +P++  +  L+   C+         +  +MK+    PD+ 
Sbjct: 417 ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLS 476

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            Y  ++ G    GK+ +A+   KEM+ KG  PN N
Sbjct: 477 SYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNEN 511


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 220/416 (52%), Gaps = 5/416 (1%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S DV KI +++K   S   +L   L+   V     L   +++R  +     + +++WA K
Sbjct: 54  SEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGK 113

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q  YV S   Y ++I  L KMRKF   W L++EMRK  P L+ ++  +I++R++ +   V
Sbjct: 114 QQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDV 173

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
            KAI       ++  E     F  LL ALC+  +V +A  L    ++++    + F  +L
Sbjct: 174 GKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVL 233

Query: 251 YGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
            GWC   G   EA+ V ++M + G + D+V Y++++S Y++ G +    +L   M+++  
Sbjct: 234 NGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECI 293

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCY 368
           +P+   Y  ++ AL +   + EA      ME   G E +VVTY +LI   CK+RK +   
Sbjct: 294 EPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAK 353

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ D M+++G+ P   TY   M      EE+    EL+ +MRK+GC P V  Y ++IR  
Sbjct: 354 QVFDEMLEKGLFPTIRTYHAFMRILRTGEEV---FELLAKMRKMGCEPTVETYIMLIRKL 410

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           C+  +    + +W+EM+  ++ P   S++VM+HG    G + EA  Y+KEM  +G+
Sbjct: 411 CRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGM 466



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 164/359 (45%), Gaps = 18/359 (5%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY---GWCKEGKLVEAKYVLVQ 268
           +  ++  L K      A  L DEMR +F PSL +  +LL     +C    + +A      
Sbjct: 124 YHSMISILGKMRKFDTAWTLIDEMR-KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHA 182

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYTVLIQALCR-M 326
            K    E  I  + +LLS   +   ++DA  L+     K   P +A S+ +++   C  +
Sbjct: 183 YKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLI--FCNKDKYPFDAKSFNIVLNGWCNVI 240

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               EA R ++EM   G + DVV+Y+++IS + K   +++  ++ D M +  I P++  Y
Sbjct: 241 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVY 300

Query: 387 LHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
             ++ A  K   + E   LM  M +  G  P+V  YN +I+  CK  + +EA  V++EM 
Sbjct: 301 NAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 360

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG--RGLLSAPQYGTLKALLNSLLRA 503
              L P   ++    H F+    ++   E   E++   R +   P   T   L+  L R 
Sbjct: 361 EKGLFPTIRTY----HAFMR---ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRW 413

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +  +    +W  +  K    ++ ++ + IH LF NG ++EA  Y  +M D  + P  + 
Sbjct: 414 RDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENV 472



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKP 241
           ++    + K +++ D M K   EPD  V+  ++ AL K S V EA  L   M E    +P
Sbjct: 272 YSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEP 331

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  + SL+   CK  K  EAK V  +M + G  P I  Y+  +    + G+  + FELL
Sbjct: 332 NVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR-ILRTGE--EVFELL 388

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +MR+ GC+P   +Y +LI+ LCR    +     + EM+      D+ +Y  +I G   +
Sbjct: 389 AKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLN 448

Query: 362 RKIDRCYEILDSMIQRGILPNQ 383
            KI+  Y     M  +G+ PN+
Sbjct: 449 GKIEEAYGYYKEMKDKGMRPNE 470



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y +LIK L K RK      + +EM  EK    T   +   MR     R  
Sbjct: 330 EPNVV----TYNSLIKPLCKARKTEEAKQVFDEML-EKGLFPTIRTYHAFMRIL---RTG 381

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++  E+L +M K GCEP    +  L+  LC+         L+DEM+E+   P L  +  +
Sbjct: 382 EEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVM 441

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           ++G    GK+ EA     +MKD G  P+  V + + S ++
Sbjct: 442 IHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFS 481



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 39/215 (18%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKA 193
           H    Y ++I   SK      V  L + M+KE  +P     +V+  ++   A A  V +A
Sbjct: 260 HDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPD---RKVYNAVVHALAKASFVSEA 316

Query: 194 IEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF------------- 239
             ++  M +  G EP+   +  L+  LCK    +EA ++FDEM E+              
Sbjct: 317 RNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR 376

Query: 240 --------------------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
                               +P++  +  L+   C+         +  +MK+    PD+ 
Sbjct: 377 ILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLS 436

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            Y  ++ G    GK+ +A+   KEM+ KG  PN N
Sbjct: 437 SYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNEN 471


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 232/426 (54%), Gaps = 6/426 (1%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           PK+   L   GV + P L   V+    +AG L   ++ WA +Q  + ++ + +  LI++L
Sbjct: 112 PKIASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEAL 171

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
            K+++F  VW+L+E MR     L++ + F +++RR+A AR VK+A+E  ++M  +G + +
Sbjct: 172 GKIKQFRLVWSLVETMRCRG--LLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTE 229

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
              +  L+D L K+  VK+A  ++ EM+ +  F P L+ +T L+ GW  E  L+  K + 
Sbjct: 230 LSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMY 289

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M DAG  PD+V Y  L+S + + GK  +A ++  EM   GC P+ + Y +LI  L   
Sbjct: 290 QEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSE 349

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
           E+++EA + F   ++SG   +V T   ++  +C++ K    ++++D M +  + PN  TY
Sbjct: 350 ERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTY 409

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             I+    K ++ EE   +   M   GC P ++ Y +++ + C  G +  A+ VW +M  
Sbjct: 410 DVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGE 469

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             + P    F  +++G   +  L EAC YF+EM+ +G+   P       L  +L++  ++
Sbjct: 470 KGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGI--RPPGQLFSNLKEALVQGGRI 527

Query: 507 EMAKDV 512
            +A++V
Sbjct: 528 SLAQEV 533



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 175/388 (45%), Gaps = 6/388 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  L++AL K    +    L + MR R   S   F  ++  + +  K+ EA     +M  
Sbjct: 164 FHNLIEALGKIKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSI 223

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKME 330
            G + ++  YN L+   ++  ++  A  + KEM+RKG   P+  +YTVL++     + + 
Sbjct: 224 FGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLL 283

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
                + EM  +G   DVV Y  LIS FCKS K D   ++   M   G +P+   Y  ++
Sbjct: 284 MVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLI 343

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                +E L+E ++     +K G   +V   N V+   C+  + + A  + +EM    + 
Sbjct: 344 NGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVG 403

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P + ++ V++H  +      EA   F+ M   G    PQ  T   ++       +V+MA 
Sbjct: 404 PNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDG--CEPQLNTYTMMVGMFCSNGRVDMAL 461

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            VW  +  KG    ++ ++  I+ L     ++EAC Y  +M+D  + P    F+ L   L
Sbjct: 462 KVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEAL 521

Query: 571 KKLYNRQIAAEITEKVRKMAAERQITFK 598
            +     +A E+     K+ A R+  F+
Sbjct: 522 VQGGRISLAQEVA---LKLDAIRKTPFR 546


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 217/420 (51%), Gaps = 6/420 (1%)

Query: 73  DVEKIFRILKKFH-SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ 131
           DV+ I  I + F  +   ++   L+H  + +   L   V++R  +     + +++WA KQ
Sbjct: 11  DVDAIMDIFRGFRDANRIQVRNKLEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWAGKQ 70

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP--QLITTEVFVILMRRFASARM 189
           P Y HS   Y ++I  L KMRKF   WAL++EMR   P   L+T +  +I++RR+ +   
Sbjct: 71  PGYAHSVREYHSMISILGKMRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIRRYCAVHD 130

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V KAI       ++G       F  LL ALC+  +VK+A  L    ++ F  + + F  +
Sbjct: 131 VAKAINTFYAHKRFGFNIGLEEFQSLLSALCRYKNVKDAEYLLFCNKDVFPFNTKSFNII 190

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L GWC  G L + + V  +M   G   D V Y + +S Y+++  +     L ++M+R   
Sbjct: 191 LNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKI 250

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
           DP+   Y  +I +L +   ++EA      ME  G  A+VVTY ++I   CK+R+ D    
Sbjct: 251 DPDRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARA 310

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + + ++QRG+ P   TY H  L   + E  EE  EL+ +MR +GC P    Y ++IR  C
Sbjct: 311 VFEELLQRGLCPTIQTY-HAFLRFLRTE--EEIFELLKKMRTMGCNPTTDTYIMLIRKFC 367

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           +  +L     +W+EM    +SP   S++V++HG    G L +A +Y+ EM  + LL  P+
Sbjct: 368 RWRQLDNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLPEPK 427



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 34/217 (15%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           H    Y + I   SK+R    V  L E+M++ K      +V+  ++   A  R +K+A +
Sbjct: 217 HDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKID-PDRKVYNAVIHSLAKGRCLKEAAD 275

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----------------- 238
           ++  M + G   +   +  ++  LCK     EA  +F+E+ +R                 
Sbjct: 276 LIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQTYHAFLRFLR 335

Query: 239 ----------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                             P+   +  L+  +C+  +L     +  +M + G  PD   Y 
Sbjct: 336 TEEEIFELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYI 395

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            L+ G    GK+ DA +   EM+ K   P      VL
Sbjct: 396 VLIHGLFLNGKLEDAHKYYLEMKEKDLLPEPKIDEVL 432


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 219/421 (52%), Gaps = 5/421 (1%)

Query: 66  SHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY 125
           S +  S DV  I ++LK   S   +L   L+   V     L   ++++  +     + ++
Sbjct: 38  SDDGVSEDVGTIVKLLKNCGSDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFF 97

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA 185
           +WA KQ  YV S   Y ++I  L KMRKF   W L++EMRK  P L+ ++  +I++R++ 
Sbjct: 98  VWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYC 157

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH 245
           +   V KAI       ++  E     F  LL ALC+  +V +A  L    ++ +    + 
Sbjct: 158 AVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKS 217

Query: 246 FTSLLYGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           F  +L GWC   G   EA+ V ++M + G + D+V Y++++S Y++ G +    +L   M
Sbjct: 218 FNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRM 277

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRK 363
           +++  +P+   Y  +I AL +   + EA      ME   G E +VVTY +LI   CK+RK
Sbjct: 278 KKESIEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARK 337

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            +   ++ D M+++G+ P   TY   M      EE+    EL+ +MRK+GC P V  Y +
Sbjct: 338 TEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEV---FELLAKMRKMGCQPTVDTYIM 394

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +IR  C+  +    + +WNEM+   + P   S++VM+HG    G + EA  Y+KEM  +G
Sbjct: 395 LIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKG 454

Query: 484 L 484
           +
Sbjct: 455 M 455



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 166/359 (46%), Gaps = 18/359 (5%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY---GWCKEGKLVEAKYVLVQ 268
           +  ++  L K      A  L DEMR +F PSL +  +LL     +C    + +A      
Sbjct: 113 YHSMISILGKMRKFDTAWTLIDEMR-KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHA 171

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYTVLIQALCR-M 326
            K    E  I  + +LLS   +   ++DA  L+     K   P +A S+ +++   C  +
Sbjct: 172 YKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLI--FCNKDTYPFDAKSFNIVLNGWCNVI 229

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               EA R ++EM   G + DVV+Y+++IS + K   +++  ++ D M +  I P++  Y
Sbjct: 230 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVY 289

Query: 387 LHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
             ++ A  K   + E   LM  M +  G  P+V  YN +I+  CK  + +EA  V++EM 
Sbjct: 290 NAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 349

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG--RGLLSAPQYGTLKALLNSLLRA 503
              L P   ++    H F+    ++   E   E++   R +   P   T   L+  L R 
Sbjct: 350 EKGLFPTIRTY----HAFMR---ILRTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRW 402

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +  +    +W+ +  KG   ++ ++ + IH LF NG ++EA  Y  +M +  + P  + 
Sbjct: 403 RDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKGMRPNENV 461



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 5/202 (2%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKP 241
           ++    + K +++ D M K   EPD  V+  ++ AL K S V EA  L   M E    +P
Sbjct: 261 YSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEP 320

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  + SL+   CK  K  EAK V  +M + G  P I  Y+  +    + G+  + FELL
Sbjct: 321 NVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR-ILRTGE--EVFELL 377

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +MR+ GC P  ++Y +LI+ LCR    +     + EM+  G   D+ +Y  +I G   +
Sbjct: 378 AKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLN 437

Query: 362 RKIDRCYEILDSMIQRGILPNQ 383
            KI+  Y     M ++G+ PN+
Sbjct: 438 GKIEEAYGYYKEMKEKGMRPNE 459



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 35/213 (16%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           H    Y ++I   SK      V  L + M+KE  +    +V+  ++   A A  V +A  
Sbjct: 249 HDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEP-DRKVYNAVIHALAKASFVSEARN 307

Query: 196 VLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--------------- 239
           ++  M +  G EP+   +  L+  LCK    +EA ++FDEM E+                
Sbjct: 308 LMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL 367

Query: 240 ------------------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
                             +P++  +  L+   C+         +  +MK+ G  PD+  Y
Sbjct: 368 RTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSY 427

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             ++ G    GK+ +A+   KEM+ KG  PN N
Sbjct: 428 IVMIHGLFLNGKIEEAYGYYKEMKEKGMRPNEN 460



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y +LIK L K RK      + +EM  EK    T   +   MR     R  
Sbjct: 319 EPNVV----TYNSLIKPLCKARKTEEAKQVFDEML-EKGLFPTIRTYHAFMRIL---RTG 370

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++  E+L +M K GC+P    +  L+  LC+         L++EM+E+   P L  +  +
Sbjct: 371 EEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIVM 430

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           ++G    GK+ EA     +MK+ G  P+  V + + S ++
Sbjct: 431 IHGLFLNGKIEEAYGYYKEMKEKGMRPNENVEDMIQSWFS 470


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 229/451 (50%), Gaps = 11/451 (2%)

Query: 64  HGSHNEFSHDVEKIFRILKKFHSRLPKLELA--LQHSGVVLRPGLTERVINRCGDAGNLG 121
           H +  + S DV  +  I+K   SR    ELA  L      +   +  +V+ +      + 
Sbjct: 71  HSTALDGSKDVH-VSEIVKILKSRDGDSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVA 129

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ-LITTEVFVIL 180
             ++ WA+  P Y H    Y  ++  L +M+K   +  L +E+  E  Q ++T  +F +L
Sbjct: 130 LSFFKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVL 189

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           + R+A A  V++AI++  +   YG E D   F  LL +LC+   V+EA  LF + ++ F 
Sbjct: 190 LNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP 249

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P ++ +  +L GWC +G L +AK V  ++  +  +PD+  Y   ++   + GK++ A +L
Sbjct: 250 PVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKL 309

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
              M  KG +P+      +I  LC  +++ EA   F EM   GC+ADV TY TLI  FCK
Sbjct: 310 FTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCK 369

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++++ YE+LD M  +G+ PN +TY +I+   EK +++   + LM  M K GC  D   
Sbjct: 370 INRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV---ISLMQRMEKSGCRLDSDT 426

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN+++ L       K    VW+EME     P   SF +MVHG      L EA  Y++ M 
Sbjct: 427 YNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTME 486

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            RG+   P+      LL   +R +K E A +
Sbjct: 487 SRGMTPEPR----TKLLVKAIRMKKDEPATE 513



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 9/351 (2%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +LD L +   V+   +LFDE+    + S+   R F  LL  +    K+ EA  +  + KD
Sbjct: 152 MLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKD 211

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            GFE D+V +  LL    +   + +A E L   ++    P   S+ +++   C    + +
Sbjct: 212 YGFELDLVGFQILLMSLCRYKHVEEA-EALFLQKKDEFPPVIKSWNIILNGWCVKGSLAD 270

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A R + E+  S  + D+ TY T I+   KS K+    ++  SM ++GI P+      I+ 
Sbjct: 271 AKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIID 330

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               K+ + E +E+ GEM   GC  DV+ YN +I+  CK+  +++   + ++ME   +SP
Sbjct: 331 QLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSP 390

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  ++        +I   +  ++   R  L +  Y  +  L  S    + V++   
Sbjct: 391 NNMTYSYILKTTEKPKDVISLMQRMEKSGCR--LDSDTYNLILNLYVSWDYEKGVQL--- 445

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           VW  +   G   +  ++TI +H L S+  + EA  Y   M    + P+P T
Sbjct: 446 VWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRT 496


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 243/447 (54%), Gaps = 14/447 (3%)

Query: 58  NNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPG--LTERVINRCG 115
            +T   H +    + D E I RIL    S  P   +    + V  +P   L   V+N+  
Sbjct: 42  THTLAFHTAQPRPTPDAEAICRIL----STTPASTVDACLAAVPAKPSPELVLEVLNKLS 97

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE 175
           +AG L   ++ WA KQ  + H+ + + ALI++L K+R+F  +W L+ +M++ K  L+T++
Sbjct: 98  NAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRK--LLTSD 155

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F ++ RR+A AR  K+AI+  ++M  YG +P    F  L+D LCK+ SV+EA ++FD+M
Sbjct: 156 TFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKM 215

Query: 236 RE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           R+ R  P ++ +T LL GW ++  L++   V  +M+D GF+ D+V Y  +++ + +  K 
Sbjct: 216 RKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKF 275

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A  L  EM+ +G  P+ + Y  LI  L   ++++EA   F   + SG   +  TY  +
Sbjct: 276 DEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAV 335

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMR--K 411
           +  +C S ++D  Y ++  M + GI PN  T+  I+L H  K   +EE   +   M   +
Sbjct: 336 VGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTF-DIVLHHLIKGRRIEEASSVFRRMNGGE 394

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            GC P VS Y +++R+ C    L  AV VW+EM+   + PG   F  +V     +  L E
Sbjct: 395 FGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDE 454

Query: 472 ACEYFKEMVGRGL-LSAPQYGTLKALL 497
           AC+YF+EM+  G+   A  + TLK  L
Sbjct: 455 ACKYFQEMLDVGIRPPAKMFSTLKEAL 481



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 172/378 (45%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  L++AL K    K    L ++M++R   +   F+ +   + +  K  EA     +M+ 
Sbjct: 123 FHALIEALGKIRQFKMIWTLVNDMKQRKLLTSDTFSLVARRYARARKAKEAIKTFEKMEH 182

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G +P +  +N L+    +   + +A E+  +MR+   DP+  SYT+L++   + + + +
Sbjct: 183 YGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMRKLRLDPDIKSYTILLEGWSQQQNLIK 242

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
            N    EME  G + DVV Y  +++  CK++K D    +   M  RG+ P+   Y  ++ 
Sbjct: 243 VNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLIN 302

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
                + L+E +E     +  G VP+   YN V+   C    + +A  +  EM+   + P
Sbjct: 303 GLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGP 362

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + +F +++H  +    + EA   F+ M G      P   T + ++      + ++MA  
Sbjct: 363 NSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVA 422

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           VW  +  KG    ++ ++  + +L     + EAC Y  +M+D  + P    F+ L   L 
Sbjct: 423 VWDEMKGKGILPGMHMFSTLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALV 482

Query: 572 KLYNRQIAAEITEKVRKM 589
                 +A   T K+ K+
Sbjct: 483 DAGMEHVAMHFTLKIDKL 500


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 229/451 (50%), Gaps = 11/451 (2%)

Query: 64  HGSHNEFSHDVEKIFRILKKFHSRLPKLELA--LQHSGVVLRPGLTERVINRCGDAGNLG 121
           H +  + S DV  +  I+K   SR    ELA  L      +   +  +V+ +      + 
Sbjct: 51  HSTALDGSKDVH-VSEIVKILKSRDGDSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVA 109

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ-LITTEVFVIL 180
             ++ WA+  P Y H    Y  ++  L +M+K   +  L +E+  E  Q ++T  +F +L
Sbjct: 110 LSFFKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVL 169

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           + R+A A  V++AI++  +   YG E D   F  LL +LC+   V+EA  LF + ++ F 
Sbjct: 170 LNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP 229

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P ++ +  +L GWC +G L +AK V  ++  +  +PD+  Y   ++   + GK++ A +L
Sbjct: 230 PVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKL 289

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
              M  KG +P+      +I  LC  +++ EA   F EM   GC+ADV TY TLI  FCK
Sbjct: 290 FTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCK 349

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++++ YE+LD M  +G+ PN +TY +I+   EK +++   + LM  M K GC  D   
Sbjct: 350 INRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV---ISLMQRMEKSGCRLDSDT 406

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN+++ L       K    VW+EME     P   SF +MVHG      L EA  Y++ M 
Sbjct: 407 YNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTME 466

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            RG+   P+      LL   +R +K E A +
Sbjct: 467 SRGMTPEPR----TKLLVKAIRMKKDEPATE 493



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 9/351 (2%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +LD L +   V+   +LFDE+    + S+   R F  LL  +    K+ EA  +  + KD
Sbjct: 132 MLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKD 191

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            GFE D+V +  LL    +   + +A E L   ++    P   S+ +++   C    + +
Sbjct: 192 YGFELDLVGFQILLMSLCRYKHVEEA-EALFLQKKDEFPPVIKSWNIILNGWCVKGSLAD 250

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A R + E+  S  + D+ TY T I+   KS K+    ++  SM ++GI P+      I+ 
Sbjct: 251 AKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIID 310

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               K+ + E +E+ GEM   GC  DV+ YN +I+  CK+  +++   + ++ME   +SP
Sbjct: 311 QLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSP 370

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  ++        +I   +  ++   R  L +  Y  +  L  S    + V++   
Sbjct: 371 NNMTYSYILKTTEKPKDVISLMQRMEKSGCR--LDSDTYNLILNLYVSWDYEKGVQL--- 425

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           VW  +   G   +  ++TI +H L S+  + EA  Y   M    + P+P T
Sbjct: 426 VWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRT 476


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/417 (32%), Positives = 226/417 (54%), Gaps = 3/417 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           +V ++ R++ +  +    +E  L    V L   L   V+ R   A    +R++ WA ++ 
Sbjct: 204 EVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKA 263

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            + H+   Y A++  L + R+F ++  ++ EM ++   L+T E F I ++ FA+A+  KK
Sbjct: 264 GFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKG--LLTMETFSIAIKAFAAAKERKK 321

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ V + M +Y  +       CLLD L +    KEA  LF+++ +RF P+LR +T LL G
Sbjct: 322 AVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNG 381

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+   LVEA     +M D GF+PDI+ ++ +L G  +  K +DA +L + M+ KG  PN
Sbjct: 382 WCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPN 441

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT+LI+ LC+  KM+EA   F EM  SGC+ D   YT LI+GF   +K+D+ Y +L 
Sbjct: 442 VRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLK 501

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++G   +  TY  ++     ++  ++ V +  +M + G  P +  YN++++      
Sbjct: 502 EMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTR 561

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
             +    VW EM      P  +S++V + G +  G   EAC Y +EM+ +G + APQ
Sbjct: 562 NYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG-MKAPQ 617



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 184/431 (42%), Gaps = 18/431 (4%)

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
           K G   +   +  ++  L +    +    +  EM E+   ++  F+  +  +    +  +
Sbjct: 262 KAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKK 321

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLS--GYAQMGKMTDA-FELLKEMRRKGCDPNANSYTV 318
           A  V   MK   F+  +   N LL   G A++GK   A FE L++       PN  +YTV
Sbjct: 322 AVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDR----FTPNLRTYTV 377

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+   CR++ + EA R + EM   G + D++ + T++ G  K +K     ++ + M  +G
Sbjct: 378 LLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKG 437

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN  TY  ++    K+ +++E VE   EM   GC PD + Y  +I       ++ +  
Sbjct: 438 PSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVY 497

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  EM+         ++  ++     +    +A   +K+M+  G+   P   T   ++ 
Sbjct: 498 ALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGI--QPTLHTYNMMMK 555

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-M 557
           S    +  EM   VW  +  KGC  +  ++ ++I  L  +G  +EAC Y  +M++  +  
Sbjct: 556 SYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKA 615

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
           PQ D + K      +     I  E+    RKM  E +        R      E  KK+V 
Sbjct: 616 PQLD-YNKFAADFSRAGKPDILEEL---ARKMKFEGKFEVSNVFAR----WAEMMKKRVK 667

Query: 618 GRKRRARQRRW 628
            R      R+W
Sbjct: 668 RRDPVKSDRQW 678



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 40/294 (13%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASAR 188
           K+ N+    D    L+ +L + +      AL E++     P L T   + +L+  +   +
Sbjct: 330 KRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRT---YTVLLNGWCRIK 386

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
            + +A    +EM   G +PD      +L+ L K     +A KLF+ M+ +   P++R +T
Sbjct: 387 NLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYT 446

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+   CK+ K+ EA     +M D+G +PD  VY  L++G+    KM   + LLKEM+ K
Sbjct: 447 ILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEK 506

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFV------------------------------ 337
           GC  +  +Y  LI+ +   +  ++A R +                               
Sbjct: 507 GCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMG 566

Query: 338 -----EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
                EM R GC  D  +Y   I G  +  + +     L+ MI++G+   QL Y
Sbjct: 567 CAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDY 620



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 2/236 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +  +++ L K +K      L E M+ + P       + IL+R       +K+A+E  DE
Sbjct: 409 AHHTMLEGLLKCKKKSDAIKLFEVMKAKGPS-PNVRTYTILIRDLCKQMKMKEAVEYFDE 467

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRHFTSLLYGWCKEGK 258
           M   GC+PD  V+ CL+        + +   L  EM+E+  P+  R + +L+        
Sbjct: 468 MVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQM 527

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +A  +  +M   G +P +  YN ++  Y           + KEM RKGC P+ NSY V
Sbjct: 528 PDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIV 587

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            I  L R  + EEA R   EM   G +A  + Y    + F ++ K D   E+   M
Sbjct: 588 FIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKM 643


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 249/491 (50%), Gaps = 24/491 (4%)

Query: 52  EDDCKCNNTTDTHGSHN-EFSHDVEKIFRILKKFHSRLPKL------------ELALQHS 98
           E D   NNTT  + + + E +H V+K   I+K  + + P              +L+++ S
Sbjct: 35  EHDTNDNNTTPQNTNLSPEDTHIVDKFHTIIKDHYRKNPNPNAVSPSLNLSIPDLSIEFS 94

Query: 99  GVV----LRPGLTERVINRCGDAGN-----LGYRYYMWASKQPNYVHSYDVYRALIKSLS 149
            +     + P +T R I +C    +         ++ WA+    +  S + Y  +I    
Sbjct: 95  KISTVYSVSPSITRRAIEKCSGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAG 154

Query: 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
           K+R F   W L++ M K +   IT   F +L+RR+  A +  +A+   + M  YGC+PD+
Sbjct: 155 KLRHFDLAWHLIDLM-KSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDK 213

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
             F  ++ +LCK     EA   FD ++ +F+P +  +TSL++GWC+ G + +A+ V   M
Sbjct: 214 VSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDM 273

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           K+AG +P++  Y+ ++    + G++T A ++  EM   GCDPNA ++  L++   +  + 
Sbjct: 274 KEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRT 333

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           E+  + + +M+R GC AD ++Y  LI   CK   +D   ++LD+M+++G+ PN  T+  I
Sbjct: 334 EKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSI 393

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
                +  ++     +  +M+++ C+P+   YN+++R+      +   + +  EM+ + +
Sbjct: 394 FGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEV 453

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P  +++ +++  F  +G    A    KEMV    L  P     + +L  L  A +++  
Sbjct: 454 EPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLK-PNLSIYETVLELLRNAGQLKKH 512

Query: 510 KDVWSCIVTKG 520
           +++   +V +G
Sbjct: 513 EELVEKMVARG 523



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L+  M+  G    VS ++V++R   + G   EAV+ +N ME     P   SF +++   
Sbjct: 164 HLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSL 223

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             +    EA  +F  +  +     P      +L++   RA  +  A++V+S +   G + 
Sbjct: 224 CKKRRASEAELFFDSLKHKF---EPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKP 280

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           NVY ++I I SL   G +  A     +M+DA   P   TF  LMR
Sbjct: 281 NVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMR 325


>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
 gi|194690592|gb|ACF79380.1| unknown [Zea mays]
 gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/419 (31%), Positives = 217/419 (51%), Gaps = 4/419 (0%)

Query: 76  KIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYV 135
           ++ ++LK   +    L  AL    V +   +   V+ +      +   ++ WA+  P Y 
Sbjct: 82  QVLKVLKSTSADNTDLSGALHQFAVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPGYA 141

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT-EVFVILMRRFASARMVKKAI 194
           H    Y  ++  L +M+K   +  L +E+ +E+ Q++ T ++F +L+ R+A A  V++AI
Sbjct: 142 HGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAI 201

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
           EV      YG E D   F  LL +LC+   V+EA  LF E ++ F    + +  +L GWC
Sbjct: 202 EVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWC 261

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            +G L +A+ +   +  +  E D+  +   ++  A+ G+++ A +L K+M  KG +P+  
Sbjct: 262 VKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVA 321

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
               +I  LC  +K+ EA   F EM    C+ADV TY TLI   CK +++++ YE+LD M
Sbjct: 322 ICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDM 381

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             +G  PN  TY +I+   EK +++   + LM  M + GC  D   YN+++ L  K    
Sbjct: 382 EAKGCPPNNRTYSYILKTTEKPKDV---IALMQRMERTGCKLDSDIYNLILNLYIKWKYE 438

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           K    +W+EME     P   SF +MVHG   QG L EA +Y+  M  RG++  P+   L
Sbjct: 439 KGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRTKIL 497



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 163/352 (46%), Gaps = 11/352 (3%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +LD L +   V+   +LFDE+ E  +  +   + F  LL  +    K+ EA  V    KD
Sbjct: 150 MLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKD 209

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN-SYTVLIQALCRMEKME 330
            GFE D+V +  LL    +   + +A  L +E  +K   P+   S+ +++   C    + 
Sbjct: 210 YGFELDLVGFQILLMSLCRYKHVEEAEALFRE--KKDEFPHVTKSWNIILNGWCVKGSLR 267

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A R + ++  S  E D+ T+ T I+   K+ +I    ++   M ++GI P+      I+
Sbjct: 268 DAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVAICNCII 327

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                K+++ E +E+ GEM    C  DV+ YN +I+  CK+  +++   + ++MEA    
Sbjct: 328 DQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCP 387

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++  ++        +I   +   E  G  L S         +LN  ++ +  +  +
Sbjct: 388 PNNRTYSYILKTTEKPKDVIALMQRM-ERTGCKLDS----DIYNLILNLYIKWKYEKGMQ 442

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
            +W  +  +G   +  ++TI +H L S G + EA  Y   M    ++P+P T
Sbjct: 443 QIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRT 494



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 125/290 (43%), Gaps = 35/290 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           ++ L+ SL + +      AL  E + E P +  T+ + I++  +     ++ A  + +++
Sbjct: 219 FQILLMSLCRYKHVEEAEALFREKKDEFPHV--TKSWNIILNGWCVKGSLRDAQRIWNDI 276

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
                E D F FG  ++AL KN  +  A KLF +M E+   P +     ++   C + K+
Sbjct: 277 IASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVAICNCIIDQLCFKKKI 336

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM--------------- 304
            EA  +  +M D   + D+  YN L+    ++ +M   +ELL +M               
Sbjct: 337 PEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCPPNNRTYSYI 396

Query: 305 -----------------RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
                             R GC  +++ Y +++    + +  +   + + EMER G   D
Sbjct: 397 LKTTEKPKDVIALMQRMERTGCKLDSDIYNLILNLYIKWKYEKGMQQIWDEMERRGSGPD 456

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
             ++T ++ G     K+D   +   +M  RG++P   T + +   H KK+
Sbjct: 457 QRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRTKILVKAMHMKKD 506


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 225/417 (53%), Gaps = 3/417 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           +V ++ R++ +  +    +E  L    V L   L   V+ R   A    +R++ WA ++ 
Sbjct: 204 EVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKA 263

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            + H+   Y A++  L + R+F ++  ++ EM ++   L+T E F I ++ FA+A+  KK
Sbjct: 264 GFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKG--LLTMETFSIAIKAFAAAKERKK 321

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ V + M +Y  +       CLLD L +    KEA  LF+++ +RF P+LR +T LL G
Sbjct: 322 AVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNG 381

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+   LVEA     +M D GF+PDI+ ++ +L G  +  K +DA +L + M+ KG  PN
Sbjct: 382 WCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPN 441

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT+LI+ LC+  KM+EA   F EM  SGC+ D   YT LI+GF   +K+D+ Y +L 
Sbjct: 442 VRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLK 501

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++G   +  TY  ++     ++  ++ V +  +M + G    +  YN++++      
Sbjct: 502 EMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTR 561

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
             +    VW EM      P  +S++V + G +  G   EAC Y +EM+ +G + APQ
Sbjct: 562 NYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG-MKAPQ 617



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 40/294 (13%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASAR 188
           K+ N+    D    L+ +L + +      AL E++     P L T   + +L+  +   +
Sbjct: 330 KRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRT---YTVLLNGWCRIK 386

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
            + +A    +EM   G +PD      +L+ L K     +A KLF+ M+ +   P++R +T
Sbjct: 387 NLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYT 446

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+   CK+ K+ EA     +M D+G +PD  VY  L++G+    KM   + LLKEM+ K
Sbjct: 447 ILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEK 506

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFV------------------------------ 337
           GC  +  +Y  LI+ +   +  ++A R +                               
Sbjct: 507 GCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMG 566

Query: 338 -----EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
                EM R GC  D  +Y   I G  +  + +     L+ MI++G+   QL Y
Sbjct: 567 CAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDY 620



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 2/236 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +  +++ L K +K      L E M+ + P       + IL+R       +++A+E  DE
Sbjct: 409 AHHTMLEGLLKCKKKSDAIKLFEVMKAKGPS-PNVRTYTILIRDLCKQMKMQEAVEYFDE 467

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRHFTSLLYGWCKEGK 258
           M   GC+PD  V+ CL+        + +   L  EM+E+  P+  R + +L+        
Sbjct: 468 MVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQM 527

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +A  +  +M   G +  +  YN ++  Y           + +EM RKGC P+ NSY V
Sbjct: 528 PDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYIV 587

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            I  L R  + EEA R   EM   G +A  + Y    + F ++ K D   E+   M
Sbjct: 588 FIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKM 643


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 210/421 (49%), Gaps = 5/421 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V +I RI+         LEL+L      +   L E+V+ RC   G   +R+++WA   P 
Sbjct: 43  VNEISRIVSDHRHPRHDLELSLTPFSTQISTDLVEQVLKRCNHLGFSAHRFFLWAKSIPG 102

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL-ITTEVFVILMRRFASARMVKK 192
           + HS   +  L++ L + ++F  +W  + E R+      IT E+F I+   ++ A +   
Sbjct: 103 FQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRADLPDG 162

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           AI     M ++G +P       LL  LCK   V++A + FD+++  F  + + ++ L+ G
Sbjct: 163 AIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTTKTYSILING 222

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           W K G   +A+ +   M + G   D++ YNNLL    + G + +A + L +M  K  +P+
Sbjct: 223 WGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKVEPD 282

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +Y++ I++ C    +  A     +M R     +V TY  +I   CK +K++  Y++LD
Sbjct: 283 AFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQLLD 342

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI  G+ P+  +Y  I   H    E+   ++L+  M K  C PD   YN+V++L  ++G
Sbjct: 343 EMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVLKLLIRIG 402

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQYG 491
              +A  VW  M      P   ++ VM+HG    +G L EAC+YF  M+  G+   P Y 
Sbjct: 403 RFDKATEVWECMGDKKFYPSVSTYSVMIHGLCKKKGKLEEACKYFAMMIDEGI---PPYD 459

Query: 492 T 492
           T
Sbjct: 460 T 460



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+  +  M+   + P      ++++    +  + +A ++F ++    LL+   Y  L   
Sbjct: 163 AIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTTKTYSIL--- 219

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +N   +      A++++  ++ +GC +++ A+   + +L   GHV EA  +  DM+   V
Sbjct: 220 INGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKV 279

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            P   T++  +R      N   A  + +K+R+
Sbjct: 280 EPDAFTYSIFIRSYCDANNVHSAFGVLDKMRR 311


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 211/395 (53%), Gaps = 4/395 (1%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           + P L    + +  +AG L   ++ WA KQ  + +S + Y ALI+SL K+++F  +W L+
Sbjct: 3   VSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLV 62

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
            +M+++   L+  E F ++ RR+A AR VK+A++   +M K+G + +      LLD LCK
Sbjct: 63  TDMKQKG--LLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCK 120

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           +  V+ A  +FD+M +R F   ++ +T LL GW +E  L     V  +MKD GFEPD+V 
Sbjct: 121 SRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVT 180

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y  L++ + +  +  DA EL  EM  K C P+ + Y  LI  L   +++ EA   F   +
Sbjct: 181 YGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSK 240

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            SG   +  TY  ++  +C S ++D     +D M + G+ P+  TY  I+    +  + +
Sbjct: 241 ASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTK 300

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
               +  +M   GC P VS Y +++R+ C    +  A+ VW++M+A  + P    F  ++
Sbjct: 301 IAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLI 360

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLK 494
           +    +  L EAC YF+EM+  G+    Q +  LK
Sbjct: 361 NSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLK 395



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 158/359 (44%), Gaps = 2/359 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L+++L K         L  +M+++   +   F  +   + +  K+ EA    ++M+ 
Sbjct: 42  YHALIESLGKIKQFNVIWNLVTDMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEK 101

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G + +    N LL    +  ++  A  +  +M ++G   +  SYT+L++   + + +  
Sbjct: 102 FGLKIESSDVNRLLDTLCKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSR 161

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
               + EM+  G E DVVTY  LI+  CKSR+ D   E+   M  +   P+   Y  ++ 
Sbjct: 162 LMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLIN 221

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               ++ L E +E     +  G VP+   YN V+   C    + +     +EM    + P
Sbjct: 222 GLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGP 281

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++ +++H  +  G    A   F++M   G    P   T + ++       +V+MA  
Sbjct: 282 SARTYDIILHHLIRAGKTKIAYSVFQKMSCEG--CQPSVSTYEIIVRMFCNEDRVDMAIK 339

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           VW  +  KG    ++ ++  I+SL     + EAC Y  +M+D  + P    F+ L + L
Sbjct: 340 VWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNL 398


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 245/486 (50%), Gaps = 24/486 (4%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           E S+D E +  IL   H+    +E +LQ  G+ L   L  + + R      +   ++ ++
Sbjct: 34  EPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALSFFHYS 93

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
              P+   +   Y  +I  LSK+R+F   W L+ +M +   Q   +  F+IL+RR  SA 
Sbjct: 94  LSLPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQ-PNSHTFLILIRRLISAG 152

Query: 189 MVKKAIEVLDEMPKYGCEP-DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
             ++AI   D+M  +  E  ++  F  LLD LCK   +K A ++F++ + RF P++R +T
Sbjct: 153 FTRQAIRAFDDMESFIAETVNQTHFCFLLDTLCKYGYIKVAVEVFNKRKFRFLPNVRIYT 212

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD----------A 297
            L+YGWCK G++  A+  + +M + G E ++V YN LL G  +  K+            A
Sbjct: 213 VLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERTIMKA 272

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++  EMR+KG +P+  S+++L+    R  K +        ME  G    V TYT+++  
Sbjct: 273 DKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSVLKC 332

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVP 416
            C   +ID   E+L+ M++ G+ PN  TY      +  +++ E  ++L  ++R+   C P
Sbjct: 333 LCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENLCDP 392

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            V  YN+++ +  KL        +WN++ ++   P  DS+ ++VHG   +    +AC++F
Sbjct: 393 SVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFF 452

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            EM+ +GLL  PQ  T + L   L+++  +      W  +  K  E      +I   S F
Sbjct: 453 VEMIEKGLL--PQKATFEMLYAGLIQSNMLR----TWRRLKKKLDE-----ESIAFGSEF 501

Query: 537 SNGHVK 542
           SN H+K
Sbjct: 502 SNYHLK 507


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 230/461 (49%), Gaps = 18/461 (3%)

Query: 76  KIFRILKKFHSRLPK----------LELALQH-SGVVLRPGLTERVINRC-----GDAGN 119
           K   ++K  H R P           L L   H S   + P L   VI +C     G    
Sbjct: 64  KFHSLIKDHHRRNPNFSLPNTPSHSLSLDFSHFSTSPVSPSLVSHVIEKCAAVRHGIPFF 123

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
               ++ WA+ +P + H  + Y  +I    K+R F   W +++ M+    + I+ E F I
Sbjct: 124 QALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVE-ISIETFSI 182

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+RR+  A +  +A+   + M  Y C+PD+  F  L+  LC+     EA   FD ++++F
Sbjct: 183 LIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKF 242

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           +P +  +T+L+ GWC+ G + EA+ V  +MK AG  P++  Y  ++    + G++T A +
Sbjct: 243 EPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHD 302

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +  EM   GC+PN+ ++  L++   +  + E+  + + +M+R GC  D VTY  LI   C
Sbjct: 303 VFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHC 362

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K   +D   ++L+SM+++G  PN  T+  +  +  K  ++     L  +M+++ C  +  
Sbjct: 363 KDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTV 422

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN+++R+          + +  EM+   + P  +++ V++  + G G    A ++F+EM
Sbjct: 423 TYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREM 482

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           V    L  P     + +L  L +A +++  +++ + +V +G
Sbjct: 483 VEEKCLK-PSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRG 522



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 3/173 (1%)

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  ++++IR   + G   EAV+ +N ME  +  P   +F +++     +    EA  +F 
Sbjct: 177 IETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFD 236

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            +  +     P       L+    RA  +  A+ V++ +   GC  NVY +TI I +L  
Sbjct: 237 SLKDK---FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCR 293

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            G +  A     +M+D    P   TF  L+R   K    +   ++  ++++M 
Sbjct: 294 CGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMG 346



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  L  S++K+R       L  +M++ K +   T  + ILMR F   +     +++  EM
Sbjct: 389 FNGLFGSIAKLRDVNGAHRLYAKMKELKCK-ANTVTYNILMRMFVDTKSTDMVLKLKKEM 447

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGK 258
            +   EP+   +  L+   C       A K F EM E    KPSL  +  +L    K G+
Sbjct: 448 DEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQ 507

Query: 259 LVEAKYVLVQMKDAGF 274
           L + + ++  M D GF
Sbjct: 508 LKKHEELVAVMVDRGF 523


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 218/406 (53%), Gaps = 7/406 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  +I    K  +     ++++ M    P ++T   +  ++R    +  +K+A+EVLD 
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRM-SVSPDVVT---YNTILRSLCDSGKLKQAMEVLDR 229

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M +  C PD   +  L++A C++S V  A KL DEMR+R   P +  +  L+ G CKEG+
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA   L  M  +G +P+++ +N +L      G+  DA +LL +M RKG  P+  ++ +
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LCR   +  A     +M + GC+ + ++Y  L+ GFCK +K+DR  E L+ M+ RG
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +TY  ++ A  K  ++E+ VE++ ++   GC P +  YN VI    K G+  +A+
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + +EM A  L P T ++  +V G   +G + EA ++F E    G+   P   T  +++ 
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI--RPNAVTFNSIML 527

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            L ++++ + A D    ++ +GC+ N  ++TI I  L   G  KEA
Sbjct: 528 GLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 191/393 (48%), Gaps = 6/393 (1%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +R+      +++  + L+ M  +G  PD      L+   C+    ++AAK+ + +     
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168

Query: 241 -PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P +  +  ++ G+CK G++  A  VL +M      PD+V YN +L      GK+  A E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +L  M ++ C P+  +YT+LI+A CR   +  A +   EM   GC  DVVTY  L++G C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  ++D   + L+ M   G  PN +T+  I+ +        +  +L+ +M + G  P V 
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N++I   C+ G L  A+++  +M      P + S+  ++HGF  +  +  A EY + M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V RG    P   T   +L +L +  KVE A ++ + + +KGC   +  +   I  L   G
Sbjct: 406 VSRGCY--PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +A     +M   D+ P   T++ L+ GL +
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 34/348 (9%)

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           ++ F  + V  NN L    + G++ + F+ L+ M   G  P+    T LI+  CR+ K  
Sbjct: 95  NSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTR 154

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCK------------------------------ 360
           +A +    +E SG   DV+TY  +ISG+CK                              
Sbjct: 155 KAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSL 214

Query: 361 --SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
             S K+ +  E+LD M+QR   P+ +TY  ++ A  +   +   ++L+ EMR  GC PDV
Sbjct: 215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDV 274

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YNV++   CK G L EA+   N+M ++   P   +  +++      G  ++A +   +
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ +G   +P   T   L+N L R   +  A D+   +   GC+ N  ++   +H     
Sbjct: 335 MLRKGF--SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +  A  Y   M+     P   T+  ++  L K    + A EI  ++
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/419 (30%), Positives = 214/419 (51%), Gaps = 4/419 (0%)

Query: 76  KIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYV 135
           ++ ++LK   +    L  AL+   V +   +   V+ +      +   ++ WA+  P Y 
Sbjct: 90  EVLKVLKSTSADNADLSDALRRFAVHMDEDIILTVLQKQRSNWQVALAFFNWAATLPGYA 149

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAI 194
           H    Y  ++  L +M+K   +  L +E+ +E+   ++T ++F +L+ R+A A  V++AI
Sbjct: 150 HGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNRYAGAHKVQEAI 209

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
           EV      YG E D   F  LL +LC+   V+EA  LF E ++ F    + +  +L GWC
Sbjct: 210 EVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWC 269

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            +G L +A+ +   +  +  E D+  Y   ++  A+ G+++ A +L K+M   G +P+  
Sbjct: 270 VKGSLRDAQRIWNDIIASKVERDLFTYGTFINALAKNGRISAAVKLFKKMWETGINPDVA 329

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
               +I  LC   ++ EA   F EM    C+ADV TY TLI   CK +++++ YE+LD M
Sbjct: 330 ICNCIIDQLCFKNRIPEALEIFGEMNDRLCQADVATYNTLIKYLCKKKRMEKVYELLDDM 389

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             +G  PN  TY +++   EK +++   + LM  M + GC  D   YN+++ L       
Sbjct: 390 EAKGCSPNNRTYSYVLKTTEKPKDV---IALMQRMEQTGCELDSDTYNLILNLYTNWKYE 446

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           K    VW+EME     P   SF +MVHG   QG L EA +Y+  M  RG++  P+   L
Sbjct: 447 KGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRTKIL 505



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 158/352 (44%), Gaps = 11/352 (3%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +LD L +   V+   +LFDE+ E  +  +   + F  LL  +    K+ EA  V    KD
Sbjct: 158 MLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKD 217

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN-SYTVLIQALCRMEKME 330
            GFE D+V +  LL    +   + +A  L +E  +K   P+   S+ +++   C    + 
Sbjct: 218 YGFELDLVGFQILLMSLCRYKHVEEAEALFRE--KKDEFPHVTKSWNIILNGWCVKGSLR 275

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A R + ++  S  E D+ TY T I+   K+ +I    ++   M + GI P+      I+
Sbjct: 276 DAQRIWNDIIASKVERDLFTYGTFINALAKNGRISAAVKLFKKMWETGINPDVAICNCII 335

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                K  + E +E+ GEM    C  DV+ YN +I+  CK   +++   + ++MEA   S
Sbjct: 336 DQLCFKNRIPEALEIFGEMNDRLCQADVATYNTLIKYLCKKKRMEKVYELLDDMEAKGCS 395

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++  ++        +I   +   E  G  L S     T   +LN     +  +  +
Sbjct: 396 PNNRTYSYVLKTTEKPKDVIALMQRM-EQTGCELDS----DTYNLILNLYTNWKYEKGVQ 450

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
            VW  +   G   +  ++TI +H L S G + EA  Y   M    ++P+P T
Sbjct: 451 QVWDEMERNGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRT 502



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 105/209 (50%), Gaps = 4/209 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTS 248
           +  A+++  +M + G  PD  +  C++D LC  + + EA ++F EM +R  +  +  + +
Sbjct: 309 ISAAVKLFKKMWETGINPDVAICNCIIDQLCFKNRIPEALEIFGEMNDRLCQADVATYNT 368

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   CK+ ++ +   +L  M+  G  P+   Y+ +L       K  D   L++ M + G
Sbjct: 369 LIKYLCKKKRMEKVYELLDDMEAKGCSPNNRTYSYVLK---TTEKPKDVIALMQRMEQTG 425

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C+ ++++Y +++      +  +   + + EMER+G   D  ++T ++ G     K+D   
Sbjct: 426 CELDSDTYNLILNLYTNWKYEKGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGKLDEAL 485

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           +   +M  RG++P   T + +   H KK+
Sbjct: 486 QYYTTMKSRGMIPEPRTKILVKAMHMKKD 514


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 220/413 (53%), Gaps = 1/413 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D++KI  +LK  HS    +  AL   GV +   L E+V+ R  +     + ++ WA  Q 
Sbjct: 88  DIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQVLKRFSNDWIPAFGFFKWAKAQT 147

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            Y HS + Y +++  L K++KF  +W L+EEM +     ++      +MRR A A   K 
Sbjct: 148 GYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDR-LGGYVSLATMTKVMRRLARASRWKD 206

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           AIE    M ++G + D      L+DAL K +SV+ A  +F E ++    +   F  L++G
Sbjct: 207 AIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNPHTFNVLIHG 266

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WCK  K+  A   + +MK+ GF PD++ Y +++  Y +         +L EM  KGC PN
Sbjct: 267 WCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPN 326

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT+++ AL + +++ +A   + +M+ S C  D   Y++LI    K+ ++    ++ +
Sbjct: 327 VVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFE 386

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++G +P+ LTY  ++ A     + E+ ++L+ +M +  C PD++ Y+ ++++ C+  
Sbjct: 387 DMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNN 446

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            +K    + N M    +S    ++ ++VHG    G L  AC +F+EMV +GL+
Sbjct: 447 RMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSKGLV 499


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 248/474 (52%), Gaps = 23/474 (4%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S+D + I +IL + H+    +E +LQ +G+ L   L  + + R  +   +   +++WA  
Sbjct: 50  SYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKD 109

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q ++ H    Y  +I  L+K+R+F   W  + EM +   +  T+  F IL+RR  SA + 
Sbjct: 110 QAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLE-PTSTTFRILIRRSVSAGLT 168

Query: 191 KKAIEVLDEMPKY---GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
           ++A+   D+M  +     + D+F +  LLD L K   VK A+++F++ + +F+ + + +T
Sbjct: 169 RQAVRAFDDMSCFVEKDADSDDFCY--LLDTLSKYGYVKLASQIFNQRKFKFEANAKMYT 226

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT----------DA 297
            L+YGWCK  ++  A+ +L +M + G E ++V YN LL+G  +   +           DA
Sbjct: 227 ILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDA 286

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++L EMR+KG +P+  SY+++I    R  K E        M+  G    V TYT+++  
Sbjct: 287 EKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKC 346

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR-KIGCVP 416
            C   +++   E++  M++ G+ P+  TY      +  +++ +  + L  +M+ +  C+P
Sbjct: 347 LCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLP 406

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D+  YN+++ +  KL  ++    +W++M+ +   P  DS+ +++HG   +    EAC +F
Sbjct: 407 DMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFF 466

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVE----MAKDVWSCIVTKGCELNVY 526
            EM+ +G L  PQ  T + L   L+++  ++    + K +    +T G E   Y
Sbjct: 467 VEMIEKGYL--PQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQQY 518


>gi|226495005|ref|NP_001148062.1| GTP binding protein [Zea mays]
 gi|195615570|gb|ACG29615.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 200/371 (53%), Gaps = 4/371 (1%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT-EVFVILMR 182
           ++ WA+  P Y H    Y  ++  L +M+K   +  L +E+ +E+ Q++ T ++F +L+ 
Sbjct: 130 FFNWAATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLN 189

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242
           R+A A  V++AIEV      YG E D   F  LL +LC+   V+EA  LF E ++ F   
Sbjct: 190 RYAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHV 249

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            + +  +L GWC +G L +A+ +   +  +  E D+  +   ++  A+ G+++ A +L K
Sbjct: 250 TKSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFK 309

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M  KG +P+      +I  LC  +K+ EA   F EM    C+ADV TY TLI   CK +
Sbjct: 310 QMWEKGINPDVAICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIK 369

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           ++++ YE+LD M  +G  PN  TY +I+   EK +++   + LM  M + GC  D   YN
Sbjct: 370 RMEKVYELLDDMEAKGCSPNNRTYSYILKTTEKPKDV---IALMQRMERSGCKLDSDMYN 426

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           +++ L  K    K    +W+EME     P   SF +MVHG   QG L EA +Y+  M  R
Sbjct: 427 LILNLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSR 486

Query: 483 GLLSAPQYGTL 493
           G++  P+   L
Sbjct: 487 GMIPEPRTKIL 497



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 164/365 (44%), Gaps = 37/365 (10%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +LD L +   V+   +LFDE+ E  +  +   + F  LL  +    K+ EA  V    KD
Sbjct: 150 MLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKD 209

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN-SYTVLIQALCRMEKME 330
            GFE D+V +  LL    +   + +A  L +E  +K   P+   S+ +++   C    + 
Sbjct: 210 YGFELDLVGFQILLMSLCRYKHVEEAEALFRE--KKDEFPHVTKSWNIILNGWCVKGSLR 267

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A R + ++  S  E D+ T+ T I+   K+ +I    ++   M ++GI P+      I+
Sbjct: 268 DAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVAICNCII 327

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                K+++ E +E+ GEM    C  DV+ YN +I+  CK+  +++   + ++MEA   S
Sbjct: 328 DQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCS 387

Query: 451 PGTDSF-------------VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           P   ++             + ++      GC +++  Y                    +L
Sbjct: 388 PNNRTYSYILKTTEKPKDVIALMQRMERSGCKLDSDMY------------------NLIL 429

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N  ++ +  +  + +W  +  +G   +  ++TI +H L S G + EA  Y   M    ++
Sbjct: 430 NLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMI 489

Query: 558 PQPDT 562
           P+P T
Sbjct: 490 PEPRT 494



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 124/290 (42%), Gaps = 35/290 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           ++ L+ SL + +      AL  E + E P +  T+ + I++  +     ++ A  + +++
Sbjct: 219 FQILLMSLCRYKHVEEAEALFREKKDEFPHV--TKSWNIILNGWCVKGSLRDAQRIWNDI 276

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
                E D F FG  ++AL KN  +  A KLF +M E+   P +     ++   C + K+
Sbjct: 277 IASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVAICNCIIDQLCFKKKI 336

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM--------------- 304
            EA  +  +M D   + D+  YN L+    ++ +M   +ELL +M               
Sbjct: 337 PEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCSPNNRTYSYI 396

Query: 305 -----------------RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
                             R GC  +++ Y +++    + +  +   + + EMER G   D
Sbjct: 397 LKTTEKPKDVIALMQRMERSGCKLDSDMYNLILNLYIKWKYEKGMQQIWDEMERRGSGPD 456

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
             ++T ++ G     K+D   +   +M  RG++P   T +     H KK+
Sbjct: 457 QRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRTKILAKAMHMKKD 506


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 234/453 (51%), Gaps = 13/453 (2%)

Query: 59  NTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG 118
           N++  H   + F  DV+ I  I+ K  S   +++  L+   V     L   V++R  +  
Sbjct: 86  NSSQLHLRDDGFVKDVKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDW 145

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP--QLITTEV 176
              + +++WA KQP Y HS   Y ++I  L KMR+F   WAL+EEMR+ K    ++T + 
Sbjct: 146 EAAFTFFLWAGKQPGYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQT 205

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
            +I++R++ +   V +AI       ++  +   + F  LL ALC+  +V++A  L    +
Sbjct: 206 LLIMIRKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNK 265

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKY---VLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
             F    + F  +L GWC    +V A+    +  +M     + D+V Y +++S Y++  K
Sbjct: 266 NVFPLDTKSFNIILNGWC--NLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSK 323

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +    +L ++M+++   P+   Y  +I +L +   ++EA    ++ME +    D +TY +
Sbjct: 324 LYRVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNS 383

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI   CK+RKID   EI + M++RGI P+  T+         KEE+    EL+ +M+++G
Sbjct: 384 LIKPLCKARKIDEAKEIFNVMLERGISPSIRTFHAFFRILRVKEEV---FELLDKMKELG 440

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C P +  Y ++IR  C+  +L E   +WN M    +     S++V++HG      + EA 
Sbjct: 441 CNPTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAY 500

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
           +Y+ EM  +G L  P+    +++L + L  ++V
Sbjct: 501 KYYIEMQEKGFLPEPK---TESMLQAWLSGRQV 530


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 217/406 (53%), Gaps = 7/406 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  +I    K  +     ++++ M    P ++T   +  ++R    +  +K+A+EVLD 
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRM-SVSPDVVT---YNTILRSLCDSGKLKQAMEVLDR 229

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M +  C PD   +  L++A C++S V +A KL DEMR+R   P +  +  L+ G CKEG+
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA   L  M  +G +P+++ +N +L      G+  DA +LL +M RKG  P+  ++ +
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LCR   +  A     +M + GC+ + ++Y  L+ GFCK +K+DR  E L+ M+ RG
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +TY  ++ A  K  ++E+ VE++ ++   GC P +  YN VI    K G+  +A+
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + +EM A  L P T ++  +V G   +G + EA ++F E    G+   P   T  +++ 
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGV--RPNAVTFNSIML 527

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            L + ++ + A D    ++ +GC+    ++TI I  L   G  KEA
Sbjct: 528 GLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEA 573



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 192/393 (48%), Gaps = 6/393 (1%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +R+      +++  + L+ M  +G  PD      L+   C+    ++AAK+ + +     
Sbjct: 109 LRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGA 168

Query: 241 -PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P +  +  ++ G+CK G++  A  VL +M      PD+V YN +L      GK+  A E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +L  M ++ C P+  +YT+LI+A CR   + +A +   EM   GC  DVVTY  L++G C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  ++D   + L+ M   G  PN +T+  I+ +        +  +L+ +M + G  P V 
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N++I   C+ G L  A+++  +M      P + S+  ++HGF  +  +  A EY + M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V RG    P   T   +L +L +  KVE A ++ + + +KGC   +  +   I  L   G
Sbjct: 406 VSRGCY--PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +A     +M   D+ P   T++ L+ GL +
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 154/348 (44%), Gaps = 34/348 (9%)

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           ++ F  + V  NN L    + G++ + F+ L+ M   G  P+    T LI+  CRM K  
Sbjct: 95  NSSFVLEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTR 154

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCK------------------------------ 360
           +A +    +E SG   DV+TY  +ISG+CK                              
Sbjct: 155 KAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSL 214

Query: 361 --SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
             S K+ +  E+LD M+QR   P+ +TY  ++ A  +   + + ++L+ EMR  GC PDV
Sbjct: 215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDV 274

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YNV++   CK G L EA+   N+M ++   P   +  +++      G  ++A +   +
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ +G   +P   T   L+N L R   +  A D+   +   GC+ N  ++   +H     
Sbjct: 335 MLRKGF--SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKE 392

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +  A  Y   M+     P   T+  ++  L K    + A EI  ++
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 246/474 (51%), Gaps = 23/474 (4%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S+D + I +IL + H+    +E +LQ +G+ L   L  + + R  +   +   +++WA  
Sbjct: 50  SYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKD 109

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q ++ H    Y  +I  L+K+R+F   W  + EM +   +  T+  F IL+RR  SA + 
Sbjct: 110 QAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLE-PTSTTFRILIRRSVSAGLT 168

Query: 191 KKAIEVLDEMPKY---GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
           ++A+   D+M  +     + D+F +  LLD L K   VK A+++F++ + +F+ + + +T
Sbjct: 169 RQAVRAFDDMSCFVEKDADSDDFCY--LLDTLSKYGYVKLASQIFNQRKFKFEANAKMYT 226

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT----------DA 297
            L+YGWCK  ++  A+ +L +M + G   ++V YN LL+G  +   +           DA
Sbjct: 227 ILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDA 286

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++L EMR+ G +P+  SY+++I    R  K E        M+  G    V TYT+++  
Sbjct: 287 EKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKC 346

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR-KIGCVP 416
            C   +++   E++  M++ G+ P+  TY      +  +++ +  + L  +M+ +  C+P
Sbjct: 347 LCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLP 406

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D+  YN+++ +  KL  ++    +W++M+ +   P  DS+ +++HG   +    EAC +F
Sbjct: 407 DMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFF 466

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVE----MAKDVWSCIVTKGCELNVY 526
            EM+ +G L  PQ  T + L   L+++  ++    + K +    +T G E   Y
Sbjct: 467 VEMIEKGYL--PQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQXY 518


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 218/401 (54%), Gaps = 6/401 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           LE  L      L   L   V++R   A     R++ WA+    + H+   Y  ++  L K
Sbjct: 191 LEATLSALSPPLSEALVLAVLDRFKHAHRPSRRFFQWAAASDEFEHTPVTYCKMLHILGK 250

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
            R+F  + AL++EM K     +  + F I ++ FA+A  +K A+ V + M  +G +    
Sbjct: 251 ARQFETMVALVQEMGKAG--ALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRVHGFDDGVE 308

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            F CLL AL +    KEAA++FD MR+++ P LR +T+L+  WC    LVEA  V   M 
Sbjct: 309 SFNCLLVALAQEGLGKEAARVFDRMRDQYTPDLRSYTALMLAWCNARNLVEAGRVWNDML 368

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           + G +PD+VV+N ++ G  +  +  +A ++ + M+ KG  PN  +YT+LI+  C+  K++
Sbjct: 369 EKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLD 428

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
            A R F EM+ +GC+ +V TYT L+ G+  ++++DR   +L+ M Q+G  P+  TY  ++
Sbjct: 429 MAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALI 488

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN--VWNEMEAAS 448
                +   ++ V +  +M   G  P +  YN++++ +  LG    A+   VW EM    
Sbjct: 489 KLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMK-SYFLGGRNYAMGCAVWEEMHRKG 547

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           + P  +S+ V ++G +  G   EAC++ +EM+ +G + APQ
Sbjct: 548 ICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKG-MKAPQ 587



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 38/281 (13%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM  + +AR + +A  V ++M + G +PD  V   ++D L +     EA K+F+ M+
Sbjct: 344 YTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMK 403

Query: 237 ERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +  P ++  +T L+   CK+GKL  A     +M+ AG +P++  Y  LL GY    +M 
Sbjct: 404 AKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMD 463

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------ 337
               +L+EM +KGC P+  +Y  LI+ L      ++A R +                   
Sbjct: 464 RVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMM 523

Query: 338 ------------------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                             EM R G   DV +YT  I+G  +  +     + L+ MIQ+G+
Sbjct: 524 KSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGM 583

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              Q+ Y        K  + +   EL  +++  G   DVSN
Sbjct: 584 KAPQIDYNKFAADFSKAGKPDILYELAQKVKFTGKF-DVSN 623



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 91/212 (42%), Gaps = 2/212 (0%)

Query: 161 MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           M E+ K K        + +L+R       +  A+   +EM   GC+P+   + CLL    
Sbjct: 398 MFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYG 457

Query: 221 KNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
               +     + +EM ++   P  R + +L+          +A  +  +M   G EP I 
Sbjct: 458 NAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIH 517

Query: 280 VYNNLLSGYAQMGK-MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
            YN ++  Y   G+       + +EM RKG  P+ NSYTV I    R  +  EA +   E
Sbjct: 518 TYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEE 577

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           M + G +A  + Y    + F K+ K D  YE+
Sbjct: 578 MIQKGMKAPQIDYNKFAADFSKAGKPDILYEL 609


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 233/475 (49%), Gaps = 18/475 (3%)

Query: 20  FAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFR 79
           F P P  T +  +   +     +S   C      +   NN     G + EF   V +I  
Sbjct: 37  FWPSPTQTRTPTQPLPSAPTLFSSLRYCSNNVNGNSDTNN-----GENGEF---VRRIVD 88

Query: 80  ILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYD 139
           IL++  S +  ++  L+  GV     L   V++R  +     + +++WA+KQP Y HS  
Sbjct: 89  ILQEPGSSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPGYAHSLR 148

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ++I  L KMRKF   WAL++EMR  +    L+T     I++RR+ +   V KAI   
Sbjct: 149 AYHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGKAINTF 208

Query: 198 --DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255
              +  K+G   +EF    LL ALC+  +V++A +L    R  F    + F  +L GWC 
Sbjct: 209 YAHKQFKFGVGIEEF--QNLLSALCRYKNVQDAEQLLFCNRNVFPFDTKSFNIILNGWCN 266

Query: 256 E-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             G + EA+    +M + G + D+V Y++++S Y+++  +    +L  +M+     P+  
Sbjct: 267 VIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRK 326

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            Y  ++ AL +   ++EA      ME  G   D VTY +LI    ++RKI+   E+ D M
Sbjct: 327 VYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEM 386

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           +QRG+ P   TY H      K    EE   L+ +M++ GC PD   Y ++IR  C+  +L
Sbjct: 387 LQRGLSPTIRTY-HAFFRILKSG--EEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQL 443

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
                +W+EM    + P   S++V++HG    G L EA +Y+ EM  +  L  P+
Sbjct: 444 DNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPK 498



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 163/362 (45%), Gaps = 23/362 (6%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSL---RHFTSLLYGWC---KEGKLVEAKY 264
           +  ++  L K      A  L DEMR  R   SL      + ++  +C     GK +   Y
Sbjct: 150 YHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGKAINTFY 209

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
              Q K   F   I  + NLLS   +   + DA +LL    R     +  S+ +++   C
Sbjct: 210 AHKQFK---FGVGIEEFQNLLSALCRYKNVQDAEQLLF-CNRNVFPFDTKSFNIILNGWC 265

Query: 325 R-MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
             +  M EA R + EM   G + DVV+Y+++IS + K   +++  ++ + M +  I P++
Sbjct: 266 NVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDR 325

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
             Y  ++ A  K   ++E + LM  M   G  PD   YN +I+   +  ++ EA  V++E
Sbjct: 326 KVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDE 385

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF---KEMVGRGLLSAPQYGTLKALLNSL 500
           M    LSP   ++    H F     L    E F   ++M   G    P   T   L+   
Sbjct: 386 MLQRGLSPTIRTY----HAFFR--ILKSGEEVFMLLEKMKETG--CHPDKDTYIMLIRRF 437

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            R ++++    +WS +   G   +  ++ + IH LF NG ++EA  Y ++M +   +P+P
Sbjct: 438 CRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEP 497

Query: 561 DT 562
            T
Sbjct: 498 KT 499



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 4/197 (2%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + K +++ ++M +    PD  V+  ++ AL K S VKEA  L   M  +   P    + S
Sbjct: 306 LNKVLKLFNQMKEMEIAPDRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNS 365

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+    +  K+ EAK V  +M   G  P I  Y+     +  +    + F LL++M+  G
Sbjct: 366 LIKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAF---FRILKSGEEVFMLLEKMKETG 422

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+ ++Y +LI+  CR  +++   + + EM  +G   D  +Y  LI G   + K++  Y
Sbjct: 423 CHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAY 482

Query: 369 EILDSMIQRGILPNQLT 385
           +    M ++  LP   T
Sbjct: 483 KYYIEMKEKQFLPEPKT 499



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 33/178 (18%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           +V+  ++   A A  VK+A+ ++  M   G  PD   +  L+  L +   + EA ++FDE
Sbjct: 326 KVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDE 385

Query: 235 MRER-FKPSLRHFTS--------------------------------LLYGWCKEGKLVE 261
           M +R   P++R + +                                L+  +C+  +L  
Sbjct: 386 MLQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDN 445

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
              +  +M + G  PD   Y  L+ G    GK+ +A++   EM+ K   P   +  +L
Sbjct: 446 VFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPKTEDML 503


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 213/432 (49%), Gaps = 30/432 (6%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S  + +I RIL  F      LE  L      + PGL E+V+ RC    NLG+  +  +SK
Sbjct: 47  SQYINEISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCK---NLGFSAH--SSK 101

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q                      F  +W  + +MR+ +   I  E+F ++ R +  A + 
Sbjct: 102 Q----------------------FPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLP 139

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
             AI    +M  +G +        LL  LCK   VK+A + FD++     P+ + ++ L+
Sbjct: 140 GDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILM 199

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            GW   G   EA+ +  +M++ G   D+V YN+LL    + G + +A++L +EM   G  
Sbjct: 200 RGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLA 259

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+A SY++ I+A C +  +  A +    M R     +V TY  ++   CKS K+D  Y++
Sbjct: 260 PDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQL 319

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD MI+RG+ P+  +Y  I   H    E+ + + L+  M K  C+PD   YN+V+++  +
Sbjct: 320 LDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLR 379

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQ 489
           +G      +VW  ME     P   ++ VMVHGF   +G L EAC+YF+ M+  G+   P 
Sbjct: 380 VGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGI--PPY 437

Query: 490 YGTLKALLNSLL 501
             T++ L N ++
Sbjct: 438 SCTVELLRNRVI 449


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/432 (31%), Positives = 223/432 (51%), Gaps = 10/432 (2%)

Query: 73  DVEKIFRILK-KFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ 131
           DVEKI   LK + HS    +  AL  SG  +   L  +V+ R G+     Y +++WA KQ
Sbjct: 145 DVEKISTFLKEQRHSSHDHVVQALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQ 204

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
             YVHS +VY  ++  L K ++F  +W L++EM++ +   +  +    +MRRFA A+  +
Sbjct: 205 TPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKRIE-GYVCLDTMSKVMRRFAKAQRHE 263

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251
            A+E    M KYG E D      LLDAL K  S++ A  + DE +     S   F  L+ 
Sbjct: 264 DAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKSSVPLSSPSFNILIN 323

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           GWCK     +A+ V+ + K+ GFEPD+  YNN +  Y          E+L+EMR  GC P
Sbjct: 324 GWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPP 383

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           NA +YT+L+    +  ++ +A   +  M++ G   D   Y++L+    K+ ++    E+ 
Sbjct: 384 NAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVF 443

Query: 372 DSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           D M ++G++ + +TY   +    AH K+   E  + L+ EM +  C PD+  Y+ ++++ 
Sbjct: 444 DDMPKQGVVRDVVTYNTMISTACAHSKE---ETALRLLKEMEETSCKPDLQTYHPLLKMC 500

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   +K    + + M    L P   ++ ++V      G L+EAC +F+EMV +G    P
Sbjct: 501 CKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEEMVSKGF--TP 558

Query: 489 QYGTLKALLNSL 500
              T+K L   L
Sbjct: 559 METTVKLLTRKL 570



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 16/280 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +  LI    K+R F     +MEE RKE   +P + T   F+     +   +  +K  EVL
Sbjct: 318 FNILINGWCKVRNFEKARKVMEE-RKEHGFEPDVFTYNNFI---ESYCHDKDFRKVDEVL 373

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
           +EM   GC P+   +  LL    K   + +A + ++ M+ +   P    ++SL+Y   K 
Sbjct: 374 EEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKA 433

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+L +A  V   M   G   D+V YN ++S      K   A  LLKEM    C P+  +Y
Sbjct: 434 GRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCKPDLQTY 493

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L++  C+ ++M+        M +     D  TYT L+     S K+       + M+ 
Sbjct: 494 HPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEEMVS 553

Query: 377 RGILPNQLTY------LHIMLAHEKKEELEECV--ELMGE 408
           +G  P + T       L I    ++K+++EE +   ++GE
Sbjct: 554 KGFTPMETTVKLLTRKLEIKSMLKEKDQIEELMAGHVLGE 593



 Score = 38.9 bits (89), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 100/247 (40%), Gaps = 7/247 (2%)

Query: 351 YTTLISGFCKSRKIDRCYEILDSM--IQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           Y  ++    K+++ D  ++++  M  I+  +  + ++   +M    K +  E+ VE    
Sbjct: 214 YNLMVDILGKAKEFDLMWKLVKEMKRIEGYVCLDTMS--KVMRRFAKAQRHEDAVEAFRG 271

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M K G   D +  N ++    K   ++ A NV +E ++ S+   + SF ++++G+     
Sbjct: 272 MGKYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKS-SVPLSSPSFNILINGWCKVRN 330

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
             +A +  +E    G    P   T    + S    +      +V   +   GC  N   +
Sbjct: 331 FEKARKVMEERKEHGF--EPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTY 388

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           TI +      G + +A      M    ++P    ++ LM  L K    + A E+ + + K
Sbjct: 389 TILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPK 448

Query: 589 MAAERQI 595
               R +
Sbjct: 449 QGVVRDV 455


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 215/429 (50%), Gaps = 6/429 (1%)

Query: 64  HGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYR 123
           H   +  + DV+ I  I+ +  S   +++  L+H  +VL P L   V++R  +     + 
Sbjct: 118 HLRDDGLAKDVKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFT 177

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILM 181
           +++WA KQP Y HS   Y ++I  L KMRKF   W L+EEMR  +    L+T +  +I++
Sbjct: 178 FFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMI 237

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP 241
           R++ +   V +AI       ++        F  LL ALC+  +V++A  L    ++ F  
Sbjct: 238 RKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPL 297

Query: 242 SLRHFTSLLYGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
             + F  +L GWC        A+ +  +M     + D+V Y +++S Y++  K+     +
Sbjct: 298 DTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRM 357

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             EM+++   P+   Y  +I AL +   ++EA      ME +    DVVTY +LI   CK
Sbjct: 358 FDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCK 417

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           + K+D   ++ D M++R + P   T+         KEE+    EL+ +M+++ C P +  
Sbjct: 418 AHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEEV---FELLDKMKELRCYPTIET 474

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y ++IR  C+  +L +   +W+ M    +S    S++V++HG    G L EA  Y+ EM 
Sbjct: 475 YIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQ 534

Query: 481 GRGLLSAPQ 489
            +G L  P+
Sbjct: 535 EKGFLPEPK 543



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           ++ +  + K + + DEM K    PD  V+  ++ AL K   VKEA  L   M      P 
Sbjct: 345 YSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPD 404

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  + SL+   CK  K+ EAK +  +M      P I  ++     +  +    + FELL 
Sbjct: 405 VVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAF---FRILRTKEEVFELLD 461

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M+   C P   +Y +LI+  CR  ++++  + +  M       D  +Y  LI G   + 
Sbjct: 462 KMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNG 521

Query: 363 KIDRCYEILDSMIQRGILPNQLT 385
           K++        M ++G LP   T
Sbjct: 522 KLEEAQRYYAEMQEKGFLPEPKT 544



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 41/249 (16%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE--VFVILMRRFASARMVKKA 193
           H    Y ++I   SK  K   V  + +EM+K K   IT +  V+  ++   A  R+VK+A
Sbjct: 333 HDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRK---ITPDRKVYNAVIYALAKGRLVKEA 389

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER------------FK- 240
           + ++  M      PD   +  L+  LCK   V EA +LFDEM +R            F+ 
Sbjct: 390 VNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRI 449

Query: 241 --------------------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
                               P++  +  L+  +C+  +L +   +   M++     D   
Sbjct: 450 LRTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSS 509

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y  L+ G    GK+ +A     EM+ KG  P   +  +L QA    ++  E      ++E
Sbjct: 510 YIVLIHGLFLNGKLEEAQRYYAEMQEKGFLPEPKTEEML-QAWVSGKQATEGQEK--DLE 566

Query: 341 RSGCEADVV 349
            S  E D +
Sbjct: 567 PSQLENDTL 575


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 223/431 (51%), Gaps = 11/431 (2%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           + M   +Q   V     Y  LI    K  +      +++ M    P ++T   +  ++R 
Sbjct: 170 WVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM-NVAPDVVT---YNTILRT 225

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
              +  +K+A+EVLD   +  C PD   +  L++A CK S V +A KL DEMR +  KP 
Sbjct: 226 LCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 285

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +  L+ G CKEG+L EA   L  M   G +P+++ +N +L      G+  DA +LL 
Sbjct: 286 VVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLS 345

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M RKGC P+  ++ +LI  LCR   +  A     +M   GC  + ++Y  L+ GFCK +
Sbjct: 346 DMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK 405

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K+DR  E LD M+ RG  P+ +TY  ++ A  K  +++  VE++ ++   GC P +  YN
Sbjct: 406 KMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYN 465

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            VI    K+G+ + A+ + +EM    L P   ++  +V G   +G + EA ++F ++ G 
Sbjct: 466 TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 525

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+   P   T  +++  L ++++ + A D  + +++K C+     +TI I  +   G  K
Sbjct: 526 GI--RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 583

Query: 543 EACSYCLDMMD 553
           EA    LD+++
Sbjct: 584 EA----LDLLN 590



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 187/387 (48%), Gaps = 35/387 (9%)

Query: 219 LCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
           L +N  +++  K  + M  R   P +   TSL+ G+C+ GK  +A +V+  ++ +G  PD
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMR-------------------------------- 305
           ++ YN L+SGY + G++ +A ++L  M                                 
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           +K C P+  +YT+LI+A C+   + +A +   EM   G + DVVTY  LI+G CK  ++D
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              + L++M   G  PN +T+  I+ +        +  +L+ +M + GC P V  +N++I
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+ G L  A+++  +M     +P + S+  ++HGF  +  +  A EY   MV RG  
Sbjct: 364 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-- 421

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T   LL +L +  KV++A ++ + + +KGC   +  +   I  L   G  + A 
Sbjct: 422 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI 481

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
               +M    + P   T++ L+ GL +
Sbjct: 482 KLLDEMRRKGLKPDIITYSSLVSGLSR 508



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 177/348 (50%), Gaps = 6/348 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI++  K    G    L++EMR +  KP ++T   + +L+        + +AI+ L+
Sbjct: 254 YTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVT---YNVLINGICKEGRLDEAIKFLN 310

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            MP YGC+P+      +L ++C      +A KL  +M R+   PS+  F  L+   C++G
Sbjct: 311 NMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 370

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  +L +M   G  P+ + YN LL G+ +  KM  A E L  M  +GC P+  +Y 
Sbjct: 371 LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYN 430

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALC+  K++ A     ++   GC   ++TY T+I G  K  K +R  ++LD M ++
Sbjct: 431 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 490

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++    ++ +++E ++   ++  +G  P+   YN ++   CK  +   A
Sbjct: 491 GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 550

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           ++    M +    P   ++ +++ G   +G   EA +   E+  RGL+
Sbjct: 551 IDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLV 598



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 157/300 (52%), Gaps = 10/300 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN +     +  +++S+    ++     L+ +M ++   P ++T   F IL+       
Sbjct: 318 QPNVI----THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT---FNILINFLCRQG 370

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           ++ +AI++L++MP +GC P+   +  LL   CK   +  A +  D M  R   P +  + 
Sbjct: 371 LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYN 430

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +LL   CK+GK+  A  +L Q+   G  P ++ YN ++ G +++GK   A +LL EMRRK
Sbjct: 431 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 490

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y+ L+  L R  K++EA + F ++E  G   + +TY +++ G CKSR+ DR 
Sbjct: 491 GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 550

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            + L  MI +   P + TY  ++     +   +E ++L+ E+   G V   S   V +++
Sbjct: 551 IDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 610



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 34/336 (10%)

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           N L    + G++ D F+ L+ M  +G  P+    T LI+  CR+ K ++A      +E+S
Sbjct: 119 NHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS 178

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSM---------------------------- 374
           G   DV+TY  LISG+CKS +ID   ++LD M                            
Sbjct: 179 GAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEV 238

Query: 375 ----IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
               +Q+   P+ +TY  ++ A  K+  + + ++L+ EMR  G  PDV  YNV+I   CK
Sbjct: 239 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 298

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G L EA+   N M +    P   +  +++      G  ++A +   +M+ +G   +P  
Sbjct: 299 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG--CSPSV 356

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   L+N L R   +  A D+   +   GC  N  ++   +H       +  A  Y   
Sbjct: 357 VTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDI 416

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           M+     P   T+  L+  L K     +A EI  ++
Sbjct: 417 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 452


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 212/430 (49%), Gaps = 5/430 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V +I R+L    +    LE  L      +   L E+V+ RC + G   +R+++WA + P+
Sbjct: 38  VNEISRVLSDHRNPKDDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWAKRIPD 97

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + HS + Y  L++ L   ++F  +W  + E R+     IT++VF I+ R ++ A +  +A
Sbjct: 98  FEHSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANLPSEA 157

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
               + M ++G +P       LL +LC    V  A + FD+ +     PS + ++ L+ G
Sbjct: 158 SRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAKTYSILVRG 217

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           W +      A+ V  +M +     D++ YN LL    + G +  A+++ +EM   G  P+
Sbjct: 218 WARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEMGNLGLKPD 277

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A S+ + I + C    +  A +    M+R     +V T+  +I   CK+ K+D  Y +LD
Sbjct: 278 AYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLD 337

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MIQ+G  P+  TY  IM  H    E+    +L+  M +  C+PD   YN+V++L  ++G
Sbjct: 338 EMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIG 397

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQYG 491
                  +W  M      P   ++ VM+HG +  +G L EAC YF+ M+  G+   P Y 
Sbjct: 398 RFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGI---PPYS 454

Query: 492 TLKALLNSLL 501
           T   +L + L
Sbjct: 455 TTVEMLRNRL 464



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/320 (17%), Positives = 110/320 (34%), Gaps = 73/320 (22%)

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPN 312
           CK       ++ L   +   FE  +  Y+ L+       +    ++ L E R     +  
Sbjct: 78  CKNLGFPAHRFFLWAKRIPDFEHSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEIT 137

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           +  + ++ +A  R     EA+RAF  M   G +  V     L+   C  + ++   E  D
Sbjct: 138 SKVFWIVFRAYSRANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFD 197

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
                                              + +  G VP    Y++++R   ++ 
Sbjct: 198 -----------------------------------KAKGFGIVPSAKTYSILVRGWARIR 222

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +   A  V++EM                   L   C+++   Y                 
Sbjct: 223 DASGARKVFDEM-------------------LENNCVVDLLAY----------------- 246

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             ALL++L ++  V+ A  ++  +   G + + Y++ I+IHS      V  A      M 
Sbjct: 247 -NALLDALCKSGDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMK 305

Query: 553 DADVMPQPDTFAKLMRGLKK 572
             D++P   TF  +++ L K
Sbjct: 306 RYDLVPNVYTFNHIIKTLCK 325


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/404 (31%), Positives = 216/404 (53%), Gaps = 8/404 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK----QPNYVHSYDVYRALIK 146
           LE AL      L   L   V++R   A    +R++ WA+        + H+   Y  ++ 
Sbjct: 170 LEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVH 229

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            L K R+F ++ AL++EM KE    +  + F I ++ FA+A  +K A+ V + M  +G +
Sbjct: 230 ILGKARQFQSMVALIQEMGKEG--ALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFD 287

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
                F CLL AL +    +EA ++FD MR+R+ P LR +T+L+  WC    LVEA  V 
Sbjct: 288 DGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVW 347

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M + G +PD+VV+N ++ G  +  +  +A ++ + M+ KG  PN  +YT+LI+  C+ 
Sbjct: 348 NEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKR 407

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            KM+ A R F EM+  GC+ DV TYT L+ G+  ++++DR   +L+ M Q+G  P+  TY
Sbjct: 408 GKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTY 467

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-ELKEAVNVWNEME 445
             ++     +   ++   +  +M K G  P +  YN++++     G        VW EM 
Sbjct: 468 NALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMH 527

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
              + P  +S+ V ++G +  G   EAC+Y +EM+ +G +  PQ
Sbjct: 528 RKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKG-MKTPQ 570



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 177/408 (43%), Gaps = 7/408 (1%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  L K    +    L  EM +     +  F   +  +   G++  A  V   M+  GF
Sbjct: 227 MVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGF 286

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +  +  +N LL   AQ G   +A ++   MR +   P+  SYT L+ A C    + EA R
Sbjct: 287 DDGVESFNCLLVALAQEGLGREANQVFDRMRDRYA-PDLRSYTALMLAWCNARNLVEAGR 345

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            + EM  +G + DVV + T+I G  + ++     ++ + M  +G  PN  TY  ++  H 
Sbjct: 346 VWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHC 405

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+ +++  +    EM+ +GC PDV+ Y  ++        +     +  EM      P   
Sbjct: 406 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 465

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS-LLRAQKVEMAKDVW 513
           ++  ++     +    +A   +K+M+ +GL   P   T   ++ S  L  +   M   VW
Sbjct: 466 TYNALIKLLTNRNMPDDAARIYKKMIKKGL--EPTIHTYNMMMKSYFLGGRNYMMGCAVW 523

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQPDTFAKLMRGLKK 572
             +  KG   +V ++T++I+    +G  +EAC Y  +M+   +  PQ D + K      K
Sbjct: 524 EEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQID-YNKFAADFSK 582

Query: 573 LYNRQIAAEITEKVRKMAA-ERQITFKMYKRRGERDLKEKAKKQVDGR 619
                I  E+ +KV+     +    F  +  R ++ +K     Q + R
Sbjct: 583 AGKPDILYELAQKVKFTGKFDASNVFHQWAERMKKRVKRNVPNQTESR 630



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM  + +AR + +A  V +EM + G +PD  V   +++ L +     EA K+F+ M+
Sbjct: 327 YTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMK 386

Query: 237 ERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P++  +T L+   CK GK+  A     +M+D G +PD+  Y  LL GY    +M 
Sbjct: 387 AKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMD 446

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------ 337
               LL+EM +KGC P+  +Y  LI+ L      ++A R +                   
Sbjct: 447 RVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMM 506

Query: 338 ------------------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                             EM R G   DV +YT  I+G  +  + +   + ++ MIQ+G+
Sbjct: 507 KSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGM 566

Query: 380 LPNQLTY 386
              Q+ Y
Sbjct: 567 KTPQIDY 573



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 3/233 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V+  +I+ L + ++      + E M+ + P       + +L+R       +  A+   +E
Sbjct: 361 VHNTMIEGLLRGQRRPEAVKMFELMKAKGPA-PNVWTYTMLIRDHCKRGKMDMAMRCFEE 419

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M   GC+PD   + CLL        +     L +EM ++   P  R + +L+        
Sbjct: 420 MQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNM 479

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK-MTDAFELLKEMRRKGCDPNANSYT 317
             +A  +  +M   G EP I  YN ++  Y   G+       + +EM RKG  P+ NSYT
Sbjct: 480 PDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYT 539

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           V I    R  + EEA +   EM + G +   + Y    + F K+ K D  YE+
Sbjct: 540 VFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYEL 592


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 170/606 (28%), Positives = 289/606 (47%), Gaps = 68/606 (11%)

Query: 65   GSHNEFSHDVEKIFRILKKFHSRLP--KLELALQHSGVVLRPGLTERVIN--RCGDAGNL 120
             +   F H   KI RIL   +SR      E AL+     L   +  +V+   R GDA  L
Sbjct: 776  ATQGGFHH---KIVRIL---NSRFAWEYAETALERFTGKLTTTVVGKVLQGVRNGDAA-L 828

Query: 121  GYRYYMWASKQPNYVH--------------------SYDVYR-------------ALIKS 147
            G+  + WA+ Q  Y H                    +  VYR              LI  
Sbjct: 829  GF--FDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCCSPNMFTFTILIHG 886

Query: 148  LSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG-C 205
            L +    G  + L++EM R   PQ +     VI  +   SAR +  A+E+  EM + G C
Sbjct: 887  LCRAGDIGTAYELLKEMPRHGVPQNVILHNVVI--KGLCSARKLDSALELFKEMEESGSC 944

Query: 206  EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
             PD F +  ++D+L K+  V +A +L ++M  +   P++  ++SLL+G CK GKL EA  
Sbjct: 945  PPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 1004

Query: 265  VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
            +L +M  +G  P+IV YN ++ G+ ++G++ +A+ LL+EM   GC PN  +YTVL+ A C
Sbjct: 1005 LLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC 1064

Query: 325  RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
            +  K E+A      M   G   ++ TY +L+  FCK  +++R  ++L SMIQ+G +PN +
Sbjct: 1065 KCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVV 1124

Query: 385  TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
            +Y  ++    K  ++ E V L+ +M    CVPD+  +N +I   CK   +  A  ++N +
Sbjct: 1125 SYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLI 1184

Query: 445  EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
            + +  +P   ++  +VHG L +    +  EY    + R    +P   T   +++ L +++
Sbjct: 1185 QESGCTPNLVTYNSLVHG-LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSK 1243

Query: 505  KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
            +V+ A  ++  +++ G   +   ++I I SL     + EA +    M+     P   T+ 
Sbjct: 1244 RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYG 1303

Query: 565  KLMRGLKKLYNRQIAAEITE-KVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRA 623
             L+ G  K  N   A EI +  + K +    +TF ++               +D   +R 
Sbjct: 1304 TLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIF---------------IDWLSKRG 1348

Query: 624  RQRRWG 629
            R R+ G
Sbjct: 1349 RLRQAG 1354



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/498 (26%), Positives = 236/498 (47%), Gaps = 4/498 (0%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           L +AL      L P +  +V+ R  D G     ++ WA  +  Y H       L+  L K
Sbjct: 80  LRVALDEYRGQLSPEIVGKVLQRLIDPGA-ALVFFEWAETRDGYQHEIFCCNCLLNVLVK 138

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
             ++     L    R E      T  +  L+  F  A  +  A E+ DEM + G +    
Sbjct: 139 AHQYSQAHDLFRS-RIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAG 197

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           V   +L  LC      +A   F EM +   P    + +++ G  K  +L +A  +L +M 
Sbjct: 198 VHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMV 257

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           D GF P++  YN +L G+ +  ++ +A  LL++M  +GC P+  SYT +I  LC++++++
Sbjct: 258 DNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVD 317

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA R   +M + GC+ +V+TY TL+ GFC+   +D   E++  M +RG  PN +TY +IM
Sbjct: 318 EACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIM 377

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               ++ ++E   +++  M + GC PD  NY+ +I   CK G+L+EA ++  +M      
Sbjct: 378 HVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCR 437

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P       ++        +  A E  +  +  G+  AP       L+++L +A+++  A+
Sbjct: 438 PDVACLSTLIDALCKAAAIDSAQELLRMSI--GMDCAPDVVAYSILIHALCKAKRLPEAE 495

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
                +V   C  +V  +   +  L  +  + +A      M  A VMP   T++ ++   
Sbjct: 496 SWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSF 555

Query: 571 KKLYNRQIAAEITEKVRK 588
            K  N   A ++ E++++
Sbjct: 556 CKDNNLDSAFKMLERMKE 573



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 224/450 (49%), Gaps = 10/450 (2%)

Query: 141 YRALIKSLSKMRKF-GAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  ++    K  +   A+W L+E+M  R   P +++   +  ++        V +A  V+
Sbjct: 268 YNTVLHGFCKANRVENALW-LLEQMVTRGCPPDVVS---YTTVINGLCKLDQVDEACRVM 323

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           D+M + GC+P+   +G L+D  C+   +  A +L  +M ER ++P+   + ++++ +C+ 
Sbjct: 324 DKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRR 383

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             +  A  VL  M   G  PD + Y+ ++SG+ + GK+ +A +LL++M R+GC P+    
Sbjct: 384 NDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACL 443

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI ALC+   ++ A           C  DVV Y+ LI   CK++++      LD M++
Sbjct: 444 STLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVK 503

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
               P+ +TY  ++    K   + +   L   MR  G +PDV  Y++VI   CK   L  
Sbjct: 504 NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDS 563

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +   M+ A   P   ++  +++G    G + +A + F+EM+G G   AP   T   L
Sbjct: 564 AFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCG--CAPNLVTYNTL 621

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++ L +  KVE A ++   +  + C  +   +T  I+ L +   ++EA     +M D   
Sbjct: 622 IDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGC 681

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +P   T+  L+R L+K  N ++  ++ +++
Sbjct: 682 LPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 173/334 (51%), Gaps = 7/334 (2%)

Query: 131  QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
            +  YV +   Y +L+    K  +      L+  M ++   P +++   +  ++     A 
Sbjct: 1081 EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS---YNTVIAGLCKAT 1137

Query: 189  MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             V + + +L++M    C PD   F  ++DA+CK   V  A +LF+ ++E    P+L  + 
Sbjct: 1138 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 1197

Query: 248  SLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            SL++G CK  +  +A+Y+L +M +  G  PDI+ YN ++ G  +  ++  A++L  +M  
Sbjct: 1198 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 1257

Query: 307  KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
             G  P+  +Y+++I +LC+   M+EAN     M ++G +   +TY TLI GFCK+  +D+
Sbjct: 1258 DGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDK 1317

Query: 367  CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              EIL  ++ +G  P+ +T+   +    K+  L +  EL+  M + G VPD   YN +++
Sbjct: 1318 ALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLK 1377

Query: 427  LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
              C     ++AV+++  M      P   ++  +V
Sbjct: 1378 GFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 193/399 (48%), Gaps = 14/399 (3%)

Query: 131  QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
            QPN V     Y  L+ +  K  K      L+E M ++   P L T   +  L+  F    
Sbjct: 1050 QPNVV----TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT---YNSLLDMFCKKD 1102

Query: 189  MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
             V++A ++L  M + GC P+   +  ++  LCK + V E   L ++M      P +  F 
Sbjct: 1103 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 1162

Query: 248  SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            +++   CK  ++  A  +   ++++G  P++V YN+L+ G  +  +   A  LL+EM RK
Sbjct: 1163 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRK 1222

Query: 308  -GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
             GC P+  +Y  +I  LC+ ++++ A + F++M   G   D VTY+ +IS  CK R +D 
Sbjct: 1223 QGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDE 1282

Query: 367  CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
               +L+ M++ G  P  +TY  ++    K   L++ +E++  +   G  PDV  +++ I 
Sbjct: 1283 ANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFID 1342

Query: 427  LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
               K G L++A  +   M  A L P T ++  ++ GF       +A + F+ M  R    
Sbjct: 1343 WLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVM--RQCGC 1400

Query: 487  APQYGTLKALLNSLLRAQKV-EMAKDVWSCIVTKGCELN 524
             P   T   L+  L+  +   ++  +V   +V  G +LN
Sbjct: 1401 EPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLN 1439



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 6/309 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I    K  K      L+E+M  R  +P +        L+     A  +  A E+L 
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDV---ACLSTLIDALCKAAAIDSAQELLR 464

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
                 C PD   +  L+ ALCK   + EA    D M + R  P +  + S++ G CK  
Sbjct: 465 MSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSR 524

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A  +  +M+ AG  PD+V Y+ ++  + +   +  AF++L+ M+   C P+  +Y+
Sbjct: 525 RINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYS 584

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC+   +++A   F EM   GC  ++VTY TLI G CK  K+++  E+L+ M ++
Sbjct: 585 ALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQ 644

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
              P+ +TY  ++        LEE   ++ EM+  GC+PD   Y  ++R   K   L+  
Sbjct: 645 SCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELV 704

Query: 438 VNVWNEMEA 446
             +  EMEA
Sbjct: 705 EQLLKEMEA 713



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 64/371 (17%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  +I SL K R       ++E M K    P  IT   +  L+  F     + KA+E+L 
Sbjct: 1267 YSIVISSLCKWRFMDEANNVLELMLKNGFDPGAIT---YGTLIDGFCKTGNLDKALEILQ 1323

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
             +   G  PD   F   +D L K   +++A +L + M R    P    + +LL G+C   
Sbjct: 1324 LLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDAS 1383

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY----------AQMGK-MTD-AFELLKEMR 305
               +A  +   M+  G EPD   Y  L+             A++ K M D  F+L  E+ 
Sbjct: 1384 LTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELS 1443

Query: 306  RK-------------GC----------DP-------------NANSYTVLIQALCRMEKM 329
             K             GC           P             N   ++ ++      ++ 
Sbjct: 1444 SKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQE 1503

Query: 330  EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLH 388
            E+A   +  M   G E D VT+ +L++  C +  +D   +   S+ +  G+ P    +  
Sbjct: 1504 EQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSC 1563

Query: 389  IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
            ++    +   + E  +LM  M    C P  + +N ++      G+ + A+ V      A 
Sbjct: 1564 VIDLLGRLGLVNEAEDLMLGMP---CKPSAATWNCLLSAYKICGDFERALRV------AE 1614

Query: 449  LSPGTDSFVVM 459
            L+P   S++++
Sbjct: 1615 LNPTQASYLLL 1625


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 220/442 (49%), Gaps = 14/442 (3%)

Query: 67  HNEFSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRP----GLTERVINRCGDAGNLG 121
           H+  S D V +I R+L     R PK +L  +H+ V   P     L E+V+ RC + G   
Sbjct: 30  HDPPSPDLVNEISRVLSD--HRNPKDDL--EHTLVAYSPRVSSNLVEQVLKRCKNLGFPA 85

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           +R+++WA + P++ HS + Y  L++ L   ++F  +W  + E R+     I+++VF I+ 
Sbjct: 86  HRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVF 145

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFK 240
           R ++ A +  +A    + M ++G +P       LL +LC    V  A + F + +     
Sbjct: 146 RAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIV 205

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           PS + ++ L+ GW +      A+ V  +M +     D++ YN LL    + G +   +++
Sbjct: 206 PSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKM 265

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            +EM   G  P+A S+ + I A C    +  A +    M+R     +V T+  +I   CK
Sbjct: 266 FQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCK 325

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           + K+D  Y +LD MIQ+G  P+  TY  IM  H    E+    +L+  M +  C+PD   
Sbjct: 326 NEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHT 385

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEM 479
           YN+V++L  ++G    A  +W  M      P   ++ VM+HG +  +G L EAC YF+ M
Sbjct: 386 YNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMM 445

Query: 480 VGRGLLSAPQYGTLKALLNSLL 501
           +  G+   P Y T   +L + L
Sbjct: 446 IDEGI---PPYSTTVEMLRNRL 464



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 7/182 (3%)

Query: 116 DAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
           DAG++   Y +    K+ + V +   +  +IK+L K  K    + L++EM  +K     T
Sbjct: 290 DAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEM-IQKGANPDT 348

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
             +  +M        V +A ++L  M +  C PD   +  +L  L +      A ++++ 
Sbjct: 349 WTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEG 408

Query: 235 MRER-FKPSLRHFTSLLYGWC-KEGKLVEAKYVLVQMKDAGFEP---DIVVYNNLLSGYA 289
           M ER F P++  +T +++G   K+GKL EA      M D G  P    + +  N L G+ 
Sbjct: 409 MSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWG 468

Query: 290 QM 291
           QM
Sbjct: 469 QM 470



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 37/202 (18%)

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + M++ GI P       ++ +   K+ +    E  G+ +  G VP    Y++++R   +
Sbjct: 161 FNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWAR 220

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           + +   A  V++EM                   L + C+++   Y               
Sbjct: 221 IRDASGARKVFDEM-------------------LERNCVVDLLAY--------------- 246

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
               ALL++L ++  V+    ++  +   G + + Y++ I+IH+    G V  A      
Sbjct: 247 ---NALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDR 303

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M   D++P   TF  +++ L K
Sbjct: 304 MKRYDLVPNVYTFNHIIKTLCK 325


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/404 (31%), Positives = 216/404 (53%), Gaps = 8/404 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK----QPNYVHSYDVYRALIK 146
           LE AL      L   L   V++R   A    +R++ WA+        + H+   Y  ++ 
Sbjct: 170 LEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVH 229

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            L K R+F ++ AL++EM KE    +  + F I ++ FA+A  +K A+ V + M  +G +
Sbjct: 230 ILGKARQFQSMVALIQEMGKEG--ALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFD 287

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
                F CLL AL +    +EA ++FD MR+R+ P LR +T+L+  WC    LVEA  V 
Sbjct: 288 DGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVW 347

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M + G +PD+VV+N ++ G  +  +  +A ++ + M+ KG  PN  +YT+LI+  C+ 
Sbjct: 348 NEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKR 407

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            KM+ A R F EM+  GC+ DV TYT L+ G+  ++++DR   +L+ M Q+G  P+  TY
Sbjct: 408 GKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTY 467

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-ELKEAVNVWNEME 445
             ++     +   ++   +  +M K G  P +  YN++++     G        VW EM 
Sbjct: 468 NALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMH 527

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
              + P  +S+ V ++G +  G   EAC+Y +EM+ +G +  PQ
Sbjct: 528 RKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKG-MKTPQ 570



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 156/349 (44%), Gaps = 5/349 (1%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  L K    +    L  EM +     +  F   +  +   G++  A  V   M+  GF
Sbjct: 227 MVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGF 286

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +  +  +N LL   AQ G   +A ++   MR +   P+  SYT L+ A C    + EA R
Sbjct: 287 DDGVESFNCLLVALAQEGLGREANQVFDRMRDRYA-PDLRSYTALMLAWCNARNLVEAGR 345

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            + EM  +G + DVV + T+I G  + ++     ++ + M  +G  PN  TY  ++  H 
Sbjct: 346 VWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHC 405

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+ +++  +    EM+ +GC PDV+ Y  ++        +     +  EM      P   
Sbjct: 406 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 465

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS-LLRAQKVEMAKDVW 513
           ++  ++     +    +A   +K+M+ +GL   P   T   ++ S  L  +   M   VW
Sbjct: 466 TYNALIKLLTNRNMPDDAARIYKKMIKKGL--EPTIHTYNMMMKSYFLGGRNYMMGCAVW 523

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQPD 561
             +  KG   +V ++T++I+    +G  +EAC Y  +M+   +  PQ D
Sbjct: 524 EEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQID 572



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM  + +AR + +A  V +EM + G +PD  V   +++ L +     EA K+F+ M+
Sbjct: 327 YTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMK 386

Query: 237 ERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P++  +T L+   CK GK+  A     +M+D G +PD+  Y  LL GY    +M 
Sbjct: 387 AKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMD 446

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------ 337
               LL+EM +KGC P+  +Y  LI+ L      ++A R +                   
Sbjct: 447 RVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMM 506

Query: 338 ------------------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                             EM R G   DV +YT  I+G  +  + +   + ++ MIQ+G+
Sbjct: 507 KSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGM 566

Query: 380 LPNQLTY 386
              Q+ Y
Sbjct: 567 KTPQIDY 573



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 3/224 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V+  +I+ L + ++      + E M+ + P       + +L+R       +  A+   +E
Sbjct: 361 VHNTMIEGLLRGQRRPEAVKMFELMKAKGPA-PNVWTYTMLIRDHCKRGKMDMAMRCFEE 419

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M   GC+PD   + CLL        +     L +EM ++   P  R + +L+        
Sbjct: 420 MQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNM 479

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK-MTDAFELLKEMRRKGCDPNANSYT 317
             +A  +  +M   G EP I  YN ++  Y   G+       + +EM RKG  P+ NSYT
Sbjct: 480 PDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYT 539

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           V I    R  + EEA +   EM + G +   + Y    + F K 
Sbjct: 540 VFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKG 583



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 4/228 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G     +TY  ++    K+R+      ++  M + G L      + I  +     E++ 
Sbjct: 215 GGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIK-SFAAAGEIKN 273

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            V +   MR  G    V ++N ++    + G  +EA  V++ M     +P   S+  ++ 
Sbjct: 274 AVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRD-RYAPDLRSYTALML 332

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            +     L+EA   + EM+  GL   P       ++  LLR Q+   A  ++  +  KG 
Sbjct: 333 AWCNARNLVEAGRVWNEMLENGL--KPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP 390

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             NV+ +T+ I      G +  A     +M D    P   T+  L+ G
Sbjct: 391 APNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVG 438


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 223/431 (51%), Gaps = 11/431 (2%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           + M   +Q   V     Y  LI    K  +      +++ M    P ++T   +  ++R 
Sbjct: 113 WVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM-NVAPDVVT---YNTILRT 168

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
              +  +K+A+EVLD   +  C PD   +  L++A CK S V +A KL DEMR +  KP 
Sbjct: 169 LCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 228

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +  L+ G CKEG+L EA   L  M   G +P+++ +N +L      G+  DA +LL 
Sbjct: 229 VVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLS 288

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M RKGC P+  ++ +LI  LCR   +  A     +M   GC  + ++Y  L+ GFCK +
Sbjct: 289 DMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK 348

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K+DR  E LD M+ RG  P+ +TY  ++ A  K  +++  VE++ ++   GC P +  YN
Sbjct: 349 KMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYN 408

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            VI    K+G+ + A+ + +EM    L P   ++  +V G   +G + EA ++F ++ G 
Sbjct: 409 TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 468

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+   P   T  +++  L ++++ + A D  + +++K C+     +TI I  +   G  K
Sbjct: 469 GI--RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 526

Query: 543 EACSYCLDMMD 553
           EA    LD+++
Sbjct: 527 EA----LDLLN 533



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 187/387 (48%), Gaps = 35/387 (9%)

Query: 219 LCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
           L +N  +++  K  + M  R   P +   TSL+ G+C+ GK  +A +V+  ++ +G  PD
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMR-------------------------------- 305
           ++ YN L+SGY + G++ +A ++L  M                                 
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           +K C P+  +YT+LI+A C+   + +A +   EM   G + DVVTY  LI+G CK  ++D
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              + L++M   G  PN +T+  I+ +        +  +L+ +M + GC P V  +N++I
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 306

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+ G L  A+++  +M     +P + S+  ++HGF  +  +  A EY   MV RG  
Sbjct: 307 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG-- 364

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T   LL +L +  KV++A ++ + + +KGC   +  +   I  L   G  + A 
Sbjct: 365 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI 424

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
               +M    + P   T++ L+ GL +
Sbjct: 425 KLLDEMRRKGLKPDIITYSSLVSGLSR 451



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 177/348 (50%), Gaps = 6/348 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI++  K    G    L++EMR +  KP ++T   + +L+        + +AI+ L+
Sbjct: 197 YTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVT---YNVLINGICKEGRLDEAIKFLN 253

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            MP YGC+P+      +L ++C      +A KL  +M R+   PS+  F  L+   C++G
Sbjct: 254 NMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 313

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  +L +M   G  P+ + YN LL G+ +  KM  A E L  M  +GC P+  +Y 
Sbjct: 314 LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYN 373

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALC+  K++ A     ++   GC   ++TY T+I G  K  K +R  ++LD M ++
Sbjct: 374 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 433

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++    ++ +++E ++   ++  +G  P+   YN ++   CK  +   A
Sbjct: 434 GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 493

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           ++    M +    P   ++ +++ G   +G   EA +   E+  RGL+
Sbjct: 494 IDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLV 541



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 157/300 (52%), Gaps = 10/300 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN +     +  +++S+    ++     L+ +M ++   P ++T   F IL+       
Sbjct: 261 QPNVI----THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT---FNILINFLCRQG 313

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           ++ +AI++L++MP +GC P+   +  LL   CK   +  A +  D M  R   P +  + 
Sbjct: 314 LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYN 373

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +LL   CK+GK+  A  +L Q+   G  P ++ YN ++ G +++GK   A +LL EMRRK
Sbjct: 374 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 433

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y+ L+  L R  K++EA + F ++E  G   + +TY +++ G CKSR+ DR 
Sbjct: 434 GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 493

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            + L  MI +   P + TY  ++     +   +E ++L+ E+   G V   S   V +++
Sbjct: 494 IDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 553



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 34/336 (10%)

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           N L    + G++ D F+ L+ M  +G  P+    T LI+  CR+ K ++A      +E+S
Sbjct: 62  NHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS 121

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSM---------------------------- 374
           G   DV+TY  LISG+CKS +ID   ++LD M                            
Sbjct: 122 GAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEV 181

Query: 375 ----IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
               +Q+   P+ +TY  ++ A  K+  + + ++L+ EMR  G  PDV  YNV+I   CK
Sbjct: 182 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 241

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G L EA+   N M +    P   +  +++      G  ++A +   +M+ +G   +P  
Sbjct: 242 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG--CSPSV 299

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   L+N L R   +  A D+   +   GC  N  ++   +H       +  A  Y   
Sbjct: 300 VTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDI 359

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           M+     P   T+  L+  L K     +A EI  ++
Sbjct: 360 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 395


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 221/405 (54%), Gaps = 14/405 (3%)

Query: 91  LELALQHSGVVLRPGLTERVI----NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIK 146
           LE AL      L P L E V+    +R   A    YR++ WA+    + H+   Y  ++ 
Sbjct: 181 LEAALS----ALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTTITYCKMLH 236

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            L K R+F ++ A+++EM K     ++ + F + ++ FA+A  +K A+ V + M K G +
Sbjct: 237 ILGKTRQFESMVAMIQEMGKAG--ALSMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFD 294

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
                F CLL AL K    +EA ++FD+M  ++ P LR +T+L+  WC    LVEA  V 
Sbjct: 295 DGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVW 354

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M + G +PD+VV+N ++ G  +  +  +A ++ + M+ KG  PN  +YT+LI+  C+ 
Sbjct: 355 NEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQ 414

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            KM+ A   F EM+ + C+ DV TYT L+ G+  ++++DR   +L+ M Q+G  P+  TY
Sbjct: 415 GKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTY 474

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN--VWNEM 444
             ++     +   ++   +  +M K G  P +  YN++++ +  +G+   A+   VW EM
Sbjct: 475 NALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMK-SYFVGDSNYAMGCAVWEEM 533

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
               + P  +S+ V ++G +  G   EA +Y +EM+ +G + APQ
Sbjct: 534 HQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKG-MKAPQ 577



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 38/281 (13%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM  + +AR + +A  V +EM + G +PD  V   +++ L +     EA K+F+ M+
Sbjct: 334 YTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMK 393

Query: 237 ERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +  P ++  +T L+   CK+GK+  A     +M++A  +PD+  Y  LL GY    +M 
Sbjct: 394 AKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMD 453

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA--------- 346
               +L+EM +KGC P+A +Y  LI+ L      ++A R + +M + G E          
Sbjct: 454 RVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMM 513

Query: 347 ---------------------------DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                                      DV +YT  I+G  +  + +  Y+ ++ MI +G+
Sbjct: 514 KSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGM 573

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              Q+ Y        K  + +   EL  +++  G + DVSN
Sbjct: 574 KAPQIDYNKFAADFSKAGKPDILFELAQKVKFAGKL-DVSN 613



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 5/234 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V+  +I+ L + ++      + E M+ + P       + +L+R       +  A+E  +E
Sbjct: 368 VHNTMIEGLLRGQRRPEAVKMFELMKAKGPP-PNVWTYTMLIRDHCKQGKMDMAMECFEE 426

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M +  C+PD   + CLL        +     + +EM ++   P  R + +L+        
Sbjct: 427 MQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNM 486

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF--ELLKEMRRKGCDPNANSY 316
             +A  +  +M   G EP I  YN ++  Y  +G    A    + +EM ++G  P+ NSY
Sbjct: 487 PDDAARIYKKMIKKGLEPTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSY 545

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           TV I    R  + EEA +   EM   G +A  + Y    + F K+ K D  +E+
Sbjct: 546 TVFINGHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFEL 599



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 4/228 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G     +TY  ++    K+R+ +    ++  M + G L      + I  +     E++ 
Sbjct: 222 GGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIK-SFAAAGEIKN 280

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            V +   MRK G    V ++N ++    K G  +EA  V+++M     SP   S+  ++ 
Sbjct: 281 AVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHG-QYSPDLRSYTALML 339

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            +     L+EA   + EM+ +G+   P       ++  LLR Q+   A  ++  +  KG 
Sbjct: 340 AWCNARNLVEAGRVWNEMLEKGM--DPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP 397

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             NV+ +T+ I      G +  A     +M +A   P   T+  L+ G
Sbjct: 398 PPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVG 445


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 218/427 (51%), Gaps = 6/427 (1%)

Query: 66  SHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY 125
           S +    D + I  IL++      +++  ++  G+ +   L   V++R  +     + ++
Sbjct: 17  SDDGLFQDAKTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFF 76

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRR 183
           +WA++QP Y HS   Y ++I  L KMRKF   W L++EMR  K    L+T +  +I++R+
Sbjct: 77  LWAARQPGYAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRK 136

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
           + +   V +AI       ++  +     F  LL ALC+  +V++A +L    +  F  + 
Sbjct: 137 YCAVHDVGRAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNT 196

Query: 244 RHFTSLLYGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           + F  +L GWC   G   E++ V  +M   G   D+V Y +++S Y++ G +     L K
Sbjct: 197 KSFNIVLNGWCNLIGSPRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYK 256

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M++ G +P+   Y  +I AL +   + EA      ME  G   ++VTY +LI   C++R
Sbjct: 257 QMKKIGIEPDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRAR 316

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K++      D M++R I P   TY H  L   +    EE   L+ +MRK+GC P    Y 
Sbjct: 317 KVEEAKGAFDDMLKRCISPTIRTY-HAFLRILRTG--EEVFALLEKMRKMGCQPINDTYI 373

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++IR  C+  +L+    +W+EM    +SP   S++V++HG    G L  A +Y+ EM  +
Sbjct: 374 MLIRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEK 433

Query: 483 GLLSAPQ 489
            LL  P+
Sbjct: 434 QLLPEPK 440


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 218/437 (49%), Gaps = 9/437 (2%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           DV  I  IL +      +++  ++H GV +   L   V++R  +     + +++WA +Q 
Sbjct: 96  DVTIIMSILHQLSGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWEAAFTFFLWAGRQL 155

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP--QLITTEVFVILMRRFASARMV 190
            Y HS   Y A+I  L KMRKF   WAL++EMR  K    L+T +  +I++R++ +   V
Sbjct: 156 GYSHSVREYHAMISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKYCAVHDV 215

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
            +AI       ++  +     F  LL ALC+  +V++A  L    ++ F  + + F  +L
Sbjct: 216 GRAINTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIVL 275

Query: 251 YGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
            GWC   G   EA  +  +M       D+V Y +++S Y++ G +   F+L  +M+  G 
Sbjct: 276 NGWCNVIGSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGI 335

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
           +P+   Y  +I AL +   + EA      ME  G   + VTY +LI   C++RKID    
Sbjct: 336 EPDRKIYNSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARG 395

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M+Q G  P   TY H      +    EE   L+  MRK+GC P +  Y ++IR  C
Sbjct: 396 LFDEMLQHGHSPTIRTY-HAFFRSLRTG--EEVFALLENMRKLGCHPTIDTYIMLIRKFC 452

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           +  +  +   +WN++    L P   S++V++HG    G L EA +++ +M  + LL  P+
Sbjct: 453 RWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKEKQLLPDPK 512

Query: 490 YGTLKALLNSLLRAQKV 506
              L  +L + L  ++V
Sbjct: 513 ---LDEMLQTWLSNKQV 526


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 213/432 (49%), Gaps = 3/432 (0%)

Query: 69   EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
            EF  D++++ RIL    +    + +A+    V +   L ++++ R  +     + ++MW 
Sbjct: 1376 EFEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWV 1435

Query: 129  SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
              Q  Y H  D Y  ++  L K ++F  +W L+ +M  E   L++      +MRR A A 
Sbjct: 1436 GTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQM-VEVGGLMSLMTMTKVMRRLAGAS 1494

Query: 189  MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
               +AI+   +M ++G   D      LLD LCK  SVK A  +F E+R    P    F +
Sbjct: 1495 RWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNT 1554

Query: 249  LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            L++GWCK   L EA   + +MK  GF P +V Y +L+  Y         + LL EMR++ 
Sbjct: 1555 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 1614

Query: 309  CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            C PN  +YT+L+ AL +  +  EA   F +++  G   D   Y +LI    ++ +++  Y
Sbjct: 1615 CPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAY 1674

Query: 369  EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
             +++ M   GI PN  T+  ++ A     + E  ++L+ +M +  C PD+  Y  +++L 
Sbjct: 1675 SVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 1734

Query: 429  CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            CK   +K  + +   M    +SP   ++ ++V      G + ++C + +EMV +G   AP
Sbjct: 1735 CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF--AP 1792

Query: 489  QYGTLKALLNSL 500
            +  T   ++  L
Sbjct: 1793 KQETFDLVMEKL 1804



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 38/290 (13%)

Query: 143  ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
             L+ +L K R       + +E+R   P       F  L+  +  ARM+K+A++ ++EM +
Sbjct: 1520 VLLDTLCKERSVKRARGVFQELRGTIPP--DENSFNTLVHGWCKARMLKEALDTMEEMKQ 1577

Query: 203  YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
            +G  P    +  L++A C     +    L DEMR+R   P++  +T L++   K G+  E
Sbjct: 1578 HGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTRE 1637

Query: 262  AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
            A     ++K+ G  PD   YN+L+    + G++ DA+ +++EMR  G  PN  ++  LI 
Sbjct: 1638 ALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLIS 1697

Query: 322  ALCRMEKMEEANRAFVEMERSGCEADV--------------------------------- 348
            A C   + E A +  V+ME   C  D+                                 
Sbjct: 1698 AACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISP 1757

Query: 349  --VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
               TYT L+S  C++ K+ +    L+ M+ +G  P Q T+  +M   EK+
Sbjct: 1758 DFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKR 1807



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 3/331 (0%)

Query: 242  SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
            SL   T ++       +  EA     +M   G   D    N LL    +   +  A  + 
Sbjct: 1479 SLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 1538

Query: 302  KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +E+R     P+ NS+  L+   C+   ++EA     EM++ G    VVTYT+L+  +C  
Sbjct: 1539 QELR-GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCME 1597

Query: 362  RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            +     Y +LD M +R   PN +TY  +M A  K     E ++   ++++ G  PD S Y
Sbjct: 1598 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFY 1657

Query: 422  NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            N +I +  + G L++A +V  EM    ++P   +F  ++           A +   +M  
Sbjct: 1658 NSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEE 1717

Query: 482  RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            +     P   T   LL    + Q V++   +   +  K    +   +T+ +  L  NG V
Sbjct: 1718 QS--CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 1775

Query: 542  KEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             ++C +  +M+     P+ +TF  +M  L+K
Sbjct: 1776 AQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 1806



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 3/247 (1%)

Query: 350  TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            +Y  ++    K ++ D  + +++ M++ G L + +T   +M          E ++   +M
Sbjct: 1447 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 1506

Query: 410  RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
             + G V D    NV++   CK   +K A  V+ E+   ++ P  +SF  +VHG+     L
Sbjct: 1507 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRG-TIPPDENSFNTLVHGWCKARML 1565

Query: 470  IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             EA +  +EM   G   +P   T  +L+ +    +  +    +   +  + C  NV  +T
Sbjct: 1566 KEALDTMEEMKQHGF--SPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 1623

Query: 530  IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
            I +H+L   G  +EA      + +  V P    +  L+  L +    + A  + E++R  
Sbjct: 1624 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 1683

Query: 590  AAERQIT 596
                 +T
Sbjct: 1684 GIAPNVT 1690


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 213/432 (49%), Gaps = 3/432 (0%)

Query: 69   EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
            EF  D++++ RIL    +    + +A+    V +   L ++++ R  +     + ++MW 
Sbjct: 1417 EFEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWV 1476

Query: 129  SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
              Q  Y H  D Y  ++  L K ++F  +W L+ +M  E   L++      +MRR A A 
Sbjct: 1477 GTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQM-VEVGGLMSLMTMTKVMRRLAGAS 1535

Query: 189  MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
               +AI+   +M ++G   D      LLD LCK  SVK A  +F E+R    P    F +
Sbjct: 1536 RWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNT 1595

Query: 249  LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            L++GWCK   L EA   + +MK  GF P +V Y +L+  Y         + LL EMR++ 
Sbjct: 1596 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 1655

Query: 309  CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            C PN  +YT+L+ AL +  +  EA   F +++  G   D   Y +LI    ++ +++  Y
Sbjct: 1656 CPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAY 1715

Query: 369  EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
             +++ M   GI PN  T+  ++ A     + E  ++L+ +M +  C PD+  Y  +++L 
Sbjct: 1716 SVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 1775

Query: 429  CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            CK   +K  + +   M    +SP   ++ ++V      G + ++C + +EMV +G   AP
Sbjct: 1776 CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF--AP 1833

Query: 489  QYGTLKALLNSL 500
            +  T   ++  L
Sbjct: 1834 KQETFDLVMEKL 1845



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 38/289 (13%)

Query: 144  LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
            L+ +L K R       + +E+R   P       F  L+  +  ARM+K+A++ ++EM ++
Sbjct: 1562 LLDTLCKERSVKRARGVFQELRGTIPP--DENSFNTLVHGWCKARMLKEALDTMEEMKQH 1619

Query: 204  GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
            G  P    +  L++A C     +    L DEMR+R   P++  +T L++   K G+  EA
Sbjct: 1620 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 1679

Query: 263  KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
                 ++K+ G  PD   YN+L+    + G++ DA+ +++EMR  G  PN  ++  LI A
Sbjct: 1680 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 1739

Query: 323  LCRMEKMEEANRAFVEMERSGCEADV---------------------------------- 348
             C   + E A +  V+ME   C  D+                                  
Sbjct: 1740 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 1799

Query: 349  -VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
              TYT L+S  C++ K+ +    L+ M+ +G  P Q T+  +M   EK+
Sbjct: 1800 FSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKR 1848



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 3/331 (0%)

Query: 242  SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
            SL   T ++       +  EA     +M   G   D    N LL    +   +  A  + 
Sbjct: 1520 SLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 1579

Query: 302  KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +E+R     P+ NS+  L+   C+   ++EA     EM++ G    VVTYT+L+  +C  
Sbjct: 1580 QELR-GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCME 1638

Query: 362  RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            +     Y +LD M +R   PN +TY  +M A  K     E ++   ++++ G  PD S Y
Sbjct: 1639 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFY 1698

Query: 422  NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            N +I +  + G L++A +V  EM    ++P   +F  ++           A +   +M  
Sbjct: 1699 NSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEE 1758

Query: 482  RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            +     P   T   LL    + Q V++   +   +  K    +   +T+ +  L  NG V
Sbjct: 1759 QS--CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 1816

Query: 542  KEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             ++C +  +M+     P+ +TF  +M  L+K
Sbjct: 1817 AQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 1847



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 3/247 (1%)

Query: 350  TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            +Y  ++    K ++ D  + +++ M++ G L + +T   +M          E ++   +M
Sbjct: 1488 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 1547

Query: 410  RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
             + G V D    NV++   CK   +K A  V+ E+   ++ P  +SF  +VHG+     L
Sbjct: 1548 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRG-TIPPDENSFNTLVHGWCKARML 1606

Query: 470  IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             EA +  +EM   G   +P   T  +L+ +    +  +    +   +  + C  NV  +T
Sbjct: 1607 KEALDTMEEMKQHGF--SPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 1664

Query: 530  IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
            I +H+L   G  +EA      + +  V P    +  L+  L +    + A  + E++R  
Sbjct: 1665 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 1724

Query: 590  AAERQIT 596
                 +T
Sbjct: 1725 GIAPNVT 1731


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 213/432 (49%), Gaps = 3/432 (0%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           EF  D++++ RIL    +    + +A+    V +   L ++++ R  +     + ++MW 
Sbjct: 97  EFEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWV 156

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
             Q  Y H  D Y  ++  L K ++F  +W L+ +M  E   L++      +MRR A A 
Sbjct: 157 GTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQM-VEVGGLMSLMTMTKVMRRLAGAS 215

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
              +AI+   +M ++G   D      LLD LCK  SVK A  +F E+R    P    F +
Sbjct: 216 RWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNT 275

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++GWCK   L EA   + +MK  GF P +V Y +L+  Y         + LL EMR++ 
Sbjct: 276 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 335

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +YT+L+ AL +  +  EA   F +++  G   D   Y +LI    ++ +++  Y
Sbjct: 336 CPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAY 395

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +++ M   GI PN  T+  ++ A     + E  ++L+ +M +  C PD+  Y  +++L 
Sbjct: 396 SVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 455

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   +K  + +   M    +SP   ++ ++V      G + ++C + +EMV +G   AP
Sbjct: 456 CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF--AP 513

Query: 489 QYGTLKALLNSL 500
           +  T   ++  L
Sbjct: 514 KQETFDLVMEKL 525



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 38/290 (13%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            L+ +L K R       + +E+R   P       F  L+  +  ARM+K+A++ ++EM +
Sbjct: 241 VLLDTLCKERSVKRARGVFQELRGTIPP--DENSFNTLVHGWCKARMLKEALDTMEEMKQ 298

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
           +G  P    +  L++A C     +    L DEMR+R   P++  +T L++   K G+  E
Sbjct: 299 HGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTRE 358

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A     ++K+ G  PD   YN+L+    + G++ DA+ +++EMR  G  PN  ++  LI 
Sbjct: 359 ALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLIS 418

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADV--------------------------------- 348
           A C   + E A +  V+ME   C  D+                                 
Sbjct: 419 AACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISP 478

Query: 349 --VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
              TYT L+S  C++ K+ +    L+ M+ +G  P Q T+  +M   EK+
Sbjct: 479 DFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKR 528



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 146/338 (43%), Gaps = 17/338 (5%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL   T ++       +  EA     +M   G   D    N LL    +   +  A  + 
Sbjct: 200 SLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 259

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           +E+R     P+ NS+  L+   C+   ++EA     EM++ G    VVTYT+L+  +C  
Sbjct: 260 QELR-GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCME 318

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
           +     Y +LD M +R   PN +TY  +M A  K     E ++   ++++ G  PD S Y
Sbjct: 319 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFY 378

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I +  + G L++A +V  EM    ++P   +F  ++           AC++ +    
Sbjct: 379 NSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA---------ACDHSQAENA 429

Query: 482 RGLL-------SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             LL         P   T   LL    + Q V++   +   +  K    +   +T+ +  
Sbjct: 430 LKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSW 489

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           L  NG V ++C +  +M+     P+ +TF  +M  L+K
Sbjct: 490 LCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 527



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 3/247 (1%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y  ++    K ++ D  + +++ M++ G L + +T   +M          E ++   +M
Sbjct: 168 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 227

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G V D    NV++   CK   +K A  V+ E+   ++ P  +SF  +VHG+     L
Sbjct: 228 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRG-TIPPDENSFNTLVHGWCKARML 286

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA +  +EM   G   +P   T  +L+ +    +  +    +   +  + C  NV  +T
Sbjct: 287 KEALDTMEEMKQHGF--SPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 344

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           I +H+L   G  +EA      + +  V P    +  L+  L +    + A  + E++R  
Sbjct: 345 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 404

Query: 590 AAERQIT 596
                +T
Sbjct: 405 GIAPNVT 411


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 213/432 (49%), Gaps = 3/432 (0%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           EF  D++++ RIL    +    + +A+    V +   L ++++ R  +     + ++MW 
Sbjct: 156 EFEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWV 215

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
             Q  Y H  D Y  ++  L K ++F  +W L+ +M  E   L++      +MRR A A 
Sbjct: 216 GTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQM-VEVGGLMSLMTMTKVMRRLAGAS 274

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
              +AI+   +M ++G   D      LLD LCK  SVK A  +F E+R    P    F +
Sbjct: 275 RWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNT 334

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++GWCK   L EA   + +MK  GF P +V Y +L+  Y         + LL EMR++ 
Sbjct: 335 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 394

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +YT+L+ AL +  +  EA   F +++  G   D   Y +LI    ++ +++  Y
Sbjct: 395 CPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAY 454

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +++ M   GI PN  T+  ++ A     + E  ++L+ +M +  C PD+  Y  +++L 
Sbjct: 455 SVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 514

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   +K  + +   M    +SP   ++ ++V      G + ++C + +EMV +G   AP
Sbjct: 515 CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF--AP 572

Query: 489 QYGTLKALLNSL 500
           +  T   ++  L
Sbjct: 573 KQETFDLVMEKL 584



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 38/289 (13%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L+ +L K R       + +E+R   P       F  L+  +  ARM+K+A++ ++EM ++
Sbjct: 301 LLDTLCKERSVKRARGVFQELRGTIPP--DENSFNTLVHGWCKARMLKEALDTMEEMKQH 358

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
           G  P    +  L++A C     +    L DEMR+R   P++  +T L++   K G+  EA
Sbjct: 359 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 418

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
                ++K+ G  PD   YN+L+    + G++ DA+ +++EMR  G  PN  ++  LI A
Sbjct: 419 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 478

Query: 323 LCRMEKMEEANRAFVEMERSGCEADV---------------------------------- 348
            C   + E A +  V+ME   C  D+                                  
Sbjct: 479 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 538

Query: 349 -VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             TYT L+S  C++ K+ +    L+ M+ +G  P Q T+  +M   EK+
Sbjct: 539 FSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKR 587



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 146/338 (43%), Gaps = 17/338 (5%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL   T ++       +  EA     +M   G   D    N LL    +   +  A  + 
Sbjct: 259 SLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 318

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           +E+R     P+ NS+  L+   C+   ++EA     EM++ G    VVTYT+L+  +C  
Sbjct: 319 QELR-GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCME 377

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
           +     Y +LD M +R   PN +TY  +M A  K     E ++   ++++ G  PD S Y
Sbjct: 378 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFY 437

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I +  + G L++A +V  EM    ++P   +F  ++           AC++ +    
Sbjct: 438 NSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA---------ACDHSQAENA 488

Query: 482 RGLL-------SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             LL         P   T   LL    + Q V++   +   +  K    +   +T+ +  
Sbjct: 489 LKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSW 548

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           L  NG V ++C +  +M+     P+ +TF  +M  L+K
Sbjct: 549 LCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 586



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 3/247 (1%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y  ++    K ++ D  + +++ M++ G L + +T   +M          E ++   +M
Sbjct: 227 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 286

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G V D    NV++   CK   +K A  V+ E+   ++ P  +SF  +VHG+     L
Sbjct: 287 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRG-TIPPDENSFNTLVHGWCKARML 345

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA +  +EM   G   +P   T  +L+ +    +  +    +   +  + C  NV  +T
Sbjct: 346 KEALDTMEEMKQHGF--SPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 403

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           I +H+L   G  +EA      + +  V P    +  L+  L +    + A  + E++R  
Sbjct: 404 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 463

Query: 590 AAERQIT 596
                +T
Sbjct: 464 GIAPNVT 470


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 221/405 (54%), Gaps = 14/405 (3%)

Query: 91  LELALQHSGVVLRPGLTERVI----NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIK 146
           LE AL      L P L E V+    +R   A    YR++ WA+    + H+   Y  ++ 
Sbjct: 183 LEAALS----ALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLH 238

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            L K R+F  + A+++EM K     ++ + F + ++ FA+A  +K A+ V + M K G +
Sbjct: 239 ILGKTRQFEMMVAIIQEMGKVG--ALSMDAFKVAIKSFAAAGEIKNAVGVFELMKKNGFD 296

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
                F CLL AL      +EA ++FD+M  ++ P LR +T+L+  WC    LVEA  V 
Sbjct: 297 DGVESFNCLLVALANEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVW 356

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M + G +PD+VV+N ++ G  +  +  +A ++ + M+ KG  PN  +YT+LI+  C+ 
Sbjct: 357 NEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKR 416

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            KM+ A   F EM+ + C+ DV TYT L+ G+  ++++DR   +L+ M Q+G  P+  TY
Sbjct: 417 GKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTY 476

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN--VWNEM 444
             ++     ++  ++   +  +M K G  P +  YN++++ +  LG+   A+   VW EM
Sbjct: 477 NALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMK-SYFLGDRNYAMGCAVWEEM 535

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
               + P  +S+ V ++G +  G   EA +Y +EM+ +G ++APQ
Sbjct: 536 HRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKG-MTAPQ 579



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 37/247 (14%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM  + +AR + +A  V +EM + G +PD  V   +++ L +     EA K+F+ M+
Sbjct: 336 YTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMK 395

Query: 237 ERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +  P ++  +T L+   CK GK+  A     +M++A  +PD+  Y  LL GY    +M 
Sbjct: 396 AKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMD 455

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------ 337
               +L+EM +KGC P+A +Y  LI+ L   +  ++A R +                   
Sbjct: 456 RVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMM 515

Query: 338 ------------------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                             EM R G   DV +YT  I+G  +  + +  Y+ ++ MI +G+
Sbjct: 516 KSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGM 575

Query: 380 LPNQLTY 386
              Q+ Y
Sbjct: 576 TAPQIDY 582



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 5/234 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V+  +I+ L + ++      + E M+ + P       + +L+R       +  A+E  +E
Sbjct: 370 VHNTMIEGLLRGQRRPEALKMFELMKAKGPP-PNVWTYTMLIRDHCKRGKMDMAMECFEE 428

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M +  C+PD   + CLL        +     + +EM ++   P  R + +L+        
Sbjct: 429 MQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKM 488

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF--ELLKEMRRKGCDPNANSY 316
             +A  +  +M   G EP I  YN ++  Y  +G    A    + +EM R+G  P+ NSY
Sbjct: 489 PDDAARIYKKMIKKGLEPTIHTYNMMMKSYF-LGDRNYAMGCAVWEEMHRRGICPDVNSY 547

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           TV I    R  + EEA +   EM   G  A  + Y    + F K+ K D  YE+
Sbjct: 548 TVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYNKFAADFSKAGKPDILYEL 601



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 4/228 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G     +TY  ++    K+R+ +    I+  M + G L      + I  +     E++ 
Sbjct: 224 GGFTHTTITYCKMLHILGKTRQFEMMVAIIQEMGKVGALSMDAFKVAIK-SFAAAGEIKN 282

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            V +   M+K G    V ++N ++      G  +EA  V+++M     SP   S+  ++ 
Sbjct: 283 AVGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVFDKMHG-QYSPDLRSYTALML 341

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            +     L+EA   + EM+ +G+   P       ++  LLR Q+   A  ++  +  KG 
Sbjct: 342 AWCNARNLVEAGRVWNEMLEKGM--KPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGP 399

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             NV+ +T+ I      G +  A     +M +A   P   T+  L+ G
Sbjct: 400 PPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVG 447



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 39/209 (18%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI+   K  K        EEM++ + Q      +  L+  + +A+ + +   VL+E
Sbjct: 405 TYTMLIRDHCKRGKMDMAMECFEEMQEARCQ-PDVATYTCLLVGYGNAKRMDRVTAVLEE 463

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM------------------------ 235
           M + GC PD   +  L+  L       +AA+++ +M                        
Sbjct: 464 MTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDR 523

Query: 236 -------------RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                        R    P +  +T  + G  + G+  EA   + +M + G     + YN
Sbjct: 524 NYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYN 583

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKG-CD 310
              + +++ GK    +EL  +++  G CD
Sbjct: 584 KFAADFSKAGKPDILYELALKVKFAGKCD 612


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 241/488 (49%), Gaps = 5/488 (1%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNY-VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           +++  G AG       + A  + N  V     Y  LI +L K  +    + L  EMR E+
Sbjct: 85  LVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMR-ER 143

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
             +  T  +  L+         +KA+E+L+EM ++GC PD   +  L+  L K+    +A
Sbjct: 144 GCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKA 203

Query: 229 AKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            KLF EM+ R  KP    FT+L+    K G++ +A  +L +MK+ G +P +V YN L++G
Sbjct: 204 FKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAG 263

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           + ++G + +A+ LL EM+R GC P+  +Y+ LI  L +  +++EA +   +ME+ GC  D
Sbjct: 264 FGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPD 323

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
            +TY TLI+G  K+  ++    + D M  +G  P+ +TY  ++ A  K   +E    L  
Sbjct: 324 TITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFE 383

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM  +G  PD+  Y  +I +  K G++ +A  +++EM    LSP   ++   ++     G
Sbjct: 384 EMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGG 443

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
              EA + F++M   GLL  P   T  ALL  L + ++V+ A  +   ++ +GC  +   
Sbjct: 444 RFKEARKIFEDMKESGLL--PDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLK 501

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +   +  L S G+V EA           + P   ++  L+  L K      A    E ++
Sbjct: 502 FDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLK 561

Query: 588 KMAAERQI 595
           +   +  I
Sbjct: 562 EQGGKPDI 569



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 211/405 (52%), Gaps = 6/405 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  L+   A A   ++A  + +E+      PD   + CL+++L +    + A
Sbjct: 7   PNVVT---YNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAA 63

Query: 229 AKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++  EM+ +  KP+L  + +L+    K G+  EA  +L +M+D G  PD+  YN L+S 
Sbjct: 64  LEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIST 123

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             + G++++AF L  EMR +GC P+  +Y  LI  L ++ + ++A     EMER GC  D
Sbjct: 124 LGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPD 183

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V+TY++LI+G  K  +  + +++   M +RG  P+ +T+  +M A  K   +++ +EL+ 
Sbjct: 184 VMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLD 243

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM++ G  P V  YN +I    K+G+L EA N+ +EM+     P   ++  ++ G +   
Sbjct: 244 EMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKAS 303

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            L EAC+  K+M   G    P   T   L+N L +A  +  A  ++  + +KGC  +V  
Sbjct: 304 QLDEACQVLKKMEKEG--CPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVT 361

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           ++  I +L     V+ AC    +M    + P   T+  ++  L K
Sbjct: 362 YSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGK 406



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 6/353 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ALI    K+      + L++EM++   KP ++T   +  L+     A  + +A +VL
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVT---YSCLITGLIKASQLDEACQVL 312

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
            +M K GC PD   +  L++ L K   + +A +LFD M+ +   P +  +++L+    K 
Sbjct: 313 KKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKA 372

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++  A  +  +M+  G +PD+  Y ++++   + G++ DA  L  EMR KG  P+  +Y
Sbjct: 373 ARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITY 432

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
              + +L R  + +EA + F +M+ SG   DV TY  L+ G  K++++D    +L  +I+
Sbjct: 433 NAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIE 492

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G   + L +   +        ++E  EL+      G  P  S+YN +I    K G + E
Sbjct: 493 QGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSE 552

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           A N   +++     P   S+  ++      G +  A E  +EM  RGL  +P+
Sbjct: 553 AFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPR 605



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 168/365 (46%), Gaps = 11/365 (3%)

Query: 102 LRPGLT--ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVW 158
           ++PG+     +I   G  G+L   Y +    + N      V Y  LI  L K  +     
Sbjct: 250 VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEAC 309

Query: 159 ALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
            ++++M KE   P  IT   +  L+     A ++  A  + D M   GC PD   +  L+
Sbjct: 310 QVLKKMEKEGCPPDTIT---YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLI 366

Query: 217 DALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
            AL K + V+ A  LF+EM     +P L  + S++    K G++ +A  +  +M+  G  
Sbjct: 367 TALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLS 426

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD++ YN  L+   + G+  +A ++ ++M+  G  P+  +Y  L+  L + +++++A   
Sbjct: 427 PDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGL 486

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             E+   GC  D + +   +        +D  +E+L     +G+ P   +Y  ++ A  K
Sbjct: 487 LKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAK 546

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME--AASLSPGT 453
              + E    + ++++ G  PD+ +Y+ +I    + G++  A  +  EM      LSP +
Sbjct: 547 AGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRS 606

Query: 454 DSFVV 458
            S +V
Sbjct: 607 YSNLV 611



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y A + SL +  +F     + E+M KE   L     +  L+   +  + V  A  +L E
Sbjct: 431 TYNAFLNSLGRGGRFKEARKIFEDM-KESGLLPDVATYDALLLGLSKTKEVDDACGLLKE 489

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           + + GC  D   F   L+ L    +V EA +L      +   P    + +L+    K G+
Sbjct: 490 LIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGR 549

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA   L  +K+ G +PDIV Y++L+S   Q G++  AFELL+EM ++G   +  SY+ 
Sbjct: 550 VSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSN 609

Query: 319 LIQAL 323
           L++ L
Sbjct: 610 LVRKL 614


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 217/421 (51%), Gaps = 8/421 (1%)

Query: 105 GLTERVINRCGDAGN-----LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
            +  RVI +CG   +         ++ WA+    + HS + Y  +I    K+R+F   W 
Sbjct: 108 AIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQ 167

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L++ M+    + I  E F IL+RR+  A +  +A+   + M  YGC+PD+  F  ++ +L
Sbjct: 168 LIDLMKTRNVE-IPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSL 226

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
            K     EA   FD +++RF+P +  +TSL++GWC+ G + EA+ V  +MK AG +P++ 
Sbjct: 227 SKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVY 286

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y+ ++    + G++T A ++  EM   GCDPNA ++  L++   +  + E+  + + +M
Sbjct: 287 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 346

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +R GC  D +TY  LI   C+   ++   +IL+S +++G   N  ++  I     K  ++
Sbjct: 347 KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDV 405

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
                +  +M+ + C P+   YN+++R+          + +  EM+   + P  +++ V+
Sbjct: 406 NSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVL 465

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           +  F G G    A  +FKEM+    L  P     + +L  L +A +++  +++   +V +
Sbjct: 466 ISTFCGIGHWNNAYSFFKEMIEEKCLR-PSLPVYEMVLQQLRKAGQLKKHEELVEKMVNR 524

Query: 520 G 520
           G
Sbjct: 525 G 525



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 3/183 (1%)

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y+ ++    K  + +   +L+  M+       V  + +++R   K G   EAV+ +N ME
Sbjct: 149 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 208

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
                P   +F V++     +   IEA  +F  +  R     P      +L++   RA  
Sbjct: 209 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDR---FEPDVVVYTSLVHGWCRAGN 265

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           +  A+ V+  +   G + NVY ++I I +L  +G +  A     +M+D    P   TF  
Sbjct: 266 ISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNN 325

Query: 566 LMR 568
           LMR
Sbjct: 326 LMR 328



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 3/238 (1%)

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  +I    K R+ D  ++++D M  R +     T+  ++  + K     E V     M 
Sbjct: 149 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 208

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             GC PD   ++VVI    K     EA + ++ ++     P    +  +VHG+   G + 
Sbjct: 209 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-RFEPDVVVYTSLVHGWCRAGNIS 267

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA   F EM   G+   P   T   ++++L R+ ++  A DV+S ++  GC+ N   +  
Sbjct: 268 EAERVFGEMKMAGI--QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNN 325

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            +      G  ++       M      P   T+  L+    +  N + A +I   V+K
Sbjct: 326 LMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK 383


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/424 (31%), Positives = 227/424 (53%), Gaps = 15/424 (3%)

Query: 91  LELALQHSGVVLRPGLTERVI----NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIK 146
           LE AL      L P L E V+    +R   A    YR++ WA+    + H+   Y  ++ 
Sbjct: 179 LEAALS----ALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLL 234

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            L K R+F ++ AL++EM K     ++ + F + ++ FA+A  +K A+ V + M K G +
Sbjct: 235 ILGKTRQFESMVALLQEMGKAG--TLSMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFD 292

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
                F CLL AL      +EA ++FD+M  ++ P LR +T+L+  WC    LVEA  V 
Sbjct: 293 DGVESFNCLLVALANEGLGREARQVFDKMLGQYSPDLRSYTALMLAWCNARNLVEAGRVW 352

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M + G +PD+VV+N ++ G  +  +  +A ++ + M+ KG  PN  +YT+LI   C+ 
Sbjct: 353 NEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTMLICNHCKR 412

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            KM+ A   F EM+ + C+ DV TYT L+ G+  ++++DR   +L+ M Q+G  P+  TY
Sbjct: 413 GKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTY 472

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN--VWNEM 444
             ++     ++  ++   +  +M K G  P +  YN++++ +  LG+   A+   VW EM
Sbjct: 473 NALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMK-SYFLGDRNYAMGCAVWEEM 531

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
               + P  +S+ V + G +  G   EA +Y +EM+ +G + APQ    K     L +A 
Sbjct: 532 HRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKG-MKAPQIDCNK-FAADLSKAG 589

Query: 505 KVEM 508
           K++M
Sbjct: 590 KLDM 593



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 127/281 (45%), Gaps = 38/281 (13%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM  + +AR + +A  V +EM + G +PD  V   +++ L +     EA K+F+ M+
Sbjct: 332 YTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMK 391

Query: 237 ERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +  P ++  +T L+   CK GK+  A     +M++A  +PD+  Y  LL GY    +M 
Sbjct: 392 AKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMD 451

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------ 337
               +L+EM +KGC P+A +Y  LI+ L   +  ++A R +                   
Sbjct: 452 RVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMM 511

Query: 338 ------------------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                             EM R G   DV +YT  ISG  +  + +  Y+ ++ MI +G+
Sbjct: 512 KSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGM 571

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              Q+          K  +L+   EL  +++  G   DVSN
Sbjct: 572 KAPQIDCNKFAADLSKAGKLDMLYELAQKVKFAGKF-DVSN 611



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 44/270 (16%)

Query: 141 YRALIKSLSKMRKF---GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y AL+ +    R     G VW  M E +  KP ++     +  + R    +   +A+++ 
Sbjct: 332 YTALMLAWCNARNLVEAGRVWNEMLE-KGMKPDVVVHNTMIEGLLR---GQRQHEAVKMF 387

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
           + M   G  P+ + +  L+   CK   +  A + F+EM+E R +P +  +T LL G+   
Sbjct: 388 ELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNA 447

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP----- 311
            ++     VL +M   G  PD   YN L+          DA  + K+M +KG DP     
Sbjct: 448 KRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTY 507

Query: 312 -------------------------------NANSYTVLIQALCRMEKMEEANRAFVEME 340
                                          + NSYTV I    R  + EEA +   EM 
Sbjct: 508 NMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMI 567

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
             G +A  +      +   K+ K+D  YE+
Sbjct: 568 NKGMKAPQIDCNKFAADLSKAGKLDMLYEL 597



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 33/224 (14%)

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G     +TY  ++L   K  + E  V L+ EM K G +  +  + V I+     GE+K A
Sbjct: 221 GFTHTTITYCKMLLILGKTRQFESMVALLQEMGKAGTL-SMDAFKVAIKSFAAAGEIKNA 279

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG---------------- 481
           V V+  M       G +SF  ++     +G   EA + F +M+G                
Sbjct: 280 VGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQYSPDLRSYTALMLAW 339

Query: 482 ---RGLLSA-------------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
              R L+ A             P       ++  LLR Q+   A  ++  +  KG   NV
Sbjct: 340 CNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNV 399

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           + +T+ I +    G +  A     +M +A   P   T+  L+ G
Sbjct: 400 WTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVG 443



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 38/206 (18%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI +  K  K        EEM++ + Q      +  L+  + +A+ + +   VL+E
Sbjct: 401 TYTMLICNHCKRGKMDMAMECFEEMQEARCQ-PDVATYTCLLVGYGNAKRMDRVTAVLEE 459

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM------------------------ 235
           M + GC PD   +  L+  L       +AA+++ +M                        
Sbjct: 460 MTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDR 519

Query: 236 -------------RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                        R    P +  +T  + G  + G+  EA   + +M + G +   +  N
Sbjct: 520 NYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMKAPQIDCN 579

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKG 308
              +  ++ GK+   +EL ++++  G
Sbjct: 580 KFAADLSKAGKLDMLYELAQKVKFAG 605


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 215/432 (49%), Gaps = 3/432 (0%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           EF  D++++ RIL    +    + +A+    V +   + ++++ R G      + ++MWA
Sbjct: 91  EFEADIDEVSRILSSHFASPEAIVIAMDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWA 150

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
             Q  Y H  D+Y  ++  L K ++F  +W L+ +M  E   L++      +MRR A A 
Sbjct: 151 GAQEGYCHHADLYNLMVDILGKFKQFDLLWGLIRQM-DEIGCLVSLATMTKVMRRLAGAN 209

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
               AI+  ++M ++G   D      LLD LCK  SVK A  +F E+R    P    F +
Sbjct: 210 RWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGVVPPDESSFNT 269

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++GWC+   L EA+  + +M++ GF P ++ Y +L+  Y         + +L EM  KG
Sbjct: 270 LVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKG 329

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +YT+++ AL +  + +EA   F +++R GC  D   Y ++I    ++ +++   
Sbjct: 330 CRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDAN 389

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + D M + GI P    +  ++ A     + E  ++++ +M +  C PD+  Y  +++L 
Sbjct: 390 SVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLC 449

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   +K    +   M    +SP   +++++V      G   ++C + +EMV +G +  P
Sbjct: 450 CKRQWMKILPFLICHMFRKDISPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFM--P 507

Query: 489 QYGTLKALLNSL 500
           +  T   ++  L
Sbjct: 508 KQETFDLVMEKL 519



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 7/203 (3%)

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  ++    K ++ D  + ++  M + G L +  T   +M          + ++   +M 
Sbjct: 163 YNLMVDILGKFKQFDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMD 222

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + G V D    N ++   CK   +K A  V+ E+    + P   SF  +VHG+     L 
Sbjct: 223 QFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGV-VPPDESSFNTLVHGWCQARMLN 281

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA +  KEM   G   +P   T  +L+ +    +  +    + + + +KGC  NV  +TI
Sbjct: 282 EARDTMKEMEEHGF--SPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTI 339

Query: 531 WIHSLFSNGHVKEACSYCLDMMD 553
            +H+L   G  +EA    LD+ D
Sbjct: 340 VMHALGKAGRTQEA----LDVFD 358


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 220/405 (54%), Gaps = 14/405 (3%)

Query: 91  LELALQHSGVVLRPGLTERVI----NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIK 146
           LE AL      L P L E V+    +R   A    YR++ WA+    + H+   Y  ++ 
Sbjct: 181 LEAALS----ALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTTITYCKMLH 236

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            L K R+F ++ A+++EM K     ++ + F + ++ FA+A  +K A+ V + M K G +
Sbjct: 237 ILGKTRQFESMVAMIQEMGKAG--ALSMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFD 294

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
                F CLL AL K    +EA ++FD+M  ++ P LR +T+L+  WC    LVEA  V 
Sbjct: 295 DGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVW 354

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M + G +PD+VV+N ++ G  +  +  +A ++ + M+ KG  PN  +YT+LI+  C+ 
Sbjct: 355 NEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQ 414

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            KM+ A   F EM+ + C+ DV TYT L+ G+  ++++DR   +L+ M Q+G  P+  TY
Sbjct: 415 GKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTY 474

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN--VWNEM 444
             ++     +   ++   +  +M K G  P +  YN++++ +  +G+   A+   VW EM
Sbjct: 475 NALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMK-SYFVGDSNYAMGCAVWEEM 533

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
               + P  +S+ V ++  +  G   EA +Y +EM+ +G + APQ
Sbjct: 534 HQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEMINKG-MKAPQ 577



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 5/234 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V+  +I+ L + ++      + E M+ + P       + +L+R       +  A+E  +E
Sbjct: 368 VHNTMIEGLLRGQRRPEAVKMFELMKAKGPP-PNVWTYTMLIRDHCKQGKMDMAMECFEE 426

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M +  C+PD   + CLL        +     + +EM ++   P  R + +L+        
Sbjct: 427 MQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNM 486

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF--ELLKEMRRKGCDPNANSY 316
             +A  +  +M   G EP I  YN ++  Y  +G    A    + +EM ++G  P+ NSY
Sbjct: 487 PDDAARIYKKMIKKGLEPTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSY 545

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           TV I    R  + EEA +   EM   G +A  + Y    + F K+ K D  +E+
Sbjct: 546 TVFINRHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFEL 599



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 4/228 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G     +TY  ++    K+R+ +    ++  M + G L      + I  +     E++ 
Sbjct: 222 GGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIK-SFAAAGEIKN 280

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            V +   MRK G    V ++N ++    K G  +EA  V+++M     SP   S+  ++ 
Sbjct: 281 AVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHG-QYSPDLRSYTALML 339

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            +     L+EA   + EM+ +G+   P       ++  LLR Q+   A  ++  +  KG 
Sbjct: 340 AWCNARNLVEAGRVWNEMLEKGM--DPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP 397

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             NV+ +T+ I      G +  A     +M +A   P   T+  L+ G
Sbjct: 398 PPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVG 445



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 38/206 (18%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI+   K  K        EEM++ K Q      +  L+  + +A+ + +   VL+E
Sbjct: 403 TYTMLIRDHCKQGKMDMAMECFEEMQEAKCQ-PDVATYTCLLVGYGNAKQMDRVTAVLEE 461

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF--------------------------- 232
           M + GC PD   +  L+  L   +   +AA+++                           
Sbjct: 462 MTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDS 521

Query: 233 ---------DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                    +EM +R   P +  +T  +    + G+  EA   + +M + G +   + YN
Sbjct: 522 NYAMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEMINKGMKAPQIDYN 581

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKG 308
              + +++ GK    FEL ++++  G
Sbjct: 582 KFAADFSKAGKPDILFELAQKVKFAG 607


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 215/436 (49%), Gaps = 3/436 (0%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           EF  D ++  RIL    +    + +A+    V +   + ++++ R G      + ++MWA
Sbjct: 91  EFEADFDEASRILTSCFASPEAIVIAMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWA 150

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
             Q  Y HS D Y +++  L K ++F  +W L+ +M  E   L++      +MRR A A 
Sbjct: 151 GAQEGYRHSADSYNSMVDILGKFKQFDLMWGLISQM-DEIGGLVSLATMTKVMRRLAGAS 209

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
               AI+  ++M ++G   D      LLD LCK  SVK A   F E+R    P    F +
Sbjct: 210 RWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNT 269

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++GWCK   + EA+ ++ +M++ GF+P ++ Y +L+  Y         + +L EMR KG
Sbjct: 270 LVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKG 329

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +YT+++ AL +  + +EA   F ++   GC  D   Y +LI    ++ +++   
Sbjct: 330 CPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDAN 389

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            ++D M   G+ P   T+  ++ A     + E  ++++ +M +  C PD+  Y  +++L 
Sbjct: 390 SVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLC 449

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   +K    +   M    ++P   ++ ++V      G   ++C + +EMV +G   AP
Sbjct: 450 CKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGF--AP 507

Query: 489 QYGTLKALLNSLLRAQ 504
           +  T   +   L +A 
Sbjct: 508 KKETFDLVAEKLDKAN 523



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 142/331 (42%), Gaps = 3/331 (0%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL   T ++       +  +A     +M   G   D    N LL    +   +  A    
Sbjct: 194 SLATMTKVMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAF 253

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           +E+R     P+ +S+  L+   C+   M EA     EME  G +  V+TYT+LI  +C  
Sbjct: 254 QELR-GSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCME 312

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
           +     Y IL+ M  +G  PN +TY  +M A  K    +E +++  ++R  GC PD S Y
Sbjct: 313 KDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFY 372

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I +  + G L++A +V ++M    + P   +F  ++           A +   +M  
Sbjct: 373 NSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEE 432

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
           +     P   T   LL    + Q +++ + +   +  K    +   +T+ +  L  NG  
Sbjct: 433 QS--CKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKP 490

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            ++C +  +M+     P+ +TF  +   L K
Sbjct: 491 AQSCLFLEEMVLKGFAPKKETFDLVAEKLDK 521



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 11/242 (4%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y +++    K ++ D  + ++  M + G L +  T   +M          + ++   +M
Sbjct: 162 SYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKM 221

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G V D +  NV++   CK   +K A   + E+   S+ P   SF  +VHG+     +
Sbjct: 222 DQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRG-SVPPDESSFNTLVHGWCKARMM 280

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA +  KEM   G    P   T  +L+ +    +  +    + + + +KGC  NV  +T
Sbjct: 281 NEARDMMKEMEEHGF--KPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYT 338

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDA----DVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
           I +H+L   G  +EA    LD+ D        P    +  L+  L +    + A  + +K
Sbjct: 339 IVMHALGKAGRTQEA----LDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDK 394

Query: 586 VR 587
           +R
Sbjct: 395 MR 396


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 212/405 (52%), Gaps = 7/405 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI    K  + G+   L++ M    P ++T   +  ++R    +  +K+A+EVLD  
Sbjct: 183 YNVLISGYCKTGEIGSALQLLDRM-SVSPDVVT---YNTILRTLCDSGKLKEAMEVLDRQ 238

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C PD   +  L++A CK S V +A KL DEMR++  KP +  +  L+ G CKEG+L
Sbjct: 239 MQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRL 298

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA   L  M   G +P+++ +N +L      G+  DA + L EM RKGC P+  ++ +L
Sbjct: 299 DEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNIL 358

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LCR   +  A     +M + GC  + ++Y  L+   CK +K++R  E LD M+ RG 
Sbjct: 359 INFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGC 418

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++ A  K  +++  VE++ ++   GC P +  YN VI    K+G+  +A+ 
Sbjct: 419 YPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIK 478

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + +EM+   L P   ++  +V G   +G + EA  +F ++   G+   P   T  +++  
Sbjct: 479 LLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGV--KPNAITYNSIMLG 536

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L +A++   A D  + +V +GC+    ++ I I  L   G  KEA
Sbjct: 537 LCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEA 581



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 208/431 (48%), Gaps = 11/431 (2%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +LI+ L K  K      +ME +      P +IT   + +L+  +     +  A+++LD M
Sbjct: 150 SLIRGLCKTGKTWKATRVMEILEDSGAVPDVIT---YNVLISGYCKTGEIGSALQLLDRM 206

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEGKL 259
                 PD   +  +L  LC +  +KEA ++ D +M+    P +  +T L+   CKE  +
Sbjct: 207 ---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGV 263

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L +M+D G +PD+V YN L++G  + G++ +A   L  M   GC PN  ++ ++
Sbjct: 264 GQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNII 323

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++++C   +  +A +   EM R GC   VVT+  LI+  C+   I R  ++L+ M Q G 
Sbjct: 324 LRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGC 383

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN L+Y  ++ A  K +++E  +E +  M   GC PD+  YN ++   CK G++  AV 
Sbjct: 384 TPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 443

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + N++ +   SP   ++  ++ G    G   +A +   EM G+GL   P   T   L+  
Sbjct: 444 ILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGL--KPDIITYSTLVGG 501

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L R  KV+ A   +  +   G + N   +   +  L        A  +   M+     P 
Sbjct: 502 LSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPT 561

Query: 560 PDTFAKLMRGL 570
             ++  L+ GL
Sbjct: 562 ETSYMILIEGL 572



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 189/393 (48%), Gaps = 6/393 (1%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +RR      +++  + L++M   G  PD      L+  LCK     +A ++ + + +   
Sbjct: 117 LRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGA 176

Query: 241 -PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P +  +  L+ G+CK G++  A  +L +M      PD+V YN +L      GK+ +A E
Sbjct: 177 VPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAME 233

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +L    ++ C P+  +YT+LI+A C+   + +A +   EM   GC+ DVVTY  LI+G C
Sbjct: 234 VLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  ++D     L+ M   G  PN +T+  I+ +        +  + + EM + GC P V 
Sbjct: 294 KEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVV 353

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N++I   C+ G +  A++V  +M     +P + S+  ++H       +  A EY   M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V RG    P   T   LL +L +  KV++A ++ + + +KGC   +  +   I  L   G
Sbjct: 414 VSRG--CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVG 471

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +A     +M    + P   T++ L+ GL +
Sbjct: 472 KTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSR 504



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 172/348 (49%), Gaps = 6/348 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI++  K    G    L++EMR +  KP ++T   + +L+        + +AI  L+
Sbjct: 250 YTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVT---YNVLINGICKEGRLDEAIRFLN 306

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            MP YGC+P+      +L ++C      +A K   EM R+   PS+  F  L+   C++G
Sbjct: 307 HMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKG 366

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  VL +M   G  P+ + YN LL    +  KM  A E L  M  +GC P+  +Y 
Sbjct: 367 LIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYN 426

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALC+  K++ A     ++   GC   ++TY T+I G  K  K D   ++LD M  +
Sbjct: 427 TLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGK 486

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++    ++ +++E +    ++ ++G  P+   YN ++   CK  +   A
Sbjct: 487 GLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRA 546

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           ++    M A    P   S+++++ G   +G   EA E   E+  RG++
Sbjct: 547 IDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVV 594



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 162/299 (54%), Gaps = 8/299 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARM 189
           QPN +    + R++    S  R   A   L E +RK   P ++T   F IL+       +
Sbjct: 314 QPNVITHNIILRSMC---STGRWMDAEKFLAEMIRKGCSPSVVT---FNILINFLCRKGL 367

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +AI+VL++MP++GC P+   +  LL ALCK+  ++ A +  D M  R   P +  + +
Sbjct: 368 IGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNT 427

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL   CK+GK+  A  +L Q+   G  P ++ YN ++ G +++GK  DA +LL EM+ KG
Sbjct: 428 LLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKG 487

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y+ L+  L R  K++EA   F ++E  G + + +TY +++ G CK+R+  R  
Sbjct: 488 LKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAI 547

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + L  M+ RG  P + +Y+ ++     +   +E +EL+ E+   G V   S   VV+++
Sbjct: 548 DFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVVKI 606



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 153/337 (45%), Gaps = 34/337 (10%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           NN L    + G++ + F+ L++M  +G  P+  + T LI+ LC+  K  +A R    +E 
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED 173

Query: 342 SGCEADVVTYTTLISGFCK--------------------------------SRKIDRCYE 369
           SG   DV+TY  LISG+CK                                S K+    E
Sbjct: 174 SGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAME 233

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +LD  +QR   P+ +TY  ++ A  K+  + + ++L+ EMR  GC PDV  YNV+I   C
Sbjct: 234 VLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G L EA+   N M +    P   +  +++      G  ++A ++  EM+ +G   +P 
Sbjct: 294 KEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG--CSPS 351

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T   L+N L R   +  A DV   +   GC  N  ++   +H+L  +  ++ A  Y  
Sbjct: 352 VVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLD 411

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            M+     P   T+  L+  L K     +A EI  ++
Sbjct: 412 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 448


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 221/440 (50%), Gaps = 9/440 (2%)

Query: 88  LPKLELALQ--HSGVVLRPGLTERVINRCGDAGN-----LGYRYYMWASKQPNYVHSYDV 140
           +P L LA     +   + P +  RVI +CG   +         ++ W+S    +  S + 
Sbjct: 121 IPDLSLAFSAISAAHPISPSVAHRVIEKCGGVRHGIPFLQSLAFFNWSSSLDGFPASPEP 180

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  ++    K+R+F   W +++ M+    + IT   F  L+RR+  A +  +A+   + M
Sbjct: 181 YNEMLDLAGKLRQFDLAWHVIDLMKSRGVE-ITVHTFSALVRRYVRAGLAAEAVHAFNRM 239

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
             YGC PD   F  ++ +LCK     EA   FD ++ RF+P +  +TSL++GWC+ G + 
Sbjct: 240 EDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDIS 299

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           +A+ V   MK AG +P++  Y+ ++    + G++T A ++  EM   GCDPNA ++  L+
Sbjct: 300 KAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLM 359

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
           +   +  + E+  + + +M+R GC AD ++Y  +I   C+   ++   +IL+ M+++G+ 
Sbjct: 360 RVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVA 419

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN  T+  I     K  ++     +   M+++ C P+   YN+++R+  +       + +
Sbjct: 420 PNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKM 479

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
             EM+ + + P  +++ +++  F        A +   EMV    L  P     + +L  L
Sbjct: 480 KKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLR-PNLSVYETVLELL 538

Query: 501 LRAQKVEMAKDVWSCIVTKG 520
            +A +++  +++   +V +G
Sbjct: 539 RKAGQLKKHEELVDKMVARG 558



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 147/350 (42%), Gaps = 43/350 (12%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GF      YN +L    ++ +   A+ ++  M+ +G +   ++++ L++   R     EA
Sbjct: 173 GFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEA 232

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
             AF  ME  GC  D+V ++ +IS  CK R+ +      DS+                  
Sbjct: 233 VHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSL------------------ 274

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
              K   E               PDV  Y  ++   C+ G++ +A  V+++M+ A + P 
Sbjct: 275 ---KHRFE---------------PDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPN 316

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++ +++      G +  A + F EM+  G    P   T  +L+   ++A + E    V
Sbjct: 317 VYTYSIVIDSLCRCGQITRAHDVFSEMIDAG--CDPNAVTFNSLMRVHVKAGRTEKVLKV 374

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           ++ +   GC  +  ++   I S   + +++EA      M+   V P   TF  +   + K
Sbjct: 375 YNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAK 434

Query: 573 LYNRQIAAEITEKVRKMAAER-----QITFKMYKRRGERDLKEKAKKQVD 617
           L++   A  +  +++++  +       I  +M+      D+  K KK++D
Sbjct: 435 LHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMD 484



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A  +PN V++Y +   +I SL +  +      +  EM      P  +T   F  LMR   
Sbjct: 311 AGIKPN-VYTYSI---VIDSLCRCGQITRAHDVFSEMIDAGCDPNAVT---FNSLMRVHV 363

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
            A   +K ++V ++M + GC  D   +  ++++ C++ +++EAAK+ + M ++   P+  
Sbjct: 364 KAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNAS 423

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            F  +     K   +  A  +  +MK+   +P+ + YN L+  +A+        ++ KEM
Sbjct: 424 TFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEM 483

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC-EADVVTYTTLISGFCKSRK 363
                +PN N+Y +LI   C M+    A +  +EM    C   ++  Y T++    K+ +
Sbjct: 484 DESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQ 543

Query: 364 IDRCYEILDSMIQRGILPNQL 384
           + +  E++D M+ RG +   L
Sbjct: 544 LKKHEELVDKMVARGFVTRPL 564


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/538 (25%), Positives = 256/538 (47%), Gaps = 54/538 (10%)

Query: 5   SSKALSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTH 64
           S+ A SLL+ H              + ES AT T  ++  +  L T ED           
Sbjct: 26  STSATSLLSDHE-------------NDESAATITAAVSVPISPLLTPED----------- 61

Query: 65  GSHNEFSHDVEKIFRILKKFHSRLPKLE-------------LALQHSGV---VLRPGLTE 108
                 +  VEK   I+K  + + P                L+L  S +    + P +  
Sbjct: 62  ------TQTVEKFHSIIKDHYRKNPTSPNDAILNPSLTLHALSLDFSQIETSQVSPSVVR 115

Query: 109 RVINRCGDAGN-----LGYRYYMWASKQPNYVH-SYDVYRALIKSLSKMRKFGAVWALME 162
            VI +CG   +         ++ WA+ + +Y H S   Y  +I    K+R+F   W L++
Sbjct: 116 CVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLID 175

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            M+    + I+ E F IL+RR+  A +  +A+   + M  YGC PD+  F  ++  L + 
Sbjct: 176 LMKSRNVE-ISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRK 234

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
               EA   FD +++RF+P +  +T+L+ GWC+ G++ EA+ V  +MK AG EP++  Y+
Sbjct: 235 RRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYS 294

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            ++    + G+++ A ++  +M   GC PNA ++  L++   +  + E+  + + +M++ 
Sbjct: 295 IVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKL 354

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GCE D +TY  LI   C+   ++   ++L++MI++    N  T+  I    EKK ++   
Sbjct: 355 GCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGA 414

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             +  +M +  C P+   YN+++R+          + +  EM+   + P  +++ ++V  
Sbjct: 415 HRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTM 474

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           F G G    A + FKEMV    L+ P     + +L  L RA +++  +++   ++ KG
Sbjct: 475 FCGMGHWNNAYKLFKEMVEEKCLT-PSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKG 531



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 139/312 (44%), Gaps = 10/312 (3%)

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN ++    ++ +   A+ L+  M+ +  + +  ++T+LI+   R     EA   F  ME
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             GC  D + ++ +IS   + R+        DS+  R   P+ + Y +++    +  E+ 
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEIS 272

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  ++  EM+  G  P+V  Y++VI   C+ G++  A +V+ +M  +  +P   +F  ++
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
              +  G   +  + + +M  + L   P   T   L+ +  R + +E A  V + ++ K 
Sbjct: 333 RVHVKAGRTEKVLQVYNQM--KKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           CE+N   +      +     V  A      MM+A   P   T+  LMR         + +
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMF-------VGS 443

Query: 581 EITEKVRKMAAE 592
           + T+ V KM  E
Sbjct: 444 KSTDMVLKMKKE 455



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 16/213 (7%)

Query: 393 HEKKEELEECVELMGEMRKIGCV-------------PDVSNYNVVIRLACKLGELKEAVN 439
           H+      E ++L G++R+                   +  + ++IR   + G   EAV+
Sbjct: 148 HKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVH 207

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            +N ME     P   +F +++     +    EA  +F  +  R     P       L+  
Sbjct: 208 CFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRF---EPDVIVYTNLVRG 264

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             RA ++  A+ V+  +   G E NVY ++I I +L   G +  A     DM+D+   P 
Sbjct: 265 WCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPN 324

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             TF  LMR   K    +   ++  +++K+  E
Sbjct: 325 AITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE 357


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 245/510 (48%), Gaps = 41/510 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+ +  V +L  +M      P + T     IL+  F     V  A  VL 
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN---ILINSFCHLNRVGFAFSVLA 115

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  LC    + EA  LFD+M  E F+P++  + +L+ G CK G
Sbjct: 116 KILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVG 175

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +PD+V+Y +++    +  ++T+AF L  +M  +G  P+  +YT
Sbjct: 176 NTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYT 235

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALC + + +       +M  S    DVV ++T++   CK  K+   +EI+D MIQR
Sbjct: 236 SLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR 295

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  +M  H  + E++E V++   M + G  PDV +Y  +I   CK+ ++ +A
Sbjct: 296 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 355

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-------------- 483
           + ++ EM      P T ++  ++HG    G L +A   F EMV RG              
Sbjct: 356 MYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDS 415

Query: 484 ------------LLSA-------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                       LL A       P       +++ + RA ++E A+D++S + +KG   +
Sbjct: 416 LCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 475

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           V+ + I IH L   G + EA    ++M   D  P   T+  + RG  +      A ++ E
Sbjct: 476 VWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLE 535

Query: 585 KV--RKMAAERQITFKMYKRRGERDLKEKA 612
           ++  R  +A+   T  + +   +  L + +
Sbjct: 536 EMLARGFSADVSTTTLLVEMLSDDGLDQSS 565



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 204/428 (47%), Gaps = 12/428 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y  LI  L K+    A   L+  M +   +P ++   ++  ++      R
Sbjct: 158 QPNVV----TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVV---IYTSIIDSLCKDR 210

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V +A  +  +M   G  PD F +  L+ ALC     K    L ++M   +  P +  F+
Sbjct: 211 QVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFS 270

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CKEGK+ EA  ++  M   G EPD+V Y  L+ G+    +M +A ++   M RK
Sbjct: 271 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 330

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  SYT LI   C++ K+++A   F EM R     D  TY TL+ G C   ++   
Sbjct: 331 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDA 390

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+ RG +P+ +TY  ++ +  K   LEE + L+  +      PD+  YN++I  
Sbjct: 391 IALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDG 450

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ GEL+ A ++++ + +  L P   ++ +M+HG   +G L EA + F EM G     +
Sbjct: 451 MCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGND--CS 508

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   +    L+  +   A  +   ++ +G   +V   T+ +  L  +G  + +C  
Sbjct: 509 PDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGLDQSSCFL 568

Query: 548 CLDMMDAD 555
            L ++  D
Sbjct: 569 MLSVLSED 576



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 2/330 (0%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           PS+  F  LL    K         +  QM   G  P++   N L++ +  + ++  AF +
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L ++ + G  P+  ++T LI+ LC   K+ EA   F +M   G + +VVTY TLI+G CK
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
                    +L SM Q    P+ + Y  I+ +  K  ++ E   L  +M   G  PD+  
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y  ++   C L E K    + N+M  + + P    F  +V     +G + EA E    M+
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 293

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            RG+   P   T   L++      +++ A  V+  +V KG   +V ++T  I+       
Sbjct: 294 QRGV--EPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 351

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           + +A     +M   + +P   T+  LM GL
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGL 381



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 131/329 (39%), Gaps = 51/329 (15%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P IV +  LL+  A+M   +    L  +M   G  PN  +  +LI + C + ++  A   
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G C   KI     + D MI  G  PN +TY  ++    K
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+  M +  C PDV  Y  +I   CK  ++ EA N+               
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNL--------------- 218

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
                               F +MVG+G+  +P   T  +L+++L    + +    + + 
Sbjct: 219 --------------------FSQMVGQGI--SPDIFTYTSLVHALCNLCEWKHVTTLLNQ 256

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +V      +V  ++  + +L   G V EA      M+   V P   T+  LM G      
Sbjct: 257 MVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG------ 310

Query: 576 RQIAAEITEKVRKMAAERQITFKMYKRRG 604
             + +E+ E V+         F M  R+G
Sbjct: 311 HCLQSEMDEAVK--------VFDMMVRKG 331



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/315 (17%), Positives = 126/315 (40%), Gaps = 37/315 (11%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           NN  S       + DA      +      P+   +  L+ ++ +M+          +M+ 
Sbjct: 25  NNFHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDS 84

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   +V T   LI+ FC   ++   + +L  +++ G  P+  T+  ++     + ++ E
Sbjct: 85  FGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGE 144

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            + L  +M   G  P+V  Y  +I   CK+G    A+ +   ME  +  P      V+++
Sbjct: 145 ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPD-----VVIY 199

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                                            ++++SL + ++V  A +++S +V +G 
Sbjct: 200 --------------------------------TSIIDSLCKDRQVTEAFNLFSQMVGQGI 227

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             +++ +T  +H+L +    K   +    M+++ ++P    F+ ++  L K      A E
Sbjct: 228 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 287

Query: 582 ITEKVRKMAAERQIT 596
           I + + +   E  + 
Sbjct: 288 IVDMMIQRGVEPDVV 302


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 206/396 (52%), Gaps = 7/396 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI    K  +      ++E M    P ++T   +  ++R    +  +K+A+EVLD  
Sbjct: 179 YNVLIGGYCKSGEIDKALEVLERM-SVAPDVVT---YNTILRSLCDSGKLKEAMEVLDRQ 234

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C PD   +  L++A C +S V +A KL DEMR++  KP +  +  L+ G CKEG+L
Sbjct: 235 LQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 294

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA   L  M   G +P+++ +N +L      G+  DA  LL +M RKGC P+  ++ +L
Sbjct: 295 DEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNIL 354

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LCR   +  A     +M + GC  + ++Y  L+ GFC+ +K+DR  E L+ M+ RG 
Sbjct: 355 INFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 414

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++ A  K  +++  VE++ ++   GC P +  YN VI    K+G+ + AV 
Sbjct: 415 YPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVE 474

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  EM    L P   ++  ++ G   +G + EA + F +M   GL   P   T  A++  
Sbjct: 475 LLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM--EGLSIKPSAVTYNAIMLG 532

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           L +AQ+   A D  + +V KGC+     +TI I  +
Sbjct: 533 LCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 196/395 (49%), Gaps = 6/395 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I +R+      +++ ++ L+ M   G  PD      L+   C++   K+A ++ + +   
Sbjct: 111 IHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENS 170

Query: 239 FK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P +  +  L+ G+CK G++ +A  VL +M  A   PD+V YN +L      GK+ +A
Sbjct: 171 GAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVA---PDVVTYNTILRSLCDSGKLKEA 227

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E+L    ++ C P+  +YT+LI+A C    + +A +   EM + GC+ DVVTY  LI+G
Sbjct: 228 MEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLING 287

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK  ++D   + L++M   G  PN +T+  I+ +        +   L+ +M + GC P 
Sbjct: 288 ICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPS 347

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +N++I   C+   L  A++V  +M      P + S+  ++HGF  +  +  A EY +
Sbjct: 348 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLE 407

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            MV RG    P   T   LL +L +  KV+ A ++ + + +KGC   +  +   I  L  
Sbjct: 408 IMVSRGCY--PDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTK 465

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G  + A     +M    + P   T++ L+RGL +
Sbjct: 466 VGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGR 500



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARM 189
           +PN +    + R++    S  R   A   L + +RK   P ++T   F IL+      R+
Sbjct: 310 KPNVITHNIILRSM---CSTGRWMDAERLLSDMLRKGCSPSVVT---FNILINFLCRKRL 363

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +AI+VL++MPK+GC P+   +  LL   C+   +  A +  + M  R   P +  + +
Sbjct: 364 LGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNT 423

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL   CK+GK+  A  +L Q+   G  P ++ YN ++ G  ++GK   A ELL+EMRRKG
Sbjct: 424 LLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKG 483

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y+ L++ L R  K++EA + F +ME    +   VTY  ++ G CK+++  R  
Sbjct: 484 LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAI 543

Query: 369 EILDSMIQRGILPNQLTY 386
           + L  M+++G  P + TY
Sbjct: 544 DFLAYMVEKGCKPTEATY 561


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 252/504 (50%), Gaps = 28/504 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QPN +     Y  L+    ++        L+ +M  R  +P  IT   +  +M    S R
Sbjct: 146 QPNVI----TYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAIT---YNNIMHGLCSGR 198

Query: 189 MVKKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
            +  A+++  EM + G C PD F +  ++D+L K+  V +A +L + M  +   P++  +
Sbjct: 199 KLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTY 258

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           +SLL+G CK GKL EA  +L +M  +G  P+IV YN ++ G+ ++G++ +A+ LL+EM  
Sbjct: 259 SSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD 318

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            GC PN  +YTVL+ A C+  K E+A      M   G   ++ TY +L+  FCK  +++R
Sbjct: 319 GGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVER 378

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++L SMIQ+G +PN ++Y  ++    K  ++ E V L+ +M    CVPD+  +N +I 
Sbjct: 379 ACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIID 438

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK   +  A  ++N ++ +  +P   ++  +VHG L +    +  EY    + R    
Sbjct: 439 AMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG-LCKSRRFDQAEYLLREMTRKQGC 497

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +P   T   +++ L ++++V+ A  ++  +++ G   +   ++I I SL     + EA +
Sbjct: 498 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANN 557

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE-KVRKMAAERQITFKMYKRRGE 605
               M+     P   T+  L+ G  K  N   A EI +  + K +    +TF ++     
Sbjct: 558 VLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIF----- 612

Query: 606 RDLKEKAKKQVDGRKRRARQRRWG 629
                     +D   +R R R+ G
Sbjct: 613 ----------IDWLSKRGRLRQAG 626



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 239/499 (47%), Gaps = 56/499 (11%)

Query: 97  HSGV---VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRK 153
           H+GV   +LR GL +    +C DA  L +R  M  +  P+ V     Y  +I  LSK  +
Sbjct: 9   HAGVHKSILR-GLCDA--GQCSDA-VLHFRE-MSKTCPPDSV----TYNTMINGLSKSDR 59

Query: 154 FGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211
                 L+EEM      P + +   +  ++  F  A  V+ A+ +L++M   GC PD   
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFS---YNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVS 116

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           +  +++ LCK   V EA ++ D+M +R  +P++  + +L+ G+C+ G L  A  ++ +M 
Sbjct: 117 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 176

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKM 329
           + G+ P+ + YNN++ G     K+  A +L KEM   G C P+  +Y+ ++ +L +  K+
Sbjct: 177 ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           ++A R    M   GC  +VVTY++L+ G CK+ K+D    +L  M + G  PN +TY  I
Sbjct: 237 DDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 296

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +  H K   ++E   L+ EM   GC P+V  Y V++   CK G+ ++A+           
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG---------- 346

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
                              L+E       MV +G +  P   T  +LL+   +  +VE A
Sbjct: 347 -------------------LVEV------MVEKGYV--PNLFTYNSLLDMFCKKDEVERA 379

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             + S ++ KGC  NV ++   I  L     V E       M+  + +P   TF  ++  
Sbjct: 380 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439

Query: 570 LKKLYNRQIAAEITEKVRK 588
           + K Y   IA E+   +++
Sbjct: 440 MCKTYRVDIAYELFNLIQE 458



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 187/369 (50%), Gaps = 3/369 (0%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
           M + G +    V   +L  LC      +A   F EM +   P    + +++ G  K  +L
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L +M D GF P++  YN +L G+ +  ++ +A  LL++M  +GC P+  SYT +
Sbjct: 61  DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC++++++EA R   +M + GC+ +V+TY TL+ GFC+   +D   E++  M +RG 
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAV 438
            PN +TY +IM       +L+  ++L  EM + G C PDV  Y+ ++    K G++ +A 
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   M +   SP   ++  ++HG    G L EA    + M   G   +P   T   +++
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG--CSPNIVTYNTIID 298

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +  +++ A  +   +V  GC+ NV  +T+ + +    G  ++A      M++   +P
Sbjct: 299 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVP 358

Query: 559 QPDTFAKLM 567
              T+  L+
Sbjct: 359 NLFTYNSLL 367



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 173/334 (51%), Gaps = 7/334 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +  YV +   Y +L+    K  +      L+  M ++   P +++   +  ++     A 
Sbjct: 353 EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS---YNTVIAGLCKAT 409

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V + + +L++M    C PD   F  ++DA+CK   V  A +LF+ ++E    P+L  + 
Sbjct: 410 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 469

Query: 248 SLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           SL++G CK  +  +A+Y+L +M +  G  PDI+ YN ++ G  +  ++  A++L  +M  
Sbjct: 470 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 529

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P+  +Y+++I +LC+   M+EAN     M ++G +   +TY TLI GFCK+  +D+
Sbjct: 530 DGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDK 589

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             EIL  ++ +G  P+ +T+   +    K+  L +  EL+  M + G VPD   YN +++
Sbjct: 590 ALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLK 649

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             C     ++AV+++  M      P   ++  +V
Sbjct: 650 GFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 193/399 (48%), Gaps = 14/399 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QPN V     Y  L+ +  K  K      L+E M ++   P L T   +  L+  F    
Sbjct: 322 QPNVV----TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT---YNSLLDMFCKKD 374

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V++A ++L  M + GC P+   +  ++  LCK + V E   L ++M      P +  F 
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CK  ++  A  +   ++++G  P++V YN+L+ G  +  +   A  LL+EM RK
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRK 494

Query: 308 -GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            GC P+  +Y  +I  LC+ ++++ A + F++M   G   D VTY+ +IS  CK R +D 
Sbjct: 495 QGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDE 554

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +L+ M++ G  P  +TY  ++    K   L++ +E++  +   G  PDV  +++ I 
Sbjct: 555 ANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFID 614

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              K G L++A  +   M  A L P T ++  ++ GF       +A + F+ M  R    
Sbjct: 615 WLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVM--RQCGC 672

Query: 487 APQYGTLKALLNSLLRAQKV-EMAKDVWSCIVTKGCELN 524
            P   T   L+  L+  +   ++  +V   +V  G +LN
Sbjct: 673 EPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLN 711



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 156/305 (51%), Gaps = 2/305 (0%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M   G +    V+ ++L G    G+ +DA    +EM  K C P++ +Y  +I  L + ++
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDR 59

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +++A R   EM  +G   +V +Y T++ GFCK+ +++    +L+ M+ RG  P+ ++Y  
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    K ++++E   +M +M + GC P+V  Y  ++   C++G+L  AV +  +M    
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   ++  ++HG      L  A + FKEM   G    P   T   +++SL+++ KV+ 
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGS-CPPDVFTYSTIVDSLVKSGKVDD 238

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  +   +V+KGC  NV  ++  +H L   G + EA +    M  +   P   T+  ++ 
Sbjct: 239 ACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIID 298

Query: 569 GLKKL 573
           G  KL
Sbjct: 299 GHCKL 303



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++R  C  G+  +AV  + EM + +  P + ++  M++G      L +A    +EMV  G
Sbjct: 16  ILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
              AP   +   +L+   +A +VE A  +   +V +GC  +V ++T  I+ L     V E
Sbjct: 75  F--APNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDE 132

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           AC     M+     P   T+  L+ G  ++ +   A E+   VRKM 
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVEL---VRKMT 176


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 198/379 (52%), Gaps = 17/379 (4%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           D Y A++ +L + R+F A W L+ E   +     T   F +L RR+ +A M ++A+   D
Sbjct: 104 DAYDAVVDALGRARQFDAAWRLVVEAAADG--AATPRTFAVLARRYVAAGMTRQAVRAFD 161

Query: 199 EMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
           +M  + G EPD   F  LLD LCK    K AA++F++ + +++P+ + +T L+YGWCK  
Sbjct: 162 DMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVLIYGWCKVN 221

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF----------ELLKEMRRK 307
           +   A+  L  M   G EP+IV YN LL+G  +   +   +          +LLKEM ++
Sbjct: 222 RNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQR 281

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G +PN  SY+V++    R  K E     F  M+  G    V TYT++I       ++D  
Sbjct: 282 GIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDA 341

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG--CVPDVSNYNVVI 425
             +LD M   G+ P+  TY      +  ++++   ++L  +M+  G    PD+  YN+++
Sbjct: 342 ESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILL 401

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            +  KL +    + VWN+M  +++ P  +S+ ++VHG        EAC++F EM+ RG L
Sbjct: 402 GMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 486 SAPQYGTLKALLNSLLRAQ 504
             PQ  T + L   L++A 
Sbjct: 462 --PQKITFETLYRGLIQAD 478



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 180/403 (44%), Gaps = 16/403 (3%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            +  ++DAL +      A +L  E       + R F  L   +   G   +A      M+
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 271 D-AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
              G EPD   +  LL    +      A E+  + R+   +PN   YTVLI   C++ + 
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNK-RKYKYEPNEKMYTVLIYGWCKVNRN 223

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCK----------SRKIDRCYEILDSMIQRGI 379
           + A +   +M   G E ++VTY  L++G C+           R +    ++L  M QRGI
Sbjct: 224 DMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRGI 283

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  +Y  I+  + +  + E C+ +   M++ G  P V+ Y  VI+     G L +A +
Sbjct: 284 EPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAES 343

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + +EM +  + P   ++      + G+  +  A + + +M   G  + P   T   LL  
Sbjct: 344 LLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILLGM 403

Query: 500 LLRAQKVEMAKDVWS--CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
            ++  + +    VW+  C  T G +LN Y  T+ +H L  N   +EAC + ++M++   +
Sbjct: 404 FIKLNQHDTVMQVWNDMCESTVGPDLNSY--TLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
           PQ  TF  L RGL +    +    + ++V + AA+    FK Y
Sbjct: 462 PQKITFETLYRGLIQADMLRTWRRLKKRVDEEAAKFGEEFKPY 504


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 216/421 (51%), Gaps = 8/421 (1%)

Query: 105  GLTERVINRCGDAGN-----LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
             +  RVI +CG   +         ++ WA+    + HS + Y  +I    K+R+F   W 
Sbjct: 1140 AIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQ 1199

Query: 160  LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            L++ M+    + I  E F IL+RR+  A +  +A+   + M  YGC+PD+  F  ++ +L
Sbjct: 1200 LIDLMKTRNVE-IPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSL 1258

Query: 220  CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
             K     EA   FD +++RF+P +  +TSL++GWC+ G + EA+ V  +MK AG  P++ 
Sbjct: 1259 SKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVY 1318

Query: 280  VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
             Y+ ++    + G++T A ++  EM   GCDPNA ++  L++   +  + E+  + + +M
Sbjct: 1319 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 1378

Query: 340  ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            +R GC  D +TY  LI   C+   ++   +IL+S +++G   N  ++  I     K  ++
Sbjct: 1379 KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDV 1437

Query: 400  EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
                 +  +M+ + C P+   YN+++R+          + +  EM+   + P  +++ V+
Sbjct: 1438 NSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVL 1497

Query: 460  VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
            +  F G G    A  +FKEM+    L  P     + +L  L +A +++  +++   +V +
Sbjct: 1498 ISTFCGIGHWNNAYSFFKEMIEEKCLR-PSLPVYEMVLQQLRKAGQLKKHEELVEKMVNR 1556

Query: 520  G 520
            G
Sbjct: 1557 G 1557



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 3/238 (1%)

Query: 351  YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
            Y  +I    K R+ D  ++++D M  R +     T+  ++  + K     E V     M 
Sbjct: 1181 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 1240

Query: 411  KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
              GC PD   ++VVI    K     EA + ++ ++     P    +  +VHG+   G + 
Sbjct: 1241 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-RFEPDVVVYTSLVHGWCRAGNIS 1299

Query: 471  EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            EA   F EM   G+   P   T   ++++L R+ ++  A DV+S ++  GC+ N   +  
Sbjct: 1300 EAERVFGEMKMAGI--XPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNN 1357

Query: 531  WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             +      G  ++       M      P   T+  L+    +  N + A +I   V+K
Sbjct: 1358 LMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK 1415


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 228/452 (50%), Gaps = 9/452 (1%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--IL 180
           R++ WASKQ  + H+   Y  L ++L + R+      ++   +   P  IT  VF   ++
Sbjct: 9   RFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHIL---KNGWPPGITPNVFTYAVV 65

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           ++    +  + KA E+L+EM + G  PD  ++  ++ ALCK  +  +A   F  M    +
Sbjct: 66  IQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM--ECE 123

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
            ++  +T ++ G CK  +L EA     +MK  G  P+   YN L++G+ ++ K+  A+ L
Sbjct: 124 KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLL 183

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           LKEM+  G  PN  +Y+ +I   CR  K++ A + F +M  +GC  ++VTY TL+SG C+
Sbjct: 184 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 243

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           +  +D  YE+LD M +RG+ P++ +Y  +M    K  +++  +++  +     C PDV  
Sbjct: 244 NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA 303

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y+ +I   CK G L EA  ++ +M   S  P   +F  ++ G      L EA +  + M 
Sbjct: 304 YSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME 363

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            R     P   T  +L++ L +  +V  A++V+  ++ +G E NV  +   IH       
Sbjct: 364 DRN--CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG 421

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           V  A     +M     +P   T+  L+ GL K
Sbjct: 422 VDSALLLMEEMTATGCLPDIITYNTLIDGLCK 453



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 234/502 (46%), Gaps = 43/502 (8%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMR 182
           Y    K+   V +   Y  LI    K+ K    + L++EM++    P ++T   +  ++ 
Sbjct: 148 YFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVT---YSTVIH 204

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKP 241
            F     V  A ++  +M + GC P+   +  LL  LC+N  + EA +L DEMRER  +P
Sbjct: 205 GFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQP 264

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
               + +L+ G CK GK+  A  V     +    PD+V Y+ L++G  + G++ +A +L 
Sbjct: 265 DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLF 324

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           ++MR   C+P+  ++T L+  LC+ ++++EA +    ME   C  +V+TY++LI G CK+
Sbjct: 325 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 384

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            ++    E+   MI RGI PN +TY  ++        ++  + LM EM   GC+PD+  Y
Sbjct: 385 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 444

Query: 422 NVVIRLACKLGELKEAVNVWNEMEA----------------------------------- 446
           N +I   CK G   EA  ++ +M+A                                   
Sbjct: 445 NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK 504

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
            ++ P   +F  +V G+   G + +A    +EMV      +P   T  +L++   +  ++
Sbjct: 505 QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD--CSPDVYTYTSLVDGFCKVGRM 562

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             A+ V   +  +GC+ NV  +T  I +    G    A     +M+   V P   T+  L
Sbjct: 563 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622

Query: 567 MRGLKKLYNRQIAAEITEKVRK 588
           + G     + + A +I E++ +
Sbjct: 623 IGGFCGTGDLEEARKILERLER 644



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 220/450 (48%), Gaps = 9/450 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K      + E+       P ++    +  L+     A  + +A ++ +
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA---YSTLIAGLCKAGRLDEACKLFE 325

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M +  CEPD   F  L+D LCK   ++EA ++ + M +R   P++  ++SL+ G CK G
Sbjct: 326 KMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTG 385

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A+ V  +M   G EP++V YN+L+ G+     +  A  L++EM   GC P+  +Y 
Sbjct: 386 QVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYN 445

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC+  +  EANR F +M+   C  DV+TY+ LI GFCK  +ID    + D M+++
Sbjct: 446 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 505

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            +LP+ +T+  ++  +     +++   L+ EM    C PDV  Y  ++   CK+G + EA
Sbjct: 506 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 565

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V   M      P   ++  ++  F   G    A    +EMVG G+   P   T ++L+
Sbjct: 566 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV--QPNVITYRSLI 623

Query: 498 NSLLRAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
                   +E A+ +   +   + C+ +++A+ + +  L   G +  A      +  +  
Sbjct: 624 GGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGT 683

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            P+ D +  L+RGL +      A E+ E++
Sbjct: 684 PPRHDIYVALIRGLCQGKELGKAMEVLEEM 713



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 212/431 (49%), Gaps = 7/431 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  +I +L K R           M  EK  +IT   + I++     A  + +A     +
Sbjct: 96  IYNFVIHALCKARNTAKALDYFRSMECEK-NVIT---WTIMIDGLCKANRLPEATTYFAK 151

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M K G  P+E+ +  L++  CK   V  A  L  EM+E    P++  ++++++G+C++ K
Sbjct: 152 MKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTK 211

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +  A  +  QM + G  P++V YN LLSG  + G M +A+ELL EMR +G  P+  SY  
Sbjct: 212 VDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDT 271

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC+  K++ A + F +     C  DVV Y+TLI+G CK+ ++D   ++ + M +  
Sbjct: 272 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENS 331

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +T+  +M    K + L+E  +++  M    C P+V  Y+ +I   CK G++++A 
Sbjct: 332 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 391

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            V+  M    + P   ++  ++HGF     +  A    +EM   G L  P   T   L++
Sbjct: 392 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL--PDIITYNTLID 449

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +  +   A  ++  +  K C  +V  ++  I        +  A +   DM+   V+P
Sbjct: 450 GLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLP 509

Query: 559 QPDTFAKLMRG 569
              TF+ L+ G
Sbjct: 510 DVVTFSTLVEG 520



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 160/349 (45%), Gaps = 5/349 (1%)

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           ++ F  ++  +  L     +  ++ E  ++L      G  P++  Y  ++ G  + G + 
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A ELL+EMR  G  P+A  Y  +I ALC+     +A   F  ME   CE +V+T+T +I
Sbjct: 77  KACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME---CEKNVITWTIMI 133

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G CK+ ++         M ++G +PN+ TY  ++    K  ++     L+ EM++ G  
Sbjct: 134 DGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLA 193

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+V  Y+ VI   C+  ++  A  ++ +M      P   ++  ++ G    G + EA E 
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 253

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             EM  RGL   P   +   L+  L +  K++MA  V+       C  +V A++  I  L
Sbjct: 254 LDEMRERGL--QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 311

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
              G + EAC     M +    P   TF  LM GL K    Q A ++ E
Sbjct: 312 CKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 360



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 5/249 (2%)

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           ++ G + +V TY  L     ++R+ID    IL +    GI PN  TY  ++    K  +L
Sbjct: 16  KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDL 75

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           ++  EL+ EMR+ G VPD + YN VI   CK     +A++ +  ME         ++ +M
Sbjct: 76  DKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK---NVITWTIM 132

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G      L EA  YF +M  +G  + P   T   L+N   +  KV  A  +   +   
Sbjct: 133 IDGLCKANRLPEATTYFAKMKKKG--TVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES 190

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
           G   NV  ++  IH       V  A      M++   MP   T+  L+ GL +      A
Sbjct: 191 GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 250

Query: 580 AEITEKVRK 588
            E+ +++R+
Sbjct: 251 YELLDEMRE 259



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 42/242 (17%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI    K+ +      L ++M K+   P ++T   F  L+  + +A +V  A  +L
Sbjct: 478 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT---FSTLVEGYCNAGLVDDAERLL 534

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +EM    C PD + +  L+D  CK   + EA ++   M +R  +P++  +T+L+  +C+ 
Sbjct: 535 EEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 594

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA--------------------------- 289
           GK   A  +L +M   G +P+++ Y +L+ G+                            
Sbjct: 595 GKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFA 654

Query: 290 ---------QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
                    + G+M+ A ELL+ +++ G  P  + Y  LI+ LC+ +++ +A     EM 
Sbjct: 655 YRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMT 714

Query: 341 RS 342
            S
Sbjct: 715 LS 716


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 232/452 (51%), Gaps = 7/452 (1%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D++K+   L K  +    +   L    VV+   L  +V+ R  +  N  Y +++WA+ Q 
Sbjct: 101 DIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQT 160

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASARMVK 191
            YVHS   Y A++  L K R F  +W L+ EM K E+ +L+T +    +MRR A +    
Sbjct: 161 GYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYN 220

Query: 192 KAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
           KA++   EM K YG + D      L+DAL K +S++ A ++F ++ +  KP  R F  L+
Sbjct: 221 KAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILI 280

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G+CK  K  +A+ ++  MK   F PD+V Y + +  Y + G      E+L+EMR  GC+
Sbjct: 281 HGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCN 340

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +YT+++ +L + +++ EA   + +M+  GC  D   Y++LI    K+ +     EI
Sbjct: 341 PNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEI 400

Query: 371 LDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            + M  +G+  + L Y   +   L H + E     ++ M +     C P+V  Y  ++++
Sbjct: 401 FEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKM 460

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C   ++K    + + M    +S    ++++++ G    G + EAC +F+E V +G++  
Sbjct: 461 CCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMV-- 518

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           P+  T K L++ L +    E    + S + +K
Sbjct: 519 PRDSTCKMLVDELEKKNMAEAKLKIQSLVQSK 550



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/333 (18%), Positives = 115/333 (34%), Gaps = 90/333 (27%)

Query: 280 VYNNLLSGYAQMGKMTDA--------------FELLKEMRRKGCDP--NANSYTVLIQAL 323
           ++ N  +GY   G   +A              +EL+ EM +         ++ + +++ L
Sbjct: 154 IWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRL 213

Query: 324 CRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            +  K  +A  AF+EME+S G + D +   +L+    K   I+  +E+            
Sbjct: 214 AKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVF----------- 262

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
                               ++L   ++     PD   +N++I   CK  +  +A  + +
Sbjct: 263 --------------------LKLFDTIK-----PDARTFNILIHGFCKARKFDDARAMMD 297

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M+    +P   ++   V  +  +G      E  +EM                       
Sbjct: 298 LMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR---------------------- 335

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
                            GC  NV  +TI +HSL  +  V EA      M +   +P    
Sbjct: 336 ---------------ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKF 380

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           ++ L+  L K    + AAEI E +      R +
Sbjct: 381 YSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDV 413


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 256/540 (47%), Gaps = 44/540 (8%)

Query: 6   SKALSLLTKHRRFSFAPRPNTTTS---HVESTATTTNQLNSNLVCLKTKEDDCKCNNTTD 62
           S+ LS ++      F+  P +  +   + ES AT T  ++  +  L T ED         
Sbjct: 11  SRTLSFISPRLPKPFSTSPTSLLNDHENDESAATVTGVVSVPVSSLLTPED--------- 61

Query: 63  THGSHNEFSHDVEKIFRILKKFHSR---------------LPKLELAL-QHSGVVLRPGL 106
                   +  VEK   I+K  + +               LP L L   Q     + P +
Sbjct: 62  --------TQTVEKFHSIIKDHYRKNPTNPNDAVLNPSLTLPALSLDFSQIDASRISPSV 113

Query: 107 TERVINRCGDAGN-----LGYRYYMWASKQPNYVH-SYDVYRALIKSLSKMRKFGAVWAL 160
              VI +CG   +         ++ WA+ + +Y   S   Y  +I    K+R+F   W L
Sbjct: 114 VRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHL 173

Query: 161 MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           ++ M+    + I+ E F IL+RR+  A +  +A+   + M  YGC PD+  F  ++  L 
Sbjct: 174 IDLMKSRNVE-ISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLS 232

Query: 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           +     EA   FD +++RF+P +  +T+L+ GWC+ G++ EA+ V   MK AG EP++  
Sbjct: 233 RKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYT 292

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y+ ++    + G+++ A ++  +M   GC PNA ++  L++   +  + E+  + + +M+
Sbjct: 293 YSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMK 352

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
           + GCE D +TY  LI   C+   ++   ++L++MI++    N  T+  I    EKK ++ 
Sbjct: 353 KLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVN 412

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
               +  +M +  C P+   YN+++R+          + +  +M+   + P  +++ ++V
Sbjct: 413 GAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLV 472

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
             F G G    A + FKEMV    L+ P     + +L  L RA +++  +++   ++ KG
Sbjct: 473 TMFCGMGHWNNAYKLFKEMVEEKCLT-PSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKG 531



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 130/288 (45%), Gaps = 3/288 (1%)

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN ++    ++ +   A+ L+  M+ +  + +  ++T+LI+   R     EA   F  ME
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             GC  D + ++ +IS   + R+        DS+  R   P+ + Y +++    +  E+ 
Sbjct: 214 DYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEIS 272

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  ++  +M+  G  P+V  Y++VI   C+ G++  A +V+ +M  +  +P   +F  ++
Sbjct: 273 EAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
              +  G   +  + + +M  + L   P   T   L+ +  R + +E A  V + ++ K 
Sbjct: 333 RVHVKAGRPEKVLQVYNQM--KKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKK 390

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           CE+N   +      +     V  A      MM+A   P   T+  LMR
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMR 438



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  + ++IR   + G   EAV+ +N ME     P   +F +++     +    EA  +F 
Sbjct: 186 IETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFD 245

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            +  R     P       L+    RA ++  A+ V+  +   G E NVY ++I I +L  
Sbjct: 246 SLKDRF---EPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCR 302

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            G +  A     DM+D+   P   TF  LMR   K    +   ++  +++K+  E
Sbjct: 303 CGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCE 357


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 236/477 (49%), Gaps = 12/477 (2%)

Query: 118 GNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTE 175
           G L  R  M A+  P+   + +V   L+    K  +   V + ++EM  E  +P   T  
Sbjct: 264 GALRIREQMVAAGCPSSNVTVNV---LVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFT-- 318

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F  L+        VK A+E+LD M + G +PD F +  L+  LCK   V+EA ++ ++M
Sbjct: 319 -FNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
             R F P+   + +L+   CKE ++ EA  +   +   G  PD+  +N+L+ G       
Sbjct: 378 ILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNH 437

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A EL +EM+ KGC P+  +Y +LI +LC   ++EEA     EME SGC  +VVTY TL
Sbjct: 438 RLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I GFCK+++I+   EI D M  +GI  N +TY  ++    K   +EE  +LM +M   G 
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGL 557

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD   YN ++   C+ G++K+A ++   M +    P + ++  ++ G    G +  A  
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             + +  +G++ APQ  T   ++ +L R ++   A  ++  ++ KG   +   + +    
Sbjct: 618 LLRTVQLKGMVLAPQ--TYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRG 675

Query: 535 LFS-NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           L S  G + EA  + ++M D   +P   +F  L  GL  L       ++  +V K A
Sbjct: 676 LCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQA 732



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 230/503 (45%), Gaps = 40/503 (7%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           WASKQPN+V S  +Y  +++ L K   FG++  +++EM+    + I    F+IL+  +A 
Sbjct: 94  WASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCE-IRRGTFLILIESYAK 152

Query: 187 ARMVKKAIEVLD------------------------------------EMPKYGCEPDEF 210
             +  +A+ V+D                                     M   G +PD  
Sbjct: 153 FELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVT 212

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
            F  L+ ALC+   ++ A  + +EM      P  + FT+L+ G+ +EG +  A  +  QM
Sbjct: 213 TFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQM 272

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
             AG     V  N L+ GY + G++ +    + EM  +G  P+  ++  L+  LCR+  +
Sbjct: 273 VAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHV 332

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           + A      M + G + D+ TY +LI G CK  +++   EIL+ MI R   PN +TY  +
Sbjct: 333 KHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTL 392

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +    K+ ++EE  EL   +   G +PDV  +N +I+  C     + A+ ++ EM+    
Sbjct: 393 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGC 452

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P   ++ +++     +G L EA    KEM   G   +    T   L++   + +++E A
Sbjct: 453 HPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG--CSRNVVTYNTLIDGFCKNKRIEEA 510

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           ++++  +  +G   NV  +   I  L  N  V+EA      M+   + P   T+  L+  
Sbjct: 511 EEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTY 570

Query: 570 LKKLYNRQIAAEITEKVRKMAAE 592
             +  + + AA+I + +     E
Sbjct: 571 FCRAGDIKKAADIVQTMTSNGCE 593


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 215/425 (50%), Gaps = 7/425 (1%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK---QPNYVHSYDVYR 142
           S + ++E AL    + L   L   V+ R        Y ++ WAS+   +  Y     V+ 
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHN 159

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            ++  L +MR+F  +  L +EM K K  L+    F +L+ R+A+A   ++A+++ ++   
Sbjct: 160 EILDILGRMRRFHEMTQLFDEMSKRK-GLVNERTFGVLLNRYAAAHKTEEAVKIFNKRKG 218

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
            G E D   F  LL +LC+   V+ A  LF   +  F P ++    +L GWC  G L EA
Sbjct: 219 LGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREA 278

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           K     +  +  +PD   Y   ++   + GK++ A +L + M  KGC+P+      +I A
Sbjct: 279 KRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDA 338

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC  +++ EA     EM    C+ DV TY +LI   CK ++ ++ YE+LD M Q+G LPN
Sbjct: 339 LCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPN 398

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
             TY +++ + +K EE+   +E    M + GC  +   YN++++L    G   +  +  +
Sbjct: 399 ARTYGYLLKSTKKPEEVPGILE---RMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLD 455

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EME   + P   ++ +M+HG   +G + +A  YFK+M   G++  P+   L   +N  L+
Sbjct: 456 EMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLK 515

Query: 503 AQKVE 507
            ++ E
Sbjct: 516 EREAE 520



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 132/309 (42%), Gaps = 35/309 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            ++ L+ SL + +       L    + E P  I +    +++  +     +++A    ++
Sbjct: 227 AFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKS--MNVILNGWCVLGSLREAKRFWND 284

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           +    C+PD+F +G  +++L K   +  A KLF  M E+   P +     ++   C + +
Sbjct: 285 IITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKR 344

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  VL +M +   +PD+  YN+L+    ++ +    +ELL +M +KGC PNA +Y  
Sbjct: 345 IPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGY 404

Query: 319 LIQALCR-------MEKME-------------------------EANRAFVEMERSGCEA 346
           L+++  +       +E+ME                         +      EMER+G   
Sbjct: 405 LLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGP 464

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D  TYT +I G     ++D        M   G++P   T L +   + K +E E   E  
Sbjct: 465 DQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGK 524

Query: 407 GEMRKIGCV 415
           G   K   +
Sbjct: 525 GARNKADSI 533



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 115/303 (37%), Gaps = 73/303 (24%)

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           ++G+ P   V+N +L    +M +  +  +L  EM ++    N  ++ VL+       K E
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTE 207

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA + F + +  G E D++ + TL+   C+ + ++                     +   
Sbjct: 208 EAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVE---------------------MAEF 246

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
           L H KK E                 PD+ + NV++   C LG L+EA   WN++  +   
Sbjct: 247 LFHSKKNEFP---------------PDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCK 291

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P  D F                                 YG     +NSL +A K+  A 
Sbjct: 292 P--DKFT--------------------------------YGIF---INSLTKAGKLSTAV 314

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  +  KGC  +V      I +L     + EA     +M + D  P   T+  L++ L
Sbjct: 315 KLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHL 374

Query: 571 KKL 573
            K+
Sbjct: 375 CKI 377


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 198/379 (52%), Gaps = 17/379 (4%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           D Y A++ +L + R+F A W L+ E   +     T   F +L RR+ +A M ++A+   D
Sbjct: 104 DAYDAVVDALGRARQFDAAWRLVVEAAADG--AATPRTFAVLARRYVAAGMTRQAVRAFD 161

Query: 199 EMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
           +M  + G EPD   F  LLD LCK    K AA++F++ + +++P+ + +T L+YGWCK  
Sbjct: 162 DMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVLIYGWCKVN 221

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF----------ELLKEMRRK 307
           +   A+  L  M   G EP+IV YN LL+G  +   +   +          +LLKEM ++
Sbjct: 222 RNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQR 281

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G +P+  SY+V++    R  K E     F  M+  G    V TYT++I       ++D  
Sbjct: 282 GIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDA 341

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG--CVPDVSNYNVVI 425
             +LD M   G+ P+  TY      +  ++++   ++L  +M+  G    PD+  YN+++
Sbjct: 342 ESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILL 401

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            +  KL +    + VWN+M  +++ P  +S+ ++VHG        EAC++F EM+ RG L
Sbjct: 402 GMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 486 SAPQYGTLKALLNSLLRAQ 504
             PQ  T + L   L++A 
Sbjct: 462 --PQKITFETLYRGLIQAD 478



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 180/403 (44%), Gaps = 16/403 (3%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            +  ++DAL +      A +L  E       + R F  L   +   G   +A      M+
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 271 D-AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
              G EPD   +  LL    +      A E+  + R+   +PN   YTVLI   C++ + 
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNK-RKYKYEPNEKMYTVLIYGWCKVNRN 223

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCK----------SRKIDRCYEILDSMIQRGI 379
           + A +   +M   G E ++VTY  L++G C+           R +    ++L  M QRGI
Sbjct: 224 DMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRGI 283

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+  +Y  I+  + +  + E C+ +   M++ G  P V+ Y  VI+     G L +A +
Sbjct: 284 EPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAES 343

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + +EM +  + P   ++      + G+  +  A + + +M   G  + P   T   LL  
Sbjct: 344 LLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILLGM 403

Query: 500 LLRAQKVEMAKDVWS--CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
            ++  + +    VW+  C  T G +LN Y  T+ +H L  N   +EAC + ++M++   +
Sbjct: 404 FIKLNQHDTVMQVWNDMCESTVGPDLNSY--TLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
           PQ  TF  L RGL +    +    + ++V + AA+    FK Y
Sbjct: 462 PQKITFETLYRGLIQADMLRTWRRLKKRVDEEAAKFGEEFKPY 504


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 226/465 (48%), Gaps = 8/465 (1%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMR 182
           Y    K+   V +   Y  LI    K+ K    + L++EM++    P ++T   +  ++ 
Sbjct: 29  YFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVT---YSTVIH 85

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKP 241
            F     V  A ++  +M + GC P+   +  LL  LC+N  + EA +L DEMRER  +P
Sbjct: 86  GFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQP 145

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
               + +L+ G CK GK+  A  V     +    PD+V Y+ L++G  + G++ +A +L 
Sbjct: 146 DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLF 205

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           ++MR   C+P+  ++T L+  LC+ ++++EA +    ME   C  +V+TY++LI G CK+
Sbjct: 206 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 265

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            ++    E+   MI RGI PN +TY  ++        ++  + LM EM   GC+PD+  Y
Sbjct: 266 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 325

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   CK G   EA  ++ +M+A   +P   ++  ++ GF     +  A   F +M+ 
Sbjct: 326 NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK 385

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
           + +L  P   T   L+     A  V+ A+ +   +V   C  +VY +T  +      G +
Sbjct: 386 QAVL--PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 443

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            EA      M      P   T+  L+    +     +A ++ E++
Sbjct: 444 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 220/450 (48%), Gaps = 9/450 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K      + E+       P ++    +  L+        + +A ++ +
Sbjct: 150 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV---AYSTLIAGLCKTGRLDEACKLFE 206

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M +  CEPD   F  L+D LCK   ++EA ++ + M +R   P++  ++SL+ G CK G
Sbjct: 207 KMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTG 266

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A+ V  +M   G EP++V YN+L+ G+     +  A  L++EM   GC P+  +Y 
Sbjct: 267 QVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYN 326

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC+  +  EANR F +M+   C  DV+TY+ LI GFCK  +ID    + D M+++
Sbjct: 327 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 386

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            +LP+ +T+  ++  +     +++   L+ EM    C PDV  Y  ++   CK+G + EA
Sbjct: 387 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 446

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V   M      P   ++  ++  F   G    A +  +EMVG G+   P   T ++L+
Sbjct: 447 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGV--QPNVITYRSLI 504

Query: 498 NSLLRAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
                   +E A+ +   +   + C+ +++A+ + +  L   G +  A      +  +  
Sbjct: 505 GGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGT 564

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            P+ D +  L+RGL +      A E+ E++
Sbjct: 565 PPRHDIYVALIRGLCQGKELGKAMEVLEEM 594



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 198/395 (50%), Gaps = 3/395 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            + I++     A  + +A     +M K G  P+E+ +  L++  CK   V  A  L  EM
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +E    P++  ++++++G+C++ K+  A  +  QM + G  P++V YN LLSG  + G M
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A+ELL EMR +G  P+  SY  L+  LC+  K++ A + F +     C  DVV Y+TL
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I+G CK+ ++D   ++ + M +    P+ +T+  +M    K + L+E  +++  M    C
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+V  Y+ +I   CK G++++A  V+  M    + P   ++  ++HGF     +  A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM   G L  P   T   L++ L +  +   A  ++  +  K C  +V  ++  I  
Sbjct: 309 LMEEMTATGCL--PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGG 366

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
                 +  A +   DM+   V+P   TF+ L+ G
Sbjct: 367 FCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 401



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 187/387 (48%), Gaps = 3/387 (0%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAK 263
           CE +   +  ++D LCK + + EA   F +M+++   P+   +  L+ G+CK  K+  A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +L +MK++G  P++V Y+ ++ G+ +  K+  A++L ++M   GC PN  +Y  L+  L
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           CR   M+EA     EM   G + D  +Y TL++G CK+ KID   ++ +        P+ 
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           + Y  ++    K   L+E  +L  +MR+  C PDV  +  ++   CK   L+EA  V   
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 242

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           ME  + +P   ++  ++ G    G + +A E FK M+ RG+   P   T  +L++     
Sbjct: 243 MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI--EPNVVTYNSLIHGFCMT 300

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
             V+ A  +   +   GC  ++  +   I  L   G   EA     DM      P   T+
Sbjct: 301 NGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY 360

Query: 564 AKLMRGLKKLYNRQIAAEITEKVRKMA 590
           + L+ G  KL    +A  + + + K A
Sbjct: 361 SCLIGGFCKLERIDMARTLFDDMLKQA 387



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 42/242 (17%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI    K+ +      L ++M K+   P ++T   F  L+  + +A +V  A  +L
Sbjct: 359 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT---FSTLVEGYCNAGLVDDAERLL 415

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +EM    C PD + +  L+D  CK   + EA ++   M +R  +P++  +T+L+  +C+ 
Sbjct: 416 EEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 475

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA--------------------------- 289
           GK   A  +L +M   G +P+++ Y +L+ G+                            
Sbjct: 476 GKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFA 535

Query: 290 ---------QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
                    + G+M+ A ELL+ +++ G  P  + Y  LI+ LC+ +++ +A     EM 
Sbjct: 536 YRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMT 595

Query: 341 RS 342
            S
Sbjct: 596 LS 597


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 248/519 (47%), Gaps = 25/519 (4%)

Query: 3   RSSSKALSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTD 62
           R S+   S L+ H   S   +P      +       N L SN   +         N+  D
Sbjct: 26  RFSALQFSSLSPHSWLSTPGKPLVKWPSLPDQPA--NPLPSNSAVISNP------NSAID 77

Query: 63  THGSHNEFSHDVEKIFRILKKFHSRL-PKLELALQHSGVVLRPGLTERVINRCGDAGNLG 121
                +   +D+  I  IL     R    LE AL  +G+V    L E V +    +    
Sbjct: 78  VKFEASYSPNDLSTISSILSDRSVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFL 137

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVI 179
           +  ++WA+K+  +  S  ++  LI  L+K R+F + W+L+    +  E+  L++ EVFVI
Sbjct: 138 HSLFLWAAKKSGFRPSAALFNRLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVI 197

Query: 180 LMRRFASARMVKKAIEVLD---EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD--- 233
           L+RR+A A MV+ AI   +    +        E +F  LLD+LCK   V+ A++ F+   
Sbjct: 198 LIRRYARAGMVQPAIRTYEFACNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKR 257

Query: 234 EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           EM   F+PS+R +  L+ GW +  KL  A+ +  +MK     P +V Y  L+ GY +M  
Sbjct: 258 EMGSSFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRS 317

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA---NRAFVEMERSGCEADVVT 350
           +  A EL+ EMRR+G +PNA  Y  ++ AL    + +EA      F+ +E+      + T
Sbjct: 318 VEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQG---PTIST 374

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y +L+ G+CK+  +    +IL  MI RG  P   TY +      K  ++EE + L  +M 
Sbjct: 375 YNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMI 434

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + G  PD   Y++++++ C+   L  AV V NEM+A        +  +++H         
Sbjct: 435 ESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFE 494

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           EA   F+ M+ RG++  PQY T   L +  ++    +MA
Sbjct: 495 EAFAEFEHMIHRGIV--PQYLTFCRLHDEFMKRGLTKMA 531


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 211/425 (49%), Gaps = 6/425 (1%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           +  S DV+ I  I+ +  S   + +  L+H  V L   L   V+ R  +     + +++W
Sbjct: 26  DRLSQDVKTILDIMHEMGSGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLW 85

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFA 185
           A KQP Y HS   Y ++I  L KMRKF   W L+EEMR+ +  P L+T +  +I++R++ 
Sbjct: 86  AGKQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYC 145

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH 245
           +   V +AI       ++  +     F  LL ALC+  +V++A  L    +  F    + 
Sbjct: 146 AVHDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLDTKS 205

Query: 246 FTSLLYGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           F  +L GWC        A+ +  +M     + D+V Y +++S Y++  K+     +  EM
Sbjct: 206 FNIILNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEM 265

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +++   P+   Y  +I AL +   ++EA      +E +    +VVTY +LI   CK+ K+
Sbjct: 266 KKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKV 325

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           D   ++   +++R + P   T+         KEE+    EL+ +M+++GC P +  Y ++
Sbjct: 326 DEAKQLFYEILKRHLSPTIQTFHAFFRILRTKEEV---FELLDKMKELGCYPTIETYIML 382

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +R  C+  +L +   +W+ M    +     S++V++HG    G L EA  Y+ EM  +G 
Sbjct: 383 MRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGF 442

Query: 485 LSAPQ 489
           L  P+
Sbjct: 443 LPEPK 447



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 160/357 (44%), Gaps = 13/357 (3%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY---GWCKEGKLVEAKYVLV 267
           +  ++  L K      A  L +EMR  R  PSL    +LL     +C    +  A     
Sbjct: 99  YHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHDVARAINTFY 158

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYTVLIQALCRM 326
             K   F+  +  +++LLS   +   + DA  LL     K   P +  S+ +++   C +
Sbjct: 159 AYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLL--FCNKNLFPLDTKSFNIILNGWCNL 216

Query: 327 -EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
                 A R + EM +   + DVV+Y ++IS + KS K+ +   + D M +R I P++  
Sbjct: 217 IVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKV 276

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++ A  K   ++E V L+G +      P+V  YN +I+  CK G++ EA  ++ E+ 
Sbjct: 277 YNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEIL 336

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
              LSP   +F         +  + E  +  KE     L   P   T   L+    R ++
Sbjct: 337 KRHLSPTIQTFHAFFRILRTKEEVFELLDKMKE-----LGCYPTIETYIMLMRKFCRWRQ 391

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           ++    +W  +   G   +  ++ + IH LF NG ++EA +Y  +M +   +P+P T
Sbjct: 392 LDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKT 448


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 229/478 (47%), Gaps = 39/478 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++ S  K  K      L+ +M+K    P  +T  V V      + +  +++A E++ 
Sbjct: 193 YNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLV---NGLSHSGELEQAKELIQ 249

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEG 257
           EM + G E   + +  L+   C+   + EA++L +EM  R   P+L  + +++YG CK G
Sbjct: 250 EMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWG 309

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A+ +L  M +    PD+V YN L+ GY ++G + +AF L  E+R +G  P+  +Y 
Sbjct: 310 RVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYN 369

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LCRM  ++ A R   EM + G + DV T+T L+ GFCK   +    E+ D M+ R
Sbjct: 370 TLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNR 429

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P++  Y+  ++   K  +  +   +  EM   G  PD+  YNV I    KLG LKEA
Sbjct: 430 GLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEA 489

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA---------- 487
             +  +M    L P   ++  ++H  L  G L +A   F EM+ +G+  +          
Sbjct: 490 SELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHS 549

Query: 488 -----------------------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                                  P   T  AL+N L + +K++ A   ++ +  KG   N
Sbjct: 550 YAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPN 609

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            Y +TI I+   + GH +EA     DM+D ++ P   T + L++ L K Y   +   +
Sbjct: 610 KYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKDYKSHVVRHL 667



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 244/482 (50%), Gaps = 13/482 (2%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKF 154
           L H+ V   P L  RV+N       +  R++ WA +Q  +  S   Y  ++  L++    
Sbjct: 39  LFHAAVA-EPQLLVRVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLM 97

Query: 155 GAVWALMEEMRKEKPQ--LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD---- 208
            + + +ME++   K +  ++   +  +L+  +A   M++K + V  +M   G  PD    
Sbjct: 98  RSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNC 157

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
             V   L D   ++SS+  A ++++ M E   +P++  + ++L  +CK+GK+ EA  +L+
Sbjct: 158 NRVLRLLRD---RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLL 214

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           QM+  G  P+ V YN L++G +  G++  A EL++EM R G + +A +Y  LI+  C   
Sbjct: 215 QMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKG 274

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           +++EA+R   EM   G    +VTY T++ G CK  ++    ++LD M+ + ++P+ ++Y 
Sbjct: 275 QLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYN 334

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++  + +   + E   L  E+R  G VP V  YN +I   C++G+L  A+ + +EM   
Sbjct: 335 TLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKH 394

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   +F ++V GF   G L  A E F EM+ RG L   ++  +  ++   L+     
Sbjct: 395 GPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRG-LQPDRFAYITRIVGE-LKLGDPS 452

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A  +   ++ +G   ++  + ++I  L   G++KEA      M+   ++P   T+  ++
Sbjct: 453 KAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSII 512

Query: 568 RG 569
             
Sbjct: 513 HA 514



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 181/379 (47%), Gaps = 8/379 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++  L K  +      L++ M  +   P L++    +    R  +   + +A  +  
Sbjct: 298 YNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN---IGEAFLLFA 354

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           E+   G  P    +  L+D LC+   +  A +L DEM +    P +  FT L+ G+CK G
Sbjct: 355 ELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLG 414

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  AK +  +M + G +PD   Y   + G  ++G  + AF + +EM  +G  P+  +Y 
Sbjct: 415 NLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYN 474

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           V I  L ++  ++EA+    +M  +G   D VTYT++I     +  + +   +   M+ +
Sbjct: 475 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSK 534

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  ++ ++  +  L+  +    EM + G  P+V  YN +I   CK+ ++ +A
Sbjct: 535 GIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQA 594

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              + EM+A  +SP   ++ ++++     G   EA   +K+M+ R +   P   T  ALL
Sbjct: 595 YKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI--QPDSCTHSALL 652

Query: 498 NSLLRAQKVEMAKDVWSCI 516
             L +  K  + + + + I
Sbjct: 653 KHLNKDYKSHVVRHLENVI 671



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 170/390 (43%), Gaps = 46/390 (11%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEA----AKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
           G +  E  +  +LD L +N  ++ A     K+     E     +     LL+ + K+  L
Sbjct: 76  GFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKSML 135

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD-AFELLKEMRRKGCDPNANSYTV 318
            +   V  +M   G  PD+   N +L          D A E+   M   G  P   +Y  
Sbjct: 136 EKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNT 195

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++ + C+  K++EA +  ++M++ GC  + VTY  L++G   S ++++  E++  M++ G
Sbjct: 196 MLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLG 255

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           +  +  TY  ++  + +K +L+E   L  EM   G VP +  YN ++   CK G + +A 
Sbjct: 256 LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDAR 315

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + + M   +L P   S+  +++G+   G + EA   F E+  RGL+  P   T   L++
Sbjct: 316 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLV--PSVVTYNTLID 373

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L R   +++A  +   ++  G                                     P
Sbjct: 374 GLCRMGDLDVAMRLKDEMIKHG-------------------------------------P 396

Query: 559 QPD--TFAKLMRGLKKLYNRQIAAEITEKV 586
            PD  TF  L+RG  KL N  +A E+ +++
Sbjct: 397 DPDVFTFTILVRGFCKLGNLPMAKELFDEM 426


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 192/352 (54%), Gaps = 3/352 (0%)

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           +EVLD   +  C PD   +  L++A C  S V +A KL DEM  R  KP +  +  L+ G
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CKEG+L EA   L  M   G +P+++ +N +L      G+  DA +LL EM RKGC P+
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             ++ +LI  LCR   +  A     +M   GC  + ++Y  L+ GFCK +K+DR  + L+
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ RG  P+ +TY  ++ A  K  +++  VEL+ ++   GC P +  YN VI    K+G
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVG 240

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +  +AV + +EM    L P   ++  ++ G   +G + EA ++F ++ G G+   P   T
Sbjct: 241 KTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGV--KPNAFT 298

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +++  L +AQ+ + A D  + +++KGC+    ++TI I  + + G  KEA
Sbjct: 299 YNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEA 350



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 172/348 (49%), Gaps = 6/348 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI++       G    L++EM  R  KP ++T   + +L+        + +AI+ L+
Sbjct: 19  YTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVT---YNVLVNGMCKEGRLDEAIKFLN 75

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            MP YG +P+      +L ++C      +A KL  EM R+   PS+  F  L+   C++G
Sbjct: 76  SMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKG 135

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  +L +M   G  P+ + YN LL G+ +  KM  A + L+ M  +GC P+  +Y 
Sbjct: 136 LLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYN 195

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++ ALC+  K++ A     ++   GC   ++TY T+I G  K  K D+  E+L  M  +
Sbjct: 196 TMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGK 255

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++    ++ ++EE ++   ++   G  P+   YN ++   CK  +   A
Sbjct: 256 GLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRA 315

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           ++    M +    P   S+ +++ G   +G   EA E   E+  RG++
Sbjct: 316 IDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVV 363



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 157/299 (52%), Gaps = 8/299 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARM 189
           QPN +    + R++    S  R   A   L E +RK   P ++T   F IL+       +
Sbjct: 83  QPNVITHNIILRSMC---STGRWMDAEKLLTEMVRKGCSPSVVT---FNILINFLCRKGL 136

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +AI++L++MP +GC P+   +  LL   CK   +  A +  + M  R   P +  + +
Sbjct: 137 LGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNT 196

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +L   CK+GK+  A  +L Q+   G  P ++ YN ++ G +++GK   A ELL EMR KG
Sbjct: 197 MLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKG 256

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y+ LI  L R  K+EEA + F ++E  G + +  TY +++ G CK+++ DR  
Sbjct: 257 LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAI 316

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + L  MI +G  P +++Y  ++     +   +E +EL+ E+   G V   S   VV+RL
Sbjct: 317 DFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVVRL 375



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 137/275 (49%), Gaps = 2/275 (0%)

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E+L     K C P+  +YT+LI+A C    + +A +   EM   GC+ DVVTY  L++G
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK  ++D   + L+SM   G  PN +T+  I+ +        +  +L+ EM + GC P 
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +N++I   C+ G L  A+++  +M     +P + S+  ++HGF  +  +  A +Y +
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            MV RG    P   T   +L +L +  KV+ A ++ + + +KGC   +  +   I  L  
Sbjct: 181 IMVSRG--CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G   +A     +M    + P   T++ L+ GL +
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSR 273



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 2/218 (0%)

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+LD  +++   P+ +TY  ++ A   +  + + ++L+ EM   GC PDV  YNV++   
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G L EA+   N M +    P   +  +++      G  ++A +   EMV +G   +P
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG--CSP 119

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   L+N L R   +  A D+   + T GC  N  ++   +H       +  A  Y 
Sbjct: 120 SVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYL 179

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             M+     P   T+  ++  L K      A E+  ++
Sbjct: 180 EIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQL 217


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 247/504 (49%), Gaps = 17/504 (3%)

Query: 121 GYRYYMWASKQ---PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTE 175
            Y  ++  + Q   PN V     Y  +I  L K +       + ++M  +  +P ++T  
Sbjct: 223 AYNLFLDMTDQGIPPNVV----TYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVT-- 276

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            +  L+  + S    K+ + +L EM  +G EPD F +G LLD LCK     EA KLFD M
Sbjct: 277 -YTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSM 335

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            R+  KP +  +  +L+G+  +G L E    L  M   G  P+  ++N +   +A+   +
Sbjct: 336 IRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMI 395

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A ++  +MR++G  PN  +Y  LI ALC++ ++++A   F +M   G   ++V +T+L
Sbjct: 396 GEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSL 455

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G C   K ++  E+   M+ +GI PN + +  IM     +  + +   L+  M ++G 
Sbjct: 456 VYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGT 515

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD+ +YN +IR  C +G+  EA  + + M +  L P   ++  ++HG+   G + +A  
Sbjct: 516 RPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYS 575

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F+EM+  G+   P   T   +L+ L + ++   AK+++  ++T G + ++Y + I ++ 
Sbjct: 576 VFQEMLSNGI--TPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNG 633

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L  N  V EA      +   D+     TF  ++  L K   ++ A  +   +        
Sbjct: 634 LSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPD 693

Query: 595 ITFKMYKRRGERDLKEKAKKQVDG 618
           +T   Y+   E  ++E + ++ DG
Sbjct: 694 VT--TYRLIAENLIEEGSLEEFDG 715



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 214/473 (45%), Gaps = 51/473 (10%)

Query: 144 LIKSLSKMRKFG-AVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           L+K L   ++ G A+  L+  M +    P +++   +  L++ F      ++A+E+L  M
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVS---YNTLLKGFCDENRAEEALELLHMM 192

Query: 201 PK---YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
                  C P+   +  +++       V +A  LF +M ++   P++  +T ++ G CK 
Sbjct: 193 ADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKA 252

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             +  A+ V  QM D G  P+IV Y  L+ GY  +G+  +   +LKEM   G +P+  +Y
Sbjct: 253 QVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTY 312

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC+  K  EA + F  M R G + DV  Y  ++ G+     +   +  LD M+ 
Sbjct: 313 GLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVG 372

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI PN   +  +  A  KK  + E +++  +MR+ G  P+V NY  +I   CKLG + +
Sbjct: 373 NGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDD 432

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGLLSAPQY-- 490
           A   +N+M    ++P    F  +V+G     C I+    A E F EMV +G+     +  
Sbjct: 433 AELKFNQMINEGVAPNIVVFTSLVYGL----CTIDKWEKAGELFFEMVNQGIHPNVVFFN 488

Query: 491 -------------------------GTLKALL--NSLLRAQ----KVEMAKDVWSCIVTK 519
                                    GT   ++  N+L+R      K + A  +   +++ 
Sbjct: 489 TIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSV 548

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G + N   +   +H    +G + +A S   +M+   + P   T+  ++ GL K
Sbjct: 549 GLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFK 601



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 183/398 (45%), Gaps = 39/398 (9%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F I+   FA   M+ +A+++ ++M + G  P+   +  L+DALCK   V +A   F++M
Sbjct: 381 IFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQM 440

Query: 236 -RERFKPSLRHFTSLLYG------W-----------------------------CKEGKL 259
             E   P++  FTSL+YG      W                             C EG++
Sbjct: 441 INEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRV 500

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           ++A+ ++  M+  G  PDI+ YN L+ G+  +GK  +A +LL  M   G  PN  +Y  L
Sbjct: 501 MKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTL 560

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +   CR  ++++A   F EM  +G    VVTY T++ G  K+R+     E+  +MI  G 
Sbjct: 561 LHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGK 620

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             +  TY  I+    K   ++E +++   +       D+  +N++I    K G  ++A+N
Sbjct: 621 QWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMN 680

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  + A  L P   ++ ++    + +G L E    F EM   G   AP    L  L+  
Sbjct: 681 LFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSG--CAPNSLMLNFLVRR 738

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           LL    +  A    S I  K   L     ++ I SLFS
Sbjct: 739 LLLRGDISRAGAYLSKIDEKNFSLEASTTSMLI-SLFS 775



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 181/459 (39%), Gaps = 87/459 (18%)

Query: 224 SVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGK---------LVEAKYVLVQMKDAG 273
           SV +A KLFDE     +P S+  F  LL       +         +V     +++   + 
Sbjct: 30  SVDDALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDCCSK 89

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFE---------------------------------- 299
             PD+  Y+ L+  + +MG++   F                                   
Sbjct: 90  VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149

Query: 300 ---LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA------------------------ 332
              LL+ M   GC PN  SY  L++  C   + EEA                        
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNT 209

Query: 333 -----------NRA---FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
                      ++A   F++M   G   +VVTYT +I G CK++ +DR   +   MI +G
Sbjct: 210 VINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKG 269

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN +TY  ++  +    + +E V ++ EM   G  PD   Y +++   CK G+  EA 
Sbjct: 270 VRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEAR 329

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +++ M    + P    + +++HG+  +G L E   +   MVG G+  +P +     +  
Sbjct: 330 KLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGI--SPNHYIFNIVFC 387

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           +  +   +  A D+++ +  +G   NV  +   I +L   G V +A      M++  V P
Sbjct: 388 AFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAP 447

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
               F  L+ GL  +   + A E+  ++        + F
Sbjct: 448 NIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVF 486



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 2/221 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +  +    +++ +EM       +      IL   F + R   +A E+   M
Sbjct: 557 YNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRF-SEAKELYLNM 615

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G +   + +  +L+ L KN+ V EA K+F  +  +  +  +  F  ++    K+G+ 
Sbjct: 616 ITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRK 675

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +   +   G  PD+  Y  +     + G + +   +  EM + GC PN+     L
Sbjct: 676 EDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFL 735

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           ++ L     +  A     +++      +  T + LIS F +
Sbjct: 736 VRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSR 776


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 216/445 (48%), Gaps = 18/445 (4%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D E I ++L + H+     E  LQ  G+ L P L    + R  +   +    + +A   P
Sbjct: 36  DAELISKLLLQHHNPFHATESPLQLHGITLTPTLLFHTLLRLKNHSKIALSLFHYAKTLP 95

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           N   S+  +  LI +++K+R+F   W L+ EM +      T   F+ L+RR   A + ++
Sbjct: 96  NPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRRLICAGLTRQ 155

Query: 193 AIEVLDEMPKYG---CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           A+    ++  +      P +F    LLD LCK   V+ A ++F++ +  F P+++ +T L
Sbjct: 156 AVRAFHDIDAFSETKTTPQDFC--VLLDTLCKYGHVRLAVEVFNKNKHTFPPTVKMYTVL 213

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT----------DAFE 299
           +YGWCK G++  A+  L +M D G EP++V YN LL+G  +   +           +A E
Sbjct: 214 IYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFERTIRNAEE 273

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +  +MR  G +P+  S+++L+    R  K +        M+  G   +VV YT++I    
Sbjct: 274 VFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMYTSVIKCLA 333

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDV 418
               ++    +L  M++ G+ P   TY         +++ E  + +   M++ G C+P  
Sbjct: 334 SCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKEDGLCMPSS 393

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y ++IR+  +L  +K    +W +M+     P  D + V++HG   +    EAC YF E
Sbjct: 394 HTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRWREACHYFVE 453

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRA 503
           M+  G L  P  GT ++L   L++A
Sbjct: 454 MIENGFL--PLKGTFESLYRGLIQA 476



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 172/405 (42%), Gaps = 31/405 (7%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEG---KLVEAKYVL 266
           F  L+D + K      A +L  EM +R    P+   F +L+      G   + V A + +
Sbjct: 104 FTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRRLICAGLTRQAVRAFHDI 163

Query: 267 VQMKDAGFEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
               +    P D  V  + L  Y  +    + F       +    P    YTVLI   C+
Sbjct: 164 DAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFN----KNKHTFPPTVKMYTVLIYGWCK 219

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK----------SRKIDRCYEILDSMI 375
           + +++ A     EM   G E +VVTY  L++G C+           R I    E+ D M 
Sbjct: 220 IGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFERTIRNAEEVFDQMR 279

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + GI P+  ++  ++  + +  + +  ++ +  M++ G  P+V  Y  VI+     G L+
Sbjct: 280 ESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMYTSVIKCLASCGWLE 339

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  +  EM    +SP   ++      F G+     A   FK M   GL   P   T   
Sbjct: 340 DAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKEDGL-CMPSSHTYVI 398

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+   LR   +++ K++W  +   G   ++  +T+ IH L      +EAC Y ++M++  
Sbjct: 399 LIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRWREACHYFVEMIENG 458

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEIT---EKVRKMAAERQITF 597
            +P   TF  L RGL       I A++     +++K   E  ITF
Sbjct: 459 FLPLKGTFESLYRGL-------IQADMLRTWRRLKKKLDEESITF 496


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 227/453 (50%), Gaps = 23/453 (5%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQ---HSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           S   +++ R+L   H+     E  LQ     GV L   L  +++ R   A  L       
Sbjct: 45  SPAADELARLLLAHHNPFHPAESPLQLLSGGGVSLSGDLLVQILLRLRGASKLALSLLHA 104

Query: 128 ASKQPNYVHSY---DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           A   P++V++    D Y A++ +L + R+F A W ++ +   +     +   F +L RR+
Sbjct: 105 ARLHPSFVNTQPRSDAYDAVVDALGRARQFDAAWRVVVDASADGAA--SPRTFAVLARRY 162

Query: 185 ASARMVKKAIEVLDEMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
            +A M ++AI   D+M  +   EPD   F  LLD LCK    K A ++F++ + ++ P+ 
Sbjct: 163 VAAGMTRQAIRAFDDMEAFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRKYKYGPNE 222

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF----- 298
           + ++ L+YGWCK  +   AK  L  M   G EP+IV YN LL+G  +   +   +     
Sbjct: 223 KMYSILIYGWCKVNRSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRFDRT 282

Query: 299 -----ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
                +LLKEMR +G +P+  SY++++    R  K E     F  M+  G    V TYT+
Sbjct: 283 VHAAEDLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTVATYTS 342

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I       +++    +LD M+  G+ P+  TY   +  +  ++++   +EL  +M+  G
Sbjct: 343 VIKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKAPG 402

Query: 414 CV--PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            +  PD+  YN+++ +  KL      +++W++M  +++ P  DS+ +++H F       E
Sbjct: 403 SLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWRE 462

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           AC++F EM+ +G L  PQ  T + L   L++A 
Sbjct: 463 ACQFFMEMIEKGFL--PQKITFETLYRGLIQAD 493



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 190/436 (43%), Gaps = 17/436 (3%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
           IL+R   ++++    +      P +   +P    +  ++DAL +      A ++  +   
Sbjct: 87  ILLRLRGASKLALSLLHAARLHPSFVNTQPRSDAYDAVVDALGRARQFDAAWRVVVDASA 146

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-AGFEPDIVVYNNLLSGYAQMGKMTD 296
               S R F  L   +   G   +A      M+     EPD   +  LL    +      
Sbjct: 147 DGAASPRTFAVLARRYVAAGMTRQAIRAFDDMEAFVSREPDAAEFATLLDTLCKYKYPKV 206

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A E+  + R+    PN   Y++LI   C++ + + A +   +M   G E ++VTY  L++
Sbjct: 207 ATEVFNK-RKYKYGPNEKMYSILIYGWCKVNRSDMAKKFLKDMLVHGIEPNIVTYNILLN 265

Query: 357 GFCK----------SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           G C+           R +    ++L  M  RGI P+  +Y  I+  + +  + E C+ + 
Sbjct: 266 GICRHASLHPDYRFDRTVHAAEDLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMF 325

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M++ G  P V+ Y  VI+     G L++   + +EM A  + P   ++   +  + G+
Sbjct: 326 RSMKERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGR 385

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS--CIVTKGCELN 524
             +  A E + +M   G L+AP   T   LL    +  +     D+WS  C  T G +L+
Sbjct: 386 KDVTAALELYNKMKAPGSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLD 445

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
            Y  T+ IH    +   +EAC + ++M++   +PQ  TF  L RGL +    +    +  
Sbjct: 446 SY--TLLIHCFCDSQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKR 503

Query: 585 KVRKMAAERQITFKMY 600
           +V + AA+    FK+Y
Sbjct: 504 RVDEEAAKFGDEFKLY 519


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 226/465 (48%), Gaps = 19/465 (4%)

Query: 136 HSYDV--YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVK 191
           H  DV  Y  LI SL K         L  +M  R   P ++T   + +L+        + 
Sbjct: 247 HHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVT---YSVLINGLCKVGRID 303

Query: 192 KAIEVLDEMPKYGCE--PDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---RFKPSLRHF 246
           +A E++ EM +  C+  P+   +   LD LCK S   EA +L   +R+   R  P    F
Sbjct: 304 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 363

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           ++L+ G CK G++ EA  V   M   G+ P+++ YN L++G  +  KM  A  +++ M  
Sbjct: 364 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 423

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG  P+  +Y+VL+ A C+  +++EA      M   GC  +VVT+ ++I G CKS +   
Sbjct: 424 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 483

Query: 367 CYEILDSM-IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
            +++ D M ++ G++P+++TY  ++    +     +   L+  M      PD   +N  I
Sbjct: 484 AFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFNCCI 539

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               KLG++  A+ V+N M    L P   +F +++ G    G   +A   F+EMV + L 
Sbjct: 540 NGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL- 598

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  AL++ L +A +VE A+D+   +   G   NV  +   +H L  +G ++EAC
Sbjct: 599 -QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 657

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            +  +M+ +  +P   T+  L+  L +      A ++  +++   
Sbjct: 658 QFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 702



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 230/466 (49%), Gaps = 21/466 (4%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMV 190
            YV +   Y AL+  L K  K     A++E M  +   P +IT   + +L+  F  A  V
Sbjct: 390 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVIT---YSVLVDAFCKASRV 446

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTS 248
            +A+E+L  M   GC P+   F  ++D LCK+    EA ++FD+M  +    P    + +
Sbjct: 447 DEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCT 506

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G  + G+  +A+ +L  M D    PD   +N  ++G +++G ++ A ++   M    
Sbjct: 507 LIDGLFRTGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELE 562

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  ++ +LI   C+    E+A+  F EM     + DV+T+  LI G CK+ +++   
Sbjct: 563 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAAR 622

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +ILD M   G+ PN +TY  ++    K   +EE  + + EM   GCVPD   Y  ++   
Sbjct: 623 DILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 682

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+     +A+ + +E+++    P T ++ ++V G    G   +A    +EMVG+G    P
Sbjct: 683 CRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKG--HHP 740

Query: 489 QYGTLKALLNSLLRAQKVEMAKDV---WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
              T   L++SL +A  +E A+ +    S  V++ C  NV  +++ I+ L   G + EA 
Sbjct: 741 DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEAR 800

Query: 546 SYCLDMM--DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
               +MM    DV+P   T+   + GL K   + + AE  E +R +
Sbjct: 801 ELIQEMMRKSCDVLPNIITYNSFLDGLCK---QSMMAEACELMRSL 843



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 215/466 (46%), Gaps = 47/466 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L +  + G   AL++ M         T  F   +   +    V +A++V + M
Sbjct: 504 YCTLIDGLFRTGRAGQAEALLDAMPDPD-----TYAFNCCINGLSKLGDVSRALQVYNRM 558

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            +    PD+  F  L+   CK  + ++A+ LF+EM  +  +P +  F +L+ G CK G++
Sbjct: 559 LELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 618

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A+ +L  M + G  P++V YN L+ G  + G++ +A + L+EM   GC P++ +Y  L
Sbjct: 619 EAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL 678

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALCR  + ++A +   E++  G + D VTY  L+ G  KS + ++   +L+ M+ +G 
Sbjct: 679 VYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGH 738

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKI---GCVPDVSNYNVVIRLACKLGELKE 436
            P+ +TY  ++ +  K  +LEE   L G+M       CVP+V  Y+V+I   CK+G + E
Sbjct: 739 HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDE 798

Query: 437 AVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           A  +  EM  ++  + P   ++   + G   Q  + EACE  + +    L  +P   T  
Sbjct: 799 ARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFS 858

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L++ L +                                    G   EAC+   DM+  
Sbjct: 859 TLIDGLCKC-----------------------------------GQTDEACNVFDDMIAG 883

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIA-AEITEKVRKMAAERQITFKM 599
             +P   T+  LM GL K    + A A I   V K      IT+ +
Sbjct: 884 GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSV 929



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 216/447 (48%), Gaps = 31/447 (6%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y +L+ +L +  +      L+ E++     P  +T   + IL+     +   ++AI VL+
Sbjct: 675  YGSLVYALCRASRTDDALQLVSELKSFGWDPDTVT---YNILVDGLWKSGQTEQAITVLE 731

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK----PSLRHFTSLLYGWC 254
            EM   G  PD   +  L+D+LCK   ++EA +L  +M  R      P++  ++ L+ G C
Sbjct: 732  EMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLC 791

Query: 255  KEGKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CD 310
            K G++ EA+ ++ +M  K     P+I+ YN+ L G  +   M +A EL++ +R       
Sbjct: 792  KVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVS 851

Query: 311  PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            P+  +++ LI  LC+  + +EA   F +M   G   +VVTY  L++G CK+ K++R + +
Sbjct: 852  PDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAM 911

Query: 371  LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            ++SM+ +G+ P+ +TY  ++ A  K   ++E +EL+  M   GC P+V  +N +I   CK
Sbjct: 912  IESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 971

Query: 431  LGELKEAVNVWNEMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
              +  EA  ++++M     L+P   ++  ++ G    G   +A      M        P 
Sbjct: 972  SDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAM------PDPD 1025

Query: 490  YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV----YAWTIWIHSLFSNGHVKEAC 545
                   +N L +   V  A       + +  EL +      + I I      G+ ++A 
Sbjct: 1026 TYAFNCCINGLSKLGDVSRA-------LHRMLELELVPDKVTFNILIAGACKAGNFEQAS 1078

Query: 546  SYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +   +M+  ++ P   TF  L+ GL K
Sbjct: 1079 ALFEEMVAKNLQPDVMTFGALIDGLCK 1105



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 127/542 (23%), Positives = 230/542 (42%), Gaps = 57/542 (10%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L P +   ++ +      LG ++Y WA+  P + H+   +    K L+ + K G+    +
Sbjct: 75  LHPSVAAAILAQLDGNAELGTQFYDWAAALPGFKHTIFSFN---KYLNLLVKSGSPAKAI 131

Query: 162 EEMRKEKPQLITTEVFV---ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           +  R   P       F    +L   + +   V++ +     +        ++    +L +
Sbjct: 132 DLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSVADYNI--VLQS 189

Query: 219 LCKNSSVKEAAKLF-DEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           LC+      A ++F  EM R+   P++  + +++ G CK  +L     +  ++ + G  P
Sbjct: 190 LCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHP 249

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D+V YN L+    + G + +A  L  +M  + C PN  +Y+VLI  LC++ +++EA    
Sbjct: 250 DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELI 309

Query: 337 VEMERSGCEA---------------------------------------DVVTYTTLISG 357
            EM R  C+                                        D VT++TLI G
Sbjct: 310 QEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDG 369

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK  +ID    + D MI  G +PN +TY  ++    K +++E    ++  M   G  PD
Sbjct: 370 LCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD 429

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  Y+V++   CK   + EA+ + + M +   +P   +F  ++ G        EA + F 
Sbjct: 430 VITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFD 489

Query: 478 EM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           +M +  GL+  P   T   L++ L R  +   A+ +   +     + + YA+   I+ L 
Sbjct: 490 DMALKHGLV--PDKITYCTLIDGLFRTGRAGQAEALLDAMP----DPDTYAFNCCINGLS 543

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN-RQIAAEITEKVRKMAAERQI 595
             G V  A      M++ +++P   TF  L+ G  K  N  Q +A   E V K      +
Sbjct: 544 KLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVM 603

Query: 596 TF 597
           TF
Sbjct: 604 TF 605



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 172/373 (46%), Gaps = 44/373 (11%)

Query: 136  HSYDV--YRALIKSLSKMRKFGAVWALMEEM-----RKEKPQLITTEVFVILMRRFASAR 188
            H  DV  Y  LI SL K         L  +M     R   P ++T   + +L+       
Sbjct: 738  HHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVT---YSVLINGLCKVG 794

Query: 189  MVKKAIEVLDEMPKYGCE--PDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---RFKPSL 243
             + +A E++ EM +  C+  P+   +   LD LCK S + EA +L   +R+   R  P  
Sbjct: 795  RIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDT 854

Query: 244  RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
              F++L+ G CK G+  EA  V   M   G+ P++V YN L++G  +  KM  A  +++ 
Sbjct: 855  VTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIES 914

Query: 304  MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
            M  KG  P+  +Y+VL+ A C+   ++EA      M   GC  +VVT+ ++I G CKS +
Sbjct: 915  MVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQ 974

Query: 364  IDRCYEILDSM-IQRGILPNQLTYLHIM------------------LAHEKKEELEECVE 404
                +++ D M ++ G+ P+++TY  ++                  +          C+ 
Sbjct: 975  SGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCIN 1034

Query: 405  LMGE----------MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
             + +          M ++  VPD   +N++I  ACK G  ++A  ++ EM A +L P   
Sbjct: 1035 GLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVM 1094

Query: 455  SFVVMVHGFLGQG 467
            +F  ++ G    G
Sbjct: 1095 TFGALIDGLCKAG 1107



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 153/349 (43%), Gaps = 46/349 (13%)

Query: 132  PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK----PQLITTEVFVILMRRFASA 187
            PN V     Y  LI  L K+ +      L++EM ++     P +IT   F   +      
Sbjct: 778  PNVV----TYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSF---LDGLCKQ 830

Query: 188  RMVKKAIEVLDEM--PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
             M+ +A E++  +        PD   F  L+D LCK     EA  +FD+M    + P++ 
Sbjct: 831  SMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVV 890

Query: 245  HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
             +  L+ G CK  K+  A  ++  M D G  PD++ Y+ L+  + +   + +A ELL  M
Sbjct: 891  TYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGM 950

Query: 305  RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVTYTTLISGFCKSRK 363
              +GC PN  ++  +I  LC+ ++  EA + F +M  + G   D +TY TLI G  ++  
Sbjct: 951  ASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGW 1010

Query: 364  IDRCYEILDSM----------------------------IQRGILPNQLTYLHIMLAHEK 395
              +   +LD+M                            ++  ++P+++T+  ++    K
Sbjct: 1011 AGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACK 1070

Query: 396  KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
                E+   L  EM      PDV  +  +I   CK G+++     W+ M
Sbjct: 1071 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA---TWDIM 1116


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 213/425 (50%), Gaps = 7/425 (1%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK---QPNYVHSYDVYR 142
           S + ++E AL    + L   L   V+ R        Y ++ WAS+   +  Y     V+ 
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGXESGYSPGCGVHN 159

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            ++  L +MR+F  +  L +EM K K  L     F +L+ R+A+A   ++A+++  +   
Sbjct: 160 EILDILGRMRRFHEMTQLFDEMSKRK-GLXNERTFGVLLNRYAAAHKTEEAVKIFYKRKG 218

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
            G E D   F  LL +LC+   V+ A  LF   +  F P ++    +L GWC  G L EA
Sbjct: 219 LGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREA 278

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           K     +  +  +PD   Y   ++   + GK++ A +L + M  KGC+P+      +I A
Sbjct: 279 KRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDA 338

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC  +++ EA     EM    C+ DV TY +LI   CK ++ ++ YE+LD M Q+G LPN
Sbjct: 339 LCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPN 398

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
             TY +++ + +K EE+   +E    M + GC  +   YN++++L    G   +  +  +
Sbjct: 399 ARTYGYLLKSTKKPEEVPGILE---RMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLD 455

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EME   + P   ++ +M+HG   +G + +A  YFK+M   G++  P+   L   +N  L+
Sbjct: 456 EMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLK 515

Query: 503 AQKVE 507
            ++ E
Sbjct: 516 EREAE 520



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 132/309 (42%), Gaps = 35/309 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            ++ L+ SL + +       L    + E P  I +    +++  +     +++A    ++
Sbjct: 227 AFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKS--MNVILNGWCVLGSLREAKRFWND 284

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           +    C+PD+F +G  +++L K   +  A KLF  M E+   P +     ++   C + +
Sbjct: 285 IITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKR 344

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  VL +M +   +PD+  YN+L+    ++ +    +ELL +M +KGC PNA +Y  
Sbjct: 345 IPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGY 404

Query: 319 LIQALCR-------MEKME-------------------------EANRAFVEMERSGCEA 346
           L+++  +       +E+ME                         +      EMER+G   
Sbjct: 405 LLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGP 464

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D  TYT +I G     ++D        M   G++P   T L +   + K +E E   E  
Sbjct: 465 DQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKLKEREAEPEGK 524

Query: 407 GEMRKIGCV 415
           G   K   +
Sbjct: 525 GARNKADSI 533



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 115/303 (37%), Gaps = 73/303 (24%)

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           ++G+ P   V+N +L    +M +  +  +L  EM ++    N  ++ VL+       K E
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTE 207

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA + F + +  G E D++ + TL+   C+ + ++                     +   
Sbjct: 208 EAVKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVE---------------------MAEF 246

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
           L H KK E                 PD+ + NV++   C LG L+EA   WN++  +   
Sbjct: 247 LFHSKKNEFP---------------PDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCK 291

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P  D F                                 YG     +NSL +A K+  A 
Sbjct: 292 P--DKFT--------------------------------YGIF---INSLTKAGKLSTAV 314

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  +  KGC  +V      I +L     + EA     +M + D  P   T+  L++ L
Sbjct: 315 KLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHL 374

Query: 571 KKL 573
            K+
Sbjct: 375 CKI 377


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 227/466 (48%), Gaps = 39/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+ +  V +L  +M      P + T     IL+  F     V  A  VL 
Sbjct: 68  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN---ILINSFCHLNRVGFAFSVLA 124

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  LC    + EA  LFD+M  E F+P++  + +L+ G CK G
Sbjct: 125 KILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVG 184

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +PD+V+Y +++    +  ++T+AF L  +M  +G  P+  +YT
Sbjct: 185 NTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYT 244

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALC + + +       +M  S    DVV ++T++   CK  K+   +EI+D MIQR
Sbjct: 245 SLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR 304

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  +M  H  + E++E V++   M + G  PDV +Y  +I   CK+ ++ +A
Sbjct: 305 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 364

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-------------- 483
           + ++ EM      P T ++  +++G    G L +A   F EMV RG              
Sbjct: 365 MYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDS 424

Query: 484 ------------LLSA-------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                       LL A       P       +++ + RA ++E A+D++S + +KG   +
Sbjct: 425 LCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 484

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V+ + I IH L   G + EA    ++M   D  P   T+  + RG 
Sbjct: 485 VWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGF 530



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 176/354 (49%), Gaps = 10/354 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y  LI  L K+    A   L+  M +   +P ++   ++  ++      R
Sbjct: 167 QPNVV----TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVV---IYTSIIDSLCKDR 219

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V +A  +  +M   G  PD F +  L+ ALC     K    L ++M   +  P +  F+
Sbjct: 220 QVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFS 279

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CKEGK+ EA  ++  M   G EPD+V Y  L+ G+    +M +A ++   M RK
Sbjct: 280 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 339

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  SYT LI   C++ K+++A   F EM R     D  TY TL+ G C   ++   
Sbjct: 340 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDA 399

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+ RG +P+ +TY  ++ +  K   LEE + L+  +      PD+  YN++I  
Sbjct: 400 IALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDG 459

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            C+ GEL+ A ++++ + +  L P   ++ +M+HG   +G L EA + F EM G
Sbjct: 460 MCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG 513



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 178/357 (49%), Gaps = 10/357 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASAR 188
           QP+ V    +Y ++I SL K R+    + L  +M     Q I+ ++F    L+    +  
Sbjct: 202 QPDVV----IYTSIIDSLCKDRQVTEAFNLFSQMVG---QGISPDIFTYTSLVHALCNLC 254

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K    +L++M      PD  +F  ++DALCK   V EA ++ D M +R  +P +  +T
Sbjct: 255 EWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYT 314

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G C + ++ EA  V   M   GF PD++ Y  L++GY ++ K+  A  L +EM RK
Sbjct: 315 TLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRK 374

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              P+  +Y  L+  LC + ++++A   F EM   G   D+VTY+ L+   CK+R ++  
Sbjct: 375 EWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEA 434

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L ++    + P+   Y  I+    +  ELE   +L   +   G  P V  YN++I  
Sbjct: 435 MALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHG 494

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            CK G L EA  ++ EM+    SP   ++  +  GFL     + A +  +EM+ RG 
Sbjct: 495 LCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 551



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 163/324 (50%), Gaps = 8/324 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +L+ +L  + ++  V  L+ +M   K  P ++   +F  ++        V +A E++
Sbjct: 242 TYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVV---IFSTVVDALCKEGKVTEAHEIV 298

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           D M + G EPD   +  L+D  C  S + EA K+FD M R+ F P +  +T+L+ G+CK 
Sbjct: 299 DMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKI 358

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            K+ +A Y+  +M    + PD   YN L+ G   +G++ DA  L  EM  +G  P+  +Y
Sbjct: 359 HKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTY 418

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           ++L+ +LC+   +EEA      +E S    D+  Y  +I G C++ +++   ++  ++  
Sbjct: 419 SILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSS 478

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ P+  TY  ++    K+  L E  +L  EM    C PD   YN + R   +  E   
Sbjct: 479 KGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLR 538

Query: 437 AVNVWNEMEAASLSPGTDSFVVMV 460
           A+ +  EM A   S   DS  +M+
Sbjct: 539 AIQLLEEMLARGFS--ADSCFLML 560



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 2/330 (0%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           PS+  F  LL    K         +  QM   G  P++   N L++ +  + ++  AF +
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L ++ + G  P+  ++T LI+ LC   K+ EA   F +M   G + +VVTY TLI+G CK
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
                    +L SM Q    P+ + Y  I+ +  K  ++ E   L  +M   G  PD+  
Sbjct: 183 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 242

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y  ++   C L E K    + N+M  + + P    F  +V     +G + EA E    M+
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 302

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            RG+   P   T   L++      +++ A  V+  +V KG   +V ++T  I+       
Sbjct: 303 QRGV--EPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 360

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           + +A     +M   + +P   T+  LM GL
Sbjct: 361 IDKAMYLFEEMCRKEWIPDTKTYNTLMYGL 390


>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
 gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
          Length = 528

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 230/453 (50%), Gaps = 23/453 (5%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQ---HSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
           S D +++ R+L   H+     E  LQ     GV L  GL  +++ R   A  L       
Sbjct: 47  SPDADELARVLLAHHNPFHPAESPLQLLSGGGVSLTGGLLVQLLLRLRGASKLALSLLHA 106

Query: 128 ASKQPNYVHS---YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           A   P++V++    D Y A++ +L++ R+F A W ++ +   +     +   F +L RR+
Sbjct: 107 ARLHPSFVNTRPPPDAYDAVVDALARARQFDAAWRVVVDASADG--AASPRSFAVLARRY 164

Query: 185 ASARMVKKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
            +A M ++A+   D+M  + G E +   F  LLD LCK    K A ++F++ + ++ P+ 
Sbjct: 165 VAAGMTRQAVRAFDDMEAFVGREANSAEFATLLDTLCKYKYPKVATEIFNKRKYKYNPNE 224

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF----- 298
           + +T L+YGWCK  +   A+  L  M D G EP+IV YN LL+G  +   +   +     
Sbjct: 225 KMYTILIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRT 284

Query: 299 -----ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
                ++LKEMR +G +P+  SY++++    R  K E     F  M+  G    V TYT+
Sbjct: 285 VHSAEDVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTS 344

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I       +++    +LD M+  G+ P+  TY      +  + ++   ++L  +M++ G
Sbjct: 345 VIKCLASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPG 404

Query: 414 CV--PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            +  PD+  YN+++ +  KL       ++W++M  +++ P  DS+ +++HGF       E
Sbjct: 405 SLTAPDIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHGFCASQKWRE 464

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           AC++F EM+ +G L  PQ  T + L   L++A 
Sbjct: 465 ACQFFMEMIEKGFL--PQKITFETLYRGLIQAD 495



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 181/407 (44%), Gaps = 16/407 (3%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           P    +  ++DAL +      A ++  +       S R F  L   +   G   +A    
Sbjct: 118 PPPDAYDAVVDALARARQFDAAWRVVVDASADGAASPRSFAVLARRYVAAGMTRQAVRAF 177

Query: 267 VQMKD-AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
             M+   G E +   +  LL    +      A E+  + R+   +PN   YT+LI   C+
Sbjct: 178 DDMEAFVGREANSAEFATLLDTLCKYKYPKVATEIFNK-RKYKYNPNEKMYTILIYGWCK 236

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK----------SRKIDRCYEILDSMI 375
           + + + A +   +M   G E ++VTY  L++G C+           R +    ++L  M 
Sbjct: 237 VNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHSAEDVLKEMR 296

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            RGI P+  +Y  I+  + +  + E CV +   M+  G  P V+ Y  VI+     G L+
Sbjct: 297 DRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCLASCGRLE 356

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  + +EM A  + P   ++      + G+  +  A + + +M   G L+AP   T   
Sbjct: 357 DAETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPGSLTAPDIHTYNI 416

Query: 496 LLNSLLRAQKVEMAKDVWS--CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
           LL   ++  +    KD+WS  C  T G +L+ Y  T+ IH   ++   +EAC + ++M++
Sbjct: 417 LLGMFIKLNRHGSVKDIWSDMCESTVGPDLDSY--TLLIHGFCASQKWREACQFFMEMIE 474

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
              +PQ  TF  L RGL +    +    +  +V + AA+    FK+Y
Sbjct: 475 KGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDEEAAKFGDEFKLY 521


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 236/457 (51%), Gaps = 4/457 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI++  K+R+F     ++ EMR E+   + T  + +L+     +  V++A     +M
Sbjct: 120 YSTLIEAYCKVREFDTAKKVLVEMR-ERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKL 259
             YG  PD F +G L++ LCK+    EA  L DEM     KP++  + +L+ G+ +EG  
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 238

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  ++ +M  AG +P+ + Y+NL+ G  +MG+M  A  LLK+M R    P+  +Y ++
Sbjct: 239 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 298

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+   R    ++A R   EME +G   +V TY+ +I G C+S + ++  ++L+ M  +G+
Sbjct: 299 IEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 358

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN   Y  ++  + ++  +    E+  +M K+  +PD+  YN +I    K+G ++E+  
Sbjct: 359 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 418

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            + +M+   L P   ++  ++HG+L  G L  A +  + M+  GL   P       LL S
Sbjct: 419 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL--KPNDVIYIDLLES 476

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             ++  +E     +  ++ +G  L+   + I IH+L S+G+++ A     ++     +P 
Sbjct: 477 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPD 536

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
              ++ L+ GL K  +R+ A  I +++ K   +  I 
Sbjct: 537 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 573



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 196/419 (46%), Gaps = 13/419 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A   PN V++Y +   +I  L +  +      L+EEM  +  KP      V+  L+  + 
Sbjct: 321 AGISPN-VYTYSI---MIHGLCQSGEPEKASDLLEEMTTKGLKPNAF---VYAPLISGYC 373

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
               V  A E+ D+M K    PD + +  L+  L K   V+E+ K F +M+ER   P+  
Sbjct: 374 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 433

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++ L++G+ K G L  A+ ++ +M D G +P+ V+Y +LL  Y +   +       K M
Sbjct: 434 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 493

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             +G   +   Y +LI  L     ME A R   E+E++G   DV  Y++LISG CK+   
Sbjct: 494 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADR 553

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++ + ILD M ++G+ PN + Y  ++    K  ++     +   +   G VP+   Y  +
Sbjct: 554 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 613

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I  +CK+G++  A  ++NEM A  ++P    + V+  G    G L +A    +EM  RG 
Sbjct: 614 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 673

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            S   +     L++   +  K++    +   I+ +G   N       I  L   G + E
Sbjct: 674 ASISSFNN---LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSE 729



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 202/419 (48%), Gaps = 11/419 (2%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           +  V  +L+  +  +  V+ A EV+  M   G  P   +  C  +AL K+    +A  L 
Sbjct: 46  SPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPS--IRCC--NALLKDLLRADAMALL 101

Query: 233 DEMRE-----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++RE        P +  +++L+  +CK  +   AK VLV+M++ G   + V YN L++G
Sbjct: 102 WKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 161

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             + G + +AF   K+M   G  P+  +Y  LI  LC+  +  EA     EM  +  + +
Sbjct: 162 LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPN 221

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           VV Y  LI GF +    D  ++++  M+  G+ PN++TY +++    K  +++    L+ 
Sbjct: 222 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 281

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M +    PD   YN++I    +    K+A  + +EME A +SP   ++ +M+HG    G
Sbjct: 282 QMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSG 341

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
              +A +  +EM  +GL   P       L++   R   V +A +++  +       ++Y 
Sbjct: 342 EPEKASDLLEEMTTKGL--KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYC 399

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +   I  L   G V+E+  Y   M +  ++P   T++ L+ G  K  + + A ++ +++
Sbjct: 400 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 458



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 165/369 (44%), Gaps = 60/369 (16%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V    +Y  L++S  K      V +  + M  ++  ++   ++ IL+   +S+  +
Sbjct: 464 KPNDV----IYIDLLESYFKSDDIEKVSSTFKSML-DQGVMLDNRIYGILIHNLSSSGNM 518

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           + A  VL E+ K G  PD  V+  L+  LCK +  ++A  + DEM ++   P++  + +L
Sbjct: 519 EAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 578

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK G +  A+ V   +   G  P+ V Y +L+ G  ++G +++AF L  EM   G 
Sbjct: 579 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 638

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+A  Y+VL         +E+A     EM   G  A + ++  L+ GFCK  K+    +
Sbjct: 639 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLK 697

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC----VELM------------------- 406
           +L  ++ RG++PN LT  +I+    +  +L E     VEL                    
Sbjct: 698 LLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMI 757

Query: 407 --------------------GEMRKIGCVPDV----------SNYNVVIRLACKLGELKE 436
                               G + K   + DV          S+Y  ++   C+ G+L E
Sbjct: 758 NQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSE 817

Query: 437 AVNVWNEME 445
           A+N+  EM+
Sbjct: 818 ALNLLKEMD 826



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 154/362 (42%), Gaps = 36/362 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  LSK+ +         +M +E+  L     +  L+  +     ++ A +++  M
Sbjct: 400 YNSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 458

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G +P++ ++  LL++  K+  +++ +  F  M ++      R +  L++     G +
Sbjct: 459 LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 518

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  VL +++  G  PD+ VY++L+SG  +      AF +L EM +KG DPN   Y  L
Sbjct: 519 EAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 578

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+   +  A   F  +   G   + VTYT+LI G CK   I   + + + M+  GI
Sbjct: 579 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 638

Query: 380 LPNQLTY--------------LHIMLAHE--------------------KKEELEECVEL 405
            P+   Y                + L  E                    K+ +++E ++L
Sbjct: 639 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKL 698

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           +  +   G VP+      +I    + G+L E   ++ E++  +       F  +    + 
Sbjct: 699 LHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMIN 758

Query: 466 QG 467
           QG
Sbjct: 759 QG 760



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 155/379 (40%), Gaps = 65/379 (17%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S D+EK+    K           ++   GV+L   +   +I+    +GN+   + + +  
Sbjct: 480 SDDIEKVSSTFK-----------SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEI 528

Query: 131 QPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFV--------- 178
           + N  V    VY +LI  L K       + +++EM K+   P ++     +         
Sbjct: 529 EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDI 588

Query: 179 ---------ILMRRF------------ASARM--VKKAIEVLDEMPKYGCEPDEFVFGCL 215
                    IL +               S ++  +  A  + +EM   G  PD FV+  L
Sbjct: 589 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 648

Query: 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
                    +++A  L +EM  R   S+  F +L+ G+CK GK+ E   +L  +   G  
Sbjct: 649 TTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLV 708

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P+ +   N++SG ++ GK+++   +  E+++K  +  A  ++ L                
Sbjct: 709 PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL---------------- 752

Query: 336 FVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
           F++M   G    DVV    +I   CK   +D+   + D ++ +       +YL I+    
Sbjct: 753 FMDMINQGKIPLDVV--DDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLC 810

Query: 395 KKEELEECVELMGEMRKIG 413
           +K +L E + L+ EM K G
Sbjct: 811 RKGKLSEALNLLKEMDKRG 829


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 224/440 (50%), Gaps = 3/440 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           + +K+  ILKK +S    +  AL  SG+     L  +++ R      + +  ++WA  Q 
Sbjct: 57  NADKLSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKNQT 116

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           +YVH+ ++Y  +I  L K +KF  +W+L+E+M K     ++      +MRR A AR  K 
Sbjct: 117 SYVHTPELYDYMIDILGKFKKFSLMWSLVEQM-KGLNGYVSLATASKVMRRLAKARKYKD 175

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           AI+V   + KYG   D      L+DAL K   V++A   F E ++        F  L++G
Sbjct: 176 AIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHG 235

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +CK    V A+ ++ +M+  GF PD+V Y+  ++ Y +     +   +  EM+ KGC PN
Sbjct: 236 YCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPN 295

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT ++ AL +  ++ EA   + +M+R+GC  D   Y++LI    +S +I   +++ +
Sbjct: 296 VITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFE 355

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++G+  N   Y  ++ +     +    ++L+  M    C PDV  Y  ++++ C+  
Sbjct: 356 DMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRK 415

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +K    + + M   ++S    ++ ++V+ F   G L  AC YF+E V +G++  P   T
Sbjct: 416 SIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMV--PMVKT 473

Query: 493 LKALLNSLLRAQKVEMAKDV 512
            KAL+  L +    EM + +
Sbjct: 474 FKALVEELEQKNMKEMKEKI 493



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 146/318 (45%), Gaps = 9/318 (2%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-DPNANSYTVLIQALCRMEKMEE 331
           G   D    N L+    + G + DA     E   K C   +++S+ +LI   C+      
Sbjct: 187 GASKDREALNVLMDALVKEGDVEDAHSAFLEF--KDCITLDSSSFNILIHGYCKARMFVV 244

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A +   EME+ G   DVV+Y+  I+ +C+ +       + D M ++G  PN +TY  +M 
Sbjct: 245 ARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMH 304

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K  +L E +E+  +M++ GC+PD   Y+ +I +  + G +K+A +V+ +ME   +  
Sbjct: 305 ALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQGVCR 364

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
               +  M+           A +  + M G      P   T   LL    R + +++ K 
Sbjct: 365 NLWVYNTMISSACAHSQGGSALKLLERMEGDS--CKPDVKTYAPLLKMCCRRKSIKLLKF 422

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           + S +      +++  +T+ ++    NG ++ AC Y  + +   ++P   TF  L+  L+
Sbjct: 423 LLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPMVKTFKALVEELE 482

Query: 572 KLYNRQIAAEITEKVRKM 589
               ++   E+ EK+ K+
Sbjct: 483 ----QKNMKEMKEKIEKL 496



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 45/245 (18%), Positives = 101/245 (41%), Gaps = 3/245 (1%)

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  +I    K +K    + +++ M       +  T   +M    K  + ++ +++   + 
Sbjct: 125 YDYMIDILGKFKKFSLMWSLVEQMKGLNGYVSLATASKVMRRLAKARKYKDAIDVFRGIE 184

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           K G   D    NV++    K G++++A + + E +   ++  + SF +++HG+      +
Sbjct: 185 KYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDC-ITLDSSSFNILIHGYCKARMFV 243

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            A +  +EM   G    P   +    + +    +     + V+  +  KGC+ NV  +T 
Sbjct: 244 VARKIMEEMEKHGF--HPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTT 301

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            +H+L     + EA      M     +P    ++ L+  L +    + A ++ E + K  
Sbjct: 302 VMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQG 361

Query: 591 AERQI 595
             R +
Sbjct: 362 VCRNL 366


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 235/457 (51%), Gaps = 4/457 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI++  K+R+F     ++ EMR E+   + T  + +L+     +  V++A     +M
Sbjct: 247 YSTLIEAYCKVREFDTAKKVLVEMR-ERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 305

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKL 259
             YG  PD F +G L++ LCK+    EA  L DEM     KP++  + +L+ G+ +EG  
Sbjct: 306 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 365

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  ++ +M  AG +P+ + Y+NL+ G  +MG+M  A  LLK+M R    P+  +Y ++
Sbjct: 366 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 425

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+   R    ++A R   EME +G   +V TY+ +I G C+S + ++  ++L+ M  +G+
Sbjct: 426 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 485

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN   Y  ++  + ++  +    E+  +M K+  +PD+  YN +I    K+G ++E+  
Sbjct: 486 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 545

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            + +M+   L P   ++  ++HG+L  G L  A +  + M+  GL   P       LL S
Sbjct: 546 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL--KPNDVIYIDLLES 603

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             ++  +E     +  ++ +G  L+   + I IH+L S+G+++ A      +     +P 
Sbjct: 604 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD 663

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
              ++ L+ GL K  +R+ A  I +++ K   +  I 
Sbjct: 664 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 700



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 223/486 (45%), Gaps = 30/486 (6%)

Query: 124 YYMWASKQ--PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLI--------- 172
           ++ W+S Q  P+   + D +  L  SL     F     L+ +M +  P            
Sbjct: 107 FFYWSSPQLAPS-APAPDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRA 165

Query: 173 -------TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
                  +  V  +L+  +  +  V+ A EV+  M   G  P   +  C  +AL K+   
Sbjct: 166 LSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPS--IRCC--NALLKDLLR 221

Query: 226 KEAAKLFDEMRE-----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
            +A  L  ++RE        P +  +++L+  +CK  +   AK VLV+M++ G   + V 
Sbjct: 222 ADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVT 281

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN L++G  + G + +AF   K+M   G  P+  +Y  LI  LC+  +  EA     EM 
Sbjct: 282 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            +  + +VV Y  LI GF +    D  ++++  M+  G+ PN++TY +++    K  +++
Sbjct: 342 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 401

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
               L+ +M +    PD   YN++I    +    K+A  + +EME A +SP   ++ +M+
Sbjct: 402 RASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMI 461

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           HG    G   +A +  +EM  +GL   P       L++   R   V +A +++  +    
Sbjct: 462 HGLCQSGEPEKASDLLEEMTTKGL--KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
              ++Y +   I  L   G V+E+  Y   M +  ++P   T++ L+ G  K  + + A 
Sbjct: 520 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 579

Query: 581 EITEKV 586
           ++ +++
Sbjct: 580 QLVQRM 585



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 195/419 (46%), Gaps = 13/419 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A   PN V++Y +   +I  L +  +      L+EEM  +  KP      V+  L+  + 
Sbjct: 448 AGISPN-VYTYSI---MIHGLCQSGEPEKASDLLEEMTTKGLKPNAF---VYAPLISGYC 500

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
               V  A E+ D+M K    PD + +  L+  L K   V+E+ K F +M+ER   P+  
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 560

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++ L++G+ K G L  A+ ++ +M D G +P+ V+Y +LL  Y +   +       K M
Sbjct: 561 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 620

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             +G   +   Y +LI  L     ME A R    +E++G   DV  Y++LISG CK+   
Sbjct: 621 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR 680

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++ + ILD M ++G+ PN + Y  ++    K  ++     +   +   G VP+   Y  +
Sbjct: 681 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 740

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I  +CK+G++  A  ++NEM A  ++P    + V+  G    G L +A    +EM  RG 
Sbjct: 741 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 800

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            S   +     L++   +  K++    +   I+ +G   N       I  L   G + E
Sbjct: 801 ASISSFNN---LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSE 856



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 179/374 (47%), Gaps = 27/374 (7%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V    +Y  L++S  K      V +  + M  ++  ++   ++ IL+   +S+  +
Sbjct: 591 KPNDV----IYIDLLESYFKSDDIEKVSSTFKSML-DQGVMLDNRIYGILIHNLSSSGNM 645

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           + A  VL  + K G  PD  V+  L+  LCK +  ++A  + DEM ++   P++  + +L
Sbjct: 646 EAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 705

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK G +  A+ V   +   G  P+ V Y +L+ G  ++G +++AF L  EM   G 
Sbjct: 706 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 765

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+A  Y+VL         +E+A     EM   G  A + ++  L+ GFCK  K+    +
Sbjct: 766 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLK 824

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC----VELMG---------------EMR 410
           +L  ++ RG++PN LT  +I+    +  +L E     VEL                 +M 
Sbjct: 825 LLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMI 884

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             G +P +   + +IR  CK G L +A+ + + + A S   G  S++ +V     +G L 
Sbjct: 885 NQGKIP-LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLS 943

Query: 471 EACEYFKEMVGRGL 484
           EA    KEM  RG+
Sbjct: 944 EALNLLKEMDKRGI 957



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 168/409 (41%), Gaps = 63/409 (15%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S D+EK+    K           ++   GV+L   +   +I+    +GN+   + + +  
Sbjct: 607 SDDIEKVSSTFK-----------SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI 655

Query: 131 QPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFV--------- 178
           + N  V    VY +LI  L K       + +++EM K+   P ++     +         
Sbjct: 656 EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDI 715

Query: 179 ---------ILMRRF------------ASARM--VKKAIEVLDEMPKYGCEPDEFVFGCL 215
                    IL +               S ++  +  A  + +EM   G  PD FV+  L
Sbjct: 716 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 775

Query: 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
                    +++A  L +EM  R   S+  F +L+ G+CK GK+ E   +L  +   G  
Sbjct: 776 TTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLV 835

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P+ +   N++SG ++ GK+++   +  E+++K  +  A  ++ L         M+  N+ 
Sbjct: 836 PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLF--------MDMINQG 887

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
            + +       DVV    +I   CK   +D+   + D ++ +       +YL I+    +
Sbjct: 888 KIPL-------DVV--DDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCR 938

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           K +L E + L+ EM K G  P  +   +++      G ++E   V + M
Sbjct: 939 KGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNM 987


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 218/441 (49%), Gaps = 30/441 (6%)

Query: 84  FHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGY------RYYMWASKQPNYVHS 137
           FH     L+L L   GV L  GL  +++ R   A  L        R +   S  PN    
Sbjct: 59  FHPSESPLQL-LSGGGVSLSQGLLVQILLRLRGASKLALSLLNAVRLHPSVSSPPNA--- 114

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            D Y A++ +L +  +F A W L+ E   +     T   F +L RR+ +A + ++A+   
Sbjct: 115 -DAYDAVVDALGRAHQFDAAWRLVVEAAADGAA--TPRTFAVLARRYVAAGLTRQAVRAF 171

Query: 198 DEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           D+M  + G EPD   F  LLD LCK    K A ++F++ + +++P+ + +T L+YGWCK 
Sbjct: 172 DDMEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYKYEPNEKMYTILIYGWCKV 231

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM----------TDAFELLKEMRR 306
            +   A+  L  M D G EP+IV YN LL+G  +   +            A  LLKEM  
Sbjct: 232 NRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDRTVNAAENLLKEMND 291

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +G +P+  SY++++    R  K E     F  M+  G    V TYT++I       +++ 
Sbjct: 292 RGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLED 351

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC---VPDVSNYNV 423
              +L  M+  G+ P+  TY      +  ++++   +EL  +M K  C    PD+ +YN+
Sbjct: 352 AESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKM-KAPCSPTAPDIHSYNI 410

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++ +  KL   +  + +WN+M   ++ P  DS+ ++VHGF  +    EAC++F EM+ +G
Sbjct: 411 LLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREACQFFMEMIEKG 470

Query: 484 LLSAPQYGTLKALLNSLLRAQ 504
            L  PQ  T +     L++A 
Sbjct: 471 FL--PQKITFETPYRGLIQAD 489



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 176/403 (43%), Gaps = 12/403 (2%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL+R   ++++    +  +   P     P+   +  ++DAL +      A +L  E    
Sbjct: 84  ILLRLRGASKLALSLLNAVRLHPSVSSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAAD 143

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-AGFEPDIVVYNNLLSGYAQMGKMTDA 297
              + R F  L   +   G   +A      M+   G EPD   +  LL    +      A
Sbjct: 144 GAATPRTFAVLARRYVAAGLTRQAVRAFDDMEAFLGREPDAQEFTTLLDTLCKYKYPKVA 203

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E+  + R+   +PN   YT+LI   C++ + + A +   +M   G E ++VTY  L++G
Sbjct: 204 VEVFNK-RKYKYEPNEKMYTILIYGWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNG 262

Query: 358 FCK----------SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
            C+           R ++    +L  M  RGI P+  +Y  I+  + +  + E C+ +  
Sbjct: 263 ICRHASLHPDNRFDRTVNAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFR 322

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            M+  G  P V+ Y  VI+     G L++A ++  EM +  + P   ++      + G+ 
Sbjct: 323 SMKDRGICPTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRK 382

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            +  A E + +M      +AP   +   LL   ++  + E   ++W+ +  +    ++ +
Sbjct: 383 DVSGALELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDS 442

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +T+ +H   +    +EAC + ++M++   +PQ  TF    RGL
Sbjct: 443 YTLLVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETPYRGL 485


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 201/391 (51%), Gaps = 8/391 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +   + S++KM+++  V  L  +M       +T  V+   IL+        V  A+ V  
Sbjct: 96  FGKFLGSIAKMKQYSTVVYLCNQMDLFG---VTHTVYSLNILINCLCRLNHVDFAVSVWG 152

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K G +PD   F  L++ +C    +K A +L++EM R   +P +  + +L+ G C  G
Sbjct: 153 KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG 212

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A +V  +M+  G +P++V YN ++    +   + DA + L EM  +G  P+A +Y 
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYN 272

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  LC + ++ EA R F  ME++GC+ DVVTY  +I    K R ++   + L  M+ +
Sbjct: 273 SIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQ 332

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  I+       +L E + L  +M + GC PDV  YN +I   CK   + +A
Sbjct: 333 GIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDA 392

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +   +EM    + P   ++  ++HGF   G L EA + FKEMVGR ++  P   T   L+
Sbjct: 393 MEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVM--PNTLTFSILV 450

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           + L +   V  A+ V+  +  KG E N+Y +
Sbjct: 451 DGLCQEGMVSEARWVFETMTEKGVEPNIYTY 481



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 225/471 (47%), Gaps = 17/471 (3%)

Query: 110 VINRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +IN   ++GN     +++   +     PN V     Y  +I SL K R        + EM
Sbjct: 204 LINGLCNSGNTNMAVHVFKKMEQNGCKPNVV----TYNTIIDSLCKDRLVNDAMDFLSEM 259

Query: 165 --RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
             R   P  IT    V           + +A  +   M + GC+PD   +  ++D+L K+
Sbjct: 260 VGRGIPPDAITYNSIV---HGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKD 316

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
             V +AA    EM ++   P +  +T++L+G C  G+L EA  +  +M+  G +PD+V Y
Sbjct: 317 RLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAY 376

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++    +   + DA E L EM  +G  PNA +Y+ ++   C + +++EA + F EM  
Sbjct: 377 NTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVG 436

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
                + +T++ L+ G C+   +     + ++M ++G+ PN  TY  +M  +  + ++ E
Sbjct: 437 RNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNE 496

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             ++   M   GC PD+ +YN++I   C    + +A  +  +M    L+P T ++  ++ 
Sbjct: 497 ARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMK 556

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G    G L++A E FK+M   G+L  P   T   LLN L +   ++ A  ++  +  K  
Sbjct: 557 GLCYVGRLLDAQELFKKMCSSGML--PTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKL 614

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           E ++  +TI I  +F  G ++ A      +    + P   T+  +++GL K
Sbjct: 615 EPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLK 665



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 219/445 (49%), Gaps = 12/445 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASAR 188
           QP+ +     +  LI  +    K      L  EM +   +P +I+   +  L+    ++ 
Sbjct: 160 QPDVI----TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVIS---YNTLINGLCNSG 212

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
               A+ V  +M + GC+P+   +  ++D+LCK+  V +A     EM  R   P    + 
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYN 272

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S+++G C  G+L EA  +  +M+  G +PD+V YN ++    +   + DA + L EM  +
Sbjct: 273 SIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQ 332

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +YT ++  LC + ++ EA R F +ME+ GC+ DVV Y T+I   CK R ++  
Sbjct: 333 GIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDA 392

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E L  M+ RGI PN +TY  I+       +L+E  +L  EM     +P+   +++++  
Sbjct: 393 MEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDG 452

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G + EA  V+  M    + P   ++  +++G+  +  + EA + F+ MVG+G   A
Sbjct: 453 LCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKG--CA 510

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   +   L+N    +++++ AK + + +  K    N   +   +  L   G + +A   
Sbjct: 511 PDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQEL 570

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
              M  + ++P   T++ L+ GL K
Sbjct: 571 FKKMCSSGMLPTLMTYSILLNGLCK 595



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 170/341 (49%), Gaps = 6/341 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++  L  + +      L ++M ++  KP ++    +  ++      R+V  A+E L 
Sbjct: 341 YTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVA---YNTIIDSLCKDRLVNDAMEFLS 397

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  +L   C    + EA +LF EM  R   P+   F+ L+ G C+EG
Sbjct: 398 EMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEG 457

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EA++V   M + G EP+I  YN L++GY    KM +A ++ + M  KGC P+ +SY 
Sbjct: 458 MVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYN 517

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C   +M++A     +M       + VTY T++ G C   ++    E+   M   
Sbjct: 518 ILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS 577

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LP  +TY  ++    K   L+E ++L   M++    PD+  Y ++I      G+L+ A
Sbjct: 578 GMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVA 637

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +++++ A  + P   ++ VM+ G L +G   EA E F++
Sbjct: 638 KGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRK 678



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 173/378 (45%), Gaps = 4/378 (1%)

Query: 224 SVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           SV +A   F  M R   +PS+  F   L    K  +     Y+  QM   G    +   N
Sbjct: 73  SVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLN 132

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++   ++  +  A  +  +M + G  P+  ++T LI  +C   K++ A   + EM RS
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G E DV++Y TLI+G C S   +    +   M Q G  PN +TY  I+ +  K   + + 
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDA 252

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++ + EM   G  PD   YN ++   C LG+L EA  ++  ME     P   ++ +++  
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDS 312

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                 + +A ++  EMV +G+   P   T   +L+ L    ++  A  ++  +  KGC+
Sbjct: 313 LYKDRLVNDAADFLSEMVDQGI--PPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCK 370

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            +V A+   I SL  +  V +A  +  +M+D  + P   T++ ++ G   L     A ++
Sbjct: 371 PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQL 430

Query: 583 -TEKVRKMAAERQITFKM 599
             E V +      +TF +
Sbjct: 431 FKEMVGRNVMPNTLTFSI 448



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 9/172 (5%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKK 192
           +HSY++   LI      R+     AL+ +M  +K  P  +T   +  +M+       +  
Sbjct: 513 LHSYNI---LINGYCNSRRMDKAKALLTQMSVKKLTPNTVT---YNTIMKGLCYVGRLLD 566

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A E+  +M   G  P    +  LL+ LCK+  + EA KLF  M+E+  +P +  +T L+ 
Sbjct: 567 AQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIE 626

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
           G    GKL  AK +  ++   G +P    YN ++ G  + G   +A+EL ++
Sbjct: 627 GMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRK 678


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 216/434 (49%), Gaps = 10/434 (2%)

Query: 92  ELALQHSGVVLRPGLTERVINRCGDAGN-----LGYRYYMWASKQPNYVHSYDVYRALIK 146
           +++  HS   + P +   VI + G   +         ++ WA+    + HS   Y  +I 
Sbjct: 100 QISAPHS---VSPAVVRYVIEKSGAVRHGIPFLPALAFFNWATAGEGFEHSPQPYNEMID 156

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
              K+++FG  W L++ M+    + IT   F +L+RR+  A +  +A+   + M  YGC 
Sbjct: 157 LAGKVKQFGLAWYLIDLMKARNVE-ITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCN 215

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
            D   F  ++  LCK     EA   FD ++ +F+P +  +TSL++GWC+ G + EA+ V 
Sbjct: 216 ADIIAFSNVISILCKKRRAVEAQSFFDNLKHKFEPDVIVYTSLVHGWCRAGDISEAESVF 275

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +MK AG  P++  Y+ ++    + G++T A ++  EM   GC+PN+ ++  LI+   R 
Sbjct: 276 REMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRA 335

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            + E+  + + +M+R  C AD++TY  LI   CK   +    ++L+SM +    PN  ++
Sbjct: 336 GRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSF 395

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             I     K +++     +   M+++GC P+   YN+++R+            +  EM+ 
Sbjct: 396 NPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDE 455

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             + P  +++  ++  + G G    A  +F+EM+    +  P     K +L  L +A ++
Sbjct: 456 EEVEPNFNTYRELIALYCGMGHWNHAYMFFREMIDEKCIK-PSMPLYKMVLEELRKAGQL 514

Query: 507 EMAKDVWSCIVTKG 520
           +  +++   +V +G
Sbjct: 515 KKHEELVDKMVERG 528



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 122/278 (43%), Gaps = 13/278 (4%)

Query: 113 RCGDAGNLG--YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--K 168
           R GD       +R    A   PN V++Y +   +I +L +  +      +  EM      
Sbjct: 264 RAGDISEAESVFREMKMAGISPN-VYTYSI---VIDALCRSGQITRAHDVFAEMLDAGCN 319

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P  +T   F  L+R    A   +K ++V ++M +  C  D   +  L++  CK+ ++ EA
Sbjct: 320 PNSVT---FNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEA 376

Query: 229 AKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            K+ + M +    P+   F  +     K   +  A  +  +MK+ G +P+ V YN L+  
Sbjct: 377 IKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRM 436

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC-EA 346
           +A        F+L KEM  +  +PN N+Y  LI   C M     A   F EM    C + 
Sbjct: 437 FAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREMIDEKCIKP 496

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
            +  Y  ++    K+ ++ +  E++D M++RG     L
Sbjct: 497 SMPLYKMVLEELRKAGQLKKHEELVDKMVERGFASRNL 534



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 38/226 (16%)

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G E     Y  +I    K ++    + ++D M  R +    +T+  ++  + +     E 
Sbjct: 143 GFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEA 202

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           V     M   GC  D+  ++ VI + CK     EA + ++ ++     P    +  +VHG
Sbjct: 203 VHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKH-KFEPDVIVYTSLVHG 261

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           +   G + EA   F+EM                           +MA          G  
Sbjct: 262 WCRAGDISEAESVFREM---------------------------KMA----------GIS 284

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
            NVY ++I I +L  +G +  A     +M+DA   P   TF  L+R
Sbjct: 285 PNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIR 330


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 228/461 (49%), Gaps = 13/461 (2%)

Query: 87  RLPKLELALQHSGVVLRP--GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRAL 144
           R  +L+ AL+  G   RP  G    +I +   +G       + A+  P+ +     Y A+
Sbjct: 77  RRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVM----AYNAM 132

Query: 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG 204
           +       +  A   L+ EM  E P   T   +  L+R          A+ VLDEM +  
Sbjct: 133 VAGYCGAGQLDAARRLVAEMPVE-PDAYT---YNTLIRGLCGRGRTANALAVLDEMLRRR 188

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAK 263
           C PD   +  LL+A CK S  K+A KL DEMR++   P +  +  ++ G C+EG++ +A 
Sbjct: 189 CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI 248

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
             L  +   G EP+ V YN +L G     +  DA EL+ EM +KGC PN  ++ +LI  L
Sbjct: 249 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFL 308

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           CR   +E A     ++ + GC  + ++Y  L+  FCK +K+D+    LD M+ RG  P+ 
Sbjct: 309 CRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 368

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           ++Y  ++ A  +  E++  VEL+ +++  GC P + +YN VI    K G+ KEA+ + NE
Sbjct: 369 VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 428

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M +  L P   ++  +  G   +  + +A   F ++   G+   P      A++  L + 
Sbjct: 429 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI--RPNTVLYNAIILGLCKR 486

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           ++   A D+++ ++  GC  N   +TI I  L   G +KEA
Sbjct: 487 RETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 527



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 188/388 (48%), Gaps = 6/388 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
           +  A  +  A  ++ EMP    EPD + +  L+  LC       A  + DEM R R  P 
Sbjct: 136 YCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPD 192

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +T LL   CK     +A  +L +M+D G  PDIV YN +++G  Q G++ DA E LK
Sbjct: 193 VVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLK 252

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            +   GC+PN  SY ++++ LC  E+ E+A     EM + GC  +VVT+  LIS  C+  
Sbjct: 253 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 312

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            ++   E+L+ + + G  PN L+Y  ++ A  K++++++ +  +  M   GC PD+ +YN
Sbjct: 313 LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 372

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++   C+ GE+  AV + ++++    +P   S+  ++ G    G   EA E   EMV +
Sbjct: 373 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 432

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P   T   +   L R  ++E A   +  +   G   N   +   I  L       
Sbjct: 433 GL--QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 490

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
            A      M+    MP   T+  L+ GL
Sbjct: 491 SAIDLFAYMIGNGCMPNESTYTILIEGL 518



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 180/364 (49%), Gaps = 9/364 (2%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           PD      L+  L  +    EA ++         P +  + +++ G+C  G+L  A+ ++
Sbjct: 94  PDAGTCAALIKKLSASGRTAEARRVL----AACGPDVMAYNAMVAGYCGAGQLDAARRLV 149

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M     EPD   YN L+ G    G+  +A  +L EM R+ C P+  +YT+L++A C+ 
Sbjct: 150 AEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKR 206

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
              ++A +   EM   GC  D+VTY  +++G C+  ++D   E L ++   G  PN ++Y
Sbjct: 207 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 266

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++      E  E+  ELMGEM + GC P+V  +N++I   C+ G ++ A+ V  ++  
Sbjct: 267 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 326

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
              +P + S+  ++H F  Q  + +A  +   MV RG    P   +   LL +L R+ +V
Sbjct: 327 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY--PDIVSYNTLLTALCRSGEV 384

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           ++A ++   +  KGC   + ++   I  L   G  KEA     +M+   + P   T++ +
Sbjct: 385 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 444

Query: 567 MRGL 570
             GL
Sbjct: 445 AAGL 448



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 173/348 (49%), Gaps = 6/348 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++  K   +     L++EMR +   P ++T  V V           V  AIE L 
Sbjct: 196 YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV---NGICQEGRVDDAIEFLK 252

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +P YGCEP+   +  +L  LC     ++A +L  EM ++   P++  F  L+   C++G
Sbjct: 253 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 312

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  VL Q+   G  P+ + YN LL  + +  KM  A   L  M  +GC P+  SY 
Sbjct: 313 LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 372

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALCR  +++ A     +++  GC   +++Y T+I G  K+ K     E+L+ M+ +
Sbjct: 373 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 432

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  I     +++ +E+ +   G+++ +G  P+   YN +I   CK  E   A
Sbjct: 433 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 492

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           ++++  M      P   ++ +++ G   +G + EA +   E+  RG++
Sbjct: 493 IDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 45/292 (15%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y  ++K L    ++     LM EM ++   P ++T   F +L+       
Sbjct: 260 EPNTVS----YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT---FNMLISFLCRKG 312

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVF--------------------------GC-------- 214
           +V+ A+EVL+++PKYGC P+   +                          GC        
Sbjct: 313 LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 372

Query: 215 -LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
            LL ALC++  V  A +L  +++++   P L  + +++ G  K GK  EA  +L +M   
Sbjct: 373 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 432

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G +PDI+ Y+ + +G  +  ++ DA     +++  G  PN   Y  +I  LC+  +   A
Sbjct: 433 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 492

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
              F  M  +GC  +  TYT LI G      I    ++LD +  RG++   L
Sbjct: 493 IDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSL 544


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 231/468 (49%), Gaps = 42/468 (8%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S+D + + +IL   H+    +E +LQ  G+ L P L  + + R      +    +  +  
Sbjct: 54  SNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHNSKIALSLFHHSLS 113

Query: 131 QPNYVHSYD---------------------VYRALIKSLSKMRKFGAVWALMEEM--RKE 167
            P    S D                      Y  +I  L+K+R+F   W L+ EM  R  
Sbjct: 114 LPPT--STDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDVCWQLIVEMDQRNV 171

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP-DEFVFGCLLDALCKNSSVK 226
           KP   T+E F +L+RR  +A + ++AI   D+M  +  EP +E  F  LLD LCK   VK
Sbjct: 172 KP---TSETFFVLIRRLVAAGLTRQAIRAFDDMESFVSEPVNETHFCFLLDTLCKYGYVK 228

Query: 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
              ++F++ + RF P+++ +T L+YGWCK G++  A+  L +  + G E  +V YN LL+
Sbjct: 229 VGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLKETGERGIEATVVTYNVLLN 288

Query: 287 GYAQMGKM----------TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           G  +   +          T A  L  EMR +G +P+  S+++++    R  K E      
Sbjct: 289 GICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKL 348

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             M+  G    VVTYT+++   C   +I+   E+L  M++ G+    +TY      +  +
Sbjct: 349 KLMKEKGICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGR 408

Query: 397 EELEECVELMGEMRKIGCVP-DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           ++ E  ++L  +MR+ G     + +YN+++R+   L  L     +W +++++ L P  DS
Sbjct: 409 KDAESALKLYKKMREDGLGSLGLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDS 468

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           + +++HG   +    EAC++F EM+ +GLL  PQ  T + L   L+++
Sbjct: 469 YTMLIHGLCEKEKWREACKFFVEMIEKGLL--PQKVTFETLYKGLIQS 514



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 152/372 (40%), Gaps = 81/372 (21%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V YN ++   A++ +    ++L+ EM ++   P + ++ VLI+ L       +A RAF +
Sbjct: 141 VTYNLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDD 200

Query: 339 ME-------------------------RSGCE----------ADVVTYTTLISGFCKSRK 363
           ME                         + G E           +V  YT LI G+CK  +
Sbjct: 201 MESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGR 260

Query: 364 IDRC------------------YEIL---------------------------DSMIQRG 378
           ID                    Y +L                           D M +RG
Sbjct: 261 IDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERG 320

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P+  ++  ++  + +  + E  ++ +  M++ G  P V  Y  V++  C  G +++A 
Sbjct: 321 IEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAE 380

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  EM    +S    ++      ++G+     A + +K+M   GL S   + +   LL 
Sbjct: 381 ELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGLGSLGLH-SYNILLR 439

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
             +   ++++  ++W  + + G   ++ ++T+ IH L      +EAC + ++M++  ++P
Sbjct: 440 MFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWREACKFFVEMIEKGLLP 499

Query: 559 QPDTFAKLMRGL 570
           Q  TF  L +GL
Sbjct: 500 QKVTFETLYKGL 511



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 127/289 (43%), Gaps = 23/289 (7%)

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           VTY  +I    K R+ D C++++  M QR + P   T+  ++          + +    +
Sbjct: 141 VTYNLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDD 200

Query: 409 MRKIGCVP-DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           M      P + +++  ++   CK G +K  V ++N+      SP    + V+++G+   G
Sbjct: 201 MESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNK-RKHRFSPNVKMYTVLIYGWCKIG 259

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR----------AQKVEMAKDVWSCIV 517
            +  A  + KE   RG+ +     T   LLN + R           + + +A++++  + 
Sbjct: 260 RIDMAERFLKETGERGIEAT--VVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMR 317

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM-DADVMPQPDTFAKLMRGLKKLYNR 576
            +G E +V +++I +H ++S  H  E     L +M +  + P   T+  +++ L      
Sbjct: 318 ERGIEPDVTSFSIVLH-VYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRI 376

Query: 577 QIAAEIT-EKVRKMAAERQITFK------MYKRRGERDLKEKAKKQVDG 618
           + A E+  E VR   +   +T+       M ++  E  LK   K + DG
Sbjct: 377 EDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDG 425


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 229/511 (44%), Gaps = 43/511 (8%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW 158
           G  L P +  RV+ +  D  +   +++ W + QP Y HS      L+ +  + +K    +
Sbjct: 94  GGYLVPSVVGRVLQQLDDL-DKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAY 152

Query: 159 ALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
            L +  R     P  IT   +  L+  F  AR  ++A  +LDEM K G  P   V+  ++
Sbjct: 153 DLFKNHRCGLCSPDSIT---YSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTII 209

Query: 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
             LC N  V  A   + +M+    PS+  +T L+   CK  ++ +A  +L  M +AG  P
Sbjct: 210 KGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAP 269

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           ++V YN L++G+ ++G M +A  L  +M    C P+  +Y +LI   C+ E+ ++  +  
Sbjct: 270 NVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLL 329

Query: 337 VEMERSGCEADVVTYTTL-----------------------------------ISGFCKS 361
            EM + GCE + +TY TL                                   I  FCK 
Sbjct: 330 QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKV 389

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            ++D  YE+   M  RG LP+  TY  ++    +   +++  +L+  M + GC PDV  Y
Sbjct: 390 GQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 449

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N ++   CK  ++ EA  V+  +          +   ++ G      L +A +  +EM  
Sbjct: 450 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 509

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            G  SAP       L++   +A +++ +   +S ++ KGC   V  ++I I  L  +  V
Sbjct: 510 NG--SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARV 567

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           ++ C     M++  V P    +  ++ GL K
Sbjct: 568 RDGCMLLKTMLERGVTPDAIVYTSVIDGLCK 598



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 201/397 (50%), Gaps = 12/397 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           +PN++     Y  L+ SL K  K+   + L + M  R  KP   T   F +++  F    
Sbjct: 338 EPNFI----TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFT---FNLMIDMFCKVG 390

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +  A E+   M   GC PD + +  ++   C+ + + +A +L + M E    P +  + 
Sbjct: 391 QLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYN 450

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++ G CK  ++ EA  V   +++ G+  D+V  + L+ G  +  ++ DA +LL+EM R 
Sbjct: 451 SIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERN 510

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +YT+LI   C+ ++++++   F EM   GC   V+TY+ +I   CKS ++   
Sbjct: 511 GSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDG 570

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L +M++RG+ P+ + Y  ++    K +  +E  EL   M++ GC P V  YNV++  
Sbjct: 571 CMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDK 630

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK+  L EA+++   ME+    P T ++  +  GF       +A   F+ M  RG    
Sbjct: 631 LCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPT 690

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           P   +L  LL  L+  +K++ A ++W   +  G +++
Sbjct: 691 PFMYSL--LLTKLVAEEKMDQAMEIWEEALEAGADVD 725



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 3/217 (1%)

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           Q G   ++ T   ++ A  +K++ +E  +L    R   C PD   Y+ +I   CK  + +
Sbjct: 125 QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQ 184

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  + +EME   + P    +  ++ G    G +  A  ++++M       AP   T   
Sbjct: 185 QAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN---CAPSVITYTI 241

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+++L ++ ++  A  +   ++  GC  NV  +   I+     G++ EA      M++  
Sbjct: 242 LVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS 301

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             P   T+  L+ G  K    Q  A++ +++ K   E
Sbjct: 302 CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 338


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 238/477 (49%), Gaps = 25/477 (5%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           E S D E I ++L   H+    +E +LQ +G+ L P L  + + R      +   ++ + 
Sbjct: 36  EPSSDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYL 95

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
              P+   +   +  +I  L ++R+F  V  L+ EM +  P     E F+IL++R  +A 
Sbjct: 96  RSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQTSP-----ETFLILVKRLIAAG 150

Query: 189 MVKKAIEVLDEMPKYGCEPDEF---VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH 245
           + ++A+   D+ P +  E   F    FG LLD LCK    K A  +F+E +E F    + 
Sbjct: 151 LTRQAVRAFDDAPCF-LENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKV 209

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM----------T 295
           +T L+ GWCK  ++  A+  LV+M ++G EP++V YN LL+G  +   +           
Sbjct: 210 YTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVR 269

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A ++  EMR++G +P+  S+++++    R  K E        M+  G    + TYT+++
Sbjct: 270 NAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVV 329

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
              C   +++   E+L++M++ GI P+  TY      ++ +++    + L  +M+   C 
Sbjct: 330 KCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCK 389

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P    YNV++     LG+++    +W++++A+   P  DS+  +VHG   +    EAC Y
Sbjct: 390 PSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGY 449

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKV----EMAKDVWSCIVTKGCELNVYAW 528
           F EM+ RG L  PQ  T + L   L+++ K+     + K +    +T G E   Y +
Sbjct: 450 FVEMIERGFL--PQKLTFETLYKGLIQSNKMRTWRRLKKKLDEESITFGSEFQRYPF 504


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 234/475 (49%), Gaps = 46/475 (9%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V    +Y+ LI SLSK  +      L+EEM      +   E F  ++        + 
Sbjct: 244 PNSV----IYQTLIHSLSKCNRVNEALQLLEEMFLMG-CVPDAETFNDVILGLCKFDRIN 298

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251
           +A ++++ M   G  PD+  +G L++ LCK   V  A  LF  +    KP+   F +L++
Sbjct: 299 EAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP---KPTSVIFNTLIH 355

Query: 252 GWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           G+   G+L +AK VL  M  + G  PD+  YN+L+ GY + G +  A E+L++MR KGC 
Sbjct: 356 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCK 415

Query: 311 PNANSYTVLIQALCRMEKMEEANR-----------------------------------A 335
           PN  SYT+L+   C++ K++EA                                      
Sbjct: 416 PNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 475

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F EM R GC+ DV T+ +LISG C+  +I     +L  MI  G++ N +TY  ++ A  +
Sbjct: 476 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 535

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           + E++E  +L+ EM   G + D   YN +I+  C+ GE+ +A +++ +M    L P + S
Sbjct: 536 RGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSIS 595

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
             ++++G    G + EA E+ KEMV RG  S P   T  +L+N L RA ++E    ++  
Sbjct: 596 CNILINGLCRSGMVEEAVEFQKEMVLRG--STPDIVTFNSLINGLCRAGRIEDGLTMFRK 653

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +  +G   +   +   +  L   G V +AC    + ++   +P   T++ L++ L
Sbjct: 654 LQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 225/480 (46%), Gaps = 37/480 (7%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + W   Q  Y HS+DVY+ LI  L    +F  +  L+ +M+ E   +    +F+ +MR +
Sbjct: 92  FSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEG-IVFKESLFISIMRDY 150

Query: 185 ASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
             A    +   ++ EM   Y CEP    +  +L+ L   +  K AA +F +M  R   P+
Sbjct: 151 DKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPT 210

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L  F  ++   C   ++  A  VL  M   G  P+ V+Y  L+   ++  ++ +A +LL+
Sbjct: 211 LFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 270

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   GC P+A ++  +I  LC+ +++ EA +    M   G   D +TY  L++G CK  
Sbjct: 271 EMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIG 330

Query: 363 KIDRCYEIL--------------------------------DSMIQRGILPNQLTYLHIM 390
           ++D   ++                                 D +   GI+P+  TY  ++
Sbjct: 331 RVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 390

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
             + KK  +   +E++ +MR  GC P+V +Y +++   CKLG++ EA N+ NEM A  L 
Sbjct: 391 YGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLK 450

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P T  F  ++  F  +  + EA E F+EM  +G    P   T  +L++ L    +++ A 
Sbjct: 451 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHAL 508

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +   ++++G   N   +   I++    G +KEA     +M+    +    T+  L++GL
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGL 568



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 165/332 (49%), Gaps = 6/332 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K    G    ++ +MR +  KP + +   + IL+  F     + +A  +L+
Sbjct: 386 YNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYS---YTILVDGFCKLGKIDEAYNLLN 442

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +P+   F CL+ A CK   + EA ++F EM R+  KP +  F SL+ G C+  
Sbjct: 443 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 502

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A ++L  M   G   + V YN L++ + + G++ +A +L+ EM  +G   +  +Y 
Sbjct: 503 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYN 562

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+ LCR  ++++A   F +M R G     ++   LI+G C+S  ++   E    M+ R
Sbjct: 563 SLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLR 622

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ +T+  ++    +   +E+ + +  +++  G  PD   YN ++   CK G + +A
Sbjct: 623 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDA 682

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
             + +E       P   ++ +++   + Q  L
Sbjct: 683 CLLLDEGIEDGFVPNDRTWSILLQSLVPQETL 714



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 49/310 (15%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V+SY +   L+    K+ K    + L+ EM  +  KP  +    F  L+  F    
Sbjct: 415 KPN-VYSYTI---LVDGFCKLGKIDEAYNLLNEMSADGLKPNTVG---FNCLISAFCKEH 467

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC---------------------------- 220
            + +A+E+  EMP+ GC+PD + F  L+  LC                            
Sbjct: 468 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 527

Query: 221 -------KNSSVKEAAKLFDEMRERFKPSLRH---FTSLLYGWCKEGKLVEAKYVLVQMK 270
                  +   +KEA KL +EM   F+ SL     + SL+ G C+ G++ +A+ +  +M 
Sbjct: 528 TLINAFLRRGEIKEARKLVNEMV--FQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKML 585

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
             G  P  +  N L++G  + G + +A E  KEM  +G  P+  ++  LI  LCR  ++E
Sbjct: 586 RDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 645

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +    F +++  G   D VTY TL+S  CK   +     +LD  I+ G +PN  T+  ++
Sbjct: 646 DGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILL 705

Query: 391 LAHEKKEELE 400
            +   +E L+
Sbjct: 706 QSLVPQETLD 715



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 154/377 (40%), Gaps = 35/377 (9%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           ++ S   +  L+      G+      +L+QMKD G      ++ +++  Y + G      
Sbjct: 101 YRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTT 160

Query: 299 ELLKEMRR-KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            L+ EMR    C+P   SY V+++ L      + A   F +M        + T+  ++  
Sbjct: 161 RLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKA 220

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C   ++D    +L  M + G +PN + Y  ++ +  K   + E ++L+ EM  +GCVPD
Sbjct: 221 LCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPD 280

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS---------------------- 455
              +N VI   CK   + EA  + N M     +P   +                      
Sbjct: 281 AETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFY 340

Query: 456 ---------FVVMVHGFLGQGCLIEACEYFKEMV-GRGLLSAPQYGTLKALLNSLLRAQK 505
                    F  ++HGF+  G L +A     +MV   G++  P   T  +L+    +   
Sbjct: 341 RIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV--PDVCTYNSLIYGYWKKGL 398

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           V +A +V   +  KGC+ NVY++TI +      G + EA +   +M    + P    F  
Sbjct: 399 VGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNC 458

Query: 566 LMRGLKKLYNRQIAAEI 582
           L+    K +    A EI
Sbjct: 459 LISAFCKEHRIPEAVEI 475


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 212/433 (48%), Gaps = 12/433 (2%)

Query: 94  ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRK 153
           +L    +   P L   ++ R  + G     ++   S  P+Y H    +   I   +++R 
Sbjct: 48  SLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSYCHQASSFDHAIDICARLRD 107

Query: 154 FGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211
           F  +W L+  MR  +  P   +   F I+  R+A+     +A+ V   M +YGC  D   
Sbjct: 108 FRTLWFLVSRMRSCRLGP---SPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSS 164

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           F  +LD LCK+  V+ A  LF  ++ +FK     +  ++ GWC   +  +A  +L +M +
Sbjct: 165 FNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVE 224

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  P++  YN +L+GY + G+  +A+    EM+++ CD +  +YT +I  L  + +++ 
Sbjct: 225 RGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKR 284

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   F +M + G    V T+  LI   CK   ++    I + M++RG +PN +TY  ++ 
Sbjct: 285 ARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIR 344

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
                 E++  +ELM  M    C P+V  YN++IR  C  GE+++ ++++ +M      P
Sbjct: 345 GLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLP 404

Query: 452 GTDSFVVMVHGFL---GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             D++ ++++          L+ A +   EMV RG L  P+  T   +L+ LL     + 
Sbjct: 405 NLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFL--PRKLTFNRVLDGLLLTGNQDF 462

Query: 509 AKDVWSCIVTKGC 521
           AK++ S  +  GC
Sbjct: 463 AKEILS--LQGGC 473



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 12/227 (5%)

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  T+  I   +    +    V +   M + GC  D+S++N ++ + CK   ++ A N+
Sbjct: 125 PSPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNL 184

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGLLSAPQYGTLKAL 496
           +  ++         S+ ++V+G+    CLI+    A E  KEMV RGL   P   T   +
Sbjct: 185 FKALKG-KFKADCVSYNIIVNGW----CLIKRTPKALEMLKEMVERGL--TPNLTTYNIM 237

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           LN   RA +   A   +  +  + C+++V  +T  IH L   G +K A +    M+   V
Sbjct: 238 LNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGV 297

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFKMYKR 602
           +P   TF  L++ L K  + + A  I E+ V++      IT+ +  R
Sbjct: 298 LPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIR 344


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 207/415 (49%), Gaps = 20/415 (4%)

Query: 169 PQLITTEVFVI-LMRRFASARMVK-----KAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           P L T  +FV  L R  A  R V+     +A E L +M   G EPD+  +  ++D  CK 
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308

Query: 223 SSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
             V++A ++  D + + FKP    + SL+ G+CK+G    A  V       G  P IV+Y
Sbjct: 309 GMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLY 368

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L+ G +Q G +  A +L+ EM   GC PN  +Y ++I  LC+M  + +A+    +   
Sbjct: 369 NTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIA 428

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  D+ TY TLI G+CK  K+D   E+++ M  +G+ P+ +TY  ++    K  + EE
Sbjct: 429 KGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEE 488

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            +E+   M + GC P++  YN+++   CK  ++ EAV++  EM++  L P   SF  +  
Sbjct: 489 VMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFT 548

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQY------GTLKALLNSLLRAQKVEMAKDVWSC 515
           GF   G +  A + F+ M         QY       T   ++++      + MA  ++S 
Sbjct: 549 GFCKIGDIDGAYQLFRRM-------EKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSV 601

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +   GC+ + Y + + I      G++ +   + L+ M+   +P   TF +++  L
Sbjct: 602 MKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCL 656



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 217/464 (46%), Gaps = 16/464 (3%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           VHS++    ++       +   V+  M + R  +  + T   + I ++ F        A+
Sbjct: 111 VHSHNAIMNILVEFGYHNQAHKVYMRMRD-RGVQSDVYT---YTIRIKSFCKTARPYAAL 166

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
            +L  MP+ GC+ +   +  ++  L  +     A +LFDEM  R   P +  F  L++  
Sbjct: 167 RLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVL 226

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG---------KMTDAFELLKEM 304
           CK+G + E++ +L ++   G  P++  +N  + G  + G         ++ +A E L++M
Sbjct: 227 CKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKM 286

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              G +P+  +Y  +I   C+   +++ANR   +    G + D  TY +LI+GFCK    
Sbjct: 287 VNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDP 346

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           DR   +    + +G+ P+ + Y  ++    ++  +   ++LM EM + GC+P++  YN+V
Sbjct: 347 DRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLV 406

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK+G + +A ++ ++  A    P   ++  ++ G+  Q  L  A E    M  +G+
Sbjct: 407 INGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGM 466

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   LLN L +A K E   +++  +  KGC  N+  + I + SL     V EA
Sbjct: 467 --TPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEA 524

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
                +M    + P   +F  L  G  K+ +   A ++  ++ K
Sbjct: 525 VDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEK 568



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 154/291 (52%), Gaps = 5/291 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++   ++  L++  +   ++  A+++++EM + GC P+ + +  +++ LCK   V +
Sbjct: 362 RPSIV---LYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSD 418

Query: 228 AAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A+ L D+ + +   P +  + +L+ G+CK+ KL  A  ++ +M   G  PD++ YN LL+
Sbjct: 419 ASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLN 478

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  + GK  +  E+ K M  KGC PN  +Y +++ +LC+ +K+ EA     EM+  G + 
Sbjct: 479 GLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKP 538

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSM-IQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
           DVV++ TL +GFCK   ID  Y++   M  Q  +     TY  I+ A  ++  +   ++L
Sbjct: 539 DVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKL 598

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
              M+  GC PD   Y VVI   CK+G + +      E       P   +F
Sbjct: 599 FSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTF 649



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 38/318 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  LIK LS+         LM EM  E   L     + +++        V  A  ++D+
Sbjct: 367 LYNTLIKGLSQQGLILPALQLMNEM-AENGCLPNIWTYNLVINGLCKMGCVSDASHLVDD 425

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
               GC PD F +  L+D  CK   +  A ++ + M  +   P +  + +LL G CK GK
Sbjct: 426 AIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGK 485

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             E   +   M++ G  P+I+ YN ++    +  K+ +A +LL EM+ KG  P+  S+  
Sbjct: 486 SEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGT 545

Query: 319 LIQALC-------------RMEK-----------------------MEEANRAFVEMERS 342
           L    C             RMEK                       M  A + F  M+ S
Sbjct: 546 LFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNS 605

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC+ D  TY  +I GFCK   I + Y+ L   +++  +P+  T+  ++     K+++ E 
Sbjct: 606 GCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEA 665

Query: 403 VELMGEMRKIGCVPDVSN 420
           V ++  M + G VP+  N
Sbjct: 666 VGIIHLMLQKGIVPETVN 683



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 167/373 (44%), Gaps = 13/373 (3%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--FTSLLYGWCKEGKLVEAKYVLVQM 269
           + C++  L  +   +E  KL  EMRE    +L    +   +  + ++GK+ EA     +M
Sbjct: 43  YKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERM 102

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
                +P +  +N +++   + G    A ++   MR +G   +  +YT+ I++ C+  + 
Sbjct: 103 DFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARP 162

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
             A R    M   GC+++ V Y T+++G   S + D   E+ D M+ R + P+ + +  +
Sbjct: 163 YAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKL 222

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA--- 446
           +    KK  + E   L+G++ K G  P++  +N+ ++  C+ G L  AV     +EA   
Sbjct: 223 VHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEY 282

Query: 447 ------ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
                     P   ++  ++ G+  +G + +A    K+ V +G    P   T  +L+N  
Sbjct: 283 LRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGF--KPDEFTYCSLINGF 340

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +    + A  V+   + KG   ++  +   I  L   G +  A     +M +   +P  
Sbjct: 341 CKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNI 400

Query: 561 DTFAKLMRGLKKL 573
            T+  ++ GL K+
Sbjct: 401 WTYNLVINGLCKM 413


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 153/523 (29%), Positives = 267/523 (51%), Gaps = 43/523 (8%)

Query: 109 RVINRCG---DAGNLGYRYYMWASKQPN----------YVHSYDVYRAL-----IKS--- 147
           +V+ RC    +AG+L +R  + AS +P+          + ++ D++ AL     +KS   
Sbjct: 85  QVLVRCKKHREAGDL-FRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGF 143

Query: 148 ----------LSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIE 195
                     ++ M   G +   M+ +R     P ++T   +  L+  FA A+ +++A++
Sbjct: 144 APDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVT---YTALIAAFARAKKLEEAMK 200

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWC 254
           +L+EM + GC P+   +  L+DALCK S V  A  +  +M E  F P++  F SL+ G+C
Sbjct: 201 LLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFC 260

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K G + +A+ +L  M   G  P++V Y+ L+ G  +  K  +A E+L+EM+ +G  P+A 
Sbjct: 261 KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAF 320

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y+ LI  LC+ +K+EEA +    M  SGC  DVV Y+++I  FCKS K+    + L  M
Sbjct: 321 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGE 433
            ++   P+ +TY  ++    K  ++ E   ++ +M++ G V PDV  Y+ VI   CK   
Sbjct: 381 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDM 440

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L EA  + + M  A  +P   ++  ++ G    G L EA EY  + + R    AP   T 
Sbjct: 441 LVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA-EYLLQGMKRA-GCAPNVVTY 498

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++ L +A+KV+ A+ V   +   GC  N+  +   ++ L  +G +KEA      M D
Sbjct: 499 TTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 558

Query: 554 --ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
             A+  P   T+  ++  L      Q A ++ E+++   + +Q
Sbjct: 559 GRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSSQQ 601



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 153/534 (28%), Positives = 246/534 (46%), Gaps = 46/534 (8%)

Query: 77  IFRILKKFHSRLP--KLELALQ-HSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ-P 132
           +  IL   HS  P   +E  L   SG    P +  RV+N   DA  L   ++ WA    P
Sbjct: 13  VTAILNLLHSGRPWSAIEPDLSPFSGASTTPRIVGRVVNSLKDA-KLALAFFRWAPASIP 71

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALM--EEMRKEKPQLITTEVFVILMRRFASARMV 190
            + H+   + +L++ L + +K      L   E +   +P + +   + I++  F +A  +
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCS---YNIVISGFCNAGDL 128

Query: 191 KKAIEVLDEMPKYGCEPDEFV-----------------------FGC---------LLDA 218
             A+E+L+EM   G  PD F                         GC         L+ A
Sbjct: 129 HAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAA 188

Query: 219 LCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
             +   ++EA KL +EMRER   P+L  +  L+   CK   +  A+ V+ +M + GF P+
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPN 248

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ +N+L+ G+ + G + DA +LL  M  KG  PN  +Y+ LI  LC+ +K  EA     
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM+  G   D  TY+ LI G CK+ KI+   ++L  M   G  P+ + Y  I+ A  K  
Sbjct: 309 EMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 368

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSF 456
           +L E  + + EMRK    PDV  YN VI   CKLG++ EA  +  +M E+  + P   ++
Sbjct: 369 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +++G      L+EA +    M   G    P   T   +++ L +  ++E A+ +   +
Sbjct: 429 STVINGLCKSDMLVEAQKLLDRMCKAG--CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGM 486

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              GC  NV  +T  I  L     V EA     +M +A   P   T+  ++ GL
Sbjct: 487 KRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGL 540



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 194/447 (43%), Gaps = 71/447 (15%)

Query: 210 FVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F +  LL  L +    +EA  LF  E+    +P +  +  ++ G+C  G L  A  +L +
Sbjct: 78  FSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEE 137

Query: 269 MKDAGFEPD--------------------------------IVVYNNLLSGYAQMGKMTD 296
           MK AGF PD                                +V Y  L++ +A+  K+ +
Sbjct: 138 MKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEE 197

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A +LL+EMR +GC PN  +Y VL+ ALC++  +  A     +M   G   +V+T+ +L+ 
Sbjct: 198 AMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVD 257

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           GFCK   +D   ++L  M+ +G+ PN +TY  ++    K ++  E  E++ EM+  G  P
Sbjct: 258 GFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTP 317

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D   Y+ +I   CK  +++EA  +   M  +  +P    +  ++H F   G L+EA +  
Sbjct: 318 DAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTL 377

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK----------DVWSCIVT-------- 518
           +EM  R    +P   T   +++ L +  K+  A+          DV   +VT        
Sbjct: 378 QEM--RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL 435

Query: 519 ------------------KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
                              GC  +V  +T  I  L   G ++EA      M  A   P  
Sbjct: 436 CKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNV 495

Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKVR 587
            T+  L+ GL K      A  + E++R
Sbjct: 496 VTYTTLISGLCKARKVDEAERVMEEMR 522


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 208/427 (48%), Gaps = 10/427 (2%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           L   L    +   P L   ++ R  + G    +++   S  P+Y H    Y   I   ++
Sbjct: 54  LAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSYSHHPSSYDHAIDISAR 113

Query: 151 MRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
           +R   ++ +L+  MR  +  P   T + F I+  R+ASA    +A++V   M ++GC  D
Sbjct: 114 LRDSPSLRSLVYRMRSARLGP---TPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQD 170

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
              F  +LD LCK+  V+ A  LF   + +F+     +  ++ GWC   +  +A  +L +
Sbjct: 171 LQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKE 230

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M   G  P++  YN +L GY + G++ +A++   EM+++ C+ +  +YT +I       +
Sbjct: 231 MVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGE 290

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           ++ A + F  M + G    V TY   I   CK   +D    I + M+ +G +PN +TY  
Sbjct: 291 IKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNL 350

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++     + E+E  +E MG M+  GC P+V  YN+VIR  C  GE+ +A++++ +M +  
Sbjct: 351 VIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGD 410

Query: 449 LSPGTDSFVVMVHGFL---GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
             P  D++ +++           L+ A     EMV RG +  P+  T   +LN LL    
Sbjct: 411 CLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFV--PRKFTFNRVLNGLLLTGN 468

Query: 506 VEMAKDV 512
              AK++
Sbjct: 469 QGFAKEI 475



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P   T+  I   +    +    V++   M + GC  D+ ++N ++ + CK   ++ A N+
Sbjct: 134 PTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNL 193

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGLLSAPQYGTLKAL 496
           +   +         S+ VMV+G+    CLI+    A E  KEMV RGL   P   +   +
Sbjct: 194 FKVFKG-KFRADCVSYNVMVNGW----CLIKRTNKALEMLKEMVKRGL--TPNLTSYNTM 246

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L    RA ++  A D +  +  + CE++V  +T  IH     G +K A      M+   V
Sbjct: 247 LKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGV 306

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFKMYKR----RGE 605
           +P   T+   ++ L K  N   A  I E+ V K      IT+ +  R    RGE
Sbjct: 307 LPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGE 360



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 9/178 (5%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAI 194
           S   Y A I+ L K         + EEM  +   P  IT   + +++R       +++A+
Sbjct: 309 SVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSIT---YNLVIRGLCHRGEMERAM 365

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGW 253
           E +  M   GCEP+   +  ++   C    + +A  LF +M      P+L  +  L+   
Sbjct: 366 EFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAM 425

Query: 254 C---KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
               K   L+ A  +L++M D GF P    +N +L+G    G    A E+L+   R G
Sbjct: 426 FVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGFAKEILRLQSRCG 483


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 190/390 (48%), Gaps = 10/390 (2%)

Query: 136 HSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           H  DV  Y  +I  L KM        L+++M ++  KP ++    +  ++      R+V 
Sbjct: 41  HEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVA---YNTIIDSLCKDRLVT 97

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A++   EM K G  PD F +  +L   C    V EA  LF +M ER   P+   FT L+
Sbjct: 98  EAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILI 157

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK+  + EA  V   M + G EPD+  YN L+ GY    +M +A +L   M RKGC 
Sbjct: 158 DGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCA 217

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  SY +LI   C+  +++EA     EM       D+ TY+TL+ GFC+  +     E+
Sbjct: 218 PNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQEL 277

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M   G+LPN +TY  ++    K   L+E  EL+  M++    P++  Y ++I   C 
Sbjct: 278 LKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCT 337

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+L+ A  +++ +    + P   ++ VM+ G L  G   EACE F+EM   G L  P  
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCL--PNS 395

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            T   ++   LR      A  +   +V KG
Sbjct: 396 CTYNVIIQGFLRNGDTPNAVRLIEEMVGKG 425



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 212/434 (48%), Gaps = 7/434 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L+T   F  L+    S   +  A+++ DEM K G EPD   +  +++ LCK  +   
Sbjct: 7   QPTLVT---FNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTM 63

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A +L  +M E+  KP++  + +++   CK+  + EA     +M   G  PD+  Y+++L 
Sbjct: 64  ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILH 123

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G+  +G++ +A  L K+M  +   PN  ++T+LI  LC+   + EA   F  M   G E 
Sbjct: 124 GFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEP 183

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DV TY  L+ G+C   ++D   ++ + M ++G  PN  +Y  ++  H K   ++E   L+
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLL 243

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM      PD+  Y+ ++R  C++G  +EA  +  EM +  L P   ++ +++ G    
Sbjct: 244 AEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKH 303

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L EA E  K M    +   P       L+  +    K+E A++++S +  KG +  V 
Sbjct: 304 GHLDEAFELLKAMQESKI--EPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVV 361

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK- 585
            +T+ I  L   G   EAC    +M     +P   T+  +++G  +  +   A  + E+ 
Sbjct: 362 TYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEM 421

Query: 586 VRKMAAERQITFKM 599
           V K  +    TF+M
Sbjct: 422 VGKGFSADSSTFRM 435



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 208/439 (47%), Gaps = 12/439 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASAR 188
           QP  V     +  L+  L    K      L +EM K   +P +IT    +  + +  +  
Sbjct: 7   QPTLV----TFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTT 62

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
           M   A+++L +M + GC+P+   +  ++D+LCK+  V EA   F EM +E   P +  ++
Sbjct: 63  M---ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S+L+G+C  G++ EA  +  QM +    P+ V +  L+ G  +   +++A+ + + M  K
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G +P+  +Y  L+   C   +M+EA + F  M+R GC  +V +Y  LI+G CKS +ID  
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L  M  + + P+  TY  +M    +    +E  EL+ EM   G +P++  Y++V+  
Sbjct: 240 KGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDG 299

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G L EA  +   M+ + + P    + +++ G    G L  A E F  +  +G+   
Sbjct: 300 LCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGI--Q 357

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   +++ LL+      A +++  +   GC  N   + + I     NG    A   
Sbjct: 358 PTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRL 417

Query: 548 CLDMMDADVMPQPDTFAKL 566
             +M+         TF  L
Sbjct: 418 IEEMVGKGFSADSSTFRML 436



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 200/393 (50%), Gaps = 6/393 (1%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M K G +P    F  LL  LC  + + +A KLFDEM +   +P +  +++++ G CK G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +L +M++ G +P++V YN ++    +   +T+A +   EM ++G  P+  +Y+ 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++   C + ++ EA   F +M       + VT+T LI G CK R I   + + ++M ++G
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+  TY  ++  +  + +++E  +L   M + GC P+V +YN++I   CK G + EA 
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  EM   SL+P   ++  ++ GF   G   EA E  KEM   GLL  P   T   +L+
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLL--PNLITYSIVLD 298

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +   ++ A ++   +     E N++ +TI I  + + G ++ A     ++    + P
Sbjct: 299 GLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQP 358

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
              T+  ++ GL K     ++ E  E  R+MA 
Sbjct: 359 TVVTYTVMISGLLK---GGLSNEACELFREMAV 388


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 230/475 (48%), Gaps = 20/475 (4%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T    +  + R   +R+V+ A E L +M   G EP++F +  ++D  CK   V +
Sbjct: 362 RPDVVTYNTVICGLCR--KSRVVE-AEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVD 418

Query: 228 AAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A ++  D + + FKP    + SL+ G+C++G   +A  V       G  P I+VYN L+ 
Sbjct: 419 ANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIK 478

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  Q G +  A +L+ EM  KGC P+  +Y ++I  LC+M  + +AN    +    GC  
Sbjct: 479 GLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIP 538

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+ TY TL+ G+C+  K+D   E+++ M  +G+ P+ +TY  ++    K  + EE +E+ 
Sbjct: 539 DIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIF 598

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M + GC P++  YN +I   C   ++ EAV++  EM++  L+P   SF  ++ GF   
Sbjct: 599 KAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKV 658

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A   F+ M  +  +S     T   ++++      ++MA  ++S +   GC+ + Y
Sbjct: 659 GDLDGAYGLFRGMEKQYDVSHTT-ATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNY 717

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL-------------KKL 573
            + + I      G+V +   + L+ ++   +P   TF +++  L               +
Sbjct: 718 TYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLM 777

Query: 574 YNRQIAAEITEKVRKMAAERQITFKMYK--RRGERDLKEKAKKQVDGRKRRARQR 626
             + I  +    + +   +  IT+  Y+    G RD K   KK  +    R   R
Sbjct: 778 VQKDIVPDTVNTIFEADKKGHITYHAYEFLYDGVRDKKILKKKHPNWNSLRREPR 832



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 191/399 (47%), Gaps = 4/399 (1%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           + D++ K G  P+ F F   +  LCK  S+  A +L   + RE  +P +  + +++ G C
Sbjct: 317 LFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLC 376

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           ++ ++VEA+  L +M + GFEP+   YN+++ GY + G + DA  +LK+   KG  P+  
Sbjct: 377 RKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEF 436

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y  L+   C+    ++A   F +    G    ++ Y TLI G C+   I    ++++ M
Sbjct: 437 TYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            ++G  P+  TY  I+    K   L +   L+G+    GC+PD+  YN ++   C+  +L
Sbjct: 497 AEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKL 556

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
             A+ + N M +  ++P   ++  +++G        E  E FK M  +G   AP   T  
Sbjct: 557 DSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG--CAPNIITYN 614

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM-MD 553
            ++ SL  ++KV  A D+   + +KG   +V ++   I      G +  A      M   
Sbjct: 615 TIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQ 674

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            DV     T+  ++    +  N ++A  +  +++K   +
Sbjct: 675 YDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCD 713



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 214/461 (46%), Gaps = 8/461 (1%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + H+   Y+++++ L    KF  +  L+ EMR      +   V+V  MR +     +++A
Sbjct: 115 FKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEA 174

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
           ++  + M  + C+P  + +  +++ L +     +A K++  M++ + +  +  +T  +  
Sbjct: 175 VDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKS 234

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +C+ G+   A  +L  M   G   + V Y  +++G+ + G    A EL  EM      P+
Sbjct: 235 FCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPD 294

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             ++  L+ ALC+   + E+ R F ++ + G   ++ T+   I G CK   +DR   +L 
Sbjct: 295 VTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLG 354

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            + + G+ P+ +TY  ++    +K  + E  E + +M   G  P+   YN +I   CK G
Sbjct: 355 CVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKG 414

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + +A  +  +       P   ++  +V+GF   G   +A   FK+ +G+GL   P    
Sbjct: 415 MVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGL--RPSIIV 472

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              L+  L +   +  A  + + +  KGC+ +++ + + I+ L   G + +A     D +
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAE 592
               +P   T+  L+ G    Y RQ+  +   E V +M ++
Sbjct: 533 TKGCIPDIFTYNTLVDG----YCRQLKLDSAIELVNRMWSQ 569



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 151/343 (44%), Gaps = 5/343 (1%)

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV--VYNNLLSG 287
           +L  + ++ FK +L  + S+L      GK  E + +L +M+ +  +  ++  VY   +  
Sbjct: 106 QLIKKTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMR-SNLDNTLLEGVYVEAMRF 164

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           Y + GK+ +A +  + M    CDP+  SY  ++  L       +A++ ++ M+    E+D
Sbjct: 165 YGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESD 224

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V TYT  I  FC++ +      +L +M   G   N + Y  ++    +  + +   EL  
Sbjct: 225 VYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFD 284

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM +    PDV+ +N ++   CK G + E+  +++++    + P   +F + + G   +G
Sbjct: 285 EMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEG 344

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            L  A      +   GL   P   T   ++  L R  +V  A++    +V  G E N + 
Sbjct: 345 SLDRAVRLLGCVSREGL--RPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFT 402

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +   I      G V +A     D +     P   T+  L+ G 
Sbjct: 403 YNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGF 445



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 121/286 (42%), Gaps = 34/286 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  LI    K+      + L   M K+     TT  + I++  F+    +K A+ +  EM
Sbjct: 648 FGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEM 707

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAK-LFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
            K GC+PD + +  L+D  CK  +V +  K L + + + F PSL  F  +L   C E K+
Sbjct: 708 KKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKV 767

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT-DAFELLKEMRR-----KGCDPNA 313
            EA  ++  M      PD V   N +    + G +T  A+E L +  R     K   PN 
Sbjct: 768 QEAVGIIHLMVQKDIVPDTV---NTIFEADKKGHITYHAYEFLYDGVRDKKILKKKHPNW 824

Query: 314 NSYTVLIQALCRMEKMEEANR-AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI-- 370
           NS         R E    A+   F  + R G     V   TL S    +  +D+  +I  
Sbjct: 825 NSL--------RREPRSSADVWCFWFVSRMGAFKPNVVKITLKSSSLST--VDKGVQIAI 874

Query: 371 -LDSMIQ-------RGILPN--QLTYLHIMLAHEKKEELEECVELM 406
            L  ++Q       R I PN   L    IML H  K+ +  C++LM
Sbjct: 875 CLLPIVQNPEFFFFRDIQPNLHHLDVKMIMLLHTCKQNV-MCIDLM 919


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 204/397 (51%), Gaps = 2/397 (0%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ WAS Q  +  S + Y  ++    ++  F   W  ++ M+      +T E F+ILMRR
Sbjct: 80  FFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVD-VTVETFLILMRR 138

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
           +  A +  +AI   + M  Y C+PD+  F  L+  LC+     +A + FD ++++F+P +
Sbjct: 139 YVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDKFEPDV 198

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             +T+L+ GWC+ G + EA+ V  +MK AG +P++  Y+ ++    + G++T A ++  E
Sbjct: 199 IVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAE 258

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M   GC PN+ +Y  L++   +  + E+  + + +M+R GCE D VTY  LI   CK   
Sbjct: 259 MLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDEN 318

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           ++   +++  M ++G  PN  T+  +     K  ++     +  +M+++ C  +   YN 
Sbjct: 319 LEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNT 378

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++++          + +  EM+   + P  +++ V++  + G G    A ++F+EM+   
Sbjct: 379 LMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEK 438

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            L  P       +L  L +A +++  +++   +V +G
Sbjct: 439 CLR-PSLPVYDMVLQQLRKAGQLKKHEELVEKMVDRG 474



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 38/326 (11%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  F  L+  + + G   EA +   +M+D   +PD + ++ L+S   +  + + A E  
Sbjct: 128 TVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFF 187

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             ++ K  +P+   YT L++  CR   + EA R F EM+ +G + +V TY+ +I   C+ 
Sbjct: 188 DSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRC 246

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            +I R ++I   M+  G  PN +TY  +M  H K    E+ +++  +M+++GC PD   Y
Sbjct: 247 GQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTY 306

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   CK   L++A+ V   M                     +GC             
Sbjct: 307 NFLIETHCKDENLEDAIKVIGLMAK-------------------KGC------------- 334

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
                AP   T   L   + +   V  A  ++  +    CE N   +   +    ++   
Sbjct: 335 -----APNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKST 389

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLM 567
                   +M +  + P  +T+  L+
Sbjct: 390 DMVLKLKTEMDENKIEPNVNTYKVLI 415



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 3/175 (1%)

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  + +++R   + G   EA++ +N ME  +  P   +F +++     +    +A E+F 
Sbjct: 129 VETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFD 188

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            +  +     P       L+    RA  +  A+ V+  +   G + NVY ++I I SL  
Sbjct: 189 SLKDK---FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCR 245

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            G +  A     +M+DA   P   T+  LMR   K    +   ++  +++++  E
Sbjct: 246 CGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCE 300


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 228/449 (50%), Gaps = 27/449 (6%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S D + + +IL   H+    +E +LQ   +     L ++ + R      +   ++ +A+ 
Sbjct: 35  SKDADLVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSFFDYANS 94

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            P+   S   Y  L+  L+K+R+F A W L+ +M  +      T+ F++L+RR  S+   
Sbjct: 95  LPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDHK-----GTDTFLLLIRRLISSGRT 149

Query: 191 KKAIEVLDEMP-----KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH 245
           ++AI   D++      K G   D+F +  LLD LCK   VK A ++F++ +E F   ++ 
Sbjct: 150 RQAIRAFDDIEGLTGNKVGI--DDFCY--LLDVLCKYGYVKVAVEVFNKRKEEFGVDVKI 205

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT---------- 295
           +T L+YGWCK G+   A+  L  M + G EP++V YN LL+G  +   +           
Sbjct: 206 YTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTIR 265

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A ++  EMR++G +P+  S+++++    R  K E +     +M+  G    V TYT++I
Sbjct: 266 HAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVI 325

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK-IGC 414
              C   +++    +++ M++ GI P+  TY      +  +++    + L  +MR+   C
Sbjct: 326 KCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCLC 385

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P +  YN+++ L   L + +    +WN+M+ + + P  DS+  ++HG   +    EAC+
Sbjct: 386 APSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEACQ 445

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           +F EM+ RG L  PQ  T + L   L+++
Sbjct: 446 FFVEMIERGFL--PQKVTFEMLYRGLIQS 472


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 213/440 (48%), Gaps = 39/440 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+ +  V +L  +M      P + T     IL+  F   R +  A  VL 
Sbjct: 153 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLN---ILINSFCHLRRLGYAFSVLA 209

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           ++ K GC+PD   F  L+  LC    + EA  LFD+ + E F+P +  + +L+ G CK G
Sbjct: 210 KLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVG 269

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M      P+++ YN ++    +  ++T+AF L  EM  KG  P+  +Y 
Sbjct: 270 NTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYN 329

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI ALC + + +       EM  S    +VV ++T++   CK   I   ++++D MI+R
Sbjct: 330 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 389

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  +M  H  + E++E V++   M   GCVP+V +YN++I   C++  + +A
Sbjct: 390 GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKA 449

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-------------- 483
           + +  +M    L   T ++  ++HG    G L  A   F EMV  G              
Sbjct: 450 MGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 509

Query: 484 ------------LLSAPQYGTLKA-------LLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                       LL A +   L A        ++ + RA ++E A+D++S + +KG + +
Sbjct: 510 LCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 569

Query: 525 VYAWTIWIHSLFSNGHVKEA 544
           V  + I IH L   G + EA
Sbjct: 570 VRTYNIMIHGLCKRGLLDEA 589



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 196/413 (47%), Gaps = 14/413 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ V     Y  L+  L K+    A   L+  M ++  +P +I    +  ++      R
Sbjct: 252 QPDVV----TYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIA---YNTIIDSLCKDR 304

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V +A  +  EM   G  PD F +  L+ ALC     K    L +EM   +  P++  F+
Sbjct: 305 QVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS 364

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CKEG +  A  V+  M   G EPD+V Y  L+ G+    +M +A ++   M  K
Sbjct: 365 TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHK 424

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC PN  SY +LI   C++++M++A     +M   G  AD VTY TLI G C   ++   
Sbjct: 425 GCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHA 484

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+  G +P+ +TY  ++    K   L E + L+  +       D+  YN+ I  
Sbjct: 485 IALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDG 544

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ GEL+ A ++++ + +  L P   ++ +M+HG   +G L EA + F++M   G    
Sbjct: 545 MCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENG---C 601

Query: 488 PQYGTL-KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
            + G +   ++   LR+ +   A  +   ++ +G   +V   T+ +  L  +G
Sbjct: 602 SRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDDG 654



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 166/374 (44%), Gaps = 6/374 (1%)

Query: 223 SSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           +++ +A   F+ M     P S   FT LL    K         +  QM   G  PD+   
Sbjct: 129 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L++ +  + ++  AF +L ++ + GC P+  ++  LI+ LC   K+ EA   F +   
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G + DVVTY TL++G CK         +L SM+Q+   PN + Y  I+ +  K  ++ E
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L  EM   G  PD+  YN +I   C L E K    + NEM  + + P    F  +V 
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 368

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               +G +  A +    M+ RG+   P   T  AL++      +++ A  V+  +V KGC
Sbjct: 369 ALCKEGMIAIAHDVVDMMIKRGV--EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             NV ++ I I+       + +A      M    ++    T+  L+ GL  +   Q A  
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 486

Query: 582 ITEKVRKMAAERQI 595
           +     +M A  QI
Sbjct: 487 L---FHEMVASGQI 497



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/303 (19%), Positives = 126/303 (41%), Gaps = 37/303 (12%)

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + DA      M      P+   +T L+ ++ +M+          +M+  G   DV T   
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI+ FC  R++   + +L  ++                                   K+G
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLL-----------------------------------KLG 215

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C PD + +N +IR  C  G++ EA++++++       P   ++  +++G    G    A 
Sbjct: 216 CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAI 275

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
              + MV +     P       +++SL + ++V  A +++S ++TKG   +++ +   IH
Sbjct: 276 RLLRSMVQKN--CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIH 333

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593
           +L +    K   +   +M+++ +MP    F+ ++  L K     IA ++ + + K   E 
Sbjct: 334 ALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 393

Query: 594 QIT 596
            + 
Sbjct: 394 DVV 396


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 206/432 (47%), Gaps = 3/432 (0%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           EF  D++++ RIL+   +    + + +    V +   L  +V++R  +     + ++MWA
Sbjct: 128 EFEADMDEVSRILRSRFASPEAIVITMDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWA 187

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
             Q  Y H  D Y  ++  L K ++F  +  L+ +M  E   L++      +MRR   A 
Sbjct: 188 GTQEGYCHCADSYDMMVDILGKFKQFDLMCGLIGQMH-EIGGLVSLATMTKVMRRLCGAN 246

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
               AI+   +M ++G   D      LLD LCK  SVK A   F  ++    P    F +
Sbjct: 247 RWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGTIPPDESSFNT 306

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++GWCK   L EA+  + +M+  GF P +  Y  L+  Y           +L EM  KG
Sbjct: 307 LVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKG 366

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +YT+++ AL +  + +EA   F ++++ GC  D   Y  LI   C++ ++    
Sbjct: 367 CTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDAN 426

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +++ M + GI PN  T+  ++ A       E  ++L+ +M +  C PD+  Y  +++L 
Sbjct: 427 FVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLC 486

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+   +K  + +   M    ++P   ++ ++V      G L ++C + +EMV +G    P
Sbjct: 487 CRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGF--TP 544

Query: 489 QYGTLKALLNSL 500
           Q  T   +L  L
Sbjct: 545 QQATFDLVLEKL 556



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 142/336 (42%), Gaps = 9/336 (2%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ---MGKMTDAF 298
           SL   T ++   C   +  +A     +M   G   D    N LL    +   + +   AF
Sbjct: 231 SLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAF 290

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           + LK        P+ +S+  L+   C+   ++EA     EMER G    V TYT LI  +
Sbjct: 291 QALKGT----IPPDESSFNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAY 346

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C  +       ILD M  +G  PN +TY  +M A  K    +E ++   ++++ GC  D 
Sbjct: 347 CMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDA 406

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
           S YN +I + C+ G L++A  V  EM    +SP   +F  ++           A +   +
Sbjct: 407 SFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQ 466

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  +     P   T   LL    R + V+    +   +  K    +   +T+ +  L  N
Sbjct: 467 MEEQS--CNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRN 524

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
           G + ++C +  +M+     PQ  TF  ++  LK ++
Sbjct: 525 GRLTQSCLFLEEMVLKGFTPQQATFDLVLEKLKNMH 560



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 44/260 (16%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
            +  S   Y  LI++    + F  V  +++EM  +   P +IT   + I+M     A   
Sbjct: 331 GFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIIT---YTIVMHALGKAGRT 387

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           ++A++  D++ + GC  D   + CL+  LC+   +++A  + +EM R    P+L  F +L
Sbjct: 388 QEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTL 447

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL------------------------ 285
           +   C       A  +LVQM++    PDI  Y  LL                        
Sbjct: 448 ISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDI 507

Query: 286 ----SGYAQM-------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
               S Y  +       G++T +   L+EM  KG  P   ++ ++++ L  M  +    +
Sbjct: 508 TPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATFDLVLEKLKNMHMLSAVRK 567

Query: 335 -AFVEMERSG--CEADVVTY 351
              + M   G  C + V +Y
Sbjct: 568 IQLLRMHTEGTRCRSGVPSY 587



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 7/204 (3%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y  ++    K ++ D    ++  M + G L +  T   +M          + ++   +M
Sbjct: 199 SYDMMVDILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKM 258

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G   D    NV++   CK   +K A   +  ++  ++ P   SF  +VHG+     L
Sbjct: 259 DRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKG-TIPPDESSFNTLVHGWCKARML 317

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA E  KEM   G   +P   T   L+ +    +  +    +   + TKGC  N+  +T
Sbjct: 318 KEARETMKEMERHGF--SPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYT 375

Query: 530 IWIHSLFSNGHVKEACSYCLDMMD 553
           I +H+L   G  +EA    LD  D
Sbjct: 376 IVMHALGKAGRTQEA----LDTFD 395


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 206/405 (50%), Gaps = 7/405 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y A++       +  A   L+ EM  E P   T   +  L+R          A+ VLDEM
Sbjct: 3   YNAMVAGYCGAGQLDAARRLVAEMPVE-PDAYT---YNTLIRGLCGRGRTANALAVLDEM 58

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C PD   +  LL+A CK S  K+A KL DEMR++   P +  +  ++ G C+EG++
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A   L  +   G EP+ V YN +L G     +  DA EL+ EM +KGC PN  ++ +L
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 178

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LCR   +E A     ++ + GC  + ++Y  L+  FCK +K+D+    LD M+ RG 
Sbjct: 179 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 238

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++ A  +  E++  VEL+ +++  GC P + +YN VI    K G+ KEA+ 
Sbjct: 239 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 298

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + NEM +  L P   ++  +  G   +  + +A   F ++   G+   P      A++  
Sbjct: 299 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI--RPNTVLYNAIILG 356

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L + ++   A D+++ ++  GC  N   +TI I  L   G +KEA
Sbjct: 357 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 401



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 188/388 (48%), Gaps = 6/388 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
           +  A  +  A  ++ EMP    EPD + +  L+  LC       A  + DEM R R  P 
Sbjct: 10  YCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPD 66

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +T LL   CK     +A  +L +M+D G  PDIV YN +++G  Q G++ DA E LK
Sbjct: 67  VVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLK 126

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            +   GC+PN  SY ++++ LC  E+ E+A     EM + GC  +VVT+  LIS  C+  
Sbjct: 127 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 186

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            ++   E+L+ + + G  PN L+Y  ++ A  K++++++ +  +  M   GC PD+ +YN
Sbjct: 187 LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 246

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++   C+ GE+  AV + ++++    +P   S+  ++ G    G   EA E   EMV +
Sbjct: 247 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 306

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P   T   +   L R  ++E A   +  +   G   N   +   I  L       
Sbjct: 307 GL--QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 364

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
            A      M+    MP   T+  L+ GL
Sbjct: 365 SAIDLFAYMIGNGCMPNESTYTILIEGL 392



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 168/325 (51%), Gaps = 5/325 (1%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+C  G+L  A+ ++ +M     EPD   YN L+ G    G+  +A  +L EM 
Sbjct: 3   YNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEML 59

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           R+ C P+  +YT+L++A C+    ++A +   EM   GC  D+VTY  +++G C+  ++D
Sbjct: 60  RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 119

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              E L ++   G  PN ++Y  ++      E  E+  ELMGEM + GC P+V  +N++I
Sbjct: 120 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 179

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+ G ++ A+ V  ++     +P + S+  ++H F  Q  + +A  +   MV RG  
Sbjct: 180 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG-- 237

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   +   LL +L R+ +V++A ++   +  KGC   + ++   I  L   G  KEA 
Sbjct: 238 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 297

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGL 570
               +M+   + P   T++ +  GL
Sbjct: 298 ELLNEMVSKGLQPDIITYSTIAAGL 322



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 170/345 (49%), Gaps = 6/345 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++  K   +     L++EMR +   P ++T  V V           V  AIE L 
Sbjct: 70  YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV---NGICQEGRVDDAIEFLK 126

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +P YGCEP+   +  +L  LC     ++A +L  EM ++   P++  F  L+   C++G
Sbjct: 127 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 186

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  VL Q+   G  P+ + YN LL  + +  KM  A   L  M  +GC P+  SY 
Sbjct: 187 LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 246

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALCR  +++ A     +++  GC   +++Y T+I G  K+ K     E+L+ M+ +
Sbjct: 247 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 306

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  I     +++ +E+ +   G+++ +G  P+   YN +I   CK  E   A
Sbjct: 307 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 366

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++++  M      P   ++ +++ G   +G + EA +   E+  R
Sbjct: 367 IDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 411


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 208/406 (51%), Gaps = 7/406 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY A++       +  A   L+ +M  E P   T   +  L+R          A+ VL++
Sbjct: 136 VYNAMVAGYCGAGQLDAARRLVADMPVE-PDAYT---YNTLIRGLCGRGRTSNALAVLED 191

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + GC PD   +  LL+A CK S  K+A KL DEM ++   P +  +  +L G C+EG+
Sbjct: 192 MFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGR 251

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A   L  +   G EP+ V YN +L G     +  DA +L++EM  KGC PN  ++ +
Sbjct: 252 VEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNM 311

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LCR   +E A     +M + GC  + ++Y  L+  FCK +KI +  E ++ M+ RG
Sbjct: 312 LISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG 371

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ ++Y  ++ A  +  E++  +EL+ +++  GC P + +YN VI    K G+ KEA+
Sbjct: 372 CYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEAL 431

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + +EM +  L P   ++  +  G   +  + EA   F ++   G+   P      A+L 
Sbjct: 432 ELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGI--RPTAALYNAILL 489

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            L + ++   A D+++ +++ GC  N   +TI +  L   G VKEA
Sbjct: 490 GLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEA 535



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 189/396 (47%), Gaps = 6/396 (1%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           V+  ++  +  A  +  A  ++ +MP    EPD + +  L+  LC       A  + ++M
Sbjct: 136 VYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVLEDM 192

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            R    P +  +T LL   CK     +A  +L +M D G  PDIV YN +L+G  Q G++
Sbjct: 193 FRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRV 252

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            DA E LK +   GC+PN  SY ++++ L   E+ E+A +   EM   GC  +VVT+  L
Sbjct: 253 EDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNML 312

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           IS  C+   ++   E+L+ M Q G  PN L+Y  ++ A  K++++ + +E +  M   GC
Sbjct: 313 ISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGC 372

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD+ +YN ++   C+ GE+  A+ + ++++    SP   S+  ++ G    G   EA E
Sbjct: 373 YPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALE 432

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
              EM  +GL   P   T   + + L R  ++E A   +  +   G       +   +  
Sbjct: 433 LLDEMTSKGL--QPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLG 490

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           L        A      M+ +  MP   T+  L+ GL
Sbjct: 491 LCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGL 526



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 177/349 (50%), Gaps = 6/349 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++  K   +     L++EM  +   P ++T   + +++        V+ A+E L 
Sbjct: 204 YTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVT---YNVVLNGICQEGRVEDAMEFLK 260

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +P YGCEP+   +  +L  L      ++A KL +EM  +   P++  F  L+   C+ G
Sbjct: 261 NLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRG 320

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  VL QM   G  P+ + YN LL  + +  K+  A E ++ M  +GC P+  SY 
Sbjct: 321 LVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYN 380

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALCR  +++ A     +++  GC   +++Y T+I G  K+ K     E+LD M  +
Sbjct: 381 TLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSK 440

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  I     +++ +EE V    +++ +G  P  + YN ++   CK  E   A
Sbjct: 441 GLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNA 500

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           ++++  M ++   P   ++ ++V G   +G + EA E F ++  RG+++
Sbjct: 501 IDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVVN 549



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 192/433 (44%), Gaps = 50/433 (11%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC--LLDALCKN 222
           R++      TE   +L+RR      +  A+ ++D +          V  C  L+  LC +
Sbjct: 62  RRKASSASATERLRVLVRRGE----LDDALRLVDSLAGLNPPSPAAVGPCAALIKKLCAS 117

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
               +A ++         P +  + +++ G+C  G+L  A+ ++  M     EPD   YN
Sbjct: 118 GRTADARRVL----AASGPDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYN 170

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+ G    G+ ++A  +L++M R+GC P+  +YT+L++A C+    ++A +   EM   
Sbjct: 171 TLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDK 230

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  D+VTY  +++G C+  +++   E L ++   G  PN ++Y  ++      E  E+ 
Sbjct: 231 GCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDA 290

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +LM EM   GC P+V  +N++I   C+ G ++ A+ V  +M     +P + S+      
Sbjct: 291 EKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSY------ 344

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                                            LL++  + +K+  A +    +V++GC 
Sbjct: 345 -------------------------------NPLLHAFCKQKKIHKAMEFVELMVSRGCY 373

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            ++ ++   + +L  NG V  A      + D    P   ++  ++ GL K    + A E+
Sbjct: 374 PDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALEL 433

Query: 583 TEKVRKMAAERQI 595
            +++     +  I
Sbjct: 434 LDEMTSKGLQPDI 446


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 200/386 (51%), Gaps = 7/386 (1%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAK 263
           C  D   +  L+  LCK   +++A     +M  + F P +  +T++++  C E +L EA+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
             L +M +    P++V Y  L+ G  + G++ +A  LL +MR+K C P A +Y  LI  L
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGL 125

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           C+ E+  EA     EM  SGC  D+ TYTTLI+GFCKS+K D    + + ++ RG  P+ 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           +TY  ++    K+  L+E ++L G M K G C+P+   YN +I   C++G++ EA+N+  
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M     SP   ++  +++GF     L +A +   +M  +GL   P   T  +L++ L R
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL--TPDVVTFTSLMDGLCR 303

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             ++  A  +   +  K C   VY +   +        ++EA  + L+ MD    P   +
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP--PNVVS 361

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRK 588
           F  ++RGL K+     A E+ E+ R+
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARR 387



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 219/451 (48%), Gaps = 17/451 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I +L    +       +EEM  R   P ++T   + +L+        V +A+ +L 
Sbjct: 49  YTAVIHALCVENRLHEARKFLEEMANRNLTPNVVT---YTVLIDGLCKGGRVDEAVALLS 105

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K  C P    +  L+  LCK     EA  L +EM      P +  +T+L+ G+CK  
Sbjct: 106 KMRK-KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSK 164

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSY 316
           K  +A  V  Q+   GF PD+V Y+ L+ G  + G++ +A +L   M + G C PN  +Y
Sbjct: 165 KSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI   CRM KM+EA      M  +G   DVVTYTTL++GFCK  ++D  Y++L+ M +
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ P+ +T+  +M    ++  L + V ++GEMR+  C P V  YN ++   C+  +L+E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A      +E     P   SF +M+ G        EA E  +E   R     P       +
Sbjct: 345 ARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEE--ARRRRCNPDVVMYTTV 400

Query: 497 LNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           ++ L R +KV+ A  V+  ++ + GC  N   ++  +  L + G +  A  Y    ++  
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGY----IEKG 456

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            +P   T+  L+   +K    + A E+ + +
Sbjct: 457 CVPNIGTYNLLIDAFRKANRDEDARELLDDM 487



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 188/370 (50%), Gaps = 7/370 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L++     + +++A+  L +M   G  PD + +  ++ ALC  + + EA K  +EM 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R   P++  +T L+ G CK G++ EA  +L +M+     P  V YN+L+SG  +  + +
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERAS 132

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A++LL+EM   GC P+  +YT LI   C+ +K ++A R F ++   G   DVVTY+ LI
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 356 SGFCKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
            G CK  ++    ++   MI+ G  +PN +TY  ++    +  +++E + L+  M + G 
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PDV  Y  ++   CKL  L +A ++ N+M    L+P   +F  ++ G   +  L +A  
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
              EM  R    +P   T   +L+   RA ++E A+     +    C  NV ++ I I  
Sbjct: 313 ILGEM--RRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRG 368

Query: 535 LFSNGHVKEA 544
           L       EA
Sbjct: 369 LCKVNRSSEA 378



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 162/305 (53%), Gaps = 17/305 (5%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQ 170
           R  +A +L  R     S  PN V     Y +LI    +M K      L+E M +    P 
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNTV----TYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           ++T   +  LM  F     +  A ++L++M + G  PD   F  L+D LC+ + + +A  
Sbjct: 256 VVT---YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +  EMR +   P++  + ++L G+C+  +L EA+  +++  D    P++V +N ++ G  
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC--PPNVVSFNIMIRGLC 370

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEADV 348
           ++ + ++A EL++E RR+ C+P+   YT +I  LCR +K++EA R + +M E  GC  + 
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           +TY+TL++G C +  +DR        I++G +PN  TY  ++ A  K    E+  EL+ +
Sbjct: 431 ITYSTLVTGLCNAGMLDRAR----GYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDD 486

Query: 409 MRKIG 413
           M + G
Sbjct: 487 MVQRG 491



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  +  +YT LIQ LC+++++E+A     +M   G   DV TYT +I   C   ++    
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           + L+ M  R + PN +TY  ++    K   ++E V L+ +MRK  CVP    YN +I   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGL 125

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK     EA ++  EM  +   P   ++  ++ GF       +A   F+++V RG    P
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF--RP 183

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSY 547
              T   L++ L +  +++ A D++  ++  G C  N   +   I      G + EA + 
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNL 243

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV-RKMAAERQITF 597
              M +    P   T+  LM G  KL     A ++  ++ RK      +TF
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           + C AD VTYT+LI G CK +++++    L  M+ +G  P+  TY  ++ A   +  L E
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             + + EM      P+V  Y V+I   CK G + EAV + ++M    + P   ++  ++ 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLIS 123

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G        EA +  +EMV  G +  P   T   L+    +++K + A  V+  +V +G 
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCI--PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMM-DADVMPQPDTFAKLMRGLKKLYNRQIAA 580
             +V  ++  I  L   G +KEA      M+     MP   T+  L+ G  ++     A 
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAM 241

Query: 581 EITEKVRKMAAERQI 595
            + E++ +  +   +
Sbjct: 242 NLLERMAETGSSPDV 256


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 225/466 (48%), Gaps = 39/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+ +  V +L  +M      P + T     IL+  F   + +  A  VL 
Sbjct: 62  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLN---ILINSFCHLQRLGFAFSVLA 118

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +P+   F  L+  LC    + E   LFD+M  E F+P++  + +L+ G CK G
Sbjct: 119 KILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVG 178

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +PD+VVY +++    +  ++T AF L  EM  +G  P+  +Y 
Sbjct: 179 STSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYN 238

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI ALC + + +       EM  S    +VV ++T++   CK  K+   ++++D MI+R
Sbjct: 239 SLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR 298

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H  + E++E V++   M   G  PDV +Y+ +I   CK+  +++A
Sbjct: 299 GVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKA 358

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-------------- 483
           + ++ EM    L P T ++  ++HG    G L +A   F EMV RG              
Sbjct: 359 MYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 418

Query: 484 ------------LLSA-------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                       LL A       P       +++ + RA ++E A+D++S + +KG   N
Sbjct: 419 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 478

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V+ +TI I+ L   G + EA     +M      P   T+  + RG 
Sbjct: 479 VWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGF 524



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 199/412 (48%), Gaps = 12/412 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y  LI  L K+    A   L+  M +   +P ++   V+  ++      R
Sbjct: 161 QPNVV----TYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVV---VYTSIIDSLCKDR 213

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V +A  +  EM   G  P  F +  L+ ALC     K    L +EM   +  P++  F+
Sbjct: 214 QVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS 273

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CKEGK++EA  V+  M   G EP++V YN L+ G+    +M +A ++   M  K
Sbjct: 274 TVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK 333

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  SY+ LI   C+++++E+A   F EM R     + VTY+TL+ G C   ++   
Sbjct: 334 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDA 393

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+ RG +P+ ++Y  ++    K   L+E + L+  +      PD+  Y +VI  
Sbjct: 394 IALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDG 453

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ GEL+ A ++++ + +  L P   ++ +M++G   QG L EA + F EM  +G   +
Sbjct: 454 MCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY--S 511

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           P   T   +    LR  +      +   ++ +G   +V   T+ +  L  +G
Sbjct: 512 PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG 563



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 164/342 (47%), Gaps = 4/342 (1%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P++     L+  +C   +L  A  VL ++   G +P+I  +N L+ G    GK+ +   L
Sbjct: 92  PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 151

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             +M  +G  PN  +Y  LI  LC++     A R    ME+  C+ DVV YT++I   CK
Sbjct: 152 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 211

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
            R++ + + +   MI +GI P+  TY  ++ A     E +    L+ EM     +P+V  
Sbjct: 212 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 271

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           ++ V+   CK G++ EA +V + M    + P   ++  ++ G   +  + EA + F  MV
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 331

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            +G   AP   +   L+N   + Q++E A  ++  +  K    N   ++  +H L   G 
Sbjct: 332 CKGF--APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 389

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           +++A +   +M+    +P   ++  L+  L K  NR++   I
Sbjct: 390 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCK--NRRLDEAI 429



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 15/330 (4%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I  +  LL    +M   +    L  +M   G  PN  +  +LI + C ++++  A   
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + ++ T+ TLI G C   KI     + D MI  G  PN +TY  ++    K
Sbjct: 117 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCK 176

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+  M +  C PDV  Y  +I   CK  ++ +A N+++EM    +SP   +
Sbjct: 177 VGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFT 236

Query: 456 FVVMVHGFLGQGCLIEACEY------FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  ++H       L   CE+        EMV   ++  P       ++++L +  KV  A
Sbjct: 237 YNSLIHA------LCNLCEWKHVTALLNEMVNSKIM--PNVVIFSTVVDALCKEGKVMEA 288

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            DV   ++ +G E NV  +   +        + EA      M+     P   +++ L+ G
Sbjct: 289 HDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLING 348

Query: 570 LKKLYNRQIAAEITEKV-RKMAAERQITFK 598
             K+   + A  + E++ RK      +T+ 
Sbjct: 349 YCKIQRIEKAMYLFEEMCRKELIPNTVTYS 378



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 2/289 (0%)

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           +N   S       + DA      M      P+   +T L+ ++ +M+          +M+
Sbjct: 27  HNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD 86

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   ++ T   LI+ FC  +++   + +L  +++ G  PN  T+  ++     + ++ 
Sbjct: 87  SFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIG 146

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E + L  +M   G  P+V  Y  +I   CK+G    A+ +   ME  +  P    +  ++
Sbjct: 147 EVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSII 206

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
                   + +A   F EM+ +G+  +P   T  +L+++L    + +    + + +V   
Sbjct: 207 DSLCKDRQVTQAFNLFSEMIHQGI--SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 264

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
              NV  ++  + +L   G V EA      M+   V P   T+  LM G
Sbjct: 265 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 313



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 3/236 (1%)

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D      + M+     P+   +  ++++  K +     + L  +M   G  P++   N+
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 99

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   C L  L  A +V  ++      P   +F  ++ G   +G + E    F +M+G G
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T   L+N L +      A  +   +    C+ +V  +T  I SL  +  V +
Sbjct: 160 F--QPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN-RQIAAEITEKVRKMAAERQITFK 598
           A +   +M+   + P   T+  L+  L  L   + + A + E V        + F 
Sbjct: 218 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS 273


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 233/453 (51%), Gaps = 4/453 (0%)

Query: 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG 204
           +++  K+R+F     ++ EMR E+   + T  + +L+     +  V++A     +M  YG
Sbjct: 229 LEAYCKVREFDTAKKVLVEMR-ERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG 287

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAK 263
             PD F +G L++ LCK+    EA  L DEM     KP++  + +L+ G+ +EG   EA 
Sbjct: 288 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 347

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            ++ +M  AG +P+ + Y+NL+ G  +MG+M  A  LLK+M R    P+  +Y ++I+  
Sbjct: 348 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH 407

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            R    ++A R   EME +G   +V TY+ +I G C+S + ++  ++L+ M  +G+ PN 
Sbjct: 408 FRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 467

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
             Y  ++  + ++  +    E+  +M K+  +PD+  YN +I    K+G ++E+   + +
Sbjct: 468 FVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ 527

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M+   L P   ++  ++HG+L  G L  A +  + M+  GL   P       LL S  ++
Sbjct: 528 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL--KPNDVIYIDLLESYFKS 585

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
             +E     +  ++ +G  L+   + I IH+L S+G+++ A      +     +P    +
Sbjct: 586 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVY 645

Query: 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           + L+ GL K  +R+ A  I +++ K   +  I 
Sbjct: 646 SSLISGLCKTADREKAFGILDEMSKKGVDPNIV 678



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 195/419 (46%), Gaps = 13/419 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A   PN V++Y +   +I  L +  +      L+EEM  +  KP      V+  L+  + 
Sbjct: 426 AGISPN-VYTYSI---MIHGLCQSGEPEKASDLLEEMTTKGLKPNAF---VYAPLISGYC 478

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
               V  A E+ D+M K    PD + +  L+  L K   V+E+ K F +M+ER   P+  
Sbjct: 479 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 538

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++ L++G+ K G L  A+ ++ +M D G +P+ V+Y +LL  Y +   +       K M
Sbjct: 539 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 598

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             +G   +   Y +LI  L     ME A R    +E++G   DV  Y++LISG CK+   
Sbjct: 599 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR 658

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++ + ILD M ++G+ PN + Y  ++    K  ++     +   +   G VP+   Y  +
Sbjct: 659 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 718

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I  +CK+G++  A  ++NEM A  ++P    + V+  G    G L +A    +EM  RG 
Sbjct: 719 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 778

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            S   +     L++   +  K++    +   I+ +G   N       I  L   G + E
Sbjct: 779 ASISSFNN---LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSE 834



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 169/343 (49%), Gaps = 3/343 (0%)

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
           RH  S L  +CK  +   AK VLV+M++ G   + V YN L++G  + G + +AF   K+
Sbjct: 224 RH-GSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKD 282

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M   G  P+  +Y  LI  LC+  +  EA     EM  +  + +VV Y  LI GF +   
Sbjct: 283 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 342

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            D  ++++  M+  G+ PN++TY +++    K  +++    L+ +M +    PD   YN+
Sbjct: 343 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 402

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I    +    K+A  + +EME A +SP   ++ +M+HG    G   +A +  +EM  +G
Sbjct: 403 IIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG 462

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           L   P       L++   R   V +A +++  +       ++Y +   I  L   G V+E
Sbjct: 463 L--KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEE 520

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +  Y   M +  ++P   T++ L+ G  K  + + A ++ +++
Sbjct: 521 STKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 563



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 203/455 (44%), Gaps = 17/455 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI  L K R+     AL++EM   + KP ++   V+  L+  F       +A +++ 
Sbjct: 295 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVV---VYANLIDGFMREGNADEAFKMIK 351

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +P++  +  L+  LCK   +  A+ L  +M R+  +P    +  ++ G  +  
Sbjct: 352 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHH 411

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              +A  +L +M++AG  P++  Y+ ++ G  Q G+   A +LL+EM  KG  PNA  Y 
Sbjct: 412 SKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA 471

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   CR   +  A   F +M +     D+  Y +LI G  K  +++   +    M +R
Sbjct: 472 PLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQER 531

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LPN+ TY  ++  + K  +LE   +L+  M   G  P+   Y  ++    K  ++++ 
Sbjct: 532 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 591

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            + +  M    +      + +++H     G +  A      +   G  S P      +L+
Sbjct: 592 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG--SVPDVHVYSSLI 649

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + L +    E A  +   +  KG + N+  +   I  L  +G +  A +    ++   ++
Sbjct: 650 SGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLV 709

Query: 558 PQPDTFAKLMRGLKK---------LYNRQIAAEIT 583
           P   T+  L+ G  K         LYN  +A  IT
Sbjct: 710 PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGIT 744



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 165/369 (44%), Gaps = 60/369 (16%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V    +Y  L++S  K      V +  + M  ++  ++   ++ IL+   +S+  +
Sbjct: 569 KPNDV----IYIDLLESYFKSDDIEKVSSTFKSML-DQGVMLDNRIYGILIHNLSSSGNM 623

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           + A  VL  + K G  PD  V+  L+  LCK +  ++A  + DEM ++   P++  + +L
Sbjct: 624 EAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 683

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK G +  A+ V   +   G  P+ V Y +L+ G  ++G +++AF L  EM   G 
Sbjct: 684 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 743

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+A  Y+VL         +E+A     EM   G  A + ++  L+ GFCK  K+    +
Sbjct: 744 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLK 802

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC----VELMG---------------EMR 410
           +L  ++ RG++PN LT  +I+    +  +L E     VEL                 +M 
Sbjct: 803 LLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMI 862

Query: 411 KIGCVP------------------------DV----------SNYNVVIRLACKLGELKE 436
             G +P                        DV          S+Y  ++   C+ G+L E
Sbjct: 863 NQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSE 922

Query: 437 AVNVWNEME 445
           A+N+  EM+
Sbjct: 923 ALNLLKEMD 931



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 112/530 (21%), Positives = 212/530 (40%), Gaps = 63/530 (11%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            Y +LI  LSK+ +         +M +E+  L     +  L+  +     ++ A +++  M
Sbjct: 505  YNSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 563

Query: 201  PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
               G +P++ ++  LL++  K+  +++ +  F  M ++      R +  L++     G +
Sbjct: 564  LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 623

Query: 260  VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
              A  VL  ++  G  PD+ VY++L+SG  +      AF +L EM +KG DPN   Y  L
Sbjct: 624  EAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 683

Query: 320  IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
            I  LC+   +  A   F  +   G   + VTYT+LI G CK   I   + + + M+  GI
Sbjct: 684  IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 743

Query: 380  LPNQLTY--------------LHIMLAHE--------------------KKEELEECVEL 405
             P+   Y                + L  E                    K+ +++E ++L
Sbjct: 744  TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKL 803

Query: 406  MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
            +  +   G VP+      +I    + G+L E   ++ E++  +       F  +    + 
Sbjct: 804  LHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMIN 863

Query: 466  QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            QG +    +   +M+        + G L           K  M +DV   IV K   +  
Sbjct: 864  QGKI--PLDVVDDMIRDHC----KEGNL----------DKALMLRDV---IVAKSAPMGC 904

Query: 526  YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL----MRGLKKLYNRQIAAE 581
             ++   + +L   G + EA +  L  MD     QP   A L     R    + N+ +   
Sbjct: 905  SSYLAIVDNLCRKGKLSEALN-LLKEMDKRGNLQPTLVALLGIFWFRRHHHILNKVVFTV 963

Query: 582  ITEKVRKMAAERQITFK---MYKRRGERDLKEKAKKQVDGRKRRARQRRW 628
                +   +  + +TF    M K+RG+   +  + + +D        +++
Sbjct: 964  FAPSLMFASLAKTVTFSDSLMKKKRGQMYHQPNSIQGLDDSNEEHHAKKF 1013


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 200/386 (51%), Gaps = 7/386 (1%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAK 263
           C  D   +  L+  LCK   +++A     +M  + F P +  +T++++  C E +L EA+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
             L +M +    P++V Y  L+ G  + G++ +A  LL +MR+K C P A +Y  LI  L
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGL 125

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           C+ E+  EA     EM  SGC  D+ TYTTLI+GFCKS+K D    + + ++ RG  P+ 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           +TY  ++    K+  L+E ++L G M K G C+P+   YN +I   C++G++ EA+N+  
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M     SP   ++  +++GF     L +A +   +M  +GL   P   T  +L++ L R
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL--TPDVVTFTSLMDGLCR 303

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             ++  A  +   +  K C   VY +   +        ++EA  + L+ MD    P   +
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP--PNVVS 361

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRK 588
           F  ++RGL K+     A E+ E+ R+
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARR 387



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 219/451 (48%), Gaps = 17/451 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I +L    +       +EEM  R   P ++T   + +L+        V +A+ +L 
Sbjct: 49  YTAVIHALCVENRLHEARKFLEEMANRNLTPNVVT---YTVLIDGLCKGGRVDEAVALLS 105

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K  C P    +  L+  LCK     EA  L +EM      P +  +T+L+ G+CK  
Sbjct: 106 KMRK-KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSK 164

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSY 316
           K  +A  V  Q+   GF PD+V Y+ L+ G  + G++ +A +L   M + G C PN  +Y
Sbjct: 165 KSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI   CRM KM+EA      M  +G   DVVTYTTL++GFCK  ++D  Y++L+ M +
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ P+ +T+  +M    ++  L + V ++GEMR+  C P V  YN ++   C+  +L+E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A      +E     P   SF +M+ G        EA E  +E   R     P       +
Sbjct: 345 ARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEE--ARRRRCNPDVVMYTTV 400

Query: 497 LNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           ++ L R +KV+ A  V+  ++ + GC  N   ++  I  L + G +  A  Y    ++  
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGY----IEKG 456

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            +P   T+  L+   +K    + A E+ + +
Sbjct: 457 CVPNIGTYNLLIDAFRKANRDEDARELLDDM 487



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 188/370 (50%), Gaps = 7/370 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L++     + +++A+  L +M   G  PD + +  ++ ALC  + + EA K  +EM 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R   P++  +T L+ G CK G++ EA  +L +M+     P  V YN+L+SG  +  + +
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERAS 132

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A++LL+EM   GC P+  +YT LI   C+ +K ++A R F ++   G   DVVTY+ LI
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 356 SGFCKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
            G CK  ++    ++   MI+ G  +PN +TY  ++    +  +++E + L+  M + G 
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PDV  Y  ++   CKL  L +A ++ N+M    L+P   +F  ++ G   +  L +A  
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
              EM  R    +P   T   +L+   RA ++E A+     +    C  NV ++ I I  
Sbjct: 313 ILGEM--RRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRG 368

Query: 535 LFSNGHVKEA 544
           L       EA
Sbjct: 369 LCKVNRSSEA 378



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 162/305 (53%), Gaps = 17/305 (5%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQ 170
           R  +A +L  R     S  PN V     Y +LI    +M K      L+E M +    P 
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNTV----TYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           ++T   +  LM  F     +  A ++L++M + G  PD   F  L+D LC+ + + +A  
Sbjct: 256 VVT---YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +  EMR +   P++  + ++L G+C+  +L EA+  +++  D    P++V +N ++ G  
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC--PPNVVSFNIMIRGLC 370

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEADV 348
           ++ + ++A EL++E RR+ C+P+   YT +I  LCR +K++EA R + +M E  GC  + 
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           +TY+TLI+G C +  +DR        I++G +PN  TY  ++ A  K    E+  EL+ +
Sbjct: 431 ITYSTLITGLCNAGMLDRAR----GYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDD 486

Query: 409 MRKIG 413
           M + G
Sbjct: 487 MVQRG 491



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  +  +YT LIQ LC+++++E+A     +M   G   DV TYT +I   C   ++    
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           + L+ M  R + PN +TY  ++    K   ++E V L+ +MRK  CVP    YN +I   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGL 125

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK     EA ++  EM  +   P   ++  ++ GF       +A   F+++V RG    P
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF--RP 183

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSY 547
              T   L++ L +  +++ A D++  ++  G C  N   +   I      G + EA + 
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNL 243

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV-RKMAAERQITF 597
              M +    P   T+  LM G  KL     A ++  ++ RK      +TF
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           + C AD VTYT+LI G CK +++++    L  M+ +G  P+  TY  ++ A   +  L E
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE 64

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             + + EM      P+V  Y V+I   CK G + EAV + ++M    + P   ++  ++ 
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLIS 123

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G        EA +  +EMV  G +  P   T   L+    +++K + A  V+  +V +G 
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCI--PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMM-DADVMPQPDTFAKLMRGLKKLYNRQIAA 580
             +V  ++  I  L   G +KEA      M+     MP   T+  L+ G  ++     A 
Sbjct: 182 RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAM 241

Query: 581 EITEKVRKMAAERQI 595
            + E++ +  +   +
Sbjct: 242 NLLERMAETGSSPDV 256


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 225/466 (48%), Gaps = 39/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+ +  V +L  +M      P + T     IL+  F   + +  A  VL 
Sbjct: 71  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLN---ILINSFCHLQRLGFAFSVLA 127

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +P+   F  L+  LC    + E   LFD+M  E F+P++  + +L+ G CK G
Sbjct: 128 KILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVG 187

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +PD+VVY +++    +  ++T AF L  EM  +G  P+  +Y 
Sbjct: 188 STSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYN 247

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI ALC + + +       EM  S    +VV ++T++   CK  K+   ++++D MI+R
Sbjct: 248 SLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR 307

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H  + E++E V++   M   G  PDV +Y+ +I   CK+  +++A
Sbjct: 308 GVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKA 367

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-------------- 483
           + ++ EM    L P T ++  ++HG    G L +A   F EMV RG              
Sbjct: 368 MYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 427

Query: 484 ------------LLSA-------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                       LL A       P       +++ + RA ++E A+D++S + +KG   N
Sbjct: 428 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 487

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V+ +TI I+ L   G + EA     +M      P   T+  + RG 
Sbjct: 488 VWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGF 533



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 199/412 (48%), Gaps = 12/412 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y  LI  L K+    A   L+  M +   +P ++   V+  ++      R
Sbjct: 170 QPNVV----TYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVV---VYTSIIDSLCKDR 222

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V +A  +  EM   G  P  F +  L+ ALC     K    L +EM   +  P++  F+
Sbjct: 223 QVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS 282

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CKEGK++EA  V+  M   G EP++V YN L+ G+    +M +A ++   M  K
Sbjct: 283 TVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK 342

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  SY+ LI   C+++++E+A   F EM R     + VTY+TL+ G C   ++   
Sbjct: 343 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDA 402

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+ RG +P+ ++Y  ++    K   L+E + L+  +      PD+  Y +VI  
Sbjct: 403 IALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDG 462

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ GEL+ A ++++ + +  L P   ++ +M++G   QG L EA + F EM  +G   +
Sbjct: 463 MCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY--S 520

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           P   T   +    LR  +      +   ++ +G   +V   T+ +  L  +G
Sbjct: 521 PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG 572



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 164/342 (47%), Gaps = 4/342 (1%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P++     L+  +C   +L  A  VL ++   G +P+I  +N L+ G    GK+ +   L
Sbjct: 101 PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 160

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             +M  +G  PN  +Y  LI  LC++     A R    ME+  C+ DVV YT++I   CK
Sbjct: 161 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 220

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
            R++ + + +   MI +GI P+  TY  ++ A     E +    L+ EM     +P+V  
Sbjct: 221 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 280

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           ++ V+   CK G++ EA +V + M    + P   ++  ++ G   +  + EA + F  MV
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 340

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            +G   AP   +   L+N   + Q++E A  ++  +  K    N   ++  +H L   G 
Sbjct: 341 CKGF--APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 398

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           +++A +   +M+    +P   ++  L+  L K  NR++   I
Sbjct: 399 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCK--NRRLDEAI 438



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 15/330 (4%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I  +  LL    +M   +    L  +M   G  PN  +  +LI + C ++++  A   
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + ++ T+ TLI G C   KI     + D MI  G  PN +TY  ++    K
Sbjct: 126 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCK 185

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+  M +  C PDV  Y  +I   CK  ++ +A N+++EM    +SP   +
Sbjct: 186 VGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFT 245

Query: 456 FVVMVHGFLGQGCLIEACEY------FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  ++H       L   CE+        EMV   ++  P       ++++L +  KV  A
Sbjct: 246 YNSLIHA------LCNLCEWKHVTALLNEMVNSKIM--PNVVIFSTVVDALCKEGKVMEA 297

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            DV   ++ +G E NV  +   +        + EA      M+     P   +++ L+ G
Sbjct: 298 HDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLING 357

Query: 570 LKKLYNRQIAAEITEKV-RKMAAERQITFK 598
             K+   + A  + E++ RK      +T+ 
Sbjct: 358 YCKIQRIEKAMYLFEEMCRKELIPNTVTYS 387



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 2/289 (0%)

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           +N   S       + DA      M      P+   +T L+ ++ +M+          +M+
Sbjct: 36  HNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD 95

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   ++ T   LI+ FC  +++   + +L  +++ G  PN  T+  ++     + ++ 
Sbjct: 96  SFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIG 155

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E + L  +M   G  P+V  Y  +I   CK+G    A+ +   ME  +  P    +  ++
Sbjct: 156 EVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSII 215

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
                   + +A   F EM+ +G+  +P   T  +L+++L    + +    + + +V   
Sbjct: 216 DSLCKDRQVTQAFNLFSEMIHQGI--SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 273

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
              NV  ++  + +L   G V EA      M+   V P   T+  LM G
Sbjct: 274 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 322



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 3/236 (1%)

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D      + M+     P+   +  ++++  K +     + L  +M   G  P++   N+
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   C L  L  A +V  ++      P   +F  ++ G   +G + E    F +M+G G
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T   L+N L +      A  +   +    C+ +V  +T  I SL  +  V +
Sbjct: 169 F--QPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN-RQIAAEITEKVRKMAAERQITFK 598
           A +   +M+   + P   T+  L+  L  L   + + A + E V        + F 
Sbjct: 227 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS 282


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 242/508 (47%), Gaps = 32/508 (6%)

Query: 71  SHDVEKIFRILKKFH-----SRLPKLELALQHSGVVLRPGLT-ERVINRCGDAGNLGYRY 124
           +HD  ++F  +   H     +   K+  AL   G VL  GL   +VI R G + NL + Y
Sbjct: 168 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQR-GMSINL-FTY 225

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRR 183
            +W                 I+ L +  +      L++ MR    P ++T   +  L+R 
Sbjct: 226 NIW-----------------IRGLCEAGRLPEAVRLVDGMRAYAVPDVVT---YNTLIRG 265

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPS 242
                M ++A+  L  M   GC PD+F +  ++D  CK S V+EA +L  D + + F P 
Sbjct: 266 LCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD 325

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + SL+ G C EG +  A  +  + +  G +PDIVVYN+L+ G    G +  A +++ 
Sbjct: 326 QVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMN 385

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM  +GC P+  +Y ++I  LC+M  + +A     +    G   DV T+ TLI G+CK  
Sbjct: 386 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 445

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K+D   ++++ M + GI P+ +TY  ++    K  ++ E  E   EM   GC P+   YN
Sbjct: 446 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 505

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I   C+  +++EA  V  +M    L P   SF  +++GF   G L  A   F+++  +
Sbjct: 506 ILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEK 565

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G  +     T   L+ +      + MA+ ++  +++KG   + Y + + I       +V 
Sbjct: 566 GYSATAD--TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 623

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
            A  + ++M+    +P   TF +++  L
Sbjct: 624 RAYMHLVEMIKKGFIPSMSTFGRVINSL 651



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 172/343 (50%), Gaps = 12/343 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++   V+  L++      ++  A++V++EM + GC PD   +  +++ LCK  ++ +
Sbjct: 358 KPDIV---VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISD 414

Query: 228 AAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +  D + + + P +  F +L+ G+CK  KL  A  ++ +M + G  PD + YN++L+
Sbjct: 415 ATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLN 474

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  + GK+ +  E  +EM  KGC PN  +Y +LI+  CR  KMEEA++  V+M + G   
Sbjct: 475 GLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHP 534

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D V++ TLI GFC++  ++  Y +   + ++G      T+  ++ A   K  +    ++ 
Sbjct: 535 DAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIF 594

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM   G   D   Y V+I  +CK   +  A     EM      P   +F  +++     
Sbjct: 595 DEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVN 654

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
             + +A      MV        + G +  +++++L A K E+A
Sbjct: 655 HRVFQAVGIIHIMV--------KIGVVPEVVDTILNADKKEIA 689



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 185/397 (46%), Gaps = 2/397 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V +A  +L ++ + G   + F +   +  LC+   + EA +L D MR    P +  + +L
Sbjct: 203 VLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTL 262

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK+    EA + L +M + G  PD   YN ++ GY ++  + +A ELLK+   KG 
Sbjct: 263 IRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGF 322

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y  LI  LC    +E A   F E +  G + D+V Y +L+ G C    I    +
Sbjct: 323 VPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQ 382

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +++ M + G  P+  TY  ++    K   + +   +M +    G +PDV  +N +I   C
Sbjct: 383 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYC 442

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K  +L  A+ +   M    ++P T ++  +++G    G + E  E F+EM+ +G    P 
Sbjct: 443 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPN 500

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T   L+ +  R+ K+E A  V   +  +G   +  ++   I+    NG ++ A     
Sbjct: 501 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 560

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            + +       DTF  L+       N  +A +I +++
Sbjct: 561 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEM 597



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 197/460 (42%), Gaps = 9/460 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALI+ L+   +  AV A +   R          ++V  +R +A A  ++ A++  + M
Sbjct: 18  YCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAFERM 77

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
             + C P    +  ++DAL   +   +A K++  M      P L   T  L  +C    L
Sbjct: 78  DLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFC----L 133

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
               ++ +++  A      V Y  ++ G    G   DA +L  +M      PN  ++  +
Sbjct: 134 TARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKV 193

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+   + EA     ++ + G   ++ TY   I G C++ ++     ++D M    +
Sbjct: 194 LHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV 253

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    KK   +E +  +  M   GC+PD   YN +I   CK+  ++EA  
Sbjct: 254 -PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 312

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +       P   ++  +++G   +G +  A E F E   +G+   P      +L+  
Sbjct: 313 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI--KPDIVVYNSLVKG 370

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L     +  A  V + +  +GC  ++  + I I+ L   G++ +A     D +    +P 
Sbjct: 371 LCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPD 430

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA-AERQITFK 598
             TF  L+ G  K      A ++ E++ +   A   IT+ 
Sbjct: 431 VFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYN 470


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 225/468 (48%), Gaps = 43/468 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  L+ S++K +++  V++L  +M       I  +V+   IL+  F        A  VL 
Sbjct: 70  FNRLLTSIAKTKQYPTVFSLSNQMDSFG---IPPDVYTLNILINSFCHLNRPGFAFSVLA 126

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  LC    + +A  LFD+M  E F+P++  + +L+ G CK G
Sbjct: 127 KILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 186

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +PD+VVY +++    +  ++T+AF L  +M  +G  P+  +YT
Sbjct: 187 NTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT 246

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI +LC + + +       +M  S    DVV ++T++   CK  KI   ++++D MI R
Sbjct: 247 SLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR 306

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H  + E++E V++   M   G  P+V +YN +I   CK+  + +A
Sbjct: 307 GVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKA 366

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++ EM    L P T ++  ++HG    G L +A   F EMV  G +  P   T + LL
Sbjct: 367 TYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQI--PDLATYRILL 424

Query: 498 NSL-----------------------------------LRAQKVEMAKDVWSCIVTKGCE 522
           + L                                    RA ++E A+D++S + +KG  
Sbjct: 425 DYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLR 484

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            NV  +TI I+ L   G + EA    ++M      P   T+  + +GL
Sbjct: 485 PNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 532



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 203/426 (47%), Gaps = 13/426 (3%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQ 170
           + GDA +L +   +    QPN V     Y  LI  L K+    A   L+  M +   +P 
Sbjct: 152 KIGDALHL-FDKMIGEGFQPNVV----TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPD 206

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           ++   V+  ++      R V +A  +  +M   G  PD F +  L+ +LC     K    
Sbjct: 207 VV---VYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT 263

Query: 231 LFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           L ++M   +  P +  F++++   CKEGK+ EA  V+  M   G EP++V YN L+ G+ 
Sbjct: 264 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC 323

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
              +M +A ++   M   G  PN  SY  LI   C++++M++A   F EM +     + V
Sbjct: 324 LQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTV 383

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY TL+ G C   ++     +   M+  G +P+  TY  ++    KK  L+E + L+  +
Sbjct: 384 TYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTI 443

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
                 PD+  Y +VI   C+ GEL+ A ++++ + +  L P   ++ +M++G   +G L
Sbjct: 444 EGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLL 503

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA + F EM G G   +P   T   +   LL+ ++   A  +   ++ +G   +V   T
Sbjct: 504 DEANKLFMEMDGNG--CSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTT 561

Query: 530 IWIHSL 535
           + +  L
Sbjct: 562 LLVEML 567



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 173/396 (43%), Gaps = 7/396 (1%)

Query: 182 RRFASARM----VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
            RF S  +    +  A+   + M      P    F  LL ++ K         L ++M  
Sbjct: 36  NRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDS 95

Query: 238 -RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
               P +     L+  +C   +   A  VL ++   G +PD   +  L+ G    GK+ D
Sbjct: 96  FGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGD 155

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A  L  +M  +G  PN  +Y  LI  LC++     A R    ME+  C+ DVV YT++I 
Sbjct: 156 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIID 215

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             CK R++   + +   M+ +GI P+  TY  ++ +     E +    L+ +M     +P
Sbjct: 216 SLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMP 275

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           DV  ++ V+   CK G++ EA +V + M    + P   ++  ++ G   Q  + EA + F
Sbjct: 276 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 335

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             MV  G   AP   +   L+N   + Q+++ A  ++  +  K    N   +   +H L 
Sbjct: 336 DTMVHNGY--APNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLC 393

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             G +++A +   +M+    +P   T+  L+  L K
Sbjct: 394 HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 429



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 144/327 (44%), Gaps = 41/327 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI SL  + ++  V  L+ +M   K  P ++   +F  ++        + +A +V+D
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVV---IFSTVVDALCKEGKITEAHDVVD 301

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M   G EP+   +  L+D  C  S + EA K+FD M    + P++  + +L+ G+CK  
Sbjct: 302 MMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQ 361

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--------- 308
           ++ +A Y+  +M      P+ V YN L+ G   +G++ DA  L  EM   G         
Sbjct: 362 RMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYR 421

Query: 309 --------------------------CDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                                      DP+   YT++I  +CR  ++E A   F  +   
Sbjct: 422 ILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSK 481

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   +V TYT +I+G C+   +D   ++   M   G  P+  TY  I     + +E    
Sbjct: 482 GLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRA 541

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLAC 429
           ++L+ EM   G   DVS   +++ + C
Sbjct: 542 IQLLQEMLARGFSADVSTTTLLVEMLC 568



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 6/246 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN +     Y  LI    K+++      L EEM  +K  +  T  +  LM        ++
Sbjct: 345 PNVIS----YNTLINGYCKIQRMDKATYLFEEM-CQKELIPNTVTYNTLMHGLCHVGRLQ 399

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLL 250
            AI +  EM  +G  PD   +  LLD LCK S + EA  L   +      P ++ +T ++
Sbjct: 400 DAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 459

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C+ G+L  A+ +   +   G  P++  Y  +++G  + G + +A +L  EM   GC 
Sbjct: 460 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 519

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  + Q L + ++   A +   EM   G  ADV T T L+   C  +      +I
Sbjct: 520 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQI 579

Query: 371 LDSMIQ 376
           L   +Q
Sbjct: 580 LSEFVQ 585



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 11/232 (4%)

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D      + M+     P+ + +  ++ +  K ++      L  +M   G  PDV   N+
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   C L     A +V  ++    L P T +F  ++ G   +G + +A   F +M+G G
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T   L+N L +      A  +   +    C+ +V  +T  I SL  +  V E
Sbjct: 168 F--QPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 225

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIAAEITEKV 586
           A +    M+   + P   T+  L+  L           L N+ I ++I   V
Sbjct: 226 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 277


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 214/435 (49%), Gaps = 34/435 (7%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           +L+   + +  +++A E++ +M + G E   + +  L+   C+   ++EA++L +EM  R
Sbjct: 242 VLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSR 301

Query: 239 FK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P++  + +++YG CK G++ +A+ +L  M +    PD+V YN L+ GY ++G + +A
Sbjct: 302 GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEA 361

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           F L  E+R +   P+  +Y  LI  LCR+  ++ A R   EM + G + DV T+TT + G
Sbjct: 362 FLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRG 421

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           FCK   +    E+ D M+ RG+ P++  Y+  ++   K  +  +   +  EM   G  PD
Sbjct: 422 FCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPD 481

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YNV I    KLG LKEA  +  +M    L P   ++  ++H  L  G L +A   F 
Sbjct: 482 LITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFL 541

Query: 478 EMVGRGLLSA---------------------------------PQYGTLKALLNSLLRAQ 504
           EM+ +G+  +                                 P   T  AL+N L + +
Sbjct: 542 EMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVR 601

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           K++ A + ++ +  KG   N Y +TI I+   + GH +EA     DM+D ++ P   T  
Sbjct: 602 KMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHR 661

Query: 565 KLMRGLKKLYNRQIA 579
            L++ L K Y   + 
Sbjct: 662 SLLKHLNKDYKLHVV 676



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 239/494 (48%), Gaps = 25/494 (5%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKF 154
           L H+ V   P L  RV+N   +   +  R++ WA +Q  +  S   Y  ++  L++    
Sbjct: 39  LFHAAVA-EPKLLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLM 97

Query: 155 GAVWALMEEMRKEKPQ------LITTEVFV--------ILMRRFASARMVKKAIEVLDEM 200
            + + +ME++   K +      + ++EV +        +L+  +    +++K + V  +M
Sbjct: 98  RSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLLEKCLLVFYKM 157

Query: 201 PKYGCEPD----EFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCK 255
              G  PD      V   L D   +++++  A ++++ M E    P++  + ++L  +CK
Sbjct: 158 VSKGLLPDVKNCNRVLRLLRD---RDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCK 214

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +G + EA  +L QM+  G  P+ V YN L++G +  G+M  A EL+++M R G + +  +
Sbjct: 215 KGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYT 274

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI+  C   ++EEA+R   EM   G    VVTY T++ G CK  ++    ++LD M+
Sbjct: 275 YDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMV 334

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            + ++P+ ++Y  ++  + +   + E   L  E+R     P V  YN +I   C+LG+L 
Sbjct: 335 NKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLD 394

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A+ + +EM      P   +F   V GF   G L  A E F EM+ RG L   ++  +  
Sbjct: 395 VAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRG-LQPDRFAYITR 453

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           ++   L+      A  +   ++ +G   ++  + ++I  L   G++KEA      M+   
Sbjct: 454 IVGE-LKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNG 512

Query: 556 VMPQPDTFAKLMRG 569
           ++P   T+  ++  
Sbjct: 513 LVPDHVTYTSIIHA 526



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 183/379 (48%), Gaps = 8/379 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++  L K  +      L++ M  +   P L++    +    R  +   + +A  +  
Sbjct: 310 YNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN---IGEAFLLFA 366

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           E+      P    +  L+D LC+   +  A +L DEM +    P +  FT+ + G+CK G
Sbjct: 367 ELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMG 426

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  AK +  +M + G +PD   Y   + G  ++G  + AF + +EM  +G  P+  +Y 
Sbjct: 427 NLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYN 486

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           V I  L ++  ++EA+    +M  +G   D VTYT++I     +  + +   +   M+ +
Sbjct: 487 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSK 546

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  ++ ++  +  L+  +    EM + G  P+V  YN +I   CK+ ++ +A
Sbjct: 547 GIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQA 606

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            N + EM+A  +SP   ++ ++++     G   EA   +K+M+ R +   P   T ++LL
Sbjct: 607 YNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI--QPDSCTHRSLL 664

Query: 498 NSLLRAQKVEMAKDVWSCI 516
             L +  K+ + + + + I
Sbjct: 665 KHLNKDYKLHVVRHLENVI 683



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 170/402 (42%), Gaps = 58/402 (14%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM---------------RERFKPSLRHFTS 248
           G +  E  +  +LD L +N  ++ A  + +++                E   PS++    
Sbjct: 76  GFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILD 135

Query: 249 LL-YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD-AFELLKEMRR 306
           LL + + K+  L +   V  +M   G  PD+   N +L          D A E+   M  
Sbjct: 136 LLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVE 195

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P   +Y  ++ + C+   ++EA +   +M+  GC  + VTY  L++G   S ++++
Sbjct: 196 CGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQ 255

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E++  M++ G+  +  TY  ++  + +K ++EE   L  EM   G VP V  YN ++ 
Sbjct: 256 AKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMY 315

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + +A  + + M   +L P   S+  +++G+   G + EA   F E+  R L  
Sbjct: 316 GLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSL-- 373

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           AP   T   L++ L R   +++A  +   ++  G                          
Sbjct: 374 APSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHG-------------------------- 407

Query: 547 YCLDMMDADVMPQPD--TFAKLMRGLKKLYNRQIAAEITEKV 586
                      P PD  TF   +RG  K+ N  +A E+ +++
Sbjct: 408 -----------PDPDVFTFTTFVRGFCKMGNLPMAKELFDEM 438


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 198/401 (49%), Gaps = 7/401 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS- 149
           +E AL   G+ L   L   V++R      +  R++ WA  Q +Y H    Y  ++  LS 
Sbjct: 10  MEKALGQLGIPLSTPLVTGVLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSS 69

Query: 150 ---KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
              K+++F  V  ++E M++     +  EV ++++R++    +            +   +
Sbjct: 70  TRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKYTEKYLTHVQKFARKRRIRVKTQ 129

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           P+   F  LLDALCK   V++A  L+ +MR+  KP+   +   ++GWC+         +L
Sbjct: 130 PEINAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVRNPTRGMKLL 189

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD---PNANSYTVLIQAL 323
            +M + G  PD   YN  +  Y + G +T+A +L + MR KG     P A +Y ++I AL
Sbjct: 190 EEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVAL 249

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            + ++MEE  +    M  SGC  DV TY  +I G C   KID  Y+ L+ M  +   P+ 
Sbjct: 250 AQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPDI 309

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +TY   +      ++ E+ ++L G M ++ C+P V  YN++I +  ++ +   A   W E
Sbjct: 310 VTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFETWQE 369

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           M+     P  D++ VM+ G      + +AC   +E++ +G+
Sbjct: 370 MDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGI 410



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 10/320 (3%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+I  +N LL    +   + DA  L K+MR K   PNA +Y + +   CR+       +
Sbjct: 129 QPEINAFNLLLDALCKCCLVEDAETLYKKMR-KTVKPNAETYNIFVFGWCRVRNPTRGMK 187

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIML 391
              EM   G   D   Y T I  +CK+  +    ++ + M  +G     P   TY  I++
Sbjct: 188 LLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIV 247

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  + + +EEC +L+G M   GC+PDV+ Y  +I   C  G++ EA     EM   S  P
Sbjct: 248 ALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRP 307

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGR--GLLSAPQYGTLKALLNSLLRAQKVEMA 509
                +V  + FL   C  +  E   ++ GR   L   P   T   L++        + A
Sbjct: 308 D----IVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGA 363

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            + W  +  +GC  ++  +++ I  LF+   V++AC    ++++  +      F   +  
Sbjct: 364 FETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGIKLPYKKFDSFLMQ 423

Query: 570 LKKLYNRQIAAEITEKVRKM 589
           L  + + Q    ++E +RK 
Sbjct: 424 LSVIGDLQAIHRVSEHMRKF 443


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 242/508 (47%), Gaps = 32/508 (6%)

Query: 71  SHDVEKIFRILKKFH-----SRLPKLELALQHSGVVLRPGLT-ERVINRCGDAGNLGYRY 124
           +HD  ++F  +   H     +   K+  AL   G VL  GL   +VI R G + NL + Y
Sbjct: 167 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQR-GMSINL-FTY 224

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRR 183
            +W                 I+ L +  +      L++ MR    P ++T   +  L+R 
Sbjct: 225 NIW-----------------IRGLCEAGRLPEAVRLVDGMRAYAVPDVVT---YNTLIRG 264

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPS 242
                M ++A+  L  M   GC PD+F +  ++D  CK S V+EA +L  D + + F P 
Sbjct: 265 LCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD 324

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + SL+ G C EG +  A  +  + +  G +PDIVVYN+L+ G    G +  A +++ 
Sbjct: 325 QVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMN 384

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM  +GC P+  +Y ++I  LC+M  + +A     +    G   DV T+ TLI G+CK  
Sbjct: 385 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 444

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K+D   ++++ M + GI P+ +TY  ++    K  ++ E  E   EM   GC P+   YN
Sbjct: 445 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 504

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I   C+  +++EA  V  +M    L P   SF  +++GF   G L  A   F+++  +
Sbjct: 505 ILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEK 564

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G  +     T   L+ +      + MA+ ++  +++KG   + Y + + I       +V 
Sbjct: 565 GYSATAD--TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 622

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
            A  + ++M+    +P   TF +++  L
Sbjct: 623 RAYMHLVEMIKKGFIPSMSTFGRVINSL 650



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 172/343 (50%), Gaps = 12/343 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++   V+  L++      ++  A++V++EM + GC PD   +  +++ LCK  ++ +
Sbjct: 357 KPDIV---VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISD 413

Query: 228 AAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +  D + + + P +  F +L+ G+CK  KL  A  ++ +M + G  PD + YN++L+
Sbjct: 414 ATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLN 473

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  + GK+ +  E  +EM  KGC PN  +Y +LI+  CR  KMEEA++  V+M + G   
Sbjct: 474 GLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHP 533

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D V++ TLI GFC++  ++  Y +   + ++G      T+  ++ A   K  +    ++ 
Sbjct: 534 DAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIF 593

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM   G   D   Y V+I  +CK   +  A     EM      P   +F  +++     
Sbjct: 594 DEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVN 653

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
             + +A      MV        + G +  +++++L A K E+A
Sbjct: 654 HRVFQAVGIIHIMV--------KIGVVPEVVDTILNADKKEIA 688



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 182/391 (46%), Gaps = 2/391 (0%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255
           +L ++ + G   + F +   +  LC+   + EA +L D MR    P +  + +L+ G CK
Sbjct: 208 LLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCK 267

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +    EA + L +M + G  PD   YN ++ GY ++  + +A ELLK+   KG  P+  +
Sbjct: 268 KSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVT 327

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI  LC    +E A   F E +  G + D+V Y +L+ G C    I    ++++ M 
Sbjct: 328 YCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMA 387

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  P+  TY  ++    K   + +   +M +    G +PDV  +N +I   CK  +L 
Sbjct: 388 EEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLD 447

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A+ +   M    ++P T ++  +++G    G + E  E F+EM+ +G    P   T   
Sbjct: 448 SALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPNPITYNI 505

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+ +  R+ K+E A  V   +  +G   +  ++   I+    NG ++ A      + +  
Sbjct: 506 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 565

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
                DTF  L+       N  +A +I +++
Sbjct: 566 YSATADTFNTLIGAFSGKLNMHMAEKIFDEM 596



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 192/447 (42%), Gaps = 8/447 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALI+ L+   +  AV A +   R          ++V  +R +A A  ++ A++  + M
Sbjct: 17  YCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAFERM 76

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
             + C P    +  ++DAL   +   +A K++  M      P L   T  L  +C    L
Sbjct: 77  DLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFC----L 132

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
               ++ +++  A      V Y  ++ G    G   DA +L  +M      PN  ++  +
Sbjct: 133 TARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKV 192

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+   + EA     ++ + G   ++ TY   I G C++ ++     ++D M    +
Sbjct: 193 LHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV 252

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    KK   +E +  +  M   GC+PD   YN +I   CK+  ++EA  
Sbjct: 253 -PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 311

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +       P   ++  +++G   +G +  A E F E   +G+   P      +L+  
Sbjct: 312 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI--KPDIVVYNSLVKG 369

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L     +  A  V + +  +GC  ++  + I I+ L   G++ +A     D +    +P 
Sbjct: 370 LCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPD 429

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             TF  L+ G  K      A ++ E++
Sbjct: 430 VFTFNTLIDGYCKRLKLDSALQLVERM 456


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 210/416 (50%), Gaps = 4/416 (0%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            +EEM   +        F +L+   +    VK A+EV+D M + G +PD + +  L+  L
Sbjct: 287 FIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGL 346

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           CK   V EA K+ ++M ER   P+   + +++   CKE ++ EA  + + +   G  PD+
Sbjct: 347 CKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDV 406

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             YN+L+ G       T A EL KEM+ KGC P+  +Y +LI +LC   K++EA     E
Sbjct: 407 CTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKE 466

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME SGC  +V+TY TLI GFCK+++I    EI D M  +G+  N +TY  ++    K E 
Sbjct: 467 MEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSER 526

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +EE  +LM +M   G  PD   YN ++   CK G++K+A ++   M +    P   ++  
Sbjct: 527 VEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGT 586

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G    G +  A +  + +  +G+   P       ++ +L R ++ + A  ++  ++ 
Sbjct: 587 LIAGLCKAGRVEAATKLLRTIQMKGINLTPH--AYNPVIQALFRRKRSKEAVRLFREMIE 644

Query: 519 KGCELNVYAWTIWIHSLF-SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           K    +   + I    L    G + EA  + ++M++   +P+  +F  L  GL  L
Sbjct: 645 KAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSL 700



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/553 (24%), Positives = 242/553 (43%), Gaps = 81/553 (14%)

Query: 97  HSGVVLRPGLTE----RVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR 152
           +S   L P  T       + R  D+  + + +Y WASKQPN+  S  +++ ++  L K  
Sbjct: 45  NSATRLSPNFTPTQLLHSLRREEDSSAVIHLFY-WASKQPNFKPSSSIFKEVLHKLGKAG 103

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP----------- 201
           +F A+  +++EM K    +I  +  ++ +  +AS  +  + ++ +D M            
Sbjct: 104 EFDAMKDILKEM-KISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHF 162

Query: 202 -------------------------KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
                                      G  PD   F  L+ ALC+   ++ A  L +EM 
Sbjct: 163 YNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEME 222

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA----------------------- 272
           +    P  + FT+++ G+ +EG L  A  V  QM +A                       
Sbjct: 223 DFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIE 282

Query: 273 -------------GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
                        GF PD   +N L++G ++ G +  A E++  M R+G DP+  +Y  L
Sbjct: 283 EALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSL 342

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC++ +++EA +   +M    C  + VTY T+IS  CK  +++   ++   +  +GI
Sbjct: 343 ISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGI 402

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           LP+  TY  ++            +EL  EM+  GC PD   YN++I   C  G+L+EA+N
Sbjct: 403 LPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN 462

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  EME +  +    ++  ++ GF     + EA E F +M  +G+  +    T   L++ 
Sbjct: 463 LLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGV--SRNSVTYNTLIDG 520

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L ++++VE A  +   ++ +G   + + +   +      G +K+A      M      P 
Sbjct: 521 LCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPD 580

Query: 560 PDTFAKLMRGLKK 572
             T+  L+ GL K
Sbjct: 581 IVTYGTLIAGLCK 593



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 159/359 (44%), Gaps = 14/359 (3%)

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN-----LLSGYAQ 290
           +  FKPS   F  +L+   K G+    K +L +MK +     + V +N      +  YA 
Sbjct: 82  QPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKIS-----LSVIDNDSLLVFIESYAS 136

Query: 291 MGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
            G   +  + +  M  + G   N + Y  L+  L    K++    A   M   G   DV 
Sbjct: 137 FGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVS 196

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T+  LI   C++ +I     +++ M   G+LP++ T+  IM    ++  L+  + +  +M
Sbjct: 197 TFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQM 256

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA-ASLSPGTDSFVVMVHGFLGQGC 468
            + GCV      NV++   CK G ++EA+    EM       P   +F ++V+G    G 
Sbjct: 257 VEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGH 316

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           +  A E    M+  G    P   T  +L++ L +  +V+ A  V + ++ + C  N   +
Sbjct: 317 VKHALEVMDMMLREGF--DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTY 374

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
              I +L     V+EA    L +    ++P   T+  L++GL    N  +A E+ ++++
Sbjct: 375 NTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMK 433


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 242/508 (47%), Gaps = 32/508 (6%)

Query: 71  SHDVEKIFRILKKFH-----SRLPKLELALQHSGVVLRPGLT-ERVINRCGDAGNLGYRY 124
           +HD  ++F  +   H     +   K+  AL   G VL  GL   +VI R G + NL + Y
Sbjct: 170 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQR-GMSINL-FTY 227

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRR 183
            +W                 I+ L +  +      L++ MR    P ++T   +  L+R 
Sbjct: 228 NIW-----------------IRGLCEAGRLPEAVRLVDGMRAYAVPDVVT---YNTLIRG 267

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPS 242
                M ++A+  L  M   GC PD+F +  ++D  CK S V+EA +L  D + + F P 
Sbjct: 268 LCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD 327

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + SL+ G C EG +  A  +  + +  G +PDIVVYN+L+ G    G +  A +++ 
Sbjct: 328 QVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMN 387

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM  +GC P+  +Y ++I  LC+M  + +A     +    G   DV T+ TLI G+CK  
Sbjct: 388 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 447

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K+D   ++++ M + GI P+ +TY  ++    K  ++ E  E   EM   GC P+   YN
Sbjct: 448 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 507

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I   C+  +++EA  V  +M    L P   SF  +++GF   G L  A   F+++  +
Sbjct: 508 ILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEK 567

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G  +     T   L+ +      + MA+ ++  +++KG   + Y + + I       +V 
Sbjct: 568 GYSATAD--TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 625

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
            A  + ++M+    +P   TF +++  L
Sbjct: 626 RAYMHLVEMIKKGFIPSMSTFGRVINSL 653



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 172/343 (50%), Gaps = 12/343 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++   V+  L++      ++  A++V++EM + GC PD   +  +++ LCK  ++ +
Sbjct: 360 KPDIV---VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISD 416

Query: 228 AAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +  D + + + P +  F +L+ G+CK  KL  A  ++ +M + G  PD + YN++L+
Sbjct: 417 ATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLN 476

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  + GK+ +  E  +EM  KGC PN  +Y +LI+  CR  KMEEA++  V+M + G   
Sbjct: 477 GLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHP 536

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D V++ TLI GFC++  ++  Y +   + ++G      T+  ++ A   K  +    ++ 
Sbjct: 537 DAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIF 596

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM   G   D   Y V+I  +CK   +  A     EM      P   +F  +++     
Sbjct: 597 DEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVN 656

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
             + +A      MV        + G +  +++++L A K E+A
Sbjct: 657 HRVFQAVGIIHIMV--------KIGVVPEVVDTILNADKKEIA 691



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 185/397 (46%), Gaps = 2/397 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V +A  +L ++ + G   + F +   +  LC+   + EA +L D MR    P +  + +L
Sbjct: 205 VLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTL 264

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK+    EA + L +M + G  PD   YN ++ GY ++  + +A ELLK+   KG 
Sbjct: 265 IRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGF 324

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y  LI  LC    +E A   F E +  G + D+V Y +L+ G C    I    +
Sbjct: 325 VPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQ 384

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +++ M + G  P+  TY  ++    K   + +   +M +    G +PDV  +N +I   C
Sbjct: 385 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYC 444

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K  +L  A+ +   M    ++P T ++  +++G    G + E  E F+EM+ +G    P 
Sbjct: 445 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPN 502

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T   L+ +  R+ K+E A  V   +  +G   +  ++   I+    NG ++ A     
Sbjct: 503 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 562

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            + +       DTF  L+       N  +A +I +++
Sbjct: 563 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEM 599



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 192/447 (42%), Gaps = 8/447 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALI+ L+   +  AV A +   R          ++V  +R +A A  ++ A++  + M
Sbjct: 20  YCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAFERM 79

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
             + C P    +  ++DAL   +   +A K++  M      P L   T  L  +C    L
Sbjct: 80  DLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFC----L 135

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
               ++ +++  A      V Y  ++ G    G   DA +L  +M      PN  ++  +
Sbjct: 136 TARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKV 195

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+   + EA     ++ + G   ++ TY   I G C++ ++     ++D M    +
Sbjct: 196 LHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV 255

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    KK   +E +  +  M   GC+PD   YN +I   CK+  ++EA  
Sbjct: 256 -PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 314

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +       P   ++  +++G   +G +  A E F E   +G+   P      +L+  
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI--KPDIVVYNSLVKG 372

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L     +  A  V + +  +GC  ++  + I I+ L   G++ +A     D +    +P 
Sbjct: 373 LCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPD 432

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             TF  L+ G  K      A ++ E++
Sbjct: 433 VFTFNTLIDGYCKRLKLDSALQLVERM 459


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 216/449 (48%), Gaps = 14/449 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE------KPQLITTEVFVILMRRFASARMVKKAI 194
           Y +++ ++ + R  G+V    EE+ +E       P + T   + IL+R F S   ++K +
Sbjct: 180 YNSVLDAIVRSR--GSVKLSAEEVYREMIRSRVSPNVYT---YNILIRGFCSVGELQKGL 234

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
               EM + GC P+   +  L+DA CK   + EA  L   M  +  +P+L  +  ++ G 
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+EG + EA  +L +M   GF PD V YN LL+GY + G    A  +  EM R G  P+ 
Sbjct: 295 CREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSV 354

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +YT LI ++C+   +  A   F +M   G   +  TYTTLI GF +   ++  Y IL+ 
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 414

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M + G  P+ +TY   +  H   E +EE + ++ EM + G  PDV +Y+ +I   C+ GE
Sbjct: 415 MTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 474

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L  A  +  EM    +SP   ++  ++ G      L EAC+  +EM+  GL   P   T 
Sbjct: 475 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL--PPDEFTY 532

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+N+      +  A  +   ++ KG   +   +++ I+ L      +EA      ++ 
Sbjct: 533 TTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIY 592

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            + +P   T+  L+     +  + + A I
Sbjct: 593 EESVPSDVTYDTLIENCSNIEFKSVVALI 621



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 194/403 (48%), Gaps = 26/403 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    K   F     +  EM +    P ++T   +  L+     AR + +A+E  D
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVT---YTALINSMCKARNLNRAMEFFD 378

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G  P+E  +  L+D   +   + EA ++ +EM E  F PS+  + + ++G C   
Sbjct: 379 QMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 438

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  V+ +M + G  PD+V Y+ ++SG+ + G++  AF++ +EM  KG  P+A +Y+
Sbjct: 439 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 498

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LIQ LC M ++ EA     EM   G   D  TYTTLI+ +C    +++   + D MI +
Sbjct: 499 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 558

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI------------ 425
           G LP+ +TY  ++    K+    E   L+ ++     VP    Y+ +I            
Sbjct: 559 GFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVV 618

Query: 426 ---RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
              +  C  G + EA  V+  M   +  PG   + V++HG    G L +A   +KEM+  
Sbjct: 619 ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 678

Query: 483 GLLSAPQYGTLKALLNSLLR-AQKVEMAKDVWSCIVTKGCELN 524
           G +  P   T+  L+ +L +     EM++ +   +  + C LN
Sbjct: 679 GFV--PHTVTVITLIKALFKEGMNEEMSEVIGDTL--RSCRLN 717



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 166/358 (46%), Gaps = 39/358 (10%)

Query: 270 KDAGFEPDIVVYNNLLSGYAQM-GKM-TDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           K +GF P ++ YN++L    +  G +   A E+ +EM R    PN  +Y +LI+  C + 
Sbjct: 169 KSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVG 228

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           ++++    F EMER+GC  +VVTY TLI  +CK  +ID  + +L SM  +G+ PN ++Y 
Sbjct: 229 ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYN 288

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV------- 440
            I+    ++  ++E  E++ EM   G  PD   YN ++   CK G   +A+ +       
Sbjct: 289 VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN 348

Query: 441 ----------------------------WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
                                       +++M    L P   ++  ++ GF  QG L EA
Sbjct: 349 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 408

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                EM   G   +P   T  A ++     +++E A  V   +V KG   +V +++  I
Sbjct: 409 YRILNEMTESGF--SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTII 466

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
                 G +  A     +M++  V P   T++ L++GL ++     A ++++++  M 
Sbjct: 467 SGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 9/344 (2%)

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE--ANRAFV 337
           V++ ++  Y+ +  +  A   +   +  G  P   SY  ++ A+ R     +  A   + 
Sbjct: 144 VFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYR 203

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM RS    +V TY  LI GFC   ++ +       M + G LPN +TY  ++ A+ K  
Sbjct: 204 EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 263

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
            ++E   L+  M   G  P++ +YNV+I   C+ G +KEA  +  EM     +P   ++ 
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 323

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            +++G+  +G   +A     EMV  G+  +P   T  AL+NS+ +A+ +  A + +  + 
Sbjct: 324 TLLNGYCKEGNFHQALVIHAEMVRNGV--SPSVVTYTALINSMCKARNLNRAMEFFDQMR 381

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
            +G   N   +T  I      G + EA     +M ++   P   T+   + G   L   +
Sbjct: 382 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERME 441

Query: 578 IA-AEITEKVRKMAAERQITFKM----YKRRGERDLKEKAKKQV 616
            A   + E V K  A   +++      + R+GE D   + K+++
Sbjct: 442 EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 485



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 148/370 (40%), Gaps = 64/370 (17%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFV----ILMRRFASARMVKKAI 194
           Y  LI   S+       + ++ EM +    P ++T   F+    +L R       +++A+
Sbjct: 392 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER-------MEEAL 444

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
            V+ EM + G  PD   +  ++   C+   +  A ++  EM E+   P    ++SL+ G 
Sbjct: 445 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+  +L EA  +  +M D G  PD   Y  L++ Y   G +  A  L  EM  KG  P+A
Sbjct: 505 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 564

Query: 314 NSYTVLIQAL-------------------------------------------------- 323
            +Y+VLI  L                                                  
Sbjct: 565 VTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGF 624

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           C    M EA+R F  M     +     Y  +I G C+   + + + +   MI  G +P+ 
Sbjct: 625 CMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHT 684

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +T + ++ A  K+   EE  E++G+  +   + +     V++ +  K G ++  +NV  +
Sbjct: 685 VTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTD 744

Query: 444 MEAASLSPGT 453
           M    L P +
Sbjct: 745 MAKDGLLPNS 754


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 204/430 (47%), Gaps = 7/430 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V  + R+L  F      L  AL+     L PG    V+ RC        R++++A + P 
Sbjct: 65  VGSLCRVLSDFRGPRHDLPAALRGFAPWLTPGDAAAVLRRCRHLPLPSLRFFLFAGELPG 124

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + H  D    L  SL+  R F  + +L+ ++    P  ++  +F +L R ++ AR+ + A
Sbjct: 125 FSHHPDSLLVLANSLAGARLFPLLRSLLSDL---PPSALSRGLFPLLFRAYSRARLPEDA 181

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I     M  +G  P    F  LL AL +N  V+   + F E   +F  S + +T L+ GW
Sbjct: 182 IRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESSAQFDVSAKAYTILISGW 241

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPN 312
               K   A+ +  +M + G E D+ VYN L+    + G +T A E L  M++  G  PN
Sbjct: 242 AVVKKPENARSLFDEMVERGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPN 301

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +Y   + A C  + +  A R    M       +V TY  +I   C   +I+  Y ILD
Sbjct: 302 AATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILD 361

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            +  +G  P+  +Y  ++ AH K +E+ + + L+  M K  C PD  +YN+++++   +G
Sbjct: 362 EITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLIGVG 421

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG-QGCLIEACEYFKEMVGRGLLSAPQYG 491
               A+ VW+ ME     PG  ++ VM+HG    +G   +AC YF  MV  G+   P   
Sbjct: 422 RFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGI--PPYQA 479

Query: 492 TLKALLNSLL 501
           T + L + LL
Sbjct: 480 TCEVLRDRLL 489



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 171/400 (42%), Gaps = 24/400 (6%)

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---RFKPSL--RHFTSLLYGW 253
           E+P +   PD  +   L ++L         A+LF  +R       PS   R    LL+  
Sbjct: 121 ELPGFSHHPDSLL--VLANSLA-------GARLFPLLRSLLSDLPPSALSRGLFPLLFRA 171

Query: 254 CKEGKLVE-AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
               +L E A      M   GF P I  +++LL   ++ G +       +E   +  D +
Sbjct: 172 YSRARLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESSAQ-FDVS 230

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +YT+LI     ++K E A   F EM   G E DV  Y  LI   C+   I    E L 
Sbjct: 231 AKAYTILISGWAVVKKPENARSLFDEMVERGVELDVHVYNALIDALCRGGDITSAQEQLS 290

Query: 373 SMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           +M +  G++PN  TY   + A    +++   + ++  M      P+V  YN VIRL C L
Sbjct: 291 NMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDL 350

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR--GLLSAPQ 489
           GE+ EA N+ +E+      P   S+    +  L   C ++       ++ R    L  P 
Sbjct: 351 GEINEAYNILDEITTQGEKPDVWSY----NTLLNAHCKLKEVNKALRLISRMDKELCPPD 406

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHVKEACSYC 548
             +   LL  L+   + + A +VW  +  +G       + + IH L S  G  ++ACSY 
Sbjct: 407 RHSYNMLLKMLIGVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYF 466

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           + M+D  + P   T   L   L  L  R     +T+++R+
Sbjct: 467 VRMVDEGIPPYQATCEVLRDRLLMLGLRDQLGVLTDRMRR 506


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 236/503 (46%), Gaps = 56/503 (11%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVK 191
           Y H+   Y  L+  L++  +     A+ +EM  +  +P   T   F IL+R    +  ++
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFT---FAILLRGLCRSNQLE 59

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLL----------------------------------- 216
           KA ++L  M + GC PD+ ++  L+                                   
Sbjct: 60  KARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIV 119

Query: 217 DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           D LCK    ++A KL DEMR++   P++  +  ++ G C+E KL EAK +L +M   G+ 
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD+V YN+ + G  +  ++ +A + L  M      P+  SYT +I  LC+   ++ A+R 
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFLARMPVT---PDVVSYTTVINGLCKSGDLDSASRM 236

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
              M   GC  DVVTY++LI GFCK  +++R   +LDSM++ G  PN + Y  ++ A  +
Sbjct: 237 LDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHR 296

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              + +  +++ EM + G  PDV +YN  I   CK   +K+A  V++ M     +P   S
Sbjct: 297 LGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASS 356

Query: 456 F----------VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
           +           V++ G    G   EAC  F +++   +   P       +L+S  + ++
Sbjct: 357 YSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICE-PDVFFYNVMLDSHCKRRQ 415

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++ A  +   ++ K C  NV  W I +H L  +  + +A +  L M+D   +P   T+  
Sbjct: 416 IDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGT 474

Query: 566 LMRGLKKLYNRQIAAEITEKVRK 588
           L+  + K      A E+ E+  K
Sbjct: 475 LVDAMCKCGKSAAALELFEEAVK 497



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 223/491 (45%), Gaps = 53/491 (10%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y ALI   SK + FG  +  + EM K    P ++T   +  ++     A   + A+++L
Sbjct: 79  IYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVT---YTNIVDGLCKAERTRDAVKLL 135

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER------------------- 238
           DEM   GC P+ + +  +++ LC+   + EA K+ +EM  R                   
Sbjct: 136 DEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKC 195

Query: 239 --------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
                           P +  +T+++ G CK G L  A  +L  M + G  PD+V Y++L
Sbjct: 196 DRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSL 255

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G+ + G++  A  LL  M + GC PN  +Y  L+ AL R+  + +A    VEMER G 
Sbjct: 256 IDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGF 315

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY----LHIMLAHEKKEEL- 399
             DVV+Y   I G CK+ ++ +   + D M++RG  PN  +Y    + I+L     + L 
Sbjct: 316 TPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLC 375

Query: 400 ------EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
                 E C      + +  C PDV  YNV++   CK  ++ +A+ +  +M   +     
Sbjct: 376 KGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NV 434

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++ ++VHG      L +A      MV  G +  P + T   L++++ +  K   A +++
Sbjct: 435 VTWNILVHGLCVDDRLSDAETMLLTMVDEGFI--PDFVTYGTLVDAMCKCGKSAAALELF 492

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
              V  GC  +V  ++  I  L      +EA      +++   +P   T   L R L KL
Sbjct: 493 EEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHRKL-KL 551

Query: 574 YNRQIAAEITE 584
            N+   AE+ +
Sbjct: 552 LNKPRKAEVVD 562



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 186/406 (45%), Gaps = 52/406 (12%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
           G E + F +  LL  L +     +A+ +F EM ++  +P    F  LL G C+  +L +A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           + +L +MK+ G  PD  +YN L+SGY++      AF+ L EM +  C P   +YT ++  
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+ E+  +A +   EM   GC  ++ TY  ++ G C+ RK+D   ++L+ M  RG  P+
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY   +    K + ++E  + +  M      PDV +Y  VI   CK G+L  A  + +
Sbjct: 182 VVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLD 238

Query: 443 EMEAASLSPGTDSFVVMVHGF----------------LGQGC------------------ 468
            M     +P   ++  ++ GF                L  GC                  
Sbjct: 239 HMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLG 298

Query: 469 -LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN--- 524
            + +A +   EM  RG    P   +  A ++ L +A++V+ AK V+  +V +GC  N   
Sbjct: 299 HIGKAEDMLVEMERRGF--TPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASS 356

Query: 525 -------VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
                  +  +T+ +  L   G   EAC+    ++D  +  +PD F
Sbjct: 357 YSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKIC-EPDVF 401



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 147/332 (44%), Gaps = 34/332 (10%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G+E ++  YN LL    +  +   A  + +EM  K C P+A ++ +L++ LCR  ++E+A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            +    M+  GC  D   Y  LISG+ K++   + ++ L  M++   LP  +TY +I+  
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA------ 446
             K E   + V+L+ EMR  GC P++  YNV++   C+  +L EA  +  EM        
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 447 --------------------------ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
                                       ++P   S+  +++G    G L  A      M 
Sbjct: 182 VVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            RG    P   T  +L++   +  +VE A  +   ++  GC  N+ A+   + +L   GH
Sbjct: 242 NRG--CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGH 299

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + +A    ++M      P   ++   + GL K
Sbjct: 300 IGKAEDMLVEMERRGFTPDVVSYNACIDGLCK 331



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 24/291 (8%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           +PN V     Y +L+ +L ++   G    ++ EM  R   P +++   +   +     A 
Sbjct: 281 RPNMV----AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVS---YNACIDGLCKAE 333

Query: 189 MVKKAIEVLDEMPKYGCEP----------DEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
            VKKA  V D M + GC P          D  ++  LLD LCK     EA  LF ++ + 
Sbjct: 334 RVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDE 393

Query: 239 --FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
              +P +  +  +L   CK  ++ +A  +  QM +     ++V +N L+ G     +++D
Sbjct: 394 KICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSD 452

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A  +L  M  +G  P+  +Y  L+ A+C+  K   A   F E  + GC  DVVTY+ LI+
Sbjct: 453 AETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALIT 512

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQ--LTYLHIMLAHEKKEELEECVEL 405
           G       +  Y +   +++R  +P+   L  LH  L    K    E V+L
Sbjct: 513 GLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKAEVVDL 563


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 222/473 (46%), Gaps = 14/473 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           AS  P  V +Y+    L+    +  +  A   L+  M    P       +  ++R     
Sbjct: 102 ASGAPVDVFAYN---TLVAGYCRYGRLDAARRLIASM----PVPPDAYTYTPIIRGLCDR 154

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             V  A+ +LD+M + GC+P    +  LL+A+CK+S   EA  + DEMR +   P++  +
Sbjct: 155 GRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTY 214

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             ++ G C+EG++ +AK +L ++   GF+PDIV Y  +L G     +  D   L  EM  
Sbjct: 215 NVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVD 274

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K C PN  ++ +L++  CR   +E A +   +M + GC  +      +I+  CK  ++D 
Sbjct: 275 KKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDD 334

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            Y+ L++M   G  P+ ++Y  ++    +    E   EL+ EM +  C P+   +N  I 
Sbjct: 335 AYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFIC 394

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + C+ G +++A+ +   M     S G  ++  +VHGF  QG +  A E F       L  
Sbjct: 395 ILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN-----LPC 449

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   T   LL  L  A++++ A ++ + ++ K C LN   + + +      G V+EA  
Sbjct: 450 EPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAME 509

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFK 598
               MM+    P   TF  L+ G+ K  N + A E+    V K  +   IT+ 
Sbjct: 510 LVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYS 562



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 205/417 (49%), Gaps = 15/417 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     Y  ++K L   R++  V  L  EM  +K  P  +T   F +L+R F    
Sbjct: 243 QPDIVS----YTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT---FDMLVRFFCRGG 295

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
           MV++AI+VL +M ++GC P+  +   +++A+CK   V +A    + M      P    +T
Sbjct: 296 MVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYT 355

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           ++L G C+ G+   AK +L +M      P+ V +N  +    Q G +  A +L++ M   
Sbjct: 356 TVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEY 415

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC     +Y  L+   C   +++ A   F  +    CE + +TYTTL++G C + ++D  
Sbjct: 416 GCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAA 472

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+L  MIQ+    N +T+  ++    +K  +EE +EL+ +M + GC P++  +N ++  
Sbjct: 473 AELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDG 532

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             K    +EA+ + + + +  +S  T ++  +V     +    EA +    +   G+   
Sbjct: 533 ITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGM--R 590

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           P+ G    +L +L +  + + A D ++ +V+ GC  N   + I I  L   G +KEA
Sbjct: 591 PKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 647



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 176/365 (48%), Gaps = 6/365 (1%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +RR  +   + +A  +++     G  PD ++   L+  LC+     +AA++         
Sbjct: 46  LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGA 105

Query: 241 P-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           P  +  + +L+ G+C+ G+L  A+ ++  M      PD   Y  ++ G    G++ DA  
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALA 162

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           LL +M ++GC P+  +YTVL++A+C+     EA     EM   GC  ++VTY  +I+G C
Sbjct: 163 LLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMC 222

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           +  ++D   EIL+ +   G  P+ ++Y  ++         ++   L  EM    CVP+  
Sbjct: 223 REGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEV 282

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +++++R  C+ G ++ A+ V  +M     +P T    ++++    QG + +A ++   M
Sbjct: 283 TFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM 342

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G    P   +   +L  L RA + E AK++   +V K C  N   +  +I  L   G
Sbjct: 343 GMYG--CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKG 400

Query: 540 HVKEA 544
            +++A
Sbjct: 401 LIEQA 405



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 149/343 (43%), Gaps = 6/343 (1%)

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  ++      G  PD+ +   L+    + G+ +DA  +L+     G   +  +Y  
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNT 114

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+   CR  +++ A R    M       D  TYT +I G C   ++     +LD M+QRG
Sbjct: 115 LVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG 171

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +TY  ++ A  K     E + ++ EMR  GC P++  YNV+I   C+ G + +A 
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + N + +    P   S+  ++ G        +    F EMV +  +  P   T   L+ 
Sbjct: 232 EILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV--PNEVTFDMLVR 289

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R   VE A  V   +   GC  N     I I+++   G V +A  +  +M      P
Sbjct: 290 FFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNP 349

Query: 559 QPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKMY 600
              ++  ++RGL +    + A E + E VRK     ++TF  +
Sbjct: 350 DTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTF 392



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 110/256 (42%), Gaps = 7/256 (2%)

Query: 132 PNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           P Y  S  +  Y AL+       +  +   L   +  E P  IT   +  L+     A  
Sbjct: 413 PEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE-PNTIT---YTTLLTGLCHAER 468

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +  A E+L  M +  C  +   F  L+   C+   V+EA +L ++M E    P+L  F +
Sbjct: 469 LDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 528

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL G  K+    EA  +L  +   G   D + Y++++   ++  +  +A ++L  ++  G
Sbjct: 529 LLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMG 588

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P    Y  ++ ALC+  + ++A   F  M  +GC  +  TY  LI G      +    
Sbjct: 589 MRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAR 648

Query: 369 EILDSMIQRGILPNQL 384
            +L  +  +G+L   L
Sbjct: 649 YVLSELYAKGVLSKSL 664


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 236/469 (50%), Gaps = 11/469 (2%)

Query: 137 SYDVY--RALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKK 192
           +++VY    LI  L ++       ++M +M K   +P  IT   F  L+    +   +K+
Sbjct: 128 THNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAIT---FNTLINGLCNEGKIKE 184

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           A+ + +EM   G EP+   +  +++ LCKN +   A ++F +M + R KP++  + +++ 
Sbjct: 185 AVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIID 244

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
             CK+  + EA   L +M D G  PD+V YN +L G+  +G++ +A  L KEM  +   P
Sbjct: 245 SLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMP 304

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  ++ +L+  LC+   + EA      M   G E +  TY  L+ G+C   ++D   ++L
Sbjct: 305 DTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVL 364

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             MI +G  PN  +Y  ++  + K + + E   L+ EM +    PD   Y+ +++  C++
Sbjct: 365 GIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQV 424

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G  +EA+N++ EM ++ L P   ++ +++ GF   G L EA +  KEM  R +   P   
Sbjct: 425 GRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI--KPNII 482

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               L+  +  A K+E+AK+++S +   G   +++ + + I  L   G   EA  +   M
Sbjct: 483 LYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKM 542

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKM 599
            D   +P   ++  +++G  +  +   A + I E V K  +    TF+M
Sbjct: 543 EDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQM 591



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 222/474 (46%), Gaps = 26/474 (5%)

Query: 59  NTTDTHG-SHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT------ERVI 111
           N  D  G +HN +S        +L     RL  ++ A+   G + + G+         +I
Sbjct: 120 NQMDLFGVTHNVYS------LNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLI 173

Query: 112 NRCGDAGNLG-----YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK 166
           N   + G +      +   +W+  +PN +    V   L K+ + +     V+  ME+ R 
Sbjct: 174 NGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAV-RVFRKMEQNRG 232

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
            KP ++T   +  ++      R+V +A+E L EM   G  PD   +  +L   C    + 
Sbjct: 233 -KPNVVT---YNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLN 288

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           EA +LF EM  R   P    F  L+ G CKEG + EA+ V   M + G EP+   YN L+
Sbjct: 289 EATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALM 348

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            GY    +M +A ++L  M  KGC PN +SY +LI   C+ ++M EA R   EM      
Sbjct: 349 DGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLT 408

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            D VTY+TL+ G C+  +      +   M   G+LP+ + Y  ++    K   L+E ++L
Sbjct: 409 PDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKL 468

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + EM +    P++  Y ++IR     G+L+ A  +++++ A  + P   ++ VM+ G L 
Sbjct: 469 LKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLK 528

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           +G   EA E+F++M   G L  P   +   ++   L+ Q    A  +   +V K
Sbjct: 529 EGLSDEAYEFFRKMEDDGFL--PDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGK 580



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 3/348 (0%)

Query: 224 SVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           S+ +A   F  M R   +PS+  F   L    K+ +   A  +  QM   G   ++   N
Sbjct: 76  SIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLN 135

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++   ++  +  A  ++ +M + G  P+A ++  LI  LC   K++EA   F EM  S
Sbjct: 136 VLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G E +V++Y T+I+G CK+        +   M Q    PN +TY  I+ +  K   + E 
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEA 255

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           VE + EM   G  PDV  YN ++   C LG+L EA  ++ EM   ++ P T +F ++V G
Sbjct: 256 VEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDG 315

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +G + EA    + M  +G  + P   T  AL++      +++ A  V   ++ KGC 
Sbjct: 316 LCKEGMVSEARCVSETMTEKG--AEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCA 373

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            N+ ++ I I+    +  + EA     +M + ++ P   T++ LM+GL
Sbjct: 374 PNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGL 421



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 1/249 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           LM  +     + +AI+VL  M   GC P+   +  L++  CK+  + EA +L  EM E+ 
Sbjct: 347 LMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKN 406

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P    +++L+ G C+ G+  EA  +  +M  +G  PD++ Y+ LL G+ + G + +A 
Sbjct: 407 LTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEAL 466

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +LLKEM  +   PN   YT+LI+ +    K+E A   F ++   G   D+ TY  +I G 
Sbjct: 467 KLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGL 526

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            K    D  YE    M   G LP+  +Y  I+    + ++    ++L+ EM       D 
Sbjct: 527 LKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADS 586

Query: 419 SNYNVVIRL 427
           S + +++ L
Sbjct: 587 STFQMLLDL 595


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 226/429 (52%), Gaps = 11/429 (2%)

Query: 148 LSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
           ++ M   G +   M+ +R     P ++T   +  L+  FA A+ +++A+++L+EM + GC
Sbjct: 32  ITAMANAGDLDGAMDHLRSMGCDPNVVT---YTALIAAFARAKKLEEAMKLLEEMRERGC 88

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKY 264
            P+   +  L+DALCK S V  A  +  +M E  F P++  F SL+ G+CK G + +A+ 
Sbjct: 89  PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARK 148

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +L  M   G  P++V Y+ L+ G  +  K  +A E+L+EM+  G  P+A +Y+ LI  LC
Sbjct: 149 LLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLC 208

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           + +K+EEA +    M  SGC  DVV Y+++I  FCKS K+    + L  M ++   P+ +
Sbjct: 209 KADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV 268

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNE 443
           TY  ++    K  ++ E   ++ +M++ G V PDV  Y+ VI   CK   L EA  + + 
Sbjct: 269 TYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 328

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M  A  +P   ++  ++ G    G L EA EY  + + R    AP   T   L++ L +A
Sbjct: 329 MCKAGCNPDVVTYTTIIDGLCKCGRLEEA-EYLLQGMKRA-GCAPNVVTYTTLISGLCKA 386

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD--ADVMPQPD 561
           +KV+ A+ V   +   GC  N+  +   ++ L  +G +KEA      M D  A+  P   
Sbjct: 387 RKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAA 446

Query: 562 TFAKLMRGL 570
           T+  ++  L
Sbjct: 447 TYRTIVNAL 455



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 216/442 (48%), Gaps = 42/442 (9%)

Query: 110 VINRCGDAGNL--GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
           +I    +AG+L     +       PN V     Y ALI + ++ +K      L+EEMR+ 
Sbjct: 31  IITAMANAGDLDGAMDHLRSMGCDPNVV----TYTALIAAFARAKKLEEAMKLLEEMRER 86

Query: 168 --KPQLITTEVFVILMRRF----ASARMVKKAIE-------------------------- 195
              P L+T  V V  + +     A+  +VKK IE                          
Sbjct: 87  GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDA 146

Query: 196 --VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
             +L  M   G  P+   +  L+D LCK+    EA ++ +EM+     P    +++L++G
Sbjct: 147 RKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHG 206

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CK  K+ EA+ +L +M  +G  PD+VVY++++  + + GK+ +A + L+EMR++   P+
Sbjct: 207 LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 266

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEIL 371
             +Y  +I  LC++ K+ EA     +M+ SG    DVVTY+T+I+G CKS  +    ++L
Sbjct: 267 VVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 326

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D M + G  P+ +TY  I+    K   LEE   L+  M++ GC P+V  Y  +I   CK 
Sbjct: 327 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 386

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            ++ EA  V  EM  A   P   ++  MV+G    G + EA +  + M       +P   
Sbjct: 387 RKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAA 446

Query: 492 TLKALLNSLLRAQKVEMAKDVW 513
           T + ++N+L+ +  V+ A+ + 
Sbjct: 447 TYRTIVNALMSSDLVQEAEQLL 468



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 196/412 (47%), Gaps = 36/412 (8%)

Query: 193 AIEVLDEMPKYGCEPDEFV-----------------------FGC---------LLDALC 220
           A+E+L+EM   G  PD F                         GC         L+ A  
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFA 68

Query: 221 KNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           +   ++EA KL +EMRER   P+L  +  L+   CK   +  A+ V+ +M + GF P+++
Sbjct: 69  RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVM 128

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            +N+L+ G+ + G + DA +LL  M  KG  PN  +Y+ LI  LC+ +K  EA     EM
Sbjct: 129 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 188

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           + SG   D  TY+ LI G CK+ KI+   ++L  M   G  P+ + Y  I+ A  K  +L
Sbjct: 189 KASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 248

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVV 458
            E  + + EMRK    PDV  YN VI   CKLG++ EA  + ++M E+  + P   ++  
Sbjct: 249 LEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYST 308

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           +++G      L+EA +    M   G    P   T   +++ L +  ++E A+ +   +  
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAG--CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 366

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            GC  NV  +T  I  L     V EA     +M +A   P   T+  ++ GL
Sbjct: 367 AGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGL 418



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   +  L+     ++   +A EVL+EM   G  PD F +  L+  LCK   ++E
Sbjct: 159 RPNVVT---YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEE 215

Query: 228 AAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A ++   M      P +  ++S+++ +CK GKL+EA+  L +M+     PD+V YN ++ 
Sbjct: 216 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 275

Query: 287 GYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           G  ++GK+ +A  +L +M+  G   P+  +Y+ +I  LC+ + + EA +    M ++GC 
Sbjct: 276 GLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN 335

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            DVVTYTT+I G CK  +++    +L  M + G  PN +TY  ++    K  +++E   +
Sbjct: 336 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 395

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA--ASLSPGTDSFVVMVHGF 463
           M EMR  GC P++  YN ++   C  G +KEA  +   M+   A  SP   ++  +V+  
Sbjct: 396 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNAL 455

Query: 464 LGQGCLIEACEYFKEM 479
           +    + EA +  ++M
Sbjct: 456 MSSDLVQEAEQLLEQM 471



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 183/405 (45%), Gaps = 42/405 (10%)

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C    +  A +L +EM+   F P     T ++      G L  A   +  ++  G +P++
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNV 57

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V Y  L++ +A+  K+ +A +LL+EMR +GC PN  +Y VL+ ALC++  +  A     +
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M   G   +V+T+ +L+ GFCK   +D   ++L  M+ +G+ PN +TY  ++    K ++
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
             E  E++ EM+  G  PD   Y+ +I   CK  +++EA  +   M  +  +P    +  
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSS 237

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK-------- 510
           ++H F   G L+EA +  +EM  R    +P   T   +++ L +  K+  A+        
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEM--RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQE 295

Query: 511 --DVWSCIVT--------------------------KGCELNVYAWTIWIHSLFSNGHVK 542
             DV   +VT                           GC  +V  +T  I  L   G ++
Sbjct: 296 SGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLE 355

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           EA      M  A   P   T+  L+ GL K      A  + E++R
Sbjct: 356 EAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 400



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 156/320 (48%), Gaps = 48/320 (15%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASAR 188
           +PN V     Y ALI  L K +KF     ++EEM+      +T + F    L+     A 
Sbjct: 159 RPNVV----TYSALIDGLCKSQKFLEAKEVLEEMKASG---VTPDAFTYSALIHGLCKAD 211

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFT 247
            +++A ++L  M   GC PD  V+  ++ A CK+  + EA K   EMR +R  P +  + 
Sbjct: 212 KIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYN 271

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKD------------------------------------ 271
           +++ G CK GK+ EA+ +L QM++                                    
Sbjct: 272 TVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCK 331

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
           AG  PD+V Y  ++ G  + G++ +A  LL+ M+R GC PN  +YT LI  LC+  K++E
Sbjct: 332 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDE 391

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI--QRGILPNQLTYLHI 389
           A R   EM  +GC  ++VTY T+++G C S +I    +++  M   +    P+  TY  I
Sbjct: 392 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 451

Query: 390 MLAHEKKEELEECVELMGEM 409
           + A    + ++E  +L+ +M
Sbjct: 452 VNALMSSDLVQEAEQLLEQM 471



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILM 181
           Y +   K+     +   Y  LI  L K RK      +MEEMR     P L+T   +  ++
Sbjct: 359 YLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT---YNTMV 415

Query: 182 RRFASARMVKKAIEVLDEMP--KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
                +  +K+A +++  M   +  C PD   +  +++AL  +  V+EA +L ++M
Sbjct: 416 NGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 196/354 (55%), Gaps = 2/354 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           +V ++ R++ +  +    +E  L    V L   L   V+ R   A    +R++ WA ++ 
Sbjct: 159 EVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKA 218

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            + H+   Y A++  L + R+F ++  ++ EM ++   L+T E F I ++ FA+A+  KK
Sbjct: 219 GFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKG--LLTMETFSIAIKAFAAAKERKK 276

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A+ V + M +Y  +       CLLD L +    KEA  LF+++ +RF P+LR +T LL G
Sbjct: 277 AVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNG 336

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           WC+   LVEA     +M D GF+PDI+ ++ +L G  +  K +DA +L + M+ KG  PN
Sbjct: 337 WCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPN 396

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT+LI+ LC+  KM+EA   F EM  SGC+ D   YT LI+GF   +K+D+ Y +L 
Sbjct: 397 VRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLK 456

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            M ++G   +  TY  ++     ++  ++ V +  +M + G    +  YN++++
Sbjct: 457 EMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMK 510



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 106/231 (45%), Gaps = 4/231 (1%)

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +++G   +  TY  ++S   ++R+ +    +L  M ++G+L  + T+   + A    +E 
Sbjct: 216 QKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTME-TFSIAIKAFAAAKER 274

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           ++ V +   M++      V   N ++    +    KEA  ++ ++E    +P   ++ V+
Sbjct: 275 KKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLED-RFTPNLRTYTVL 333

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           ++G+     L+EA   + EM+ +G    P       +L  LL+ +K   A  ++  +  K
Sbjct: 334 LNGWCRIKNLVEAGRTWNEMIDKGF--KPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAK 391

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           G   NV  +TI I  L     ++EA  Y  +M+D+   P    +  L+ G 
Sbjct: 392 GPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGF 442



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 6/210 (2%)

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   N  TY  +M    +  + E  + ++GEM + G +  +  +++ I+      E K+A
Sbjct: 219 GFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLL-TMETFSIAIKAFAAAKERKKA 277

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL-IEACEYFKEMVGRGLLSAPQYGTLKAL 496
           V V+  M+  +   G D+   ++   LG+  L  EA   F+++  R     P   T   L
Sbjct: 278 VGVFELMKRYNFDAGVDTINCLLDN-LGRAKLGKEAQALFEKLEDR---FTPNLRTYTVL 333

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           LN   R + +  A   W+ ++ KG + ++ A    +  L       +A      M     
Sbjct: 334 LNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGP 393

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            P   T+  L+R L K    Q A E  +++
Sbjct: 394 SPNVRTYTILIRDLCKQMKMQEAVEYFDEM 423


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 195/377 (51%), Gaps = 3/377 (0%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P    T  +  L+R          A+ VLD+M + GC PD   +  LL+A CK S  K+A
Sbjct: 147 PMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQA 206

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            KL DEMR++   P +  +  ++ G C+EG++ +A   L  +   G EP+ V YN +L G
Sbjct: 207 VKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKG 266

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
                +  DA +L+ EM RKG  PN  ++ +LI  LCR   +E A     ++ + GC  +
Sbjct: 267 LCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPN 326

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
            ++Y  ++  FCK +K+DR    ++ M+  G  P+ ++Y  ++ A  +  E++  VEL+ 
Sbjct: 327 SLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLH 386

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +++  GC P + +YN VI    K G+ +EA+ + NEM    L P   ++  +  G   +G
Sbjct: 387 QLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREG 446

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            + EA + F ++   G+   P      A+L  L + +    A D+++ +V+ GC  N   
Sbjct: 447 RIEEAIKAFCKVQDMGI--RPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNEST 504

Query: 528 WTIWIHSLFSNGHVKEA 544
           +TI I  L   G VKEA
Sbjct: 505 YTILIEGLAYEGLVKEA 521



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 178/366 (48%), Gaps = 3/366 (0%)

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKY 264
           EPD + +  L+  LC       A  + D+M R    P +  +T LL   CK     +A  
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +L +M+D G  PDIV YN +++G  Q G++ DA E LK +   GC+PN  SY ++++ LC
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLC 268

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
             E+ E+A +   EM R G   +VVT+  LIS  C+   ++   EILD + + G  PN L
Sbjct: 269 TAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           +Y  I+ A  K+++++  +  +  M   GC PD+ +YN ++   C+ GE+  AV + +++
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           +    +P   S+  ++ G    G   EA E   EMV +GL   P   T   + + L R  
Sbjct: 389 KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGL--QPDIITYSTISSGLCREG 446

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           ++E A   +  +   G   N   +   +  L        A      M+    MP   T+ 
Sbjct: 447 RIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYT 506

Query: 565 KLMRGL 570
            L+ GL
Sbjct: 507 ILIEGL 512



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 173/349 (49%), Gaps = 6/349 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++  K   +     L++EMR +   P ++T  V V           V  A+E L 
Sbjct: 190 YTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV---NGICQEGRVDDAMEFLK 246

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            +P YGCEP+   +  +L  LC     ++A KL  EM R+   P++  F  L+   C+ G
Sbjct: 247 SLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRG 306

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +L Q+   G  P+ + YN +L  + +  KM  A   ++ M   GC P+  SY 
Sbjct: 307 LVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYN 366

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALCR  +++ A     +++  GC   +++Y T+I G  K+ K +   E+L+ M+ +
Sbjct: 367 TLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTK 426

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  I     ++  +EE ++   +++ +G  P+   YN ++   CK      A
Sbjct: 427 GLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSA 486

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           ++++  M +    P   ++ +++ G   +G + EA E   E+  RG++S
Sbjct: 487 IDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVVS 535



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 146/287 (50%), Gaps = 8/287 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  ++K L    ++     LM EM RK +P  + T  F +L+       +
Sbjct: 254 EPNTVS----YNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVT--FNMLISFLCRRGL 307

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           V+ A+E+LD++PKYGC P+   +  +L A CK   +  A    + M      P +  + +
Sbjct: 308 VEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNT 367

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL   C+ G++  A  +L Q+KD G  P ++ YN ++ G  + GK  +A ELL EM  KG
Sbjct: 368 LLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKG 427

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y+ +   LCR  ++EEA +AF +++  G   + V Y  ++ G CK R      
Sbjct: 428 LQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAI 487

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           ++   M+  G +PN+ TY  ++     +  ++E  E+M E+   G V
Sbjct: 488 DLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVV 534



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 179/387 (46%), Gaps = 39/387 (10%)

Query: 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           L  L +   ++EA +L + M      +     +L+   C  G+  EA+ VL     A  E
Sbjct: 63  LRVLVRRGDLEEAIRLVESMAGLEPSAAGPCAALIKKLCASGRTAEARRVL-----ASCE 117

Query: 276 PDIVVYNNLLSGYAQMGKM-------------------------------TD-AFELLKE 303
           PD++ YN +++GY   G++                               TD A  +L +
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDD 177

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M R+GC P+  +YT+L++A C+    ++A +   EM   GC  D+VTY  +++G C+  +
Sbjct: 178 MLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGR 237

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D   E L S+   G  PN ++Y  ++      E  E+  +LM EM + G  P+V  +N+
Sbjct: 238 VDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNM 297

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   C+ G ++ A+ + +++     +P + S+  ++H F  Q  +  A  + + MV  G
Sbjct: 298 LISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSG 357

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   +   LL +L R  +V+ A ++   +  KGC   + ++   I  L   G  +E
Sbjct: 358 CY--PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEE 415

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL 570
           A     +M+   + P   T++ +  GL
Sbjct: 416 ALELLNEMVTKGLQPDIITYSTISSGL 442



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 13/334 (3%)

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIV-VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           + G L EA  ++  M  AG EP        L+      G+  +A  +L       C+P+ 
Sbjct: 68  RRGDLEEAIRLVESM--AGLEPSAAGPCAALIKKLCASGRTAEARRVLAS-----CEPDV 120

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            SY  ++   C   +++ A R    M     E D  TY TLI G C   + D    +LD 
Sbjct: 121 MSYNAMVAGYCVTGQLDNARRLVAAMPM---EPDTYTYNTLIRGLCGRGRTDNALAVLDD 177

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M++RG +P+ +TY  ++ A  K+   ++ V+L+ EMR  GC PD+  YNVV+   C+ G 
Sbjct: 178 MLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGR 237

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           + +A+     + +    P T S+ +++ G        +A +   EM  +G    P   T 
Sbjct: 238 VDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKG--RPPNVVTF 295

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++ L R   VE A ++   I   GC  N  ++   +H+      +  A ++   M+ 
Sbjct: 296 NMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVS 355

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +   P   ++  L+  L +      A E+  +++
Sbjct: 356 SGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 389



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 132/308 (42%), Gaps = 48/308 (15%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA-NSYTVLIQALCRMEKMEEANRAFVEME 340
           N+ L    + G + +A  L++ M   G +P+A      LI+ LC   +  EA R      
Sbjct: 60  NDRLRVLVRRGDLEEAIRLVESM--AGLEPSAAGPCAALIKKLCASGRTAEARRVL---- 113

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            + CE DV++Y  +++G+C + ++D    ++ +M      P+  TY  ++     +   +
Sbjct: 114 -ASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRGLCGRGRTD 169

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             + ++ +M + GCVPDV  Y +++   CK    K+AV + +EM     +P   ++ V+V
Sbjct: 170 NALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV 229

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           +G   +G + +A E+ K        S P YG                             
Sbjct: 230 NGICQEGRVDDAMEFLK--------SLPSYG----------------------------- 252

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           CE N  ++ I +  L +    ++A     +M      P   TF  L+  L +    + A 
Sbjct: 253 CEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAM 312

Query: 581 EITEKVRK 588
           EI +++ K
Sbjct: 313 EILDQIPK 320


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 192/366 (52%), Gaps = 3/366 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+R          A+ VLDEM +  C PD   +  LL+A CK S  K+A KL DEMR++ 
Sbjct: 166 LIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 225

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +  +  ++ G C+EG++ +A   L  +   G EP+ V YN +L G     +  DA 
Sbjct: 226 CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 285

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL+ EM +KGC PN  ++ +LI  LCR   +E A     ++ + GC  + ++Y  L+  F
Sbjct: 286 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAF 345

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK +K+D+    LD M+ RG  P+ ++Y  ++ A  +  E++  VEL+ +++  GC P +
Sbjct: 346 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVL 405

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
            +YN VI    K G+ KEA+ + NEM +  L P   ++  +  G   +  + +A   F +
Sbjct: 406 ISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGK 465

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           +   G+   P      A++  L + ++   A D+++ ++  GC  N   +TI I  L   
Sbjct: 466 VQDMGI--RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 523

Query: 539 GHVKEA 544
           G +KEA
Sbjct: 524 GLIKEA 529



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 177/366 (48%), Gaps = 3/366 (0%)

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKY 264
           E D +    L+  LC       A  + DEM R R  P +  +T LL   CK     +A  
Sbjct: 157 ERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 216

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +L +M+D G  PDIV YN +++G  Q G++ DA E LK +   GC+PN  SY ++++ LC
Sbjct: 217 LLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLC 276

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
             E+ E+A     EM + GC  +VVT+  LIS  C+   ++   E+L+ + + G  PN L
Sbjct: 277 TAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSL 336

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           +Y  ++ A  K++++++ +  +  M   GC PD+ +YN ++   C+ GE+  AV + +++
Sbjct: 337 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 396

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           +    +P   S+  ++ G    G   EA E   EMV +GL   P   T   +   L R  
Sbjct: 397 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL--QPDIITYSTIAAGLCRED 454

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           ++E A   +  +   G   N   +   I  L        A      M+    MP   T+ 
Sbjct: 455 RIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 514

Query: 565 KLMRGL 570
            L+ GL
Sbjct: 515 ILIEGL 520



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 171/346 (49%), Gaps = 6/346 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++  K   +     L++EMR +   P ++T  V V           V  AIE L 
Sbjct: 198 YTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV---NGICQEGRVDDAIEFLK 254

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +P YGCEP+   +  +L  LC     ++A +L  EM ++   P++  F  L+   C++G
Sbjct: 255 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 314

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  VL Q+   G  P+ + YN LL  + +  KM  A   L  M  +GC P+  SY 
Sbjct: 315 LVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 374

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALCR  +++ A     +++  GC   +++Y T+I G  K+ K     E+L+ M+ +
Sbjct: 375 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 434

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  I     +++ +E+ +   G+++ +G  P+   YN +I   CK  E   A
Sbjct: 435 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 494

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++++  M      P   ++ +++ G   +G + EA +   E+  RG
Sbjct: 495 IDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 175/364 (48%), Gaps = 9/364 (2%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           PD      L+  L  +    EA ++         P +  + +++ G+C  G++  A+   
Sbjct: 96  PDAGTCAALIKKLSASGRTAEARRVL----AACGPDVMAYNAMMAGYCGAGQVDAARR-- 149

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
               +   E D    + L+ G    G+  +A  +L EM R+ C P+  +YT+L++A C+ 
Sbjct: 150 -WCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKR 208

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
              ++A +   EM   GC  D+VTY  +++G C+  ++D   E L ++   G  PN ++Y
Sbjct: 209 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 268

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++      E  E+  ELMGEM + GC P+V  +N++I   C+ G ++ A+ V  ++  
Sbjct: 269 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 328

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
              SP + S+  ++H F  Q  + +A  +   MV RG    P   +   LL +L R+ +V
Sbjct: 329 YGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY--PDIVSYNTLLTALCRSGEV 386

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           ++A ++   +  KGC   + ++   I  L   G  KEA     +M+   + P   T++ +
Sbjct: 387 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 446

Query: 567 MRGL 570
             GL
Sbjct: 447 AAGL 450


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 241/489 (49%), Gaps = 36/489 (7%)

Query: 83  KFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA-----SKQPNYVHS 137
           K HS L  L   +   G+         +IN       +G+ + + A       QP+    
Sbjct: 75  KHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTA-- 132

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIE 195
              +  LI+ +    K G    L ++M  E  +P ++T   +  L+           AI 
Sbjct: 133 --TFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVT---YGTLINGLCKVGNTSAAIR 187

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
           +L  M +  C+P+ F +  ++D+LCK+  V EA  LF EM  +   P +  + SL++  C
Sbjct: 188 LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALC 247

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              +      +L +M D+   PD+V +N ++    + GK+T+A +++ +M ++G +PN  
Sbjct: 248 NLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVV 307

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR-------- 366
           +YT L+   C + +M+EA + F  M   GC  +V++Y TLI+G+CK ++ID+        
Sbjct: 308 TYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLM 367

Query: 367 ----CY-------EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
               CY       ++ D+M+ +G +PN ++Y  ++  + K + +++ + L GEM +   +
Sbjct: 368 DXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELI 427

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD   Y+ +I   C +  L++A+ +++EM A S  P   ++ +++        L EA   
Sbjct: 428 PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMAL 487

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            K + G  L   P        ++ + RA ++E A+D++S + +KG + +V+ ++I I+ L
Sbjct: 488 LKAIEGSNL--DPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGL 545

Query: 536 FSNGHVKEA 544
              G + EA
Sbjct: 546 CRRGLLDEA 554



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 208/442 (47%), Gaps = 26/442 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+    + +L  +M      P + T     IL+  F     V  A  VL 
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLH---ILINSFCHLNRVGFAFSVLA 120

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  +C    + EA  LFD+M  E F+P +  + +L+ G CK G
Sbjct: 121 KILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVG 180

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M     +P++  YN ++    +  ++T+AF L  EM  KG  P+  +Y 
Sbjct: 181 NTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYN 240

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI ALC + + +       EM  S    DVV++ T++   CK  K+   ++++D MIQR
Sbjct: 241 SLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H    E++E V++   M   GC+P+V +YN +I   CK+  + +A
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKA 360

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++    M+        D                EA + F  MV +G +  P   +   L+
Sbjct: 361 IHYTXLMDXXCCYLNMD----------------EAVKVFDTMVCKGCM--PNVISYNTLI 402

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N   + Q+++ A  ++  +  +    +   ++  IH L     +++A +   +M+    +
Sbjct: 403 NGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI 462

Query: 558 PQPDTFAKLMRGLKKLYNRQIA 579
           P   T+  L+  L K  NR +A
Sbjct: 463 PNLVTYRILLDYLCK--NRYLA 482



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 200/432 (46%), Gaps = 33/432 (7%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASAR 188
           QPN       Y  +I SL K R+    + L  EM  +    I+ ++F    L+    +  
Sbjct: 198 QPNVF----AYNTIIDSLCKDRQVTEAFNLFSEMVTKG---ISPDIFTYNSLIHALCNLC 250

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K    +L+EM      PD   F  ++DALCK   V EA  + D+M +R  +P++  +T
Sbjct: 251 EWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYT 310

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK-------------- 293
           +L+ G C   ++ EA  V   M   G  P+++ YN L++GY ++ +              
Sbjct: 311 ALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXX 370

Query: 294 -----MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
                M +A ++   M  KGC PN  SY  LI   C+++++++A   F EM R     D 
Sbjct: 371 CCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDT 430

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           VTY+TLI G C   ++     +   M+    +PN +TY  ++    K   L E + L+  
Sbjct: 431 VTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKA 490

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           +      PD+   N+ I   C+ GEL+ A ++++ + +  L P   ++ +M++G   +G 
Sbjct: 491 IEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGL 550

Query: 469 LIEACEYFKEMVGRG-LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
           L EA + F+EM   G  L+   Y T+       LR  +   A  +   +V +G   +   
Sbjct: 551 LDEASKLFREMDENGCTLNGCIYNTIT---RGFLRNNETSRAIQLLQEMVARGFSADAST 607

Query: 528 WTIWIHSLFSNG 539
            T+++  L  +G
Sbjct: 608 MTLFVKMLSDDG 619



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 18/306 (5%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  V +N LL+  A+M   +    L  +M   G  PN  +  +LI + C + ++  A   
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G C   KI     + D MI  G  P+ +TY  ++    K
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+G M +  C P+V  YN +I   CK  ++ EA N+++EM    +SP   +
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 456 FVVMVHGFLGQGCLIEACEY------FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  ++H       L   CE+        EMV   ++  P   +   ++++L +  KV  A
Sbjct: 239 YNSLIHA------LCNLCEWKHVATLLNEMVDSKIM--PDVVSFNTVVDALCKEGKVTEA 290

Query: 510 KDVWSCIVTKGCELNVYAWTIWI--HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            DV   ++ +G E NV  +T  +  H L S   + EA      M+    MP   ++  L+
Sbjct: 291 HDVVDKMIQRGVEPNVVTYTALMDGHCLLS--EMDEAVKVFDTMVCKGCMPNVISYNTLI 348

Query: 568 RGLKKL 573
            G  K+
Sbjct: 349 NGYCKI 354



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 121/269 (44%), Gaps = 4/269 (1%)

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           ++ A  +F  M R       V +  L++   K +       +   M   GI PN  T LH
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYT-LH 100

Query: 389 IML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
           I++ +      +     ++ ++ K+G  PD + +  +IR  C  G++ EA++++++M   
Sbjct: 101 ILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGE 160

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   ++  +++G    G    A      MV +     P       +++SL + ++V 
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN--CQPNVFAYNTIIDSLCKDRQVT 218

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A +++S +VTKG   +++ +   IH+L +    K   +   +M+D+ +MP   +F  ++
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 278

Query: 568 RGLKKLYNRQIAAEITEKVRKMAAERQIT 596
             L K      A ++ +K+ +   E  + 
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVV 307


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 217/466 (46%), Gaps = 39/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++K +    + +L  +M      P + T     I++        V  A   L 
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYT---LAIVINSLCHLNRVDFAFSALA 129

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  LC    + EA  LFD+M  E F+P++  + +L+ G CK G
Sbjct: 130 KILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 189

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +P++VV++ L+    +  ++T+AF +  EM  KG  PN  +Y 
Sbjct: 190 NTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYN 249

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC++ + +       EM  S    DV T  T++   CK   +   ++++D MI R
Sbjct: 250 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR 309

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H  + E++  V++   M    CV +V +YN +I   CK+  + +A
Sbjct: 310 GVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKA 369

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-------------- 483
           + ++ EM    L+P T ++  ++HG    G L +A   F EMV RG              
Sbjct: 370 MYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429

Query: 484 ------------LLSA-------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                       LL A       P       +L+ + RA ++E A+D++S + +KG + N
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V+ + I IH L   G + EA     +M      P   T+  + RG 
Sbjct: 490 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 170/357 (47%), Gaps = 10/357 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QPN V    V+  LI SL K R+    + +  EM  +   P ++T    +  + +    +
Sbjct: 207 QPNVV----VFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 262

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V     +++EM      PD F    ++DALCK   V EA  + D M  R  +P++  + 
Sbjct: 263 HVTT---LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 319

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G C   ++  A  V   M       +++ YN L++GY ++  +  A  L +EM R+
Sbjct: 320 ALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ 379

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  +Y  LI  LC + ++++A   F EM   G   D+VTY TL    CK+R +D+ 
Sbjct: 380 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKA 439

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L ++      P+   Y  I+    +  ELE+  +L   +   G  P+V  YN++I  
Sbjct: 440 MALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHG 499

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            CK G L EA  +++EM     SP   ++ ++  GFL     +   E  +EM+ RG 
Sbjct: 500 LCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGF 556



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 170/355 (47%), Gaps = 16/355 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASAR 188
            PN V     Y +LI  L K+ ++  V  LM EM   K   I  +VF +  ++       
Sbjct: 242 SPNIV----TYNSLIHGLCKLCEWKHVTTLMNEMVDSK---IMPDVFTLNTVVDALCKEG 294

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           MV +A +V+D M   G EP+   +  L+D  C  + V  A K+FD M  +    ++  + 
Sbjct: 295 MVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYN 354

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+CK   + +A Y+  +M      P+ V YN L+ G   +G++ DA  L  EM  +
Sbjct: 355 TLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 414

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y  L   LC+   +++A      +E S  + D+  YTT++ G C++ +++  
Sbjct: 415 GQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 474

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++  ++  +G+ PN  TY  ++    K+  L E  +L  EM K GC P+   YN++ R 
Sbjct: 475 RDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRG 534

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA-----CEYFK 477
             +  E    + +  EM A   S    +  ++V G L    L ++     C+Y +
Sbjct: 535 FLRNNEALRTIELLEEMLARGFSVDVSTTTLLV-GMLSDDGLDQSVKQILCKYVQ 588



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 145/319 (45%), Gaps = 14/319 (4%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  V +N LL+  A+    +    L ++M   G  P+  +  ++I +LC + +++ A  A
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G C   KI     + D MI  G  PN +TY  ++    K
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+  M +  C P+V  ++ +I   CK  ++ EA N+++EM    +SP   +
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVT 247

Query: 456 FVVMVHGFLGQGCLIEACEY------FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  ++HG      L + CE+        EMV   ++  P   TL  ++++L +   V  A
Sbjct: 248 YNSLIHG------LCKLCEWKHVTTLMNEMVDSKIM--PDVFTLNTVVDALCKEGMVAEA 299

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            DV   ++ +G E NV  +   +        V  A      M+  D +    ++  L+ G
Sbjct: 300 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359

Query: 570 LKKLYNRQIAAEITEKVRK 588
             K+ +   A  + E++ +
Sbjct: 360 YCKIQSVDKAMYLFEEMSR 378


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 202/389 (51%), Gaps = 8/389 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A ++ +++    L+   V  +  ++      ++V +A ++  
Sbjct: 193 YGTLIHGLCKV---GETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFS 249

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+   C    +K+A  LF++M  E  KP +  F  L+  +CK+G
Sbjct: 250 EMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDG 309

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ E K V   M   G +P+ V YN+L+ GY  + ++  A  +   M + G +P+  SY+
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYS 369

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++K +EA   F EM R     DVVTY++LI G  KS +I    +++D M  R
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN  TY  I+ A  K  ++++ + L+ + +  G  PD+S Y+++I+  C+ G+L++A
Sbjct: 430 GVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDA 489

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+ ++     +    ++ +M+ GF  +G   EA     +M   G +  P   T + ++
Sbjct: 490 RKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCI--PDAKTYEIII 547

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
            SL +  + +MA+ +   ++ +G  LN Y
Sbjct: 548 LSLFKKDENDMAEKLLREMIARGLPLNFY 576



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 225/487 (46%), Gaps = 42/487 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL K + +  V  L ++M  R  KP L+      IL+  F    ++  A  V  
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCN---ILINCFCQLGLIPFAFSVFA 144

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++ K G  PD   F  L   LC    +++A    D++    F      + +L++G CK G
Sbjct: 145 KILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A  +L ++     +P++V+YN ++    ++  + +AF+L  EM  KG  P+  +Y+
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYS 264

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C + K+++A   F +M     + DV T+  L++ FCK  K+     + D M+++
Sbjct: 265 ALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI PN +TY  +M  +   +E+ +   +   M + G  PD+ +Y+++I   CK+ +  EA
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEA 384

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG----------LLSA 487
           +N++ EM   ++ P   ++  ++ G    G +  A +   +M  RG          +L A
Sbjct: 385 MNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDA 444

Query: 488 -----------------------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                                  P   T   L+  L ++ K+E A+ V+  ++ KG  L+
Sbjct: 445 LCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLD 504

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           VYA+TI I      G   EA +    M D   +P   T+  ++  L K     +A ++  
Sbjct: 505 VYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKL-- 562

Query: 585 KVRKMAA 591
            +R+M A
Sbjct: 563 -LREMIA 568



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 181/375 (48%), Gaps = 3/375 (0%)

Query: 222 NSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           N+ V +A  LF+ + R    P    F  +L    K        Y+  +M+  G +P++V 
Sbjct: 63  NNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 122

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
            N L++ + Q+G +  AF +  ++ + G  P+  ++T L + LC   ++++A     ++ 
Sbjct: 123 CNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVV 182

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   D ++Y TLI G CK  +     ++L  +    + PN + Y  I+ +  K + + 
Sbjct: 183 ALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVN 242

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  +L  EM   G  PDV  Y+ +I   C LG+LK+A++++N+M   ++ P   +F ++V
Sbjct: 243 EAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILV 302

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           + F   G + E    F  M+ +G+   P + T  +L++     ++V  AK +++ +   G
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQGI--KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
              ++ +++I I+         EA +   +M   +++P   T++ L+ GL K      A 
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYAL 420

Query: 581 EITEKVRKMAAERQI 595
           ++ +++        I
Sbjct: 421 QLVDQMHDRGVPPNI 435



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + + Y++  + +     + DA  L   + R+   P A  +  ++ +L + +         
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +ME  G + ++V    LI+ FC+   I   + +   +++ G +P+ +T+  +      K
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLK 168

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            ++++      ++  +G   D  +Y  +I   CK+GE + A+++   ++   + P     
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN---- 224

Query: 457 VVMVHGFLGQGCLI----EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
           VVM +  +   C +    EA + F EMV +G+  +P   T  AL++      K++ A D+
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGI--SPDVVTYSALISGFCILGKLKDAIDL 282

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           ++ ++ +  + +VY + I +++   +G +KE  +    MM   + P   T+  LM G
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 110/264 (41%), Gaps = 13/264 (4%)

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
           N  F  +  S  + + ++Y++  + F  +  +D    + + +++R   P    +  I+ +
Sbjct: 35  NTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGS 94

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K +     + L  +M   G  P++ N N++I   C+LG +  A +V+ ++      P 
Sbjct: 95  LVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPD 154

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKD 511
           T +F  +  G   +G + +A  +  ++V  G       YGT   L++ L +  +   A D
Sbjct: 155 TITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGT---LIHGLCKVGETRAALD 211

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL- 570
           +   +     + NV  +   I S+     V EA     +M+   + P   T++ L+ G  
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFC 271

Query: 571 --------KKLYNRQIAAEITEKV 586
                     L+N+ I   I   V
Sbjct: 272 ILGKLKDAIDLFNKMILENIKPDV 295


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 219/430 (50%), Gaps = 7/430 (1%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINR-CGD-AGNLGYRYYMWASK 130
           D++++  ILKK +     +  AL   GV     L  +++NR C D    LG   + WA  
Sbjct: 100 DIDRVSEILKKHYPCTDSVVQALNDCGVNPTNNLISQLLNRFCNDWVPALGL--FTWAKH 157

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q  YVH  D+Y  ++  L + +KF  +W L++EM   +   ++      +MRR A A   
Sbjct: 158 QTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMENLE-GYVSLVTMKKVMRRLARAGNF 216

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
           + A+E    + K G   D      L+DAL K  SV+ A   F E ++      + F  LL
Sbjct: 217 QDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILL 276

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G+CK  KL +A+ ++ +M   GF+P++V Y   +  Y ++    +   +  EM+ K C 
Sbjct: 277 HGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCK 336

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +YT+ + AL + +++ +A   +  M+ + C  D   Y++LI    +S ++   +++
Sbjct: 337 PNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDV 396

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + M ++G+ P+ LTY  ++ +     E E  ++L+  M +  C PD+  Y  ++++ C+
Sbjct: 397 FEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCR 456

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              +K    + N M   ++S    ++V++V G    G L  AC +F+EMV +GL+  P+ 
Sbjct: 457 KKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLI--PRD 514

Query: 491 GTLKALLNSL 500
            T K L+  L
Sbjct: 515 RTYKMLVEEL 524



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 133/324 (41%), Gaps = 17/324 (5%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKE-----------MRRKGCDPNANSYTVLIQALCR 325
           DI    N L  +AQ+  +    E+LK+           +   G +P  N  + L+   C 
Sbjct: 84  DIKEVGNHLLFHAQVSDIDRVSEILKKHYPCTDSVVQALNDCGVNPTNNLISQLLNRFCN 143

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
            + +           ++G       Y  ++    + +K    +E++  M       + +T
Sbjct: 144 -DWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMENLEGYVSLVT 202

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
              +M    +    ++ VE    + K+G   D+   NV++    K G ++ A + + E +
Sbjct: 203 MKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFK 262

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
             S+     SF +++HG+     L +A +   EM  +G    P   +    +    + + 
Sbjct: 263 D-SIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGF--QPNVVSYTCFIELYCKLKD 319

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFA 564
               + ++S +  K C+ NV  +TI++H+L     V +A     +MM ++  +P    ++
Sbjct: 320 FRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALE-VYEMMKSNCCVPDASFYS 378

Query: 565 KLMRGLKKLYNRQIAAEITEKVRK 588
            L+  L +    + A ++ E ++K
Sbjct: 379 SLIFVLTQSGRLKDAWDVFEDMKK 402



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI  L++  +    W + E+M+K+   P L+T   +  ++    +    + A+++L 
Sbjct: 377 YSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLT---YNTMITSACTHLEEENALKLLR 433

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M +  C+PD   +  LL   C+   +K    L + M +      L  +  L+ G CK G
Sbjct: 434 RMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSG 493

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           KL  A     +M   G  P    Y  L+    Q   +T+A E ++++  +  D  A
Sbjct: 494 KLELACSFFEEMVMKGLIPRDRTYKMLVEELEQ-NNLTEAKEKIQKLMFQTEDQTA 548


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 225/455 (49%), Gaps = 7/455 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ++IKSL K  K    + ++EEM      P +     F  +M+ FA +  ++KA EV 
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFA---FNGVMQGFARSNNMEKAREVY 68

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKE 256
             M + G +PD   +  L+  L K   + E+ K+  EM  R + PS++ ++SL+    K 
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++  A  +  +M   G  PD +++  L+ G  Q GK+ DA E  K+M + GC PN   Y
Sbjct: 129 RRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVY 188

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            VL+  LC   ++E+AN  F EM+   C  DVVTY TL+   CK+R+++   ++ ++M  
Sbjct: 189 NVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRA 248

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G +PN +T+  ++    +  ELE+ +E+ G M + GC P+   Y  +I   C+  ++ +
Sbjct: 249 AGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQ 308

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++ +M  A + P   ++  ++ G+  +G + EA + ++EM G   L  P   T   L
Sbjct: 309 ARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQ-PTIVTFNTL 367

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++   +  K+  A ++ + + TKG   +   + I I  L     + EA      M +   
Sbjct: 368 IDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKF 427

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           +  P +    + GL K  N   A  + E  RK  A
Sbjct: 428 LLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGA 462



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 7/251 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+ ++ K R+      L E MR     P +IT   F  L+        ++KA+EV 
Sbjct: 222 TYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVIT---FSTLIHGLCRTGELEKALEVF 278

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
             M + GC+P+++ +  L+  LC+   V +A +LF++M +    P    + SL+ G+CK 
Sbjct: 279 GSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR 338

Query: 257 GKLVEAKYVLVQMKD-AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           G + EA+ +  +M   AG +P IV +N L+ G+ ++GK+  A EL+ EM  KG   ++ +
Sbjct: 339 GSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCT 398

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +LI  L R  K++EA   + +M       D V+  + + G CK+  ID+ Y + ++  
Sbjct: 399 YRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATR 458

Query: 376 QRGILPNQLTY 386
           + G +PN  T+
Sbjct: 459 KSGAVPNPETF 469



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 164/355 (46%), Gaps = 7/355 (1%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M+D     ++  Y++++    +  K  +++++L+EM   GC+P+  ++  ++Q   R   
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           ME+A   +  M  SG + D V+Y  LI G  K  K+D   +IL  M+ RG  P+   Y  
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++ A  K   ++    L  EM + G  PD   +  +I   C+ G++K+A   + +M    
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P    + V++HG    G L +A   F EM       +P   T   LL+++ +A++VE 
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS--CSPDVVTYNTLLDAVCKARRVEE 238

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
              ++  +   G   NV  ++  IH L   G +++A      M++A   P   T+  L+ 
Sbjct: 239 GCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIS 298

Query: 569 GLKKLYNRQIAAEITEKVRKM-----AAERQITFKMYKRRGERDLKEKAKKQVDG 618
           GL +      A E+ EK+ +      A         Y +RG  D  EK  +++ G
Sbjct: 299 GLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSG 353



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 11/324 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QPN      VY  L+  L    +      L  EM+     P ++T   +  L+     AR
Sbjct: 182 QPNV----PVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVT---YNTLLDAVCKAR 234

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
            V++  ++ + M   G  P+   F  L+  LC+   +++A ++F  M E   KP+   +T
Sbjct: 235 RVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYT 294

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR- 306
           +L+ G C+  K+++A+ +  +M  A   PD V YN+L++GY + G M +A +L +EM   
Sbjct: 295 TLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 354

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P   ++  LI   C++ K+  AN    EM   G  AD  TY  LI+G  ++ K+D 
Sbjct: 355 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDE 414

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+   M ++  L + ++ +  +    K   +++   +    RK G VP+   + ++  
Sbjct: 415 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 474

Query: 427 LACKLGELKEAVNVWNEMEAASLS 450
              KLG +++A  +    +A  ++
Sbjct: 475 SLIKLGRVEDAQKLMEPAKARDIT 498


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 198/374 (52%), Gaps = 13/374 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K  A W ++ EM      P L+T   +  L+     AR V  A+ ++ 
Sbjct: 229 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT---YNSLLHGLCRARRVSDALALMR 285

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M   GC P+   +G L+D LCK   VK+A  +  +M ++   P L  +  L+ G CK  
Sbjct: 286 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 345

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ E+  +L +    G +PD+V Y++++ G  +  ++ +A  LL  ++ +GC P+   Y+
Sbjct: 346 QVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS 405

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC+  K++EA   +  M   GC+ADVVTY+TLI G CK+ ++D  + +L  M++ 
Sbjct: 406 TLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM 465

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ +TY  ++        L+E +EL+ EM +  C P    YN++I   C++  +  A
Sbjct: 466 GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSA 525

Query: 438 VNVWNEMEAASLSPG-----TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           V +  + +A  ++ G     T ++  ++ G    G + EA +YF+EM+  G++  P + T
Sbjct: 526 VVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVI--PDHIT 583

Query: 493 LKALLNSLLRAQKV 506
              LL  L +++ +
Sbjct: 584 YSILLEGLKKSKDL 597



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 215/435 (49%), Gaps = 11/435 (2%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T ++  L+      + + +A+ +L EM  +GCEP+   +  L+D LCKN+    A +LF+
Sbjct: 79  TVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFE 138

Query: 234 EMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM-------KDAGFEPDIVVYNNLL 285
            M+     PS+  + +LL G  + GKL  A  +  +M        D    P+++ Y+ L+
Sbjct: 139 HMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLI 198

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  +  +++ A ELL+ M+ +GC P+  +YT+L+  LC+  K+  A     EM  +GC 
Sbjct: 199 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 258

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            ++VTY +L+ G C++R++     ++  M  RG  PN +TY  ++    K   +++   +
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + +M   G  PD+  YN++I   CK  ++ E++ +     +  + P   ++  +++G   
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 378

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
              L EAC     +  RG    P       L++ L +A KV+ A D++  +   GC+ +V
Sbjct: 379 SNRLDEACRLLLYVKSRG--CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADV 436

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
             ++  I  L   G V EA      M+     P   T+  L++GL  L +   A E+ E+
Sbjct: 437 VTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEE 496

Query: 586 V-RKMAAERQITFKM 599
           + R   A   +T+ +
Sbjct: 497 MERSNCAPSAVTYNI 511



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 216/447 (48%), Gaps = 20/447 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK---------PQLITTEVFVILMRRFASARMVK 191
           Y  L+  L +  K     AL +EM   +         P +IT   + +L+     A  V 
Sbjct: 152 YNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVIT---YSVLIDGLCKANRVS 208

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+E+L+ M   GC PD   +  L+D LCK S V  A ++  EM +    P+L  + SLL
Sbjct: 209 QAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLL 268

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G C+  ++ +A  ++  M   G  P++V Y  L+ G  ++G++ DA  +L +M  KG  
Sbjct: 269 HGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGT 328

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+   Y +LI  LC+ ++++E+          G + DVVTY+++I G C+S ++D    +
Sbjct: 329 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 388

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  +  RG  P+ + Y  ++    K  +++E  +L   M   GC  DV  Y+ +I   CK
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK 448

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G + EA  +   M      P T ++  ++ G      L EA E  +EM       AP  
Sbjct: 449 AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSN--CAPSA 506

Query: 491 GTLKALLNSLLRAQKVEMAKDVWS-----CIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            T   L++ + R ++V+ A  +       C+   G  L+  A++  I  L   G V EA 
Sbjct: 507 VTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEAL 566

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
            Y  +M+D  V+P   T++ L+ GLKK
Sbjct: 567 DYFQEMIDNGVIPDHITYSILLEGLKK 593



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 201/413 (48%), Gaps = 13/413 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P + T   +  L+R F     + +A    DEM      P+ F+   L+D LCK     +
Sbjct: 6   QPDVYT---YAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSID 62

Query: 228 AAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A + F  M+          +T+LL G  KE +L +A  +L +M+D G EP++V YN+L+ 
Sbjct: 63  ALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLID 122

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM--ERSG- 343
           G  +  +   A EL + M+   C P+  +Y  L+  L R  K+E A   F EM   RS  
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182

Query: 344 ----CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
               C  +V+TY+ LI G CK+ ++ +  E+L+SM  RG  P+ +TY  ++    K+ ++
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 242

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
               E++ EM   GCVP++  YN ++   C+   + +A+ +  +M     +P   ++  +
Sbjct: 243 AAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL 302

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G    G + +AC    +M+ +G    P       L+N L +A +V+ +  +    V+ 
Sbjct: 303 IDGLCKVGRVKDACAMLADMIDKG--GTPDLMIYNMLINGLCKADQVDESIALLRRAVSG 360

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G + +V  ++  I+ L  +  + EAC   L +      P    ++ L+ GL K
Sbjct: 361 GIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 413



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 146/284 (51%), Gaps = 14/284 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI  L K  +     AL+        KP ++T    +  + R   +  + +A  +L
Sbjct: 333 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR---SNRLDEACRLL 389

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
             +   GC PD  ++  L+D LCK   V EA  L++ M  +     +  +++L+ G CK 
Sbjct: 390 LYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKA 449

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ EA  +L +M   G  P  + YN+L+ G   +  + +A EL++EM R  C P+A +Y
Sbjct: 450 GRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTY 509

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEA------DVVTYTTLISGFCKSRKIDRCYEI 370
            +LI  +CRME+++ A    +E  ++ C A      D + Y++LI G CK+ ++    + 
Sbjct: 510 NILIHGMCRMERVDSA-VVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDY 568

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL-MGEMRKIG 413
              MI  G++P+ +TY  ++   +K ++L E   L + +M ++G
Sbjct: 569 FQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 612



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 11/270 (4%)

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS-RKID-- 365
           C P+  +Y  L++  CR  ++++A R F EM       +V   + LI G CK+ R ID  
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           RC+    +M   GI+ + + Y  ++    K++ L++ + ++ EMR  GC P+V  YN +I
Sbjct: 65  RCFR---AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLI 121

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR--- 482
              CK  E   A  ++  M++   SP   ++  ++ G    G L  A   F+EM+ R   
Sbjct: 122 DGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSH 181

Query: 483 --GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
                 +P   T   L++ L +A +V  A ++   +  +GC  +V  +TI +  L     
Sbjct: 182 DMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 241

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V  A     +M+DA  +P   T+  L+ GL
Sbjct: 242 VAAAWEVLREMLDAGCVPNLVTYNSLLHGL 271


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 217/466 (46%), Gaps = 39/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++K +    + +L  +M      P + T     I++        V  A   L 
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYT---LAIVINSLCHLNRVDFAFSALA 129

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  LC    + EA  LFD+M  E F+P++  + +L+ G CK G
Sbjct: 130 KILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 189

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +P++VV++ L+    +  ++T+AF +  EM  KG  PN  +Y 
Sbjct: 190 NTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYN 249

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC++ + +       EM  S    DV T  T++   CK   +   ++++D MI R
Sbjct: 250 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR 309

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H  + E++  V++   M    CV +V +YN +I   CK+  + +A
Sbjct: 310 GVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKA 369

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-------------- 483
           + ++ EM    L+P T ++  ++HG    G L +A   F EMV RG              
Sbjct: 370 MYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429

Query: 484 ------------LLSA-------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                       LL A       P       +L+ + RA ++E A+D++S + +KG + N
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V+ + I IH L   G + EA     +M      P   T+  + RG 
Sbjct: 490 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 170/357 (47%), Gaps = 10/357 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QPN V    V+  LI SL K R+    + +  EM  +   P ++T    +  + +    +
Sbjct: 207 QPNVV----VFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 262

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V     +++EM      PD F    ++DALCK   V EA  + D M  R  +P++  + 
Sbjct: 263 HVTT---LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 319

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G C   ++  A  V   M       +++ YN L++GY ++  +  A  L +EM R+
Sbjct: 320 ALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ 379

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  +Y  LI  LC + ++++A   F EM   G   D+VTY TL    CK+R +D+ 
Sbjct: 380 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKA 439

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L ++      P+   Y  I+    +  ELE+  +L   +   G  P+V  YN++I  
Sbjct: 440 MALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHG 499

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            CK G L EA  +++EM     SP   ++ ++  GFL     +   E  +EM+ RG 
Sbjct: 500 LCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGF 556



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 161/333 (48%), Gaps = 10/333 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASAR 188
            PN V     Y +LI  L K+ ++  V  LM EM   K   I  +VF +  ++       
Sbjct: 242 SPNIV----TYNSLIHGLCKLCEWKHVTTLMNEMVDSK---IMPDVFTLNTVVDALCKEG 294

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           MV +A +V+D M   G EP+   +  L+D  C  + V  A K+FD M  +    ++  + 
Sbjct: 295 MVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYN 354

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+CK   + +A Y+  +M      P+ V YN L+ G   +G++ DA  L  EM  +
Sbjct: 355 TLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 414

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y  L   LC+   +++A      +E S  + D+  YTT++ G C++ +++  
Sbjct: 415 GQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 474

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++  ++  +G+ PN  TY  ++    K+  L E  +L  EM K GC P+   YN++ R 
Sbjct: 475 RDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRG 534

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             +  E    + +  EM A   S    +  ++V
Sbjct: 535 FLRNNEALRTIELLEEMLARGFSVDVSTTTLLV 567



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 145/319 (45%), Gaps = 14/319 (4%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  V +N LL+  A+    +    L ++M   G  P+  +  ++I +LC + +++ A  A
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G C   KI     + D MI  G  PN +TY  ++    K
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+  M +  C P+V  ++ +I   CK  ++ EA N+++EM    +SP   +
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVT 247

Query: 456 FVVMVHGFLGQGCLIEACEY------FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  ++HG      L + CE+        EMV   ++  P   TL  ++++L +   V  A
Sbjct: 248 YNSLIHG------LCKLCEWKHVTTLMNEMVDSKIM--PDVFTLNTVVDALCKEGMVAEA 299

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            DV   ++ +G E NV  +   +        V  A      M+  D +    ++  L+ G
Sbjct: 300 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359

Query: 570 LKKLYNRQIAAEITEKVRK 588
             K+ +   A  + E++ +
Sbjct: 360 YCKIQSVDKAMYLFEEMSR 378



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 10/195 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y  LI  L  + +     +L  EM  R + P L+T   +  L       R 
Sbjct: 383 PNTV----TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVT---YRTLSDYLCKNRH 435

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + KA+ +L  +     +PD  ++  +LD +C+   +++A  LF  +  +  +P++  +  
Sbjct: 436 LDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNI 495

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +++G CK+G L EA  +  +M   G  P+   YN +  G+ +  +     ELL+EM  +G
Sbjct: 496 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG 555

Query: 309 CDPNANSYTVLIQAL 323
              + ++ T+L+  L
Sbjct: 556 FSVDVSTTTLLVGML 570


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 197/404 (48%), Gaps = 9/404 (2%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           RK  P + T   + IL+     A    KA E+L EM   G  PD   F  ++D LCK   
Sbjct: 4   RKVAPDVFT---YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
            + A  L   M ER  +PS   + +L+ G CK+  +  AK ++ +   +GF PD+V Y+ 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L  G  + G++ +AFEL+KEM   GC PN  +Y  LI  LC+  K E+A      +  SG
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              DVVTYT ++ G CK  ++D+  ++++ M++RG  P+ +TY  +M    +   ++E  
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 240

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +  EM    C  D   Y  ++   CK    KEA  V + +     +P  D +  ++ G+
Sbjct: 241 HIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALMDGY 297

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             +G L E    F++M  RG +  P   T   +++ L +  KV+ A      + + GC  
Sbjct: 298 CKEGRLDEIPNVFEDMACRGCV--PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVP 355

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           +V ++ I I  LF     KEA      M+ A + P   T+  LM
Sbjct: 356 DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLM 399



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 192/381 (50%), Gaps = 6/381 (1%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           PD F +  L+D LCK S   +A+++  EM +R   P    F S++ G CK GK   A  +
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L  M +    P    YN L+SG  +   +  A  L+ E    G  P+  +Y++L   LC+
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
             +++EA     EM  +GC  ++VTY TLI G CK+ K ++ YE+L++++  G +P+ +T
Sbjct: 128 RGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVT 187

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  I+    K+  L++ ++++  M K GC P V  Y  ++   C+ G + EA +++ EM 
Sbjct: 188 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 247

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
           +   +    ++V +V+G+       EA     + V  G+   P      AL++   +  +
Sbjct: 248 SKDCTADALAYVSLVNGYCKSSRTKEA-----QKVVDGIRGTPYIDVYNALMDGYCKEGR 302

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++   +V+  +  +GC  N+  + I +  L  +G V EA  +   M  A  +P   ++  
Sbjct: 303 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNI 362

Query: 566 LMRGLKKLYNRQIAAEITEKV 586
           ++ GL K    + A ++ +++
Sbjct: 363 IIDGLFKASKPKEARQVLDQM 383



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/472 (26%), Positives = 211/472 (44%), Gaps = 39/472 (8%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
            +V     Y  ++  L K  +      ++E M K    P +IT   +  LM        V
Sbjct: 180 GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVIT---YTALMEGLCRTGRV 236

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
            +A  +  EM    C  D   +  L++  CK+S  KEA K+ D +R    P +  + +L+
Sbjct: 237 DEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--TPYIDVYNALM 294

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+CKEG+L E   V   M   G  P+I  YN ++ G  + GK+ +AF  L+ M   GC 
Sbjct: 295 DGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCV 354

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  SY ++I  L +  K +EA +   +M ++G   D VTY TL++ FCK  + D    I
Sbjct: 355 PDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGI 414

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV-SNYNVVIRLAC 429
           L +MI+ G+ P+ +TY  ++    +   L +  ELM EM + GCV    + YN +I   C
Sbjct: 415 LKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLC 474

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM---------- 479
           K G LK+A+ + + M    +   T ++ + +     +G L EA     EM          
Sbjct: 475 KEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYT 534

Query: 480 -VGRGLLSAPQYG--------------------TLKALLNSLLRAQKVEMAKDVWSCIVT 518
            V  GL  A Q                      T   L+++  + ++++ A  +   +V 
Sbjct: 535 TVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQ 594

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +GC  +V  + + I  L     V +A     +M    ++    ++  L+ GL
Sbjct: 595 RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGL 646



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 184/381 (48%), Gaps = 46/381 (12%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           DVY AL+    K  +   +  + E+M  R   P + T   + I+M        V +A   
Sbjct: 288 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKT---YNIVMDGLCKHGKVDEAFPF 344

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L+ M   GC PD   +  ++D L K S  KEA ++ D+M +    P    + +L+  +CK
Sbjct: 345 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC------ 309
           E +  +A  +L  M  AG +PD V YN L+SG +Q  ++ DA+EL+ EM R GC      
Sbjct: 405 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 464

Query: 310 ------------------------------DPNANSYTVLIQALCRMEKMEEANRAFVEM 339
                                         + N  +Y + I  LC+  +++EA+    EM
Sbjct: 465 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 524

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEE 398
           +      D V+YTT+I G CK+ ++DR  ++   M+  +G+     T+  ++ A  K + 
Sbjct: 525 DTL---RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKR 581

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L+E + L+  M + GC P V  YN+VI   CKL ++ +A  +++EM    +   + S+ V
Sbjct: 582 LDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 641

Query: 459 MVHGFLGQGCLIEACEYFKEM 479
           +++G  GQG   EA +  +EM
Sbjct: 642 LIYGLCGQGRGKEALQVLEEM 662



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 13/286 (4%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A   P+ V     Y  LI  LS+  + G  + LM EM +    +     +  ++ R    
Sbjct: 421 AGVDPDNV----TYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKE 476

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH-- 245
             +K+A+ ++D M  +G E +   +   +D LCK   + EA+ L  EM      +LR   
Sbjct: 477 GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM-----DTLRDEV 531

Query: 246 -FTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
            +T+++ G CK  +L  A  +  +M    G       +N L+  + +  ++ +A  LL+ 
Sbjct: 532 SYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLEL 591

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M ++GC P+  +Y ++I  LC+++K+++A   F EM   G  A  V+YT LI G C   +
Sbjct: 592 MVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGR 651

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
                ++L+ M       + L    + LA   +   EE  EL+  M
Sbjct: 652 GKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I  L K  +      L  EM   K   IT+  F +L+  F   + + +A+ +L+ M
Sbjct: 533 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELM 592

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + GC P    +  ++  LCK   V +A +LFDEM  R    S   +T L+YG C +G+ 
Sbjct: 593 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRG 652

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            EA  VL +M  +  E D +    L       G+  +A ELL+ M  K
Sbjct: 653 KEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRMTTK 700


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 243/468 (51%), Gaps = 16/468 (3%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILM 181
           Y M +      V+++ V   ++K+L  + +  +  AL+++M +    P  I   V+  L+
Sbjct: 206 YEMLSKGISPTVYTFGV---VMKALCLVNEVDSACALLKDMTRHGCVPNAI---VYQTLI 259

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FK 240
                   V + +++L+EM   GC PD   F   +  LCK   + EAAKL D M  R F 
Sbjct: 260 HALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFT 319

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P+   +  L++G C+ GK+ EA+ +L ++ +    P++V++N L++GY   G++ +A  +
Sbjct: 320 PNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAV 375

Query: 301 LKE-MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           + E M   GC P+  +Y  LI  LC+   +  A     EM+  GCE +V+TYT LI  FC
Sbjct: 376 MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 435

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  +++    +LD M  +G+  N + Y  ++ A  K E++++ + + G+M   GC PD+ 
Sbjct: 436 KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 495

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N +I   CK+ + +EA+ ++ +M    +   T ++  ++H FL +G + EA +   +M
Sbjct: 496 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 555

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           + RG        T   L+ +L RA  +E    ++  +++KG   N  +  I I+ L   G
Sbjct: 556 LFRG--CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 613

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +++ A  +  DM+   + P   T+  L+ GL K    Q A  + +K++
Sbjct: 614 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQ 661



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 219/450 (48%), Gaps = 12/450 (2%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA  Q  Y H +DVY  LI  L    +F  + AL+ +M++E   +    +F+++M+ +
Sbjct: 98  FQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEG-IVFRESLFILIMKHY 156

Query: 185 ASARMVKKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
             A +  +A  +L +M   Y CEP    +  +LD L   +  K    +F EM  +   P+
Sbjct: 157 GRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPT 216

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  F  ++   C   ++  A  +L  M   G  P+ +VY  L+    ++G++ +  +LL+
Sbjct: 217 VYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLE 276

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   GC P+ N++   I  LC+M ++ EA +    M   G   +  TY  L+ G C+  
Sbjct: 277 EMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMG 336

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE-MRKIGCVPDVSNY 421
           K+D    +L+ +      PN + +  ++  +  +  L+E   +M E M  +GC PD+  Y
Sbjct: 337 KVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 392

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   CK G L  A  + NEM+     P   ++ +++  F  +G L EA     EM G
Sbjct: 393 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 452

Query: 482 RGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           +GL L+A  Y     L+++L + +KV+ A +++  + +KGC+ +++ +   I  L     
Sbjct: 453 KGLALNAVGY---NCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 509

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +EA     DM+   V+    T+  L+   
Sbjct: 510 FEEALGLYQDMLLEGVIANTITYNTLIHAF 539



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 193/390 (49%), Gaps = 40/390 (10%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-------------- 235
           + +A +++D M   G  P+ F +G L+  LC+   V EA  L +++              
Sbjct: 303 IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLING 362

Query: 236 ---RERFK----------------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
              R R                  P +  + +L+ G CK+G LV A+ ++ +M+  G EP
Sbjct: 363 YVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEP 422

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           +++ Y  L+  + + G++ +A  +L EM  KG   NA  Y  LI ALC+ EK+++A   F
Sbjct: 423 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 482

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +M   GC+ D+ T+ +LI G CK  K +    +   M+  G++ N +TY  ++ A  ++
Sbjct: 483 GDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRR 542

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             ++E ++L+ +M   GC  D   YN +I+  C+ G +++ + ++ +M +  L+P   S 
Sbjct: 543 GAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC 602

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            ++++G    G +  A E+ ++M+ RGL   P   T  +L+N L +  + + A +++  +
Sbjct: 603 NILINGLCRTGNIQHALEFLRDMIHRGL--TPDIVTYNSLINGLCKTGRAQEALNLFDKL 660

Query: 517 VTKGCELNVYAWTIWI-----HSLFSNGHV 541
             +G   +   +   I       +F + H+
Sbjct: 661 QVEGICPDAITYNTLISWHCKEGMFDDAHL 690



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 192/401 (47%), Gaps = 9/401 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE- 199
           Y  L+  L +M K      L+ ++    P ++   +F  L+  + S   + +A  V+ E 
Sbjct: 325 YGVLMHGLCRMGKVDEARMLLNKV--PNPNVV---LFNTLINGYVSRGRLDEAKAVMHES 379

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   GC PD F +  L+  LCK   +  A +L +EM+ +  +P++  +T L+  +CKEG+
Sbjct: 380 MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 439

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA+ VL +M   G   + V YN L+S   +  K+ DA  +  +M  KGC P+  ++  
Sbjct: 440 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 499

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC++ K EEA   + +M   G  A+ +TY TLI  F +   +    ++++ M+ RG
Sbjct: 500 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 559

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              + +TY  ++ A  +   +E+ + L  +M   G  P+  + N++I   C+ G ++ A+
Sbjct: 560 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 619

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
               +M    L+P   ++  +++G    G   EA   F ++   G+   P   T   L++
Sbjct: 620 EFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI--CPDAITYNTLIS 677

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              +    + A  + S  V  G   N   W I + +    G
Sbjct: 678 WHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 149/331 (45%), Gaps = 41/331 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K     +   LM EM+ +  +P +IT   + IL+ RF     +++A  VLD
Sbjct: 392 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVIT---YTILIDRFCKEGRLEEARNVLD 448

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G   +   + CL+ ALCK+  V++A  +F +M  +  KP +  F SL++G CK  
Sbjct: 449 EMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVN 508

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-------- 309
           K  EA  +   M   G   + + YN L+  + + G M +A +L+ +M  +GC        
Sbjct: 509 KFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYN 568

Query: 310 ---------------------------DPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                                      +PN  S  +LI  LCR   ++ A     +M   
Sbjct: 569 GLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHR 628

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D+VTY +LI+G CK+ +      + D +   GI P+ +TY  ++  H K+   ++ 
Sbjct: 629 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 688

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
             L+      G +P+   + +++    K G+
Sbjct: 689 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 719



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 3/190 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-SLSPGTDSF 456
           E +    L+ +M++ G V   S + ++++   + G   +A  +  +M    S  P   S+
Sbjct: 126 EFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSY 185

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            V++   L   C       F EM+ +G+  +P   T   ++ +L    +V+ A  +   +
Sbjct: 186 NVVLDVLLAGNCPKVVPNVFYEMLSKGI--SPTVYTFGVVMKALCLVNEVDSACALLKDM 243

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
              GC  N   +   IH+L   G V E      +M+    +P  +TF   + GL K+   
Sbjct: 244 TRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRI 303

Query: 577 QIAAEITEKV 586
             AA++ +++
Sbjct: 304 HEAAKLVDRM 313


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 223/454 (49%), Gaps = 24/454 (5%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQ---HSGVVLRPGLTERVINRCGDAGNLGYRYY-- 125
           S   +++ R+L   H+     E  LQ     GV L   L  +++ R   A  L       
Sbjct: 40  SPAADELARLLLSHHNPFHPAESTLQLLSGGGVSLSQSLLVQILLRLRGASKLALSLLNS 99

Query: 126 --MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
             +  S   +   + D Y A++ +L +  +F A W L+ E   +     T+  F +L RR
Sbjct: 100 ARLHPSPSVSSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAA--TSRTFAVLARR 157

Query: 184 FASARMVKKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242
           + +A M ++A+   D+M  + G EPD   F  LLD LCK    K A ++F++ + +++P+
Sbjct: 158 YVAAGMTRQAVRAFDDMEAFVGREPDAGEFTTLLDTLCKYKYPKVATEVFNKRKYKYEPN 217

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD------ 296
            + +T L+YGWCK  +   ++  L  M D G EP++V YN LL+G  +   +        
Sbjct: 218 EKMYTILIYGWCKVNRNDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFDR 277

Query: 297 ----AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
               A +LLKEMR +G +P+  SY++++    R  K E     F  M+  G    V TYT
Sbjct: 278 TVRAAEDLLKEMRDRGIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYT 337

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           ++I       +++    +L  M   G+ P+  TY      +  ++++   +EL  +M+  
Sbjct: 338 SVIKCLASCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAP 397

Query: 413 G--CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
                PD+ +Y++++ +  KL +      +WN+M  +++ P  DS+ +++HGF       
Sbjct: 398 ASPTAPDIHSYHILLGMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWR 457

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           EAC++F EM+ +G L  PQ  T + L   L++A 
Sbjct: 458 EACQFFMEMIEKGFL--PQKITFEILYRGLIQAD 489



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 180/402 (44%), Gaps = 16/402 (3%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++DAL +      A +L  E       + R F  L   +   G   +A      M+ 
Sbjct: 117 YDAVVDALGRAHQFDAAWRLVVEAAADGAATSRTFAVLARRYVAAGMTRQAVRAFDDMEA 176

Query: 272 -AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
             G EPD   +  LL    +      A E+  + R+   +PN   YT+LI   C++ + +
Sbjct: 177 FVGREPDAGEFTTLLDTLCKYKYPKVATEVFNK-RKYKYEPNEKMYTILIYGWCKVNRND 235

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCK----------SRKIDRCYEILDSMIQRGIL 380
            + +   +M   G E +VVTY  L++G C+           R +    ++L  M  RGI 
Sbjct: 236 MSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFDRTVRAAEDLLKEMRDRGIE 295

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  +Y  ++  + +  + E C+ +   M+  G  P V+ Y  VI+     G L++A  +
Sbjct: 296 PDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAERL 355

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            +EM +  + P   ++      + G+  +I A E +K+M      +AP   +   LL   
Sbjct: 356 LHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPASPTAPDIHSYHILLGMF 415

Query: 501 LRAQKVEMAKDVWS--CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           ++  +     ++W+  C  T G +L+ Y  T+ IH    N   +EAC + ++M++   +P
Sbjct: 416 VKLNQHGTVTELWNDMCESTVGPDLDSY--TLLIHGFCENEKWREACQFFMEMIEKGFLP 473

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
           Q  TF  L RGL +    +    + ++V + AA+    +K+Y
Sbjct: 474 QKITFEILYRGLIQADMLRTWRRLKKRVDEEAAKFGDEYKLY 515


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 220/442 (49%), Gaps = 8/442 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  LI  LSK  +F     L+ EM K   + ++   +  L+  + +  M+ 
Sbjct: 267 PNDV----TYNVLINGLSKKGEFEQAKGLIGEMLKTGLK-VSAYTYNPLIYGYFNKGMLA 321

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLL 250
           +A+ + +EM   G  P    +   +  LCK   + +A  +L D +     P +  + +L+
Sbjct: 322 EALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLI 381

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           YG+C+ G L++A  +  +++     P IV YN LL G  + G++  A +L  EM  +G  
Sbjct: 382 YGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 441

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +YT+L+   C+M  +  A   F EM   G E D   Y T I G  K     R + +
Sbjct: 442 PDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSL 501

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + M+ +G  P+ + Y  ++    K   LEE  EL+ +M   G +PD   Y  +I    +
Sbjct: 502 QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G L++   ++ EM +  L+P   ++ V++HG  G+G L  A  YF EM  +G+L  P  
Sbjct: 562 NGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGIL--PNV 619

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +L+N L + ++++ A + ++ +V KG   N Y++TI I+   + G+ +EA S    
Sbjct: 620 ITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQ 679

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M+D  V P   T + L++ L K
Sbjct: 680 MLDRGVQPDSCTHSALLKQLGK 701



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/498 (25%), Positives = 230/498 (46%), Gaps = 31/498 (6%)

Query: 93  LALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR 152
           L+ Q   V++ P L  RV++    +  +  R + WA  QP +  S  V+ A+++ L++  
Sbjct: 70  LSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNN 129

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF-- 210
              + + +ME                    R  +A M  + ++VL      GC   E   
Sbjct: 130 LMRSAYWVME--------------------RVINANM-HRIVDVLIG----GCVSSEVSV 164

Query: 211 -VFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
            +   L+    K S V++   +FD+M + R  P +++   +L     +  + +A  V   
Sbjct: 165 KILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT 224

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M + G +P IV YN LL  Y + GK+    +LL EM+R+GC PN  +Y VLI  L +  +
Sbjct: 225 MGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
            E+A     EM ++G +    TY  LI G+     +     + + M+ +G  P   TY  
Sbjct: 285 FEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNS 344

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
            +    K   + + ++ + +M     +PDV +YN +I   C+LG L +A  +++E+ +  
Sbjct: 345 FIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 404

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L P   ++  ++ G   QG L  A +   EM+  G+  AP   T   L+N   +   + M
Sbjct: 405 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI--APDIVTYTILVNGSCKMGSLSM 462

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A++ +  ++ +G EL+ YA+   I      G    A S   +M+     P    +  ++ 
Sbjct: 463 AQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 522

Query: 569 GLKKLYNRQIAAEITEKV 586
           GL KL N + A+E+ +K+
Sbjct: 523 GLCKLGNLEEASELLQKM 540



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 202/444 (45%), Gaps = 49/444 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI             +L EEM  +   P + T   F+  + +    RM   A++ L 
Sbjct: 307 YNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLG--RM-SDAMQQLS 363

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEG 257
           +M      PD   +  L+   C+  ++ +A  LFDE+R  +  P++  + +LL G C++G
Sbjct: 364 DMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQG 423

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT---------------------- 295
           +L  A+ + V+M + G  PDIV Y  L++G  +MG ++                      
Sbjct: 424 ELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYA 483

Query: 296 -------------DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                         AF L +EM  KG  P+   Y V++  LC++  +EEA+    +M   
Sbjct: 484 TRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSD 543

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D VTYT++I    ++ ++ +  EI   M+ +G+ P+ +TY  ++  H  K  LE  
Sbjct: 544 GVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERA 603

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
                EM++ G +P+V  YN +I   CK+  + +A N + EM    + P   S+ ++++ 
Sbjct: 604 FIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINE 663

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G   EA   +K+M+ RG+   P   T  ALL  L +  K++      S + T   +
Sbjct: 664 NCNMGNWQEALSLYKQMLDRGV--QPDSCTHSALLKQLGKDCKLQAVHGT-STMPTAKVD 720

Query: 523 L---NVYAWTIW--IHSLFSNGHV 541
           L    V A T    + S+  NGH+
Sbjct: 721 LLSQTVGAATALTSVSSIAENGHI 744



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 128/270 (47%), Gaps = 10/270 (3%)

Query: 326 MEKMEEAN-RAFVEMERSGC---EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           ME++  AN    V++   GC   E  V     LI  + K   +++C  + D MI+  + P
Sbjct: 138 MERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSP 197

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           +      I+     K+ + + VE+   M + G  P +  YN ++   CK G++++ +++ 
Sbjct: 198 DVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLL 257

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTL-KALLNS 499
           +EM+    +P   ++ V+++G   +G   +A     EM+  GL +SA  Y  L     N 
Sbjct: 258 SEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNK 317

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            + A+ + + ++    +V KG    V  +  +I+ L   G + +A     DM+  +++P 
Sbjct: 318 GMLAEALSLQEE----MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPD 373

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             ++  L+ G  +L N   A  + +++R +
Sbjct: 374 VVSYNTLIYGYCRLGNLMKAFLLFDELRSI 403


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 191/401 (47%), Gaps = 7/401 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS- 149
           LE  L   G+ L   L   V+ R        +R++MWA  Q NY H    Y  +I  L+ 
Sbjct: 16  LEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILTS 75

Query: 150 ---KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
              K R+F  V  +++ M++    ++  EV + ++R +    + +       +  +   +
Sbjct: 76  TKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNYTEKYLTRVQKFAKKKRIRVKTQ 135

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           P+   F  LLDALCK    ++A  LF  ++ + KP    +  + +GWC+         VL
Sbjct: 136 PEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGMKVL 195

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC---DPNANSYTVLIQAL 323
            +M   G  PD   Y   +  + + G + +A EL + MR KG     P A +Y ++I AL
Sbjct: 196 EEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGAL 255

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            R  +M+E  +   +M  SGC  DV T+  LI G C + KID  Y  L  M  +G  P+ 
Sbjct: 256 VRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDI 315

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +TY   +    + +  EE + L   M + GC P V  +N++I +  ++G+   A   W E
Sbjct: 316 VTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETWYE 375

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           M+    +   D+++VM+ G  G   + +AC   +++V +G+
Sbjct: 376 MDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGM 416



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 135/316 (42%), Gaps = 6/316 (1%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+I  +N LL    +     DA  L K ++ K   P+AN+Y V+    CR+       +
Sbjct: 135 QPEINAFNLLLDALCKCCLAEDAEGLFKRVKNK-VKPDANTYNVMFFGWCRVRNPTRGMK 193

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIML 391
              EM + G   D  TY T I  FC++  ++   E+ + M  +G     P   TY  ++ 
Sbjct: 194 VLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIG 253

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  +   ++EC +L+ +M   GC+PDVS +  +I   C  G++ EA     EM      P
Sbjct: 254 ALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPP 313

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++   +          EA   ++ M+  G    P   T   L++        + A +
Sbjct: 314 DIVTYNCFLKVLCENKNSEEALRLYERMIEAGCF--PSVQTHNMLISMFFEMGDPDGAFE 371

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
            W  +  +GC  +V  + + I  LF    V++AC    D+++  +      F   +  L 
Sbjct: 372 TWYEMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLS 431

Query: 572 KLYNRQIAAEITEKVR 587
            + N +    ++E +R
Sbjct: 432 VIGNIRAIHRLSEHMR 447


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 244/468 (52%), Gaps = 16/468 (3%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILM 181
           Y M +      V+++ V   ++K+L  + +  +  AL+++M +    P  I   V+  L+
Sbjct: 224 YEMLSKGISPTVYTFGV---VMKALCLVNEVDSACALLKDMTRHGCVPNAI---VYQTLI 277

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FK 240
              +    V + +++L+EM   GC PD   F   +  LCK   + EAAKL D M  R F 
Sbjct: 278 HALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFT 337

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P+   +  L++G C+ GK+ EA+ +L ++ +    P++V++N L++GY   G++ +A  +
Sbjct: 338 PNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAV 393

Query: 301 LKE-MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           + E M   GC P+  +Y  LI  LC+   +  A     EM+  GCE +V+TYT LI  FC
Sbjct: 394 MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 453

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  +++    +LD M  +G+  N + Y  ++ A  K E++++ + + G+M   GC PD+ 
Sbjct: 454 KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 513

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N +I   CK+ + +EA+ ++ +M    +   T ++  ++H FL +G + EA +   +M
Sbjct: 514 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 573

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           + RG        T   L+ +L RA  +E    ++  +++KG   N  +  I I+ L   G
Sbjct: 574 LFRG--CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 631

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +++ A  +  DM+   + P   T+  L+ GL K    Q A  + +K++
Sbjct: 632 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQ 679



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 219/450 (48%), Gaps = 12/450 (2%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA  Q  Y H +DVY  LI  L    +F    AL+ +M++E   +    +F+++M+ +
Sbjct: 116 FQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEG-IVFRESLFILIMKHY 174

Query: 185 ASARMVKKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
             A +  +A  +L +M   Y CEP    +  +LD L   +  K    +F EM  +   P+
Sbjct: 175 GRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPT 234

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  F  ++   C   ++  A  +L  M   G  P+ +VY  L+   +++G++ +  +LL+
Sbjct: 235 VYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLE 294

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   GC P+ N++   I  LC+M ++ EA +    M   G   +  TY  L+ G C+  
Sbjct: 295 EMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMG 354

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE-MRKIGCVPDVSNY 421
           K+D    +L+ +      PN + +  ++  +  +  L+E   +M E M  +GC PD+  Y
Sbjct: 355 KVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 410

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   CK G L  A  + NEM+     P   ++ +++  F  +G L EA     EM G
Sbjct: 411 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 470

Query: 482 RGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           +GL L+A  Y     L+++L + +KV+ A +++  + +KGC+ +++ +   I  L     
Sbjct: 471 KGLALNAVGY---NCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 527

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +EA     DM+   V+    T+  L+   
Sbjct: 528 FEEALGLYQDMLLEGVIANTITYNTLIHAF 557



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 218/450 (48%), Gaps = 49/450 (10%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN +    VY+ LI +LSK+ +   V  L+EEM      P + T   F   +        
Sbjct: 268 PNAI----VYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNT---FNDAIHGLCKMLR 320

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-------------- 235
           + +A +++D M   G  P+ F +G L+  LC+   V EA  L +++              
Sbjct: 321 IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLING 380

Query: 236 ---RERFK----------------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
              R R                  P +  + +L+ G CK+G LV A+ ++ +M+  G EP
Sbjct: 381 YVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEP 440

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           +++ Y  L+  + + G++ +A  +L EM  KG   NA  Y  LI ALC+ EK+++A   F
Sbjct: 441 NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 500

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +M   GC+ D+ T+ +LI G CK  K +    +   M+  G++ N +TY  ++ A  ++
Sbjct: 501 GDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRR 560

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             ++E ++L+ +M   GC  D   YN +I+  C+ G +++ + ++ +M +  L+P   S 
Sbjct: 561 GAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC 620

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            ++++G    G +  A E+ ++M+ RGL   P   T  +L+N L +  + + A +++  +
Sbjct: 621 NILINGLCRTGNIQHALEFLRDMIHRGL--TPDIVTYNSLINGLCKTGRAQEALNLFDKL 678

Query: 517 VTKGCELNVYAWTIWI-----HSLFSNGHV 541
             +G   +   +   I       +F + H+
Sbjct: 679 QVEGICPDAITYNTLISWHCKEGMFDDAHL 708



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 192/401 (47%), Gaps = 9/401 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE- 199
           Y  L+  L +M K      L+ ++    P ++   +F  L+  + S   + +A  V+ E 
Sbjct: 343 YGVLMHGLCRMGKVDEARMLLNKV--PNPNVV---LFNTLINGYVSRGRLDEAKAVMHES 397

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   GC PD F +  L+  LCK   +  A +L +EM+ +  +P++  +T L+  +CKEG+
Sbjct: 398 MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 457

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA+ VL +M   G   + V YN L+S   +  K+ DA  +  +M  KGC P+  ++  
Sbjct: 458 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 517

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC++ K EEA   + +M   G  A+ +TY TLI  F +   +    ++++ M+ RG
Sbjct: 518 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 577

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              + +TY  ++ A  +   +E+ + L  +M   G  P+  + N++I   C+ G ++ A+
Sbjct: 578 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 637

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
               +M    L+P   ++  +++G    G   EA   F ++   G+   P   T   L++
Sbjct: 638 EFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI--CPDAITYNTLIS 695

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              +    + A  + S  V  G   N   W I + +    G
Sbjct: 696 WHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 149/331 (45%), Gaps = 41/331 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K     +   LM EM+ +  +P +IT   + IL+ RF     +++A  VLD
Sbjct: 410 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVIT---YTILIDRFCKEGRLEEARNVLD 466

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G   +   + CL+ ALCK+  V++A  +F +M  +  KP +  F SL++G CK  
Sbjct: 467 EMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVN 526

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-------- 309
           K  EA  +   M   G   + + YN L+  + + G M +A +L+ +M  +GC        
Sbjct: 527 KFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYN 586

Query: 310 ---------------------------DPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                                      +PN  S  +LI  LCR   ++ A     +M   
Sbjct: 587 GLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHR 646

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D+VTY +LI+G CK+ +      + D +   GI P+ +TY  ++  H K+   ++ 
Sbjct: 647 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 706

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
             L+      G +P+   + +++    K G+
Sbjct: 707 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 737



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-SLSPGTDSFVVMVHGF 463
           L+ +M++ G V   S + ++++   + G   +A  +  +M    S  P   S+ V++   
Sbjct: 151 LLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVL 210

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           L   C       F EM+ +G+  +P   T   ++ +L    +V+ A  +   +   GC  
Sbjct: 211 LAGNCPKVVPNVFYEMLSKGI--SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVP 268

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           N   +   IH+L   G V E      +M+    +P  +TF   + GL K+     AA++ 
Sbjct: 269 NAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLV 328

Query: 584 EKV 586
           +++
Sbjct: 329 DRM 331


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 203/430 (47%), Gaps = 7/430 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V  + R+L  F  R   L  AL+      +P     V+ RC        R++++A + P 
Sbjct: 58  VGSLCRVLSDFRGRGQDLPAALRGFAPGFQPRDAAAVLRRCRHLPLPSLRFFLFAGELPG 117

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + H  D    L  SL+  R F  + +L+ ++    P  ++  +F +L R ++ AR+ + A
Sbjct: 118 FSHHPDSLLVLANSLAGARLFPLLRSLLSDL---PPSALSRGLFPLLFRAYSRARLPEDA 174

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I     M  +G  P    F  LL AL +N  V+   + F E   +F  S + +T L+ GW
Sbjct: 175 IRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESTAQFDVSAKAYTILISGW 234

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPN 312
               K   A+ +  +M   G E D+ VYN L+    + G +T A E L  M++  G  PN
Sbjct: 235 AVVKKPENARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPN 294

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +Y   + A C  + +  A R    M       +V TY  +I   C   +I+  Y ILD
Sbjct: 295 AATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILD 354

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            +  +G  P+  +Y  ++ AH K +E+ + + L+  M K  C PD  +YN+++++   +G
Sbjct: 355 EITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLISVG 414

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG-QGCLIEACEYFKEMVGRGLLSAPQYG 491
               A+ VW+ ME     PG  ++ VM+HG    +G   +AC YF  MV  G+   P   
Sbjct: 415 RFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGI--PPYQA 472

Query: 492 TLKALLNSLL 501
           T + L + LL
Sbjct: 473 TCEVLRDRLL 482



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 173/400 (43%), Gaps = 24/400 (6%)

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---RFKPSL--RHFTSLLYGW 253
           E+P +   PD  +   L ++L         A+LF  +R       PS   R    LL+  
Sbjct: 114 ELPGFSHHPDSLL--VLANSLA-------GARLFPLLRSLLSDLPPSALSRGLFPLLFRA 164

Query: 254 CKEGKLVE-AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
               +L E A      M   GF P I  +++LL   ++ G +       +E   +  D +
Sbjct: 165 YSRARLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESTAQ-FDVS 223

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +YT+LI     ++K E A   F EM + G E DV  Y  LI   C+   I    E L 
Sbjct: 224 AKAYTILISGWAVVKKPENARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQEQLS 283

Query: 373 SMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           +M +  G++PN  TY   + A    +++   + ++  M      P+V  YN VIRL C L
Sbjct: 284 NMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDL 343

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR--GLLSAPQ 489
           GE+ EA N+ +E+      P   S+  +++      C ++       ++ R    L  P 
Sbjct: 344 GEINEAYNILDEITTQGEKPDVWSYNTLLNAH----CKLKEVNKALRLISRMDKELCPPD 399

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHVKEACSYC 548
             +   LL  L+   + + A +VW  +  +G       + + IH L S  G  ++ACSY 
Sbjct: 400 RHSYNMLLKMLISVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYF 459

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           + M+D  + P   T   L   L  L  R     +T+++R+
Sbjct: 460 VRMVDEGIPPYQATCEVLRDRLLMLGLRDQLGVLTDRMRR 499


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 222/452 (49%), Gaps = 14/452 (3%)

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           LI     + K     A++ EM  R   P  +T   F  L++       + +A  +L +M 
Sbjct: 133 LINCYCNLNKVDFGLAVLGEMLRRGHSPNTVT---FTSLVKGLCLGSRISEATGLLRKMV 189

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-------RFKPSLRHFTSLLYGWC 254
           + G  P+   +G LL+ LC   +   A KL +EM           KP+L  + +++   C
Sbjct: 190 RMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLC 249

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K+G + + K + ++MK  G  PD+V Y++++ G    G+   A  L  EM  +G  PN  
Sbjct: 250 KDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVV 309

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++ VLI ALC+  KMEEAN     M + G   D  TY TLI GFC   +ID   ++  SM
Sbjct: 310 TFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM 369

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             +GI  + ++Y  ++  + K   + E  +L  EM     +P V  YN ++    + G++
Sbjct: 370 ESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKV 429

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           ++A N++ EM+   L+P + ++ +++ G      L EA E F  +        P      
Sbjct: 430 RDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDF--QPSIQIFN 487

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L++ L +A+K+E+A+++++ +  +G E NV  +T+ IH L  +G ++ A    L M + 
Sbjct: 488 CLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEK 547

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              P   TF  LMRG  +    Q   E+ +++
Sbjct: 548 GCAPNLVTFNTLMRGFCQNDEMQKVVELLQEM 579



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 158/323 (48%), Gaps = 6/323 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I  +    ++     L  EM  E   P ++T   F +L+     A  +++A  +L 
Sbjct: 276 YSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVT---FNVLIDALCKAGKMEEANHLLK 332

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G  PD F +  L+D  C    + +A  LF  M  +  +     +  L+ G+CK G
Sbjct: 333 LMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSG 392

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++VEAK +  +M      P ++ YN LL+G  + GK+ DA+ L  EM+     P + +Y 
Sbjct: 393 RMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYN 452

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+  LC+   + EA   F  +E    +  +  +  LI G CK+RKI+   E+ + +   
Sbjct: 453 ILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHE 512

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  ++    K  +LE   +L   M + GC P++  +N ++R  C+  E+++ 
Sbjct: 513 GLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKV 572

Query: 438 VNVWNEMEAASLSPGTDSFVVMV 460
           V +  EM     SP   +  ++V
Sbjct: 573 VELLQEMAEKDFSPDASTISIVV 595



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 176/373 (47%), Gaps = 11/373 (2%)

Query: 207 PDEFVFGCLLDALCKNSSVK--EAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAK 263
           PD       L + CK+  +K  EA  +F+ + + +  P +  F +LL    K  +  +  
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +  +M   G  PD +  N L++ Y  + K+     +L EM R+G  PN  ++T L++ L
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGL 172

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG----- 378
           C   ++ EA     +M R G   +VVTY TL++G C +       ++ + M+        
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGV 232

Query: 379 -ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN + Y  I+ +  K   +++  EL  EM+  G  PDV  Y+ +I   C  G  + A
Sbjct: 233 TIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGA 292

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++NEM    + P   +F V++      G + EA    K M+ RG   +P   T   L+
Sbjct: 293 KGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRG--ESPDTFTYNTLI 350

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +      +++ A+D++  + +KG E +  ++ + I+    +G + EA     +MM  ++M
Sbjct: 351 DGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIM 410

Query: 558 PQPDTFAKLMRGL 570
           P   T+  L+ GL
Sbjct: 411 PTVITYNTLLTGL 423



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 45/314 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     +  LI +L K  K      L++ M  R E P   T   +  L+  F    
Sbjct: 305 HPNVV----TFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFT---YNTLIDGFCLEG 357

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFT 247
            +  A ++   M   G E D   +  L++  CK+  + EA KL+ EM  +   P++  + 
Sbjct: 358 RIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYN 417

Query: 248 SLLYGWCKEGKLVEAKYVLVQMK-----------------------------------DA 272
           +LL G  +EGK+ +A  +  +MK                                   + 
Sbjct: 418 TLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENH 477

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
            F+P I ++N L+ G  +  K+  A EL   +  +G +PN  +YTV+I  LC+  ++E A
Sbjct: 478 DFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENA 537

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
              F+ ME  GC  ++VT+ TL+ GFC++ ++ +  E+L  M ++   P+  T   ++  
Sbjct: 538 KDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDL 597

Query: 393 HEKKEELEECVELM 406
             K E+  E + L+
Sbjct: 598 LSKDEKYREYLHLL 611



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 6/241 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    K  +      L  EM  ++  P +IT    +  + R      V+ A  +  
Sbjct: 381 YNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGK---VRDAWNLFG 437

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM  +   P+   +  LLD LCKN+ + EA +LF  +    F+PS++ F  L+ G CK  
Sbjct: 438 EMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKAR 497

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+  A+ +  ++   G EP+++ Y  ++ G  + G++ +A +L   M  KGC PN  ++ 
Sbjct: 498 KIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFN 557

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L++  C+ ++M++      EM       D  T + ++    K  K      +L +   +
Sbjct: 558 TLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQ 617

Query: 378 G 378
           G
Sbjct: 618 G 618



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 4/185 (2%)

Query: 416 PDVSNYNVVIRLACKLGELK--EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           PD       ++  CK G +K  EA +V+N +     +P   SF  ++          +  
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             +K M   GL  AP + TL  L+N      KV+    V   ++ +G   N   +T  + 
Sbjct: 113 SLYKRMSLIGL--APDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVK 170

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593
            L     + EA      M+     P   T+  L+ GL    N  +A ++ E++       
Sbjct: 171 GLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGF 230

Query: 594 QITFK 598
            +T K
Sbjct: 231 GVTIK 235


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 223/454 (49%), Gaps = 7/454 (1%)

Query: 145 IKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           I+ L +  +     AL+E M     P ++T   +  LMR       V++A + L  M   
Sbjct: 253 IRGLCEDGRLEEAVALVERMGAYVAPDVVT---YNTLMRGLCKDSKVQEAAQYLGRMMNQ 309

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           GC PD+F +  ++D  CK+  ++EA +L  D + + F P    + SL+ G C EG +  A
Sbjct: 310 GCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERA 369

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +  + +    +PD+VVYN+L+ G  + G +  A +++ EM  +GC P+  +Y ++I  
Sbjct: 370 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIING 429

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+M  + +A     +    G   DV T+ TLI G+CK  K+D   ++++ M   GI P+
Sbjct: 430 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD 489

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++    K  + +E  E   EM   GC P+   YN++I   CK+ +L+EA  V  
Sbjct: 490 VITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 549

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M    L P   SF  ++HGF   G L  A   F+++  +G  +     T   L+ +   
Sbjct: 550 RMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TFNILIGAYSS 607

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
              ++MA+ ++  +++KG + ++Y + I +  L    +V  A ++  +M+    +P   T
Sbjct: 608 KLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMAT 667

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           F +++  L   +    A  I   + +M    ++ 
Sbjct: 668 FGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEVV 701



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 12/343 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP L+   V+  L++      ++  A++V++EM + GC PD + +  +++ LCK  ++ +
Sbjct: 382 KPDLV---VYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISD 438

Query: 228 AAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           AA +  D + + + P +  F +L+ G+CK  KL  A  ++ +M   G  PD++ YN++L+
Sbjct: 439 AAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLN 498

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  + GK  +  E  +EM  KGC PNA +Y +LI+  C++ ++EEA+   V M + G   
Sbjct: 499 GLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVP 558

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D V++ TLI GFC++  +D  Y +   + ++G      T+  ++ A+  K  ++   ++ 
Sbjct: 559 DAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIF 618

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
           GEM   G  PD+  Y +++   CK   +  A     EM +    P   +F  M++     
Sbjct: 619 GEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMN 678

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
             + EA      MV        + G +  +++++L   K E+A
Sbjct: 679 HRVSEAVAIIHIMV--------RMGVVPEVVDTILSTDKKEIA 713



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 166/375 (44%), Gaps = 37/375 (9%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255
           +L ++ K G   ++F     +  LC++  ++EA  L + M     P +  + +L+ G CK
Sbjct: 233 LLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCK 292

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + K+ EA   L +M + G  PD   YN ++ GY + G + +A ELLK+   KG  P+  +
Sbjct: 293 DSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVT 352

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI  LC    +E A   F E +    + D+V Y +L+ G C+   I    ++++ M+
Sbjct: 353 YCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMV 412

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           +                                    GC PD+  YN++I   CK+G + 
Sbjct: 413 EE-----------------------------------GCHPDIWTYNIIINGLCKMGNIS 437

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  V N+       P   +F  ++ G+  +  L  A +  + M   G+  AP   T  +
Sbjct: 438 DAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGI--APDVITYNS 495

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +LN L +A K +   + +  ++ KGC  N   + I I +      ++EA    + M    
Sbjct: 496 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDG 555

Query: 556 VMPQPDTFAKLMRGL 570
           ++P   +F  L+ G 
Sbjct: 556 LVPDAVSFNTLIHGF 570



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 195/447 (43%), Gaps = 4/447 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YRALI+ L    +   V A +   R          ++V  ++ +A A  ++ A++  + M
Sbjct: 38  YRALIRELVSAGRLDDVDAALASARSHLAPDSLQPLYVASIQAYARAGRLRAAVDAFERM 97

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
             + C P    +  ++DAL   +   +A K++  M      P  R  T  L  +C  G+ 
Sbjct: 98  DLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRP 157

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L  + + G +     Y  ++ G    G   +A  L  EM  +   P+  ++  +
Sbjct: 158 HVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNV 217

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+   + E+     ++ + G  A+  T    I G C+  +++    +++ M    +
Sbjct: 218 LHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERM-GAYV 276

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  +M    K  +++E  + +G M   GC+PD   YN +I   CK G L+EA  
Sbjct: 277 APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATE 336

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +       P   ++  +++G   +G +  A E F E   + L   P      +L+  
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDL--KPDLVVYNSLVKG 394

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L R   +  A  V + +V +GC  +++ + I I+ L   G++ +A     D +    +P 
Sbjct: 395 LCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPD 454

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             TF  L+ G  K      A ++ E++
Sbjct: 455 VFTFNTLIDGYCKRLKLDSALQLVERM 481


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 197/408 (48%), Gaps = 3/408 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            + IL+R F S   ++K +    EM + GC P+   +  L+DA CK   + EA  L   M
Sbjct: 12  TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM 71

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
             +  +P+L  +  ++ G C+EG + EA  +L +M   GF PD V YN LL+GY + G  
Sbjct: 72  SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 131

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  +  EM R G  P+  +YT LI ++C+   +  A   F +M   G   +  TYTTL
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I GF +   ++  Y IL+ M + G  P+ +TY   +  H   E +EE + ++ EM + G 
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 251

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PDV +Y+ +I   C+ GEL  A  +  EM    +SP   ++  ++ G      L EAC+
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM+  GL   P   T   L+N+      +  A  +   ++ KG   +   +++ I+ 
Sbjct: 312 LSQEMLDMGL--PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLING 369

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           L      +EA      ++  + +P   T+  L+     +  + + A I
Sbjct: 370 LNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALI 417



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 194/404 (48%), Gaps = 26/404 (6%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+    K   F     +  EM +    P ++T   +  L+     AR + +A+E  
Sbjct: 117 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVT---YTALINSMCKARNLNRAMEFF 173

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           D+M   G  P+E  +  L+D   +   + EA ++ +EM E  F PS+  + + ++G C  
Sbjct: 174 DQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVL 233

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ EA  V+ +M + G  PD+V Y+ ++SG+ + G++  AF++ +EM  KG  P+A +Y
Sbjct: 234 ERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY 293

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LIQ LC M ++ EA     EM   G   D  TYTTLI+ +C    +++   + D MI 
Sbjct: 294 SSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH 353

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV------------- 423
           +G LP+ +TY  ++    K+    E   L+ ++     VP    Y+              
Sbjct: 354 KGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSV 413

Query: 424 --VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
             +I+  C  G + EA  V+  M   +  PG   + V++HG    G L +A   +KEM+ 
Sbjct: 414 VALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIH 473

Query: 482 RGLLSAPQYGTLKALLNSLLR-AQKVEMAKDVWSCIVTKGCELN 524
            G +  P   T+  L+ +L +     EM++ +   +  + C LN
Sbjct: 474 SGFV--PHTVTVITLIKALFKEGMNEEMSEVIGDTL--RSCRLN 513



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 176/373 (47%), Gaps = 37/373 (9%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +R R  P++  +  L+ G+C  G+L +      +M+  G  P++V YN L+  Y +MG++
Sbjct: 2   IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 61

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +AF LLK M  KG  PN  SY V+I  LCR   M+EA     EM   G   D VTY TL
Sbjct: 62  DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTL 121

Query: 355 ISGF-----------------------------------CKSRKIDRCYEILDSMIQRGI 379
           ++G+                                   CK+R ++R  E  D M  RG+
Sbjct: 122 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN+ TY  ++    ++  L E   ++ EM + G  P V  YN  I   C L  ++EA+ 
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V  EM    L+P   S+  ++ GF  +G L  A +  +EMV +G+  +P   T  +L+  
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV--SPDAVTYSSLIQG 299

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L   +++  A D+   ++  G   + + +T  I++    G + +A     +M+    +P 
Sbjct: 300 LCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPD 359

Query: 560 PDTFAKLMRGLKK 572
             T++ L+ GL K
Sbjct: 360 AVTYSVLINGLNK 372



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 146/322 (45%), Gaps = 37/322 (11%)

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M R    PN  +Y +LI+  C + ++++    F EMER+GC  +VVTY TLI  +CK  +
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           ID  + +L SM  +G+ PN ++Y  I+    ++  ++E  E++ EM   G  PD   YN 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 424 VIRLACKLGELKEAVNV-----------------------------------WNEMEAAS 448
           ++   CK G   +A+ +                                   +++M    
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L P   ++  ++ GF  QG L EA     EM   G   +P   T  A ++     +++E 
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF--SPSVVTYNAFIHGHCVLERMEE 238

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  V   +V KG   +V +++  I      G +  A     +M++  V P   T++ L++
Sbjct: 239 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 298

Query: 569 GLKKLYNRQIAAEITEKVRKMA 590
           GL ++     A ++++++  M 
Sbjct: 299 GLCEMRRLTEACDLSQEMLDMG 320



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 153/377 (40%), Gaps = 71/377 (18%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFV----ILMRRFASARMVKKA 193
            Y  LI   S+       + ++ EM +    P ++T   F+    +L R       +++A
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER-------MEEA 239

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           + V+ EM + G  PD   +  ++   C+   +  A ++  EM E+   P    ++SL+ G
Sbjct: 240 LGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQG 299

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            C+  +L EA  +  +M D G  PD   Y  L++ Y   G +  A  L  EM  KG  P+
Sbjct: 300 LCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPD 359

Query: 313 ANSYTVLIQAL------------------------------------------------- 323
           A +Y+VLI  L                                                 
Sbjct: 360 AVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKG 419

Query: 324 -CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            C    M EA+R F  M     +     Y  +I G C+   + + + +   MI  G +P+
Sbjct: 420 FCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPH 479

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV-- 440
            +T + ++ A  K+   EE  E++G+  +   + +     V++ +  K G ++  +NV  
Sbjct: 480 TVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVSR 539

Query: 441 -WNEME----AASLSPG 452
            +N++     A+S+ PG
Sbjct: 540 LYNKLSLKCVASSVPPG 556


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 228/454 (50%), Gaps = 12/454 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK---PQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  ++  L K R     + +++EMR  K   P L+T   +  ++  F     + +A E+L
Sbjct: 44  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVT---YSTVINGFCKQGEMDRACEIL 100

Query: 198 DEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
            EM  + G  PD   +  ++D LC++  +  A ++  EM+ +  +P    F++L+ GWC 
Sbjct: 101 REMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCN 160

Query: 256 EGKLVEAKYVLVQ-MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             K+ EA  +  + +  + ++PD+V Y  L+ G+ + G +  A ++L  M  + C PN  
Sbjct: 161 ARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV 220

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y+ L+  LC+   +++A   F  M   GC  +VVTYTTLI G C + K+D    ++D M
Sbjct: 221 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM 280

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
                 P+ ++Y  ++  + +   +EE  +L  EM    C+PD   Y  ++R  C    L
Sbjct: 281 TATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRL 340

Query: 435 KEAVNVWNEME-AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +EA  +   M+ AA + P   ++ ++V G+      +EA E+ +EM+ R +  AP   T 
Sbjct: 341 EEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNV--APNAVTY 398

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            +L++ L +A +V+ A +V   +V K  E +V  +   I +L   G + EA    + M  
Sbjct: 399 SSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA 458

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             + P   T+  L+ G  +    +IA E+ E +R
Sbjct: 459 HGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMR 492



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 216/410 (52%), Gaps = 11/410 (2%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   + I++  F  A  +K+A+   ++M ++   P+E  +  +++ LCK     +
Sbjct: 4   QPTVVT---WTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSK 59

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNL 284
           A ++  EMR+     P L  +++++ G+CK+G++  A  +L +M    G  PD+V Y ++
Sbjct: 60  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSV 119

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE-MERSG 343
           + G  + GKM  A E+++EM+ KG +P+  +++ LI   C   K++EA + + E +  S 
Sbjct: 120 VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS 179

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + DVVTYT LI GFCKS  +++  ++L  M  R  +PN +TY  ++    K  +L++ +
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 239

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +L   M   GCVP+V  Y  +I   C   ++  A  + +EM A    P T S+  ++ G+
Sbjct: 240 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGY 299

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT-KGCE 522
              G + EA + FKEM  +  L  P   T   L+     A ++E A+ +   + T  G +
Sbjct: 300 CRLGRIEEAKQLFKEMATKSCL--PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 357

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +V  ++I +          EA  +  +M+  +V P   T++ L+ GL K
Sbjct: 358 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 407



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 198/413 (47%), Gaps = 16/413 (3%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSL 249
           +A E++ EM   G EPD+F F  L+   C    V EA KL+ E+     +KP +  +T+L
Sbjct: 131 RACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTAL 190

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+CK G L +A  +L  M+     P++V Y++LL G  + G +  A +L + M  KGC
Sbjct: 191 IDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGC 250

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +YT LI  LC   K++ A     EM  + C  D V+Y  L+ G+C+  +I+   +
Sbjct: 251 VPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQ 310

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLA 428
           +   M  +  LP+++TY  ++        LEE   L+  M+   G  PDV  Y++V+   
Sbjct: 311 LFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGY 370

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            +     EA     EM A +++P   ++  ++ G    G +  A E  K MV + +   P
Sbjct: 371 SRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRV--EP 428

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
             GT  +++ +L R   ++ A  +   +   G E  +  +T  +      G ++ A    
Sbjct: 429 SVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL- 487

Query: 549 LDMM---------DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            ++M          A+++P+   F+ L+RGL K      A  + E++R    E
Sbjct: 488 FEVMRKKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECE 539



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 198/399 (49%), Gaps = 9/399 (2%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKY 264
           C+P    +  ++D  CK + +K+A   F++MRE   P+ R +  ++ G CK     +A  
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 265 VLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-RRKGCDPNANSYTVLIQA 322
           VL +M+D     PD+V Y+ +++G+ + G+M  A E+L+EM  R G  P+  +YT ++  
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL-P 381
           LCR  KM+ A     EM+  G E D  T++ LI+G+C +RK+D   ++   ++      P
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + +TY  ++    K   LE+ ++++G M    CVP+V  Y+ ++   CK G+L +A++++
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 242

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
             M +    P   ++  ++HG      +  A     EM        P   +  ALL+   
Sbjct: 243 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT--CCPPDTVSYNALLDGYC 300

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           R  ++E AK ++  + TK C  +   +T  +   F N    E   + L+ M       PD
Sbjct: 301 RLGRIEEAKQLFKEMATKSCLPDRITYTCLVRG-FCNASRLEEARFLLENMKTAAGIDPD 359

Query: 562 --TFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITF 597
             T++ ++ G  +      AAE I E + +  A   +T+
Sbjct: 360 VVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTY 398



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 202/415 (48%), Gaps = 15/415 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           + ALI      RK      L +E+      KP ++T   +  L+  F  +  ++KA+++L
Sbjct: 151 FSALITGWCNARKVDEALKLYKEILTSSSWKPDVVT---YTALIDGFCKSGNLEKAMKML 207

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
             M    C P+   +  LL  LCK   + +A  LF  M  +   P++  +T+L++G C  
Sbjct: 208 GVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAA 267

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            K+  A+ ++ +M      PD V YN LL GY ++G++ +A +L KEM  K C P+  +Y
Sbjct: 268 HKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITY 327

Query: 317 TVLIQALCRMEKMEEANRAFVEMER-SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           T L++  C   ++EEA      M+  +G + DVVTY+ +++G+ ++++     E +  MI
Sbjct: 328 TCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMI 387

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            R + PN +TY  ++    K   ++  +E++  M      P V  +N VI   C+LG++ 
Sbjct: 388 ARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMD 447

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS------APQ 489
           EA  +   M A  L PG  ++  ++ GF   G +  A E F+ M  +   S       P+
Sbjct: 448 EAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPE 507

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                AL+  L +A++++ A  V   + ++ CE         +  L   G  +EA
Sbjct: 508 QA-FSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEA 561



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 55/365 (15%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V     Y +L+  L K         L   M  +   P ++T   +  L+    +A  
Sbjct: 217 PNVV----TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVT---YTTLIHGLCAAHK 269

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V  A  ++DEM    C PD   +  LLD  C+   ++EA +LF EM  +   P    +T 
Sbjct: 270 VDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTC 329

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L+ G+C   +L EA+++L  MK A G +PD+V Y+ +++GY++  +  +A E ++EM  +
Sbjct: 330 LVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIAR 389

Query: 308 GCDPNANSYTVLIQ-----------------------------------ALCRMEKMEEA 332
              PNA +Y+ LI                                    ALCR+  M+EA
Sbjct: 390 NVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEA 449

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM--------IQRGILPNQL 384
            +  V M   G E  +VTYTTL+ GF ++ +++  YE+ + M            ++P Q 
Sbjct: 450 WKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQ- 508

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
            +  ++    K  E+++ + ++ E+R   C P   +   ++    + G  +EA  + N +
Sbjct: 509 AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSI 568

Query: 445 EAASL 449
               L
Sbjct: 569 SKVGL 573


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 214/435 (49%), Gaps = 8/435 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +L K +       ++  M K    P  +T   +  ++  + S+   K+AI  L 
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT---YNSILHGYCSSGQPKEAIGTLK 295

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G EP+   +  L++ LCKN    EA K+FD M +R  +P +  + +LL G+  +G
Sbjct: 296 KMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 355

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LVE   +L  M   G +PD  V+N L+  YA+  K+  A  +  +MR+ G +PN   Y 
Sbjct: 356 ALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYG 415

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+   +++A   F +M   G   +++ YT+LI G C   K D+  E++  M+ R
Sbjct: 416 TVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDR 475

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N + +  I+ +H K+  + E  +L   M +IG  PD+  YN +I   C  G++ EA
Sbjct: 476 GICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEA 535

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M +  + P   ++  +++G+     + +A   FKEMV  G+  +P   T   +L
Sbjct: 536 TKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV--SPNIITYNIIL 593

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L   ++   AK+++  I   G +L +  + I +H L  N    EA     ++   D+ 
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 558 PQPDTFAKLMRGLKK 572
            +  TF  ++  L K
Sbjct: 654 LETRTFNIMIGALLK 668



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 205/416 (49%), Gaps = 9/416 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR L++  +       + AL++ M +   Q     VF IL+  +A    V +A+ V  +M
Sbjct: 344 YRTLLQGYATKGALVEMHALLDLMVRNGIQ-PDHHVFNILICAYAKQEKVDQAMLVFSKM 402

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            ++G  P+   +G ++D LCK+ SV +A   F++M  E   P++  +TSL++G C   K 
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKW 462

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+ ++++M D G   + + +N+++  + + G++ ++ +L   M R G  P+  +Y  L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C   KM+EA +    M   G + D+VTY TLI+G+C+  ++D    +   M+  G+
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582

Query: 380 LPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            PN +TY  I+  L H ++    +  EL   + K G   ++S YN+++   CK     EA
Sbjct: 583 SPNIITYNIILQGLFHTRRTAAAK--ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEA 640

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + ++  +    L   T +F +M+   L  G + EA + F      GL+  P   T   + 
Sbjct: 641 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLV--PDVRTYSLMA 698

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            +L+    +E   D++  +   GC  +       +  L   G +  A +Y L M+D
Sbjct: 699 ENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTY-LFMID 753



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 190/394 (48%), Gaps = 6/394 (1%)

Query: 180 LMRRFASARMVKKAIEVLDEMPK---YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           L++        ++A+E+L  M      G  PD   +  +L+   K     +A   + EM 
Sbjct: 169 LLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEML 228

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +R   P +  ++S++   CK   + +A  VL  M   G  PD + YN++L GY   G+  
Sbjct: 229 DRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 288

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A   LK+MR  G +PN  +Y+ L+  LC+  +  EA + F  M + G E D+ TY TL+
Sbjct: 289 EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G+     +   + +LD M++ GI P+   +  ++ A+ K+E++++ + +  +MR+ G  
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+V  Y  VI + CK G + +A+  + +M    L+P    +  ++HG        +A E 
Sbjct: 409 PNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEEL 468

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + ++  +   I   
Sbjct: 469 ILEMLDRGICLNTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGC 526

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
              G + EA      M+   V P   T+  L+ G
Sbjct: 527 CLAGKMDEATKLLASMVSVGVKPDIVTYGTLING 560



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 178/369 (48%), Gaps = 7/369 (1%)

Query: 207 PDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA-KY 264
           P    +  L+   C+   +    A L + +++ F+     FT LL G C + +  +A   
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM---RRKGCDPNANSYTVLIQ 321
           VL +M + G  PD+  YNNLL G     +  +A ELL  M   R  G  P+  SY  ++ 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
              +    ++A   + EM   G   DVVTY+++I+  CK++ +D+  E+L++M++ G++P
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + +TY  I+  +    + +E +  + +MR  G  P+V  Y+ ++   CK G   EA  ++
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIF 329

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           + M    L P   ++  ++ G+  +G L+E       MV  G+   P +     L+ +  
Sbjct: 330 DSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI--QPDHHVFNILICAYA 387

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           + +KV+ A  V+S +   G   NV  +   I  L  +G V +A  Y   M+D  + P   
Sbjct: 388 KQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNII 447

Query: 562 TFAKLMRGL 570
            +  L+ GL
Sbjct: 448 VYTSLIHGL 456



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 43/341 (12%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD---PNANSYT 317
           +A++V  ++   G    I   N  L+  A+      A      M R G     P  ++Y 
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYA 96

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   CR  +++    A   + + G   D +T+T L+ G C  +   R  + +D +++R
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADK---RTSDAMDIVLRR 153

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
                                          M ++GC+PDV +YN +++  C     +EA
Sbjct: 154 -------------------------------MTELGCIPDVFSYNNLLKGLCDENRSQEA 182

Query: 438 VNVWNEM---EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           + + + M         P   S+  +++GF  +G   +A   + EM+ RG+L  P   T  
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGIL--PDVVTYS 240

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           +++ +L +AQ ++ A +V + +V  G   +   +   +H   S+G  KEA      M   
Sbjct: 241 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 300

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V P   T++ LM  L K      A +I + + K   E  I
Sbjct: 301 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDI 341


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 214/435 (49%), Gaps = 8/435 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +L K +       ++  M K    P  +T   +  ++  + S+   K+AI  L 
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT---YNSILHGYCSSGQPKEAIGTLK 295

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G EP+   +  L++ LCKN    EA K+FD M +R  +P +  + +LL G+  +G
Sbjct: 296 KMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 355

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LVE   +L  M   G +PD  V+N L+  YA+  K+  A  +  +MR+ G +PN   Y 
Sbjct: 356 ALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYG 415

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+   +++A   F +M   G   +++ YT+LI G C   K D+  E++  M+ R
Sbjct: 416 TVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDR 475

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N + +  I+ +H K+  + E  +L   M +IG  PD+  YN +I   C  G++ EA
Sbjct: 476 GICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEA 535

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M +  + P   ++  +++G+     + +A   FKEMV  G+  +P   T   +L
Sbjct: 536 TKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV--SPNIITYNIIL 593

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L   ++   AK+++  I   G +L +  + I +H L  N    EA     ++   D+ 
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 558 PQPDTFAKLMRGLKK 572
            +  TF  ++  L K
Sbjct: 654 LETRTFNIMIGALLK 668



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 205/416 (49%), Gaps = 9/416 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR L++  +       + AL++ M +   Q     VF IL+  +A    V +A+ V  +M
Sbjct: 344 YRTLLQGYATKGALVEMHALLDLMVRNGIQ-PDHHVFNILICAYAKQEKVDQAMLVFSKM 402

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            ++G  P+   +G ++D LCK+ SV +A   F++M  E   P++  +TSL++G C   K 
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKW 462

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+ ++++M D G   + + +N+++  + + G++ ++ +L   M R G  P+  +Y  L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C   KM+EA +    M   G + D+VTY TLI+G+C+  ++D    +   M+  G+
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582

Query: 380 LPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            PN +TY  I+  L H ++    +  EL   + K G   ++S YN+++   CK     EA
Sbjct: 583 SPNIITYNIILQGLFHTRRTAAAK--ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEA 640

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + ++  +    L   T +F +M+   L  G + EA + F      GL+  P   T   + 
Sbjct: 641 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLV--PDVRTYSLMA 698

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            +L+    +E   D++  +   GC  +       +  L   G +  A +Y L M+D
Sbjct: 699 ENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTY-LFMID 753



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 187/383 (48%), Gaps = 6/383 (1%)

Query: 191 KKAIEVLDEMPK---YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
           ++A+E+L  M      G  PD   +  +L+   K     +A   + EM +R   P +  +
Sbjct: 180 QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 239

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           +S++   CK   + +A  VL  M   G  PD + YN++L GY   G+  +A   LK+MR 
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 299

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G +PN  +Y+ L+  LC+  +  EA + F  M + G E D+ TY TL+ G+     +  
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 359

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            + +LD M++ GI P+   +  ++ A+ K+E++++ + +  +MR+ G  P+V  Y  VI 
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + CK G + +A+  + +M    L+P    +  ++HG        +A E   EM+ RG+  
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
              +    ++++S  +  +V  ++ ++  +V  G + ++  +   I      G + EA  
Sbjct: 480 NTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 547 YCLDMMDADVMPQPDTFAKLMRG 569
               M+   V P   T+  L+ G
Sbjct: 538 LLASMVSVGVKPDIVTYGTLING 560



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 178/369 (48%), Gaps = 7/369 (1%)

Query: 207 PDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA-KY 264
           P    +  L+   C+   +    A L + +++ F+     FT LL G C + +  +A   
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM---RRKGCDPNANSYTVLIQ 321
           VL +M + G  PD+  YNNLL G     +  +A ELL  M   R  G  P+  SY  ++ 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
              +    ++A   + EM   G   DVVTY+++I+  CK++ +D+  E+L++M++ G++P
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + +TY  I+  +    + +E +  + +MR  G  P+V  Y+ ++   CK G   EA  ++
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIF 329

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           + M    L P   ++  ++ G+  +G L+E       MV  G+   P +     L+ +  
Sbjct: 330 DSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI--QPDHHVFNILICAYA 387

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           + +KV+ A  V+S +   G   NV  +   I  L  +G V +A  Y   M+D  + P   
Sbjct: 388 KQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNII 447

Query: 562 TFAKLMRGL 570
            +  L+ GL
Sbjct: 448 VYTSLIHGL 456



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 43/341 (12%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD---PNANSYT 317
           +A++V  ++   G    I   N  L+  A+      A      M R G     P  ++Y 
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYA 96

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   CR  +++    A   + + G   D +T+T L+ G C  +   R  + +D +++R
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADK---RTSDAMDIVLRR 153

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
                                          M ++GC+PDV +YN +++  C     +EA
Sbjct: 154 -------------------------------MTELGCIPDVFSYNNLLKGLCDENRSQEA 182

Query: 438 VNVWNEM---EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           + + + M         P   S+  +++GF  +G   +A   + EM+ RG+L  P   T  
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGIL--PDVVTYS 240

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           +++ +L +AQ ++ A +V + +V  G   +   +   +H   S+G  KEA      M   
Sbjct: 241 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 300

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V P   T++ LM  L K      A +I + + K   E  I
Sbjct: 301 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDI 341


>gi|115475660|ref|NP_001061426.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|37806221|dbj|BAC99723.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|37806377|dbj|BAC99889.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623395|dbj|BAF23340.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|125602810|gb|EAZ42135.1| hypothetical protein OsJ_26694 [Oryza sativa Japonica Group]
          Length = 528

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 187/352 (53%), Gaps = 7/352 (1%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + +   I +  K R+F   WA++  M +    ++T+   VI+M R+A+A  V KAI+  D
Sbjct: 144 EAWHLTIWAAGKARRFDLAWAVVRRMLRRG--VLTSRAMVIVMERYAAANEVNKAIKTFD 201

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE-G 257
            M K+  E D+ VF  LL ALCKN ++++A +L    ++ F  +   F  +L GWC    
Sbjct: 202 AMEKFKTEADQTVFYSLLRALCKNKNIEDAEELLLVRKKFFPLTAEGFNIILDGWCNVIT 261

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EAK +  +M +    PD   Y  ++S +A++G + D   +  EM+++G  P+   Y 
Sbjct: 262 DIAEAKRIWREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYN 321

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  L +   M++    F  +   G + +V TY ++I   C+SRK+D    +L+ M+ +
Sbjct: 322 SLIYVLTKENCMKDVQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLK 381

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI+P  LTY H  L   ++E ++E ++ + +M+  GC P    + ++I    +L E   A
Sbjct: 382 GIVPTILTY-HTFL---RQENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHA 437

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           + +WNEM+   + P    ++ +V G +  GC+  A EY+ EM   G  S P+
Sbjct: 438 LKLWNEMKRYDIRPSYSHYMSVVQGLIKHGCMQRALEYYDEMKENGFASDPK 489



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 116/273 (42%), Gaps = 40/273 (14%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A+ +++ M R+G    + +  ++++      ++ +A + F  ME+   EAD   + +L+ 
Sbjct: 162 AWAVVRRMLRRGV-LTSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEADQTVFYSLLR 220

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             CK++ I+   E+L  ++++   P  LT                               
Sbjct: 221 ALCKNKNIEDAEELL--LVRKKFFP--LT------------------------------- 245

Query: 417 DVSNYNVVIRLACK-LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
               +N+++   C  + ++ EA  +W EM    ++P   S+ +MV  F   G L +    
Sbjct: 246 -AEGFNIILDGWCNVITDIAEAKRIWREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRV 304

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           + EM  RG    P      +L+  L +   ++  +++++ I+ +G + NV  +   I  L
Sbjct: 305 YDEMKKRGW--TPSIAVYNSLIYVLTKENCMKDVQNIFTRIIDEGLQPNVKTYNSMIVPL 362

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
             +  + EA     DMM   ++P   T+   +R
Sbjct: 363 CESRKLDEARMVLEDMMLKGIVPTILTYHTFLR 395


>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 213/438 (48%), Gaps = 7/438 (1%)

Query: 76  KIFRILKKFH-SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNY 134
           K+  +LK +  S   K+ELAL      +   L  +V+ R          ++ W SK    
Sbjct: 51  KVQNVLKNYRDSPTRKIELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKV 110

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           +     Y  ++  L KMR+F  +  +++ M K +  L+  E + +L+ R+A+A  V++AI
Sbjct: 111 LMGSGAYNEILDILGKMRRFDELSQVLDIMSK-REGLVNEETYRVLVNRYAAAHKVEEAI 169

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
           E+ +     G E D   F  LL  LC+   V+ A  L     + F   ++    +L GWC
Sbjct: 170 EIFNTRRDIGLEIDLVSFQNLLMFLCRYKHVQIAESLLYSKGKDFGMDIKTMNIVLNGWC 229

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             G + EAK     +  +  +PD+  Y   +    + GK+  A ++ + M  K C P+  
Sbjct: 230 VLGNVHEAKRFWKDIIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVV 289

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
               +I ALC   ++ EA   F EM + GC  +  TY +LI  F + R++++ YE+LD M
Sbjct: 290 ICNCIIDALCFKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEM 349

Query: 375 IQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
           + +    +P+ +T+ +++ A +K EEL   +E    M + GC+     YN+++RL     
Sbjct: 350 LDKKGSCMPDHITFNYLLKALKKPEELPLVLE---RMERNGCMISTDTYNLILRLYADWD 406

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
             +   + WNEME   L P   S+ +M+H    +G + +A  YF EM  +G++S P+   
Sbjct: 407 CEERVGDTWNEMEKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGMVSEPRTEM 466

Query: 493 LKALLNSLLRAQKVEMAK 510
           L + +N  L+    E  +
Sbjct: 467 LVSSMNMKLKDNDAEQGE 484


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 215/446 (48%), Gaps = 37/446 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  ++ S++K++++  V +L  +M     P  + T    +L+  F     V  A  VL +
Sbjct: 77  FAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYT--LNVLINSFCHLNRVNFAFSVLAK 134

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGK 258
           + K GC+PD   F  L+  LC    + EA  LFD+M  E F+P +  + +L+ G CK G 
Sbjct: 135 ILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGH 194

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +L  M+    +PD+VVY  L+    +  + T AF L  EM  KG  PN  +   
Sbjct: 195 TSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNS 254

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+ ALC + + +  N    EM  S    + ++ TT++   CK   + + ++++D M Q G
Sbjct: 255 LVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSG 314

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+ +TY  ++  H  + E++E V++   M   GC P+V +YN +I   CK+  + +A+
Sbjct: 315 VEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAM 374

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG--------------- 483
            ++ EM    L P T ++  ++HG    G L +A   F+EMV  G               
Sbjct: 375 YLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYL 434

Query: 484 -----------LLSA-------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
                      LL A       P       +++ + RA ++E A+D++S + +KG + NV
Sbjct: 435 CKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNV 494

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDM 551
           + + I  H L   G + EA    ++M
Sbjct: 495 WTYNIMTHGLCKRGLLDEATKLFMEM 520



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 198/428 (46%), Gaps = 13/428 (3%)

Query: 115 GDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLI 172
           G+A +L +   +W   QP+ V    +Y  LI  L K     A   L+  M K   +P ++
Sbjct: 161 GEALHL-FDKMIWEGFQPDVV----IYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVV 215

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
              V+  L+      R   +A  +  EM   G  P+      L+ ALC     K    L 
Sbjct: 216 ---VYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLL 272

Query: 233 DEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           +EM + +  P+    T+++   CKEG + +A  V+  M  +G EPD+V Y  L+ G+   
Sbjct: 273 NEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLR 332

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            +M +A ++   M  KGC PN  SY  LI   C++E+M++A   F EM R     + VTY
Sbjct: 333 SEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTY 392

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            TLI G C   ++     +   M+  G +P+ +TY  ++    K   L++ + L+  +  
Sbjct: 393 NTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEG 452

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
               PD+  Y +VI   C+ GEL++A ++++ + +  L P   ++ +M HG   +G L E
Sbjct: 453 SNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDE 512

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A + F EM       +    T   +    LR  +   A  +   ++ +G   +V   T+ 
Sbjct: 513 ATKLFMEMDENA--CSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLL 570

Query: 532 IHSLFSNG 539
           +  L  +G
Sbjct: 571 VGMLSDDG 578



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 167/374 (44%), Gaps = 6/374 (1%)

Query: 223 SSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           +++ +A   F+ M     P S+  F  +L    K  +      +  +M   G   ++   
Sbjct: 53  NTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTL 112

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L++ +  + ++  AF +L ++ + GC P+  S+T LI+ LC   ++ EA   F +M  
Sbjct: 113 NVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW 172

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G + DVV Y TLI+G CK+        +L SM +    P+ + Y  ++ +  K  +  +
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQ 232

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L  EM   G  P++   N ++   C LGE K    + NEM  + + P   S   +V 
Sbjct: 233 AFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               +G + +A +    M   G+   P   T  AL++      +++ A  V+  +V KGC
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGV--EPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGC 350

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             NV+++   I+       + +A     +M    ++P   T+  L+ GL  +   Q A  
Sbjct: 351 APNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIA 410

Query: 582 ITEKVRKMAAERQI 595
           +    R+M A  QI
Sbjct: 411 L---FREMVACGQI 421



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/291 (19%), Positives = 120/291 (41%), Gaps = 2/291 (0%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           +++N   S Y     + DA      M      P+   +  ++ ++ ++++         +
Sbjct: 40  LLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRK 99

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M+  G   +V T   LI+ FC   +++  + +L  +++ G  P+  ++  ++     + +
Sbjct: 100 MDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQ 159

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           + E + L  +M   G  PDV  Y  +I   CK G    A+ +   ME  +  P    +  
Sbjct: 160 IGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGT 219

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++H         +A   F EM+ +G+  +P   T  +L+ +L    + +    + + +V 
Sbjct: 220 LIHSLCKDRQQTQAFNLFSEMITKGI--SPNIVTCNSLVYALCNLGEWKHVNTLLNEMVD 277

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
                N  + T  + +L   G V +A      M  + V P   T+  L+ G
Sbjct: 278 SKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDG 328


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/446 (29%), Positives = 219/446 (49%), Gaps = 9/446 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A   PN V     Y A+I  L K  +        EEM      + T   + +++     A
Sbjct: 137 AGCSPNVV----AYTAVIDGLLKAGRIEDGLKNFEEMSGSS-CVPTRTTYTVVIDGLCKA 191

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHF 246
           +M+  A +V ++M + GC PD   +  L+D   K S + EA KL D M  +  +P+   +
Sbjct: 192 QMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTY 251

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            S+++G+CK   + EAK V+ QM++ G EP + ++ +LLS Y   G+  +A+++L EM  
Sbjct: 252 GSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTA 311

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +GC P+   YT LI  L    ++ EA   F  M   GC  D +TY T+I  F K   ++ 
Sbjct: 312 RGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEA 371

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             EIL+ M + G+ P+   Y  +M  + K E +++   +   M   G  P+   +NV++ 
Sbjct: 372 AGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMH 431

Query: 427 LACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              K G+   A +++ EM E   + P   S+ +++ G    G + EA   F+EM+ RG++
Sbjct: 432 GLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGII 491

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P+  T  +L+ SL +A ++  AK +   +V  G   +V A++  I  L  +  V  A 
Sbjct: 492 --PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAW 549

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLK 571
               +MM     P   T+  L RG +
Sbjct: 550 DVFQEMMKRGCAPNEVTYKVLRRGFR 575



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 138/513 (26%), Positives = 246/513 (47%), Gaps = 17/513 (3%)

Query: 102 LRPG--LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDV--YRALIKSLSKMRKFGAV 157
            RP   L   VI+    AG+L   Y+   + +     S DV  Y  +IK L+  ++    
Sbjct: 72  FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPK----ASLDVISYTTVIKGLADSKRIDEA 127

Query: 158 WALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
             L EE++     P ++    +  ++     A  ++  ++  +EM    C P    +  +
Sbjct: 128 CELFEELKTAGCSPNVVA---YTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVV 184

Query: 216 LDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           +D LCK   + +A K+F++M ++   P    +T+L+ G+ K  K+ EA+ +L  M   G 
Sbjct: 185 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP 244

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           EP  V Y +++ G+ ++  + +A E++ +MR +GC+P    +T L+       + EEA +
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 304

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              EM   GC  DV+ YT+LI     + ++     + DSMI++G  P+ LTY  I+    
Sbjct: 305 VLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFS 364

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K   +E   E++  M K G  PD   YN ++    KL  + +A  V++ M A+ + P   
Sbjct: 365 KIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAV 424

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           +F V++HG    G    A   FKEM+ +  +  P   +   L++ L +A +V  A   + 
Sbjct: 425 TFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVP-PTLVSYTILIDGLGKAGRVSEAFLQFQ 483

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            ++ +G     + +T  I+SL   G + EA     DM+   V P    ++ L+ GL    
Sbjct: 484 EMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSS 543

Query: 575 NRQIAAEI-TEKVRKMAAERQITFKMYKRRGER 606
               A ++  E +++  A  ++T+K+  RRG R
Sbjct: 544 MVDTAWDVFQEMMKRGCAPNEVTYKVL-RRGFR 575



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 206/459 (44%), Gaps = 66/459 (14%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           ++   AS   + +A +  + M   GCEPD   F  L+   CK    +   KL ++  +RF
Sbjct: 13  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKRF 72

Query: 240 KPSLRHFTSLLYGWCKEGKLV--------------------------------EAKYVLV 267
           +P +  +TS+++G+CK G L                                 EA  +  
Sbjct: 73  RPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFE 132

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           ++K AG  P++V Y  ++ G  + G++ D  +  +EM    C P   +YTV+I  LC+ +
Sbjct: 133 ELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQ 192

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
            + +A + F +M + GC  D +TYTTLI GF K+ K+D   ++LD M+ +G  P  +TY 
Sbjct: 193 MLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYG 252

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            I+    K + + E  E++ +MR+ GC P +  +  ++      G  +EA  V  EM A 
Sbjct: 253 SIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTAR 312

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTL------------- 493
             +P    +  ++      G + EA   F  M+ +G    A  YGT+             
Sbjct: 313 GCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAA 372

Query: 494 -------------------KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
                               +L++  ++ ++V+ A  V+  +V  G + N   + + +H 
Sbjct: 373 GEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHG 432

Query: 535 LFSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGLKK 572
           LF +G    A S   +M++  +V P   ++  L+ GL K
Sbjct: 433 LFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGK 471



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 193/423 (45%), Gaps = 49/423 (11%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEA 262
           GCEP    +  ++  L     + EA K F+ M +   +P +  FT+L++G+CK G+  + 
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ-PQV 60

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMG------------------------------ 292
            + L+      F PD+ +Y +++ GY + G                              
Sbjct: 61  GHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLAD 120

Query: 293 --KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
             ++ +A EL +E++  GC PN  +YT +I  L +  ++E+  + F EM  S C     T
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           YT +I G CK++ +    ++ + M+Q+G +P+ +TY  ++    K  +++E  +L+  M 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             G  P    Y  ++   CKL  + EA  V  +M      PG   F  ++  +L +G   
Sbjct: 241 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 300

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA +   EM  RG   AP      +L++ L    +V  A+ V+  ++ KGC  +   +  
Sbjct: 301 EAYQVLTEMTARG--CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 358

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA--KLMRGLKKL---------YNRQIA 579
            I +    G+V EA    L++M A     PD FA   LM G  KL         Y+R +A
Sbjct: 359 IIQNFSKIGNV-EAAGEILELM-AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 416

Query: 580 AEI 582
           + I
Sbjct: 417 SGI 419



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 7/331 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +++    K+        ++ +MR+   +P L    +F  L+  + S    ++A +VL 
Sbjct: 251 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLF---IFTSLLSYYLSKGRAEEAYQVLT 307

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           EM   GC PD  ++  L+D L     V EA  +FD M E+   P    + +++  + K G
Sbjct: 308 EMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIG 367

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +L  M  +G  PD   YN+L+ GY ++ ++  AF +   M   G  PNA ++ 
Sbjct: 368 NVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN 427

Query: 318 VLIQALCRMEKMEEANRAFVEM-ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           VL+  L +  K + A   F EM E+      +V+YT LI G  K+ ++   +     MI 
Sbjct: 428 VLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMID 487

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RGI+P   TY  ++ +  K   + E  +L+ +M K+G  PDV  Y+ +I        +  
Sbjct: 488 RGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDT 547

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           A +V+ EM     +P   ++ V+  GF   G
Sbjct: 548 AWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 578



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 36/219 (16%)

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF-------L 464
           +GC P + +YN VI     + ++ EA   +N M      P   +F  ++HGF       +
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 465 GQGCLIEACE-------------------------YFKEMVGRGLLSAPQYGTLKALLNS 499
           G   L +A +                         YF+ +  +  L    Y T   ++  
Sbjct: 61  GHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTT---VIKG 117

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L  +++++ A +++  + T GC  NV A+T  I  L   G +++      +M  +  +P 
Sbjct: 118 LADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPT 177

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITF 597
             T+  ++ GL K      A ++ E+ V+K      IT+
Sbjct: 178 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITY 216


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 214/445 (48%), Gaps = 7/445 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           Y A++ S+ + RK   V    +  R+     ++  VF   IL+R F +A  ++  +   +
Sbjct: 170 YNAILDSIVRCRK--PVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFE 227

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM +  C P+   +  ++ A CK   + EA KL   M  E  +P+L  +  ++ G C+ G
Sbjct: 228 EMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVG 287

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ E   VL +M   GF PD V YN L++GY ++G    A  L  EM R G  P+  +YT
Sbjct: 288 RIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYT 347

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  +C+   +  A   F +M   G   + VTYT+LI+GF +   +D  Y I D MI+ 
Sbjct: 348 SLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRS 407

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P  +TY  ++  H     +EE + L+  M   G  PDV +Y+ +I   C+  EL  A
Sbjct: 408 GFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRA 467

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  EM    +SP   ++  ++ G   Q  L EAC+ F+EM+ + LL  P   T  +L+
Sbjct: 468 FQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLL--PDEFTYTSLI 525

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N   +   +  A ++   ++ KG   +   + + I+ L      +EA    L +   + +
Sbjct: 526 NGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESI 585

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEI 582
           P   T+  L+     +  + + A I
Sbjct: 586 PNGITYDTLIESCSDIEFKSVVALI 610



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 227/475 (47%), Gaps = 28/475 (5%)

Query: 117 AGNL--GYRYYMWASKQ---PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KP 169
           AGNL  G R++    +    PN V     Y  +I +  K+++    + L+  M  E  +P
Sbjct: 216 AGNLEMGLRFFEEMERNRCLPNVV----TYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEP 271

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            L+T  + +  + R      +++   VL EM + G  PD   +  L++  CK  +  +A 
Sbjct: 272 NLLTYNMVINGLCRVGR---IEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQAL 328

Query: 230 KLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
            L  EM R    P +  +TSL+   CK G L  A     QM   G  P+ V Y +L++G+
Sbjct: 329 VLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGF 388

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
           +Q G M +A+ +  EM R G  P   +Y  L+   C   +MEEA      ME  G   DV
Sbjct: 389 SQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDV 448

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           V+Y+T+I+GFC+ +++DR +++   M+++G+ P+ +TY  ++    ++  L E  +L  E
Sbjct: 449 VSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQE 508

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M     +PD   Y  +I   CK G+L EA+N+ +EM      P T ++ V+++G   Q  
Sbjct: 509 MLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQAR 568

Query: 469 LIEACE-----YFKEMVGRGLL--------SAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
             EA       ++ E +  G+         S  ++ ++ AL+        +  A  V+  
Sbjct: 569 TREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFES 628

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++ +  + N   + + IH    +G+V +A     +M+D   +P   T   L++ L
Sbjct: 629 MIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL 683



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 207/437 (47%), Gaps = 39/437 (8%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLD---------------------------------- 198
           ++ VF ++++  +    ++KA+ ++D                                  
Sbjct: 131 SSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKV 190

Query: 199 --EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
             EM   G   + F +  L+   C   +++   + F+EM R R  P++  + +++  +CK
Sbjct: 191 YREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCK 250

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             ++ EA  +L  M   G EP+++ YN +++G  ++G++ +   +L EM RKG  P+  +
Sbjct: 251 LKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVT 310

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  L+   C++    +A     EM R+G   DVVTYT+LI+  CK+  ++R  E  D M 
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH 370

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            RG+ PN +TY  ++    +K  ++E   +  EM + G  P +  YN ++   C  G ++
Sbjct: 371 VRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRME 430

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA+ +   ME   LSP   S+  ++ GF     L  A +   EMV +G+  +P   T  +
Sbjct: 431 EAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGV--SPDAITYSS 488

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+  L   +++  A D++  ++ K    + + +T  I+     G + EA +   +M+   
Sbjct: 489 LIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKG 548

Query: 556 VMPQPDTFAKLMRGLKK 572
            +P   T+  L+ GL K
Sbjct: 549 FLPDTVTYNVLINGLNK 565



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 36/345 (10%)

Query: 101 VLRPGLTERV------INRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLS 149
           +LR GL   V      IN    AGNL      +         PN V     Y +LI   S
Sbjct: 334 MLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGV----TYTSLINGFS 389

Query: 150 KMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
           +       + + +EM +    P ++T     +L     S RM ++AI +L  M   G  P
Sbjct: 390 QKGFMDEAYRIWDEMIRSGFPPTIVTYNA--LLNGHCVSGRM-EEAIGLLRGMEGKGLSP 446

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D   +  ++   C+   +  A ++  EM E+   P    ++SL+ G C++ +L EA  + 
Sbjct: 447 DVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M +    PD   Y +L++GY + G + +A  L  EM +KG  P+  +Y VLI  L + 
Sbjct: 507 QEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQ 566

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLIS---------------GFCKSRKIDRCYEIL 371
            +  EA R  +++       + +TY TLI                GFC    ++   ++ 
Sbjct: 567 ARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVF 626

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           +SMI+R   PN+  Y  I+  H +   + +  +L  EM   G +P
Sbjct: 627 ESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIP 671



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 17/258 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI+ L + R+      L +EM   K  L     +  L+  +     + +A+ + DEM
Sbjct: 486 YSSLIQGLCEQRRLNEACDLFQEMLN-KSLLPDEFTYTSLINGYCKEGDLNEALNLHDEM 544

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKL---------------FDEMRERFKP-SLR 244
            K G  PD   +  L++ L K +  +EA +L               +D + E       +
Sbjct: 545 IKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFK 604

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
              +L+ G+C +G + EA  V   M     +P+  VYN ++ G+ + G +  A +L KEM
Sbjct: 605 SVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEM 664

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              G  P+  +   L++AL      E+ N    ++ RS   +D      L+    K   I
Sbjct: 665 VDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNI 724

Query: 365 DRCYEILDSMIQRGILPN 382
           D  + +L  M + G LP+
Sbjct: 725 DAVFNLLTEMAKDGFLPS 742


>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
          Length = 528

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 206/417 (49%), Gaps = 6/417 (1%)

Query: 69  EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           + + DVE +    + FH+   +    L+  G      +   V+ R  ++    +  + WA
Sbjct: 76  DVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLARLRNSCAAAHAAFRWA 135

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           S QP Y      Y +++  L+K R+F    AL+++MR+    L +    ++L+RR+ +AR
Sbjct: 136 SAQPGYAPGRHAYHSMLAILAKHRRFDDARALLDQMRRS--SLASPAAVMLLIRRYCAAR 193

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            V  A+     +P  G  P    F  LL ALC+  +V++A  L     + F    + F  
Sbjct: 194 DVAGAVAAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKSFNV 253

Query: 249 LLYGWCKEGKLV-EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L GWC   + V EAK     M+  G + D+V Y +++S +++ G +    +L   M+  
Sbjct: 254 VLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEA 313

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+   Y  ++ AL +   + EA      ME  G   D  T+ +LI   CK+R++   
Sbjct: 314 GVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEA 373

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++LD M+ RG+ P+  T+ H +L  +      E  +L+ +M+++ C P++  + ++IR 
Sbjct: 374 RKMLDDMLGRGLSPSVRTF-HALL--DVARSPIEVFDLLDKMKELQCDPEMDTFIMLIRK 430

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            C+  +      +W+ M A  LSP   +++V++HG    G L E+ +Y++EM  +G 
Sbjct: 431 FCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGF 487



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 161/361 (44%), Gaps = 9/361 (2%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           G  P    +  +L  L K+    +A  L D+MR     S      L+  +C    +  A 
Sbjct: 140 GYAPGRHAYHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGAV 199

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
                +   GF P +  ++ LL+   +   + DA  LL     K       S+ V++   
Sbjct: 200 AAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLS-SEKEFPFETKSFNVVLNGW 258

Query: 324 CRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           C M + + EA R +  ME  G + DVV+Y ++IS F K+  +D   ++ + M + G++P+
Sbjct: 259 CNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVVPD 318

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           +  Y  ++ A  K   + E   L+  M + G  PD + +N +IR  CK  +++EA  + +
Sbjct: 319 RKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLD 378

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQG-CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           +M    LSP   +F    H  L      IE  +   +M  + L   P+  T   L+    
Sbjct: 379 DMLGRGLSPSVRTF----HALLDVARSPIEVFDLLDKM--KELQCDPEMDTFIMLIRKFC 432

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           R ++ +  + +WS +   G   +  A+ + IH LF NG ++E+  Y  +M      P+  
Sbjct: 433 RWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPPEKK 492

Query: 562 T 562
           T
Sbjct: 493 T 493



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 4/203 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           F+ A  +   +++ + M + G  PD  ++  ++ AL K   V EA  L   M E+   P 
Sbjct: 294 FSKAGSLDTVMKLFNRMKEAGVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPD 353

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              F SL+   CK  ++ EA+ +L  M   G  P +  ++ LL          + F+LL 
Sbjct: 354 TATFNSLIRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLD---VARSPIEVFDLLD 410

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M+   CDP  +++ +LI+  CR  + +   + +  M  +G   D   Y  LI G   + 
Sbjct: 411 KMKELQCDPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNG 470

Query: 363 KIDRCYEILDSMIQRGILPNQLT 385
           +++   +  + M  +G  P + T
Sbjct: 471 RLEESAKYYEEMKAKGFPPEKKT 493



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 157 VWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           V+ L+++M++ +  P++ T   F++L+R+F   R      ++   MP  G  PD   +  
Sbjct: 405 VFDLLDKMKELQCDPEMDT---FIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIV 461

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           L+  L  N  ++E+AK ++EM+ +  P  +    ++  W    +L +A
Sbjct: 462 LIHGLFLNGRLEESAKYYEEMKAKGFPPEKKTEEMIQAWLSGRELAKA 509


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 247/512 (48%), Gaps = 36/512 (7%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT-------ERVINR--CGDAG 118
           N F+H VE++    K + S     ++  Q   V++  GL        ++++N      AG
Sbjct: 19  NSFTHFVERLIYTYKDWGSDPHVFDVFFQ---VLVEAGLLNEARKFFDKLLNYGVALSAG 75

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
           +        +SK+       D+   ++K  S+  + G  W               TE + 
Sbjct: 76  SCNLYLTCLSSKR-------DMLGMVLKVFSEFPQLGVCW--------------NTESYN 114

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           ILM        +++A  +L  M   GC PD   +  ++D  C    +++  +L  EM+ +
Sbjct: 115 ILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLK 174

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             KP+L  ++S++   CK GK+VE + VL +M   G  PD V+Y  L+ G+ ++G    A
Sbjct: 175 GLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAA 234

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           ++L  EM  +   P++ +++ LI  L    K+ EA++ F EM + G E D VTYT LI G
Sbjct: 235 YKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDG 294

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK  ++ + + + + M+Q G+ PN +TY  +     K  EL+   EL+ EM + G   +
Sbjct: 295 YCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLN 354

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +S YN ++   CK G + +AV +  EM+ A L P T ++  ++  +   G +++A E  +
Sbjct: 355 ISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLR 414

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ RGL   P   T   L+N L  + K+E  + +   ++ KG   N   +   +     
Sbjct: 415 EMLDRGL--QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCI 472

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +++ +      M    V+P  +T+  L++G
Sbjct: 473 RNNMRISTEIYRGMCAQGVVPDSNTYNILIKG 504



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 191/369 (51%), Gaps = 8/369 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMV 190
           P++V    +Y  LI    K+    A + L  EM  E  +++   + F  L+   + +  V
Sbjct: 213 PDHV----IYTTLIDGFCKLGNTQAAYKLFSEM--EAREIVPDSIAFSALICGLSGSGKV 266

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSL 249
            +A ++ +EM K G EPDE  +  L+D  CK   +K+A  L ++M +    P++  +T+L
Sbjct: 267 VEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTAL 326

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
             G CK G+L  A  +L +M   G + +I  YN +++G  + G +  A +L++EM+  G 
Sbjct: 327 ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL 386

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +YT L+ A  +  +M +A     EM   G +  VVT+  L++G C S K++    
Sbjct: 387 HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGER 446

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +L  M+++GI+PN  TY  IM  +  +  +    E+   M   G VPD + YN++I+  C
Sbjct: 447 LLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHC 506

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K   +KEA  +  EM     +    S+  ++ GF  +  L+EA + F+EM   GL+++ +
Sbjct: 507 KARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAE 566

Query: 490 YGTLKALLN 498
              L   +N
Sbjct: 567 IYNLFVDMN 575



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 151/306 (49%), Gaps = 6/306 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K+ +    + L  +M +    P ++T   +  L      +  +  A E+L 
Sbjct: 288 YTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVT---YTALADGLCKSGELDTANELLH 344

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G + +   +  +++ LCK  ++ +A KL +EM+E    P    +T+L+  + K G
Sbjct: 345 EMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTG 404

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++V+A+ +L +M D G +P +V +N L++G    GK+ D   LLK M  KG  PNA +Y 
Sbjct: 405 EMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYN 464

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +++  C    M  +   +  M   G   D  TY  LI G CK+R +   + +   M+++
Sbjct: 465 SIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEK 524

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
                  +Y  ++    K+++L E  +L  EMR+ G V     YN+ + +  + G ++  
Sbjct: 525 RFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETT 584

Query: 438 VNVWNE 443
           + + +E
Sbjct: 585 LELCDE 590



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 41/285 (14%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y AL   L K  +      L+ EM ++  QL     +  ++     A  + 
Sbjct: 318 PNVV----TYTALADGLCKSGELDTANELLHEMCRKGLQL-NISTYNTIVNGLCKAGNIL 372

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+++++EM + G  PD   +  L+DA  K   + +A +L  EM +R  +P++  F  L+
Sbjct: 373 QAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLM 432

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C  GKL + + +L  M + G  P+   YN+++  Y     M  + E+ + M  +G  
Sbjct: 433 NGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVV 492

Query: 311 PNANSYTVLIQALCRMEKMEEA-----------------------------------NRA 335
           P++N+Y +LI+  C+   M+EA                                    + 
Sbjct: 493 PDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQL 552

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
           F EM R G  A    Y   +    +   ++   E+ D  I++ +L
Sbjct: 553 FEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEKCLL 597


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 219/447 (48%), Gaps = 21/447 (4%)

Query: 72  HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ 131
           +D E I +IL   H+     E +LQ +G+ L P L  + +        +    + ++   
Sbjct: 29  NDAELISKILLTHHNPYHFTESSLQLNGITLTPILLTQTLTLLKHHSKIALSLHNFSKSL 88

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASARMV 190
           PN   S   Y  LI  +SK+ +F     L+ EM +   P   TT  F IL++R  SA + 
Sbjct: 89  PNPPLSLQSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTT--FFILIKRLISANLT 146

Query: 191 KKAIEVLDEMPKYG---CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
           ++A+   +E+  Y       D F +  LLD LCK   VK A +LF+    RF   ++ +T
Sbjct: 147 RQAVRAFNEIESYTDTKLTSDHFTY--LLDTLCKYGYVKHACELFNRNSNRFVADVKMYT 204

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT----------DA 297
            L+YGWCK G+   A   L +MK  G EP++V YN +L+G  +   +           DA
Sbjct: 205 VLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTIRDA 264

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++  EMR  G +P+  S+++++    R  K +        M+  G   +VVTYT++I  
Sbjct: 265 EKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVVTYTSVIKC 324

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVP 416
            C   +I+   +++D M++ G+ P   TY      +  +++ ++ ++   +M++ G C P
Sbjct: 325 LCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGLCEP 384

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
               Y V+I +  K   +     +WN+M  + + P  DS+ V++HG        EAC+YF
Sbjct: 385 TTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKKWREACQYF 444

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRA 503
            EM+ +G L  PQ  T + L   L+++
Sbjct: 445 VEMIEKGFL--PQKVTFETLYRGLIQS 469



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 16/186 (8%)

Query: 165 RKEKPQLITTEV--------------FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           R  KPQL+  ++              +  +++   S   +++A +++DEM + G  P   
Sbjct: 292 RAHKPQLVLDKLGLMKEKGICPNVVTYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAA 351

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
            + C            +A K F +M+E    +P+   +  L+  + K   +   K +   
Sbjct: 352 TYNCFFKEYRGRKDADKALKFFKKMKEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWND 411

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M ++G  PD+  Y  L+ G  +  K  +A +   EM  KG  P   ++  L + L + + 
Sbjct: 412 MMESGVGPDLDSYTVLIHGLCESKKWREACQYFVEMIEKGFLPQKVTFETLYRGLIQSDM 471

Query: 329 MEEANR 334
           +    R
Sbjct: 472 LRTWRR 477


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 217/442 (49%), Gaps = 11/442 (2%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE 163
           PG    +I +   +G       + A+ +P+ +     Y A++       +  A   L+ +
Sbjct: 94  PGPCAALIKKLCASGRTAEARRVLAACEPDVM----AYNAMVAGYCVTGQLDAARRLVAD 149

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           M  E      +  +  L+R          A+ VLD+M + GC PD   +  LL+A CK S
Sbjct: 150 MPMEP----DSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRS 205

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
             K+A KL DEMR +   P +  +  ++ G C+EG++ +A   L  +   G EP+ V YN
Sbjct: 206 GYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYN 265

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L G     +  DA +L+ EM +KG  PN  ++ +LI  LCR   +E A     ++ + 
Sbjct: 266 IVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKY 325

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  + ++Y  ++  FCK +K+DR    ++ M+ RG  P+ ++Y  ++ A  +  E++  
Sbjct: 326 GCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAA 385

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           VEL+ +++  GC P + +YN VI    K G+ KEA+ + NEM    L P   ++  +  G
Sbjct: 386 VELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSG 445

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +  + EA   F ++   G+   P      A+L  L + ++   A D++  +++ GC 
Sbjct: 446 LCREDRIEEAIRAFCKVQDMGI--RPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCM 503

Query: 523 LNVYAWTIWIHSLFSNGHVKEA 544
            N   +TI I  L   G VKEA
Sbjct: 504 PNESTYTILIEGLTYEGLVKEA 525



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 3/366 (0%)

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKY 264
           EPD + +  L+  LC       A  + D+M R    P +  +T LL   CK     +A  
Sbjct: 153 EPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMK 212

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +L +M+  G  PDI+ YN +++G  Q G++ DA E LK +   GC+PN  SY ++++ LC
Sbjct: 213 LLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLC 272

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
             E+ E+A +   EM + G   +VVT+  LIS  C+   ++   E+LD + + G  PN L
Sbjct: 273 TAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSL 332

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           +Y  I+ A  K+++++  +  +  M   GC PD+ +YN ++   C+ GE+  AV + +++
Sbjct: 333 SYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 392

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           +    +P   S+  ++ G    G   EA E   EMV +GL   P   T   + + L R  
Sbjct: 393 KDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGL--QPDIITYSTISSGLCRED 450

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           ++E A   +  +   G   N   +   +  L        A    + M+    MP   T+ 
Sbjct: 451 RIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYT 510

Query: 565 KLMRGL 570
            L+ GL
Sbjct: 511 ILIEGL 516



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 190/383 (49%), Gaps = 13/383 (3%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGC--LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
           +++A+ +++ M   G EP      C  L+  LC +    EA ++        +P +  + 
Sbjct: 75  LEEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEARRVL----AACEPDVMAYN 128

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++ G+C  G+L  A+ ++  M     EPD   YN L+ G    G+  +A  +L +M R+
Sbjct: 129 AMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRR 185

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC P+  +YT+L++A C+    ++A +   EM   GC  D++TY  +++G C+  ++D  
Sbjct: 186 GCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDA 245

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E L S+   G  PN ++Y  ++      E  E+  +LM EM + G  P+V  +N++I  
Sbjct: 246 IEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISF 305

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G ++ A+ V +++     +P + S+  ++H F  Q  +  A  + + MV RG    
Sbjct: 306 LCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCY-- 363

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   +   LL +L R  +V+ A ++   +  KGC   + ++   I  L   G  KEA   
Sbjct: 364 PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALEL 423

Query: 548 CLDMMDADVMPQPDTFAKLMRGL 570
             +M+   + P   T++ +  GL
Sbjct: 424 LNEMVTKGLQPDIITYSTISSGL 446



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 175/349 (50%), Gaps = 6/349 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++  K   +     L++EMR +   P +IT  V V           V  AIE L 
Sbjct: 194 YTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVV---NGICQEGRVDDAIEFLK 250

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +P +GCEP+   +  +L  LC     ++A KL  EM ++ + P++  F  L+   C+ G
Sbjct: 251 SLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRG 310

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  VL Q+   G  P+ + YN +L  + +  KM  A   ++ M  +GC P+  SY 
Sbjct: 311 LVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYN 370

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ ALCR  +++ A     +++  GC   +++Y T+I G  K+ K     E+L+ M+ +
Sbjct: 371 TLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK 430

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  I     +++ +EE +    +++ +G  P+   YN ++   CK  E   A
Sbjct: 431 GLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNA 490

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           ++++  M +    P   ++ +++ G   +G + EA E   E+  RG++S
Sbjct: 491 IDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVS 539



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 150/288 (52%), Gaps = 10/288 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y  ++K L    ++     LM EM ++   P ++T   F +L+       
Sbjct: 258 EPNTVS----YNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVT---FNMLISFLCRRG 310

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           +V+ A+EVLD++PKYGC P+   +  +L A CK   +  A    + M  R   P +  + 
Sbjct: 311 LVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYN 370

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +LL   C+ G++  A  +L Q+KD G  P ++ YN ++ G  + GK  +A ELL EM  K
Sbjct: 371 TLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK 430

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y+ +   LCR +++EEA RAF +++  G   + V Y  ++ G CK R+    
Sbjct: 431 GLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNA 490

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            ++   MI  G +PN+ TY  ++     +  ++E  EL+GE+   G V
Sbjct: 491 IDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVV 538



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 150/340 (44%), Gaps = 14/340 (4%)

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV--YNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L G  + G L EA  ++  M  +G EP         L+      G+  +A  +L      
Sbjct: 66  LRGLVRRGDLEEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEARRVLA----- 118

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            C+P+  +Y  ++   C   +++ A R   +M     E D  TY TLI G C   +    
Sbjct: 119 ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPM---EPDSYTYNTLIRGLCGRGRTGNA 175

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +LD M++RG +P+ +TY  ++ A  K+   ++ ++L+ EMR  GC PD+  YNVV+  
Sbjct: 176 LVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNG 235

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G + +A+     + +    P T S+ +++ G        +A +   EM  +G    
Sbjct: 236 ICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY--P 293

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L++ L R   VE A +V   I   GC  N  ++   +H+      +  A ++
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 353

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
              M+     P   ++  L+  L +      A E+  +++
Sbjct: 354 VELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 393



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 131/315 (41%), Gaps = 49/315 (15%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA--NSYTVLIQALCRMEKMEEAN 333
           P   V N+ L G  + G + +A  L++ M   G +P+A       LI+ LC   +  EA 
Sbjct: 57  PHRAVSNDRLRGLVRRGDLEEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEAR 114

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R       + CE DV+ Y  +++G+C + ++D    ++  M      P+  TY  ++   
Sbjct: 115 RVL-----AACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPME---PDSYTYNTLIRGL 166

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
             +      + ++ +M + GCVPDV  Y +++   CK    K+A+ + +EM A       
Sbjct: 167 CGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRA------- 219

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
                       +GC                  AP   T   ++N + +  +V+ A +  
Sbjct: 220 ------------KGC------------------APDIITYNVVVNGICQEGRVDDAIEFL 249

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             + + GCE N  ++ I +  L +    ++A     +M      P   TF  L+  L + 
Sbjct: 250 KSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRR 309

Query: 574 YNRQIAAEITEKVRK 588
              + A E+ +++ K
Sbjct: 310 GLVEPAMEVLDQIPK 324


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 219/436 (50%), Gaps = 8/436 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +L K +       ++  M K    P  +T   +  ++  + S+   K+AI  L 
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT---YNSILHGYCSSGQPKEAIGFLK 290

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL G+  +G
Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LVE   +L  M   G  PD  V++ L+  YA+ GK+  A  +  +MR++G +PNA +Y 
Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYG 410

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+  ++E+A   F +M   G     + Y +LI G C   K +R  E++  M+ R
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR 470

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N + +  I+ +H K+  + E  +L   M +IG  P+V  YN +I   C  G++ EA
Sbjct: 471 GICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEA 530

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + + + M +  L P T ++  +++G+     + +A   FKEM   G+  +P   T   +L
Sbjct: 531 MKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV--SPDIITYNIIL 588

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L + ++   AK+++  I   G ++ +  + I +H L  N    +A     ++   D+ 
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648

Query: 558 PQPDTFAKLMRGLKKL 573
            +  TF  ++  L K+
Sbjct: 649 LEARTFNIMIDALLKV 664



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 195/401 (48%), Gaps = 6/401 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPK---YGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           + IL++        ++A+E+L  M      G  PD   +  +++   K     +A   + 
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EM +R   P +  + S++   CK   + +A  VL  M   G  PD + YN++L GY   G
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  +A   LK+MR  G +P+  +Y++L+  LC+  +  EA + F  M + G + ++ TY 
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           TL+ G+     +   + +LD M++ GI P+   +  ++ A+ K+ ++++ + +  +MR+ 
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 400

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  P+   Y  VI + CK G +++A+  + +M    LSPG   +  ++HG         A
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + NV  +   I
Sbjct: 461 EELILEMLDRGICLNTIF--FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +     G + EA      M+   + P   T++ L+ G  K+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 559



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 192/425 (45%), Gaps = 42/425 (9%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R  KP++ T   +  L++ +A+   + +   +LD M + G  PD +VF  L+ A  K   
Sbjct: 330 RGLKPEITT---YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGK 386

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           V +A  +F +MR++   P+   + +++   CK G++ +A     QM D G  P  +VYN+
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ G     K   A EL+ EM  +G   N   +  +I + C+  ++ E+ + F  M R G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + +V+TY TLI+G+C + K+D   ++L  M+  G+ PN +TY  ++  + K   +E+ +
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 404 ELMGEMRKIGCVPDV-----------------------------------SNYNVVIRLA 428
            L  EM   G  PD+                                   S YN+++   
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK     +A+ ++  +    L     +F +M+   L  G   EA + F      GL+  P
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV--P 684

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            Y T + +  +++    +E    ++  +   GC ++       +  L   G +  A +Y 
Sbjct: 685 NYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTY- 743

Query: 549 LDMMD 553
           L M+D
Sbjct: 744 LSMID 748



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 196/415 (47%), Gaps = 10/415 (2%)

Query: 133 NYVH-SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           N +H  + V+  LI + +K  K      +  +MR++   P  +T    + ++ +  S R 
Sbjct: 365 NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK--SGR- 421

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V+ A+   ++M   G  P   V+  L+  LC  +  + A +L  EM +R    +   F S
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CKEG+++E++ +   M   G +P+++ YN L++GY   GKM +A +LL  M   G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  +Y+ LI   C++ +ME+A   F EME SG   D++TY  ++ G  ++R+     
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+   + + G      TY  I+    K +  ++ +++   +  +    +   +N++I   
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K+G   EA +++    +  L P   ++ +M    +GQG L E  + F  M   G     
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG--CTV 719

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
             G L  ++  LL+  ++  A    S I  K   L     +++I  L S G  +E
Sbjct: 720 DSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFI-DLLSGGKYQE 773



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 153/367 (41%), Gaps = 72/367 (19%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA--- 332
           PD+  Y  L+    + G++   F  L  + +KG   +A ++T L++ LC  ++  +A   
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 333 ---------------------------NRAFVEME---------RSGCEADVVTYTTLIS 356
                                      NR+   +E           G   DVV+YTT+I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           GF K    D+ Y     M+ RGILP+ +TY  I+ A  K + +++ +E++  M K G +P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D   YN ++   C  G+ KEA+    +M +  + P   ++ +++      G  +EA + F
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324

Query: 477 KEMVGRGL-LSAPQYGTL-------------KALLNSLLR-------------------A 503
             M  RGL      YGTL               LL+ ++R                    
Sbjct: 325 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ 384

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            KV+ A  V+S +  +G   N   +   I  L  +G V++A  Y   M+D  + P    +
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444

Query: 564 AKLMRGL 570
             L+ GL
Sbjct: 445 NSLIHGL 451



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 145/308 (47%), Gaps = 10/308 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE---ADVVTYT 352
           DA  +  E+ R+G   +       +  + R       +R +  M R+G +    D+ TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSR-YNRMARAGADEVTPDLCTYG 91

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL-MGEMRK 411
            LI   C++ ++D  +  L ++I++G   + + +  ++      +   + +++ +  M +
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTDSFVVMVHGFLGQGC 468
           +GC+P+V +YN++++  C     +EA+ + + M         P   S+  +++GF  +G 
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
             +A   + EM+ RG+L  P   T  +++ +L +AQ ++ A +V + +V  G   +   +
Sbjct: 212 SDKAYSTYHEMLDRGIL--PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              +H   S+G  KEA  +   M    V P   T++ LM  L K      A +I + + K
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329

Query: 589 MAAERQIT 596
              + +IT
Sbjct: 330 RGLKPEIT 337


>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
          Length = 572

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 227/478 (47%), Gaps = 22/478 (4%)

Query: 24  PNTTTSHVESTATTTNQLNSNLVCLKTKED-DCKCNNTTDTHGSHNEFSHDVE------- 75
           P+ T +H   +  +++   + L C    E  D     T+D H   ++   +V        
Sbjct: 53  PSFTNAHYNHSWVSSD---TGLTCHGDAEGADLPGGYTSDEHIHESDEDPEVSNEGSGFN 109

Query: 76  KIFRILKKFHSRLPKLE--LALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           K+  I K  HS LP  E   AL   G +  P L ++++ R    G   +R + WA  QP+
Sbjct: 110 KVLSITKDLHS-LPIEEARTALDDCGFIPSPNLVQKLLRRLQYDGKAAFRVFQWAGSQPD 168

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           Y H+  VY  +I  L   RKF   W L+ +M +    ++  +  +I+++R+A+A   +KA
Sbjct: 169 YSHTVSVYHTMISILGVHRKFDKGWGLIRKMHER--AMVNRQTLMIMIKRYAAAHDARKA 226

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I+    M K+    D   F CLL ALC+N  V+EA +L    ++ +    + F  +LYGW
Sbjct: 227 IKTFHAMDKFKLAADSDDFLCLLCALCRNMFVEEAEELIHFNKKCYPLETKSFNVILYGW 286

Query: 254 CKEG-KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           C     + + K +  +M +    PD   Y  ++  +++ GK  D   L  EM++KG  PN
Sbjct: 287 CNIFVDVYQVKRLWEEMSNLCITPDAFSYTTVICCFSKAGKFYDVVRLYDEMKKKGFTPN 346

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
              Y  +I  L +   ++EA   F ++   G   + VTYT LI   C++ K +  Y  LD
Sbjct: 347 LKVYNAVIYVLSKERCVKEALNLFNKIREMGFHPNAVTYTYLIYLLCRTWKPEEAYSYLD 406

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECV-ELMGEMRKIGCVPDVSNYNVVIRLACKL 431
            MI  G +P     + I  A  +  E E  + +L  +M + GC P +  Y + IR  C  
Sbjct: 407 KMIMEGFVPT----IDIYHAFFRFVENEGAICKLFDKMFENGCAPTMETYIMSIRRCCSW 462

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
            + + A  +WN+ME    S  +    ++++GFL  G   EAC+ ++EM   G    P+
Sbjct: 463 SDYENAFKLWNDMEKHWFSADSSIHYLLLNGFLLNGKPEEACKCYREMKVNGFSLEPK 520


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 229/458 (50%), Gaps = 4/458 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y   I++  K R F A   + EEMR+    +     + +++     +  V++A    +E
Sbjct: 245 TYSTFIEAHCKARDFDAAKKVFEEMRRRDCAM-NEVTYNVMISGLCRSGAVEEAFGFKEE 303

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGK 258
           M  YG  PD F +G L++ LCK S +KEA  L DEM     KP++  + +L+ G+ KEGK
Sbjct: 304 MVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK 363

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             EA  +L +M  AG +P+ ++Y+NL+ G  ++G++  A +LLKEM + G  P+  +Y  
Sbjct: 364 TAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNP 423

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+Q   +    + A     EM  SG   +V +Y  +I+G C++ +      +L+ MI  G
Sbjct: 424 LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN   Y  +++ H K+  +    E + +M K    PD+  YN +I+    +G ++EA 
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
             + +++   L P   ++  ++HG+   G L +A +  ++M+  GL   P   T   LL 
Sbjct: 544 EYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGL--KPNADTYTDLLE 601

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              ++   E    +   ++  G + + + + I I +L  + +++ A     ++    ++P
Sbjct: 602 GYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVP 661

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
               ++ L+ GL K+ + + A  + +++ K   E  I 
Sbjct: 662 DLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIV 699



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 207/406 (50%), Gaps = 12/406 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A  QPN +    +Y  LI+ L K+ + G    L++EM K   +P   T   +  LM+   
Sbjct: 377 AGVQPNKI----MYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFT---YNPLMQGHF 429

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
                  A E+L+EM   G  P+ + +G +++ LC+N   KEA  L +EM  E  KP+  
Sbjct: 430 QQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAF 489

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +  L+ G  KEG +  A   L +M  A   PD+  YN+L+ G + +G+M +A E   ++
Sbjct: 490 MYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQV 549

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +++G  P+  +Y+ LI   C+   +E+A++   +M  SG + +  TYT L+ G+ KS   
Sbjct: 550 QKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDY 609

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++   IL SM+  G  P+   Y  ++    + E +E    ++ E+ K G VPD+  Y+ +
Sbjct: 610 EKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSL 669

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK+ ++++AV + +EM    L PG   +  ++ GF   G +  A   F  ++ +GL
Sbjct: 670 ISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGL 729

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +  P   T  AL++   +   +  A D++  ++ +G   + + + +
Sbjct: 730 V--PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNV 773



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 201/450 (44%), Gaps = 38/450 (8%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           +T V  +L+  +     V+ A +V+  M   G  P       LL  L +  +++   KL 
Sbjct: 172 STAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLK 231

Query: 233 DEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
             M      P +  +++ +   CK      AK V  +M+      + V YN ++SG  + 
Sbjct: 232 GFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRS 291

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G + +AF   +EM   G  P+A +Y  L+  LC+  +++EA     EM  SG + ++V Y
Sbjct: 292 GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVY 351

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQL--------------------------- 384
            TL+ GF K  K    ++IL  MI  G+ PN++                           
Sbjct: 352 GTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK 411

Query: 385 --------TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
                   TY  +M  H ++ + +   EL+ EMR  G +P+V +Y ++I   C+ GE KE
Sbjct: 412 VGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKE 471

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A N+  EM +  L P    +  ++ G   +G +  ACE  ++M    +   P      +L
Sbjct: 472 AGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANV--HPDLFCYNSL 529

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +  L    ++E A++ ++ +  +G   + + ++  IH     G++++A      M+++ +
Sbjct: 530 IKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGL 589

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            P  DT+  L+ G  K  + +  + I + +
Sbjct: 590 KPNADTYTDLLEGYFKSNDYEKVSSILQSM 619



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 179/370 (48%), Gaps = 20/370 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V+SY +   +I  L +  +      L+EEM  E  KP        +I   +  +   
Sbjct: 451 PN-VYSYGI---MINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGN--- 503

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +  A E L++M K    PD F +  L+  L     ++EA + + ++++R   P    ++ 
Sbjct: 504 ISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSG 563

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++G+CK G L +A  +L QM ++G +P+   Y +LL GY +         +L+ M   G
Sbjct: 564 LIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSG 623

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+ + Y ++I+ L R E ME A     E+E++G   D+  Y++LISG CK   +++  
Sbjct: 624 DKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAV 683

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +LD M + G+ P  + Y  ++    +  ++     +   +   G VP+   Y  +I   
Sbjct: 684 GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGN 743

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC-----LIEACEYFKEMVGRG 483
           CK G++ +A +++ EM    ++P  D+FV  V   L  GC     L +A    +EM  RG
Sbjct: 744 CKNGDITDAFDLYKEMLDRGIAP--DAFVYNV---LATGCSDAADLEQALFLTEEMFNRG 798

Query: 484 LLSAPQYGTL 493
             +   + TL
Sbjct: 799 YANVSLFNTL 808



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 164/366 (44%), Gaps = 2/366 (0%)

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           +S++ A +  D       PS      L+  + K G +  A  V++ M D G  P     N
Sbjct: 153 ASIQRAIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCN 212

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            LL    +   M   ++L   M   G  P+  +Y+  I+A C+    + A + F EM R 
Sbjct: 213 GLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRR 272

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C  + VTY  +ISG C+S  ++  +   + M+  G+ P+  TY  +M    K   L+E 
Sbjct: 273 DCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEA 332

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             L+ EM   G  P++  Y  ++    K G+  EA ++  EM +A + P    +  ++ G
Sbjct: 333 KALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRG 392

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G L  A +  KEM+  GL   P   T   L+    +    + A ++ + +   G  
Sbjct: 393 LCKIGQLGRASKLLKEMIKVGL--RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGIL 450

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            NVY++ I I+ L  NG  KEA +   +M+   + P    +A L+ G  K  N  +A E 
Sbjct: 451 PNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEA 510

Query: 583 TEKVRK 588
            EK+ K
Sbjct: 511 LEKMTK 516



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 196/447 (43%), Gaps = 54/447 (12%)

Query: 72  HDVEKIFRILKKFHSR--LPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWAS 129
           HD +  F +L +  +   LP +     +S  ++  GL +       +AGNL     +   
Sbjct: 432 HDKDGAFELLNEMRNSGILPNV-----YSYGIMINGLCQN--GESKEAGNL-LEEMISEG 483

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASA 187
            +PN      +Y  LI   SK          +E+M K    P L     +  L++  ++ 
Sbjct: 484 LKPNAF----MYAPLIIGHSKEGNISLACEALEKMTKANVHPDLF---CYNSLIKGLSTV 536

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHF 246
             +++A E   ++ K G  PDEF +  L+   CK  ++++A +L  +M     KP+   +
Sbjct: 537 GRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTY 596

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T LL G+ K     +   +L  M  +G +PD  +Y  ++   ++   M  AF +L E+ +
Sbjct: 597 TDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEK 656

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P+ + Y+ LI  LC++  ME+A     EM + G E  +V Y  LI GFC+S  I R
Sbjct: 657 NGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISR 716

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD--------- 417
              + DS++ +G++PN +TY  ++  + K  ++ +  +L  EM   G  PD         
Sbjct: 717 ARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLAT 776

Query: 418 -------------------------VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
                                    VS +N ++   CK G+L+E   + + M    + P 
Sbjct: 777 GCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPN 836

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEM 479
             +   +V  F   G L EA   F E+
Sbjct: 837 AQTVEKVVSEFGKAGKLGEAHRVFAEL 863



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 140/276 (50%), Gaps = 7/276 (2%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           D Y  L++   K   +  V ++++ M    +KP      ++ I++R  + +  ++ A  V
Sbjct: 594 DTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPD---NHIYGIVIRNLSRSENMEVAFMV 650

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L E+ K G  PD  ++  L+  LCK + +++A  L DEM +E  +P +  + +L+ G+C+
Sbjct: 651 LTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCR 710

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G +  A+ V   +   G  P+ V Y  L+ G  + G +TDAF+L KEM  +G  P+A  
Sbjct: 711 SGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFV 770

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y VL         +E+A     EM   G  A+V  + TL+ GFCK  K+    ++L  M+
Sbjct: 771 YNVLATGCSDAADLEQALFLTEEMFNRG-YANVSLFNTLVHGFCKRGKLQETEKLLHVMM 829

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            R I+PN  T   ++    K  +L E   +  E+++
Sbjct: 830 DREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQ 865



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 40/210 (19%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKK 192
           V    +Y +LI  L K+        L++EM KE  +P ++    +  L+  F  +  + +
Sbjct: 660 VPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIV---CYNALIDGFCRSGDISR 716

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKP---------- 241
           A  V D +   G  P+   +  L+D  CKN  + +A  L+ EM +R   P          
Sbjct: 717 ARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLAT 776

Query: 242 ------------------------SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
                                   ++  F +L++G+CK GKL E + +L  M D    P+
Sbjct: 777 GCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPN 836

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
                 ++S + + GK+ +A  +  E+++K
Sbjct: 837 AQTVEKVVSEFGKAGKLGEAHRVFAELQQK 866


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 218/444 (49%), Gaps = 6/444 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +R ++KS  K  K    + L E+M          E + IL+  +A    V +A  + +E
Sbjct: 10  TFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIE-YNILIDGYAKKGRVDEANRLYEE 68

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G EP  + +  LL+A CK + +KEA +LF  M E+ F+P +  +++++ G CK GK
Sbjct: 69  MVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGK 128

Query: 259 LVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           + EA  +L  +M + G   + V YN L++G  +   +  A++LL+EM  KG  P+  +Y 
Sbjct: 129 VTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYN 188

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  LCRM K+ EA + F  M   G   DVV Y  L+    K  K D   ++   +I +
Sbjct: 189 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK 248

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G +P+ +TY  I+L   +K  ++E  E+  +M   GC P+ + Y++V+   C+  ++ +A
Sbjct: 249 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDA 308

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V  EM      P   ++ +++ G      + +A E F  MV  G   AP   +   +L
Sbjct: 309 HKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG--CAPDIVSYSVVL 366

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N L +  KV  A+ ++  ++ +    +V  + I +  L   G + EA      M  +   
Sbjct: 367 NGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCA 426

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAE 581
           P    +  LM GL+K   R I A+
Sbjct: 427 PDYVAYNTLMNGLRK-QGRHIQAD 449



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 195/393 (49%), Gaps = 13/393 (3%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAK 263
           C P+ + F  +L + CK   +++  KLF++M +    P    +  L+ G+ K+G++ EA 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +  +M   G EP I  YN+LL+ + +  KM +A EL K M  KG +P+  +Y+ +I  L
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 324 CRMEKMEEA-NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           C+  K+ EA    F +M   GC A+ V Y  LI+G CK   I+R Y++L+ M  +G +P+
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  I+    +  ++ E  +    M   G  PDV  YN ++    K G+  EA+ ++ 
Sbjct: 184 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFK 243

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           ++ A    P T ++  ++ G   +  + EA E FK+MV  G   AP   T   +L+   R
Sbjct: 244 DVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG--CAPNGATYSIVLSGHCR 301

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           A+KV+ A  V   +   G   +V  + I +  L     V +A      M+D    P   +
Sbjct: 302 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVS 361

Query: 563 FAKLMRGLKK---------LYNRQIAAEITEKV 586
           ++ ++ GL K         L++R I  ++   V
Sbjct: 362 YSVVLNGLCKTNKVHDARVLFDRMIERKLVPDV 394



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 176/348 (50%), Gaps = 1/348 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  +I  L K  K      ++     E+     T  +  L+        +++A ++L+E
Sbjct: 115 TYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEE 174

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G  PD   +  +L  LC+   V EA + FD M  R + P +  +  LL    KEGK
Sbjct: 175 MASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 234

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             EA  +   +   G+ PD V YN++L G A+   M +A E+ K+M   GC PN  +Y++
Sbjct: 235 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSI 294

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++   CR +K+++A++   EM + G   DVVTY  L+ G CK+  +D+ +E+  +M+  G
Sbjct: 295 VLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 354

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ ++Y  ++    K  ++ +   L   M +   VPDV  +N+++   CK G+L EA 
Sbjct: 355 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 414

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           ++ ++M  +  +P   ++  +++G   QG  I+A    + M  +G LS
Sbjct: 415 DLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLS 462



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 175/339 (51%), Gaps = 4/339 (1%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           MRE   P+   F  +L  +CK+GKL +   +  QM D G  PD + YN L+ GYA+ G++
Sbjct: 1   MRE-CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRV 59

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A  L +EM   G +P+  +Y  L+ A C+  KM+EA   F  M   G E DVVTY+T+
Sbjct: 60  DEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTI 119

Query: 355 ISGFCKSRKIDRCYEIL-DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           ISG CK+ K+    E+L   MI+RG   N + Y  ++    K E +E   +L+ EM   G
Sbjct: 120 ISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKG 179

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
            VPD   YN ++   C++G++ EA   ++ M +   SP   ++  ++     +G   EA 
Sbjct: 180 YVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAM 239

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           + FK+++ +G +  P   T  ++L  L R   ++ A++++  +V  GC  N   ++I + 
Sbjct: 240 KLFKDVIAKGYM--PDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLS 297

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                  V +A     +M     +P   T+  L+ GL K
Sbjct: 298 GHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK 336



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 134/315 (42%), Gaps = 41/315 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI  L K       + L+EEM  +   P  IT    +  + R      V +A +  D
Sbjct: 152 YNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGK---VSEAKQFFD 208

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-------------------------- 232
            MP  G  PD   +  LLDAL K     EA KLF                          
Sbjct: 209 SMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 268

Query: 233 --DEMRERFK--------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
             DE  E FK        P+   ++ +L G C+  K+ +A  VL +M   G  PD+V YN
Sbjct: 269 NMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYN 328

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            LL G  +   +  A EL   M   GC P+  SY+V++  LC+  K+ +A   F  M   
Sbjct: 329 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER 388

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
               DVVT+  L+ G CK+ K+D   ++LD M   G  P+ + Y  +M    K+    + 
Sbjct: 389 KLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQA 448

Query: 403 VELMGEMRKIGCVPD 417
             L   M++ G + D
Sbjct: 449 DRLTQAMKEKGFLSD 463


>gi|297720523|ref|NP_001172623.1| Os01g0816000 [Oryza sativa Japonica Group]
 gi|56785065|dbj|BAD82704.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572420|gb|EAZ13935.1| hypothetical protein OsJ_03862 [Oryza sativa Japonica Group]
 gi|255673815|dbj|BAH91353.1| Os01g0816000 [Oryza sativa Japonica Group]
          Length = 530

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 227/487 (46%), Gaps = 10/487 (2%)

Query: 1   MQRSSSKALSL--LTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCN 58
           + RSS+ A +    T  R F    R  +  S  +                  +EDD    
Sbjct: 10  IPRSSAAAATTRGFTDPRSFPLLFREGSRLSTSQGGIGNGGGGGGGGNGGDGEEDDP--F 67

Query: 59  NTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG 118
           +  D      + + DVE +    + FH+   +    L+  G      +   V++R  ++ 
Sbjct: 68  SFADLQKLPPDVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLDRLRNSC 127

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
              +  + WAS QP Y        +++  L+K R+F    AL+++MR+    L +    +
Sbjct: 128 AAAHAAFRWASAQPGYAPGRHACHSMLAILAKHRRFDDARALLDQMRRS--SLASPAAVM 185

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           +L+RR+ +AR V  A+     +P  G  P    F  LL ALC+  +V++A  L     + 
Sbjct: 186 LLIRRYCAARDVAGAVAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKE 245

Query: 239 FKPSLRHFTSLLYGWCKEGKLV-EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           F    + F  +L GWC   + V EAK     M+  G + D+V Y +++S +++ G +   
Sbjct: 246 FPFETKSFNVVLNGWCNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTV 305

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +L   M+  G  P+   Y  ++ AL + + + EA      ME  G   D  T+ +LI  
Sbjct: 306 MKLFNRMKEAGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRP 365

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK+R++    ++LD M+ RG+ P+  T+ H +L  +      E  +L+ +M+++ C P+
Sbjct: 366 LCKARQVQEARKMLDDMLGRGLSPSVRTF-HALL--DVARSPIEVFDLLDKMKELQCDPE 422

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  + ++IR  C+  +      +W+ M A  LSP   +++V++HG    G L E+ +Y++
Sbjct: 423 MDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYE 482

Query: 478 EMVGRGL 484
           EM  +G 
Sbjct: 483 EMKAKGF 489



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 162/361 (44%), Gaps = 9/361 (2%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           G  P       +L  L K+    +A  L D+MR     S      L+  +C    +  A 
Sbjct: 142 GYAPGRHACHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGAV 201

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
                + + GF P +  ++ LL+   +   + DA  LL     K       S+ V++   
Sbjct: 202 AAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLS-SEKEFPFETKSFNVVLNGW 260

Query: 324 CRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           C M + + EA R +  ME  G + DVV+Y ++IS F K+  +D   ++ + M + G++P+
Sbjct: 261 CNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVIPD 320

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           +  Y  ++ A  K + + E   L+  M + G  PD + +N +IR  CK  +++EA  + +
Sbjct: 321 RKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLD 380

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQG-CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           +M    LSP   +F    H  L      IE  +   +M  + L   P+  T   L+    
Sbjct: 381 DMLGRGLSPSVRTF----HALLDVARSPIEVFDLLDKM--KELQCDPEMDTFIMLIRKFC 434

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           R ++ +  + +WS +   G   +  A+ + IH LF NG ++E+  Y  +M      P+  
Sbjct: 435 RWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPPEKK 494

Query: 562 T 562
           T
Sbjct: 495 T 495



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 4/203 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           F+ A  +   +++ + M + G  PD  ++  ++ AL K   V EA  L   M E+   P 
Sbjct: 296 FSKAGSLDTVMKLFNRMKEAGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPD 355

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              F SL+   CK  ++ EA+ +L  M   G  P +  ++ LL          + F+LL 
Sbjct: 356 TATFNSLIRPLCKARQVQEARKMLDDMLGRGLSPSVRTFHALLD---VARSPIEVFDLLD 412

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M+   CDP  +++ +LI+  CR  + +   + +  M  +G   D   Y  LI G   + 
Sbjct: 413 KMKELQCDPEMDTFIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNG 472

Query: 363 KIDRCYEILDSMIQRGILPNQLT 385
           +++   +  + M  +G  P + T
Sbjct: 473 RLEESAKYYEEMKAKGFPPEKKT 495



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 157 VWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           V+ L+++M++ +  P++ T   F++L+R+F   R      ++   MP  G  PD   +  
Sbjct: 407 VFDLLDKMKELQCDPEMDT---FIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIV 463

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           L+  L  N  ++E+AK ++EM+ +  P  +    ++  W    +L +A
Sbjct: 464 LIHGLFLNGRLEESAKYYEEMKAKGFPPEKKTEEMIQAWLSGRELAKA 511


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 223/454 (49%), Gaps = 15/454 (3%)

Query: 146 KSLSKMRKFGAVWALMEEMRKE------KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           K LS + K G  + ++  + K+       P + T  +F   M  F   + V     VL +
Sbjct: 97  KLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIF---MNCFCQLQRVDLGFSVLAK 153

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           + K G +P    F  L++ LCK     +A +LFD+M  +  +P +  + +++ G CK G+
Sbjct: 154 VIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGE 213

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +L +M++AG +P++V Y+ L+    +   + +A ++   M+ KG  P+  +YT 
Sbjct: 214 TAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTS 273

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LIQ LC+  + +EA+    EM       D+VT+  L+  FCK  K+     +L +M + G
Sbjct: 274 LIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMG 333

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN +TY  +M  +    ++ E  +L   M   GC P++ +YN++I   CK   + EA+
Sbjct: 334 VEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAM 393

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++NEM    L+P   S+  ++HGF   G L EA + F+ M   G L  P   T   LL+
Sbjct: 394 QLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNL--PDLFTYSILLD 451

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +   +  A  ++  + +   + N+  +TI +H++  +G+ K+A     ++    + P
Sbjct: 452 GFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQP 511

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
               +  ++ GL K     +  E  E  R M A+
Sbjct: 512 HVQLYTTIINGLCK---EGLLDEALEAFRNMEAD 542



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 178/346 (51%), Gaps = 6/346 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K+ +  A   L+++M +   +P ++T   +  L+      R+V +A+++  
Sbjct: 201 YNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVT---YSTLIDSLCRDRLVNEALDIFS 257

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M   G  PD F +  L+  LCK S  KEA+ L +EM      P +  F  L+  +CKEG
Sbjct: 258 YMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEG 317

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  VL  M + G EP++V Y++L+ GY+    + +A +L   M  KGC PN  SY 
Sbjct: 318 KVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYN 377

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+ ++++EA + F EM   G   + V+Y TLI GFC+  K+    ++  +M   
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTN 437

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LP+  TY  ++    K+  L +   L   M+     P++  Y +++   CK G  K+A
Sbjct: 438 GNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDA 497

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
             +++E+    L P    +  +++G   +G L EA E F+ M   G
Sbjct: 498 RKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADG 543



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 41/316 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L K  ++    AL+ EM      P ++T   F +L+  F     V +A+ VL 
Sbjct: 271 YTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVT---FNVLVDTFCKEGKVSEALGVLK 327

Query: 199 EMPKYG-----------------------------------CEPDEFVFGCLLDALCKNS 223
            M + G                                   C+P+ F +  L++  CK  
Sbjct: 328 TMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAK 387

Query: 224 SVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            + EA +LF+EM  +   P+   + +L++G+C+ GKL EA+ +   M   G  PD+  Y+
Sbjct: 388 RIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYS 447

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            LL G+ + G +  AF L + M+     PN   YT+L+ A+C+    ++A + F E+   
Sbjct: 448 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQ 507

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G +  V  YTT+I+G CK   +D   E   +M   G  P++++Y  I+    + ++    
Sbjct: 508 GLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRA 567

Query: 403 VELMGEMRKIGCVPDV 418
           + L+GEMR  G + DV
Sbjct: 568 LLLVGEMRDRGFIADV 583



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 125/305 (40%), Gaps = 38/305 (12%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEADVVTY 351
            + DA      M  +   P    +  L+ A+ +M +  +   +   +ME  G   ++ T 
Sbjct: 72  NIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTL 131

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           +  ++ FC+ +++D  + +L  +I+ G+ P  +T+  ++    K  E  + VEL  +M  
Sbjct: 132 SIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVA 191

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            GC PDV  YN +I   CK+GE   A  +  +ME A                   GC   
Sbjct: 192 KGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEA-------------------GC--- 229

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
                           P   T   L++SL R + V  A D++S +  KG   +++ +T  
Sbjct: 230 ---------------QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSL 274

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L      KEA +   +M   ++MP   TF  L+    K      A  + + + +M  
Sbjct: 275 IQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGV 334

Query: 592 ERQIT 596
           E  + 
Sbjct: 335 EPNVV 339


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 218/436 (50%), Gaps = 8/436 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +L K +       ++  M K    P  +T   +  ++  + S+   K+AI  L 
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT---YNSILHGYCSSGQPKEAIGFLK 290

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL G+  +G
Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LVE   +L  M   G  PD  V++ L+  YA  GK+  A  +  +MR++G +PNA +Y 
Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYG 410

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+  ++E+A   F +M   G     + Y +LI G C   K +R  E++  M+ R
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR 470

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N + +  I+ +H K+  + E  +L   M +IG  P+V  YN +I   C  G++ EA
Sbjct: 471 GICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEA 530

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + + + M +  L P T ++  +++G+     + +A   FKEM   G+  +P   T   +L
Sbjct: 531 MKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV--SPDIITYNIIL 588

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L + ++   AK+++  I   G ++ +  + I +H L  N    +A     ++   D+ 
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648

Query: 558 PQPDTFAKLMRGLKKL 573
            +  TF  ++  L K+
Sbjct: 649 LEARTFNIMIDALLKV 664



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 194/401 (48%), Gaps = 6/401 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPK---YGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           + IL++        ++A+E+L  M      G  PD   +  +++   K     +A   + 
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EM +R   P +  + S++   CK   + +A  VL  M   G  PD + YN++L GY   G
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  +A   LK+MR  G +P+  +Y++L+  LC+  +  EA + F  M + G + ++ TY 
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           TL+ G+     +   + +LD M++ GI P+   +  ++ A+  + ++++ + +  +MR+ 
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQ 400

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  P+   Y  VI + CK G +++A+  + +M    LSPG   +  ++HG         A
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + NV  +   I
Sbjct: 461 EELILEMLDRGICLNTIF--FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +     G + EA      M+   + P   T++ L+ G  K+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 559



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 191/425 (44%), Gaps = 42/425 (9%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R  KP++ T   +  L++ +A+   + +   +LD M + G  PD +VF  L+ A      
Sbjct: 330 RGLKPEITT---YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGK 386

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           V +A  +F +MR++   P+   + +++   CK G++ +A     QM D G  P  +VYN+
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ G     K   A EL+ EM  +G   N   +  +I + C+  ++ E+ + F  M R G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + +V+TY TLI+G+C + K+D   ++L  M+  G+ PN +TY  ++  + K   +E+ +
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 404 ELMGEMRKIGCVPDV-----------------------------------SNYNVVIRLA 428
            L  EM   G  PD+                                   S YN+++   
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK     +A+ ++  +    L     +F +M+   L  G   EA + F      GL+  P
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV--P 684

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            Y T + +  +++    +E    ++  +   GC ++       +  L   G +  A +Y 
Sbjct: 685 NYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTY- 743

Query: 549 LDMMD 553
           L M+D
Sbjct: 744 LSMID 748



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 184/404 (45%), Gaps = 39/404 (9%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF IL+  +A+   V +A+ V  +M + G  P+   +G ++  LCK+  V++A   F++M
Sbjct: 373 VFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 236 -RERFKPSLRHFTSLLYG------W-----------------------------CKEGKL 259
             E   P    + SL++G      W                             CKEG++
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +E++ +   M   G +P+++ YN L++GY   GKM +A +LL  M   G  PN  +Y+ L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C++ +ME+A   F EME SG   D++TY  ++ G  ++R+     E+   + + G 
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 612

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
                TY  I+    K +  ++ +++   +  +    +   +N++I    K+G   EA +
Sbjct: 613 QIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++    +  L P   ++ +M    +GQG L E  + F  M   G       G L  ++  
Sbjct: 673 LFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG--CTVDSGMLNFIVRE 730

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           LL+  ++  A    S I  K   L     +++I  L S G  +E
Sbjct: 731 LLQRGEITRAGTYLSMIDEKHFSLEASTASLFI-DLLSGGKYQE 773



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 153/367 (41%), Gaps = 72/367 (19%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA--- 332
           PD+  Y  L+    + G++   F  L  + +KG   +A ++T L++ LC  ++  +A   
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 333 ---------------------------NRAFVEME---------RSGCEADVVTYTTLIS 356
                                      NR+   +E           G   DVV+YTT+I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           GF K    D+ Y     M+ RGILP+ +TY  I+ A  K + +++ +E++  M K G +P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D   YN ++   C  G+ KEA+    +M +  + P   ++ +++      G  +EA + F
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324

Query: 477 KEMVGRGL-LSAPQYGTL-------------KALLNSLLR-------------------A 503
             M  RGL      YGTL               LL+ ++R                    
Sbjct: 325 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQ 384

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            KV+ A  V+S +  +G   N   +   I  L  +G V++A  Y   M+D  + P    +
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444

Query: 564 AKLMRGL 570
             L+ GL
Sbjct: 445 NSLIHGL 451



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 145/308 (47%), Gaps = 10/308 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE---ADVVTYT 352
           DA  +  E+ R+G   +       +  + R       +R +  M R+G +    D+ TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSR-YNRMARAGADEVTPDLCTYG 91

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL-MGEMRK 411
            LI   C++ ++D  +  L ++I++G   + + +  ++      +   + +++ +  M +
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTDSFVVMVHGFLGQGC 468
           +GC+P+V +YN++++  C     +EA+ + + M         P   S+  +++GF  +G 
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
             +A   + EM+ RG+L  P   T  +++ +L +AQ ++ A +V + +V  G   +   +
Sbjct: 212 SDKAYSTYHEMLDRGIL--PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              +H   S+G  KEA  +   M    V P   T++ LM  L K      A +I + + K
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329

Query: 589 MAAERQIT 596
              + +IT
Sbjct: 330 RGLKPEIT 337


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 233/458 (50%), Gaps = 15/458 (3%)

Query: 141 YRALIKSLSKMRKFG-AVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  +++SL +  +   A+     EM ++   P ++T   +  ++     +  +   +E+ 
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVT---YNTIINGLCKSNELGAGMELF 104

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +E+ K G  PD   +  L+D+LCK   ++EA +L   M  R   P++  ++ L+ G CK 
Sbjct: 105 EELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKV 164

Query: 257 GKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPN 312
           G++ EA+ ++ +M  K     P+I+ YN+ L G  +     +A EL++ +R       P+
Sbjct: 165 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPD 224

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +++ LI  LC+  + +EA     +M   G   +VVTY  L++G CK+ K++R + +++
Sbjct: 225 TVTFSTLIDGLCKCGQTDEACND--DMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIE 282

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
           SM+ +G+ P+ +TY  ++ A  K   ++E +EL+  M   GC P+V  +N +I   CK  
Sbjct: 283 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 342

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
              EA  +  ++    L P   +F +++ G    G   +A   F+EMV + +   P   T
Sbjct: 343 RSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM--QPDVMT 400

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             AL++ L +A +VE A+D+   +   G   NV  + + +H L  +G ++E C +  +M+
Sbjct: 401 FGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMV 460

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            +  +P+  T+  L+  L +      A ++  K++   
Sbjct: 461 SSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFG 498



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 188/430 (43%), Gaps = 51/430 (11%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK----PQLITTEVFVILMRRFASA 187
           PN V     Y  LI  L K+ +      L++EM ++     P +IT   F   +      
Sbjct: 149 PNVV----TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF---LDGLCKQ 201

Query: 188 RMVKKAIEVLDEM--PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH 245
            M  +A E++  +        PD   F  L+D LCK     EA    D +   + P++  
Sbjct: 202 SMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN-DDMIAGGYVPNVVT 260

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +L+ G CK  K+  A  ++  M D G  PD++ Y+ L+  + +  ++ +A ELL  M 
Sbjct: 261 YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 320

Query: 306 RKGCDPNANSYTVLIQALCRMEK-----------------------------------ME 330
            +GC PN  ++  +I  LC+ ++                                    E
Sbjct: 321 SRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFE 380

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A+  F EM     + DV+T+  LI G CK+ +++   +ILD M   G+ PN +TY  ++
Sbjct: 381 QASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLV 440

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               K   +EE  E + EM   GCVP+   Y  ++   C+     +A+ + +++++    
Sbjct: 441 HGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWD 500

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P T ++ ++V G    G   +A    +EMVG+G    P   T  A    L R+  +    
Sbjct: 501 PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKG--HQPDSFTFAACFGGLHRSGNLAGTM 558

Query: 511 DVWSCIVTKG 520
           ++   ++ KG
Sbjct: 559 ELLRVVLAKG 568



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 161/331 (48%), Gaps = 6/331 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  L+     A  +++A  +++ M   G  PD   +  L+DA CK S V EA
Sbjct: 256 PNVVT---YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            +L   M  R   P++  F S++ G CK  +  EA  + +Q+ +    PD V +N L++G
Sbjct: 313 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAG 372

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             + G    A  L +EM  K   P+  ++  LI  LC+  ++E A      M   G   +
Sbjct: 373 ACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 432

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           VVTY  L+ G CKS +I+   E L+ M+  G +P  +TY  ++ A  +    ++ ++L+ 
Sbjct: 433 VVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVS 492

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +++  G  PD   YN+++    K G+ ++A+ V  EM      P + +F     G    G
Sbjct: 493 KLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSG 552

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            L    E  + ++ +G+L  P   T  ++L+
Sbjct: 553 NLAGTMELLRVVLAKGML--PDATTCSSILD 581



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 171/362 (47%), Gaps = 10/362 (2%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVL-VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           S+  +  +L   C+ G+   A  +   +M   G  P IV YN +++G  +  ++    EL
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            +E+ ++G  P+  +Y  LI +LC+   +EEA R    M   GC  +VVTY+ LI+G CK
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCK 163

Query: 361 SRKIDRCYEILDSMIQRG--ILPNQLTYLHIMLAHEKKEELEECVELMGEMR--KIGCVP 416
             +ID   E++  M ++   +LPN +TY   +    K+    E  ELM  +R   +   P
Sbjct: 164 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 223

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D   ++ +I   CK G+  EA N  ++M A    P   ++  +V+G      +  A    
Sbjct: 224 DTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMI 281

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           + MV +G+   P   T   L+++  +A +V+ A ++   + ++GC  NV  +   I  L 
Sbjct: 282 ESMVDKGV--TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC 339

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN-RQIAAEITEKVRKMAAERQI 595
            +    EA    L + +  ++P   TF  L+ G  K  N  Q +A   E V K      +
Sbjct: 340 KSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVM 399

Query: 596 TF 597
           TF
Sbjct: 400 TF 401


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+  L +  K     AL +EM   +   + +  F IL+     A  ++ A+E   +M
Sbjct: 48  YNTLLDGLFRTGKLERAMALFQEMLDRRSHDVIS--FNILVTGLCRAGKIETALEFFRKM 105

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
               C P+   +  L+D LCK + V +A +L + M+ R   P +  +T L+ G CKE K+
Sbjct: 106 DDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 164

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  VL +M DAG  P++V YN+LL G  +  +++DA  L+++M  +GC PN  +Y  L
Sbjct: 165 AAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL 224

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC++ ++++A     +M   G   D++ Y  LI+G CK+ ++D    +L   +  GI
Sbjct: 225 IDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 284

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    +   L+E   L+  ++  GC PDV  Y+ +I   CK G++ EA +
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  M          ++  ++ G    G + EA      MV  G  + P   T  +L+  
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG--TPPSTMTYNSLIKG 402

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC-SYCLDMMDADVMP 558
           L     ++ A ++   +    C  +   + I IH +     V  A   Y  +M+D  V+P
Sbjct: 403 LCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIP 462

Query: 559 QPDTFAKLMRGLKK 572
              T++ L+ GLKK
Sbjct: 463 DHITYSILLEGLKK 476



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 199/409 (48%), Gaps = 4/409 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251
           +A E+ + M    C P    +  LLD L +   ++ A  LF EM +R    +  F  L+ 
Sbjct: 28  RAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDVISFNILVT 87

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C+ GK+  A     +M D    P+++ Y+ L+ G  +  +++ A ELL+ M+ +GC P
Sbjct: 88  GLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSP 146

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT+L+  LC+  K+  A     EM  +GC  ++VTY +L+ G C++R++     ++
Sbjct: 147 DVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALM 206

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M  RG  PN +TY  ++    K   +++   ++ +M   G  PD+  YN++I   CK 
Sbjct: 207 RDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKA 266

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            ++ E++ +     +  + P   ++  +++G      L EAC     +  RG    P   
Sbjct: 267 DQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG--CPPDVI 324

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               L++ L +A KV+ A D++  +   GC+ +V  ++  I  L   G V EA      M
Sbjct: 325 LYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 384

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV-RKMAAERQITFKM 599
           +     P   T+  L++GL  L +   A E+ E++ R   A   +T+ +
Sbjct: 385 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNI 433



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 209/452 (46%), Gaps = 12/452 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN V     Y +LI  L K  +      L E M+  +  P ++T    +  + R     
Sbjct: 7   EPNVV----TYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK-- 60

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            +++A+ +  EM       D   F  L+  LC+   ++ A + F +M +R  P++  ++ 
Sbjct: 61  -LERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSV 118

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G CK  ++ +A  +L  MK  G  PD++ Y  L+ G  +  K+  A+E+L+EM   G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +Y  L+  LCR  ++ +A     +M   GC  +VVTY TLI G CK  ++    
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 238

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  MI +G  P+ + Y  ++    K ++++E + L+      G  PDV  Y+ VI   
Sbjct: 239 AMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 298

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+   L EA  +   +++    P    +  ++ G    G + EA + ++ M G G     
Sbjct: 299 CRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDG--CDA 356

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   L++ L +A +V+ A  + + +V  G   +   +   I  L    H+ EA    
Sbjct: 357 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELV 416

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
            +M  ++  P   T+  L+ G+ ++     AA
Sbjct: 417 EEMERSNCAPSAVTYNILIHGMCRMERVDSAA 448



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 78/348 (22%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K  A W ++ EM      P L+T   +  L+     AR V  A+ ++ 
Sbjct: 151 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT---YNSLLHGLCRARRVSDALALMR 207

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-------------------- 238
           +M   GC P+   +G L+D LCK   VK+A  +  +M ++                    
Sbjct: 208 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 267

Query: 239 ----------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                            KP +  ++S++YG C+  +L EA  +L+ +K  G  PD+++Y+
Sbjct: 268 QVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS 327

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCD-------------------------------- 310
            L+ G  + GK+ +AF+L + M   GCD                                
Sbjct: 328 TLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM 387

Query: 311 ---PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              P+  +Y  LI+ LC +  ++EA     EMERS C    VTY  LI G C+  ++D  
Sbjct: 388 GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSA 447

Query: 368 -YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL-MGEMRKIG 413
             +    MI  G++P+ +TY  ++   +K ++L E   L + +M ++G
Sbjct: 448 ALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 495



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 35/337 (10%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M+D G EP++V YN+L+ G  +  +   A EL + M+   C P+  +Y  L+  L R  K
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 329 MEEANRAFVEME------------------RSG---------------CEADVVTYTTLI 355
           +E A   F EM                   R+G               C  +V+TY+ LI
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G CK+ ++ +  E+L+SM  RG  P+ +TY  ++    K+ ++    E++ EM   GCV
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 180

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P++  YN ++   C+   + +A+ +  +M     +P   ++  ++ G    G + +AC  
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             +M+ +G    P       L+N L +A +V+ +  +    V+ G + +V  ++  I+ L
Sbjct: 241 LADMIDKG--GTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 298

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +  + EAC   L +      P    ++ L+ GL K
Sbjct: 299 CRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 176/316 (55%), Gaps = 2/316 (0%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + F I ++ FA+A  +K A+ V + M  +G +     F CLL AL +    +EA ++FD 
Sbjct: 2   DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDR 61

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           MR+R+ P LR +T+L+  WC    LVEA  V  +M + G +PD+VV+N ++ G  +  + 
Sbjct: 62  MRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR 121

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A ++ + M+ KG  PN  +YT+LI+  C+  KM+ A R F EM+  GC+ DV TYT L
Sbjct: 122 PEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCL 181

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G+  ++++DR   +L+ M Q+G  P+  TY  ++     +   ++   +  +M K G 
Sbjct: 182 LVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGL 241

Query: 415 VPDVSNYNVVIRLACKLG-ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
            P +  YN++++     G        VW EM    + P  +S+ V ++G +  G   EAC
Sbjct: 242 EPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEAC 301

Query: 474 EYFKEMVGRGLLSAPQ 489
           +Y +EM+ +G +  PQ
Sbjct: 302 KYIEEMIQKG-MKTPQ 316



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 172/386 (44%), Gaps = 14/386 (3%)

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           + FK +++ F +        G++  A  V   M+  GF+  +  +N LL   AQ G   +
Sbjct: 2   DAFKIAIKSFAA-------AGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGRE 54

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A ++   MR +   P+  SYT L+ A C    + EA R + EM  +G + DVV + T+I 
Sbjct: 55  ANQVFDRMRDRYA-PDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIE 113

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G  + ++     ++ + M  +G  PN  TY  ++  H K+ +++  +    EM+ +GC P
Sbjct: 114 GLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQP 173

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           DV+ Y  ++        +     +  EM      P   ++  ++     +    +A   +
Sbjct: 174 DVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIY 233

Query: 477 KEMVGRGLLSAPQYGTLKALLNS-LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           K+M+ +GL   P   T   ++ S  L  +   M   VW  +  KG   +V ++T++I+  
Sbjct: 234 KKMIKKGL--EPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGH 291

Query: 536 FSNGHVKEACSYCLDMMDADV-MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA-ER 593
             +G  +EAC Y  +M+   +  PQ D + K      K     I  E+ +KV+     + 
Sbjct: 292 IRHGRPEEACKYIEEMIQKGMKTPQID-YNKFAADFSKAGKPDILYELAQKVKFTGKFDA 350

Query: 594 QITFKMYKRRGERDLKEKAKKQVDGR 619
              F  +  R ++ +K     Q + R
Sbjct: 351 SNVFHQWAERMKKRVKRNVPNQTESR 376



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM  + +AR + +A  V +EM + G +PD  V   +++ L +     EA K+F+ M+
Sbjct: 73  YTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMK 132

Query: 237 ERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P++  +T L+   CK GK+  A     +M+D G +PD+  Y  LL GY    +M 
Sbjct: 133 AKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMD 192

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------ 337
               LL+EM +KGC P+  +Y  LI+ L      ++A R +                   
Sbjct: 193 RVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMM 252

Query: 338 ------------------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                             EM R G   DV +YT  I+G  +  + +   + ++ MIQ+G+
Sbjct: 253 KSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGM 312

Query: 380 LPNQLTY 386
              Q+ Y
Sbjct: 313 KTPQIDY 319



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 3/233 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V+  +I+ L + ++      + E M+ + P       + +L+R       +  A+   +E
Sbjct: 107 VHNTMIEGLLRGQRRPEAVKMFELMKAKGPA-PNVWTYTMLIRDHCKRGKMDMAMRCFEE 165

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M   GC+PD   + CLL        +     L +EM ++   P  R + +L+        
Sbjct: 166 MQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNM 225

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK-MTDAFELLKEMRRKGCDPNANSYT 317
             +A  +  +M   G EP I  YN ++  Y   G+       + +EM RKG  P+ NSYT
Sbjct: 226 PDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYT 285

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           V I    R  + EEA +   EM + G +   + Y    + F K+ K D  YE+
Sbjct: 286 VFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYEL 338



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 81/208 (38%), Gaps = 42/208 (20%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI+   K  K        EEM+    +P + T   +  L+  + +A+ + +   +L
Sbjct: 142 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVAT---YTCLLVGYGNAKRMDRVTALL 198

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM---------------------- 235
           +EM + GC PD   +  L+  L   +   +AA+++ +M                      
Sbjct: 199 EEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLG 258

Query: 236 ---------------RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
                          R+   P +  +T  + G  + G+  EA   + +M   G +   + 
Sbjct: 259 GRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQID 318

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           YN   + +++ GK    +EL ++++  G
Sbjct: 319 YNKFAADFSKAGKPDILYELAQKVKFTG 346


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 200/407 (49%), Gaps = 8/407 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+ +  V +L  +M      P + T     IL+  F   R +  A  VL 
Sbjct: 115 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLN---ILINSFCHLRRLGYAFSVLA 171

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           ++ K GC+PD   F  L+  LC    + EA  LFD+ + E F+P +  + +L+ G CK G
Sbjct: 172 KLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVG 231

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M      P+++ YN ++    +  ++T+AF L  EM  KG  P+  +Y 
Sbjct: 232 NTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYN 291

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI ALC + + +       EM  S    +VV ++T++   CK   I   ++++D MI+R
Sbjct: 292 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 351

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  +M  H  + E++E V++   M   GCVP+V +YN++I   C++  + +A
Sbjct: 352 GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKA 411

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + +  +M    L   T ++  ++HG    G L  A   F EMV  G    P   T + LL
Sbjct: 412 MGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG--QIPDLVTYRILL 469

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + L +   +  A  +   I     + ++  + I I  +   G ++ A
Sbjct: 470 DYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA 516



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 152/318 (47%), Gaps = 10/318 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ V     Y  L+  L K+    A   L+  M ++  +P +I    +  ++      R
Sbjct: 214 QPDVV----TYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIA---YNTIIDSLCKDR 266

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V +A  +  EM   G  PD F +  L+ ALC     K    L +EM   +  P++  F+
Sbjct: 267 QVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS 326

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CKEG +  A  V+  M   G EPD+V Y  L+ G+    +M +A ++   M  K
Sbjct: 327 TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHK 386

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC PN  SY +LI   C++++M++A     +M   G  AD VTY TLI G C   ++   
Sbjct: 387 GCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHA 446

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+  G +P+ +TY  ++    K   L E + L+  +       D+  YN+ I  
Sbjct: 447 IALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDG 506

Query: 428 ACKLGELKEAVNVWNEME 445
            C+ GEL+ A ++++ + 
Sbjct: 507 MCRAGELEAARDLFSNLS 524



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 197/445 (44%), Gaps = 25/445 (5%)

Query: 58  NNTTDTHGSHNEFSH--------DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGL--T 107
           N   D   S N   H        D  K+   + K       L L+ Q     + P +   
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 108 ERVINRCGDAGNLGYRYYMWASK-----QPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
             +IN       LGY + + A       QP+       +  LI+ L    K G    L +
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNT----TFNTLIRGLCVEGKIGEALHLFD 206

Query: 163 EMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           +   E  +P ++T   +  LM           AI +L  M +  C P+   +  ++D+LC
Sbjct: 207 KTIGEGFQPDVVT---YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLC 263

Query: 221 KNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           K+  V EA  LF EM  +   P +  + SL++  C   +      +L +M ++   P++V
Sbjct: 264 KDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVV 323

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           V++ ++    + G +  A +++  M ++G +P+  +YT L+   C   +M+EA + F  M
Sbjct: 324 VFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM 383

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
              GC  +V +Y  LI+G+C+ +++D+   +L+ M  +G++ + +TY  ++        L
Sbjct: 384 VHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRL 443

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           +  + L  EM   G +PD+  Y +++   CK   L EA+ +   +E ++L      + + 
Sbjct: 444 QHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIA 503

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGL 484
           + G    G L  A + F  +  +G 
Sbjct: 504 IDGMCRAGELEAARDLFSNLSCQGF 528



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 166/374 (44%), Gaps = 6/374 (1%)

Query: 223 SSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           +++ +A   F+ M     P S   FT LL    K         +  QM   G  PD+   
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L++ +  + ++  AF +L ++ + GC P+  ++  LI+ LC   K+ EA   F +   
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G + DVVTY TL++G CK         +L SM+Q+   PN + Y  I+ +  K  ++ E
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L  EM   G  PD+  YN +I   C L E K    + NEM  + + P    F  +V 
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               +G +  A +    M+ RG+   P   T  AL++      +++ A  V+  +V KGC
Sbjct: 331 ALCKEGMIAIAHDVVDMMIKRGV--EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 388

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             NV ++ I I+       + +A      M    ++    T+  L+ GL  +   Q A  
Sbjct: 389 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 448

Query: 582 ITEKVRKMAAERQI 595
           +     +M A  QI
Sbjct: 449 L---FHEMVASGQI 459



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/307 (19%), Positives = 126/307 (41%), Gaps = 37/307 (12%)

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
               + DA      M      P+   +T L+ ++ +M+          +M+  G   DV 
Sbjct: 89  HFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVY 148

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T   LI+ FC  R++   + +L                                    ++
Sbjct: 149 TLNILINSFCHLRRLGYAFSVL-----------------------------------AKL 173

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            K+GC PD + +N +IR  C  G++ EA++++++       P   ++  +++G    G  
Sbjct: 174 LKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNT 233

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A    + MV +     P       +++SL + ++V  A +++S ++TKG   +++ + 
Sbjct: 234 SAAIRLLRSMVQKN--CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYN 291

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             IH+L +    K   +   +M+++ +MP    F+ ++  L K     IA ++ + + K 
Sbjct: 292 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 351

Query: 590 AAERQIT 596
             E  + 
Sbjct: 352 GVEPDVV 358



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 41/244 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI +L  + ++  V  L+ EM   K  P ++   VF  ++       M+  A +V+D
Sbjct: 290 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVV---VFSTVVDALCKEGMIAIAHDVVD 346

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT---------- 247
            M K G EPD   +  L+D  C  S + EA K+FD M  +   P++R +           
Sbjct: 347 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQ 406

Query: 248 -------------------------SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                                    +L++G C  G+L  A  +  +M  +G  PD+V Y 
Sbjct: 407 RMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 466

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            LL    +   + +A  LLK +     D +   Y + I  +CR  ++E A   F  +   
Sbjct: 467 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQ 526

Query: 343 GCEA 346
           G  A
Sbjct: 527 GFAA 530


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 230/500 (46%), Gaps = 44/500 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           V+  L+ SL K + +  V +L ++M     +P + T  + +  +   ++   V  A   L
Sbjct: 71  VFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCH-SNRDHVHFAFSAL 129

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            +M K G +P    FG LL+ LC  + + +A KLFDE+ +  F PSL  +T+++ G CK 
Sbjct: 130 GKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKI 189

Query: 257 GKLV-----------------------------------EAKYVLVQMKDAGFEPDIVVY 281
           G                                      EA Y   +M D G  P++V Y
Sbjct: 190 GHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTY 249

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           +++L G+  +G++ +A  L K+M  +   PN  ++T+L+  LC+   + EA R F  M  
Sbjct: 250 SSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTE 309

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           +G E D  TY+ L+ G+C   ++D   ++ D M+ +G  P+   Y  ++  H K   L E
Sbjct: 310 NGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNE 369

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L+ EM      PD   Y+ +++  C+ G  + A  ++ EM +  L P + ++ +++ 
Sbjct: 370 AKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLD 429

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G    G L EA    K M    +   P       L+  +    K+E A++++S +  KG 
Sbjct: 430 GLCKHGHLDEAFRLLKAMQESKI--EPHICIYNILIQGMCNFGKLEAARELFSNLFVKGI 487

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
           + +V  +T+ I  L   G   EAC     M+    +P   T+   ++G  +  +   A  
Sbjct: 488 QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVR 547

Query: 582 ITEKV--RKMAAERQITFKM 599
           + E++  R  +A+   TF+M
Sbjct: 548 LIEEMVGRGFSADSS-TFQM 566



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 177/372 (47%), Gaps = 8/372 (2%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           +  S   Y  +IK L K+        L+++M ++  KP ++    +  ++      R   
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVA---YNTVIDSLCKDRRAN 228

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+    EM   G  P+   +  +L   C    + EA  LF +M  R   P+   FT L+
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILV 288

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CKEG ++EA+ V   M + G EPD   Y+ L+ GY    +M +A +L   M  KG  
Sbjct: 289 DGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFA 348

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+   Y +LI   C+  ++ EA     EM       D VTY+TL+ GFC++ +     ++
Sbjct: 349 PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M   G+LP+ +TY  ++    K   L+E   L+  M++    P +  YN++I+  C 
Sbjct: 409 FKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCN 468

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+L+ A  +++ +    + P   ++ VM+ G L +G   EACE F++MV  G L  P  
Sbjct: 469 FGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCL--PNS 526

Query: 491 GTLKALLNSLLR 502
            T    +   LR
Sbjct: 527 CTYNVAIQGFLR 538



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 169/333 (50%), Gaps = 12/333 (3%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y +++     + +     +L ++M  R   P  +T   F IL+       M
Sbjct: 244 PNVV----TYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVT---FTILVDGLCKEGM 296

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +A  V + M + G EPD + +  L+D  C  S + EA KLFD M  + F PS+R +  
Sbjct: 297 ILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNI 356

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G CK  +L EAK +L +M D    PD V Y+ L+ G+ Q G+   A +L KEM   G
Sbjct: 357 LINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYG 416

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P++ +Y++L+  LC+   ++EA R    M+ S  E  +  Y  LI G C   K++   
Sbjct: 417 LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAAR 476

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELE-ECVELMGEMRKIGCVPDVSNYNVVIRL 427
           E+  ++  +GI P+ +TY  +M++   KE L  E  E+  +M   GC+P+   YNV I+ 
Sbjct: 477 ELFSNLFVKGIQPSVVTYT-VMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQG 535

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             + G+   AV +  EM     S  + +F +++
Sbjct: 536 FLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 178/401 (44%), Gaps = 50/401 (12%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTS 248
           V  A+   +++      P   VF  LL +L K         L  +M     +P++   T 
Sbjct: 50  VADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTI 109

Query: 249 LLYGWCKEGK--LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           L+   C   +  +  A   L +M   G +P  V +  LL+G     K+ DA +L  E+ +
Sbjct: 110 LINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGK 169

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P+  +YT +I+ LC++     A +   +ME  GC+ DVV Y T+I   CK R+ + 
Sbjct: 170 MGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRAN- 228

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
                                             E +    EM   G  P+V  Y+ ++ 
Sbjct: 229 ----------------------------------EAMYFFSEMVDQGIPPNVVTYSSILH 254

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C LG+L EA +++ +M   ++ P T +F ++V G   +G ++EA   F+ M   G+  
Sbjct: 255 GFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGV-- 312

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK---- 542
            P   T  AL++      +++ A+ ++  +V KG     +A ++ ++++  NGH K    
Sbjct: 313 EPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKG-----FAPSVRVYNILINGHCKSRRL 367

Query: 543 -EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            EA +   +M D D+ P   T++ LM+G  +    Q+A ++
Sbjct: 368 NEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 227/460 (49%), Gaps = 10/460 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+ +  K   +     L++EMR +  +P ++T   + +L+    +   V +A+ +L 
Sbjct: 200 YSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVT---YNVLINAMCNEGDVDEALNILS 256

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++P +GC+PD   +  +L +LC +   KE  +LF EM   +  P    F +++   C++G
Sbjct: 257 DLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQG 316

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  V+  M + G  PDIV Y+++L G   +G++ DA ELL  ++  GC P+  +YT
Sbjct: 317 LVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYT 376

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +++ LC +E+ E A     EM  S C  D VT+ T+I+  C+   +DR  ++++ M + 
Sbjct: 377 TVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSEN 436

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ +TY  I+     +  +++ +EL+  ++  GC PD+  +N +++  C +   ++A
Sbjct: 437 GCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDA 496

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M  +   P   +F  ++     +G L++A E  K M   G +  P   T   ++
Sbjct: 497 EQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCI--PNQSTYNIVV 554

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++LL+A K + A  + S +     +L  Y     I ++   G ++EA      M+   + 
Sbjct: 555 DALLKAGKTQEALKLLSGMTNGTPDLITY--NTVISNITKAGKMEEALDLLRVMVSNGLS 612

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
           P   T+  L  G+ +      A  +  +++ M      TF
Sbjct: 613 PDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATF 652



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 179/410 (43%), Gaps = 3/410 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T  F  L+R       V  A+ V D+M   GC P    +  LLDA CK S  ++A  L D
Sbjct: 162 TFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLD 221

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EMR +  +P +  +  L+   C EG + EA  +L  +   G +PD V Y  +L       
Sbjct: 222 EMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSE 281

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  +  EL  EM    C P+  ++  ++ +LC+   ++ A +    M   GC  D+VTY+
Sbjct: 282 RWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYS 341

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +++ G C   ++D   E+L  +   G  P+ + Y  ++      E+ E   ELM EM   
Sbjct: 342 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCS 401

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
            C PD   +N VI   C+ G +  A+ V  +M     +P   ++  ++ G   + C+ +A
Sbjct: 402 DCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDA 461

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            E    +   G    P   T   LL  L    + E A+ +   ++   C  +   +   I
Sbjct: 462 MELLSNLQSYG--CKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVI 519

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            SL   G + +A      M +   +P   T+  ++  L K    Q A ++
Sbjct: 520 TSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKL 569



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 180/394 (45%), Gaps = 11/394 (2%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL++R  S   V  A  V   +   G       +  +++  C+   +++A +L   M   
Sbjct: 103 ILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLISGMP-- 157

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P    F  L+   C  G++ +A  V   M   G  P +V Y+ LL    +      A 
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAM 217

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            LL EMR KGC+P+  +Y VLI A+C    ++EA     ++   GC+ D VTYT ++   
Sbjct: 218 VLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSL 277

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C S +     E+   M      P+++T+  I+ +  ++  ++  ++++  M + GC+PD+
Sbjct: 278 CGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDI 337

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y+ ++   C +G + +AV + + +++    P T ++  ++ G     C IE  E+ +E
Sbjct: 338 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL----CSIEQWEHAEE 393

Query: 479 MVGRGLLS--APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           ++   + S   P   T   ++ SL +   V+ A  V   +   GC  ++  +   I  L 
Sbjct: 394 LMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLC 453

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +   + +A     ++      P   TF  L++GL
Sbjct: 454 NERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGL 487



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 180/378 (47%), Gaps = 13/378 (3%)

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEK 168
           + R  DA  L  R   +  K P+ +     Y  ++K L  + ++     LM EM      
Sbjct: 350 VGRVDDAVELLSRLKSYGCK-PDTI----AYTTVLKGLCSIEQWEHAEELMAEMVCSDCP 404

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P  +T   F  ++       +V +AI+V+++M + GC PD   +  ++D LC    + +A
Sbjct: 405 PDEVT---FNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDA 461

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            +L   ++    KP +  F +LL G C   +  +A+ ++V M  +   PD   +N +++ 
Sbjct: 462 MELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITS 521

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             Q G +  A E LK M   GC PN ++Y +++ AL +  K +EA +    M       D
Sbjct: 522 LCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPD 579

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           ++TY T+IS   K+ K++   ++L  M+  G+ P+ +TY  +     +++  +  + ++ 
Sbjct: 580 LITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLC 639

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            ++ +G  PD + YN ++   C+      A++ +  M ++   P   ++++++     + 
Sbjct: 640 RLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYEC 699

Query: 468 CLIEACEYFKEMVGRGLL 485
            L EA +    +   G+L
Sbjct: 700 LLDEAKQLLVNLCSLGVL 717



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 4/245 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L+K L  + ++     LM  M   + P   TT  F  ++       ++ +AIE L  
Sbjct: 480 FNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATT--FNTVITSLCQKGLLLQAIETLKI 537

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
           M + GC P++  +  ++DAL K    +EA KL   M     P L  + +++    K GK+
Sbjct: 538 MAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG-TPDLITYNTVISNITKAGKM 596

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +L  M   G  PD + Y +L  G  +      A  +L  ++  G  P+A  Y  +
Sbjct: 597 EEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDI 656

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +   C+  + + A   F  M  SGC  D  TY  L+        +D   ++L ++   G+
Sbjct: 657 LLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716

Query: 380 LPNQL 384
           L   L
Sbjct: 717 LDKSL 721


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 219/446 (49%), Gaps = 9/446 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A   PN V     Y A+I  L K  +        E+M      + T   + +++     A
Sbjct: 392 AGCSPNVV----AYTAVIDGLLKAGRIEDGLKNFEDMSGSS-CVPTRTTYTVVIDGLCKA 446

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHF 246
           +M+  A +V ++M + GC PD   +  L+D   K S + EA KL D M  +  +P+   +
Sbjct: 447 QMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTY 506

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            S+++G+CK   + EAK V+ QM++ G EP + ++ +LLS Y   G+  +A+++L EM  
Sbjct: 507 GSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTA 566

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +GC P+   YT LI  L    ++ EA   F  M   GC  D +TY T+I  F K   ++ 
Sbjct: 567 RGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEA 626

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             EIL+ M + G+ P+   Y  +M  + K E +++   +   M   G  P+   +NV++ 
Sbjct: 627 AGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMH 686

Query: 427 LACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              K G+   A +++ EM E   + P   S+ +++ G    G + EA   F+EM+ RG++
Sbjct: 687 GLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGII 746

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P+  T  +L+ SL +A ++  AK +   +V  G   +V A++  I  L  +  V  A 
Sbjct: 747 --PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAW 804

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLK 571
               +MM     P   T+  L RG +
Sbjct: 805 DVFQEMMKRGCAPNEVTYKVLRRGFR 830



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 229/470 (48%), Gaps = 9/470 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +IK L+  ++      L E+++     P ++    +  ++     A  ++  ++  +
Sbjct: 366 YTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVA---YTAVIDGLLKAGRIEDGLKNFE 422

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M    C P    +  ++D LCK   + +A K+F++M ++   P    +T+L+ G+ K  
Sbjct: 423 DMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 482

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA+ +L  M   G EP  V Y +++ G+ ++  + +A E++ +MR +GC+P    +T
Sbjct: 483 KMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFT 542

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+       + EEA +   EM   GC  DV+ YT+LI     + ++     + DSMI++
Sbjct: 543 SLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEK 602

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ LTY  I+    K   +E   E++  M K G  PD   YN ++    KL  + +A
Sbjct: 603 GCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 662

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V++ M A+ + P   +F V++HG    G    A   FKEM+ +  +  P   +   L+
Sbjct: 663 FGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVP-PTLVSYTILI 721

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + L +A +V  A   +  ++ +G     + +T  I+SL   G + EA     DM+   V 
Sbjct: 722 DGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVN 781

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAAERQITFKMYKRRGER 606
           P    ++ L+ GL        A ++  E +++  A  ++T+K+  RRG R
Sbjct: 782 PDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL-RRGFR 830



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 209/450 (46%), Gaps = 34/450 (7%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I++     AR + KAIE+  EMP  GCEP    +  ++  L     + EA K F+ M + 
Sbjct: 25  IVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDN 84

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             +P +  FT+L++G+CK G+  +  ++L+      F PD+ +Y +++ GY + G +   
Sbjct: 85  GCEPDVIAFTTLIHGFCKAGQ-PQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTG 143

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           F++L+EM   GC P+A +Y VLI  LC++ +++EA   F  M +SGC  D VT+ TLI  
Sbjct: 144 FKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEA 203

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
                K+D   E+   MI+RG  P       ++ A  K  +++E  E+   +        
Sbjct: 204 LSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATS 263

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              YN ++   CKLG + + + +  +M      P   ++ ++V GF     L +A E FK
Sbjct: 264 RVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFK 323

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK-------DVWS---------------- 514
            +   G    P   T   ++  L  AQ++E AK       DV S                
Sbjct: 324 LLSSYG--CKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDE 381

Query: 515 -C-----IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
            C     + T GC  NV A+T  I  L   G +++      DM  +  +P   T+  ++ 
Sbjct: 382 ACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVID 441

Query: 569 GLKKLYNRQIAAEITEK-VRKMAAERQITF 597
           GL K      A ++ E+ V+K      IT+
Sbjct: 442 GLCKAQMLPDACKVFEQMVQKGCVPDTITY 471



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 216/466 (46%), Gaps = 40/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +L+    K+ +      L+ +M  E       + + IL+  F+ A  +  A+E+   +
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMV-ECDNFPDIQTYNILVAGFSRANRLDDALELFKLL 325

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
             YGC+P+   +  ++  L     ++EA   FDE  +     +  +T+++ G     ++ 
Sbjct: 326 SSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD-----VISYTTVIKGLADSKRID 380

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +  ++K AG  P++V Y  ++ G  + G++ D  +  ++M    C P   +YTV+I
Sbjct: 381 EACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVI 440

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             LC+ + + +A + F +M + GC  D +TYTTLI GF K+ K+D   ++LD M+ +G  
Sbjct: 441 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 500

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P  +TY  I+    K + + E  E++ +MR+ GC P +  +  ++      G  +EA  V
Sbjct: 501 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 560

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTL------ 493
             EM A   +P    +  ++      G + EA   F  M+ +G    A  YGT+      
Sbjct: 561 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 620

Query: 494 --------------------------KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
                                      +L++  ++ ++V+ A  V+  +V  G + N   
Sbjct: 621 IGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVT 680

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKLMRGLKK 572
           + + +H LF +G    A S   +M++ D V P   ++  L+ GL K
Sbjct: 681 FNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGK 726



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 158/312 (50%), Gaps = 3/312 (0%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA   L +M   G  PD+V  N +L+G  +  K+  A EL  EM   GC+P   SY  +I
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVI 62

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             L  ++KM+EA + F  M  +GCE DV+ +TTLI GFCK+ +    + +L+  ++R   
Sbjct: 63  SGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FR 121

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+   Y  ++  + K  +L+   +++ EM   GC+PD + Y V+I   CKLG + EA  +
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           +  M  +       +F+ ++      G L EACE ++EM+ RG    P      +L+ +L
Sbjct: 182 FERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGY--EPYLEVQDSLIFAL 239

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +A KV+ A +++  +V K    +  A+   +      G V +     L M++ D  P  
Sbjct: 240 CKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDI 299

Query: 561 DTFAKLMRGLKK 572
            T+  L+ G  +
Sbjct: 300 QTYNILVAGFSR 311



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 7/331 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +++    K+        ++ +MR+   +P L    +F  L+  + S    ++A +VL 
Sbjct: 506 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLF---IFTSLLSYYLSKGRAEEAYQVLT 562

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   GC PD  ++  L+D L     V EA  +FD M E+   P    + +++  + K G
Sbjct: 563 EMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIG 622

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +L  M  +G  PD   YN+L+ GY ++ ++  AF +   M   G  PNA ++ 
Sbjct: 623 NVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN 682

Query: 318 VLIQALCRMEKMEEANRAFVEM-ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           VL+  L +  K + A   F EM E+      +V+YT LI G  K+ ++   +     MI 
Sbjct: 683 VLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMID 742

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RGI+P   TY  ++ +  K   + E  +L+ +M K+G  PDV  Y+ +I        +  
Sbjct: 743 RGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDT 802

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           A +V+ EM     +P   ++ V+  GF   G
Sbjct: 803 AWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 833



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA +  KEM   GL+  P       +LN L +A+K++ A +++  + + GCE  + ++  
Sbjct: 3   EALDCLKEMHTTGLM--PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
            I  L S   + EA  +   M+D    P    F  L+ G  K    Q+ 
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 109


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/434 (29%), Positives = 221/434 (50%), Gaps = 15/434 (3%)

Query: 73  DVEKIFRILKKFHSRLPKLELA-LQHSGVVLRP--GLTERVINRCGDAGNLGYRYYMWAS 129
           ++E + ++L+K   R P  ELA L   G+  +P  GL  +V+NR  +       ++ WA 
Sbjct: 96  ELEAVTKVLQK---RYPSPELASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAK 152

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
               Y HS ++Y  ++  L K R F ++  L+EEM + +   +T E    +MRR A AR 
Sbjct: 153 SLTGYRHSPELYNLMVDILGKCRSFDSMSELVEEMARLE-GYVTLETMTKVMRRLARARK 211

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
            + AIE    M K+G + D      L+DAL K  SV+ A K+  E +     S R F  L
Sbjct: 212 HEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVL 271

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++GWC+      A+  +  MK+ GFEPD+  Y N +  Y          ++L+EMR  GC
Sbjct: 272 MHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGC 331

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PNA +YT ++  L +  ++ +A   + +M+  GC AD   Y+++I    K+ ++    +
Sbjct: 332 PPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACD 391

Query: 370 ILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
           + + M ++G++ + +TY   +    AH ++   E  + L+ EM    C P+V  Y+ +++
Sbjct: 392 VFEDMPKQGVVRDVVTYNSMISTACAHSRE---ETALRLLKEMEDGSCKPNVGTYHRLLK 448

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + CK   +K    + + M   ++SP   ++ ++V+     G + +A  + +EMV RG   
Sbjct: 449 MCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGF-- 506

Query: 487 APQYGTLKALLNSL 500
            P+  TLK L   L
Sbjct: 507 TPKPSTLKKLAGEL 520



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 128/268 (47%), Gaps = 6/268 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+    + R F      ME+M++   +P + +   F+     +   R  +K  +VL+
Sbjct: 268 FNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFI---EAYGHERDFRKVDQVLE 324

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM + GC P+   +  ++  L K   +++A +++++M+ +        ++S+++   K G
Sbjct: 325 EMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAG 384

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  V   M   G   D+V YN+++S      +   A  LLKEM    C PN  +Y 
Sbjct: 385 RLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYH 444

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L++  C+ ++M+        M ++    D+ TY+ L++   KS K++  Y  L+ M+ R
Sbjct: 445 RLLKMCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLR 504

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVEL 405
           G  P   T   +    E K  LEE V +
Sbjct: 505 GFTPKPSTLKKLAGELESKSMLEEKVRV 532



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 6/211 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y +++  L K  +      + E+M+ +   +  T  +  ++     A  +K
Sbjct: 333 PNAV----TYTSVMLHLGKAGQLRKALEVYEKMKSDG-CVADTPFYSSMIFILGKAGRLK 387

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLL 250
            A +V ++MPK G   D   +  ++   C +S  + A +L  EM +   KP++  +  LL
Sbjct: 388 DACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLL 447

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
              CK+ ++   K++L  M      PD+  Y+ L++   + GK+ DA+  L+EM  +G  
Sbjct: 448 KMCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFT 507

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           P  ++   L   L     +EE  R    M+R
Sbjct: 508 PKPSTLKKLAGELESKSMLEEKVRVEEWMDR 538



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 107/281 (38%), Gaps = 40/281 (14%)

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G+     +YN ++    +        EL++EM R        + T +++ L R  K E+
Sbjct: 155 TGYRHSPELYNLMVDILGKCRSFDSMSELVEEMARLEGYVTLETMTKVMRRLARARKHED 214

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP-NQLTYLHIM 390
           A  AF  ME+ G + D      LI    K   ++  ++++  +  +G +P +  ++  +M
Sbjct: 215 AIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVV--LEFKGSIPLSSRSFNVLM 272

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               +  + +   + M +M++ G  PDV +Y   I       + ++   V  EM      
Sbjct: 273 HGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRE---- 328

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
                           GC   A  Y   M+  G                  +A ++  A 
Sbjct: 329 ---------------NGCPPNAVTYTSVMLHLG------------------KAGQLRKAL 355

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           +V+  + + GC  +   ++  I  L   G +K+AC    DM
Sbjct: 356 EVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDM 396


>gi|242078797|ref|XP_002444167.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
 gi|241940517|gb|EES13662.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
          Length = 520

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 191/353 (54%), Gaps = 9/353 (2%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           D +   + +  K R+F   WA++  MR     ++T    VILM R+A+A  V KA++  D
Sbjct: 137 DAWHLAVWAAGKARRFDLAWAVVRRMRNRG--VLTGRAMVILMERYAAANEVNKAVKTFD 194

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKE- 256
            M K+  E D+ VF  LL ALCK+ ++++A +L   +R++F P S   F  +L GWC   
Sbjct: 195 VMEKFKVESDQSVFYSLLRALCKSKNIEDAEELL-LLRKKFFPLSAEGFNIILDGWCNVI 253

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             L EAK V  +M +    PD + Y  ++S ++++G + D   +  EM+++G  P    Y
Sbjct: 254 TDLAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGSLFDTLRVYDEMKKRGWIPGIGVY 313

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L+  L R   +++A+  F ++   G + DV TY ++I   C+S K+D    +++SMI 
Sbjct: 314 NSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNSMIVPLCESCKLDEARVVMESMIL 373

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI+P   TY H  L   K+E ++E ++L+ +M++ GC P    + ++      L E   
Sbjct: 374 KGIVPTISTY-HAFL---KQEGIDESLKLLQKMKEDGCGPKSDTFLMLFDKFFLLNESGN 429

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           A+ VWNEM    +SP    ++ +V G +  GC+  A EY+ EM  +G  S  Q
Sbjct: 430 ALRVWNEMRKYKISPVRSHYMTVVEGLVKHGCIPRALEYYDEMKEKGFASDTQ 482


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 229/433 (52%), Gaps = 9/433 (2%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLI 172
           +  DA +L +R  + +   P  +     +  L  +++K +++  V AL ++M + K    
Sbjct: 68  KADDAVDL-FRDMIQSRPLPTVID----FNRLFSAIAKTKQYELVLALCKQM-ESKGIAH 121

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           +     I++  F   R +  A   + ++ K G EPD  +F  LL+ LC    V EA +L 
Sbjct: 122 SIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELV 181

Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           D M E   KP+L    +L+ G C  GK+ +A  ++ +M + GF+P+ V Y  +L+   + 
Sbjct: 182 DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKS 241

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G+   A ELL++M  +    +A  Y+++I  LC+   ++ A   F EME  G +AD++TY
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITY 301

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            TLI GFC + + D   ++L  MI+R I PN +T+  ++ +  K+ +L E  +L+ EM +
Sbjct: 302 NTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ 361

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  P+   YN +I   CK   L+EA+ + + M +    P   +F ++++G+     + +
Sbjct: 362 RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDD 421

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
             E F+EM  RG+++     T   L+    ++ K+E+AK ++  +V++    ++ ++ I 
Sbjct: 422 GLELFREMSLRGVIANTV--TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKIL 479

Query: 532 IHSLFSNGHVKEA 544
           +  L  NG +++A
Sbjct: 480 LDGLCDNGELEKA 492



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 214/421 (50%), Gaps = 6/421 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP LIT    V           V  A+ ++D M + G +P+E  +G +L+ +CK+     
Sbjct: 190 KPTLITLNTLV---NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL 246

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A +L  +M ER  K     ++ ++ G CK+G L  A  +  +M+  GF+ DI+ YN L+ 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G+   G+  D  +LL++M ++   PN  +++VLI +  +  K+ EA++   EM + G   
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + +TY +LI GFCK  +++   +++D MI +G  P+ +T+  ++  + K   +++ +EL 
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM   G + +   YN +++  C+ G+L+ A  ++ EM +  + P   S+ +++ G    
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L +A E F ++    +      G    +++ +  A KV+ A D++  +  KG +L+  
Sbjct: 487 GELEKALEIFGKIEKSKM--ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDAR 544

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           A+ I I  L     + +A      M +    P   T+  L+R      +   AAE+ E++
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604

Query: 587 R 587
           +
Sbjct: 605 K 605



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 164/331 (49%), Gaps = 9/331 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI       ++     L+ +M  RK  P ++T   F +L+  F     +++A ++L 
Sbjct: 301 YNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT---FSVLIDSFVKEGKLREADQLLK 357

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  P+   +  L+D  CK + ++EA ++ D M  +   P +  F  L+ G+CK  
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +  +M   G   + V YN L+ G+ Q GK+  A +L +EM  +   P+  SY 
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+  LC   ++E+A   F ++E+S  E D+  Y  +I G C + K+D  +++  S+  +
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLK 537

Query: 378 GILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           G+  +   Y +IM++   +K+ L +   L  +M + G  PD   YN++IR      +   
Sbjct: 538 GVKLDARAY-NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATT 596

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           A  +  EM+++   P   S V MV   L  G
Sbjct: 597 AAELIEEMKSSGF-PADVSTVKMVINMLSSG 626



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 167/380 (43%), Gaps = 38/380 (10%)

Query: 227 EAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A  LF D ++ R  P++  F  L     K  +      +  QM+  G    I   + ++
Sbjct: 71  DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           + + +  K++ AF  + ++ + G +P+   +  L+  LC   ++ EA      M   G +
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             ++T  TL++G C + K+     ++D M++ G  PN++TY  ++    K  +    +EL
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS----------------- 448
           + +M +     D   Y+++I   CK G L  A N++NEME                    
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310

Query: 449 ------------------LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
                             +SP   +F V++  F+ +G L EA +  KEM+ RG+  AP  
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI--APNT 368

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +L++   +  ++E A  +   +++KGC+ ++  + I I+       + +      +
Sbjct: 369 ITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE 428

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M    V+    T+  L++G 
Sbjct: 429 MSLRGVIANTVTYNTLVQGF 448



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 121/315 (38%), Gaps = 37/315 (11%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K  DA +L ++M +    P    +  L  A+ + ++ E       +ME  G    + T +
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 353 TLISGFCKSRKIDRCY-----------------------------------EILDSMIQR 377
            +I+ FC+ RK+   +                                   E++D M++ 
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P  +T   ++       ++ + V L+  M + G  P+   Y  V+ + CK G+   A
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + +  +ME  ++      + +++ G    G L  A   F EM  +G        T   L+
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF--KADIITYNTLI 305

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
                A + +    +   ++ +    NV  +++ I S    G ++EA     +MM   + 
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365

Query: 558 PQPDTFAKLMRGLKK 572
           P   T+  L+ G  K
Sbjct: 366 PNTITYNSLIDGFCK 380


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 219/468 (46%), Gaps = 16/468 (3%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           LI  L K  K      L+E M  ++  ++    +  L++       + +A  +   M K 
Sbjct: 197 LIDILCKEGKVIEANELLEVMI-QRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKL 255

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-------RFKPSLRHFTSLLYGWCKE 256
           GC PD   +G L+  LC+  ++  A +L  EM         + KP+L  ++ ++ G CK+
Sbjct: 256 GCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 315

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +  EA+ +  +MK  G  PD++ Y  L+ G+   GK   A  L  EM   G  P+  + 
Sbjct: 316 RREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTS 375

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           +VLI  LC+  K+ EAN+    + + GC  DVVT TTL+ G C   +I +  ++   M +
Sbjct: 376 SVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQK 435

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK------IGCVPDVSNYNVVIRLACK 430
            G +PN +T   +M    +   ++  +EL   M        I C P+  +Y+++I   CK
Sbjct: 436 LGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCK 495

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G   EA  ++ EM+A  + P   S+  ++HGF   G   +A   F EMV  G+   P  
Sbjct: 496 CGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGV--QPDV 553

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   L++ L +  KV  A ++   ++ +GC  N   +T  +  L  N  + EA    + 
Sbjct: 554 TTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 613

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK 598
           M     +P   T+  LM+GL +  N + A E+ +K+     +    FK
Sbjct: 614 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 661



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 221/454 (48%), Gaps = 55/454 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K R+      L +EM+ +   P +I+   +  L+  F  +   +KA  + +
Sbjct: 305 YSIIIDGLCKDRREDEARELFKEMKAQGIMPDVIS---YTTLIHGFCLSGKWEKAKCLFN 361

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G +PD      L+D LCK   V EA KL + + +R   P +   T+L+ G C + 
Sbjct: 362 EMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKH 421

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK------GCDP 311
           ++ +A  + ++M+  G  P++V    L+ G  Q G +  A EL K M          C P
Sbjct: 422 RISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 481

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK-------- 363
           NA SY+++I  LC+  + +EA   F EM+  G   DV++YT+LI GFC+S K        
Sbjct: 482 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 541

Query: 364 ---------------------------IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
                                      +    E+L+ MIQRG +PN +TY  ++      
Sbjct: 542 NEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMN 601

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD-- 454
           + + E  +L  +M+K+GC+PDV  Y  +++  C+ G +K A+ +  +M + +   GT+  
Sbjct: 602 DRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 661

Query: 455 ----SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
               S+ +++ G    G   EA E FKEM   G++  P   +  +L++   R+ K+E AK
Sbjct: 662 PDVISYSIIIDGLCKHGREDEARELFKEMKALGVI--PNVISYTSLIHGFCRSGKLEDAK 719

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +++ +V +G +LN   +++ IH     G + +A
Sbjct: 720 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 202/433 (46%), Gaps = 15/433 (3%)

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           E+  ++  ++    +  L++       + +A ++   M K GC PD   +G L+  LC+ 
Sbjct: 34  EVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQT 93

Query: 223 SSVKEAAKLFDEMRE-------RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
             +  A  L  EM         + KP+L  ++ ++ G CK+ +  EA+ +  +MK  G  
Sbjct: 94  GKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMM 153

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD++ Y +L+ G+ + GK   A  L  EM   G   +  + ++LI  LC+  K+ EAN  
Sbjct: 154 PDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANEL 213

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
              M + GC  D+VTY+TLI G C   +I     +  SM + G  P+ + Y  +M    +
Sbjct: 214 LEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQ 273

Query: 396 KEELEECVELMGEMRK------IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
              +   ++L  EM        I C P + +Y+++I   CK     EA  ++ EM+A  +
Sbjct: 274 TGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGI 333

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P   S+  ++HGF   G   +A   F EM+  G+   P   T   L++ L +  KV  A
Sbjct: 334 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI--QPDVTTSSVLIDMLCKKGKVIEA 391

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +   ++ +GC  +V   T  +  L     + +A    L M     MP   T A LM+G
Sbjct: 392 NKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKG 451

Query: 570 LKKLYNRQIAAEI 582
           L +  N +IA E+
Sbjct: 452 LCQSGNIKIALEL 464



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 171/354 (48%), Gaps = 55/354 (15%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEV---- 196
            L+K L    +      L  +M+K    P ++T      LM+    +  +K A+E+    
Sbjct: 412 TLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCAT---LMKGLCQSGNIKIALELHKNM 468

Query: 197 LDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGW 253
           L +   YG  C+P+   +  ++D LCK     EA +LF EM+     P +  +TSL++G+
Sbjct: 469 LSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGF 528

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+ GK  +AKY+  +M D G +PD+  ++ L+    + GK+ +A ELL+ M ++GC PN 
Sbjct: 529 CRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNT 588

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL------------------- 354
            +YT L++ LC  +++ EA + F++M++ GC  DVVTY TL                   
Sbjct: 589 VTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 648

Query: 355 ----------------------ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                                 I G CK  + D   E+   M   G++PN ++Y  ++  
Sbjct: 649 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHG 708

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             +  +LE+   L  EM   G   +   Y+V+I   CK G++ +A  ++ +MEA
Sbjct: 709 FCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 760



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN +     Y  +I  L K  +      L +EM+     P +I+   +  L+  F  + 
Sbjct: 480 KPNAIS----YSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS---YTSLIHGFCRSG 532

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K A  + +EM   G +PD   F  L+D LCK   V EA +L + M +R   P+   +T
Sbjct: 533 KWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYT 592

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM--- 304
           +L+ G C   ++ EA  + ++M+  G  PD+V Y  L+ G  Q G +  A EL K+M   
Sbjct: 593 TLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSD 652

Query: 305 -RRKGCD--PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             + G +  P+  SY+++I  LC+  + +EA   F EM+  G   +V++YT+LI GFC+S
Sbjct: 653 TGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRS 712

Query: 362 RKIDRCYEILDSMIQRGILPNQLTY 386
            K++    + + M+ +G+  N +TY
Sbjct: 713 GKLEDAKHLFNEMVDQGVQLNAVTY 737



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 147/318 (46%), Gaps = 31/318 (9%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M   G +PD+     L+  + + GK+ +A ELL+ M ++GC  +  +Y+ LI+ LC   +
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           + EA + F+ M++ GC  D + Y TL+ G C++ KI                 N   +LH
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKI-----------------NIALHLH 103

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
             + ++  +              I C P + +Y+++I   CK     EA  ++ EM+A  
Sbjct: 104 QEMLNDTSQ------------YGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQG 151

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P   S+  ++HGF   G   +A   F EM+  G+ S     T   L++ L +  KV  
Sbjct: 152 MMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRS--DVTTSSMLIDILCKEGKVIE 209

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A ++   ++ +GC L++  ++  I  L     + EA    + M      P    +  LM+
Sbjct: 210 ANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMK 269

Query: 569 GLKKLYNRQIAAEITEKV 586
           GL +  N   A ++ +++
Sbjct: 270 GLCQTGNINTALQLHQEM 287


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 220/449 (48%), Gaps = 39/449 (8%)

Query: 110 VINRCGDAGNLGYRYYMWA----------SKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           VIN C     +G  + ++           S QP    S+         L KM K G    
Sbjct: 91  VINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF---------LGKMMKLGF--- 138

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
                   +P ++T   F  L+  F     +++A+ ++++M + G +PD  ++  ++D+L
Sbjct: 139 --------EPDIVT---FTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSL 187

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           CKN  V  A  LFD+M     +P +  +TSL+ G C  G+  +A  +L  M     +PD+
Sbjct: 188 CKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDV 247

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           + +N L+  + + GK  DA EL  EM R    PN  +YT LI   C    ++EA + F  
Sbjct: 248 ITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYL 307

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME  GC  DVV YT+LI+GFCK +K+D   +I   M Q+G+  N +TY  ++    +  +
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTDS 455
                E+   M   G  P++  YNV++   C  G++K+A+ ++ +M   E   ++P   +
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWT 427

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           + V++HG    G L +A   F++M  R +       T   ++  + +A KV+ A +++  
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREM--DIGIITYTIIIQGMCKAGKVKNAVNLFCS 485

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + +KG + NV  +T  I  LF  G   EA
Sbjct: 486 LPSKGVKPNVVTYTTMISGLFREGLKHEA 514



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 195/422 (46%), Gaps = 7/422 (1%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           +V ++  YR ++++     +F     L   M + +P L +   F  L+   A  +     
Sbjct: 33  WVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRP-LPSIIDFTKLLNVIAKMKKFDVV 91

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYG 252
           I + D +   G   D +    L++  C++S    A+    +M +  F+P +  FTSL+ G
Sbjct: 92  INLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLING 151

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +C   ++ EA  ++ QM + G +PD+V+Y  ++    + G +  A  L  +M   G  P+
Sbjct: 152 FCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPD 211

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
              YT L+  LC   +  +A+     M +   + DV+T+  LI  F K  K     E+ +
Sbjct: 212 VVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYN 271

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI+  I PN  TY  ++     +  ++E  ++   M   GC PDV  Y  +I   CK  
Sbjct: 272 EMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCK 331

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           ++ +A+ ++ EM    L+  T ++  ++ GF   G    A E F  MV RG+   P   T
Sbjct: 332 KVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGV--PPNIRT 389

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTK---GCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
              LL+ L    KV+ A  ++  +  +   G   N++ + + +H L  NG +++A     
Sbjct: 390 YNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFE 449

Query: 550 DM 551
           DM
Sbjct: 450 DM 451



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +   M ++   P I+ +  LL+  A+M K      L   ++  G   +  +  +L+
Sbjct: 55  EALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLM 114

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              C+  +   A+    +M + G E D+VT+T+LI+GFC   +++    +++ M++ GI 
Sbjct: 115 NCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIK 174

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+ + Y  I+ +  K   +   + L  +M   G  PDV  Y  ++   C  G  ++A ++
Sbjct: 175 PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSL 234

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
              M    + P   +F  ++  F+ +G  ++A E + EM+   +  AP   T  +L+N  
Sbjct: 235 LRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSI--APNIFTYTSLINGF 292

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
                V+ A+ ++  + TKGC  +V A+T  I+       V +A     +M    +    
Sbjct: 293 CMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352

Query: 561 DTFAKLMRGLKKLYNRQIAAEI 582
            T+  L++G  ++    +A E+
Sbjct: 353 ITYTTLIQGFGQVGKPNVAQEV 374



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 169/383 (44%), Gaps = 47/383 (12%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEM--R 165
           +I+     G++ Y   ++  +  NY    DV  Y +L+  L    ++    +L+  M  R
Sbjct: 183 IIDSLCKNGHVNYALSLF-DQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKR 241

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K KP +IT   F  L+  F        A E+ +EM +    P+ F +  L++  C    V
Sbjct: 242 KIKPDVIT---FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCV 298

Query: 226 KEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            EA ++F  M  +   P +  +TSL+ G+CK  K+ +A  +  +M   G   + + Y  L
Sbjct: 299 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER--- 341
           + G+ Q+GK   A E+   M  +G  PN  +Y VL+  LC   K+++A   F +M++   
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREM 418

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   ++ TY  L+ G C + K+++   + + M                    +K E++ 
Sbjct: 419 DGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM--------------------RKREMDI 458

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            +     + +  C               K G++K AVN++  + +  + P   ++  M+ 
Sbjct: 459 GIITYTIIIQGMC---------------KAGKVKNAVNLFCSLPSKGVKPNVVTYTTMIS 503

Query: 462 GFLGQGCLIEACEYFKEMVGRGL 484
           G   +G   EA   F++M   G+
Sbjct: 504 GLFREGLKHEAHVLFRKMKEDGV 526


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 236/480 (49%), Gaps = 27/480 (5%)

Query: 60  TTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGN 119
           T + + SH++FS     +  +L      L  LE AL  +G+     L   V +    +  
Sbjct: 51  TANPNYSHSDFS----TLCNLLSD--PNLKPLETALDQTGIKPETSLLNAVFDHFNSSPK 104

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           L +  ++WA KQP +  S  ++ ++I +L KM++F + W L+     ++  L++++ F I
Sbjct: 105 LLHSLFVWADKQPEFESSTTLFNSVINALGKMKEFDSAWCLV----LDRTGLVSSDTFAI 160

Query: 180 LMRRFASARMVKKAIEV------LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           L+RR+  A M + AI        LD +  Y C+    +   LLD+LCK   V+ A + FD
Sbjct: 161 LIRRYTRAGMPQSAIRTFEYAISLDFICDYNCDA---LLEILLDSLCKEGHVRVAKEYFD 217

Query: 234 EMRER---FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
             ++    + P +R +  +L GW +  KL  A+ + ++MK     P +V Y  L+ GY +
Sbjct: 218 SRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCR 277

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           M ++  A EL+  MR++G +PNA  Y  +I AL    + +E +       +S     + T
Sbjct: 278 MRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTIST 337

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y +L+ G+CK++      ++L  MI RG +P   TY +      K   +EE + L  +M 
Sbjct: 338 YNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMI 397

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + G  PD   +++++++ C+   L  AV +  EM +        +  +++H F       
Sbjct: 398 ESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFE 457

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK---DVWSCIVTKGCELNVYA 527
           EA   F++M+ +G++  PQY T + L + L +   VE A+   D+ S +       N Y+
Sbjct: 458 EAFMEFEDMIQKGIV--PQYLTFQRLNDELRKRGMVERARKLSDMMSSVPHSTNLPNTYS 515


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 220/460 (47%), Gaps = 11/460 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +     A   L+  M    P       +  L+R       V  A+ +LD+M
Sbjct: 114 YNTLVAGYCRYGHLDAARRLIGSM----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDM 169

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + GC+P+   +  LL+A+C+NS  ++A  + DEMR +   P++  +  ++ G C+EG++
Sbjct: 170 LRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRV 229

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+ +L ++   GF+PD V Y  LL G     +  D  EL  EM  K C PN  ++ +L
Sbjct: 230 DDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDML 289

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+  CR   +E A +   +M   GC  +      +I+  CK  ++D  +++L+ M   G 
Sbjct: 290 IRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGC 349

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++    + E  ++  EL+ EM +  C P+   +N  I + C+ G +++A+ 
Sbjct: 350 NPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIM 409

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M     + G  ++  +V+GF  QG +  A E F+ M  +     P   T   LL  
Sbjct: 410 LIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK-----PNTITYTTLLTG 464

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L  A++++ A ++ + ++   C  NV  + + +      G ++EA      MM+    P 
Sbjct: 465 LCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPN 524

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFK 598
             T+  L+ G+ K  + + A E+    V K  +   ITF 
Sbjct: 525 LITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFS 564



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 208/419 (49%), Gaps = 9/419 (2%)

Query: 129 SKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           ++ P+Y    D   Y  L+K L   +++  V  L  EM  EK  +     F +L+R F  
Sbjct: 237 NRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEM-MEKNCMPNEVTFDMLIRFFCR 295

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
             MV++AI+VL++M ++GC  +  +   +++++CK   V +A KL ++M      P    
Sbjct: 296 GGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTIS 355

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T++L G C+  +  +AK +L +M      P+ V +N  +    Q G +  A  L+++M 
Sbjct: 356 YTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC     +Y  L+   C    ++ A   F  M    C+ + +TYTTL++G C + ++D
Sbjct: 416 EHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLD 472

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              E++  M++    PN +T+  ++    +K  LEE +EL+ +M + GC P++  YN ++
Sbjct: 473 GAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLL 532

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               K    ++A+ + + + +  +SP   +F  ++     +  + EA + F  +   G+ 
Sbjct: 533 DGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGM- 591

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             P+      +L  L +  +++ A D ++ +V+ GC  N   + I I  L   G +KEA
Sbjct: 592 -RPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/503 (23%), Positives = 213/503 (42%), Gaps = 81/503 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI+ L    +     +L+++M  R  +P ++T   + +L+         ++A+ VLD
Sbjct: 146 YTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVT---YTVLLEAMCRNSGFEQAMAVLD 202

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG----- 252
           EM   GC P+   +  +++ +C+   V +A +L + +    F+P    +T+LL G     
Sbjct: 203 EMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASK 262

Query: 253 ------------------------------WCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                                         +C+ G +  A  VL QM + G   +  + N
Sbjct: 263 RWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCN 322

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +++   + G++ DAF+LL +M   GC+P+  SYT +++ LCR E+ ++A     EM R+
Sbjct: 323 IVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRN 382

Query: 343 -----------------------------------GCEADVVTYTTLISGFCKSRKIDRC 367
                                              GC   VVTY  L++GFC    ID  
Sbjct: 383 NCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSA 442

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+  SM  +   PN +TY  ++      E L+   EL+ EM +  C P+V  +NV++  
Sbjct: 443 LELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSF 499

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G L+EA+ +  +M     +P   ++  ++ G        +A E    +V +G+  +
Sbjct: 500 FCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGV--S 557

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T  +++  L +  ++E A  ++  +   G       +   +  L     +  A  +
Sbjct: 558 PDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDF 617

Query: 548 CLDMMDADVMPQPDTFAKLMRGL 570
              M+    MP   T+  L+ GL
Sbjct: 618 FAYMVSNGCMPNESTYIILIEGL 640



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 191/428 (44%), Gaps = 41/428 (9%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYV 265
           PD ++   L+  LC+     +AA++         P  +  + +L+ G+C+ G L  A+ +
Sbjct: 74  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 133

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           +  M  A   PD   Y  L+      G++ DA  LL +M R+GC PN  +YTVL++A+CR
Sbjct: 134 IGSMPVA---PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCR 190

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
               E+A     EM   GC  ++VTY  +I+G C+  ++D   E+L+ +   G  P+ ++
Sbjct: 191 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVS 250

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++      +  ++  EL  EM +  C+P+   ++++IR  C+ G ++ A+ V  +M 
Sbjct: 251 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMT 310

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM--------------VGRGLLSAPQYG 491
               +  T    ++++    QG + +A +   +M              V +GL  A ++ 
Sbjct: 311 EHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWD 370

Query: 492 TLKALLNSLLR--AQKVEMAKDVWSCIVTK-----------------GCELNVYAWTIWI 532
             K LLN ++R      E+  + + CI+ +                 GC + V  +   +
Sbjct: 371 DAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALV 430

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAA 591
           +     GH+  A      M      P   T+  L+ GL        AAE + E +R    
Sbjct: 431 NGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCP 487

Query: 592 ERQITFKM 599
              +TF +
Sbjct: 488 PNVVTFNV 495



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 5/246 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y AL+          +   L   M   KP  IT   +  L+    +A  +  A E++ EM
Sbjct: 426 YNALVNGFCVQGHIDSALELFRSM-PCKPNTIT---YTTLLTGLCNAERLDGAAELVAEM 481

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C P+   F  L+   C+   ++EA +L ++M E    P+L  + +LL G  K+   
Sbjct: 482 LRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSS 541

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L  +   G  PD++ +++++   ++  ++ +A +L   ++  G  P A  Y  +
Sbjct: 542 EDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKI 601

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+  +++ A   F  M  +GC  +  TY  LI G      +    ++L  +  RG+
Sbjct: 602 LLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661

Query: 380 LPNQLT 385
           L   LT
Sbjct: 662 LNKNLT 667



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PDV     +IR  C+ G   +A  V    E +       ++  +V G+   G L  A
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
               + ++G  +  AP   T   L+  L    +V  A  +   ++ +GC+ NV  +T+ +
Sbjct: 131 ----RRLIG-SMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLL 185

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  N   ++A +   +M      P   T+  ++ G+
Sbjct: 186 EAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 223


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 210/441 (47%), Gaps = 36/441 (8%)

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           + K+ P   +T  F  L+   A  +     + +  +M  +G  PD +    ++++LC  +
Sbjct: 37  LHKQPPP--STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLN 94

Query: 224 SVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            V  A + L   ++   +P    FT+L+ G C EGK+ EA ++  +M   GF+P++V Y 
Sbjct: 95  RVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYG 154

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++G  +  ++T+AF +  EM  KG  PN  +Y  LI  LC++ + +       EM  S
Sbjct: 155 TLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDS 214

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
               DV T  T++   CK   +   ++++D MI RG+ PN +TY  +M  H  + E++  
Sbjct: 215 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVA 274

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           V++   M    CV +V +YN +I   CK+  + +A+ ++ EM    L+P T ++  ++HG
Sbjct: 275 VKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHG 334

Query: 463 FLGQGCLIEACEYFKEMVGRG--------------------------LLSA-------PQ 489
               G L +A   F EMV RG                          LL A       P 
Sbjct: 335 LCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD 394

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
                 +L+ + RA ++E A+D++S + +KG + NV+ + I IH L   G + EA     
Sbjct: 395 IQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFS 454

Query: 550 DMMDADVMPQPDTFAKLMRGL 570
           +M      P   T+  + RG 
Sbjct: 455 EMNKNGCSPNDCTYNLITRGF 475



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 177/364 (48%), Gaps = 28/364 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+ +  V +L  +M      P + T     IL+  F   R +  A  VL 
Sbjct: 584 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLN---ILINSFCHLRRLGYAFSVLA 640

Query: 199 EMPKYGCEPDEFVFGCLLDALCK-------------NSSV---------KEAAKLFDEM- 235
           ++ K G +PD   +G L++ LCK             NS +         K    L +EM 
Sbjct: 641 KLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 700

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
             +  P++  F++++   CKEG +  A  V+  M   G EPD+V Y  L+ G+    +M 
Sbjct: 701 NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMD 760

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A ++   M  KGC PN  SY +LI   C++++M++A     +M   G  AD VTY TLI
Sbjct: 761 EAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLI 820

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G C   ++     +   M+  G +P+ +TY  ++    K   L E + L+  +      
Sbjct: 821 HGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLD 880

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            D+  YN+ I   C+ GEL+ A ++++ + +  L P   ++ +M+HG   +G L EA + 
Sbjct: 881 ADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKL 940

Query: 476 FKEM 479
           F++M
Sbjct: 941 FRKM 944



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 168/357 (47%), Gaps = 10/357 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QPN V     Y  LI  L K R+    + +  EM  +   P ++T    +  + +    +
Sbjct: 147 QPNVV----TYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 202

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V     +++EM      PD F    ++DALCK   V EA  + D M  R  +P++  + 
Sbjct: 203 HVTT---LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 259

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G C   ++  A  V   M       +++ YN L++GY ++  +  A  L +EM R+
Sbjct: 260 ALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ 319

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  +Y  LI  LC + ++++A   F EM   G   D+VTY TL    CK+R +D+ 
Sbjct: 320 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKA 379

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L ++      P+   Y  I+    +  ELE+  +L   +   G  P+V  YN++I  
Sbjct: 380 MALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHG 439

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            CK G L EA  +++EM     SP   ++ ++  GFL     +   E  +EM+ RG 
Sbjct: 440 LCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGF 496



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 210/500 (42%), Gaps = 56/500 (11%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASAR 188
            PN V     Y +LI  L K+ ++  V  LM EM   K   I  +VF +  ++       
Sbjct: 182 SPNIV----TYNSLIHGLCKLCEWKHVTTLMNEMVDSK---IMPDVFTLNTVVDALCKEG 234

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           MV +A +V+D M   G EP+   +  L+D  C  + V  A K+FD M  +    ++  + 
Sbjct: 235 MVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYN 294

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+CK   + +A Y+  +M      P+ V YN L+ G   +G++ DA  L  EM  +
Sbjct: 295 TLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 354

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y  L   LC+   +++A      +E S  + D+  YTT++ G C++ +++  
Sbjct: 355 GQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 414

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++  ++  +G+ PN  TY  ++    K+  L E  +L  EM K GC P+   YN++ R 
Sbjct: 415 RDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRG 474

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE------------- 474
             +  E    + +  EM A   S    +  ++V G L    L ++ +             
Sbjct: 475 FLRNNEALRTIELLEEMLARGFSVDVSTTTLLV-GMLSDDGLDQSVKQILCKPSSSSRPS 533

Query: 475 ----------YFKEMVGRGLLSAPQYGTLKALLNSLLR-------AQKVEMAKDVWSCIV 517
                     +           +P + TL   L+S  R          V+  K + S   
Sbjct: 534 GTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAK 593

Query: 518 TK---------------GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
            K               G   +VY   I I+S      +  A S    ++     P   T
Sbjct: 594 MKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVT 653

Query: 563 FAKLMRGLKKLYNRQIAAEI 582
           +  LM GL K+  + I+ +I
Sbjct: 654 YGTLMNGLCKMITKGISPDI 673



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 173/389 (44%), Gaps = 47/389 (12%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           +  A+   + M      P    F  LL ++ K         L  +M      P +     
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 621

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  +C   +L  A  VL ++   GF+PD+V Y  L++G             L +M  KG
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNG-------------LCKMITKG 668

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y  LI ALC + + +       EM  S    +VV ++T++   CK   I   +
Sbjct: 669 ISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAH 728

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +++D MI+RG+ P+ +TY  +M  H  + E++E V++   M   GCVP+V +YN++I   
Sbjct: 729 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 788

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG----- 483
           C++  + +A+ +  +M    L   T ++  ++HG    G L  A   F EMV  G     
Sbjct: 789 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 848

Query: 484 ---------------------LLSAPQYGTLKA-------LLNSLLRAQKVEMAKDVWSC 515
                                LL A +   L A        ++ + RA ++E A+D++S 
Sbjct: 849 VTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSN 908

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + +KG + +V  + I IH L   G + EA
Sbjct: 909 LSSKGLQPDVRTYNIMIHGLCKRGLLDEA 937



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 126/297 (42%), Gaps = 49/297 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI +L  + ++  V  L+ EM   K  P ++   VF  ++       M+  A +V+D
Sbjct: 676 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVV---VFSTVVDALCKEGMIAIAHDVVD 732

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M K G EPD   +  L+D  C  S + EA K+FD M  +   P++R +  L+ G+C+  
Sbjct: 733 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQ 792

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A  +L QM   G   D V YN L+ G   +G++  A  L  EM   G  P+  +Y 
Sbjct: 793 RMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 852

Query: 318 VL-----------------------------------IQALCRMEKMEEANRAFVEMERS 342
           +L                                   I  +CR  ++E A   F  +   
Sbjct: 853 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSK 912

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN--------QLTYLHIML 391
           G + DV TY  +I G CK   +D   ++   M +  I  N         L Y  IML
Sbjct: 913 GLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTSSRNQKSLIYQKIML 969



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 49/319 (15%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  V +N LL+  A+    +    L ++M   G  P+  +  ++I +LC + +++ A  A
Sbjct: 43  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G C   KI     + D MI  G  PN             
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPN------------- 149

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                                 V  Y  +I   CK  ++ EA N+++EM    +SP   +
Sbjct: 150 ----------------------VVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVT 187

Query: 456 FVVMVHGFLGQGCLIEACEY------FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  ++HG      L + CE+        EMV   ++  P   TL  ++++L +   V  A
Sbjct: 188 YNSLIHG------LCKLCEWKHVTTLMNEMVDSKIM--PDVFTLNTVVDALCKEGMVAEA 239

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            DV   ++ +G E NV  +   +        V  A      M+  D +    ++  L+ G
Sbjct: 240 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 299

Query: 570 LKKLYNRQIAAEITEKVRK 588
             K+ +   A  + E++ +
Sbjct: 300 YCKIQSVDKAMYLFEEMSR 318


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 202/408 (49%), Gaps = 21/408 (5%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS- 149
           +E AL   G+ L   L    ++R      +  R++ WA  Q +Y H    Y  ++  LS 
Sbjct: 10  MENALGQLGIPLSTPLVTGGLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSS 69

Query: 150 ---KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV-------KKAIEVLDE 199
              K+++F  V  ++E M++    ++  EV ++++R++    +        KK I V  +
Sbjct: 70  TRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKYTEKYLTHMQKFAKKKRIRVKTQ 129

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
           +       +   F  LLDALCK   V++A  L+ +MR+  KP+   +  L++GWC+    
Sbjct: 130 L-------EINAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVRNP 182

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC---DPNANSY 316
                +L +M + G  PD   YN  +  Y + G +T+A +L + MR KG     P A +Y
Sbjct: 183 TRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTY 242

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            ++I AL + ++ME+  +    M  SGC  DV TY  +I G C   KID  Y+ L+ M  
Sbjct: 243 AIIIVALAQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGN 302

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +   P+ +TY   +      ++ E+ ++L G M ++ C+P V  YN++I +  ++ +   
Sbjct: 303 KSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDG 362

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           A   W E++     P TD++ VM+ G      + +AC   +E++  G+
Sbjct: 363 AFETWQEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGV 410



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 140/317 (44%), Gaps = 10/317 (3%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           +I  +N LL    +   + DA  L K+MR K   PNA +Y +L+   CR+       +  
Sbjct: 131 EINAFNLLLDALCKCCLVEDAESLYKKMR-KTVKPNAETYNILVFGWCRVRNPTRGMKLL 189

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIMLAH 393
            EM   G   D  TY T I  +CK+  I    ++ + M  +G     P   TY  I++A 
Sbjct: 190 EEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTYAIIIVAL 249

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            + + +E+C +L+G M   GC+PDV+ Y  +I   C  G++ EA     EM   S  P  
Sbjct: 250 AQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPD- 308

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGR--GLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              +V  + FL   C  +  E   ++ GR   L   P   T   L++        + A +
Sbjct: 309 ---IVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFE 365

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
            W  I  +GC  +   + + I  LF+   +++AC    ++++  V      F   +  L 
Sbjct: 366 TWQEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGVKLPYKKFDSFLMQLS 425

Query: 572 KLYNRQIAAEITEKVRK 588
            + + Q    ++E ++K
Sbjct: 426 VIGDLQAIHRLSEHMKK 442


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 220/454 (48%), Gaps = 7/454 (1%)

Query: 145 IKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           I+ L +  +     AL+E M     P ++T   +  LMR       V++A + L  M   
Sbjct: 157 IRGLCEGGRLEEAVALVESMDAYIAPDVVT---YNTLMRGLCKDSKVQEAAQYLRRMMNQ 213

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           GC PD+F +  ++D  CK   ++EA +L  D + + F P    + SL+ G C EG +  A
Sbjct: 214 GCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERA 273

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +  + +    +PD+VVYN+L+ G  + G +  A +++ EM   GC P+  +Y ++I  
Sbjct: 274 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVING 333

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+M  + +A     +    G   DV T+ T+I G+CK  K+D   ++++ M   GI P+
Sbjct: 334 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPD 393

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++    K  + +E  E   EM   GC P+   YN++I   CK+ +L+EA  V  
Sbjct: 394 AITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 453

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M    L P T SF  ++HGF   G L  A   F+++  +G  +     T   L+ +   
Sbjct: 454 RMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TFNILIGAYSS 511

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
              ++MA+ ++  +++KG + ++Y + + +       +V  A  +  +M+    +P   T
Sbjct: 512 KLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMAT 571

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           F +++  L   +    A  I   + +M    ++ 
Sbjct: 572 FGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEVV 605



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 184/378 (48%), Gaps = 6/378 (1%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY--G 252
            + DEM +    PD   F  +L ALC+   + E+  L  ++ +R   S+  FT  ++  G
Sbjct: 101 HLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKR-GMSVNKFTCNIWIRG 159

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            C+ G+L EA   LV+  DA   PD+V YN L+ G  +  K+ +A + L+ M  +GC P+
Sbjct: 160 LCEGGRLEEA-VALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPD 218

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y  +I   C+ + ++EA     +    G   D VTY +LI+G C    ++R  E+ +
Sbjct: 219 DFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFN 278

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
               + + P+ + Y  ++    ++  +   +++M EM + GC PD+  YN+VI   CK+G
Sbjct: 279 EAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMG 338

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + +A  V N+       P   +F  M+ G+  +  L  A +  + M   G+  AP   T
Sbjct: 339 NISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGI--APDAIT 396

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             ++LN L +A K +   + +  ++ KGC  N   + I I +      ++EA    + M 
Sbjct: 397 YNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMS 456

Query: 553 DADVMPQPDTFAKLMRGL 570
              ++P   +F  L+ G 
Sbjct: 457 QDGLVPDTISFNTLIHGF 474



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 177/343 (51%), Gaps = 12/343 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP L+   V+  L++      ++  A++V++EM + GC PD + +  +++ LCK  ++ +
Sbjct: 286 KPDLV---VYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISD 342

Query: 228 AAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           AA +  D + + + P +  F +++ G+CK  KL  A  ++ +M   G  PD + YN++L+
Sbjct: 343 AAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLN 402

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  + GK  +  E  +EM  KGC PNA +Y +LI+  C++ ++EEA+   V M + G   
Sbjct: 403 GLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVP 462

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D +++ TLI GFC++  +D  Y +   + ++G      T+  ++ A+  K  ++   ++ 
Sbjct: 463 DTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIF 522

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
           GEM   G  PD+  Y V++  +CK   +  A     EM +    P   +F  +++     
Sbjct: 523 GEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMN 582

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
             + EA      MV        + G +  +++++L   K E+A
Sbjct: 583 HRVSEAVAIIHIMV--------RMGVVPEVVDTILSTDKKEIA 617



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 179/436 (41%), Gaps = 38/436 (8%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M  +GC P    +  ++DAL   +   +A K++  M      P  R  T  +  +C  G+
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +L  + + G +   + Y  ++ G    G   DA  L  EM R+   P+  ++  
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNN 120

Query: 319 LIQALCRMEKMEEANRAFVEMERSG---------------CEA----------------- 346
           ++ ALC+   + E+     ++ + G               CE                  
Sbjct: 121 VLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYI 180

Query: 347 --DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             DVVTY TL+ G CK  K+    + L  M+ +G +P+  TY  I+  + K++ L+E  E
Sbjct: 181 APDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ +    G VPD   Y  +I   C  G+++ A+ ++NE +A  L P    +  +V G  
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLC 300

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            QG ++ A +   EMV  G    P   T   ++N L +   +  A  V +  + KG   +
Sbjct: 301 RQGLILHALQVMNEMVEDG--CHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPD 358

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL-KKLYNRQIAAEIT 583
           V+ +   I        +  A      M    + P   T+  ++ GL K    +++     
Sbjct: 359 VFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFE 418

Query: 584 EKVRKMAAERQITFKM 599
           E + K      IT+ +
Sbjct: 419 EMILKGCRPNAITYNI 434


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 212/436 (48%), Gaps = 10/436 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +LSK R       ++  M K    P  IT      L+  + S+     AI V  
Sbjct: 241 YNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS---LLHGYCSSGKPNDAIGVFK 297

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G EPD F +  L+  LCKN    EA K+FD M +R  KP+   + +LL+G+  EG
Sbjct: 298 RMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEG 357

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LV+  ++L  M   G +PD  ++N L+  Y + GK+ DA  L  +MRR+G +P+  +Y 
Sbjct: 358 SLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYG 417

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +++ ALC + K+++A   F  +   G   D V +  LI G C   K D+  E+   MI R
Sbjct: 418 IVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGR 477

Query: 378 GILPNQLTYLHIMLAHEKKEEL-EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           GI PN + + + +L H  KE +      +   M ++    DV  YN +I   C  G++ E
Sbjct: 478 GICPNNI-FFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDE 536

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +   M    + P   ++  M++G+   G + +A   F++M  +G+   P   T   +
Sbjct: 537 AAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGV--NPGIVTYSTI 594

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L  L +A++   AK+++  ++  G + ++  + I +  L  N    +A     ++   D 
Sbjct: 595 LQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDF 654

Query: 557 MPQPDTFAKLMRGLKK 572
             +  TF  ++  L K
Sbjct: 655 HLENRTFNIMIDALLK 670



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 197/436 (45%), Gaps = 45/436 (10%)

Query: 177 FVILMRRFASARMVKKAIEV-LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF--- 232
           F  L++     +   +A+++ L  MP  GC P+ F +  LL  LC  +  ++A  L    
Sbjct: 129 FSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTM 188

Query: 233 ---DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV-QMKDAGFEPDIVVYNNLLS-- 286
              D+ R  + P +  + +++ G  +EG+ ++  Y L  QM D G  PD+V YN+++S  
Sbjct: 189 MVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISAL 248

Query: 287 ---------------------------------GYAQMGKMTDAFELLKEMRRKGCDPNA 313
                                            GY   GK  DA  + K M R G +P+ 
Sbjct: 249 SKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDV 308

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  L+  LC+  +  EA + F  M + G + +  TY TL+ G+     + + + +LD 
Sbjct: 309 FTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDM 368

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M++ GI P+   +  ++  + K  ++++ + L  +MR+ G  PD   Y +V+   C +G+
Sbjct: 369 MVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGK 428

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           + +A+  +  + +  L+P    F  ++HG   +    +A E   EM+GRG+   P     
Sbjct: 429 VDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGI--CPNNIFF 486

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             LLN L +   V  AK+++  +V    + +V  +   I     +G V EA      M+ 
Sbjct: 487 NTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVL 546

Query: 554 ADVMPQPDTFAKLMRG 569
             V P   T+  ++ G
Sbjct: 547 DGVKPNEVTYNTMING 562



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 195/469 (41%), Gaps = 49/469 (10%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP++     ++  LI + +K  K      L  +MR++   P  +T   + I+M       
Sbjct: 375 QPDHY----IFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVT---YGIVMDALCMVG 427

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V  A+     +   G  PD  VF  L+  LC      +A +L  EM  R   P+   F 
Sbjct: 428 KVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFN 487

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +LL   CKEG +  AK +   M     + D++ YN L+ GY   GK+ +A +LL+ M   
Sbjct: 488 TLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLD 547

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +Y  +I   C+  ++E+A   F +M   G    +VTY+T++ G  ++R+    
Sbjct: 548 GVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAA 607

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+   MI+ GI                               K     D+  YN+++  
Sbjct: 608 KELYLWMIKSGI-------------------------------KF----DIGTYNIILLG 632

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+     +A+ ++  +          +F +M+   L  G   EA + F  ++ RGL+  
Sbjct: 633 LCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLV-- 690

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   ++ SL+    +E   D++  +   GC  N       +  L   G V++A  Y
Sbjct: 691 PNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVY 750

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK-LYNRQIAAEITEKVRKMAAERQI 595
              + + +   +  T   L+  +    Y++ I A I EK R +   R +
Sbjct: 751 LSKIDENNFSLEASTAESLVLLVSSGKYDQHINA-IPEKYRPVVKTRAV 798


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 212/411 (51%), Gaps = 10/411 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y AL+  L K  +     A++E+M  EK    T + + +++   + A  V++A  +  +M
Sbjct: 80  YTALVDGLLKAGRLDEAMAVLEQM-VEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDM 138

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-----FKPSLRHFTSLLYGWCK 255
              GC PD FV+  L+  LCK+   +EA  L+ E   R       P +  +TSL+ G CK
Sbjct: 139 LGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCK 198

Query: 256 EGKLVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            G+++EA+ V   +  + GF PD V Y +++ G  ++G++ +  E   EMR +G +P+A 
Sbjct: 199 AGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAV 258

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y  LI    + + + +A+R + +M +SG     VTY  ++ G CK+ ++   Y    +M
Sbjct: 259 TYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAM 318

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            +RG +   +TY  +M     +  +   VEL   M   GC P++ +YN++IR  C+ G+L
Sbjct: 319 EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKL 378

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ-GCLIEACEYFKEMVGRGLLSAPQYGTL 493
            +A   + ++    L P   +F   +HG   +   + +  E F+ MV +G  ++P   + 
Sbjct: 379 AKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQG--TSPNLHSY 436

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             L++ + RA  +E+A +++  +V++G   +V  +   I  L   G V EA
Sbjct: 437 SILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEA 487



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 195/400 (48%), Gaps = 8/400 (2%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F +++      + + +A  VL+   + GCEPD   +   +D LCK   V +A +L  +M 
Sbjct: 10  FTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMD 69

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E +  P+   +T+L+ G  K G+L EA  VL QM + G  P +  Y  ++ G ++ G++ 
Sbjct: 70  EKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVE 129

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM----ERSGCEADVVTY 351
           +A  +  +M   GC P+A  YT LI+ LC+  K EEA   + E       +    DVVTY
Sbjct: 130 EARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTY 189

Query: 352 TTLISGFCKSRKIDRCYEILDS-MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           T+LI G CK+ +I    ++ D   ++RG +P+ +TY  I+    K   +EE  E   EMR
Sbjct: 190 TSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMR 249

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             G  PD   Y  +I    K   + +A  V+ +M  +     T ++ +++ G    G + 
Sbjct: 250 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVA 309

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA   F  M  RG ++     T  AL++       V  A +++  ++ +GCE N+ ++ I
Sbjct: 310 EAYATFLAMEERGCVATVV--TYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNI 367

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            I  L   G + +A  Y   ++   + P   TF   + GL
Sbjct: 368 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGL 407



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 175/372 (47%), Gaps = 8/372 (2%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           C PD   F  +++ LC+   + EA  + +  +R   +P    +   + G CK  ++ +A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +L +M +    P  V Y  L+ G  + G++ +A  +L++M  KG  P   +YTV+I  L
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR----GI 379
            +  ++EEA R FV+M  +GC  D   YT LI G CKS K +  Y +      R      
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELM-GEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           +P+ +TY  ++    K   + E  ++   E  + G +PD   Y  +I   CKLG ++E  
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 242

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
             ++EM      P   ++  ++ GF+    + +A   +++M+  G + +    T   +L+
Sbjct: 243 ERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTV--TYNIILD 300

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A +V  A   +  +  +GC   V  ++  +    S G+V  A      M+D    P
Sbjct: 301 GLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEP 360

Query: 559 QPDTFAKLMRGL 570
              ++  ++RGL
Sbjct: 361 NLVSYNIIIRGL 372



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 159/347 (45%), Gaps = 7/347 (2%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P +  FT ++ G C+E +L EA  VL +   AG EPD V YN  + G  +  ++ DAF+L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           LK+M  K C P   +YT L+  L +  +++EA     +M   G    + TYT +I G  K
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM----RKIGCVP 416
           + +++    I   M+  G  P+   Y  ++    K  + EE   L  E          VP
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 417 DVSNYNVVIRLACKLGELKEAVNVW-NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           DV  Y  +I   CK G + EA  V+ +E       P   ++  ++ G    G + E CE 
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 244

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F EM  RG    P   T  AL++  ++A+ +  A  V+  ++  G  ++   + I +  L
Sbjct: 245 FHEMRNRGY--EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGL 302

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
              G V EA +  L M +   +    T++ LM G     N   A E+
Sbjct: 303 CKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVEL 349



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  ++TV+I  LCR ++++EA        R+GCE D VTY   I G CK+ ++D  +
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++L  M ++  LP  +TY  ++    K   L+E + ++ +M + G  P +  Y VVI   
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG--LLS 486
            K G ++EA  ++ +M      P    +  ++ G    G   EA   +KE   R     +
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSC-IVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            P   T  +L++ L +A ++  A+ V+    V +G   +   +T  I  L   G V+E C
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 242

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
               +M +    P   T+A L+ G  K
Sbjct: 243 ERFHEMRNRGYEPDAVTYAALIDGFMK 269



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + ILM     A  ++ A+E+  EM   G  PD  VF  L+  LC    V EA ++F E+ 
Sbjct: 436 YSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELE 495

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
            R  P    + SLL G  +  ++ EA+ +   MK  G  P
Sbjct: 496 RRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAP 535


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 139/552 (25%), Positives = 253/552 (45%), Gaps = 50/552 (9%)

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL 171
           N C D     +   +  + +P+ V     +   + S +K +++  V +L  +M   +   
Sbjct: 71  NVCVDDALASFYRMVRINPRPSVVE----FGKFLGSFAKKKQYSTVVSLCNQMDLFR--- 123

Query: 172 ITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           +T  V+   IL+        V  ++ VL +M K G  PD   F  L++ LC    +KEA 
Sbjct: 124 VTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAV 183

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEG------------------------------- 257
           +LF+EM +R  +P++  +T+++ G CK G                               
Sbjct: 184 ELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSL 243

Query: 258 ---KLV-EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
              +LV +A   L +M + G  P++  YN+++ G+  +G++ +A  L KEM  +   PN 
Sbjct: 244 CKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNT 303

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++T+L+  LC+   + EA   F  M   G E D+ TY  L+ G+C  R ++   ++ + 
Sbjct: 304 VTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEI 363

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           MI++G  P   +Y  ++  + K   ++E   L+ EM      PD   Y+ +++  C+LG 
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGR 423

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            KEA+N++ EM +    P   ++V+++ GF   G L EA +  K M  + L   P     
Sbjct: 424 PKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL--EPNIVHY 481

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+  +  A K+E+AK+++S +   G   ++  +T+ I  L   G   EA      M D
Sbjct: 482 TILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMED 541

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKMYKRRGERD--LKE 610
              +P   ++  +++G  +  +   A   I E V K  +    TF+M      +D  + +
Sbjct: 542 DGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEIISQ 601

Query: 611 KAKKQVDGRKRR 622
             +    GRK +
Sbjct: 602 FMRGSSQGRKMK 613


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 210/405 (51%), Gaps = 10/405 (2%)

Query: 141 YRALIKSLSKMRKFGAVWAL---MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +  L+ +L +++ +G V +L   +E +R E+        F IL+  F+  + V  A  VL
Sbjct: 87  FDKLLSALVRIKHYGTVLSLSKRIELLRIERDVF----HFNILINCFSRLQRVDFAFSVL 142

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            ++ K G EPD   F  L++ LC       A + FDEM    ++P+L  + +++ G+CK 
Sbjct: 143 GKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKI 202

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK   A  +L +M  AG  PDIV+YN ++ G  +   +++A ++  E++ KG  P+  +Y
Sbjct: 203 GKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTY 262

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           ++L+  LC  ++ EEA+  F EM       DVVT+  L+   CK   +     I+  MI+
Sbjct: 263 SILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIE 322

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ PN  TY  +M  +  + ++ E   +   M   GC+P+V +YN++I   CK   + E
Sbjct: 323 KGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDE 382

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +++EM    L P T ++  ++ G    G   EA E FK+M  +G   +P   T   L
Sbjct: 383 ARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQG--CSPDLVTCTIL 440

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
           L+SL +   ++ A  ++  +     + N+  + I I +++ +G +
Sbjct: 441 LDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 158/336 (47%), Gaps = 2/336 (0%)

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           R +  + HF  L+  + +  ++  A  VL ++   GFEPD V +++L++G     K   A
Sbjct: 114 RIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARA 173

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E   EM   G  PN ++Y  +I+  C++ K   A     +M+++G   D+V Y T+I G
Sbjct: 174 MEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDG 233

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK R +    +I   +  +G+ P+  TY  +M      ++ EE   L  EM  +  +PD
Sbjct: 234 LCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPD 293

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +N+++   CK G L EA  +   M    + P   ++  +++G+  Q  + EA   F 
Sbjct: 294 VVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFD 353

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            M+ +G +  P   +   L+N   +AQ+++ A++++  +  +G   N + +   I  L  
Sbjct: 354 AMITKGCM--PNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQ 411

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            G   EA     DM      P   T   L+  L KL
Sbjct: 412 AGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKL 447



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 142/328 (43%), Gaps = 33/328 (10%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P IV ++ LLS   ++        L K +     + +   + +LI    R+++++ A   
Sbjct: 82  PCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSV 141

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G E D VT+++LI+G C   K  R  E  D M+  G  PN  TY  I+    K
Sbjct: 142 LGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCK 201

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +    V L+ +M K G  PD+  YN +I   CK   + EA+++++E++   + P   +
Sbjct: 202 IGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFT 261

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVG-------------------RGLLS---------- 486
           + +++HG        EA   F EM+                     G+LS          
Sbjct: 262 YSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMI 321

Query: 487 ----APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
                P Y T  +L+N      KV  A+ V+  ++TKGC  NV ++ I I+       + 
Sbjct: 322 EKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRID 381

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
           EA     +M    ++P    +  L+ GL
Sbjct: 382 EARELFDEMSFRGLIPNTFNYNTLISGL 409



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L    +     AL  EM      P ++T   F IL+ +     M+ +A  ++ 
Sbjct: 262 YSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVT---FNILVDKLCKEGMLSEAQGIIK 318

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G EP+   +  L++  C  + V EA  +FD M  +   P++  +  L+ G+CK  
Sbjct: 319 IMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQ 378

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+ +  +M   G  P+   YN L+SG  Q G+  +A EL K+M+ +GC P+  + T
Sbjct: 379 RIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCT 438

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +L+ +LC++  ++ A R F  M+ S  + ++VTY  LI    KS KI R
Sbjct: 439 ILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKIYR 487



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 124/280 (44%), Gaps = 2/280 (0%)

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
            +  + DA      M  K   P    +  L+ AL R++           +E    E DV 
Sbjct: 61  SLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVF 120

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            +  LI+ F + +++D  + +L  +I+ G  P+ +T+  ++     +++    +E   EM
Sbjct: 121 HFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEM 180

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  P++  YN +I+  CK+G+   AV +  +M+ A   P    +  ++ G      +
Sbjct: 181 VASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLV 240

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA + F E+ G+G+   P   T   L++ L  + + E A  +++ +++     +V  + 
Sbjct: 241 SEALDIFSEIKGKGV--RPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFN 298

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           I +  L   G + EA      M++  V P   T+  LM G
Sbjct: 299 ILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNG 338


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 213/433 (49%), Gaps = 7/433 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +   I+ L +         L+E +  E   P +I+   +  L+  F     + +A   L 
Sbjct: 254 FNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVIS---YNTLICGFCKHSKLVEAECYLH 310

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEG 257
           +M   G EP+EF +  +++  CK   ++ A K+  D M + F P    ++SL+ G C +G
Sbjct: 311 KMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDG 370

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  V  +  + GF+  I++YN L+ G ++ G +  A +L+K+M   GC P+  +Y 
Sbjct: 371 DMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +++  LC+M  + +AN    +    GC  D+ T+ TLI G+CK R +D+  EILD+M+  
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  ++    K  +L+  V+    M + GC P++  YN++I   CK  ++ EA
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + ++ EM+   L+P   +   ++ G    G L +A E F  +      S         ++
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST-AIFNIMI 609

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N+      V MA+ ++  +    C  + Y + + I S    G++  A ++ L+ +   ++
Sbjct: 610 NAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLV 669

Query: 558 PQPDTFAKLMRGL 570
           P   T  K++  L
Sbjct: 670 PSFTTCGKVLNCL 682



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 189/380 (49%), Gaps = 3/380 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A  + DEM K G  PD   F  L+  LCK  +V+E+ KLF ++ +R   P+L  F   +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C++G + EA  +L  +   G  PD++ YN L+ G+ +  K+ +A   L +M   G +
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  +I   C+   M+ A++   +    G   D  TY++LI+G C    ++R   +
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
               +++G   + + Y  ++    K+  + + ++LM +M + GC PD+  YN+V+   CK
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCK 438

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G L +A  + N+  A    P   +F  ++ G+  Q  + +A E    M+  G+   P  
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGI--TPDV 496

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   LLN L +A+K++   D +  ++ KGC  N+  + I I S   +  V EA     +
Sbjct: 497 ITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKE 556

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M    + P   T   L+ GL
Sbjct: 557 MKTRGLTPDIVTLCTLICGL 576



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 223/507 (43%), Gaps = 39/507 (7%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L+P     VI    D  N   + +     +  + H+ + Y+ +I+ L    KF A+  ++
Sbjct: 5   LQPKHVAAVIRYQNDPLN-ALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVL 63

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
            EMRK     +   V++ +MR +     V++A+ V + M  Y CEP    +  +++ L +
Sbjct: 64  AEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVE 123

Query: 222 NSSVKEAAKLFDEMRE---------------------RFKPSLR---------------H 245
                +A K++  M++                     R   +LR                
Sbjct: 124 YGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVS 183

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+ KE   +EA ++  +M   G  PDI+ +N L+    + G + ++ +L  ++ 
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           ++G  PN  ++ + IQ LCR   ++EA R    +   G   DV++Y TLI GFCK  K+ 
Sbjct: 244 KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLV 303

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
                L  M+  G+ PN+ TY  I+    K   ++   +++ +    G +PD   Y+ +I
Sbjct: 304 EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLI 363

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C  G++  A+ V+ E            +  +V G   QG +++A +  K+M+  G  
Sbjct: 364 NGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG-- 421

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            +P   T   ++N L +   +  A  + +  + KGC  +++ +   I       ++ +A 
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
                M+   + P   T+  L+ GL K
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCK 508



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 168/412 (40%), Gaps = 50/412 (12%)

Query: 85  HSRLPKLELALQ---HSGVVLRPGLTERVINRCGDAGNLG-----YRYYMWASKQPNYVH 136
           HS+L + E  L    +SGV         +IN    AG +       R  M+    P+   
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
              +   L       R     +  ME+  K    L  T     L++  +   +V +A+++
Sbjct: 359 YSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNT-----LVKGLSKQGLVLQALQL 413

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCK 255
           + +M ++GC PD + +  +++ LCK   + +A  +  D + +   P +  F +L+ G+CK
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +  + +A  +L  M   G  PD++ YN LL+G  +  K+ +  +  K M  KGC PN  +
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT 533

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI-------------------- 355
           Y +LI++ C+  K+ EA   F EM+  G   D+VT  TLI                    
Sbjct: 534 YNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593

Query: 356 ----------------SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
                           + FC    +    ++   M      P+  TY  ++ ++ K   +
Sbjct: 594 KEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNI 653

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           +     + E    G VP  +    V+   C    L EAV + N M    + P
Sbjct: 654 DLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVP 705



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 143/334 (42%), Gaps = 42/334 (12%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRR 183
            + + +  + HS  +Y  L+K LSK         LM++M +    P + T   + +++  
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWT---YNLVVNG 435

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
                 +  A  +L++    GC PD F F  L+D  CK  ++ +A ++ D M      P 
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD 495

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  + +LL G CK  KL         M + G  P+I+ YN L+  + +  K+++A EL K
Sbjct: 496 VITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFK 555

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER--------------------- 341
           EM+ +G  P+  +   LI  LC   ++++A   FV +E+                     
Sbjct: 556 EMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXK 615

Query: 342 ---------------SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
                          S C  D  TY  +I  +CK+  ID  +  L   I +G++P+  T 
Sbjct: 616 LNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTC 675

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++        L E V ++  M + G VP+  N
Sbjct: 676 GKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVN 709



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 6/197 (3%)

Query: 393 HEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           H K E +E+   ++ EMRK +        Y  ++R   + G+++EAVNV+  M+     P
Sbjct: 53  HGKFEAMED---VLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEP 109

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              S+  +++  +  G   +A + +  M   G+   P   T    + S     +   A  
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIY--PDVYTHTIRMKSFCITGRPTAALR 167

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           + + +  +GCE N  ++   I   +      EA     +M+   + P   TF KL+  L 
Sbjct: 168 LLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLC 227

Query: 572 KLYNRQIAAEITEKVRK 588
           K  N Q + ++  KV K
Sbjct: 228 KKGNVQESEKLFSKVMK 244


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 227/466 (48%), Gaps = 18/466 (3%)

Query: 58  NNTTDTHGSHNEFSHDVEKIFRILKKFHSRL-PKLELALQHSGVVLRPGLTERVINRCGD 116
           N++  ++ + N   +D   +  ILK    +L P L  AL  +G+    GL + V +    
Sbjct: 66  NSSPTSNSNPNYHQNDFFTLCNILKDPKIQLGPSLRTALDRTGIEPELGLIQSVFDHFDS 125

Query: 117 AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITT 174
           +  L +  ++WA K+P +  S  ++ +++  L K R+FG+ W L+ +     E   L+++
Sbjct: 126 SPKLLHSVFLWAEKKPGFQSSAALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSS 185

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPK----YGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           + F IL+RR+  A M + AI   +        +  E    +F  LLD+LCK   V+ A  
Sbjct: 186 DTFAILIRRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATD 245

Query: 231 LFDEMRER---FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            FD   E+   + PS+R +  LL GW +  KL  A+ + ++MK    +P +V Y  L+ G
Sbjct: 246 YFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEG 305

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG-CE- 345
           Y++M ++  A EL+ EM+R+G   NA  Y  +I AL    + +E       ME    CE 
Sbjct: 306 YSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEAGRFKEV---LGMMEHFFLCEE 362

Query: 346 -ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
              + TY +L+ G+CK+  +    +IL  MI R + P   TY +      K  ++EE + 
Sbjct: 363 GPTISTYNSLVKGYCKAGDLVGASKILKMMISREVFPTPTTYNYFFRHFSKCRKIEEGMN 422

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  +M + G  PD   Y++++++ C+   L  AV +  EM A        +  +  H   
Sbjct: 423 LYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQISKEMRARGCDMDLATSTMFTHLLC 482

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
                 EA   F++M+ RG++  PQY T   L +   +    E+A+
Sbjct: 483 KMQRFEEAFAEFEDMLRRGIV--PQYLTFHRLNDEFRKQGLTELAR 526


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 213/433 (49%), Gaps = 7/433 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +   I+ L +         L+E +  E   P +I+   +  L+  F     + +A   L 
Sbjct: 254 FNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVIS---YNTLICGFCKHSKLVEAECYLH 310

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEG 257
           +M   G EP+EF +  +++  CK   ++ A K+  D M + F P    ++SL+ G C +G
Sbjct: 311 KMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDG 370

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  V  +  + GF+  I++YN L+ G ++ G +  A +L+K+M   GC P+  +Y 
Sbjct: 371 DMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +++  LC+M  + +AN    +    GC  D+ T+ TLI G+CK R +D+  EILD+M+  
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  ++    K  +L+  V+    M + GC P++  YN++I   CK  ++ EA
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + ++ EM+   L+P   +   ++ G    G L +A E F  +      S         ++
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST-AIFNIMI 609

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N+      V MA+ ++  +    C  + Y + + I S    G++  A ++ L+ +   ++
Sbjct: 610 NAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLV 669

Query: 558 PQPDTFAKLMRGL 570
           P   T  K++  L
Sbjct: 670 PSFTTCGKVLNCL 682



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 189/380 (49%), Gaps = 3/380 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A  + DEM K G  PD   F  L+  LCK  +V+E+ KLF ++ +R   P+L  F   +
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C++G + EA  +L  +   G  PD++ YN L+ G+ +  K+ +A   L +M   G +
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  +I   C+   M+ A++   +    G   D  TY++LI+G C    ++R   +
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
               +++G   + + Y  ++    K+  + + ++LM +M + GC PD+  YN+V+   CK
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCK 438

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G L +A  + N+  A    P   +F  ++ G+  Q  + +A E    M+  G+   P  
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGI--TPDV 496

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   LLN L +A+K++   D +  ++ KGC  N+  + I I S   +  V EA     +
Sbjct: 497 ITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKE 556

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M    + P   T   L+ GL
Sbjct: 557 MKTRGLTPDIVTLCTLICGL 576



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 223/507 (43%), Gaps = 39/507 (7%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L+P     VI    D  N   + +     +  + H+ + Y+ +I+ L    KF A+  ++
Sbjct: 5   LQPKHVAAVIRYQNDPLN-ALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVL 63

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
            EMRK     +   V++ +MR +     V++A+ V + M  Y CEP    +  +++ L +
Sbjct: 64  AEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVE 123

Query: 222 NSSVKEAAKLFDEMRE---------------------RFKPSLR---------------H 245
                +A K++  M++                     R   +LR                
Sbjct: 124 YGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVS 183

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+ KE   +EA ++  +M   G  PDI+ +N L+    + G + ++ +L  ++ 
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           ++G  PN  ++ + IQ LCR   ++EA R    +   G   DV++Y TLI GFCK  K+ 
Sbjct: 244 KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLV 303

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
                L  M+  G+ PN+ TY  I+    K   ++   +++ +    G +PD   Y+ +I
Sbjct: 304 EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLI 363

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C  G++  A+ V+ E            +  +V G   QG +++A +  K+M+  G  
Sbjct: 364 NGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG-- 421

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            +P   T   ++N L +   +  A  + +  + KGC  +++ +   I       ++ +A 
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
                M+   + P   T+  L+ GL K
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCK 508



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 169/412 (41%), Gaps = 50/412 (12%)

Query: 85  HSRLPKLELALQ---HSGVVLRPGLTERVINRCGDAGNLG-----YRYYMWASKQPNYVH 136
           HS+L + E  L    +SGV         +IN    AG +       R  M+    P+   
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
              +   L       R     +  ME+  K    L  T     L++  +   +V +A+++
Sbjct: 359 YSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNT-----LVKGLSKQGLVLQALQL 413

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCK 255
           + +M ++GC PD + +  +++ LCK   + +A  +  D + +   P +  F +L+ G+CK
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +  + +A  +L  M   G  PD++ YN LL+G  +  K+ +  +  K M  KGC PN  +
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIIT 533

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI-------------------- 355
           Y +LI++ C+  K+ EA   F EM+  G   D+VT  TLI                    
Sbjct: 534 YNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593

Query: 356 ----------------SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
                           + FC+   +    ++   M      P+  TY  ++ ++ K   +
Sbjct: 594 KEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNI 653

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           +     + E    G VP  +    V+   C    L EAV + N M    + P
Sbjct: 654 DLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVP 705



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 143/334 (42%), Gaps = 42/334 (12%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRR 183
            + + +  + HS  +Y  L+K LSK         LM++M +    P + T   + +++  
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWT---YNLVVNG 435

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
                 +  A  +L++    GC PD F F  L+D  CK  ++ +A ++ D M      P 
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD 495

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  + +LL G CK  KL         M + G  P+I+ YN L+  + +  K+++A EL K
Sbjct: 496 VITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFK 555

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER--------------------- 341
           EM+ +G  P+  +   LI  LC   ++++A   FV +E+                     
Sbjct: 556 EMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEK 615

Query: 342 ---------------SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
                          S C  D  TY  +I  +CK+  ID  +  L   I +G++P+  T 
Sbjct: 616 LNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTC 675

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++        L E V ++  M + G VP+  N
Sbjct: 676 GKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVN 709



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 16/202 (7%)

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSN------YNVVIRLACKLGELKEAVNVWNEMEA 446
           H K E +E+   ++ EMRK     +V +      Y  ++R   + G+++EAVNV+  M+ 
Sbjct: 53  HGKFEAMED---VLAEMRK-----NVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDF 104

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
               P   S+  +++  +  G   +A + +  M   G+   P   T    + S     + 
Sbjct: 105 YDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIY--PDVYTHTIRMKSFCITGRP 162

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             A  + + +  +GCE N  ++   I   +      EA     +M+   + P   TF KL
Sbjct: 163 TAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKL 222

Query: 567 MRGLKKLYNRQIAAEITEKVRK 588
           +  L K  N Q + ++  KV K
Sbjct: 223 IHVLCKKGNVQESEKLFSKVMK 244


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 225/440 (51%), Gaps = 3/440 (0%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           +++V+KI  +L+  +     +  AL      +   L  +++ R  +     Y  + WA  
Sbjct: 140 NNEVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKD 199

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q  Y HS + Y +++  L K + F  +W L++EM       ++ E    ++RR A A   
Sbjct: 200 QIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGS-VSLETMSKVIRRLARAGRH 258

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
           ++AI     + KYG   D      L+DAL K +SV++A  +F E++     +L  F  L+
Sbjct: 259 QEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLI 318

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G+CK  KL EA  ++ +++ +G EPD++ Y   +  + +     +  ++L +M  KGC 
Sbjct: 319 HGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCK 378

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  ++T+++ AL + +++ EA + + +M++ GC  D   Y++LI    K+ ++    EI
Sbjct: 379 PNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEI 438

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           ++ M ++G+ P+ LTY  ++       + E  + L+ +M ++ C PD+  Y+ ++++ C+
Sbjct: 439 VEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCR 498

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              +K    + + M    +S    ++ ++V G    G L  AC +F EM+ + ++  P+ 
Sbjct: 499 KKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMV--PKD 556

Query: 491 GTLKALLNSLLRAQKVEMAK 510
            T K L   L R   +E  K
Sbjct: 557 STFKMLKEELERKSMLEEMK 576



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 179/385 (46%), Gaps = 25/385 (6%)

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKE 256
           D++P Y   P+ +    ++D L K  + +   +L DEM       SL   + ++    + 
Sbjct: 199 DQIP-YRHSPESY--NSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARA 255

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD-P-NAN 314
           G+  EA +    ++  G   D    N L+    +   + DA  + +E++   C  P N  
Sbjct: 256 GRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELK---CSIPFNLA 312

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           S+ VLI   C+ +K++EA +   E+E+SG E DV++YT  I   C+ +      ++L  M
Sbjct: 313 SFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQM 372

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             +G  PN +T+  IM A  K +++ E +++  +M+K GCVPD S Y+ +I +  K G L
Sbjct: 373 EHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRL 432

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-------SA 487
            +   +  +ME   ++P   ++  ++       C   AC + +E     LL         
Sbjct: 433 TDVKEIVEDMEKQGVTPDVLTYNTLI------SC---ACAHSQEETALTLLLKMEEVSCK 483

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   LL    R +++++ K +   +      +    + I +  L  NG +  ACS+
Sbjct: 484 PDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSF 543

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
             +M+   ++P+  TF  L   L++
Sbjct: 544 FGEMLSKAMVPKDSTFKMLKEELER 568



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 3/239 (1%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y +++    K++     +E++D M       +  T   ++    +    +E +     +
Sbjct: 209 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 268

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            K G   D +  NV++    K   +++A NV+ E++  S+     SF V++HG+     L
Sbjct: 269 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKC-SIPFNLASFNVLIHGYCKAKKL 327

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA +   E+   GL   P   +  A + +  R +       V   +  KGC+ NV  +T
Sbjct: 328 DEAWKIMGEVEKSGL--EPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFT 385

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           I +H+L     + EA      M     +P    ++ L+  L K        EI E + K
Sbjct: 386 IIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEK 444


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 214/419 (51%), Gaps = 6/419 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P L+T  V +  + R   AR++ +AIE+   M   G  PD + +  L++  C     +EA
Sbjct: 248 PNLVTYNVIIGGLCR---ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREA 304

Query: 229 AKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
             +  EM +   KP    + +L+ G+ ++G + +A  +  +M   G E +++++N LL+G
Sbjct: 305 KLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNG 364

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             + GKM  A E+++EM  KG +P++ +Y++LI+  CR + M  A     EM++      
Sbjct: 365 VCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPT 424

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V+TY+ +I+G C+   +     IL  M+  G+ PN + Y  +M AH K+  +EE   ++ 
Sbjct: 425 VLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILE 484

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            MR+ G +PDV  YN +I   CK   ++EA     EM    L P   ++   + G+   G
Sbjct: 485 RMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAG 544

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            +  A  YF EM+  G+L  P  G   AL+    +   V  A  V+  I+++    +V  
Sbjct: 545 EMEIADRYFNEMLSCGVL--PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQT 602

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +++ IH L  NG + EA     ++ +  ++P   T+  L+ G  K  N   A+++ E++
Sbjct: 603 YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 218/464 (46%), Gaps = 40/464 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           ++  L+  + K  K      +M+EM  EK     ++ + +L+      + + +A E+LDE
Sbjct: 357 IWNTLLNGVCKAGKMEKALEIMQEMM-EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 415

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M K    P    +  +++ LC+  +++    +  EM     KP+   +T+L+    KEG+
Sbjct: 416 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 475

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + E++ +L +M++ G  PD+  YN+L+ G+ +  +M +A   L EM  +   PNA++Y  
Sbjct: 476 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 535

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK------------------ 360
            I    +  +ME A+R F EM   G   +V  YT LI G CK                  
Sbjct: 536 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 595

Query: 361 -----------------SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
                            + K+   + I   + ++G+LPN  TY  ++    K+  +++  
Sbjct: 596 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKAS 655

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +L+ EM   G  PD+  YN++I   CK GE++ A N+++++E   L+P   ++  MV G+
Sbjct: 656 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                   A +  +EM+ RG+   P       +LN   + +K E A D++  ++ KG   
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGV--PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAS 773

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            V ++   I     +G ++EA     +M++   +P   T+  L+
Sbjct: 774 TV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 816



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 227/495 (45%), Gaps = 43/495 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI+   + +     + L++EM+K K  P ++T  V +  + R  +   ++    +L 
Sbjct: 393 YSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN---LQGTNAILR 449

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G +P+  V+  L+ A  K   V+E+  + + MRE+   P +  + SL+ G+CK  
Sbjct: 450 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAK 509

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+  L++M +    P+   Y   + GY++ G+M  A     EM   G  PN   YT
Sbjct: 510 RMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYT 569

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+  C+   + EA   F  +       DV TY+ LI G  ++ K+   + I   + ++
Sbjct: 570 ALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEK 629

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LPN  TY  ++    K+  +++  +L+ EM   G  PD+  YN++I   CK GE++ A
Sbjct: 630 GLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERA 689

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            N+++++E   L+P   ++  MV G+        A +  +EM+ RG+   P       +L
Sbjct: 690 KNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV--PPDAFIYNVIL 747

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI-------------------WIHSLFSN 538
           N   + +K E A D++  ++ KG    V   T+                    I   F  
Sbjct: 748 NFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 807

Query: 539 GHVK---------------EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN-RQIAAEI 582
            HV                EA    L+M + +VMP   T+  L+ G   + N  +++A  
Sbjct: 808 NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 867

Query: 583 TEKVRKMAAERQITF 597
            E V K     ++T+
Sbjct: 868 EEMVAKGIEPDKMTY 882



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 203/408 (49%), Gaps = 9/408 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K ++       + EM  R+ +P   T   F+     ++ A  ++ A    +
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI---DGYSKAGEMEIADRYFN 554

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+  ++  L++  CK  +V EA  +F   +  R    ++ ++ L++G  + G
Sbjct: 555 EMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNG 614

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  +  ++++ G  P+   YN+L+SG  + G +  A +LL+EM  KG +P+  +Y 
Sbjct: 615 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 674

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LC+  ++E A   F ++E  G   + VTY  ++ G+CKS+     +++L+ M+ R
Sbjct: 675 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 734

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+   Y  I+    K+E+ E+ ++L  EM + G    VS +N +I   CK G+L+EA
Sbjct: 735 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEA 793

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            ++  EM      P   ++  ++      G + EA   + EM  R ++  P   T  +LL
Sbjct: 794 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM--PTAKTYTSLL 851

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
           +       +     ++  +V KG E +   + + I +    G+V EAC
Sbjct: 852 HGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 899



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 194/405 (47%), Gaps = 3/405 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F +LM  +     + +A+ V      +   P       LL  L K + V+   K+FD M
Sbjct: 147 IFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGM 206

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
              +  P +  +T+++   CK G + +AK VL++M + G  P++V YN ++ G  +   +
Sbjct: 207 CAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLL 266

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A EL + M  KG  P+  +Y +LI   C  ++  EA    +EM   G + + +TY  L
Sbjct: 267 DEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNAL 326

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I GF +   I++ + I D M+  GI  N + +  ++    K  ++E+ +E+M EM + G 
Sbjct: 327 IDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGV 386

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD   Y+++I   C+   +  A  + +EM+   L+P   ++ V+++G    G L     
Sbjct: 387 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 446

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EMV  GL   P       L+ +  +  +VE ++ +   +  +G   +V+ +   I  
Sbjct: 447 ILREMVMNGL--KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG 504

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
                 ++EA +Y ++M++  + P   T+   + G  K    +IA
Sbjct: 505 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 549



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 171/387 (44%), Gaps = 36/387 (9%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           +     Y  LI  LS+  K    + +  E+ +EK  L     +  L+        V KA 
Sbjct: 597 LQDVQTYSVLIHGLSRNGKMHEAFGIFSEL-QEKGLLPNAFTYNSLISGSCKQGNVDKAS 655

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           ++L+EM   G  PD   +  L+D LCK   ++ A  LFD++  R   P+   + +++ G+
Sbjct: 656 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYN------------------------------- 282
           CK      A  +L +M   G  PD  +YN                               
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 775

Query: 283 ---NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
               L+ GY + GK+ +A  LL+EM  K   PN  +YT LI   C+   M EA R ++EM
Sbjct: 776 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 835

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +         TYT+L+ G+     +     + + M+ +GI P+++TY  ++ A+ ++  +
Sbjct: 836 QERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 895

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            E  +L  E+   G    V+ Y+ +I+  CK  E  E + + NE+  +    G  +  V+
Sbjct: 896 MEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVI 955

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLS 486
             GF   G + EA E  + MV  G +S
Sbjct: 956 ARGFQIAGNMDEAAEVLRSMVKFGWVS 982



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 153/324 (47%), Gaps = 5/324 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K  +      L +++  R   P  +T   +  ++  +  ++    A ++L+
Sbjct: 673 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT---YAAMVDGYCKSKNPTAAFQLLE 729

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
           EM   G  PD F++  +L+  CK    ++A  LF EM E+   S   F +L+ G+CK GK
Sbjct: 730 EMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGK 789

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA ++L +M +  F P+ V Y +L+    + G M +A  L  EM+ +   P A +YT 
Sbjct: 790 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 849

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+     +  M E +  F EM   G E D +TY  +I  +C+   +    ++ D ++ +G
Sbjct: 850 LLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 909

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           +  +   Y  ++ A  KKEE  E ++L+ E+ + G    +   +V+ R     G + EA 
Sbjct: 910 MPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAA 969

Query: 439 NVWNEMEAASLSPGTDSFVVMVHG 462
            V   M        T S   +V G
Sbjct: 970 EVLRSMVKFGWVSNTTSLGDLVDG 993



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 134/271 (49%), Gaps = 3/271 (1%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +Y  ++    K  KF     L +EM ++     +T  F  L+  +  +  +++A  +L+E
Sbjct: 742  IYNVILNFCCKEEKFEKALDLFQEMLEKG--FASTVSFNTLIEGYCKSGKLQEANHLLEE 799

Query: 200  MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
            M +    P+   +  L+D  CK   + EA +L+ EM+ER   P+ + +TSLL+G+   G 
Sbjct: 800  MIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGN 859

Query: 259  LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
            + E   +  +M   G EPD + Y  ++  Y + G + +A +L  E+  KG   +  +Y  
Sbjct: 860  MSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDA 919

Query: 319  LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
            LIQALC+ E+  E  +   E+  SG    + T + +  GF  +  +D   E+L SM++ G
Sbjct: 920  LIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFG 979

Query: 379  ILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
             + N  +   ++  ++     E+   L+ +M
Sbjct: 980  WVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 137/278 (49%), Gaps = 2/278 (0%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN+  + +L+ +  +M  + EA   F+  +       +++  +L+    K  K++  +++
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            D M    +LP+  TY +++ AH K   +++   ++ EM + GC P++  YNV+I   C+
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCR 262

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              L EA+ +   M    L P   ++ ++++GF  +    EA     EM+  GL   P+ 
Sbjct: 263 ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGL--KPEP 320

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  AL++  +R   +E A  +   +V  G E N+  W   ++ +   G +++A     +
Sbjct: 321 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 380

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           MM+  V P   T++ L+ G  +  N   A E+ ++++K
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 418



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 2/302 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P+ V+++ L+  Y +MG + +A  +    +     P+  S   L+  L +  K+E   + 
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F  M       DV TYT +IS  CK   +     +L  M ++G  PN +TY  I+    +
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCR 262

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              L+E +EL   M   G VPD+  Y+++I   C     +EA  +  EM    L P   +
Sbjct: 263 ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPIT 322

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ GF+ QG + +A     EMV  G+           LLN + +A K+E A ++   
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGI--EANLIIWNTLLNGVCKAGKMEKALEIMQE 380

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           ++ KG E +   +++ I       ++  A     +M    + P   T++ ++ GL +  N
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 440

Query: 576 RQ 577
            Q
Sbjct: 441 LQ 442


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 225/440 (51%), Gaps = 3/440 (0%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           +++V+KI  +L+  +     +  AL      +   L  +++ R  +     Y  + WA  
Sbjct: 163 NNEVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKD 222

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q  Y HS + Y +++  L K + F  +W L++EM       ++ E    ++RR A A   
Sbjct: 223 QIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGS-VSLETMSKVIRRLARAGRH 281

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
           ++AI     + KYG   D      L+DAL K +SV++A  +F E++     +L  F  L+
Sbjct: 282 QEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLI 341

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G+CK  KL EA  ++ +++ +G EPD++ Y   +  + +     +  ++L +M  KGC 
Sbjct: 342 HGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCK 401

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  ++T+++ AL + +++ EA + + +M++ GC  D   Y++LI    K+ ++    EI
Sbjct: 402 PNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEI 461

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           ++ M ++G+ P+ LTY  ++       + E  + L+ +M ++ C PD+  Y+ ++++ C+
Sbjct: 462 VEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCR 521

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              +K    + + M    +S    ++ ++V G    G L  AC +F EM+ + ++  P+ 
Sbjct: 522 KKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMV--PKD 579

Query: 491 GTLKALLNSLLRAQKVEMAK 510
            T K L   L R   +E  K
Sbjct: 580 STFKMLKEELERKSMLEEMK 599



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 179/385 (46%), Gaps = 25/385 (6%)

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKE 256
           D++P Y   P+ +    ++D L K  + +   +L DEM       SL   + ++    + 
Sbjct: 222 DQIP-YRHSPESY--NSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARA 278

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD-P-NAN 314
           G+  EA +    ++  G   D    N L+    +   + DA  + +E++   C  P N  
Sbjct: 279 GRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELK---CSIPFNLA 335

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           S+ VLI   C+ +K++EA +   E+E+SG E DV++YT  I   C+ +      ++L  M
Sbjct: 336 SFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQM 395

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             +G  PN +T+  IM A  K +++ E +++  +M+K GCVPD S Y+ +I +  K G L
Sbjct: 396 EHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRL 455

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-------SA 487
            +   +  +ME   ++P   ++  ++       C   AC + +E     LL         
Sbjct: 456 TDVKEIVEDMEKQGVTPDVLTYNTLI------SC---ACAHSQEETALTLLLKMEEVSCK 506

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   LL    R +++++ K +   +      +    + I +  L  NG +  ACS+
Sbjct: 507 PDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSF 566

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
             +M+   ++P+  TF  L   L++
Sbjct: 567 FGEMLSKAMVPKDSTFKMLKEELER 591



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 3/246 (1%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y +++    K++     +E++D M       +  T   ++    +    +E +     +
Sbjct: 232 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 291

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            K G   D +  NV++    K   +++A NV+ E++  S+     SF V++HG+     L
Sbjct: 292 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKC-SIPFNLASFNVLIHGYCKAKKL 350

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA +   E+   GL   P   +  A + +  R +       V   +  KGC+ NV  +T
Sbjct: 351 DEAWKIMGEVEKSGL--EPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFT 408

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           I +H+L     + EA      M     +P    ++ L+  L K        EI E + K 
Sbjct: 409 IIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQ 468

Query: 590 AAERQI 595
                +
Sbjct: 469 GVTPDV 474


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 206/415 (49%), Gaps = 12/415 (2%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE 163
           P L ++V+ R    G    +++      P+Y HS   +   I    +MR +  VWAL+  
Sbjct: 78  PELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVAR 137

Query: 164 MRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           MR  +  P   +++ F I+  RF +A    +AI+V   M ++GC  D   F  +LD LCK
Sbjct: 138 MRARRIGP---SSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCK 194

Query: 222 NSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           +  V+ A   LF  +R +FK  +  +  +  GWC   +  +A  VL +M + G  P I  
Sbjct: 195 SKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITT 254

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN LL GY + G++ +A+E   +M+ +  + +  +YT ++     + +++ A + F EM 
Sbjct: 255 YNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMV 314

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G      TY  +I   CK   ++    + + M+++G +PN  TY  ++        ++
Sbjct: 315 GEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMD 374

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           + +E +  M+  GC P+V  YNV IR  C  G++++ ++++ +M   SL P  D++ V++
Sbjct: 375 KAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSL-PNLDTYNVLI 433

Query: 461 HGFLGQG---CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
                +     L+ A +   EMV RG +  P+  T   +LN LL       AK++
Sbjct: 434 SAMFVRKKSEDLVVAGKLLLEMVDRGFI--PRKFTFNRVLNGLLLTGNQAFAKEI 486



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 150/314 (47%), Gaps = 7/314 (2%)

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           +   GK   A ++   MR  GC  + +S+  ++  LC+ +++E A     ++ R   +AD
Sbjct: 157 FVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKAD 216

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           VV+Y  + +G+C  ++  +  E+L  M++RG+ P   TY  ++  + +  +L+E  E   
Sbjct: 217 VVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFL 276

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M++     DV  Y  ++     +GE+K A  V+NEM    + P T ++  M+     + 
Sbjct: 277 QMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKD 336

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            +  A   F+EMV +G +  P   T   ++  L  A  ++ A +    + T GCE NV  
Sbjct: 337 SVENAVLMFEEMVKKGYV--PNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQT 394

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---KKLYNRQIAAE-IT 583
           + + I      G V++  S   + M    +P  DT+  L+  +   KK  +  +A + + 
Sbjct: 395 YNVAIRYFCDAGDVEKGLS-MFEKMGQGSLPNLDTYNVLISAMFVRKKSEDLVVAGKLLL 453

Query: 584 EKVRKMAAERQITF 597
           E V +    R+ TF
Sbjct: 454 EMVDRGFIPRKFTF 467



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 8/180 (4%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAI 194
           S   Y A+I+ L K         + EEM K+   P L T   + +++R    A  + KA+
Sbjct: 321 STATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTT---YNVVIRGLFHAGNMDKAM 377

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
           E ++ M   GCEP+   +   +   C    V++   +F++M +   P+L  +  L+    
Sbjct: 378 EFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSLPNLDTYNVLISAMF 437

Query: 255 ---KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
              K   LV A  +L++M D GF P    +N +L+G    G    A E+L+   + G  P
Sbjct: 438 VRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKCGRLP 497


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 204/412 (49%), Gaps = 23/412 (5%)

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKP 169
           N   DA +L  R        PN       +  ++ SL K + +  V  L ++M  R  KP
Sbjct: 41  NDVDDAVSLFNRLLQQNPTPPNIE-----FNKILGSLVKSKHYHTVLYLSQKMEFRGIKP 95

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV---- 225
            L+      IL+  F     +  A  VL ++ K G +P+      L+  LC N  +    
Sbjct: 96  NLVNCN---ILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKH 152

Query: 226 ------KEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
                 K+A  LF++M  E   P +  FT L+ G+CKEG++ EAK VL  M   G +P +
Sbjct: 153 CIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGV 212

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V YN+L+ GY  + ++  A  +   M + G  P+  SY++LI   C+++ M+EA     E
Sbjct: 213 VTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKE 272

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M       +VVTY++LI G CKS KI    +++D M  RG  PN +TY  I+ A  K  +
Sbjct: 273 MHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQ 332

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           ++  + L+ +M+  G  P++  Y ++I+  C+ G+L++A  V+ ++     +    ++ V
Sbjct: 333 VDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTV 392

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           M+ GF  +G   EA     +M   G +  P   T + ++ SL +  + EMA+
Sbjct: 393 MIQGFCDKGLFDEALTLLSKMEDNGCI--PNAKTYEIIILSLFKKDENEMAE 442



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 188/400 (47%), Gaps = 13/400 (3%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           F +   V  A+ + + + +    P    F  +L +L K+        L  +M  R  KP+
Sbjct: 37  FHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPN 96

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG----------YAQMG 292
           L +   L+  +C+ G +  A  VL ++   G++P+ +  N L+ G          +  +G
Sbjct: 97  LVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVG 156

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K+ DA +L  +M  +  +P+  ++T+L+   C+  +++EA      M   G +  VVTY 
Sbjct: 157 KLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYN 216

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +L+ G+   +++++   I ++M Q G+ P+  +Y  ++    K + ++E +EL+ EM   
Sbjct: 217 SLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHK 276

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
             +P+V  Y+ +I   CK G++  A+ + +EM      P   ++  ++        +  A
Sbjct: 277 QIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNA 336

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                +M  +G+   P   T   L+  L ++ K+E A+ V+  ++ KG  LNVY +T+ I
Sbjct: 337 IALLTQMKNQGI--QPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMI 394

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                 G   EA +    M D   +P   T+  ++  L K
Sbjct: 395 QGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFK 434



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 138/254 (54%), Gaps = 5/254 (1%)

Query: 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           V A+M  ++  KP ++T   +  LM  +   + V KA  + + M + G  PD   +  L+
Sbjct: 199 VLAMMM-IQGIKPGVVT---YNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILI 254

Query: 217 DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           +  CK   + EA +L  EM  +   P++  ++SL+ G CK GK+  A  ++ +M D G  
Sbjct: 255 NGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQP 314

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P+IV Y+++L    +  ++ +A  LL +M+ +G  PN  +YT+LI+ LC+  K+E+A + 
Sbjct: 315 PNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKV 374

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F ++   G   +V TYT +I GFC     D    +L  M   G +PN  TY  I+L+  K
Sbjct: 375 FEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFK 434

Query: 396 KEELEECVELMGEM 409
           K+E E   +L+ EM
Sbjct: 435 KDENEMAEKLLCEM 448



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 111/203 (54%), Gaps = 1/203 (0%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + + IL+  F   +M+ +A+E+L EM      P+   +  L+D LCK+  +  A KL DE
Sbjct: 248 QSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDE 307

Query: 235 MRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R +P ++  ++S+L   CK  ++  A  +L QMK+ G +P++  Y  L+ G  Q GK
Sbjct: 308 MHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGK 367

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + DA ++ +++  KG + N  +YTV+IQ  C     +EA     +ME +GC  +  TY  
Sbjct: 368 LEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEI 427

Query: 354 LISGFCKSRKIDRCYEILDSMIQ 376
           +I    K  + +   ++L  MI+
Sbjct: 428 IILSLFKKDENEMAEKLLCEMIE 450



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 6/219 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    K++       L++EM  ++  P ++T   +  L+     +  +  A++++D
Sbjct: 250 YSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVT---YSSLIDGLCKSGKISYALKLVD 306

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  +LDALCKN  V  A  L  +M+ +  +P++  +T L+ G C+ G
Sbjct: 307 EMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSG 366

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL +A+ V   +   G   ++  Y  ++ G+   G   +A  LL +M   GC PNA +Y 
Sbjct: 367 KLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYE 426

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           ++I +L + ++ E A +   EM  +  +  V     LI+
Sbjct: 427 IIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIA 465



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/271 (18%), Positives = 113/271 (41%), Gaps = 47/271 (17%)

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + + Y +  + F  +  +D    + + ++Q+   P  + +  I+ +  K +     + L 
Sbjct: 26  NFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLS 85

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKL----------------------------------- 431
            +M   G  P++ N N++I   C+L                                   
Sbjct: 86  QKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLN 145

Query: 432 ----------GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
                     G+LK+AV+++N+M   +++P   +F ++V GF  +G + EA      M+ 
Sbjct: 146 GKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMI 205

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
           +G+   P   T  +L++     ++V  AK +++ +   G   ++ +++I I+       +
Sbjct: 206 QGI--KPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMM 263

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            EA     +M    ++P   T++ L+ GL K
Sbjct: 264 DEAMELLKEMHHKQIIPNVVTYSSLIDGLCK 294


>gi|293332689|ref|NP_001168961.1| hypothetical protein [Zea mays]
 gi|223974035|gb|ACN31205.1| unknown [Zea mays]
 gi|413921836|gb|AFW61768.1| hypothetical protein ZEAMMB73_696968 [Zea mays]
          Length = 521

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 191/353 (54%), Gaps = 9/353 (2%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + +   + +  K R+F   W ++  MR     ++T  V VILM R+A+A  V KAI+  D
Sbjct: 137 EAWHLAVWAAGKARRFDLAWEIVRRMRNRG--VLTCRVMVILMERYAAASEVNKAIKTFD 194

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKE- 256
            M K+  E D+ VF  LL ALCK  ++++A +L   +R++F P +   F  +L GWC   
Sbjct: 195 VMEKFKIESDQSVFYSLLHALCKIKNIEDAEELL-FLRKKFFPLTAEGFNIILDGWCNVI 253

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + EAK V  +M +    PD + Y  ++S ++++G + D   +  EM+++G  P    Y
Sbjct: 254 TDVAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGNLFDTLRVYDEMKKRGWIPGIVVY 313

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L+  L R   +++A+  F ++   G + DV TY  +I   C+S K+D   ++++SMI 
Sbjct: 314 NSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNNMIVPLCESCKLDEARKVMESMIL 373

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RGI+P   TY H  L   K+E ++E ++L+ +M++ GC P    + ++I     L E   
Sbjct: 374 RGIVPTISTY-HAFL---KQEGIDESLKLLQKMKEDGCGPKSDTFVMLIDKFFLLNESGN 429

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           A+ VWNEM    +SP    ++ +V G +  GC+  A EY+ EM  +G  S  Q
Sbjct: 430 ALRVWNEMRKYEISPVRAHYMTLVQGLVKHGCIPRALEYYDEMKEKGFASDTQ 482


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 214/445 (48%), Gaps = 14/445 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +P+ V     Y  +I  L K  K      ++EEM ++   P + T   + I++ R   A 
Sbjct: 7   EPDVV----TYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVAT---YTIIVDRLCRAG 59

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V +A E+  +M + GC  +   +  L++ LCK+ +++ A KL +EM  + ++P    + 
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK--EMR 305
           ++L G C+ GK+ EAK     M   G+ PD+V YN LL    + GK+ +A+ L K  +M 
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMA 179

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +   P+  +Y  LI   CR+EK +EA + F ++   G   D VTY +++ G  +   +D
Sbjct: 180 DRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMD 239

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              E+   M+  G  PN  TY  ++  H +   +  C+EL  EM +    PDV   N VI
Sbjct: 240 EAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVI 299

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            + CK  ++ +A  V  EM      P   ++ +++ G      + +A E F  MV  G  
Sbjct: 300 DMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG-- 357

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            AP   +   +LN L +  KV  A+ ++  ++ +    +V  + I +  L   G + EA 
Sbjct: 358 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 417

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGL 570
                M + +V+P   T   LM GL
Sbjct: 418 DLLDVMSEHNVLPDGVTCTTLMHGL 442



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 217/485 (44%), Gaps = 52/485 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI  L K       + L+EEM  +  +P  IT    +  + R      V +A +  D
Sbjct: 83  YNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGK---VSEAKQFFD 139

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR---ERFKPSLRHFTSLLYGWCK 255
            MP  G  PD   +  LLDAL K   V EA  LF  M     +  P L  + +L+ G+C+
Sbjct: 140 SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCR 199

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             K  EA  +   +   G+ PD V YN++L G A+   M +A E+ K+M   GC PN  +
Sbjct: 200 VEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGAT 259

Query: 316 YTVL-----------------------------------IQALCRMEKMEEANRAFVEME 340
           Y+++                                   I  LC+ +K+++A++   EM 
Sbjct: 260 YSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMS 319

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
           + G   DVVTY  L+ G CK+  +D+ +E+  +M+  G  P+ ++Y  ++    K  ++ 
Sbjct: 320 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 379

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +   L   M +   VPDV  +N+++   CK G+L EA ++ + M   ++ P   +   ++
Sbjct: 380 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLM 439

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           HG        EA   F+ MV +G ++   P       +L  L R  K+  A   +  +V 
Sbjct: 440 HGLCRDKRTDEAVRLFQYMVEKGTVADVLPH----NIVLAGLCREGKLAQALLFFKSMVK 495

Query: 519 KGCEL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
              E   +V  +T  +++L   G V +A  Y   M  +   P    +  LM GL+K   R
Sbjct: 496 SDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRK-QGR 554

Query: 577 QIAAE 581
            I A+
Sbjct: 555 HIQAD 559



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 197/415 (47%), Gaps = 48/415 (11%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G EPD   +  ++  LCK   V EA ++ +EM E+   P +  +T ++   C+ GK
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +  +M + G   + V YN L++G  +   +  A++LL+EM  KG +P+  +Y  
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVV----------------------------- 349
           ++  LCRM K+ EA + F  M   G   DVV                             
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 350 --------TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
                   TY TLI GFC+  K D   ++   +I +G +P+ +TY  I+L   +K  ++E
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             E+  +M   GC P+ + Y++V+   C++G +   + ++ EM     SP     V++ +
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPD----VLLCN 296

Query: 462 GFLGQGC----LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
             +   C    + +A +  +EM   G  + P   T   LL+ L +   V+ A +++S +V
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSKIG--AVPDVVTYNILLDGLCKTNLVDKAHELFSTMV 354

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             GC  ++ ++++ ++ L     V +A      M++  ++P   TF  LM GL K
Sbjct: 355 DNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCK 409



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 8/280 (2%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           A+I  L K +K      ++EEM K    P ++T   + IL+       +V KA E+   M
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVT---YNILLDGLCKTNLVDKAHELFSTM 353

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC PD   +  +L+ LCK + V +A  LFD M ER   P +  F  L+ G CK GKL
Sbjct: 354 VDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKL 413

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EAK +L  M +    PD V    L+ G  +  +  +A  L + M  KG   +   + ++
Sbjct: 414 DEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIV 473

Query: 320 IQALCRMEKMEEANRAFVEMERSGCE--ADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +  LCR  K+ +A   F  M +S  E   DVVTYTTL++   ++ ++D+  +    M   
Sbjct: 474 LAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGS 533

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           G  P+ + Y  +M    K+    +   L   M++ G + D
Sbjct: 534 GCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 10/213 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++  L K  K      L + M  RK  P ++T   F ILM     A  + +A ++LD
Sbjct: 365 YSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVT---FNILMDGLCKAGKLDEAKDLLD 421

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKE 256
            M ++   PD      L+  LC++    EA +LF  M E+      L H   +L G C+E
Sbjct: 422 VMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPH-NIVLAGLCRE 480

Query: 257 GKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           GKL +A      M   D  F PD+V Y  L++   + G++  A +  ++M   GC P+  
Sbjct: 481 GKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYV 540

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           +Y  L+  L +  +  +A+R    M+  G  +D
Sbjct: 541 AYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 216/436 (49%), Gaps = 8/436 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +L K +       ++  M K    P  +T   +  ++  + S+   K+AI  L 
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT---YNSILHGYCSSEQPKEAIGFLK 290

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G EPD   +  L+D LCKN    EA K+FD M +R  +P +  + +LL G+  +G
Sbjct: 291 KMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LVE   +L  M   G  PD  V+N L+  YA+  K+ +A  +  +MR+ G +PN  +Y 
Sbjct: 351 ALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYG 410

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+   +++A   F +M   G   +++ YT+LI   C   K D+  E++  M+ R
Sbjct: 411 AVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR 470

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N + +  I+ +H K+  + E  +L   M +IG  P+V  Y+ +I   C  G++ EA
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + + M +  + P   ++  +++G+     + +A   FKEMV  G+  +P   T   +L
Sbjct: 531 TKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV--SPNIITYNIIL 588

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L   ++   AK+++  I   G +L +  + I +H L  N    EA     ++   D+ 
Sbjct: 589 QGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 648

Query: 558 PQPDTFAKLMRGLKKL 573
            +  TF  ++  L K+
Sbjct: 649 LETRTFNIMIGALLKV 664



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 189/382 (49%), Gaps = 8/382 (2%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            VF IL+  +A    V +A+ V  +M ++G  P+   +G ++  LCK+ SV +A   F++
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  E   P++  +TSL++  C   K  +A+ ++++M D G   + + +N+++  + + G+
Sbjct: 432 MIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGR 491

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + ++ +L   M R G  PN  +Y+ LI   C   KM+EA +    M   G + D VTY T
Sbjct: 492 VIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNT 551

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECVELMGEMRK 411
           LI+G+C+  ++D    +   M+  G+ PN +TY  I+  L H ++    +  EL   + K
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK--ELYVGITK 609

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   ++S YN+++   CK     EA+ ++  +    L   T +F +M+   L  G   E
Sbjct: 610 SGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDE 669

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A + F  +   GL+  P   T   +  +L+    +E   D++  +   GC  N       
Sbjct: 670 AKDLFAALSANGLV--PDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 727

Query: 532 IHSLFSNGHVKEACSYCLDMMD 553
           +  L   G +  A +Y L M+D
Sbjct: 728 VRKLLQRGDITRAGTY-LSMID 748



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 193/405 (47%), Gaps = 16/405 (3%)

Query: 175 EVF--VILMRRFASARMVKKAIEVLDEMPK---YGCEPDEFVFGCLLDALCKNSSVKEAA 229
           +VF   IL++        ++A+E+L  M      G  PD   +  +++   K     +A 
Sbjct: 157 DVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAY 216

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
             + EM +R   P +  ++S++   CK   + +A  VL  M   G  P+ + YN++L GY
Sbjct: 217 STYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGY 276

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
               +  +A   LK+MR  G +P+  +Y  L+  LC+  +  EA + F  M + G E D+
Sbjct: 277 CSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDI 336

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY TL+ G+     +   + +LD M++ GI P+   +  ++ A+ K+E+++E + +  +
Sbjct: 337 ATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSK 396

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           MR+ G  P+V  Y  VI + CK G + +A+  + +M    L+P    +  ++H      C
Sbjct: 397 MRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL----C 452

Query: 469 LIE----ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           + +    A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + N
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIF--FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPN 510

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           V  ++  I      G + EA      M    + P   T+  L+ G
Sbjct: 511 VITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLING 555



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 209/447 (46%), Gaps = 11/447 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A K    VH+Y +   LI    +  +    +A +  + K K   +    F  L++   + 
Sbjct: 80  AGKVTPTVHTYGI---LIGCCCRAGRLDLGFAALGNVVK-KGFRVEAITFTPLLKGLCAD 135

Query: 188 RMVKKAIE-VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----FKPS 242
           +    A++ VL  M +  C PD F    LL  LC  +  +EA +L   M +       P 
Sbjct: 136 KRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPD 195

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +T+++ G+ KEG   +A     +M D    PD+V Y+++++   +   M  A E+L 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLT 255

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M + G  PN  +Y  ++   C  E+ +EA     +M   G E DVVTY +L+   CK+ 
Sbjct: 256 TMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNG 315

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +     +I DSM +RG+ P+  TY  ++  +  K  L E   L+  M + G  PD   +N
Sbjct: 316 RSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFN 375

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I    K  ++ EA+ V+++M    L+P   ++  ++      G + +A  YF++M+  
Sbjct: 376 ILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDE 435

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P      +L++SL    K + A+++   ++ +G  LN   +   IHS    G V 
Sbjct: 436 GL--TPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVI 493

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRG 569
           E+      M+   V P   T++ L+ G
Sbjct: 494 ESEKLFDLMVRIGVKPNVITYSTLIDG 520



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 132/316 (41%), Gaps = 10/316 (3%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD---PNANSYT 317
           +A++V  ++   G    I   N  L+  A+      A      M R G     P  ++Y 
Sbjct: 33  DARHVFEELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYG 91

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI-LDSMIQ 376
           +LI   CR  +++    A   + + G   + +T+T L+ G C  ++     +I L  M +
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 377 RGILPNQLT---YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
              +P+  +    L  +    + +E  E + +M + R  G  PDV +Y  VI    K G+
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             +A + ++EM    +SP   ++  ++        + +A E    MV  G++  P   T 
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM--PNCMTY 269

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++L+    +++ + A      + + G E +V  +   +  L  NG   EA      M  
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK 329

Query: 554 ADVMPQPDTFAKLMRG 569
             + P   T+  L++G
Sbjct: 330 RGLEPDIATYCTLLQG 345


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 212/426 (49%), Gaps = 15/426 (3%)

Query: 177 FVILMRRFASARMVKKAIEVL-DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           + I+++    A    +A+E+   EM + G  P    +  +++ LCK++ +    +LF+E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            ER   P +  + +L+   CK G L EA+ +   M   G  P++V Y+ L++G  ++G++
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 295 TDAFELLKEMRRKGCD--PNANSYTVLIQALCRMEKMEEANRAFVEMERSG---CEADVV 349
            +A EL++EM RK CD  PN  +Y   +  LC+     EA      + R G      D V
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVSPDTV 182

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T++TLI G CK  +ID    + D MI  G +PN +TY  ++    K +++E    ++  M
Sbjct: 183 TFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESM 242

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS-----LSPGTDSFVVMVHGFL 464
              G  PDV  Y+V++   CK   + EA+ + + M +       L P   +F +++ G  
Sbjct: 243 VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGAC 302

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             G   +A   F+EMV + L   P   T  AL++ L +A +VE A+D+   +   G   N
Sbjct: 303 KAGNFEQASALFEEMVAKNL--QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 360

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           V  +   +H L  +G ++EAC +  +M+ +  +P   T+  L+  L +      A ++  
Sbjct: 361 VVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVS 420

Query: 585 KVRKMA 590
           +++   
Sbjct: 421 ELKSFG 426



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 11/321 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMV 190
            YV +   Y AL+  L K  K     A++E M  +   P +IT   + +L+  F  A  V
Sbjct: 211 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVIT---YSVLVDAFCKASRV 267

Query: 191 KKAIEVLDEMPKYGCEP-----DEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
            +A+E+L  M   GC P     D+  F  L+   CK  + ++A+ LF+EM  +  +P + 
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVM 327

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            F +L+ G CK G++  A+ +L  M + G  P++V YN L+ G  + G++ +A + L+EM
Sbjct: 328 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM 387

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              GC P++ +Y  L+ ALCR  + ++A +   E++  G + D VTY  L+ G  KS K 
Sbjct: 388 VSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKT 447

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++   +L+ M+ +G  P+  T+        +   L   +EL+  +   G +PD +  + +
Sbjct: 448 EQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSI 507

Query: 425 IRLACKLGELKEAVNVWNEME 445
           +   C+ G+L +   +  E E
Sbjct: 508 LDWVCRSGKLDDVKAMIKEFE 528



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 189/426 (44%), Gaps = 56/426 (13%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK----PQLITTEVFVILMRRFASA 187
           PN V     Y  LI  L K+ +      L++EM ++     P +IT   F   +      
Sbjct: 105 PNVV----TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF---LDGLCKQ 157

Query: 188 RMVKKAIEVLDEM--PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
            M  +A E++  +        PD   F  L+D LCK   + EA  +FD+M    + P++ 
Sbjct: 158 SMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVI 217

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            + +L+ G CK  K+  A  ++  M D G  PD++ Y+ L+  + +  ++ +A ELL  M
Sbjct: 218 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 277

Query: 305 RRKGCDPNA-----NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV----------- 348
             +GC PN       ++ +LI   C+    E+A+  F EM     + DV           
Sbjct: 278 ASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 337

Query: 349 ------------------------VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
                                   VTY  L+ G CKS +I+   + L+ M+  G +P+ +
Sbjct: 338 KAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSI 397

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY  ++ A  +    ++ ++L+ E++  G  PD   YN+++    K G+ ++A+ V  EM
Sbjct: 398 TYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEM 457

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
                 P + +F     G    G L    E  + ++ +G+L  P   T  ++L+ + R+ 
Sbjct: 458 VGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGML--PDATTCSSILDWVCRSG 515

Query: 505 KVEMAK 510
           K++  K
Sbjct: 516 KLDDVK 521


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 220/453 (48%), Gaps = 12/453 (2%)

Query: 141 YRALIKSLSKMRKF-GAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +  L+ ++ +MR++  AV +L ++M      P   T     IL+  F   + V     VL
Sbjct: 93  FNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN---ILINCFCLMQHVDLGFSVL 149

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            ++ K G +P    F  L++ LCK     +A +LFD+M  R  +P +  +T+++ G CK 
Sbjct: 150 AKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKM 209

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+   A  ++ +M + G +PD+V Y+ L+    +   + +A ++   M+ KG  P   SY
Sbjct: 210 GETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSY 269

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LIQ LC   + +EA+    EM       D+VT++ LI  FCK   +     +L +M +
Sbjct: 270 TSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTE 329

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ PN +TY  +M  +  + E+ E  +L   M   GC PDV +Y+++I   C +  + E
Sbjct: 330 MGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDE 389

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++NEM    L+P T S+  ++H F   G L EA E FK+M   G L  P   T   L
Sbjct: 390 AKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYL--PDLCTYSVL 447

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L    +   +  A  ++  +     + N+  +TI I S+  +G++  A     ++    +
Sbjct: 448 LEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGL 507

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
            P    +  ++ GL K     +  E  E  RKM
Sbjct: 508 QPDVQIYTTIINGLCK---EGLLDEALEAFRKM 537



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 176/359 (49%), Gaps = 10/359 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ V     Y  LI SL K R       +   M+ +   P +++   +  L++   S  
Sbjct: 228 QPDVV----TYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVS---YTSLIQGLCSFS 280

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K+A  +L+EM      PD   F  L+D  CK  +V EA  +   M E   +P++  + 
Sbjct: 281 RWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYN 340

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SL++G+  + ++VEA+ +   M   G +PD+  Y+ L++GY  + ++ +A +L  EM  +
Sbjct: 341 SLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQ 400

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  SYT LI A C++ K+ EA   F +M  +G   D+ TY+ L+ GFCK   + + 
Sbjct: 401 GLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKA 460

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + +  +M    + PN + Y  ++ +  K   L    +L  E+   G  PDV  Y  +I  
Sbjct: 461 FRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIING 520

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
            CK G L EA+  + +ME     P   S+ V++ GFL       A +   EM  +G ++
Sbjct: 521 LCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVA 579



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 138/263 (52%), Gaps = 5/263 (1%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
            V   M EM  E P +IT   +  LM  ++    V +A ++ D M   GC+PD F +  L
Sbjct: 322 GVLKTMTEMGVE-PNVIT---YNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSIL 377

Query: 216 LDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  C    + EA +LF+EM  +   P+   +T+L++ +C+ GKL EA+ +   M   G+
Sbjct: 378 INGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGY 437

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD+  Y+ LL G+ + G +  AF L + M+     PN   YT+LI ++C+   +  A +
Sbjct: 438 LPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARK 497

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F E+   G + DV  YTT+I+G CK   +D   E    M + G  PN+ +Y  I+    
Sbjct: 498 LFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFL 557

Query: 395 KKEELEECVELMGEMRKIGCVPD 417
           + ++    V+L+GEMR  G V D
Sbjct: 558 QHKDESRAVQLIGEMRDKGFVAD 580



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           +PN +     Y +L+   S   +      L + M  R  KP + +   + IL+  +   +
Sbjct: 333 EPNVI----TYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFS---YSILINGYCMVK 385

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + +A ++ +EM   G  P+   +  L+ A C+   ++EA +LF +M    + P L  ++
Sbjct: 386 RIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYS 445

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            LL G+CK+G L +A  +   M+    +P++V+Y  L+    + G +  A +L  E+   
Sbjct: 446 VLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVH 505

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+   YT +I  LC+   ++EA  AF +ME  GC  +  +Y  +I GF + +   R 
Sbjct: 506 GLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRA 565

Query: 368 YEILDSMIQRGILPNQLT 385
            +++  M  +G + ++ T
Sbjct: 566 VQLIGEMRDKGFVADEGT 583



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 122/304 (40%), Gaps = 38/304 (12%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEADVVTY 351
            + DA      M  +   P    +  L+ A+ RM +  +A  +   +ME +G   +  T 
Sbjct: 70  NIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTL 129

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             LI+ FC  + +D  + +L  +I+ G+ P  +T                          
Sbjct: 130 NILINCFCLMQHVDLGFSVLAKVIKLGLQPTIIT-------------------------- 163

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
                    +  +I   CK GE  +A+ ++++M A    P   ++  +++G    G    
Sbjct: 164 ---------FTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAA 214

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A    K+M   G    P   T   L++SL + + V  A D++S +  KG    V ++T  
Sbjct: 215 AAGLIKKMGEVG--CQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSL 272

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L S    KEA +   +M   ++MP   TF+ L+    K  N   A  + + + +M  
Sbjct: 273 IQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGV 332

Query: 592 ERQI 595
           E  +
Sbjct: 333 EPNV 336


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 225/468 (48%), Gaps = 44/468 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  L+ S++K +++  V++L  +M       I  +V+   IL+  F     +  A  VL 
Sbjct: 72  FNRLLTSIAKTKQYPTVFSLSNQMDSFG---IPPDVYTLNILINSFCHLNRLGFAFSVLA 128

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  LC    + +A  LFD+M  E F+P++  + +L+ G CK G
Sbjct: 129 KILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 188

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M+    +PD+VVY +++    +  ++T+AF L  +M  +G  P+  +YT
Sbjct: 189 NTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT 248

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI +LC + + +       +M  S    DVV ++T++   CK  KI   ++++D MI R
Sbjct: 249 SLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR 308

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H  + E++E V++   M   G  P+V +YN +I   CK+  + +A
Sbjct: 309 GVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKA 368

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++ EM    L P T ++  ++H     G L +A   F EMV  G +  P   T + LL
Sbjct: 369 TYLFEEMCQKELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQI--PDLATYRILL 425

Query: 498 NSL-----------------------------------LRAQKVEMAKDVWSCIVTKGCE 522
           + L                                    RA ++E A+D++S + +KG  
Sbjct: 426 DYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLR 485

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            NV  +TI I+ L   G + EA    ++M      P   T+  + +GL
Sbjct: 486 PNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 533



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 11/357 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ V    VY ++I SL K R+    + L  +M  +   P + T   +  L+    +  
Sbjct: 206 QPDVV----VYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT---YTSLIHSLCNLC 258

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K    +L++M      PD  +F  ++DALCK   + EA  + D M  R  +P++  + 
Sbjct: 259 EWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYN 318

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G C + ++ EA  V   M   G+ P+++ YN L++GY ++ +M  A  L +EM +K
Sbjct: 319 ALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQK 378

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  +Y  L+   C + ++++A   F EM   G   D+ TY  L+   CK   +D  
Sbjct: 379 ELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEA 437

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L ++    + P+   Y  ++    +  ELE   ++   +   G  P+V  Y ++I  
Sbjct: 438 MALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMING 497

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            C+ G L EA  ++ EM+    SP   ++  +  G L     + A +  +EM+ RG 
Sbjct: 498 LCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGF 554



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 159/323 (49%), Gaps = 7/323 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI SL  + ++  V  L+ +M   K  P ++   +F  ++        + +A +V+D
Sbjct: 247 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVV---IFSTVVDALCKEGKITEAHDVVD 303

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M   G EP+   +  L+D  C  S + EA K+FD M    + P++  + +L+ G+CK  
Sbjct: 304 MMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQ 363

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A Y+  +M      P+ V YN L+     +G++ DA  L  EM   G  P+  +Y 
Sbjct: 364 RMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYR 422

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+  LC+   ++EA      +E S  + D+  YT +I G C++ +++   +I  ++  +
Sbjct: 423 ILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSK 482

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN  TY  ++    ++  L+E  +L  EM   GC PD   YN + +   +  E   A
Sbjct: 483 GLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRA 542

Query: 438 VNVWNEMEAASLSPGTDSFVVMV 460
           + +  EM A   S    +  ++V
Sbjct: 543 IQLLQEMLARGFSADVSTTTLLV 565



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 3/347 (0%)

Query: 223 SSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           +++ +A   F+ M     P S   F  LL    K  +      +  QM   G  PD+   
Sbjct: 48  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L++ +  + ++  AF +L ++ + G  P+  ++T LI+ LC   K+ +A   F +M  
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G + +VVTY TLI+G CK    +    +L SM Q    P+ + Y  I+ +  K  ++ E
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L  +M   G  PD+  Y  +I   C L E K    + N+M  + + P    F  +V 
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 287

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               +G + EA +    M+ RG+   P   T  AL++      +++ A  V+  +V  G 
Sbjct: 288 ALCKEGKITEAHDVVDMMIIRGV--EPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 345

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
             NV ++   I+       + +A     +M   +++P   T+  LM 
Sbjct: 346 APNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH 392



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 7/246 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN +     Y  LI    K+++      L EEM  +K  +  T  +  LM      R+ +
Sbjct: 347 PNVIS----YNTLINGYCKIQRMDKATYLFEEM-CQKELIPNTVTYNTLMHXCHVGRL-Q 400

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLL 250
            AI +  EM  +G  PD   +  LLD LCK S + EA  L   +      P ++ +T ++
Sbjct: 401 DAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 460

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C+ G+L  A+ +   +   G  P++  Y  +++G  + G + +A +L  EM   GC 
Sbjct: 461 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 520

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  + Q L + ++   A +   EM   G  ADV T T L+   C  +      +I
Sbjct: 521 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQI 580

Query: 371 LDSMIQ 376
           L   +Q
Sbjct: 581 LSEFVQ 586



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 119/294 (40%), Gaps = 37/294 (12%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  V +N LL+  A+  +    F L  +M   G  P+  +  +LI + C + ++  A   
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G C   KI     + D MI  G  PN +TY  ++    K
Sbjct: 127 LAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 186

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+  M +  C PDV  Y  +I   CK  ++ EA N+               
Sbjct: 187 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNL--------------- 231

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
                               F +MVG+G+  +P   T  +L++SL    + +    + + 
Sbjct: 232 --------------------FSKMVGQGI--SPDIFTYTSLIHSLCNLCEWKHVTTLLNQ 269

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           ++      +V  ++  + +L   G + EA      M+   V P   T+  LM G
Sbjct: 270 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDG 323



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 11/232 (4%)

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D      + M+     P+ + +  ++ +  K ++      L  +M   G  PDV   N+
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   C L  L  A +V  ++      P T +F  ++ G   +G + +A   F +M+G G
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 169

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T   L+N L +      A  +   +    C+ +V  +T  I SL  +  V E
Sbjct: 170 F--QPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIAAEITEKV 586
           A +    M+   + P   T+  L+  L           L N+ I ++I   V
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 279



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 112/244 (45%), Gaps = 2/244 (0%)

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +++A  +F  M         V +  L++   K+++    + + + M   GI P+  T   
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++ +      L     ++ ++ K+G  PD + +  +IR  C  G++ +A++++++M    
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 169

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   ++  +++G    G    A    + M        P      ++++SL + ++V  
Sbjct: 170 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN--CQPDVVVYTSIIDSLCKDRQVTE 227

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A +++S +V +G   +++ +T  IHSL +    K   +    M+++ +MP    F+ ++ 
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 287

Query: 569 GLKK 572
            L K
Sbjct: 288 ALCK 291


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 219/468 (46%), Gaps = 16/468 (3%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           LI  L K  K      L+E M  ++  ++    +  L++       + +A  +   M K 
Sbjct: 353 LIDILCKEGKVIEANELLEVMI-QRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 411

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-------RFKPSLRHFTSLLYGWCKE 256
           GC PD   +G L+  LC+  ++  A +L  EM         + KP+L  ++ ++ G CK+
Sbjct: 412 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 471

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +  EA+ +  +MK  G  PD++ Y  L+ G+   GK   A  L  EM   G  P+  + 
Sbjct: 472 RREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTS 531

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           +VLI  LC+  K+ EAN+    + + GC  DVVT TTL+ G C   +I +  ++   M +
Sbjct: 532 SVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQK 591

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK------IGCVPDVSNYNVVIRLACK 430
            G +PN +T   +M    +   ++  +EL   M        I C P+  +Y+++I   CK
Sbjct: 592 LGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCK 651

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G   EA  ++ EM+A  + P   S+  ++HGF   G   +A   F EMV  G+   P  
Sbjct: 652 CGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGV--QPDV 709

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   L++ L +  KV  A ++   ++ +GC  N   +T  +  L  N  + EA    + 
Sbjct: 710 TTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 769

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK 598
           M     +P   T+  LM+GL +  N + A E+ +K+     +    FK
Sbjct: 770 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 817



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 220/454 (48%), Gaps = 55/454 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K R+      L EEM+ +   P +I+   +  L+  F  +   +KA  + +
Sbjct: 461 YSIIIDGLCKDRREDEARELFEEMKAQGIMPDVIS---YTTLIHGFCLSGKWEKAKCLFN 517

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G +PD      L+D LCK   V EA KL + + +R     +   T+L+ G C + 
Sbjct: 518 EMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKH 577

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK------GCDP 311
           ++ +A  + ++M+  G  P++V    L+ G  Q G +  A EL K M          C P
Sbjct: 578 RISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 637

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK-------- 363
           NA SY+++I  LC+  + +EA   F EM+  G   DV++YT+LI GFC+S K        
Sbjct: 638 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 697

Query: 364 ---------------------------IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
                                      +    E+L+ MIQRG +PN +TY  ++      
Sbjct: 698 NEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMN 757

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD-- 454
           + + E  +L  +M+K+GC+PDV  Y  +++  C+ G +K A+ +  +M + +   GT+  
Sbjct: 758 DRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 817

Query: 455 ----SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
               S+ +++ G    G   EA E FKEM   G++  P   +  +L++   R+ K+E AK
Sbjct: 818 PDVISYSIIIDGLCKHGREDEARELFKEMKALGVI--PNVISYTSLIHGFCRSGKLEDAK 875

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +++ +V +G +LN   +++ IH     G + +A
Sbjct: 876 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 228/564 (40%), Gaps = 128/564 (22%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           LI  L K  K      L+E M  ++  ++    +  L++       + +A  +   M K 
Sbjct: 60  LIDILCKEGKVIEANELLEVMI-QRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 118

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLF------------------------------- 232
           GC PD   +G L+  LC+  ++  A +L                                
Sbjct: 119 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 178

Query: 233 ---DEMRERFK--------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
              DE RE FK        P +  +TSL++G+C  GK  +AK +  +M D G +PD+   
Sbjct: 179 RREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTS 238

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             L+  + + GK+ +A ELL+ M  +GC  +  +Y+ LI+ LC   ++ EA + F+ M++
Sbjct: 239 GVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 298

Query: 342 SGCEADVVTYTTLISGFCKSRKID------------------RCY--------------- 368
            GC  D + Y TL+ G C++ KI+                  +C                
Sbjct: 299 LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILC 358

Query: 369 ---------EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
                    E+L+ MIQRG + + +TY  ++     +  + E   L   M+K+GC PD  
Sbjct: 359 KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAI 418

Query: 420 NYNVVIRLACKLGELK-----------------------------------------EAV 438
            Y  +++  C+ G +                                          EA 
Sbjct: 419 TYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAR 478

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++ EM+A  + P   S+  ++HGF   G   +A   F EM+  G+   P   T   L++
Sbjct: 479 ELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI--QPDVTTSSVLID 536

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +  KV  A  +   ++ +GC L+V   T  +  L     + +A    L M     MP
Sbjct: 537 MLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMP 596

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEI 582
              T A LM+GL +  N +IA E+
Sbjct: 597 NVVTCATLMKGLCQSGNIKIALEL 620



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 193/406 (47%), Gaps = 20/406 (4%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           + ++  Y   PD      L+D LCK   V EA +L + M +R     +  +++L+ G C 
Sbjct: 42  IPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCM 101

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM----RRKG--C 309
           E ++ EA ++ + M+  G  PD + Y  L+ G  Q G +  A +L +EM     R G  C
Sbjct: 102 EHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKC 161

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P   SY+++I  LC+  + +EA   F EM+  G   DV++YT+LI GFC S K ++   
Sbjct: 162 KPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKC 221

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + + M+  GI P+  T   ++    K+ ++ E  EL+  M   GC+ D+  Y+ +I+  C
Sbjct: 222 LFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLC 281

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
               + EA  ++  M+     P   ++  ++ G    G +  A    +EM+        Q
Sbjct: 282 MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLN----DTSQ 337

Query: 490 YG---------TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           YG         T   L++ L +  KV  A ++   ++ +GC L++  ++  I  L     
Sbjct: 338 YGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHR 397

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           + EA    + M      P   T+  LM+GL +  N  IA ++ +++
Sbjct: 398 ISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEM 443



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 171/354 (48%), Gaps = 55/354 (15%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEV---- 196
            L+K L    +      L  +M+K    P ++T      LM+    +  +K A+E+    
Sbjct: 568 TLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCAT---LMKGLCQSGNIKIALELHKNM 624

Query: 197 LDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           L +   YG  C+P+   +  ++D LCK     EA +LF EM+     P +  +TSL++G+
Sbjct: 625 LSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGF 684

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+ GK  +AKY+  +M D G +PD+  ++ L+    + GK+ +A ELL+ M ++GC PN 
Sbjct: 685 CRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNT 744

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL------------------- 354
            +YT L++ LC  +++ EA + F++M++ GC  DVVTY TL                   
Sbjct: 745 VTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 804

Query: 355 ----------------------ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                                 I G CK  + D   E+   M   G++PN ++Y  ++  
Sbjct: 805 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHG 864

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             +  +LE+   L  EM   G   +   Y+V+I   CK G++ +A  ++ +MEA
Sbjct: 865 FCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 916



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN +     Y  +I  L K  +      L +EM+     P +I+   +  L+  F  + 
Sbjct: 636 KPNAIS----YSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS---YTSLIHGFCRSG 688

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K A  + +EM   G +PD   F  L+D LCK   V EA +L + M +R   P+   +T
Sbjct: 689 KWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYT 748

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR-- 305
           +L+ G C   ++ EA  + ++M+  G  PD+V Y  L+ G  Q G +  A EL K+M   
Sbjct: 749 TLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSD 808

Query: 306 --RKGCD--PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             + G +  P+  SY+++I  LC+  + +EA   F EM+  G   +V++YT+LI GFC+S
Sbjct: 809 TGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRS 868

Query: 362 RKIDRCYEILDSMIQRGILPNQLTY 386
            K++    + + M+ +G+  N +TY
Sbjct: 869 GKLEDAKHLFNEMVDQGVQLNAVTY 893



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 152/333 (45%), Gaps = 17/333 (5%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV---------L 319
           M+ AG  PD   +N L++    + ++ +    +  + R+G  P+  +Y++         L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+  K+ EAN     M + GC  D+VTY+TLI G C   +I     +  SM + G 
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRK------IGCVPDVSNYNVVIRLACKLGE 433
            P+ +TY  +M    +   +   ++L  EM        I C P + +Y+++I   CK   
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             EA  ++ EM+A  + P   S+  ++HGF   G   +A   F EM+  G+   P   T 
Sbjct: 181 EDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGI--QPDVTTS 238

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++   +  KV  A ++   +V +GC L++  ++  I  L     + EA    + M  
Sbjct: 239 GVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 298

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               P    +  LM+GL +     IA  + +++
Sbjct: 299 LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEM 331


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 216/436 (49%), Gaps = 8/436 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +L K +       ++  M K    P  +T   +  ++  + S+   K+AI  L 
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT---YNSILHGYCSSEQPKEAIGFLK 290

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G EPD   +  L+D LCKN    EA K+FD M +R  +P +  + +LL G+  +G
Sbjct: 291 KMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LVE   +L  M   G  PD  V+N L+  YA+  K+ +A  +  +MR+ G +PN  +Y 
Sbjct: 351 ALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYG 410

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+   +++A   F +M   G   +++ YT+LI   C   K D+  E++  M+ R
Sbjct: 411 AVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR 470

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N + +  I+ +H K+  + E  +L   M +IG  P+V  Y+ +I   C  G++ EA
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + + M +  + P   ++  +++G+     + +A   FKEMV  G+  +P   T   +L
Sbjct: 531 TKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV--SPNIITYNIIL 588

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L   ++   AK+++  I   G +L +  + I +H L  N    EA     ++   D+ 
Sbjct: 589 QGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 648

Query: 558 PQPDTFAKLMRGLKKL 573
            +  TF  ++  L K+
Sbjct: 649 LETRTFNIMIGALLKV 664



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 190/382 (49%), Gaps = 8/382 (2%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            VF IL+  +A    V +A+ V  +M ++G  P+   +G ++  LCK+ SV +A   F++
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  E   P++  +TSL++  C   K  +A+ ++++M D G   + + +N+++  + + G+
Sbjct: 432 MIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGR 491

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + ++ +L   M R G  PN  +Y+ LI   C   KM+EA +    M   G + D VTY T
Sbjct: 492 VIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNT 551

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECVELMGEMRK 411
           LI+G+C+  ++D    +   M+  G+ PN +TY  I+  L H ++    +  EL   + K
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK--ELYVGITK 609

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   ++S YN+++   CK     EA+ ++  +    L   T +F +M+   L  G   E
Sbjct: 610 SGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDE 669

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A + F      GL+  P Y T + +  +++    +E    ++  +   GC ++       
Sbjct: 670 AKDLFVAFSSNGLV--PNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFI 727

Query: 532 IHSLFSNGHVKEACSYCLDMMD 553
           +  L   G +  A +Y L M+D
Sbjct: 728 VRELLQRGEITRAGTY-LSMID 748



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 193/405 (47%), Gaps = 16/405 (3%)

Query: 175 EVF--VILMRRFASARMVKKAIEVLDEMPK---YGCEPDEFVFGCLLDALCKNSSVKEAA 229
           +VF   IL++        ++A+E+L  M      G  PD   +  +++   K     +A 
Sbjct: 157 DVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAY 216

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
             + EM +R   P +  ++S++   CK   + +A  VL  M   G  P+ + YN++L GY
Sbjct: 217 STYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGY 276

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
               +  +A   LK+MR  G +P+  +Y  L+  LC+  +  EA + F  M + G E D+
Sbjct: 277 CSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDI 336

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY TL+ G+     +   + +LD M++ GI P+   +  ++ A+ K+E+++E + +  +
Sbjct: 337 ATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSK 396

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           MR+ G  P+V  Y  VI + CK G + +A+  + +M    L+P    +  ++H      C
Sbjct: 397 MRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL----C 452

Query: 469 LIE----ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           + +    A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + N
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIF--FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPN 510

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           V  ++  I      G + EA      M    + P   T+  L+ G
Sbjct: 511 VITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLING 555



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 210/447 (46%), Gaps = 11/447 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A K    VH+Y +   LI    +  +    +A +  + K+  + +    F  L++   + 
Sbjct: 80  AGKVTPTVHTYGI---LIGCCCRAGRLDLGFAALGNVVKKGFR-VEAITFTPLLKGLCAD 135

Query: 188 RMVKKAIE-VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----FKPS 242
           +    A++ VL  M +  C PD F    LL  LC  +  +EA +L   M +       P 
Sbjct: 136 KRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPD 195

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +T+++ G+ KEG   +A     +M D    PD+V Y+++++   +   M  A E+L 
Sbjct: 196 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLT 255

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M + G  PN  +Y  ++   C  E+ +EA     +M   G E DVVTY +L+   CK+ 
Sbjct: 256 TMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNG 315

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +     +I DSM +RG+ P+  TY  ++  +  K  L E   L+  M + G  PD   +N
Sbjct: 316 RSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFN 375

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I    K  ++ EA+ V+++M    L+P   ++  ++      G + +A  YF++M+  
Sbjct: 376 ILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDE 435

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P      +L++SL    K + A+++   ++ +G  LN   +   IHS    G V 
Sbjct: 436 GL--TPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVI 493

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRG 569
           E+      M+   V P   T++ L+ G
Sbjct: 494 ESEKLFDLMVRIGVKPNVITYSTLIDG 520



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 132/316 (41%), Gaps = 10/316 (3%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD---PNANSYT 317
           +A++V  ++   G    I   N  L+  A+      A      M R G     P  ++Y 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYG 91

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI-LDSMIQ 376
           +LI   CR  +++    A   + + G   + +T+T L+ G C  ++     +I L  M +
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 377 RGILPNQLT---YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
              +P+  +    L  +    + +E  E + +M + R  G  PDV +Y  VI    K G+
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             +A + ++EM    +SP   ++  ++        + +A E    MV  G++  P   T 
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM--PNCMTY 269

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++L+    +++ + A      + + G E +V  +   +  L  NG   EA      M  
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK 329

Query: 554 ADVMPQPDTFAKLMRG 569
             + P   T+  L++G
Sbjct: 330 RGLEPDIATYCTLLQG 345


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 227/478 (47%), Gaps = 17/478 (3%)

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLIT 173
           DA NL ++  + +   P+ V     Y +LI  L     F     L  +M +    P  +T
Sbjct: 28  DARNL-FQKLLHSGVTPSTV----AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVT 82

Query: 174 TEVFVILMRRFASAR--MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
             V +      AS +  M+++A +++ +M + G  PD   +  ++D LCK+S V+EA  L
Sbjct: 83  YNVMID-----ASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLL 137

Query: 232 FDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           F+EM R    P+ R   +++ G C++ K+ +A  V  +M+     PD   Y  L+ G A+
Sbjct: 138 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAK 197

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            GK+ +A++L + M   G  P+A +Y V+I  +C    ++EA   F  M   GC     T
Sbjct: 198 AGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFT 257

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           +  LI   CK  K+D  + +L  M   G +P+ +TY  ++        +++   L+ +M 
Sbjct: 258 FNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV 317

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           K  C P V   N +I   CK G +KEA  V + M ++  SP   ++  +VHG    G   
Sbjct: 318 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            A E   +MV RGL  AP   T  AL++ L +A ++  A  V++ + + GC  N++ +T 
Sbjct: 378 RARELLSDMVARGL--APNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTA 435

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            I    S G V        +M+ A + P    +  L   L K      A EI  + R+
Sbjct: 436 LILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE 493



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 199/406 (49%), Gaps = 9/406 (2%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +A +V  EM      PD + +G L+D L K   + EA KLF  M +    PS   +  
Sbjct: 166 IDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNV 225

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +++G C    L EA  +   M+  G  P    +N L+  + + GK+ +AF LLK M   G
Sbjct: 226 VIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDG 285

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y+ LI  LC + ++++A     +M +  C+  VVT  TLI G CK+ +I    
Sbjct: 286 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAR 345

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+LD+M+  G  P+ +TY  ++  H +  + E   EL+ +M   G  P+V  Y  ++   
Sbjct: 346 EVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   L EA  V+ +M+++  +P   ++  ++ GF   G +    + F EMV  G+  +P
Sbjct: 406 CKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI--SP 463

Query: 489 Q---YGTLKA-LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
               YGTL A L  S   A+ +E+ ++    + ++     VY + +    L   G ++ A
Sbjct: 464 DHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAV--DGLLEAGKMEMA 521

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
             +  DM+    +P P+  A L+ GL K      A  + E++  +A
Sbjct: 522 LGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLA 567



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 187/397 (47%), Gaps = 3/397 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+   A A  +  A  +  ++   G  P    +  L+  LC  +S  +A +LF +M 
Sbjct: 13  YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R   PS   +  ++   CK G L EA  ++ +M + G  PD+V YN ++ G  +  ++ 
Sbjct: 73  RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVE 132

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A  L  EM R GC PN  S+  +I  LC+  K+++A + F EME      D  +Y  LI
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILI 192

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G  K+ K++  Y++   M+  GI P+ +TY  ++        L+E +EL   MR  GC 
Sbjct: 193 DGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR 252

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P    +N++I   CK G+L EA  +   M      P   ++  ++ G      + +A   
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            ++MV R     P   T   L++ L +A +++ A++V   +V+ G   +V  +   +H  
Sbjct: 313 LEDMVKR--QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              G  + A     DM+   + P   T+  L+ GL K
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 159/320 (49%), Gaps = 2/320 (0%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M +    PD   Y  L+ G A+ GK+ DA  L +++   G  P+  +YT LI  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
            ++A   F +M R GC    VTY  +I   CK   ++   +++  MI+ G +P+ +TY  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           +M    K   +EE + L  EM ++GC P+  ++N +I   C+  ++ +A  V++EMEA  
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P + S+ +++ G    G L EA + F+ M+  G+   P   T   +++ +  A  ++ 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGI--TPSAVTYNVVIHGMCLAYTLDE 238

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A +++  + +KGC  + + + I I +    G + EA      M D   +P   T++ L+ 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 569 GLKKLYNRQIAAEITEKVRK 588
           GL  +     A  + E + K
Sbjct: 299 GLCSIARVDDARHLLEDMVK 318



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 179/398 (44%), Gaps = 35/398 (8%)

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M ER   P    +  L+ G  K GKL +A+ +  ++  +G  P  V Y +L+ G      
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             DA EL  +M R+GC P+  +Y V+I A C+   +EEA     +M   G   DVVTY T
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           ++ G CKS +++    + + M + G  PN+ ++  I+L   ++ ++++  ++  EM    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD  +Y ++I    K G+L EA  ++  M  + ++P   ++ V++HG      L EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 474 EYFKEMVGRG----------LLSA-----------------------PQYGTLKALLNSL 500
           E FK M  +G          L+ A                       P   T   L++ L
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
               +V+ A+ +   +V + C+  V      IH L   G +KEA      M+ +   P  
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 561 DTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITF 597
            T+  L+ G  +    + A E +++ V +  A   +T+
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 101/280 (36%), Gaps = 81/280 (28%)

Query: 136 HSYDV--YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVK 191
           H  DV  Y  LI  L  + +      L+E+M  R+ KP ++T      L+     A  +K
Sbjct: 286 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNT---LIHGLCKAGRIK 342

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A EVLD M   G  PD   +  L+   C+    + A +L  +M  R   P++  +T+L+
Sbjct: 343 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402

Query: 251 YGWCKEGKLVEAKYVLVQMKD-----------------------------------AGFE 275
            G CK  +L EA  V  QMK                                    AG  
Sbjct: 403 SGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 462

Query: 276 PDIVVYNNL-------------------------------------LSGYAQMGKMTDAF 298
           PD VVY  L                                     + G  + GKM  A 
Sbjct: 463 PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMAL 522

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             +++M R G  P       L+  LC+  +  EA RA +E
Sbjct: 523 GFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEA-RAVLE 561


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 213/451 (47%), Gaps = 17/451 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V     Y  LI    +   F   + L +EM  EK    T  ++ IL+R       +
Sbjct: 190 SPNVV----TYGTLIDGCCRQGDFLKAFRLFDEM-IEKKIFPTVVIYTILIRGLCGESRI 244

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
            +A  +   M   G  P+ + +  ++D  CK + VK+A +L+ EM  +   P++  F  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGIL 304

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK  ++V A+  L+ M   G  P+I VYN L+ GY + G +++A  L  E+ +   
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI 364

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y++LI+ LC +++MEEA+    EM++ G   + VTY TLI G+CK   +++  E
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M ++GI PN +T+  ++  + K  ++E  + L  EM   G +PDV  Y  +I    
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHF 484

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL----- 484
           K G  KEA  +  EM+ A L P   +   ++ G    G + +A + F    G        
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT 544

Query: 485 ------LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
                 L +P +    AL+  L    ++  A   +S +   G   +V+   + I   F  
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRA 604

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            H+++      D++   ++P    +  L +G
Sbjct: 605 MHLRDVMMLQADILKMGIIPNSSVYRVLAKG 635



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 213/489 (43%), Gaps = 50/489 (10%)

Query: 117 AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
             N     +   S++ +   +  +Y A+I  L+  + +     LM ++            
Sbjct: 49  TANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDL------------ 96

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
            +  +++   +R+      VL  +      P+  VFG L+ A  +   V+EA  ++ +M 
Sbjct: 97  -IQCLQKSRRSRICCSVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMD 153

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
               P+++    +L G  K+G+      V   M   G  P++V Y  L+ G  + G    
Sbjct: 154 --VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLK 211

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           AF L  EM  K   P    YT+LI+ LC   ++ EA   F  M  SG   ++ TY T++ 
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G+CK   + +  E+   M+  G+LPN +T+  ++    K +E+    + + +M   G VP
Sbjct: 272 GYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           ++  YN +I   CK G L EA+++ +E+E   + P   ++ +++ G  G   + EA    
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 477 KEMVGRGLLS---------------------------------APQYGTLKALLNSLLRA 503
           +EM  +G L                                   P   T   L++   +A
Sbjct: 392 QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            K+E A  +++ +V KG   +V A+T  I   F +G+ KEA     +M +A + P   T 
Sbjct: 452 GKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 564 AKLMRGLKK 572
           + L+ GL K
Sbjct: 512 SCLIDGLCK 520



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 19/320 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVL 197
           VY  LI    K        +L  E+ K +   I  +VF   IL++       +++A  +L
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHE---ILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM K G  P+   +  L+D  CK  ++++A ++  +M E+  +P++  F++L+ G+CK 
Sbjct: 392 QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK+  A  +  +M   G  PD+V Y  L+ G+ + G   +AF L KEM+  G  PN  + 
Sbjct: 452 GKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 317 TVLIQALCRMEKMEEANRAFV-------------EMERSGCEADVVTYTTLISGFCKSRK 363
           + LI  LC+  ++ +A + F+             E++RS C  + V YT LI G C   +
Sbjct: 512 SCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGR 571

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           I +  +    M   G+ P+  T + I+  H +   L + + L  ++ K+G +P+ S Y V
Sbjct: 572 IFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRV 631

Query: 424 VIRLACKLGELKEAVNVWNE 443
           + +   + G LK A++   E
Sbjct: 632 LAKGYEESGYLKSALSFCGE 651



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 161/391 (41%), Gaps = 54/391 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++    K+        L  EM  +   P ++T   F IL+        +  A + L 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVT---FGILIDGLCKTDEMVSARKFLI 322

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M  +G  P+ FV+ CL+D  CK  ++ EA  L  E+ +    P +  ++ L+ G C   
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  +L +MK  GF P+ V YN L+ GY + G M  A E+  +M  KG +PN  +++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+  KME A   + EM   G   DVV YT LI G  K       + +   M + 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 378 GILPNQLTY----------------LHIMLAH-------EKKEELEECV----------- 403
           G+ PN  T                 + + LA         K  EL+  +           
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTAL 562

Query: 404 --------------ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
                         +   +MR  G  PDV    V+I+   +   L++ + +  ++    +
Sbjct: 563 IQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGI 622

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
            P +  + V+  G+   G L  A  +  E V
Sbjct: 623 IPNSSVYRVLAKGYEESGYLKSALSFCGEGV 653



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 21/187 (11%)

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           QM+    +PDIV     LS  A +G +     +   +R +G D +      LI    +  
Sbjct: 739 QMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCG 798

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG--------- 378
           ++  A R F   ++     DV T+T++I G     + +   ++   M +           
Sbjct: 799 EIGTARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRN 854

Query: 379 -------ILPNQLTYLHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACK 430
                  +LPN +T++ +++A      +EE  +    M++     P +S++  ++ L C+
Sbjct: 855 GEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCR 914

Query: 431 LGELKEA 437
            G L EA
Sbjct: 915 AGLLTEA 921


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 214/447 (47%), Gaps = 13/447 (2%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK-----QPNYVHSYDVYRALIKSLS 149
           ++H+G+         +++R   A      Y M+ +       PN V     Y +LI  L 
Sbjct: 417 MEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSV----TYCSLIDGLG 472

Query: 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
           K       + L E M  +        V+  L+R F      +   ++  EM + GC+PD 
Sbjct: 473 KKGNVDDAYRLFENML-DTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDL 531

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
            +    +D + K   V++   +F++++   F P +R ++ L++G  K G+  E   +   
Sbjct: 532 TLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHA 591

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           MK  GF  D   YN ++ G+ + GK+  A+E+L+EM+ K   P   +Y  +I  L ++++
Sbjct: 592 MKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDR 651

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           ++EA   F E +  G E +V+ Y++LI GF K  +ID  Y IL+ M+++G+ PN  T+  
Sbjct: 652 LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 711

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           +M A  K EE+ E +     M+++ C P+   Y+++I   C++ +  +A   W EM+   
Sbjct: 712 LMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 771

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L P   ++  M+ G    G + +AC  F+     G    P   +  AL+  +  A +   
Sbjct: 772 LVPNVVTYTTMIAGLAKVGNITDACSLFERFKANG--GTPDAASFNALIEGMSHANRAIE 829

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSL 535
           A  V+     KGC +NV A    + +L
Sbjct: 830 AYHVFEETRLKGCRINVKACISLLDAL 856



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 247/520 (47%), Gaps = 22/520 (4%)

Query: 77  IFRILKKFHSRLPKLELAL----QHSGVVLRPGLTERVINRC----GDAGNLGYRYYMWA 128
           +F  L +  +R  ++E AL    +  G  L P +   + N C    G AGN+   +  + 
Sbjct: 219 LFTTLVRALAREGRVEGALALVDEVKGSCLEPDIV--LYNVCIDCFGKAGNVDMAWKFFH 276

Query: 129 SKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
             +   +   DV Y ++I  L K  +      L  +M  E+  +     +  ++  + SA
Sbjct: 277 ELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETER-AVPCAYAYNTMIMGYGSA 335

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
              + A ++LD++ + GC P    F  +L  L K   V EA  LF+ M++  +P+   + 
Sbjct: 336 GQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYN 395

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            ++   C  GK+ EA  +  +M+ AG  P+++  N ++    +  K   A+E+ +   ++
Sbjct: 396 IIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQR 455

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC+PN+ +Y  LI  L +   +++A R F  M  +G  A+ V YT+LI  F    + +  
Sbjct: 456 GCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDG 515

Query: 368 YEILDSMIQRGILPNQLTYLHI-MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
           ++I   M +RG  P+ LT L+  M    K  ++E+   +  +++  G +PDV +Y+++I 
Sbjct: 516 HKIFKEMNRRGCQPD-LTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIH 574

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              K G+ +E  ++++ M+    +    ++  +V GF   G L +A E  +EM  + +  
Sbjct: 575 GLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRV-- 632

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   T  ++++ L +  +++ A  ++    +KG ELNV  ++  I      G + EA  
Sbjct: 633 PPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL 692

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              +MM   + P   T+  LM  L K      A EI E +
Sbjct: 693 ILEEMMKKGLTPNVYTWNSLMDALVK------AEEINEAL 726



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 204/425 (48%), Gaps = 13/425 (3%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR---KEKPQLITTE 175
           +L   +++ +S    +    D Y A++  LS      A+  ++EEM       P     +
Sbjct: 95  SLAAPFFLASSAASPHPLPADAYNAVLPFLS--HDLAAMEKVLEEMSVLGYGVPNPACAD 152

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +   L+R     R +  A  V+  M +    P    +  L+ A+ +    + A +L  +M
Sbjct: 153 LVSALVR----TRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQM 208

Query: 236 RE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +E  ++  +  FT+L+    +EG++  A  ++ ++K +  EPDIV+YN  +  + + G +
Sbjct: 209 QEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNV 268

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A++   E++ +G  P+  SYT +I  LC+  ++ EA   F +ME          Y T+
Sbjct: 269 DMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTM 328

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I G+  + + +  Y++LD + +RG +P+ +++  I+    KK +++E + L   M+K   
Sbjct: 329 IMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DA 387

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+ S YN++I + C  G+++EA  + +EME A L P   +  +MV           A E
Sbjct: 388 EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYE 447

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F+    RG    P   T  +L++ L +   V+ A  ++  ++  G   N   +T  I +
Sbjct: 448 MFETASQRG--CNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRN 505

Query: 535 LFSNG 539
            F +G
Sbjct: 506 FFMHG 510


>gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
 gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
          Length = 532

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 201/411 (48%), Gaps = 10/411 (2%)

Query: 85  HSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK----QPNYVHSYDV 140
           H  +  +E AL    +VL      +V+ R     N  + ++ W  K    +  +     +
Sbjct: 104 HKPVEDIERALSLCDLVLTDDFVLKVLRRHRSDWNPAFIFFNWVLKRGTNEEKFTPGSVI 163

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  ++  L K R+F  V  ++ EM K K +L+  E + +L+ R+A+A  V++AI +    
Sbjct: 164 YNEILVILGKFRRFEEVDKVLVEMSKRK-ELVNEETYSVLLNRYAAAHKVEEAISIFYRR 222

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
            ++G E +   F  LL  LC+   V+ A  LF   +  F   ++    +L GWC  G + 
Sbjct: 223 QEFGLEMNLIAFQSLLMWLCRYKHVEAAETLFHSKKHEFVTDIKTSNIILNGWCVLGNVH 282

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EAK    ++ ++  EPDI  Y  L++   + GK+  A +L + M  +G   +      +I
Sbjct: 283 EAKRFWREIIESKCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNCII 342

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR--G 378
            ALC  +++ EA   F EM   GC A+V TY TLI   CK R++++  E+L+ M +R   
Sbjct: 343 DALCFKKRIPEALEIFKEMNERGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEERKGS 402

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN +T+++++ +    EE+     L   M + GC      YN+++RL       +   
Sbjct: 403 CWPNSVTFIYLLGSVRGPEEVP---VLFQRMERSGCKMTSDIYNLILRLYMDWDIQERVK 459

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           + WNEM+   L P   S+ +M+HG   +G   +   YF EM  +G++  P+
Sbjct: 460 STWNEMKEMGLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEMTLKGIMPEPK 510



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 200/446 (44%), Gaps = 23/446 (5%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP--QLITTEVFVI-LMRRF 184
            S +P  VH  D     ++++   R+   V    E++ +      L+ T+ FV+ ++RR 
Sbjct: 78  VSDEPITVHPDDPSAVYVQNVLYFRRHKPV----EDIERALSLCDLVLTDDFVLKVLRRH 133

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEF-----VFGCLLDALCKNSSVKEAAKLFDEMRERF 239
            S      A    + + K G   ++F     ++  +L  L K    +E  K+  EM +R 
Sbjct: 134 RSD--WNPAFIFFNWVLKRGTNEEKFTPGSVIYNEILVILGKFRRFEEVDKVLVEMSKRK 191

Query: 240 K-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           +  +   ++ LL  +    K+ EA  +  + ++ G E +++ + +LL    +  K  +A 
Sbjct: 192 ELVNEETYSVLLNRYAAAHKVEEAISIFYRRQEFGLEMNLIAFQSLLMWLCRY-KHVEAA 250

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E L   ++     +  +  +++   C +  + EA R + E+  S CE D+ TY TLI+  
Sbjct: 251 ETLFHSKKHEFVTDIKTSNIILNGWCVLGNVHEAKRFWREIIESKCEPDIYTYGTLINSL 310

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            K  K+    ++  +M +RG+  + +    I+ A   K+ + E +E+  EM + GC  +V
Sbjct: 311 TKKGKLGTALKLFRAMWERGLTTDVVICNCIIDALCFKKRIPEALEIFKEMNERGCAANV 370

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEME--AASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           + YN +I+  CK+  +++   + NEME    S  P + +F+ ++    G     E    F
Sbjct: 371 ATYNTLIKHLCKIRRMEKVNELLNEMEERKGSCWPNSVTFIYLLGSVRGPE---EVPVLF 427

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           + M   G         L  +L   +     E  K  W+ +   G   +  ++TI IH L+
Sbjct: 428 QRMERSGCKMTSDIYNL--ILRLYMDWDIQERVKSTWNEMKEMGLGPDRRSYTIMIHGLY 485

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDT 562
             G  K+   Y  +M    +MP+P T
Sbjct: 486 EKGRTKDGLRYFNEMTLKGIMPEPKT 511


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 228/464 (49%), Gaps = 13/464 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           +I  L K RK      L ++M  +   P ++T   +  L+      R VK+A ++ +E  
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVT---YGALIDGLGKQRRVKEAYDLFEEAR 57

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKL 259
             GC P    +  ++D LCK   ++ A  L+D+M     F+P++  +++L+ G C++ ++
Sbjct: 58  AKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEV 117

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +   +L +M   G  P+ V YN L++     G+  +AF LL++M   GC P   ++ ++
Sbjct: 118 DKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLI 177

Query: 320 IQALCRMEKMEEANRAFVE--MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           I+ LC+  ++E A R   E  M  SG   DV+T+ +++ G CK ++I   + +    ++R
Sbjct: 178 IKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +TY  ++    K  +++E ++L+ +M ++GC  +   Y+ V+    K+G +++A
Sbjct: 238 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDA 297

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           V V  +M  A   P   ++  ++ GF  +  L EA    +EM+  G    P   T   L 
Sbjct: 298 VVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF--HPSVVTYTTLC 355

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM-DADV 556
           + L R+ + + A ++   +  +GC  N   ++  +  L   G V EA  Y   M  D  V
Sbjct: 356 HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV 415

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFKM 599
            P    ++ L+ GL K      A E  E+ +R       +TF +
Sbjct: 416 APHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSI 459



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 216/451 (47%), Gaps = 11/451 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +  +      L+EEM  R   P  +T   +  L+         K+A  +L+
Sbjct: 104 YSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVT---YNTLVNALLGQGRSKEAFSLLE 160

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM---RERFKPSLRHFTSLLYGWCK 255
           +M   GC P+   FG ++  LCK   ++ A ++ DEM        P +  F S+L G CK
Sbjct: 161 QMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCK 220

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           E ++++A  V  +  + G  P++V Y+ L+ G ++M KM +A +LL +M   GC  N  +
Sbjct: 221 EQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT 280

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y+ ++  L ++ +ME+A     +M  +GC  D VTY TLI GF K +++     +L  M+
Sbjct: 281 YSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREML 340

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  P+ +TY  +     +    +E VE++  M   GC P+   Y+ ++   CK G + 
Sbjct: 341 EAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVT 400

Query: 436 EAVNVWNEMEAASL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           EA+  + +M    + +P   ++  ++ G    G + EA E+ + M+  G +  P   T  
Sbjct: 401 EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRI--PDVVTFS 458

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+N L  A +++   +++  +  +GC  ++  +   +  L     V EA      M   
Sbjct: 459 ILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSD 518

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
            + P   T   ++ GL ++   + A  I ++
Sbjct: 519 GLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 231/486 (47%), Gaps = 14/486 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  +I  L K  +      L ++M      +P ++T   +  L+        V K  ++L
Sbjct: 68  YNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVT---YSTLIDGLCRDHEVDKGCKLL 124

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +EM   GC P+   +  L++AL      KEA  L ++M      P L  F  ++ G CKE
Sbjct: 125 EEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKE 184

Query: 257 GKLVEAKYVLVQ---MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           G+ +EA + +V    M ++G  PD++ +N++L G  +  ++ DA  + K    +GC PN 
Sbjct: 185 GE-IEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNV 243

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y+ LI  L +M KM+EA +   +M   GC A+ VTY+T++ G  K  +++    +L  
Sbjct: 244 VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 303

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G LP+ +TY  ++    K++ L E V L+ EM + G  P V  Y  +    C+ G 
Sbjct: 304 MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR 363

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             EAV + + M A   +P   ++  +V G    G + EA  YF++M  R  + AP     
Sbjct: 364 FDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM-ARDEVVAPHVIAY 422

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            AL++ L +A K++ A +    ++  G   +V  ++I I+ L   G +         M +
Sbjct: 423 SALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAE 482

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK--MAAERQITFKMYKRRGERDLKEK 611
              +P   T+A L+  L +      A ++ +++R   ++ +R     M     E +  E 
Sbjct: 483 RGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDED 542

Query: 612 AKKQVD 617
           AK+  D
Sbjct: 543 AKRIQD 548



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 166/330 (50%), Gaps = 8/330 (2%)

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE 175
           DA N+ ++  +    +PN V     Y  LI  LSKM K      L+ +M +   +  T  
Sbjct: 226 DAHNV-FKRALERGCRPNVV----TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT 280

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
              ++       RM + A+ VL +M   GC PD   +  L+D   K   ++EA  L  EM
Sbjct: 281 YSTVVDGLLKVGRM-EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM 339

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            E  F PS+  +T+L +G C+ G+  EA  +L  M   G  P+ + Y++++ G  + G++
Sbjct: 340 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 399

Query: 295 TDAFELLKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           T+A    ++M R +   P+  +Y+ LI  LC+  K++EA      M R+G   DVVT++ 
Sbjct: 400 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSI 459

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI+G C + +ID   E+   M +RG +P+ +TY  ++    +   ++E  +L  +MR  G
Sbjct: 460 LINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDG 519

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
             PD S    +I    ++   ++A  + +E
Sbjct: 520 LSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 205/407 (50%), Gaps = 8/407 (1%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  +I    +  +   VW L+E+M+++  KP   T    + L+ R      + +A E   
Sbjct: 707  YSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICK---LAEAEEAFS 763

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            EM   G  PD  V+  L+D  CK   ++ A+K F EM  R   P +  +T+++ G+C+ G
Sbjct: 764  EMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 823

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             +VEA  +  +M   G EPDI+ +  L++GY + G + DAF +   M + GC PN  +YT
Sbjct: 824  DMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYT 883

Query: 318  VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             LI  LC+   ++ AN    EM + G + ++ TY ++++G CKS  I+   +++      
Sbjct: 884  TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 943

Query: 378  GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            G+  + +TY  +M A+ K  E+++  E++ EM   G  P +  +NV++   C  G L++ 
Sbjct: 944  GLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 1003

Query: 438  VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              + N M A  ++P   +F  +V  +  +  L  A   +K+M  RG+   P   T + L+
Sbjct: 1004 EKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGV--EPDGKTYENLV 1061

Query: 498  NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                 A+ ++ A  ++  +  KG  ++V  +++ I   F      EA
Sbjct: 1062 KGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEA 1108



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 192/381 (50%), Gaps = 3/381 (0%)

Query: 190  VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
            + +A  +L  M   G  PD   +  +++  C+   + +  KL ++M+++  KP+   + S
Sbjct: 685  INEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGS 744

Query: 249  LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            ++   C+  KL EA+    +M   G  PD +VY  L+ G+ + G +  A +   EM  + 
Sbjct: 745  IIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRD 804

Query: 309  CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
              P+  +YT +I   C++  M EA + F EM   G E D++T+T L++G+CK+  I   +
Sbjct: 805  ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAF 864

Query: 369  EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
             + + MIQ G  PN +TY  ++    K+ +L+   EL+ EM KIG  P++  YN ++   
Sbjct: 865  RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 924

Query: 429  CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            CK G ++EAV +  E EAA L+  T ++  ++  +   G + +A E   EM+G+GL   P
Sbjct: 925  CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGL--QP 982

Query: 489  QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
               T   L+N       +E  + + + ++ KG   N   +   +       ++K A +  
Sbjct: 983  TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIY 1042

Query: 549  LDMMDADVMPQPDTFAKLMRG 569
             DM    V P   T+  L++G
Sbjct: 1043 KDMCSRGVEPDGKTYENLVKG 1063



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 191/397 (48%), Gaps = 4/397 (1%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN-SSVKEAAKLFDE 234
           VF +  +      M+ +A +V ++M  YG           L  L K+ +    A  +F E
Sbjct: 600 VFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFRE 659

Query: 235 MRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
             E     ++  +  +++  C+ G++ EA ++L+ M+  G+ PD++ Y+ +++GY + G+
Sbjct: 660 FPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGE 719

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +   ++L+++M++KG  PN+ +Y  +I  LCR+ K+ EA  AF EM   G   D + YTT
Sbjct: 720 LDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTT 779

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ GFCK   I    +    M  R I P+ LTY  I+    +  ++ E  +L  EM   G
Sbjct: 780 LVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRG 839

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD+  +  ++   CK G +K+A  V N M  A  SP   ++  ++ G   +G L  A 
Sbjct: 840 LEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 899

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E   EM   GL   P   T  +++N L ++  +E A  +       G   +   +T  + 
Sbjct: 900 ELLHEMWKIGL--QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 957

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +   +G + +A     +M+   + P   TF  LM G 
Sbjct: 958 AYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGF 994



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 163/328 (49%), Gaps = 3/328 (0%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ-MGKMTDAFELLKEMRRKGCDPNANS 315
           G L EA+ V  +M + G    +   N  L+  ++   K   A  + +E    G   N  S
Sbjct: 612 GMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVAS 671

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y ++I  +C++ ++ EA+   + ME  G   DV++Y+T+I+G+C+  ++D+ +++++ M 
Sbjct: 672 YNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMK 731

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           Q+G+ PN  TY  I+    +  +L E  E   EM   G +PD   Y  ++   CK G+++
Sbjct: 732 QKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIR 791

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A   + EM +  ++P   ++  ++ GF   G ++EA + F EM+ RGL   P   T   
Sbjct: 792 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGL--EPDIITFTE 849

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+N   +A  ++ A  V + ++  GC  NV  +T  I  L   G +  A     +M    
Sbjct: 850 LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           + P   T+  ++ GL K  N + A ++ 
Sbjct: 910 LQPNIFTYNSIVNGLCKSGNIEEAVKLV 937



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 155/338 (45%), Gaps = 12/338 (3%)

Query: 128  ASKQPNYVHSYDV------YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVI 179
            ASK    +HS D+      Y A+I    ++        L  EM  R  +P +IT   F  
Sbjct: 793  ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIIT---FTE 849

Query: 180  LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
            LM  +  A  +K A  V + M + GC P+   +  L+D LCK   +  A +L  EM +  
Sbjct: 850  LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 239  FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             +P++  + S++ G CK G + EA  ++ + + AG   D V Y  L+  Y + G+M  A 
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 299  ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            E+L EM  KG  P   ++ VL+   C    +E+  +    M   G   +  T+  L+  +
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029

Query: 359  CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            C    +     I   M  RG+ P+  TY +++  H     ++E   L  EM+  G    V
Sbjct: 1030 CIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSV 1089

Query: 419  SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            S Y+V+I+   K  +  EA  ++++M    L+   + F
Sbjct: 1090 STYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIF 1127



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 1/212 (0%)

Query: 174  TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
            T  +  LM  +  +  + KA E+L EM   G +P    F  L++  C +  +++  KL +
Sbjct: 949  TVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1008

Query: 234  EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
             M  +   P+   F  L+  +C    L  A  +   M   G EPD   Y NL+ G+    
Sbjct: 1009 WMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNAR 1068

Query: 293  KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
             M +A+ L +EM+ KG   + ++Y+VLI+   + +K  EA   F +M R G  AD   + 
Sbjct: 1069 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128

Query: 353  TLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
                   K ++ D   + +D +I+  ++  QL
Sbjct: 1129 FFSDTKYKGKRPDTIVDPIDEIIENYLVDEQL 1160


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 207/420 (49%), Gaps = 17/420 (4%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           AL+ +L + R+F  +  L+ EM++   +P ++T   F IL+      R V +A+EV ++M
Sbjct: 310 ALLTALGRAREFKRMNTLLAEMKEMDIQPNVVT---FGILINHLCKFRRVDEALEVFEKM 366

Query: 201 PK-----YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGW 253
                  +  EPD   +  L+D LCK    +E   L + MR   R  P+   +  L+ G+
Sbjct: 367 NGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGY 426

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK   +  A+ +  QM   G  P++V  N L+ G  + G++  A E   EM+ KG   NA
Sbjct: 427 CKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNA 486

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +YT LI+A C +  +E+A   F EM  +GC  D + Y TLISG  ++ K+DR   +L  
Sbjct: 487 VTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSK 546

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M + G  P+ +++  ++    +K +L+E  E++ EM   G  PD   YN +I    K G+
Sbjct: 547 MKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
              A  +  +M    L P   ++  ++H +   G L EA + F++M     +  P     
Sbjct: 607 FSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKV-PPNTVIY 665

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+NSL R  +V++A  +   +  KG + N   +    +++F     K   S   ++MD
Sbjct: 666 NILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTF----NAMFKGLQEKNWLSKAFELMD 721



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 184/359 (51%), Gaps = 4/359 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI  L K+ +      L+E MR +   +  T  +  L+  +  A M++ A E+ D+
Sbjct: 382 TYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQ 441

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M K G  P+      L+D +CK+  +  A + F+EM+ +  K +   +T+L+  +C    
Sbjct: 442 MNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNN 501

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  +  +M +AG  PD +VY  L+SG +Q GK+  A  +L +M+  G  P+  S+ V
Sbjct: 502 IEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNV 561

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   CR  K++EA     EME +G + D VTY TLIS F K+      + ++  M++ G
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEA 437
           ++P  +TY  ++ A+     L+E +++  +M     V P+   YN++I   C+  ++  A
Sbjct: 622 LVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLA 681

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           +++ ++M+   + P T++F  M  G   +  L +A E    M        P Y T++ L
Sbjct: 682 LSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHA--CNPDYITMEIL 738



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 153/306 (50%), Gaps = 11/306 (3%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V        L+  + K  +         EM+ +  K   +T   +  L+R F +   
Sbjct: 449 PNVV----TLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVT---YTALIRAFCNVNN 501

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           ++KA+E+ DEM + GC PD  V+  L+  L +   +  A+ +  +M+E  F P +  F  
Sbjct: 502 IEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNV 561

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C++ KL EA  +L +M++AG +PD V YN L+S +++ G  + A  L+K+M ++G
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMER-SGCEADVVTYTTLISGFCKSRKIDRC 367
             P   +Y  LI A C    ++EA + F +M   S    + V Y  LI+  C+  ++D  
Sbjct: 622 LVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLA 681

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             ++D M  +G+ PN  T+  +    ++K  L +  ELM  M +  C PD     ++   
Sbjct: 682 LSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEW 741

Query: 428 ACKLGE 433
              +GE
Sbjct: 742 LSAVGE 747



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 183/416 (43%), Gaps = 23/416 (5%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF--VFGCLLDALCKNSSVKEAA 229
           ++     +L+R F  A+MV ++  V +E+    C       +   L+D L +   V +A 
Sbjct: 157 LSVNAATLLIRCFGRAQMVDESFLVYNEL----CPSRRLTHIRNILIDVLFRKGRVDDAL 212

Query: 230 KLFDEM---RERFKPSLR--HFT-SLLYGWCKEGKLV-EAKYVLVQMKDAGFE--PDIVV 280
            L DEM   +  F P+    H   S L    K G+ V E + V +  K A  E  P+ + 
Sbjct: 213 HLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIW 272

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
              L+S   + G+   A+++L  + + G    A S   L+ AL R  + +  N    EM+
Sbjct: 273 LTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMK 332

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI---QRGIL--PNQLTYLHIMLAHEK 395
               + +VVT+  LI+  CK R++D   E+ + M      G L  P+ +TY  ++    K
Sbjct: 333 EMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCK 392

Query: 396 KEELEECVELMGEMR-KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
               EE + L+  MR +  C+P+   YN +I   CK   ++ A  ++++M    + P   
Sbjct: 393 VGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVV 452

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           +   +V G    G +  A E+F EM G+GL       T  AL+ +      +E A +++ 
Sbjct: 453 TLNTLVDGMCKHGRINGAVEFFNEMQGKGL--KGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  GC  +   +   I  L   G +  A      M +A   P   +F  L+ G 
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGF 566



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V    +Y  LI SL +  +     +LM++M+ +  KP    T  F  + +       
Sbjct: 660 PNTV----IYNILINSLCRKNQVDLALSLMDDMKVKGVKPN---TNTFNAMFKGLQEKNW 712

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           + KA E++D M ++ C PD      L + L   S+V E AKL
Sbjct: 713 LSKAFELMDRMTEHACNPDYITMEILTEWL---SAVGETAKL 751


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 213/420 (50%), Gaps = 4/420 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +K+A+ + +EM + G +PD   +  +++ LCK+ +   A +L  +M E+  KP+L  +T+
Sbjct: 178 IKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTT 237

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CK+  + +A  +L +M D G  PD+V Y+ +L G+  +G + +A  L  EM  + 
Sbjct: 238 IIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRN 297

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  ++T+L+  LC+   + EA   F  M + G E +  TY  L+ G+C + ++D   
Sbjct: 298 VMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQ 357

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++LD M+ +G  P   +Y  ++  + K+  L+E   L+ EM +    PD   Y+ +++  
Sbjct: 358 KVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C++G  +EA+N++ EM ++ L P   ++  ++ G    G L EA +  K M    +   P
Sbjct: 418 CQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI--EP 475

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                  L+  +  A K+E+AK+++S +   G +  +  +TI I  L   G   EA    
Sbjct: 476 DIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELF 535

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKMYKRRGERD 607
             M D   +P   ++  +++G  +  +   A   I E V K  +    TF+M      RD
Sbjct: 536 RKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDLESRD 595



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 10/379 (2%)

Query: 136 HSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           H  DV  Y  +I  L K         L+ +M ++  KP L+    +  ++       +V 
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVA---YTTIIDSLCKDTLVN 249

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+++L EM   G  PD   +  +L   C    + EA  LF+EM  R   P+   FT L+
Sbjct: 250 DAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILV 309

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CKEG + EA+ V   M   G EP+   YN L+ GY    +M +A ++L  M  KGC 
Sbjct: 310 DGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCA 369

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P  +SY +LI   C+  +++EA    VEM       D VTY+TL+ G C+  +      +
Sbjct: 370 PVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNL 429

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M   G+LP+ +TY  ++    K   L+E ++L+  M++    PD+  YN++I     
Sbjct: 430 FKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFI 489

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+L+ A  +++++ A  + P   ++ +M+ G L +G   EA E F++M   G L  P  
Sbjct: 490 AGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFL--PNS 547

Query: 491 GTLKALLNSLLRAQKVEMA 509
            +   ++   L+ Q    A
Sbjct: 548 CSYNVIIQGFLQNQDSSTA 566



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 4/354 (1%)

Query: 219 LCKNS-SVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           L  NS S+ +A A  +  +R   +PS+  F   L    K+ +      +  QM   G   
Sbjct: 66  LSNNSISIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTH 125

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           ++   N L++   ++  +  A  +L +M + G  P+A ++  LI   C   +++EA   F
Sbjct: 126 NVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLF 185

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM R G + DV++Y+T+I+G CKS       ++L  M ++G  PN + Y  I+ +  K 
Sbjct: 186 NEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKD 245

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             + + ++L+ EM   G  PDV  Y+ ++   C LG L EA  ++NEM   ++ P T +F
Sbjct: 246 TLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTF 305

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            ++V G   +G + EA   F+ M  +G  + P   T  AL++      +++ A+ V   +
Sbjct: 306 TILVDGLCKEGMVSEARCVFEAMTKKG--AEPNAYTYNALMDGYCLNNQMDEAQKVLDIM 363

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V KGC   V+++ I I+       + EA S  ++M + ++ P   T++ LM+GL
Sbjct: 364 VDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 159/324 (49%), Gaps = 8/324 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++     +        L  EM  R   P  +T   F IL+       MV +A  V +
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVT---FTILVDGLCKEGMVSEARCVFE 326

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M K G EP+ + +  L+D  C N+ + EA K+ D M ++   P +  +  L+ G+CK  
Sbjct: 327 AMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRR 386

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L EAK +LV+M +    PD V Y+ L+ G  Q+G+  +A  L KEM   G  P+  +Y+
Sbjct: 387 RLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYS 446

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC+   ++EA +    M+ S  E D+V Y  LI G   + K++   E+   +   
Sbjct: 447 TLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFAD 506

Query: 378 GILPNQLTYLHIMLAHEKKEEL-EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           GI P   TY  IM+    KE L +E  EL  +M   G +P+  +YNV+I+   +  +   
Sbjct: 507 GIQPTIRTY-TIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSST 565

Query: 437 AVNVWNEMEAASLSPGTDSFVVMV 460
           A+ + +EM     S  + +F +++
Sbjct: 566 AIRLIDEMVGKRFSADSSTFQMLL 589



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
           IL+  +   R + +A  +L EM +    PD   +  L+  LC+    +EA  LF EM   
Sbjct: 377 ILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSS 436

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P L  +++LL G CK G L EA  +L  M+++  EPDIV+YN L+ G    GK+  A
Sbjct: 437 GLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVA 496

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL  ++   G  P   +YT++I+ L +    +EA   F +ME  G   +  +Y  +I G
Sbjct: 497 KELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQG 556

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           F +++       ++D M+ +    +  T+  ++L  E ++E+
Sbjct: 557 FLQNQDSSTAIRLIDEMVGKRFSADSSTF-QMLLDLESRDEI 597



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 2/244 (0%)

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +++A  +F  M R      VV +   +    K ++      + + M   G+  N  +   
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    +   +   + ++G+M K+G  PD   +N +I   C  GE+KEAV ++NEM    
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   S+  +++G    G    A +  ++M  +G    P       +++SL +   V  
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG--CKPNLVAYTTIIDSLCKDTLVND 250

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A D+ S +V +G   +V  ++  +H   S GH+ EA     +M+  +VMP   TF  L+ 
Sbjct: 251 AMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVD 310

Query: 569 GLKK 572
           GL K
Sbjct: 311 GLCK 314


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 239/498 (47%), Gaps = 39/498 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K+ +F A   +M EM +    P        V  +R+  +   +  A ++++
Sbjct: 288 YCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGN---IGSAFDLVN 344

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++ K+G  P  FV+  L++++CK+  + EA  LF+ M  +   P+   ++ L+  +CK G
Sbjct: 345 KVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRG 404

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL  A + L +M + G +  +  Y++L+SG+ ++GK+  A  L  EM   G  PN   YT
Sbjct: 405 KLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYT 464

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+  ++  A R + EM   G   +  T+T LISG C + ++    ++   M++ 
Sbjct: 465 SLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEW 524

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            ++PN++TY  ++  H K+       EL+ EM + G VPD   Y  +I   C  G + EA
Sbjct: 525 NVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEA 584

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL------LSAPQYG 491
               N+++          F  ++HG+  +G L +A +  +EM+GRG+       S   YG
Sbjct: 585 REFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYG 644

Query: 492 TLK---------------------------ALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            L+                            ++++  +A  ++MA  +W  +V++GC  N
Sbjct: 645 ILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPN 704

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           V  +T  I+ L   G + +A   C +M+ ++ +P  +T+A  +  L    N + A ++ +
Sbjct: 705 VVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHD 764

Query: 585 KVRKMAAERQITFKMYKR 602
            + +      +T+ +  R
Sbjct: 765 VLLEGFLANTVTYNILIR 782



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 197/437 (45%), Gaps = 9/437 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  LI S  K  K       + +M +   +  T   +  L+        ++
Sbjct: 388 PNDV----TYSILIDSFCKRGKLDVALHFLGKMTEVGIK-ATVYPYSSLISGHCKLGKLR 442

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A  + DEM   G +P+  ++  L+   CK   +  A +L+ EM  +   P+   FT+L+
Sbjct: 443 AAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C   ++ EA  +  +M +    P+ V YN L+ G+ + G    AFELL EM  KG  
Sbjct: 503 SGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLV 562

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  LI  LC   ++ EA     +++    + + + ++ L+ G+CK  ++D   + 
Sbjct: 563 PDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDA 622

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M+ RG+  + + Y  ++    ++++    ++L+ +M   G  PD   Y  +I    K
Sbjct: 623 CREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAK 682

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G LK A  +W+ M +    P   ++  +++G    G + +A    +EM+     S P  
Sbjct: 683 AGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASN--SLPNQ 740

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T    L+ L     +E A  +   ++ +G   N   + I I      G ++EA    ++
Sbjct: 741 NTYACFLDYLTSEGNIEKAIQLHD-VLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVN 799

Query: 551 MMDADVMPQPDTFAKLM 567
           M+D+ + P   +++ ++
Sbjct: 800 MIDSGISPDCISYSTII 816



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 203/466 (43%), Gaps = 42/466 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K+ K  A  +L +EM     KP ++   ++  L+  +     +  A  +  
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV---IYTSLISGYCKEGELHNAFRLYH 484

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+ + F  L+  LC  + + EA KLF EM E    P+   +  L+ G CKEG
Sbjct: 485 EMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEG 544

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             V A  +L +M + G  PD   Y  L+SG    G++++A E + +++ +    N   ++
Sbjct: 545 NTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFS 604

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C+  ++++A  A  EM   G   D+V Y+ LI G  + +      ++L  M  +
Sbjct: 605 ALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQ 664

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ + Y  ++ A+ K   L+    L   M   GC+P+V  Y  +I   CK+G + +A
Sbjct: 665 GLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKA 724

Query: 438 VNVWNEMEAASLSPGTDSFV----------------------------------VMVHGF 463
             +  EM A++  P  +++                                   +++ GF
Sbjct: 725 ELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGF 784

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G + EA E    M+  G+  +P   +   ++    R   ++ A  +W  ++ +G   
Sbjct: 785 CKLGRIQEAAEVLVNMIDSGI--SPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNP 842

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  A+   I+     G + +A     DMM   V P   T+  L+ G
Sbjct: 843 DTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 185/408 (45%), Gaps = 42/408 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDE 199
           + ALI  L    +      L  EM +    +I  EV + +L+          +A E+LDE
Sbjct: 498 FTALISGLCHANRMAEANKLFGEMVEW--NVIPNEVTYNVLIEGHCKEGNTVRAFELLDE 555

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGK 258
           M + G  PD + +  L+  LC    V EA +  ++++ E+ K +   F++LL+G+CKEG+
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGR 615

Query: 259 LVEA------------------KYVLV-----------------QMKDAGFEPDIVVYNN 283
           L +A                    VL+                 QM D G  PD V+Y  
Sbjct: 616 LDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTT 675

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           ++   A+ G +  AF L   M  +GC PN  +YT LI  LC++  M++A     EM  S 
Sbjct: 676 MIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASN 735

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              +  TY   +        I++  ++ D +++ G L N +TY  ++    K   ++E  
Sbjct: 736 SLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAA 794

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           E++  M   G  PD  +Y+ +I   C+ G+LKEA+ +W  M    ++P T ++  +++G 
Sbjct: 795 EVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGC 854

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              G L +A E   +M+ RG+   P   T  +L++       V    D
Sbjct: 855 CVTGELTKAFELRDDMMRRGV--KPNRATYNSLIHGTCLMSSVSSTAD 900



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/534 (21%), Positives = 229/534 (42%), Gaps = 60/534 (11%)

Query: 93  LALQHSGV--VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           +AL +S +   L+P   E+V+ +  D   L  R++ +     N+ HS   +  LI +L +
Sbjct: 46  VALNNSFISQTLKPHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQ 105

Query: 151 MRKF------------------GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
              +                  G   + ++  R  K    TT  F +L++ +   R    
Sbjct: 106 SNLYWPASSLLQTLLLRGLNPEGLFESFLDSYR--KCNFSTTLGFDLLIQTYVQNRRELD 163

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
            + V+  M   G  P       +L+ L +    + A  LFDE+     +P +  +T+++ 
Sbjct: 164 GLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVR 223

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
             C+    + A+ V+ +M+ +G +  +  YN  + G  +  ++ +A E+   +  KG   
Sbjct: 224 SLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEM-------------------------------- 339
           +  +Y  L+  LC++E+ E       EM                                
Sbjct: 284 DVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLV 343

Query: 340 ---ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
              ++ G    +  Y  LI+  CK  K+D    + ++M  +G+ PN +TY  ++ +  K+
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKR 403

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            +L+  +  +G+M ++G    V  Y+ +I   CKLG+L+ A ++++EM A  L P    +
Sbjct: 404 GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++ G+  +G L  A   + EM G+G+  +P   T  AL++ L  A ++  A  ++  +
Sbjct: 464 TSLISGYCKEGELHNAFRLYHEMTGKGI--SPNTYTFTALISGLCHANRMAEANKLFGEM 521

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V      N   + + I      G+   A     +M++  ++P   T+  L+ GL
Sbjct: 522 VEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGL 575



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I + +K       + L + M  E   P ++T   +  L+       ++ KA  + 
Sbjct: 672 LYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVT---YTALINGLCKIGLMDKAELLC 728

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
            EM      P++  + C LD L    ++++A +L D + E F  +   +  L+ G+CK G
Sbjct: 729 REMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLG 788

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  VLV M D+G  PD + Y+ ++  Y + G + +A +L + M  +G +P+  +Y 
Sbjct: 789 RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYN 848

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
            LI   C   ++ +A     +M R G + +  TY +LI G C
Sbjct: 849 FLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 890


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 213/451 (47%), Gaps = 17/451 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V     Y  LI    +   F   + L +EM  EK    T  ++ IL+R       +
Sbjct: 190 SPNVV----TYGTLIDGCCRQGDFLKAFRLFDEM-IEKKIFPTVVIYTILIRGLCGESRI 244

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
            +A  +   M   G  P+ + +  ++D  CK + VK+A +L+ EM  +   P++  F  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGIL 304

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK  ++V A+  L+ M   G  P+I VYN L+ GY + G +++A  L  E+ +   
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI 364

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y++LI+ LC +++MEEA+    EM++ G   + VTY TLI G+CK   +++  E
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M ++GI PN +T+  ++  + K  ++E  + L  EM   G +PDV  Y  +I    
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHF 484

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL----- 484
           K G  KEA  +  EM+ A L P   +   ++ G    G + +A + F    G        
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT 544

Query: 485 ------LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
                 L +P +    AL+  L    ++  A   +S +   G   +V+   + I   F  
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRA 604

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            H+++      D++   ++P    +  L +G
Sbjct: 605 MHLRDVMMLQADILKMGIIPNSSVYRVLAKG 635



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 212/489 (43%), Gaps = 50/489 (10%)

Query: 117 AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
             N     +   S++ +   +  +Y A+I  L+  + +     LM ++            
Sbjct: 49  TANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDL------------ 96

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
            +  ++    +R+      VL  +      P+  VFG L+ A  +   V+EA  ++ +M 
Sbjct: 97  -IQCLQNSRRSRICCSVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMD 153

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
               P+++    +L G  K+G+      V   M   G  P++V Y  L+ G  + G    
Sbjct: 154 --VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLK 211

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           AF L  EM  K   P    YT+LI+ LC   ++ EA   F  M  SG   ++ TY T++ 
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G+CK   + +  E+   M+  G+LPN +T+  ++    K +E+    + + +M   G VP
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           ++  YN +I   CK G L EA+++ +E+E   + P   ++ +++ G  G   + EA    
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 477 KEMVGRGLLS---------------------------------APQYGTLKALLNSLLRA 503
           +EM  +G L                                   P   T   L++   +A
Sbjct: 392 QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            K+E A  +++ +V KG   +V A+T  I   F +G+ KEA     +M +A + P   T 
Sbjct: 452 GKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 564 AKLMRGLKK 572
           + L+ GL K
Sbjct: 512 SCLIDGLCK 520



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 160/327 (48%), Gaps = 19/327 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY  LI    K        +L  E+ K +  P + T   + IL++       +++A  +L
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFT---YSILIKGLCGVDRMEEADGLL 391

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM K G  P+   +  L+D  CK  ++++A ++  +M E+  +P++  F++L+ G+CK 
Sbjct: 392 QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK+  A  +  +M   G  PD+V Y  L+ G+ + G   +AF L KEM+  G  PN  + 
Sbjct: 452 GKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 317 TVLIQALCRMEKMEEANRAFV-------------EMERSGCEADVVTYTTLISGFCKSRK 363
           + LI  LC+  ++ +A + F+             E++RS C  + V YT LI G C   +
Sbjct: 512 SCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGR 571

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           I +  +    M   G+ P+  T + I+  H +   L + + L  ++ K+G +P+ S Y V
Sbjct: 572 IFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRV 631

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLS 450
           + +   + G LK A+    ++    + 
Sbjct: 632 LAKGYEESGYLKSALRCSEDLSGIGIG 658



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 165/395 (41%), Gaps = 54/395 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++    K+        L +EM  +   P ++T   F IL+        +  A + L 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVT---FGILIDGLCKTDEMVSARKFLI 322

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M  +G  P+ FV+ CL+D  CK  ++ EA  L  E+ +    P +  ++ L+ G C   
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  +L +MK  GF P+ V YN L+ GY + G M  A E+  +M  KG +PN  +++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+  KME A   + EM   G   DVV YT LI G  K       + +   M + 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 378 GILPNQLTY----------------LHIMLAH-------EKKEELEECV----------- 403
           G+ PN  T                 + + LA         K  EL+  +           
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTAL 562

Query: 404 --------------ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
                         +   +MR  G  PDV    V+I+   +   L++ + +  ++    +
Sbjct: 563 IQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGI 622

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            P +  + V+  G+   G L  A    +++ G G+
Sbjct: 623 IPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGI 657


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 184/343 (53%), Gaps = 7/343 (2%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           F   +   CK S V +A KL DEMR +  KP +  +  L+ G CKEG+L EA   L  M 
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
             G +P+++ +N +L      G+  DA +LL +M RKGC P+  ++ +LI  LCR   + 
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLG 204

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
            A     +M   GC  + ++Y  L+ GFCK +K+DR  E LD M+ RG  P+ +TY  ++
Sbjct: 205 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 264

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
            A  K  +++  VE++ ++   GC P +  YN VI    K+G+ + A+ + +EM    L 
Sbjct: 265 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLK 324

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++  +V G   +G + EA ++F ++ G G+   P   T  +++  L ++++ + A 
Sbjct: 325 PDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI--RPNAITYNSIMLGLCKSRQTDRAI 382

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
           D  + +++K C+     +TI I  +   G  KEA    LD+++
Sbjct: 383 DFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA----LDLLN 421



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 175/344 (50%), Gaps = 6/344 (1%)

Query: 145 IKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +++  K    G    L++EMR +  KP ++T   + +L+        + +AI+ L+ MP 
Sbjct: 89  VQTTCKESGVGQAMKLLDEMRNKGSKPDVVT---YNVLINGICKEGRLDEAIKFLNNMPS 145

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVE 261
           YGC+P+      +L ++C      +A KL  +M R+   PS+  F  L+   C++G L  
Sbjct: 146 YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGR 205

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A  +L +M   G  P+ + YN LL G+ +  KM  A E L  M  +GC P+  +Y  L+ 
Sbjct: 206 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLT 265

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           ALC+  K++ A     ++   GC   ++TY T+I G  K  K +R  ++LD M ++G+ P
Sbjct: 266 ALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKP 325

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + +TY  ++    ++ +++E ++   ++  +G  P+   YN ++   CK  +   A++  
Sbjct: 326 DIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFL 385

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             M +    P   ++ +++ G   +G   EA +   E+  RGL+
Sbjct: 386 AYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLV 429



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 161/329 (48%), Gaps = 2/329 (0%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL  F+  +   CKE  + +A  +L +M++ G +PD+V YN L++G  + G++ +A + L
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M   GC PN  ++ ++++++C   +  +A +   +M R GC   VVT+  LI+  C+ 
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
             + R  +IL+ M   G  PN L+Y  ++    K+++++  +E +  M   GC PD+  Y
Sbjct: 201 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 260

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N ++   CK G++  AV + N++ +   SP   ++  ++ G    G    A +   EM  
Sbjct: 261 NTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR 320

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
           +GL   P   T  +L++ L R  KV+ A   +  +   G   N   +   +  L  +   
Sbjct: 321 KGL--KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             A  +   M+     P   T+  L+ G+
Sbjct: 379 DRAIDFLAYMISKRCKPTEATYTILIEGI 407



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 2/259 (0%)

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           + ++  +Q  C+   + +A +   EM   G + DVVTY  LI+G CK  ++D   + L++
Sbjct: 83  SGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 142

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  PN +T+  I+ +        +  +L+ +M + GC P V  +N++I   C+ G 
Sbjct: 143 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 202

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L  A+++  +M     +P + S+  ++HGF  +  +  A EY   MV RG    P   T 
Sbjct: 203 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG--CYPDIVTY 260

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             LL +L +  KV++A ++ + + +KGC   +  +   I  L   G  + A     +M  
Sbjct: 261 NTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR 320

Query: 554 ADVMPQPDTFAKLMRGLKK 572
             + P   T++ L+ GL +
Sbjct: 321 KGLKPDIITYSSLVSGLSR 339



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 2/192 (1%)

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+  + + ++L+ EMR  G  PDV  YNV+I   CK G L EA+   N M +    P   
Sbjct: 94  KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI 153

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           +  +++      G  ++A +   +M+ +G   +P   T   L+N L R   +  A D+  
Sbjct: 154 THNIILRSMCSTGRWMDAEKLLSDMLRKG--CSPSVVTFNILINFLCRQGLLGRAIDILE 211

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            +   GC  N  ++   +H       +  A  Y   M+     P   T+  L+  L K  
Sbjct: 212 KMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 271

Query: 575 NRQIAAEITEKV 586
              +A EI  ++
Sbjct: 272 KVDVAVEILNQL 283



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  +I  LSK+ K      L++EMR++  KP +IT    V  + R      V +AI+  
Sbjct: 294 TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK---VDEAIKFF 350

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            ++   G  P+   +  ++  LCK+     A      M  +R KP+   +T L+ G   E
Sbjct: 351 HDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYE 410

Query: 257 GKLVEAKYVLVQMKDAGF 274
           G   EA  +L ++   G 
Sbjct: 411 GLAKEALDLLNELCSRGL 428


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 219/452 (48%), Gaps = 14/452 (3%)

Query: 126 MWASKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILM 181
           M  SK  N     DV  +  LIK+L K  +      ++EEM     KP  IT   F  LM
Sbjct: 144 MLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEIT---FTTLM 200

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FK 240
           + F     +  A+++  +M  YGC         L++  CK   V+EA +   E+ E  F 
Sbjct: 201 QGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFS 260

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P    F SL+ G+C+ G + +A  ++  M + GF+PD+  YN+L+SG  ++G+   A E+
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEI 320

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L++M  + C PN  +Y  LI ALC+  ++E A      +   G   DV T+ TLI G C 
Sbjct: 321 LQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCL 380

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIGCVPDV 418
           S+  D   E+ + M  +G  P++ TY  ++  L +E++  L+E + L+ EM   GC  + 
Sbjct: 381 SKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERR--LKEALMLLKEMESSGCARNA 438

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   CK   +++A  ++++ME   +S  + ++  ++ G      + EA +   +
Sbjct: 439 VVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQ 498

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  GL   P   T  +LL    R   +E A D+   + + GCE +++ +   I  L   
Sbjct: 499 MIMEGL--KPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRA 556

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           G V  A      +    ++  P  +  +++ L
Sbjct: 557 GRVDVASKLLRSVQMKGIVLTPHAYNPVIQAL 588



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 207/459 (45%), Gaps = 41/459 (8%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           H       L+  L++   F ++  L++++ K    +     F  L++ F +   ++  ++
Sbjct: 53  HPLPPNETLLLQLTQSSSFDSITTLLKQL-KSSGSIPNATTFATLIQSFTNFHEIENLLK 111

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           +L+   + G +PD   +   L+AL +++ +K    L  +M  E     +  F  L+   C
Sbjct: 112 ILEN--ELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALC 169

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K  +L  A  +L +M + G +PD + +  L+ G+ + G +  A ++ K+M   GC     
Sbjct: 170 KAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNV 229

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           S  VL+   C+  ++EEA R  +E+   G   D VT+ +L++GFC+   ++   +I+D M
Sbjct: 230 SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFM 289

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           I++G                                     PDV  YN +I   CKLGE 
Sbjct: 290 IEKGF-----------------------------------DPDVYTYNSLISGMCKLGEF 314

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           ++A+ +  +M     SP T ++  ++     +  +  A +  + +V +GLL  P   T  
Sbjct: 315 EKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLL--PDVCTFN 372

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+  L  ++  ++A +++  +  KGC+ + + ++I I SL     +KEA     +M  +
Sbjct: 373 TLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESS 432

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593
                   +  L+ GL K    + A EI +++  +   R
Sbjct: 433 GCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSR 471



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  LI +L K  +  A   L   +   K  L     F  L++    ++   
Sbjct: 331 PNTV----TYNTLISALCKENEIEAATDL-ARILVSKGLLPDVCTFNTLIQGLCLSKNQD 385

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+E+ +EM   GC+PDEF +  L+D+LC    +KEA  L  EM       +   + +L+
Sbjct: 386 IAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLI 445

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK  ++ +A+ +  QM+  G     V YN L+ G  +  ++ +A +L+ +M  +G  
Sbjct: 446 DGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLK 505

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  L+   CR+  +E+A      M  +GCE D+ TY TLI G C++ ++D   ++
Sbjct: 506 PDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKL 565

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L S+  +GI+     Y  ++ A   ++  +E + L  EM +    PD   + +V R  C 
Sbjct: 566 LRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCN 625

Query: 431 -LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
             G ++EA++   EM    + P   SF     GFL +G
Sbjct: 626 GGGPIQEAIDFTVEMLEKGILPEFPSF-----GFLAEG 658


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 224/493 (45%), Gaps = 44/493 (8%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ WA  Q +Y H    Y  L++ L+K  +   V+                         
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYG------------------------ 38

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
                         ++M   GC P+ + +G LL +LC+    +EA  +F  M  +   P+
Sbjct: 39  ------------TYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPN 86

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  ++ L+ G C+  K+ EA  +L +M D G +P++V Y +LLSG  +MGK+ +A +L  
Sbjct: 87  VFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFS 146

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M  +GC P+   Y VLI    +   M EA R F EM   GC   V TY +L+SGF +  
Sbjct: 147 RMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKG 206

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +  R   +   M+++G +PN  T+ +++    K  ++ E   L  EMR +GC PDV +YN
Sbjct: 207 EFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYN 266

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +IR  C  G+  EA  +  EM  + + P   S+ +++ G+   G L  A + F E+   
Sbjct: 267 TLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKS 326

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P   +   +++ L RA KV  A  V+  ++  G   +       +  L     + 
Sbjct: 327 GL--EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLT 384

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR----QIAAEITEKVRKMAAE-RQITF 597
           E+C     M+  + +P    +  LM  L K        +I  E+TE+      E  ++  
Sbjct: 385 ESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444

Query: 598 KMYKRRGERDLKE 610
           +  +R  ++D  E
Sbjct: 445 ETLRRSDDKDAAE 457


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 225/460 (48%), Gaps = 11/460 (2%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            LI    K  +     + ++E   E  +P   T    V  + +   A   K A+EV+D M
Sbjct: 278 VLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHA---KHAMEVVDAM 334

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G +PD + +  L+  LCK   ++EA K+ D+M  R   P+   + +++   CKE ++
Sbjct: 335 LLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRV 394

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +   +   G  PD+  +N+L+ G         A +L +EM+ KGC P+  +Y +L
Sbjct: 395 DEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNML 454

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I +LC   K+EEA     EME +GC  +VV Y TLI GFCK+++I+   EI D M  +G+
Sbjct: 455 IDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGV 514

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             + +TY  ++    K + +E+  +LM +M   G  PD   YN ++   CK G++K+A +
Sbjct: 515 SRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAAD 574

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +   M ++  +P   ++  ++ G    G +  A    + +  +G++  P       ++ +
Sbjct: 575 IVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPH--AYNPVIQA 632

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS-NGHVKEACSYCLDMMDADVMP 558
           L +  +   A  ++  ++ K    +   + I    L +  G + EA  + ++M++   +P
Sbjct: 633 LFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIP 692

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA--AERQIT 596
           +  +F  L  GL  L       ++ + + + A  +ER+I+
Sbjct: 693 EFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREIS 732



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 130/537 (24%), Positives = 230/537 (42%), Gaps = 75/537 (13%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           R + WASKQPN+V S  VY  +++ L K   F  +  ++EEM+    +     +F+I + 
Sbjct: 82  RVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEF-DRGIFLIFVE 140

Query: 183 RFASARMVKKAIEVLDEM-PKYGCEPDEFVFGCLLD------------------------ 217
            +    +  + + ++  M  +Y  +PD   +  LL+                        
Sbjct: 141 SYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIR 200

Query: 218 -----------ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYV 265
                      ALCK   V+ A  + +EM      P    FT+++ G+ + G L  A  +
Sbjct: 201 HDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRI 260

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
             QM + G     V  N L++G+ + G++  A   ++E   +G  P+  +Y  L+  LC+
Sbjct: 261 KEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCK 320

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
           +   + A      M   G + D+ TY +LISG CK  +I+   +ILD M+ R   PN +T
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVT 380

Query: 386 YLHIMLAHEKKEELEECVE-----------------------------------LMGEMR 410
           Y  I+ +  K+  ++E  E                                   L  EM+
Sbjct: 381 YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMK 440

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             GC PD   YN++I   C   +L+EA+N+  EME    +     +  ++ GF     + 
Sbjct: 441 GKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIE 500

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA E F EM  +G+  +    T   L++ L ++++VE A  +   ++ +G   + + +  
Sbjct: 501 EAEEIFDEMELQGV--SRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNS 558

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            +      G +K+A      M  +   P   T+A L+ GL K    Q+A+ +   ++
Sbjct: 559 LLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQ 615


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 235/504 (46%), Gaps = 57/504 (11%)

Query: 112 NRCGDAGNL--GYRYY-MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE- 167
           +R GDA  +  G R +  W    PN +     Y AL+  L    +     AL E M K  
Sbjct: 64  SRIGDAQTVFDGMRKHGFW----PNRI----TYNALLSGLCNGGRMSDAQALYERMIKAG 115

Query: 168 -KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P ++T   +  L+  F     + +A+++ D   K G  PD   +  L++  CK   + 
Sbjct: 116 YSPDVVT---YNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 172

Query: 227 EAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           EA ++   M  E   P +  + SL+ G CK G++ EA+ ++V   D GF P+++ Y+ L+
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLI 229

Query: 286 SGYA-QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           SG   ++ ++  A +LL++M   GC P+  SY  LI  L R + + EA + F  + R G 
Sbjct: 230 SGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGY 289

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           E +V TY  LI G  K  +++  +E+   +++ G+ P+ +TY   +    K   +E+ + 
Sbjct: 290 EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALL 349

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           ++ +M + GCVPDV ++N VI   CK   + EA  + + MEA   SP   SF  ++ G  
Sbjct: 350 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 409

Query: 465 GQGCLIEACEYFKEMVGRG--------------LLSAPQYGTLK---------------- 494
             G   +A   FKEM+ RG              L  A Q G +K                
Sbjct: 410 RAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVP 469

Query: 495 ------ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                 AL++ L +A K++ A+ +   +  KGC  NVY +   I  L     V EA    
Sbjct: 470 DVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELF 529

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
           + M++   +P   T+  ++  L K
Sbjct: 530 VAMVEKGCVPDTITYGTIISALCK 553



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 222/442 (50%), Gaps = 11/442 (2%)

Query: 135 VHSYDVYRA--LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           ++S D Y    L++SL K  K       +E++  +    I+T  F I +     A  +  
Sbjct: 11  IYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDIST--FNIYISGLCRASRIGD 68

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
           A  V D M K+G  P+   +  LL  LC    + +A  L++ M +  + P +  + +LL+
Sbjct: 69  AQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLH 128

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+CK GKL EA  +       GF PD+V YN L++G+ +  K+ +A  +L+ M  +   P
Sbjct: 129 GFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVP 188

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS-RKIDRCYEI 370
           +  +Y  L+  LC+  +++EA    V+    G   +V+TY+TLISG C+  R+++   ++
Sbjct: 189 DVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQL 245

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L+ M+  G  P+ ++Y  ++    +++ + E ++L G + + G  P+V  YN++I    K
Sbjct: 246 LEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLK 305

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              + EA  +++ +    L P   ++ V + G    G + +A    K+M  +G +  P  
Sbjct: 306 EDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCV--PDV 363

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            +  A++N L + ++V+ A+ + S +  KGC  N  ++   I      G  K+A +   +
Sbjct: 364 VSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKE 423

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M+   V P   T+  L+ GL K
Sbjct: 424 MLKRGVKPTVVTYNILVDGLCK 445



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 225/500 (45%), Gaps = 53/500 (10%)

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--P 169
            R  DA  L Y   + A   P+ V     Y  L+    K+ K      + +   K    P
Sbjct: 99  GRMSDAQAL-YERMIKAGYSPDVV----TYNTLLHGFCKVGKLDEALKIFDGAVKRGFVP 153

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            ++T   +  L+  F  A  + +A  +L  M      PD   +  L++ LCKN  V EA 
Sbjct: 154 DVVT---YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEAR 210

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE-AKYVLVQMKDAGFEPDIVVYNNLLSGY 288
            L   + + F P++  +++L+ G C+E + +E A+ +L +M   G +PDIV YN L+ G 
Sbjct: 211 MLI--VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGL 268

Query: 289 A-----------------------------------QMGKMTDAFELLKEMRRKGCDPNA 313
           A                                   +  ++ +AFEL   + + G +P+A
Sbjct: 269 AREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDA 328

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +YTV I  LC+  ++E+A     +M+  GC  DVV++  +I+G CK +++D    +L  
Sbjct: 329 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 388

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL-- 431
           M  +G  PN +++  ++    +  + ++ +    EM K G  P V  YN+++   CK   
Sbjct: 389 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 448

Query: 432 -GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G +KEA+ +++ M      P   ++  ++ G    G L +A      M  +G +  P  
Sbjct: 449 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCI--PNV 506

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +L++ L    KV+ A +++  +V KGC  +   +   I +L     V +A +    
Sbjct: 507 YTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDG 566

Query: 551 MMDADVMPQPDTFAKLMRGL 570
            ++A V+P    +  L+ GL
Sbjct: 567 SLEAGVVPTSGMYFSLIDGL 586



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 149/306 (48%), Gaps = 9/306 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K  +    + L   + K   +P  IT  VF+        A  V+ A+ +L 
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI---DGLCKAGRVEDALLMLK 352

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M + GC PD      +++ LCK   V EA  L   M  +   P+   F +L+ G C+ G
Sbjct: 353 DMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAG 412

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA---QMGKMTDAFELLKEMRRKGCDPNAN 314
           K  +A     +M   G +P +V YN L+ G     Q G++ +A  L   M  KG  P+  
Sbjct: 413 KWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVV 472

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y+ LI  L +  K+++A R    ME  GC  +V TY +LISG C   K+D   E+  +M
Sbjct: 473 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAM 532

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           +++G +P+ +TY  I+ A  K+E +++ + L     + G VP    Y  +I   C +  +
Sbjct: 533 VEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARV 592

Query: 435 KEAVNV 440
            EA+ +
Sbjct: 593 DEALKL 598



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 9/272 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y   I  L K  +      ++++M ++   P +++    +         + V +A  +L 
Sbjct: 331 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVI---NGLCKEKRVDEAEVLLS 387

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK-- 255
            M   GC P+   F  L+   C+    K+A   F EM +R  KP++  +  L+ G CK  
Sbjct: 388 GMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKAR 447

Query: 256 -EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            EG++ EA  +   M + G  PD+V Y+ L+ G  + GK+ DA  LL  M  KGC PN  
Sbjct: 448 QEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVY 507

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y  LI  LC ++K++EA   FV M   GC  D +TY T+IS  CK   +D+   + D  
Sbjct: 508 TYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGS 567

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           ++ G++P    Y  ++        ++E ++L+
Sbjct: 568 LEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 5/166 (3%)

Query: 141 YRALIKSLSKMRKFGAV---WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  L+  L K R+ G +     L + M  EK ++     +  L+     A  +  A  +L
Sbjct: 436 YNILVDGLCKARQEGRIKEAITLFDAM-IEKGRVPDVVTYSALIDGLGKAGKLDDARRLL 494

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
             M   GC P+ + +  L+  LC    V EA +LF  M E+   P    + +++   CK+
Sbjct: 495 GAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQ 554

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
             + +A  +     +AG  P   +Y +L+ G   + ++ +A +LL+
Sbjct: 555 EMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 207/416 (49%), Gaps = 3/416 (0%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           Y Y + ++   N   +   +  +IK+L K+R       +   M  E+  L     +  LM
Sbjct: 171 YDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGM-PERKCLPDGYTYCTLM 229

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FK 240
                   + +A+ +LDEM   GC P   ++  L+D LCK   +    KL D M  +   
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV 289

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P+   + +L++G C +GKL +A  +L +M  +   P+ V Y  L++G  +  + TDA  L
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL 349

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L  M  +G   N + Y+VLI  L +  K EEA   + +M   GC+ ++V Y+ L+ G C+
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             K +   EIL+ MI  G LPN  TY  +M    K    EE V++  EM K GC  +   
Sbjct: 410 EGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFC 469

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y+V+I   C +G +KEA+ VW++M    + P T ++  ++ G  G G +  A + + EM+
Sbjct: 470 YSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529

Query: 481 GR-GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +    S P   T   LL+ L   + +  A D+ + ++ +GC+ +V     ++++L
Sbjct: 530 CQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 193/434 (44%), Gaps = 9/434 (2%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM-P 201
           ++I+S +    F +V  L+  +R E  ++I    F+++ R +  A +  KA+++   M  
Sbjct: 82  SMIESYANSGDFDSVEKLLSRIRLEN-RVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVD 140

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-----EMRERFKPSLRHFTSLLYGWCKE 256
           ++ C+     F  +L+ +          + +D      M     P+   F  ++   CK 
Sbjct: 141 EFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKL 200

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             +  A  V   M +    PD   Y  L+ G  +  ++ +A  LL EM+ +GC P+   Y
Sbjct: 201 RFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIY 260

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            VLI  LC+   +    +    M   GC  + VTY TLI G C   K+D+   +L+ M+ 
Sbjct: 261 NVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVS 320

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
              +PN +TY  ++    K+    + V L+  M + G   +   Y+V+I    K G+ +E
Sbjct: 321 SKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEE 380

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+++W +M      P    + V+V G   +G   EA E    M+  G L  P   T  +L
Sbjct: 381 AMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCL--PNAYTYSSL 438

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +    +    E A  VW  +   GC  N + +++ I  L   G VKEA      M+   +
Sbjct: 439 MKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGI 498

Query: 557 MPQPDTFAKLMRGL 570
            P    ++ +++GL
Sbjct: 499 KPDTVAYSSIIKGL 512


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 209/409 (51%), Gaps = 3/409 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
           +L+     AR++ +AIE+   M   G  PD + +  L++  C     +EA  +  EM + 
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             KP    + +L+ G+ ++G + +A  +  +M   G E +++++N LL+G  + GKM  A
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 365

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E+++EM  KG +P++ +Y++LI+  CR + M  A     EM++      V+TY+ +I+G
Sbjct: 366 LEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIING 425

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C+   +     IL  M+  G+ PN + Y  +M AH K+  +EE   ++  MR+ G +PD
Sbjct: 426 LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPD 485

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN +I   CK   ++EA     EM    L P   ++   + G+   G +  A  YF 
Sbjct: 486 VFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFN 545

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+  G+L  P  G   AL+    +   V  A  V+  I+++    +V  +++ IH L  
Sbjct: 546 EMLSCGVL--PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           NG + EA     ++ +  ++P   T+  L+ G  K  N   A+++ E++
Sbjct: 604 NGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 218/464 (46%), Gaps = 40/464 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           ++  L+  + K  K      +M+EM  EK     ++ + +L+      + + +A E+LDE
Sbjct: 348 IWNTLLNGVCKAGKMEKALEIMQEMM-EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 406

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M K    P    +  +++ LC+  +++    +  EM     KP+   +T+L+    KEG+
Sbjct: 407 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 466

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + E++ +L +M++ G  PD+  YN+L+ G+ +  +M +A   L EM  +   PNA++Y  
Sbjct: 467 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 526

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK------------------ 360
            I    +  +ME A+R F EM   G   +V  YT LI G CK                  
Sbjct: 527 FIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR 586

Query: 361 -----------------SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
                            + K+   + I   + ++G+LPN  TY  ++    K+  +++  
Sbjct: 587 VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKAS 646

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +L+ EM   G  PD+  YN++I   CK GE++ A N+++++E   L+P   ++  MV G+
Sbjct: 647 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 706

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                   A +  +EM+ RG+   P       +LN   + +K E A D++  ++ KG   
Sbjct: 707 CKSKNPTAAFQLLEEMLLRGV--PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAS 764

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            V ++   I     +G ++EA     +M++   +P   T+  L+
Sbjct: 765 TV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 807



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 227/496 (45%), Gaps = 43/496 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI+   + +     + L++EM+K K  P ++T  V +  + R  +   ++    +L
Sbjct: 383 TYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN---LQGTNAIL 439

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM   G +P+  V+  L+ A  K   V+E+  + + MRE+   P +  + SL+ G+CK 
Sbjct: 440 REMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKA 499

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ EA+  L++M +    P+   Y   + GY++ G+M  A     EM   G  PN   Y
Sbjct: 500 KRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIY 559

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI+  C+   + EA   F  +       DV TY+ LI G  ++ K+   + I   + +
Sbjct: 560 TALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE 619

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+LPN  TY  ++    K+  +++  +L+ EM   G  PD+  YN++I   CK GE++ 
Sbjct: 620 KGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIER 679

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A N+++++E   L+P   ++  MV G+        A +  +EM+ RG+   P       +
Sbjct: 680 AKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV--PPDAFIYNVI 737

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI-------------------WIHSLFS 537
           LN   + +K E A D++  ++ KG    V   T+                    I   F 
Sbjct: 738 LNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFI 797

Query: 538 NGHVK---------------EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN-RQIAAE 581
             HV                EA    L+M + +VMP   T+  L+ G   + N  +++A 
Sbjct: 798 PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 857

Query: 582 ITEKVRKMAAERQITF 597
             E V K     ++T+
Sbjct: 858 FEEMVAKGIEPDKMTY 873



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 220/460 (47%), Gaps = 17/460 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K ++       + EM  R+ +P   T   F+     ++ A  ++ A    +
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI---DGYSKAGEMEIADRYFN 545

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+  ++  L++  CK  +V EA  +F   +  R    ++ ++ L++G  + G
Sbjct: 546 EMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNG 605

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  +  ++++ G  P+   YN+L+SG  + G +  A +LL+EM  KG +P+  +Y 
Sbjct: 606 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 665

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LC+  ++E A   F ++E  G   + VTY  ++ G+CKS+     +++L+ M+ R
Sbjct: 666 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 725

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+   Y  I+    K+E+ E+ ++L  EM + G    VS +N +I   CK G+L+EA
Sbjct: 726 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEA 784

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            ++  EM      P   ++  ++      G + EA   + EM  R ++  P   T  +LL
Sbjct: 785 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM--PTAKTYTSLL 842

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +       +     ++  +V KG E +   + + I +    G+V EAC    D +    M
Sbjct: 843 HGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL-KDEILVKGM 901

Query: 558 PQPDTF-------AKLMRGLKKLYNRQIAAEITEKVRKMA 590
           P    F       + + RG +   N   AAE+   + K  
Sbjct: 902 PMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFG 941



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 175/346 (50%), Gaps = 3/346 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y ALI+   K       +++   +   +  L   + + +L+   +    + +A  +  E
Sbjct: 558 IYTALIEGHCKEGNVTEAFSVFRFILSRR-VLQDVQTYSVLIHGLSRNGKMHEAFGIFSE 616

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           + + G  P+ F +  L+   CK  +V +A++L +EM  +   P +  +  L+ G CK G+
Sbjct: 617 LQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE 676

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +  AK +   ++  G  P+ V Y  ++ GY +    T AF+LL+EM  +G  P+A  Y V
Sbjct: 677 IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNV 736

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++   C+ EK E+A   F EM   G  A  V++ TLI G+CKS K+     +L+ MI++ 
Sbjct: 737 ILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ 795

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            +PN +TY  ++  + K   + E   L  EM++   +P    Y  ++     +G + E  
Sbjct: 796 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 855

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            ++ EM A  + P   ++ VM+  +  +G ++EAC+   E++ +G+
Sbjct: 856 ALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 901



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 17/292 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI  L K  +      L +++  R   P  +T   +  ++  +  ++    A ++L
Sbjct: 663 TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT---YAAMVDGYCKSKNPTAAFQLL 719

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
           +EM   G  PD F++  +L+  CK    ++A  LF EM E+   S   F +L+ G+CK G
Sbjct: 720 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSG 779

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL EA ++L +M +  F P+ V Y +L+    + G M +A  L  EM+ +   P A +YT
Sbjct: 780 KLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYT 839

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+     +  M E +  F EM   G E D +TY  +I  +C+   +    ++ D ++ +
Sbjct: 840 SLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVK 899

Query: 378 GI---------LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           G+         LP   T   I    +    ++E  E++  M K G V + ++
Sbjct: 900 GMPMKSGFRLGLP---TCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTS 948



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 166/380 (43%), Gaps = 32/380 (8%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P+   F  L+  + K G LVEA  V +  K+  F P ++  N+LL    +  K+   +++
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM-------------ERS----G 343
              M      P+  +YT +I A C++  +++A R  +EM             +RS    G
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              D+ TY  LI+GFC  ++      +L  MI  G+ P  +TY  ++    ++ ++E+  
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAF 331

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +  EM   G   ++  +N ++   CK G++++A+ +  EM    + P + ++ +++ G 
Sbjct: 332 RIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 391

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                +  A E   EM  R L  AP   T   ++N L R   ++    +   +V  G + 
Sbjct: 392 CRGQNMARAFELLDEMKKRKL--APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKP 449

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           N   +T  + +    G V+E+      M +  ++P    +  L+ G              
Sbjct: 450 NAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC------------ 497

Query: 584 EKVRKMAAERQITFKMYKRR 603
            K ++M   R    +M +RR
Sbjct: 498 -KAKRMEEARTYLMEMLERR 516


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 154/556 (27%), Positives = 244/556 (43%), Gaps = 75/556 (13%)

Query: 68  NEFSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYM 126
           +EF H  V ++ R++    +  PK E  L+H    L P L   V+ R  D   +   ++ 
Sbjct: 127 SEFRHPIVREVCRLISLRSNWNPKFEENLRHLLRSLNPRLVCAVL-RSQDDERIALDFFY 185

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           WA +Q  Y H   VY  ++  LSK R       ++  M +   +  + E F  +M  ++ 
Sbjct: 186 WADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIER-SPEAFSYVMVSYSR 244

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF 246
           A M++ A+ +L  M K G EPD         ++C  +                       
Sbjct: 245 AGMLRNALRILTLMQKAGVEPDL--------SICNTA----------------------- 273

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
              +Y   K  KL +A   L +MK AG EPDIV YN L+ GY  + ++ DA EL+ EM  
Sbjct: 274 ---IYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPF 330

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANR-------------------------------- 334
           KGC P+  SY  ++  LC+  K+EE  R                                
Sbjct: 331 KGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHAD 390

Query: 335 -AFV---EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
            A V   E E  G   D V Y+ ++  FCK++ ID+   ++  M  +G  P+ +TY  I+
Sbjct: 391 DALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAII 450

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               +  +++E  +++ +M K GC P+   Y V++   C  G+  EA  + N  E    +
Sbjct: 451 DGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWT 510

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++  ++HG   +G L EAC+  +EM+ +G L  P    +  L+ SL R Q V  AK
Sbjct: 511 PNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPV--DINLLIQSLCRNQNVVGAK 568

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
                 + KGC +NV  +T  I+     G +  A S   DM  ++  P   T+  L   L
Sbjct: 569 KYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDAL 628

Query: 571 KKLYNRQIAAEITEKV 586
            K      A+E+  K+
Sbjct: 629 GKKSRLDEASELIVKM 644



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 155/318 (48%), Gaps = 2/318 (0%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           +  N +     Y  LI +LSK          + E  +EK   I    +  ++  F   + 
Sbjct: 365 QNSNLIPDQVTYNTLIYALSKHGHADDALVFLREA-EEKGFHIDKVGYSAVVDSFCKNKN 423

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           + KA  ++ +M   GC PD   +  ++D  C+   + EA K+  +M +   KP+   +T 
Sbjct: 424 IDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTV 483

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL G C  GK +EA+ ++   ++  + P+ + Y+ ++ G  + GK+++A +L +EM  KG
Sbjct: 484 LLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKG 543

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN     +LIQ+LCR + +  A +   E    GC  +VV +T++I GFC+   +D   
Sbjct: 544 FLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAAL 603

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L+ M      P+ +TY  +  A  KK  L+E  EL+ +M   G  P    Y  VI   
Sbjct: 604 SMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRF 663

Query: 429 CKLGELKEAVNVWNEMEA 446
           C+ G + + + +  +M A
Sbjct: 664 CQWGRVDDMMKLLEKMIA 681


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 217/434 (50%), Gaps = 14/434 (3%)

Query: 73  DVEKIFRILKKFHSRLPKLELA-LQHSGVVLRP--GLTERVINRCGDAGNLGYRYYMWAS 129
           +++ I ++LKK   R P  ELA L   G+  +P  GL  +V+NR  +       ++ WA 
Sbjct: 93  ELDAITKVLKK---RYPSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAK 149

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
            Q  Y HS ++   ++  L K + F  +  L+EEM K +   +T E    ++RR A AR 
Sbjct: 150 SQTGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARK 209

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
            + AIE    M K+G   D      L+DAL K  SV+ A K+  E +     S   F  L
Sbjct: 210 HEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVL 269

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++GWC+  K   A+  +  MK+ GFEPD+  Y + +  Y          ++L+EMR  GC
Sbjct: 270 MHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGC 329

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PNA +YT ++  L +  ++ +A   + +M+  GC AD   Y+ +I    K+ ++    +
Sbjct: 330 PPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACD 389

Query: 370 ILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
           + + M ++G++ + +TY   +    AH ++   E  + L+ EM    C P+V  Y+ +++
Sbjct: 390 VFEDMPKQGVVRDVVTYNTMISTACAHSRE---ETALRLLKEMEDGSCKPNVGTYHPLLK 446

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + CK   +K    + + M    +SP   ++ ++V+     G + +A  + +EMV +G   
Sbjct: 447 MCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGF-- 504

Query: 487 APQYGTLKALLNSL 500
            P+  TLK L   L
Sbjct: 505 TPKPSTLKGLAGEL 518



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 40/234 (17%)

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I+ L +  K E+A  AF  M++ G   D      LI    K   ++  ++++  +  +G
Sbjct: 200 VIRRLAKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVV--LEFKG 257

Query: 379 ILP-NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           ++P +  ++  +M    +  + +   + M +M+++G  PDV +Y   I   C   + ++ 
Sbjct: 258 LIPLSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKV 317

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V  EM                      GC   A  Y   M+  G              
Sbjct: 318 DQVLEEMRE-------------------NGCPPNAVTYTTVMLHLG-------------- 344

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               +A ++  A +V+  +   GC  +   ++  I  L   G +K+AC    DM
Sbjct: 345 ----KAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDM 394


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 218/486 (44%), Gaps = 40/486 (8%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEE--MRKEKPQLITTEVFVILMRRFASARMVK 191
           Y      Y  +IKSL +M +    + ++++  +R  KP++    V+ IL R F     +K
Sbjct: 156 YAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEV---SVYTILTRAFCKTGRLK 212

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+E+   +P     PD   +  ++   C+ +    A +   EM ER   P +  +  L+
Sbjct: 213 DALEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILI 268

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK  K  +A  +L +M D G  PD V +N+++ G  + GK   A  LL  M  + C 
Sbjct: 269 DGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCR 328

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  LI  LC+ + ++ A     E   SG   DVVTY+ L  G CK  +ID  +E+
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 388

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M  +G  PN +TY  ++    K  + E+  EL+  +   G VPDV  Y +++   CK
Sbjct: 389 VKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCK 448

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR-------- 482
            G L +A+ +   M     +P   ++  ++ G    G + EA   FKEMV +        
Sbjct: 449 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALA 508

Query: 483 ----------------------GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
                                 G+   P      AL++   +  +++   +V+  +  +G
Sbjct: 509 YVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 568

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C  N+  + I +  L  +G V EA  +   M  A  +P   ++  ++ GL K    + A 
Sbjct: 569 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 628

Query: 581 EITEKV 586
           ++ +++
Sbjct: 629 QVLDQM 634



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 211/471 (44%), Gaps = 39/471 (8%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           +V     Y  ++  L K  +      ++E M K    P +IT   +  LM        V 
Sbjct: 432 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVIT---YTALMEGLCRTGRVD 488

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251
           +A  +  EM    C  D   +  L++  CK+S  KEA K+ D +R    P +  + +L+ 
Sbjct: 489 EAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--TPYIDVYNALMD 546

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+CKEG+L E   V   M   G  P+I  YN ++ G  + GK+ +AF  L+ M   GC P
Sbjct: 547 GYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVP 606

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  SY ++I  L +  K +EA +   +M ++G   D VTY TL++ FCK  + D    IL
Sbjct: 607 DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGIL 666

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV-SNYNVVIRLACK 430
            +MI+ G+ P+ +TY  ++    +   L +  ELM EM + GCV    + YN +I   CK
Sbjct: 667 KNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCK 726

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM----------- 479
            G LK+A+ + + M    +   T ++ + +     +G L EA     EM           
Sbjct: 727 EGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTT 786

Query: 480 VGRGLLSAPQYG--------------------TLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           V  GL  A Q                      T   L+++  + ++++ A  +   +V +
Sbjct: 787 VIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQR 846

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           GC  +V  + + I  L     V +A     +M    ++    ++  L+ GL
Sbjct: 847 GCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGL 897



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 185/381 (48%), Gaps = 46/381 (12%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           DVY AL+    K  +   +  + E+M  R   P + T   + I+M        V +A   
Sbjct: 539 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKT---YNIVMDGLCKHGKVDEAFPF 595

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L+ M   GC PD   +  ++D L K S  KEA ++ D+M +    P    + +L+  +CK
Sbjct: 596 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 655

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC------ 309
           E +  +A  +L  M  AG +PD V YN L+SG +Q  ++ DA+EL+ EM R GC      
Sbjct: 656 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 715

Query: 310 ------------------------------DPNANSYTVLIQALCRMEKMEEANRAFVEM 339
                                         + N  +Y + I  LC+  +++EA+    EM
Sbjct: 716 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 775

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEE 398
           +      D V+YTT+I G CK+ ++DR  ++   M+  +G+     T+  ++ A  K + 
Sbjct: 776 DTL---RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKR 832

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L+E + L+G M + GC P V  YN+VI   CKL ++ +A  +++EM    +   + S+ V
Sbjct: 833 LDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 892

Query: 459 MVHGFLGQGCLIEACEYFKEM 479
           +++G  GQG   EA +  +EM
Sbjct: 893 LIYGLCGQGRGKEALQVLEEM 913



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 185/406 (45%), Gaps = 37/406 (9%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
           + + M   G  PD + +  ++ +LC+ + + +A  + D+ + R FKP +  +T L   +C
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 255 KEGKLVEAKYV-------------------------------LVQMKDAGFEPDIVVYNN 283
           K G+L +A  +                               L +M +    PD+  YN 
Sbjct: 207 KTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNI 266

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ G  +  K   A E+L EM  +G  P+  ++  ++  LC+  K E A+     M    
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN 326

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C     TY TLISG CK + +DR  +++D  +  G +P+ +TY  +     K+  ++E  
Sbjct: 327 CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAF 386

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           EL+ EM   GC P++  YN +I   CK  + ++A  +   + ++   P   ++ ++V G 
Sbjct: 387 ELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGL 446

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             +G L +A +  + M+ RG    P   T  AL+  L R  +V+ A  ++  +V+K C  
Sbjct: 447 CKEGRLDKALKMVEGMLKRG--CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTA 504

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  A+   ++    +   KEA    +D +     P  D +  LM G
Sbjct: 505 DALAYVSLVNGYCKSSRTKEA-QKVVDGIRG--TPYIDVYNALMDG 547



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 166/362 (45%), Gaps = 7/362 (1%)

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F   C L  L +N S      +F+ M +  + P    +  ++   C+  ++ +A  +L +
Sbjct: 126 FTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDK 185

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
            K  GF+P++ VY  L   + + G++ DA E+ + +      P+A +Y  +I   CR   
Sbjct: 186 AKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP----SPDAIAYNAIIHGHCRKND 241

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
            + A     EM       DV TY  LI G CK+ K D+  E+L  M+ RG+ P+ +T+  
Sbjct: 242 CDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNS 301

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           IM    K  + E    L+  M +  C P    YN +I   CK   +  A ++ +E  ++ 
Sbjct: 302 IMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSG 361

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   ++ ++  G   +G + EA E  KEM G+G    P   T   L++ L +A K E 
Sbjct: 362 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKG--CTPNLVTYNTLIDGLCKASKTEK 419

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A ++   +V+ G   +V  +TI +  L   G + +A      M+     P   T+  LM 
Sbjct: 420 AYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALME 479

Query: 569 GL 570
           GL
Sbjct: 480 GL 481



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 6/325 (1%)

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A    V   D GF+      N  L    + G       + + M   G  P++ +Y ++I+
Sbjct: 109 AIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIK 168

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           +LC+M ++++A     + +  G + +V  YT L   FCK+ ++    EI  ++      P
Sbjct: 169 SLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----P 224

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + + Y  I+  H +K + +  +E + EM +    PDV  YN++I   CK  +  +A  + 
Sbjct: 225 DAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEML 284

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           +EM    ++P T +F  ++ G    G    A      M  R     P   T   L++ L 
Sbjct: 285 HEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN--CRPSCCTYNTLISGLC 342

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           + Q V+ AKD+    V+ G   +V  ++I    L   G + EA     +M      P   
Sbjct: 343 KQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLV 402

Query: 562 TFAKLMRGLKKLYNRQIAAEITEKV 586
           T+  L+ GL K    + A E+ E +
Sbjct: 403 TYNTLIDGLCKASKTEKAYELLESL 427



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 44/247 (17%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI  LS+  + G  + LM EM +    +     +  ++ R      +K+A+ ++D 
Sbjct: 680 TYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDH 739

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH---FTSLLYGWCK- 255
           M  +G E +   +   +D LCK   + EA+ L  EM      +LR    +T+++ G CK 
Sbjct: 740 MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD-----TLRDEVSYTTVIIGLCKA 794

Query: 256 -----------------------------------EGKLVEAKYVLVQMKDAGFEPDIVV 280
                                                +L EA  +L  M   G  P ++ 
Sbjct: 795 EQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVIT 854

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN +++   ++ K+  A+EL  EM  +G   ++ SYTVLI  LC   + +EA +   EM 
Sbjct: 855 YNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMA 914

Query: 341 RSGCEAD 347
            S CE D
Sbjct: 915 SSDCEID 921



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 6/268 (2%)

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           V+ + L R++  + A   FV     G +    T    +    ++   DR   + + M+  
Sbjct: 95  VVSRVLQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDA 154

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+  TY  ++ +  +  ++++   ++ + +  G  P+VS Y ++ R  CK G LK+A
Sbjct: 155 GYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDA 214

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + ++  +     SP   ++  ++HG   +     A E+ KEM  R +  AP   T   L+
Sbjct: 215 LEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKV--APDVFTYNILI 268

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + L +A K + A ++   +V +G   +   +   +  L   G  + A S    M + +  
Sbjct: 269 DGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCR 328

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEK 585
           P   T+  L+ GL K  N   A ++ ++
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDE 356


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 221/438 (50%), Gaps = 24/438 (5%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T   F  LM        V +A+ +LD M + G +P++  +G ++D +CK      
Sbjct: 176 KPNVVT---FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVS 232

Query: 228 AAKLFDEMRE--RFKPS-----LRHFTSLLYGWCKEGKLVEAKYVLVQMKD-AGFEPDIV 279
           A  L  +M E    KP+     L   T ++ G+C  G+  EA+ +L +M +     PD+V
Sbjct: 233 ALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVV 292

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            YN L++ + + GK  +A EL  EM  +G  P+  +Y+ +I   C+  +++ A   F  M
Sbjct: 293 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM 352

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
              GC  D++T+ TLI+G+C+++++D   ++L  M + G++ N +TY  ++    +  +L
Sbjct: 353 ATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 412

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS--------- 450
               +L+ EM   G  P+V   N ++   C  G+LK+A+ ++  M+ + +          
Sbjct: 413 NAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNG 472

Query: 451 --PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   ++ +++ G + +G  +EA E ++EM  RG++  P   T  ++++ L +  +++ 
Sbjct: 473 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV--PDTITYNSVIHGLCKQSRLDE 530

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  ++  + +K    NV  +T  I+     G V +      +M    ++    T+  L+ 
Sbjct: 531 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIH 590

Query: 569 GLKKLYNRQIAAEITEKV 586
           G +K+ N   A +I +++
Sbjct: 591 GFRKVGNINGALDIFQEM 608



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 193/414 (46%), Gaps = 23/414 (5%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F ILM+ F S   +  A+    ++ K G  P    F  LL  LC    + EA  LF +M 
Sbjct: 116 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM- 174

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
              KP++  FT+L+ G C+EG++VEA  +L +M + G +P+ + Y  ++ G  +MG    
Sbjct: 175 --CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVS 232

Query: 297 AFELLKEMRR-KGCDPNANSY-----TVLIQALCRMEKMEEANRAFVEM-ERSGCEADVV 349
           A  LL++M       PN   +     T +I   C   +  EA +   EM ER     DVV
Sbjct: 233 ALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVV 292

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY  LI+ F K  K     E+ D M+ RGI+P+ +TY  ++    K+  L+    +   M
Sbjct: 293 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM 352

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              GC PD+  +N +I   C+   + + + + +EM  A L   T ++  ++HGF   G L
Sbjct: 353 ATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 412

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK----VEMAK-------DVWSCIVT 518
             A +  +EMV  G+   P   T   LL+ L    K    +EM K       D+ +    
Sbjct: 413 NAAQDLLQEMVSSGV--CPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPF 470

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G E +V  + I I  L + G   EA     +M    ++P   T+  ++ GL K
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCK 524



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 160/337 (47%), Gaps = 17/337 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI +  K  KF     L +EM  R   P  IT   +  ++  F     +  A  +  
Sbjct: 294 YNALINAFVKEGKFFEAEELYDEMLPRGIIPSTIT---YSSMIDGFCKQNRLDAAEHMFY 350

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M   GC PD   F  L+   C+   V +  KL  EM E     +   +T+L++G+C+ G
Sbjct: 351 LMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVG 410

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR----------- 306
            L  A+ +L +M  +G  P++V  N LL G    GK+ DA E+ K M++           
Sbjct: 411 DLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPF 470

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G +P+  +Y +LI  L    K  EA   + EM   G   D +TY ++I G CK  ++D 
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDE 530

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++ DSM  +   PN +T+  ++  + K   +++ +EL  EM + G V +   Y  +I 
Sbjct: 531 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIH 590

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
              K+G +  A++++ EM A+ + P T +   M+ G 
Sbjct: 591 GFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 172/361 (47%), Gaps = 17/361 (4%)

Query: 161 MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           M E +K  P ++T   +  L+  F       +A E+ DEM   G  P    +  ++D  C
Sbjct: 281 MLERKKISPDVVT---YNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFC 337

Query: 221 KNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           K + +  A  +F  M  +   P +  F +L+ G+C+  ++ +   +L +M +AG   + +
Sbjct: 338 KQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTI 397

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  L+ G+ Q+G +  A +LL+EM   G  PN  +   L+  LC   K+++A   F  M
Sbjct: 398 TYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAM 457

Query: 340 ERS-----------GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           ++S           G E DV TY  LISG     K     E+ + M  RGI+P+ +TY  
Sbjct: 458 QKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNS 517

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    K+  L+E  ++   M      P+V  +  +I   CK G + + + ++ EM    
Sbjct: 518 VIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 577

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           +     +++ ++HGF   G +  A + F+EM+  G+   P   T++ +L  L   ++++ 
Sbjct: 578 IVANAITYITLIHGFRKVGNINGALDIFQEMMASGVY--PDTITIRNMLTGLWSKEELKR 635

Query: 509 A 509
           A
Sbjct: 636 A 636



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 158/328 (48%), Gaps = 19/328 (5%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKK 192
           + S   Y ++I    K  +  A   +   M  +   P +IT   F  L+  +  A+ V  
Sbjct: 323 IPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIIT---FNTLIAGYCRAKRVDD 379

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
            I++L EM + G   +   +  L+   C+   +  A  L  EM      P++    +LL 
Sbjct: 380 GIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLD 439

Query: 252 GWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           G C  GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A EL
Sbjct: 440 GLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEEL 499

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            +EM  +G  P+  +Y  +I  LC+  +++EA + F  M       +VVT+TTLI+G+CK
Sbjct: 500 YEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCK 559

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-VS 419
           + ++D   E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD ++
Sbjct: 560 AGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTIT 619

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAA 447
             N++  L  K  ELK AV +  +++ +
Sbjct: 620 IRNMLTGLWSK-EELKRAVAMLEDLQMS 646



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 155/355 (43%), Gaps = 52/355 (14%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLK--EMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           P ++ +  L+    +MG++     L +  EMRR  C  NA S+T+L++  C   K+  A 
Sbjct: 76  PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPC--NAYSFTILMKCFCSCSKLPFAL 133

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F ++ + G    VVT++TL+ G C   +I    ++   M +    PN +T+  +M   
Sbjct: 134 STFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCK----PNVVTFTTLMNGL 189

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS----- 448
            ++  + E V L+  M + G  P+   Y  ++   CK+G+   A+N+  +ME  S     
Sbjct: 190 CREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPN 249

Query: 449 -------------------------------------LSPGTDSFVVMVHGFLGQGCLIE 471
                                                +SP   ++  +++ F+ +G   E
Sbjct: 250 VVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFE 309

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A E + EM+ RG++  P   T  ++++   +  +++ A+ ++  + TKGC  ++  +   
Sbjct: 310 AEELYDEMLPRGII--PSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTL 367

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           I        V +      +M +A ++    T+  L+ G  ++ +   A ++ +++
Sbjct: 368 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM 422


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 243/501 (48%), Gaps = 13/501 (2%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L P    +V+N   DA N   R++ WA KQ  Y H+ D Y  +I  L + + F  + +L+
Sbjct: 181 LNPDAVVKVLNLQTDAQN-ALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLL 239

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD--EFVFGCLLDAL 219
           ++M+ +  ++  + +   +M    S R  K+++E  + M + G EP   +  +  +L +L
Sbjct: 240 QKMQTQGREITRSMLHSFVMSYGRSGRF-KESLEAFNLMKEMGYEPGLIDTAYNSVLVSL 298

Query: 220 CKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
            KN  +  A  LF +M       +   +TS++  +  + K+ +A  +L  M    + PD+
Sbjct: 299 VKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDV 358

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V Y  ++S   +   +  A+ +L++MR  GC+PN  +Y  LIQ LC + + EEA      
Sbjct: 359 VTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTL 418

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME+ G   ++ TYT L  G CK R++DR  E+ +  + RG+ PN++TY  ++  + +   
Sbjct: 419 MEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSR 478

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L E ++++ EM +  C PD   Y  +I+   +  +L +A+ + +EME        D+  +
Sbjct: 479 LIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNI 538

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +  G    G   +A  +++ M  RG   SA  Y      ++ L  A ++E A+ +   ++
Sbjct: 539 LARGLARVGNHKDASIFYRRMKDRGFAYSASDY---YLAIHCLSTAGEMEEAQALLYEMI 595

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
            KG   N+  +   I      G + +A +    M++  + P   ++  L+    K ++ Q
Sbjct: 596 NKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILI----KEFHNQ 651

Query: 578 IAAEITEKVRKMAAERQITFK 598
              +  +++   A ER +   
Sbjct: 652 GRTQDADQLYATALERGVVLN 672



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 170/353 (48%), Gaps = 6/353 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ++I+      K      L+++M +    P ++T   + I++      +M+++A  VL
Sbjct: 325 TYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVT---YTIVISALCKRKMIEQAYGVL 381

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M + GCEP+ + +  L+  LC     +EA +L   M +    P++  +T L +G CK 
Sbjct: 382 QKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKL 441

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +L  AK +  +    G +P+ V YN LL+GY +  ++ +A ++LKEM +  C P+  +Y
Sbjct: 442 RRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTY 501

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LIQ L +  ++ +A R   EME  G + +  T   L  G  +             M  
Sbjct: 502 TTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKD 561

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RG   +   Y   +       E+EE   L+ EM   G  P+++ YN +I+  C+ G L +
Sbjct: 562 RGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDD 621

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           A  + N M    + P T S+ +++  F  QG   +A + +   + RG++  P+
Sbjct: 622 ADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVVLNPK 674


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 226/448 (50%), Gaps = 5/448 (1%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           Y     +P    S   +  LI + +++ + G  ++L+  + K   Q I   +   LM+  
Sbjct: 92  YTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQ-IDVRILTTLMKGL 150

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSL 243
                V +A+ +L E    G   DE  +G +++ LCK    ++A ++F +M++ R  P+L
Sbjct: 151 CLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNL 210

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             + +++ G CK+G + EA  +  +M + G E D+  YN+++ G+  +G+   A +LL E
Sbjct: 211 IMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDE 270

Query: 304 MRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           M  +G   P+  ++ +LI  LC++ ++ EA      M + G + D+V+Y  L++G+C S 
Sbjct: 271 MVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSG 330

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +    ++ D M++R  LPN ++Y  ++  + K   ++E + L+ EM     VPD   YN
Sbjct: 331 SVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYN 390

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++    K G      ++   M A+       ++ V++  +       +A   F+ ++  
Sbjct: 391 CLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEI 450

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+  +P   T   LL+ L ++ +++ AK+++  +  KGC+ N+  + I IH L   G + 
Sbjct: 451 GI--SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLD 508

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
           EA +    M++ + +P   TF  ++R +
Sbjct: 509 EAEALLYKMVNNNYLPNYITFDTIVRAI 536



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 178/365 (48%), Gaps = 9/365 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K+ K      +  +M+K +  P LI   ++  ++       +V +A  +  
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLI---MYNTVIDGLCKQGLVDEACGLCT 234

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKE 256
           EM + G E D + +  ++   C     + A KL DEM  R +  P +  F  L+ G CK 
Sbjct: 235 EMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKL 294

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ EA  V+  M   G++PDIV YN L++GY   G + +A ++  +M  +   PN  SY
Sbjct: 295 GRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISY 354

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI   C++  ++EA     EM       D VTY  L+ G  KS +    ++++++M  
Sbjct: 355 CTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRA 414

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G   + +TY  ++  + K E+ ++ + L   + +IG  P++  YN+++   CK G LK 
Sbjct: 415 SGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKY 474

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++  + A    P   ++ +M+HG   +G L EA     +MV    L  P Y T   +
Sbjct: 475 AKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYL--PNYITFDTI 532

Query: 497 LNSLL 501
           + ++L
Sbjct: 533 VRAIL 537



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 206/459 (44%), Gaps = 43/459 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +  L+ +L K++++ AV +L   ++ +   KP LIT   F IL+  FA    +  A  +L
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLIT---FSILINAFAQLGQMGFAFSLL 128

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
             + K G                                  F+  +R  T+L+ G C +G
Sbjct: 129 GNILKMG----------------------------------FQIDVRILTTLMKGLCLKG 154

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +++EA  +L +  D GF  D V Y  +++G  ++GK  DA ++  +M++    PN   Y 
Sbjct: 155 RVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYN 214

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+   ++EA     EM  +G E DV +Y ++I GFC   +     ++LD M+ R
Sbjct: 215 TVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVR 274

Query: 378 G-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           G + P+  T+  ++    K   + E   ++  M K G  PD+ +YN ++   C  G + E
Sbjct: 275 GKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGE 334

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  V+++M   +  P   S+  +++G+     + EA     EM  + L+  P   T   L
Sbjct: 335 AKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLV--PDTVTYNCL 392

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L+ L ++ +     D+   +   G   ++  + + +   F +    +A +    +++  +
Sbjct: 393 LDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGI 452

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            P   T+  L+ GL K    + A EI + +     +  I
Sbjct: 453 SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNI 491


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 213/440 (48%), Gaps = 39/440 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ S++KM+    + +L  +M      P + T     IL+  F     V  A  VL 
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLH---ILINSFCHLNRVGFAFSVLA 120

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  +     + EA  LFD+M  E F+P +  + +L+ G CK G
Sbjct: 121 KILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVG 180

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M     +P++  YN ++    +  ++T+AF L  EM  KG  P+  +Y 
Sbjct: 181 NTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYN 240

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI ALC + + +       EM  S    DVV++ T++   CK  K+   ++++D MIQR
Sbjct: 241 SLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  +M  H    E++E V++   M   GC+P+V +YN +I   CK+  + +A
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKA 360

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG----------RGLLS- 486
           + ++ EM    L P T ++  ++HG      L +A   F EMV           R LL  
Sbjct: 361 MYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDY 420

Query: 487 -------APQYGTLKAL---------------LNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                  A     LKA+               ++ + RA ++E A+D++S + +KG + +
Sbjct: 421 LCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 480

Query: 525 VYAWTIWIHSLFSNGHVKEA 544
           V+ ++I I+ L   G + EA
Sbjct: 481 VWTYSIMINGLCRRGLLDEA 500



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 192/403 (47%), Gaps = 10/403 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+    A   L+  M ++  Q     VF    ++      R V +A  +  
Sbjct: 169 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQ---PNVFAYNTIIDSLCKDRQVTEAFNLFS 225

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD F +  L+ ALC     K  A L +EM + +  P +  F +++   CKEG
Sbjct: 226 EMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEG 285

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  V+ +M   G EP++V Y  L+ G+  + +M +A ++   M  KGC PN  SY 
Sbjct: 286 KVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYN 345

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+++++++A   F EM R     D VTY+TLI G C   ++     +   M+  
Sbjct: 346 TLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVAC 405

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
             +PN +TY  ++    K   L E + L+  +      PD+   N+ I   C+ GEL+ A
Sbjct: 406 SQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAA 465

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKAL 496
            ++++ + +  L P   ++ +M++G   +G L EA + F+EM   G  L+   Y T+   
Sbjct: 466 RDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT-- 523

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
               LR  +   A  +   +V +G   +    T+++  L  +G
Sbjct: 524 -RGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDG 565



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 18/306 (5%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  V +N LL+  A+M   +    L  +M   G  PN  +  +LI + C + ++  A   
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G     KI     + D MI  G  P+ +TY  ++    K
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+G M +  C P+V  YN +I   CK  ++ EA N+++EM    +SP   +
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 456 FVVMVHGFLGQGCLIEACEY------FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  ++H       L   CE+        EMV   ++  P   +   ++++L +  KV  A
Sbjct: 239 YNSLIHA------LCNLCEWKHVATLLNEMVDSKIM--PDVVSFNTVVDALCKEGKVTEA 290

Query: 510 KDVWSCIVTKGCELNVYAWTIWI--HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            DV   ++ +G E NV  +T  +  H L S   + EA      M+    MP   ++  L+
Sbjct: 291 HDVVDKMIQRGVEPNVVTYTALMDGHCLLS--EMDEAVKVFDTMVCKGCMPNVISYNTLI 348

Query: 568 RGLKKL 573
            G  K+
Sbjct: 349 NGYCKI 354



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 120/269 (44%), Gaps = 4/269 (1%)

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           ++ A  +F  M R       V +  L++   K +       +   M   GI PN  T LH
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYT-LH 100

Query: 389 IML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
           I++ +      +     ++ ++ K+G  PD + +  +IR     G++ EA++++++M   
Sbjct: 101 ILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGE 160

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   ++  +++G    G    A      MV +     P       +++SL + ++V 
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN--CQPNVFAYNTIIDSLCKDRQVT 218

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A +++S +VTKG   +++ +   IH+L +    K   +   +M+D+ +MP   +F  ++
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 278

Query: 568 RGLKKLYNRQIAAEITEKVRKMAAERQIT 596
             L K      A ++ +K+ +   E  + 
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVV 307


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 218/436 (50%), Gaps = 9/436 (2%)

Query: 141 YRALIKSLSKMRKF-GAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +  L+ ++ KM ++   V +L ++M      P + T     IL+  F+  + V  A  VL
Sbjct: 100 FTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLS---ILINCFSHLQRVDLAFSVL 156

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            ++ K G +P    F  L++ LCK     +A +LFD+M  R  +P +  +T+++ G CK 
Sbjct: 157 AKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKI 216

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+   A  +L +M++AG +P++V Y+ ++  + +  ++ +A ++   M+ KG  P+  +Y
Sbjct: 217 GETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTY 276

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LIQ LC   + +EA+    EM       D+VT+  L+   CK  K+     +L +M +
Sbjct: 277 NSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTE 336

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ P+ +TY  +M  +  + E+ E  +L   M   GC PDV +YN++I   CK+  + E
Sbjct: 337 MGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDE 396

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++NEM    L+P   S+  ++HG    G L EA   FK M   G L  P   T   L
Sbjct: 397 AKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL--PNLFTYSIL 454

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L+   +      A  ++  + +   + N+  + I I ++  +G++++A     ++    +
Sbjct: 455 LDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGL 514

Query: 557 MPQPDTFAKLMRGLKK 572
            P    +  ++ GL K
Sbjct: 515 QPNAQIYTTIINGLCK 530



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 176/342 (51%), Gaps = 6/342 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K+ +  A   L+++M +   +P ++T    +   R+    R V +A+++  
Sbjct: 206 YTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRK---DRRVNEALDIFS 262

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M   G  PD F +  L+  LC  S  KEA+ L +EMR     P +  F  L+   CKEG
Sbjct: 263 YMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEG 322

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA+ VL  M + G EPD+V Y++L+ GY+   ++ +A +L   M  KGC P+  SY 
Sbjct: 323 KVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYN 382

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C++++++EA + F EM   G   + V+Y TLI G C+   +     +  +M   
Sbjct: 383 ILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTN 442

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LPN  TY  ++    K+    +   L   M+     P++  YN++I   CK G L++A
Sbjct: 443 GNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDA 502

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             +++E+    L P    +  +++G   +G L EA E F+ M
Sbjct: 503 RKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNM 544



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 181/360 (50%), Gaps = 6/360 (1%)

Query: 217 DALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLV-QMKDAGF 274
           D  C   ++ +A   F+ M  R   P +  FT LL    K G+  +    L  QM+ AG 
Sbjct: 70  DDACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGL 129

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            P+I   + L++ ++ + ++  AF +L ++ + G  P   ++T LI  LC++ K  +A  
Sbjct: 130 SPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAME 189

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F +M   GC  DV TYTT+I+G CK  +      +L  M + G  PN +TY  I+ +H 
Sbjct: 190 LFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHR 249

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K   + E +++   M+  G  PD+  YN +I+  C   + KEA  + NEM + ++ P   
Sbjct: 250 KDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIV 309

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVW 513
           +F V+V     +G + EA    K M   G+   P   T  +L+    LR++ VE A+ ++
Sbjct: 310 TFNVLVDTICKEGKVSEAQGVLKTMTEMGV--EPDVVTYSSLMYGYSLRSEVVE-ARKLF 366

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             ++TKGC+ +V+++ I I+       + EA     +M+   + P   ++  L+ GL +L
Sbjct: 367 DAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQL 426



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           P+ V +++V    I    K+ +   V   M EM  E P ++T   +  LM  ++    V 
Sbjct: 306 PDIV-TFNVLVDTICKEGKVSEAQGVLKTMTEMGVE-PDVVT---YSSLMYGYSLRSEVV 360

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           +A ++ D M   GC+PD F +  L++  CK   + EA +LF+EM  +   P+   + +L+
Sbjct: 361 EARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLI 420

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G C+ G L EA+ +   M   G  P++  Y+ LL G+ + G    AF L + M+     
Sbjct: 421 HGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSK 480

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN   Y +LI A+C+   + +A + F E+   G + +   YTT+I+G CK   +D   E 
Sbjct: 481 PNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEA 540

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
             +M + G  P++++Y  I+      ++    V+L+GEMR  G + DV
Sbjct: 541 FRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADV 588



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 6/213 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    K+++      L  EM  +   P  ++    +  + +  S R   +A  +  
Sbjct: 381 YNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLR---EARNLFK 437

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
            M   G  P+ F +  LLD  CK     +A +LF  M+  + KP+L  +  L+   CK G
Sbjct: 438 NMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSG 497

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A+ +  ++   G +P+  +Y  +++G  + G + +A E  + M   GC P+  SY 
Sbjct: 498 NLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYN 557

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           V+I+     +    A +   EM   G  ADV T
Sbjct: 558 VIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 126/305 (41%), Gaps = 38/305 (12%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEADVVTY 351
            + DA      M  +   P    +T L+ A+ +M +  +   +   +ME +G   ++ T 
Sbjct: 77  NIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTL 136

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           + LI+ F   +++D  + +L  +I+ G+ P  +T+  ++    K  +  + +EL  +M  
Sbjct: 137 SILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVA 196

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            GC PDV  Y  +I   CK+GE   A  +  +ME A                   GC   
Sbjct: 197 RGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEA-------------------GC--- 234

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
                           P   T   +++S  + ++V  A D++S +  KG   +++ +   
Sbjct: 235 ---------------QPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSL 279

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L +    KEA +   +M   ++MP   TF  L+  + K      A  + + + +M  
Sbjct: 280 IQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGV 339

Query: 592 ERQIT 596
           E  + 
Sbjct: 340 EPDVV 344



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 3/170 (1%)

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC-EYFKEMVGRGLLS 486
           AC    + +A+  +N M      P    F  ++   +  G   +      K+M   GL  
Sbjct: 72  ACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGL-- 129

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +P   TL  L+N     Q+V++A  V + I+  G +  +  +T  I+ L   G   +A  
Sbjct: 130 SPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAME 189

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
              DM+     P   T+  ++ GL K+     AA + +K+ +   +  + 
Sbjct: 190 LFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVV 239


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 194/367 (52%), Gaps = 3/367 (0%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
           G  PD   +  +++  C    +++  KL  EM+ +  KP+L  + S++   CK GK+ +A
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           + VL +M + G  PD VVY  L+ G+ ++G +  A++L  EM ++   P+  +YT +I  
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LCR  KM EA++ F +M   G E D VTYTTLI G+CKS ++++ + + + M+Q G+ PN
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  +     K  +++   EL+ EM   G   ++  YN ++   CK G +++AV +  
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLME 244

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EME A + P T +F  ++  +   G +++A E  +EM+ RGL   P   T   L+N    
Sbjct: 245 EMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGL--QPTVITFNVLMNGFCM 302

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +  +E  + + + ++ KG   N   +   +       +++        M    VMP  +T
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNT 362

Query: 563 FAKLMRG 569
           +  L++G
Sbjct: 363 YNILIKG 369



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 191/376 (50%), Gaps = 11/376 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I       +   V  L++EM+ +  KP L T    ++L+ +      V  A  VL 
Sbjct: 13  YSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK---VDDAERVLR 69

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD  V+  L+D  CK  +++ A KLFDEM ++R  P    +T+++ G C+ G
Sbjct: 70  EMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCG 129

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K++EA  V  +M   G EPD V Y  L+ GY + G+M  AF L  +M + G  PN  +YT
Sbjct: 130 KMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYT 189

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L   LC++ +++ AN    EM   G + ++ TY +L++G CKS  I +  ++++ M   
Sbjct: 190 ALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVA 249

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +T+  +M A+ K  E+ +  EL+ EM   G  P V  +NV++   C  G L++ 
Sbjct: 250 GMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDG 309

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M    + P T ++  ++  +  +  +    E +K M  RG++  P   T   L+
Sbjct: 310 ERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVM--PDSNTYNILI 367

Query: 498 NSLLRAQKVEMAKDVW 513
               +A+ +   K+ W
Sbjct: 368 KGHCKARNM---KEAW 380



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 180/348 (51%), Gaps = 6/348 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY  LI    K+    A + L +EM K++  P  I     +  + R      + +A +V 
Sbjct: 82  VYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGK---MMEADKVF 138

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           ++M   G EPDE  +  L+D  CK+  +++A  L ++M +    P++  +T+L  G CK 
Sbjct: 139 NKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKL 198

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++  A  +L +M   G + +I  YN+L++G  + G +  A +L++EM   G  P+  ++
Sbjct: 199 GQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITF 258

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T L+ A C+  +M +A+    EM   G +  V+T+  L++GFC S  ++    +L  M++
Sbjct: 259 TTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLE 318

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI+PN  TY  +M  +  +  +    E+   M   G +PD + YN++I+  CK   +KE
Sbjct: 319 KGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKE 378

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           A  +  EM     +    S+  ++ GF  +  + EA E F+EM   G+
Sbjct: 379 AWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGM 426



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 149/302 (49%), Gaps = 2/302 (0%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           MK  G  PD+V Y+ +++GY   G++    +L++EM+ KG  PN  +Y  +I  LC+  K
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +++A R   EM   G   D V YTTLI GFCK   I   Y++ D M ++ I+P+ + Y  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    +  ++ E  ++  +M   G  PD   Y  +I   CK GE+++A ++ N+M  + 
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L+P   ++  +  G    G +  A E   EM G+GL       T  +L+N L ++  +  
Sbjct: 181 LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGL--QLNICTYNSLVNGLCKSGNIRQ 238

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  +   +   G   +   +T  + +    G + +A     +M+D  + P   TF  LM 
Sbjct: 239 AVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMN 298

Query: 569 GL 570
           G 
Sbjct: 299 GF 300



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 41/285 (14%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y AL   L K+ +      L+ EM  +  QL     +  L+     +  ++
Sbjct: 183 PNVV----TYTALADGLCKLGQVDTANELLHEMCGKGLQL-NICTYNSLVNGLCKSGNIR 237

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+++++EM   G  PD   F  L+DA CK   + +A +L  EM +R  +P++  F  L+
Sbjct: 238 QAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM 297

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  G L + + +L  M + G  P+   YN+L+  Y     M    E+ K M  +G  
Sbjct: 298 NGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVM 357

Query: 311 PNANSYTVLIQALCRMEKMEEA-----------------------------------NRA 335
           P++N+Y +LI+  C+   M+EA                                      
Sbjct: 358 PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEAREL 417

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
           F EM R G  AD   Y   +        ++   E+ D  I+   L
Sbjct: 418 FEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIENCFL 462


>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 143/553 (25%), Positives = 224/553 (40%), Gaps = 108/553 (19%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           Y+ WAS  PN+VHS   YRALI  L   R+F  V  L++EM          ++F+ ++R 
Sbjct: 55  YFRWASTVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLDEMPHSLGAPPGDDIFITIIRG 114

Query: 184 FASARMVKKAIEVLDEMPKY-----------------------------------GCEPD 208
              ARM +  I+VLD + K+                                   G E D
Sbjct: 115 LGRARMTRTVIKVLDLVYKFHGSPSLKIFNSILDVLVKEDIDMAREFYRKSMMASGVEGD 174

Query: 209 EFVFGCLLDALCKNSSVKEAAKLF--------------------------------DEMR 236
           ++ FG L+  LC  + + E  KL                                 + M 
Sbjct: 175 DYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRNGKVGRARNLMN 234

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD------------------- 277
           E   P+   F  L+ G+CKEG  V+A  +L +    GF PD                   
Sbjct: 235 EMEDPNDVTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTME 294

Query: 278 ----------------IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
                           +V YN L+ G+   GK+      LK+M  KGC PN ++Y VLI 
Sbjct: 295 AAEVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLIS 354

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM--IQRGI 379
                  ++ A   F +M+  G + + VT+ TLI G C   +I+  + IL+ M   + G 
Sbjct: 355 GFSESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGS 414

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             +   Y  I+    KK   +E  E + +M  +   P   + +++I   CK G +++A  
Sbjct: 415 RGHISPYNSIIYGLLKKNGFDESAEFLTKMGNL--FPRAVDRSLMILEHCKKGAIEDAKR 472

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V+++M      P    +  +VHGF  QG + EA E   EM+       P   T  A++  
Sbjct: 473 VYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIPS--TFNAVITG 530

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             R  KVE A  +   I  +GC  N   ++  I  L  NG +++A    + M+D  ++P 
Sbjct: 531 FCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGILPD 590

Query: 560 PDTFAKLMRGLKK 572
              +  L+  L +
Sbjct: 591 LFIWNSLLLSLSQ 603



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 123/306 (40%), Gaps = 72/306 (23%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK      K       +++M + K  L   + + +L+  F+ + M+  A+++ ++M
Sbjct: 314 YNTLIKGFCGAGKVKVGLHFLKQM-ENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDM 372

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH---FTSLLYGW---- 253
              G + +   F  L+  LC    +++   + + M E  + S  H   + S++YG     
Sbjct: 373 KTDGIKWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKN 432

Query: 254 -----------------------------CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
                                        CK+G + +AK V  QM D G  P I+VYN L
Sbjct: 433 GFDESAEFLTKMGNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCL 492

Query: 285 LSGYAQMGKMTDAFELLKEM-----------------------------------RRKGC 309
           + G+++ G + +A EL+ EM                                     +GC
Sbjct: 493 VHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFCRQGKVESALKLVEDITARGC 552

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y+ LI  LCR   +++A + F++M   G   D+  + +L+    + R   +   
Sbjct: 553 VPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGILPDLFIWNSLLLSLSQERHFSKNML 612

Query: 370 ILDSMI 375
            +D ++
Sbjct: 613 NIDYIV 618


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 214/436 (49%), Gaps = 9/436 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    KM +      +++ MR +   P  +T   + I++    S   +  A++VL+
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVT---YNIMIGSLCSRGKLDLALKVLN 217

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++    C+P    +  L++A      V EA KL DEM  R  KP +  + +++ G CKEG
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  ++  ++  G EPD++ YN LL      GK  +  +L+ +M  + CDPN  +Y+
Sbjct: 278 MVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYS 337

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LCR  K+EEA      M+  G   D  +Y  LI+ FC+  ++D   E L++MI  
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LP+ + Y  ++    K  + ++ +E+ G++ ++GC P+ S+YN +       G+   A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +++  EM +  + P   ++  M+     +G + EA E   +M  R     P   T   +L
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDM--RSCEFHPSVVTYNIVL 515

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               +A ++E A +V   +V  GC  N   +T+ I  +   G+  EA     D++  D +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575

Query: 558 PQPDTFAKLMRGLKKL 573
            +  +F +L R    L
Sbjct: 576 SEY-SFKRLHRTFPLL 590



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 201/397 (50%), Gaps = 3/397 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T++  I  R   S   ++ ++ +L+ M + G  PD  +   L+       ++ +A ++ +
Sbjct: 90  TQMLKIFHRSCRSGNYIE-SLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 234 EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
            + +  +P +  + +L+ G+CK  ++ +A  VL +M+   F PD V YN ++      GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +  A ++L ++    C P   +YT+LI+A      ++EA +   EM   G + D+ TY T
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I G CK   +DR +E++ ++  +G  P+ ++Y  ++ A   + + EE  +LM +M    
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C P+V  Y+++I   C+ G+++EA+N+   M+   L+P   S+  ++  F  +G L  A 
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 388

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E+ + M+  G L  P       +L +L +  K + A +++  +   GC  N  ++     
Sbjct: 389 EFLETMISDGCL--PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 446

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +L+S+G    A    L+MM   + P   T+  ++  L
Sbjct: 447 ALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 87/214 (40%), Gaps = 38/214 (17%)

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+S        +L++M+++G  P+ +    ++        + + V +M  + K G  PDV
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   CK+  + +A  V + M +   SP T ++ +M+     +G           
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG----------- 207

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
                                     K+++A  V + +++  C+  V  +TI I +    
Sbjct: 208 --------------------------KLDLALKVLNQLLSDNCQPTVITYTILIEATMLE 241

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G V EA     +M+   + P   T+  ++RG+ K
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 210/425 (49%), Gaps = 7/425 (1%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPK-LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYM 126
           N F+     +  I+K      P+ +E  L   G+ L   L   V+NR        Y    
Sbjct: 66  NGFNQSAVDVHNIIKHHRGSSPEEIERILDKCGIQLTEELVFEVVNRNRSDWKPAYILSR 125

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
              K   Y+ S  VY  ++  L KMR+F     +++EM K +   +  + + +L+ R+A+
Sbjct: 126 LIVKHSVYISSSLVYNEILDVLGKMRRFEEFHQVVDEMSK-RDGFVDEKTYEVLLNRYAA 184

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF 246
           A  V +A+ V +   ++G E D   F  LL  LC+   V+ A  LF   R  F   +R  
Sbjct: 185 AHKVDEAVGVFERRREFGIEDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIRTM 244

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             +L GWC  G + EAK +   +  +  +PD+V Y  +++   + GK+  A EL + +  
Sbjct: 245 NIILNGWCVLGNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKAMELYRALWE 304

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G +P+      +I ALC  +++ EA   F EM   G   +VVTY +L+   CK R+ ++
Sbjct: 305 TGRNPDVKICNNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRTEK 364

Query: 367 CYEILDSMIQRG--ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
            +E+++ M  +G    PN +T+ +++   ++ ++++  +E M + +   C      YN++
Sbjct: 365 VWELVEEMEHKGGSCSPNDVTFGYLLKYSQRSKDVDAVLERMAKNK---CEMTSDLYNLM 421

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            RL  +    ++   +W EME + L P   ++ + +HG   +G + EA  YF+EM+ +G+
Sbjct: 422 FRLYVQWDNEEKVREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGM 481

Query: 485 LSAPQ 489
           +  P+
Sbjct: 482 VPEPR 486



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 169/363 (46%), Gaps = 23/363 (6%)

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
            V+  +LD L K    +E  ++ DEM  R+ F    + +  LL  +    K+ EA  V  
Sbjct: 138 LVYNEILDVLGKMRRFEEFHQVVDEMSKRDGFVDE-KTYEVLLNRYAAAHKVDEAVGVFE 196

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRM 326
           + ++ G E D+V ++ LL    +   +  A  L    RR+ GCD    +  +++   C +
Sbjct: 197 RRREFGIEDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD--IRTMNIILNGWCVL 254

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
             + EA R + ++  S C+ DVV+Y T+I+   K  K+ +  E+  ++ + G  P+    
Sbjct: 255 GNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKAMELYRALWETGRNPDVKIC 314

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME- 445
            +++ A   K+ + E +E+  EM + G  P+V  YN +++  CK+   ++   +  EME 
Sbjct: 315 NNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRTEKVWELVEEMEH 374

Query: 446 -AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL--- 501
              S SP   +F          G L++  +  K++       A     + + L +L+   
Sbjct: 375 KGGSCSPNDVTF----------GYLLKYSQRSKDVDAVLERMAKNKCEMTSDLYNLMFRL 424

Query: 502 --RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +    E  +++W  +   G   +   +TI IH L + G + EA SY  +MM   ++P+
Sbjct: 425 YVQWDNEEKVREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPE 484

Query: 560 PDT 562
           P T
Sbjct: 485 PRT 487



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 15/233 (6%)

Query: 141 YRALIKSLSKMRKFGAVW----ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           Y  +I +L+K  K G       AL E  R    ++    +  +  ++      + +A+EV
Sbjct: 279 YGTMINALTKKGKLGKAMELYRALWETGRNPDVKICNNVIDALCFKK-----RIPEALEV 333

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF---KPSLRHFTSLLYGW 253
             EM + G  P+   +  LL  LCK    ++  +L +EM  +     P+   F  LL  +
Sbjct: 334 FKEMSEKGPSPNVVTYNSLLKHLCKIRRTEKVWELVEEMEHKGGSCSPNDVTFGYLL-KY 392

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            +  K V+A  VL +M     E    +YN +   Y Q        E+  EM R G  P+ 
Sbjct: 393 SQRSKDVDA--VLERMAKNKCEMTSDLYNLMFRLYVQWDNEEKVREIWGEMERSGLGPDQ 450

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            +YT+ I  L    K+ EA   F EM   G   +  T   L     K R  D+
Sbjct: 451 RTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQNKTKPRVEDK 503



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 34/229 (14%)

Query: 110 VINRCGDAGNLG-----YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +IN     G LG     YR      + P+      +   +I +L   ++      + +EM
Sbjct: 282 MINALTKKGKLGKAMELYRALWETGRNPDV----KICNNVIDALCFKKRIPEALEVFKEM 337

Query: 165 RKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALC 220
            ++   P ++T   +  L++     R  +K  E+++EM   G  C P++  FG LL    
Sbjct: 338 SEKGPSPNVVT---YNSLLKHLCKIRRTEKVWELVEEMEHKGGSCSPNDVTFGYLL---- 390

Query: 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG--------WCKEGKLVEAKYVLVQMKDA 272
                 + +K  D + ER   +    TS LY         W  E K+ E   +  +M+ +
Sbjct: 391 ---KYSQRSKDVDAVLERMAKNKCEMTSDLYNLMFRLYVQWDNEEKVRE---IWGEMERS 444

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           G  PD   Y   + G    GK+ +A    +EM  KG  P   +  +L Q
Sbjct: 445 GLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQ 493



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 5/166 (3%)

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           + + L Y  I+    K    EE  +++ EM K     D   Y V++       ++ EAV 
Sbjct: 134 ISSSLVYNEILDVLGKMRRFEEFHQVVDEMSKRDGFVDEKTYEVLLNRYAAAHKVDEAVG 193

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV-GRGLLSAPQYGTLKALLN 498
           V+          G +  +V  HG L   C  +  E+ + +   R         T+  +LN
Sbjct: 194 VFERRREF----GIEDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIRTMNIILN 249

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                  V  AK +W  I+   C+ +V ++   I++L   G + +A
Sbjct: 250 GWCVLGNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKA 295


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 218/466 (46%), Gaps = 39/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  ++ S++ M+ +  V +L ++M       I ++V+   I++  F     V     VL 
Sbjct: 77  FAKILTSIANMKHYSTVLSLSKQMDSLG---IPSDVYTLAIVINSFCHLNRVDFGFSVLA 133

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD   F  L+  LC    + EA  LFD+M  E F+P+   + +L++G CK G
Sbjct: 134 KIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVG 193

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L  M     EP+++ YN ++    +  ++ +A  +  EM  KG  PN ++Y 
Sbjct: 194 NSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYN 253

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+  + +       EM  S    +VV +TTL+   CK   +   ++++D MIQR
Sbjct: 254 SIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQR 313

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  +M  H  + E++E  ++   M + GC P+V +Y+ +I   CK+  + +A
Sbjct: 314 GVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKA 373

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS----------- 486
           + ++ EM    L P   ++  ++HG    G L +A   F EMV  G +            
Sbjct: 374 MYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDY 433

Query: 487 ----------------------APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                                 AP   +   +++ + R  ++E A D++S + +KG   +
Sbjct: 434 LCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPD 493

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V+ +TI I+ L   G + EA     +M      P   T+  + RG 
Sbjct: 494 VWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGF 539



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 204/412 (49%), Gaps = 12/412 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y  LI  L K+    A   L+  M ++  +P +IT    +  + +    R
Sbjct: 176 QPNGV----TYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFK---DR 228

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247
            V +A+ +  EM   G  P+   +  ++  LCK S  K  A L +EM + +  P++  FT
Sbjct: 229 QVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFT 288

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+   CKEG +  A  V+  M   G EPD+V Y  L+ G+    +M +A ++   M RK
Sbjct: 289 TLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRK 348

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC PN  SY+ LI   C+++++++A   F EM +     ++VTY TLI G C   ++   
Sbjct: 349 GCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDA 408

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+  G +P+ +TY  ++    K   L++ + ++  +      PD+ +YN+VI  
Sbjct: 409 IALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDG 468

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++GEL+ A ++++ + +  L P   ++ +M++G   QG L EA + F+EM   G   +
Sbjct: 469 MCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG--CS 526

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           P   T   +    LR  +   A  +   ++ +G   +    T+ +  L  +G
Sbjct: 527 PDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDG 578



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 2/298 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P +V +  +L+  A M   +    L K+M   G   +  +  ++I + C + +++     
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTLI G C   KI     + D M+  G  PN +TY  ++    K
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                  + L+  M +  C P+V  YN +I    K  ++ EA+N+++EM A  +SP   +
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++HG               EMV   ++  P       L+++L +   V +A DV   
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIM--PNVVIFTTLVDALCKEGMVTIAHDVVDV 309

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           ++ +G E +V  +T  +        + EA      M+     P   +++ L+ G  K+
Sbjct: 310 MIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKI 367



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 124/315 (39%), Gaps = 39/315 (12%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+   +  ++ ++  M+          +M+  G  +DV T   +I+ FC   ++D  + +
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L                                    ++ K+G  PD + +  +IR  C 
Sbjct: 132 L-----------------------------------AKIFKLGHQPDTATFTTLIRGLCV 156

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++ EA++++++M      P   ++  ++HG    G    A    + MV +     P  
Sbjct: 157 EGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKN--CEPNV 214

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   +++ L + ++V  A +++S ++ KG   NV  +   IH L      K   +   +
Sbjct: 215 ITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNE 274

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGE--RDL 608
           M+D+ +MP    F  L+  L K     IA ++ + + +   E  +        G   R  
Sbjct: 275 MVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSE 334

Query: 609 KEKAKKQVDGRKRRA 623
            ++A K  D   R+ 
Sbjct: 335 MDEADKVFDTMVRKG 349



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 3/235 (1%)

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           ID      + M+     P+ + +  I+ +    +     + L  +M  +G   DV    +
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           VI   C L  +    +V  ++      P T +F  ++ G   +G + EA   F +MVG G
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T   L++ L +      A  +   +V K CE NV  +   I  LF +  V E
Sbjct: 175 F--QPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNE 232

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN-RQIAAEITEKVRKMAAERQITF 597
           A +   +M+   + P   T+  ++ GL K    + +A  + E V        + F
Sbjct: 233 ALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIF 287


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 214/436 (49%), Gaps = 9/436 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    KM +      +++ MR +   P  +T   + I++    S   +  A++VL+
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVT---YNIMIGSLCSRGKLDLALKVLN 217

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++    C+P    +  L++A      V EA KL DEM  R  KP +  + +++ G CKEG
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  ++  ++  G EPD++ YN LL      GK  +  +L+ +M  + CDPN  +Y+
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYS 337

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LCR  K+EEA      M+  G   D  +Y  LI+ FC+  ++D   E L++MI  
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LP+ + Y  ++    K  + ++ +E+ G++ ++GC P+ S+YN +       G+   A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +++  EM +  + P   ++  M+     +G + EA E   +M  R     P   T   +L
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDM--RSCEFHPSVVTYNIVL 515

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               +A ++E A +V   +V  GC  N   +T+ I  +   G+  EA     D++  D +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575

Query: 558 PQPDTFAKLMRGLKKL 573
            +  +F +L R    L
Sbjct: 576 SEY-SFKRLHRTFPLL 590



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 201/397 (50%), Gaps = 3/397 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T++  I  R   S   ++ ++ +L+ M + G  PD  +   L+       ++ +A ++ +
Sbjct: 90  TQMLKIFHRSCRSGNYIE-SLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 234 EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
            + +  +P +  + +L+ G+CK  ++ +A  VL +M+   F PD V YN ++      GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +  A ++L ++    C P   +YT+LI+A      ++EA +   EM   G + D+ TY T
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I G CK   +DR +E++ ++  +G  P+ ++Y  ++ A   + + EE  +LM +M    
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C P+V  Y+++I   C+ G+++EA+N+   M+   L+P   S+  ++  F  +G L  A 
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 388

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E+ + M+  G L  P       +L +L +  K + A +++  +   GC  N  ++     
Sbjct: 389 EFLETMISDGCL--PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 446

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +L+S+G    A    L+MM   + P   T+  ++  L
Sbjct: 447 ALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 87/214 (40%), Gaps = 38/214 (17%)

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+S        +L++M+++G  P+ +    ++        + + V +M  + K G  PDV
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   CK+  + +A  V + M +   SP T ++ +M+     +G           
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG----------- 207

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
                                     K+++A  V + +++  C+  V  +TI I +    
Sbjct: 208 --------------------------KLDLALKVLNQLLSDNCQPTVITYTILIEATMLE 241

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G V EA     +M+   + P   T+  ++RG+ K
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 213/452 (47%), Gaps = 11/452 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  L+ +L    KF  +  L   M+K+   P + T   + IL++       V  A ++ 
Sbjct: 146 IYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFT---YNILLKALCKNDRVDAAHKLF 202

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
            EM   GC PD   +  ++ +LCK   + +A     E+  RFKPS+  + +L+ G CKEG
Sbjct: 203 VEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR----ELAGRFKPSVPVYNALIDGMCKEG 258

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A  +L +M D G +P++V Y+ +++     G +  AF L  +M  +GCD N +++T
Sbjct: 259 RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFT 318

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+      K+ EA   +  M + GCE +VV Y TLI G C +  ++   ++ D M + 
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LPN  TY  ++    K  +L    E    M   GC P+V  Y  ++ + CK     +A
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            ++  +M     +P T +F   + G  G G +  A +  + M G G L  P   T   LL
Sbjct: 439 NSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCL--PNITTYNELL 496

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++L R  K E A  ++  I  +  + N+  +   ++     G + EA       +     
Sbjct: 497 DALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTA 556

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           P   T+  ++    K    +IAA++ E+V  M
Sbjct: 557 PDSITYNTMIHAYCKQGKVKIAAQLVERVSSM 588



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 197/454 (43%), Gaps = 8/454 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           ++K L   R   +V      +        T   + +++ R      +     +L +M   
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEA 262
           G    E +F C+++   +  S ++A K+F  + E   KP++R +  LL     E K    
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMI 163

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +   MK  G  P++  YN LL    +  ++  A +L  EM  KGC P+A +YT ++ +
Sbjct: 164 NPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSS 223

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+  K+++A       + S     V  Y  LI G CK  +I+   ++L  M+  G+ PN
Sbjct: 224 LCKAGKIDDARELAGRFKPS-----VPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPN 278

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            ++Y  I+ +      +E    L  +M   GC  ++  +  +I+     G+L EA+++W 
Sbjct: 279 VVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK 338

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M      P   ++  ++HG    G L EA +   +M   G L  P   T   L++   +
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL--PNVTTYSILIDGFAK 396

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +  +  A + W+ +++ GC  NV  +T  +  L  N    +A S    M      P   T
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTIT 456

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           F   ++GL      + A ++ E+++       IT
Sbjct: 457 FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNIT 490



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 11/300 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN V     Y  LI  L           + ++M++    P + T   + IL+  FA + 
Sbjct: 346 EPNVV----AYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT---YSILIDGFAKSG 398

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFT 247
            +  A E  + M  +GC P+   + C++D LCKNS   +A  L ++M  E   P+   F 
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFN 458

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           + + G C  G++  A  +L +M+  G  P+I  YN LL    +M K  +AF L +E+  +
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  +Y  ++    R   M EA + F +    G   D +TY T+I  +CK  K+   
Sbjct: 519 NLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIA 578

Query: 368 YEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            ++++ +   +   P+ +TY  ++        +EE +  + +    G  P+ + +N ++R
Sbjct: 579 AQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVR 638



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 11/252 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y  ++  L K   F    +L+E+M  E   P  IT   F+   +      
Sbjct: 416 RPNVV----TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFI---KGLCGNG 468

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V+ A+++L+ M  +GC P+   +  LLDAL + +  +EA  LF E+  R  +P+L  + 
Sbjct: 469 RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYN 528

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR- 306
           ++LYG+ + G + EA  +  +    G  PD + YN ++  Y + GK+  A +L++ +   
Sbjct: 529 TVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSM 588

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K   P+  +YT LI   C    +EEA     +    G   +  T+  L+  F  S     
Sbjct: 589 KEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMG 648

Query: 367 CYEILDSMIQRG 378
              ILD ++++G
Sbjct: 649 PIHILDDILRKG 660


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 224/493 (45%), Gaps = 41/493 (8%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ WA  Q +Y H    Y  L++ L+K  +   V+                         
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYG------------------------ 38

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
                         ++M   GC P+ + +G LL +LC+    +EA  +F  M  +   P+
Sbjct: 39  ------------TYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPN 86

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  ++ L+ G C+  K+ EA  +L +M D G +P++V Y +LLSG  +MGK+ +A +L  
Sbjct: 87  VFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFS 146

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M  +GC P+   Y VLI    +   M EA R F EM   GC   V TY +L+SGF +  
Sbjct: 147 RMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKG 206

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +  R   +   M+++G +PN  T+ +++    K  ++ E   L  EMR +GC PDV +YN
Sbjct: 207 EFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYN 266

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++R  C  G+  EA  +  EM  + + P   S+ +++ G+   G L  A + F E+   
Sbjct: 267 TLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKS 326

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P   +   +++ L RA KV  A  V+  ++  G   +       +  L     + 
Sbjct: 327 GL--EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLT 384

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV--RKMAAERQITFKMY 600
           E+C     M+  + +P    +  LM  L K        EI  ++  R  + + +I+  + 
Sbjct: 385 ESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444

Query: 601 KRRGERDLKEKAK 613
           +     D KE A+
Sbjct: 445 ETLRRSDDKEAAE 457


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 201/416 (48%), Gaps = 12/416 (2%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQ-PNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           P L  + + R  + G     ++    +  P+Y HS   +   +   ++MR F + WAL+ 
Sbjct: 66  PELVNKTLKRLWNHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVG 125

Query: 163 EMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
            MR  +  P   + +   IL  R+AS     +A+     M ++G   D   F  LLD LC
Sbjct: 126 RMRSLRLGP---SPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILC 182

Query: 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           K++ V+ A  L   ++ RF+P    +  L  G+C + +   A  VL +M   G EP +V 
Sbjct: 183 KSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVT 242

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN +L GY +  ++ +A+E   EM+++ C+ +  SYT +I       ++++A R F EM 
Sbjct: 243 YNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMV 302

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEEL 399
           + G   +V TY  LI  FCK   +     + + M++ G+  PN +T+  ++       ++
Sbjct: 303 KEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDM 362

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           E  +  M  M + G    V  YNVVIR  C  GE+++ + V+ +M      P  D++ V+
Sbjct: 363 ERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVL 422

Query: 460 VHGFLGQG---CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
           +     +     L+ A +   EMV RG L  P+  T   +LN L+     + AKD+
Sbjct: 423 ISAMFVRKKSEDLVVAGKLLMEMVERGFL--PRKFTFNRVLNGLVITGNQDFAKDI 476



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 94/196 (47%), Gaps = 5/196 (2%)

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M + G   D+ ++N ++ + CK   ++ A ++   +++    P T S+ ++ +G+  +  
Sbjct: 162 MHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKS-RFRPDTVSYNILANGYCLKKR 220

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
              A    KEMV RG+   P   T   +L    R+ +++ A + +  +  + CE++V ++
Sbjct: 221 TPMALRVLKEMVQRGI--EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSY 278

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           T  IH     G VK+A     +M+   V P   T+  L++   K  + Q A  + E++ +
Sbjct: 279 TTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVR 338

Query: 589 --MAAERQITFKMYKR 602
             + +   +TF +  R
Sbjct: 339 EGVCSPNVVTFNVVIR 354



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y ALI+   K        A+ EEM +E    P ++T   F +++R       +++A+  +
Sbjct: 313 YNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVT---FNVVIRGLCHVGDMERALGFM 369

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWC-- 254
           + M ++G       +  ++   C    +++  ++F +M +    P+L  +  L+      
Sbjct: 370 ERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVR 429

Query: 255 -KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            K   LV A  +L++M + GF P    +N +L+G    G    A ++L+   R G
Sbjct: 430 KKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSRCG 484


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 211/476 (44%), Gaps = 76/476 (15%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T   +  L+  +     V++ +++L EM + GC P++  +  L++ L K    ++
Sbjct: 231 KPTIVT---YNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 287

Query: 228 AAKLFDEMRER------------------------------------FKPSLRHFTSLLY 251
           A  L  EM +                                       P++  + S +Y
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G++ +A   L  M      PD+V YN L+ GY ++G +  AF L  E+R     P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
              +Y  L+  LCR  ++E A +  VEM   G   D+VTYT L++G CK   +    E  
Sbjct: 408 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFF 467

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D M+  G+  +   Y   ++   K  +      L  EM   G  PD+  YNVV+   CKL
Sbjct: 468 DEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKL 527

Query: 432 GELKEAV-----------------------------------NVWNEMEAASLSPGTDSF 456
           G L+EA                                     ++ EM +  L+P   ++
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTY 587

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            V++HG  G+G L  A  YF EM  +G+L  P   T  +L+N L + ++++ A + ++ +
Sbjct: 588 TVLIHGHAGKGRLERAFIYFSEMQEKGIL--PNVITYNSLINGLCKVRRMDQAYNFFAEM 645

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           V KG   N Y++TI I+   + G+ +EA S    M+D  V P   T + L++ L K
Sbjct: 646 VEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGK 701



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/498 (25%), Positives = 230/498 (46%), Gaps = 31/498 (6%)

Query: 93  LALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR 152
           L+ Q   V++ P L  RV++    +  +  R + WA  QP +  S  V+ A+++ L++  
Sbjct: 70  LSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNN 129

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF-- 210
              + + +ME                    R  +A M  + ++VL      GC   E   
Sbjct: 130 LMRSAYWVME--------------------RVINANM-HRIVDVLIG----GCVSSEVSV 164

Query: 211 -VFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
            +   L+    K S V++   +FD+M + R  P +++   +L     +  + +A  V   
Sbjct: 165 KILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT 224

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M + G +P IV YN LL  Y + GK+    +LL EM+R+GC PN  +Y VLI  L +  +
Sbjct: 225 MGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
            E+A     EM ++G +    TY  LI G+     +     + + M+ +G  P   TY  
Sbjct: 285 FEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNS 344

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
            +    K   + + ++ + +M     +PDV +YN +I   C+LG L +A  +++E+ +  
Sbjct: 345 FIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 404

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L P   ++  ++ G   QG L  A +   EM+  G+  AP   T   L+N   +   + M
Sbjct: 405 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI--APDIVTYTILVNGSCKMGSLSM 462

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A++ +  ++ +G EL+ YA+   I      G    A S   +M+     P    +  ++ 
Sbjct: 463 AQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 522

Query: 569 GLKKLYNRQIAAEITEKV 586
           GL KL N + A+E+ +K+
Sbjct: 523 GLCKLGNLEEASELLQKM 540


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 213/452 (47%), Gaps = 11/452 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  L+ +L    KF  +  L   M+K+   P + T   + IL++       V  A ++ 
Sbjct: 146 IYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFT---YNILLKALCKNDRVDAAHKLF 202

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
            EM   GC PD   +  ++ +LCK   + +A     E+  RFKPS+  + +L+ G CKEG
Sbjct: 203 VEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR----ELAGRFKPSVPVYNALIDGMCKEG 258

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A  +L +M D G +P++V Y+ +++     G +  AF L  +M  +GCD N +++T
Sbjct: 259 RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFT 318

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+      K+ EA   +  M + GCE +VV Y TLI G C +  ++   ++ D M + 
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LPN  TY  ++    K  +L    E    M   GC P+V  Y  ++ + CK     +A
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            ++  +M     +P T +F   + G  G G +  A +  + M G G L  P   T   LL
Sbjct: 439 NSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCL--PNITTYNELL 496

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++L R  K E A  ++  I  +  + N+  +   ++     G + EA       +     
Sbjct: 497 DALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTA 556

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           P   T+  ++    K    +IAA++ E+V  M
Sbjct: 557 PDSITYNTMIHAYCKQGKVKIAAQLVERVSSM 588



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 197/454 (43%), Gaps = 8/454 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           ++K L   R   +V      +        T   + +++ R      +     +L +M   
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEA 262
           G    E +F C+++   +  S ++A K+F  + E   KP++R +  LL     E K    
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMI 163

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +   MK  G  P++  YN LL    +  ++  A +L  EM  KGC P+A +YT ++ +
Sbjct: 164 NPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSS 223

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+  K+++A       + S     V  Y  LI G CK  +I+   ++L  M+  G+ PN
Sbjct: 224 LCKAGKIDDARELAGRFKPS-----VPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPN 278

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            ++Y  I+ +      +E    L  +M   GC  ++  +  +I+     G+L EA+++W 
Sbjct: 279 VVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK 338

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M      P   ++  ++HG    G L EA +   +M   G L  P   T   L++   +
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL--PNVTTYSILIDGFAK 396

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +  +  A + W+ +++ GC  NV  +T  +  L  N    +A S    M      P   T
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMT 456

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           F   ++GL      + A ++ E+++       IT
Sbjct: 457 FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNIT 490



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 11/300 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN V     Y  LI  L           + ++M++    P + T   + IL+  FA + 
Sbjct: 346 EPNVV----AYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT---YSILIDGFAKSG 398

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFT 247
            +  A E  + M  +GC P+   + C++D LCKNS   +A  L ++M  E   P+   F 
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFN 458

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           + + G C  G++  A  +L +M+  G  P+I  YN LL    +M K  +AF L +E+  +
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  +Y  ++    R   M EA + F +    G   D +TY T+I  +CK  K+   
Sbjct: 519 NLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIA 578

Query: 368 YEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            ++++ +   +   P+ +TY  ++        +EE +  + +    G  P+ + +N ++R
Sbjct: 579 AQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVR 638



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 11/252 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y  ++  L K   F    +L+E+M  E   P  +T   F+   +      
Sbjct: 416 RPNVV----TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFI---KGLCGNG 468

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V+ A+++L+ M  +GC P+   +  LLDAL + +  +EA  LF E+  R  +P+L  + 
Sbjct: 469 RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYN 528

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR- 306
           ++LYG+ + G + EA  +  +    G  PD + YN ++  Y + GK+  A +L++ +   
Sbjct: 529 TVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSM 588

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K   P+  +YT LI   C    +EEA     +    G   +  T+  L+  F  S     
Sbjct: 589 KEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMG 648

Query: 367 CYEILDSMIQRG 378
              ILD ++++G
Sbjct: 649 PIHILDDILRKG 660


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 229/474 (48%), Gaps = 44/474 (9%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V    +Y+ LI SLSK  +      L+EEM      P   T    ++ + +F     
Sbjct: 250 PNSV----IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR--- 302

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF----------------- 232
           + +A ++++ M   G  PD+  +G L++ LCK   V  A  LF                 
Sbjct: 303 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHG 362

Query: 233 -------DEMRERFK---------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
                  D+ +             P +  + SL+YG+ KEG +  A  VL  M++ G +P
Sbjct: 363 FVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP 422

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           ++  Y  L+ G+ ++GK+ +A+ +L EM   G  PN   +  LI A C+  ++ EA   F
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM R GC+ DV T+ +LISG C+  +I     +L  MI  G++ N +TY  ++ A  ++
Sbjct: 483 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRR 542

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            E++E  +L+ EM   G   D   YN +I+  C+ GE+ +A +++ +M     +P   S 
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISC 602

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            ++++G    G + EA E+ KEMV RG  S P   T  +L+N L RA ++E    ++  +
Sbjct: 603 NILINGLCRSGMVEEAVEFQKEMVLRG--STPDIVTFNSLINGLCRAGRIEDGLTMFRKL 660

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +G   +   +   +  L   G V +AC    + ++   +P   T++ L++ +
Sbjct: 661 QAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 225/480 (46%), Gaps = 37/480 (7%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + W   Q  Y HS+DVY+ LI  L    +F  +  L+ +M+ E   +    +F+ +MR +
Sbjct: 98  FSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEG-IVFKESLFISIMRDY 156

Query: 185 ASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
             A    +   ++ EM   Y CEP    +  +L+ L   +  K AA +F +M  R   P+
Sbjct: 157 DKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPT 216

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L  F  ++  +C   ++  A  +L  M   G  P+ V+Y  L+   ++  ++ +A +LL+
Sbjct: 217 LFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 276

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   GC P+A ++  +I  LC+ +++ EA +    M   G   D +TY  L++G CK  
Sbjct: 277 EMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIG 336

Query: 363 KIDRCYEIL--------------------------------DSMIQRGILPNQLTYLHIM 390
           ++D   ++                                 D +   GI+P+  TY  ++
Sbjct: 337 RVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
             + K+  +   +E++ +MR  GC P+V +Y +++   CKLG++ EA NV NEM A  L 
Sbjct: 397 YGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK 456

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P T  F  ++  F  +  + EA E F+EM  +G    P   T  +L++ L    +++ A 
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHAL 514

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +   ++++G   N   +   I++    G +KEA     +M+         T+  L++GL
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 165/332 (49%), Gaps = 6/332 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K    G    ++ +MR +  KP + +   + IL+  F     + +A  VL+
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS---YTILVDGFCKLGKIDEAYNVLN 448

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +P+   F CL+ A CK   + EA ++F EM R+  KP +  F SL+ G C+  
Sbjct: 449 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 508

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A ++L  M   G   + V YN L++ + + G++ +A +L+ EM  +G   +  +Y 
Sbjct: 509 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYN 568

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+ LCR  ++++A   F +M R G     ++   LI+G C+S  ++   E    M+ R
Sbjct: 569 SLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLR 628

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ +T+  ++    +   +E+ + +  +++  G  PD   +N ++   CK G + +A
Sbjct: 629 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
             + +E       P   ++ +++   + Q  L
Sbjct: 689 CLLLDEGIEDGFVPNHRTWSILLQSIIPQETL 720



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 141/308 (45%), Gaps = 45/308 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V+SY +   L+    K+ K    + ++ EM  +  KP  +    F  L+  F    
Sbjct: 421 KPN-VYSYTI---LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG---FNCLISAFCKEH 473

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC---------------------------- 220
            + +A+E+  EMP+ GC+PD + F  L+  LC                            
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533

Query: 221 -------KNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
                  +   +KEA KL +EM  +  P     + SL+ G C+ G++ +A+ +  +M   
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  P  +  N L++G  + G + +A E  KEM  +G  P+  ++  LI  LCR  ++E+ 
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 653

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
              F +++  G   D VT+ TL+S  CK   +     +LD  I+ G +PN  T+  ++ +
Sbjct: 654 LTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713

Query: 393 HEKKEELE 400
              +E L+
Sbjct: 714 IIPQETLD 721


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 224/444 (50%), Gaps = 28/444 (6%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           LE AL  +G+     L   + +R   +  L +  + WA  +P +  S  ++ +++ SL K
Sbjct: 88  LESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCK 147

Query: 151 MRKFGAVWALM-EEMRK-EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP- 207
            R+F   W+L+ + +R  E   L++ + F++L+RR+A A MV++AI   +    Y  EP 
Sbjct: 148 AREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSY--EPV 205

Query: 208 -----DEFVFGCLLDALCKNSSVKEAA----KLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
                +  +   LLDALCK   V+EA+    ++   M   + PS+R F  LL GW +  K
Sbjct: 206 CKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRK 265

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L +A+ +  +MK    +P +V Y  L+ GY +M ++  A E+L+EM+    + N   +  
Sbjct: 266 LKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNP 325

Query: 319 LIQALCRMEKMEEA----NRAFVEMERSGCEA--DVVTYTTLISGFCKSRKIDRCYEILD 372
           +I  L    ++ EA     R FV      CE+   +VTY +L+  FCK+  +    +IL 
Sbjct: 326 IIDGLGEAGRLSEALGMMERFFV------CESGPTIVTYNSLVKNFCKAGDLPGASKILK 379

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ RG+ P   TY H      K  + EE + L  ++ + G  PD   Y++++++ C+ G
Sbjct: 380 MMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDG 439

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +L  A+ V  EM+   + P   +  +++H       L EA E F   V RG++  PQY T
Sbjct: 440 KLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGII--PQYIT 497

Query: 493 LKALLNSLLRAQKVEMAKDVWSCI 516
            K + N L      +MAK + S +
Sbjct: 498 FKMIDNGLRSKGMSDMAKRLSSLM 521


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 224/460 (48%), Gaps = 12/460 (2%)

Query: 60  TTDTHGSHNEFSHDVEKIF-RILKKFHSRLPKLEL--ALQHSGVVLRPGLTERVINRCGD 116
           + +   S   F H     F + L KF    P  +L  AL   G  L   L   V+ R   
Sbjct: 20  SNNVKTSTPRFVHSCPATFIQNLLKFRRDKPTEQLYRALDQCGFDLNHDLVLDVLRRHRS 79

Query: 117 AGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE 175
                + ++ WASK    Y  S DV   ++  L KM++F  +  +++EM K + +L+   
Sbjct: 80  DWRPAHVFFNWASKTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSK-REELLDEA 138

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DE 234
           VF  L+RRF  A  V +AI++     ++G E +   F  LL  LC+   V++A  LF + 
Sbjct: 139 VFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNS 198

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +++  +  ++ +  +L GWC  G   EAK V   +  +  +PDI  Y   +    + GK+
Sbjct: 199 VKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKL 258

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A +L + M  KG  P+      +I ALC  +++ EA   F +M   GCE +V TY +L
Sbjct: 259 GTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSL 318

Query: 355 ISGFCKSRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           I   CK +++ + YE++D M ++    LPN +TY +++   +  +E  E   ++  M + 
Sbjct: 319 IKYMCKIQRMKKVYELVDEMERKKGSCLPNAVTYCYLL---KSLKEPGEVCRVLERMERN 375

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           GC  +   YN+V+RL  K  +       W EME     P   S+ +M+H    +G + +A
Sbjct: 376 GCGMNDDVYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDA 435

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             Y +EM+ +G++   +   L + +N  L+ +  E  +DV
Sbjct: 436 VRYLEEMISKGMVPERRTEKLVSSMNIRLKGRS-EKQEDV 474



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 157/362 (43%), Gaps = 8/362 (2%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEA 262
           G +P   V   ++D L K    +E  ++ DEM +R +      F +L+  +    K+ EA
Sbjct: 97  GYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDEA 156

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +  + K+ G E +   +  LL    +   + DA  L     +KG   +   + V++  
Sbjct: 157 IQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNG 216

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            C +    EA R + ++  S C+ D+ TY T I    K  K+    ++   M  +G  P+
Sbjct: 217 WCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPD 276

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +    I+ A   K+ + E +E+  +M + GC P+V+ YN +I+  CK+  +K+   + +
Sbjct: 277 VVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMKKVYELVD 336

Query: 443 EME--AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           EME    S  P   ++  ++      G   E C   + M   G            +L   
Sbjct: 337 EMERKKGSCLPNAVTYCYLLKSLKEPG---EVCRVLERMERNG--CGMNDDVYNMVLRLY 391

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
           ++    +  +  W  +   G   +  ++TI IH  F  G VK+A  Y  +M+   ++P+ 
Sbjct: 392 MKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEEMISKGMVPER 451

Query: 561 DT 562
            T
Sbjct: 452 RT 453



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 4/222 (1%)

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            T I    K R+     ++  ++ Q G   N    L ++  H                  
Sbjct: 36  ATFIQNLLKFRRDKPTEQLYRALDQCGFDLNHDLVLDVLRRHRSDWRPAHVFFNWASKTT 95

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  P     N ++ +  K+   +E   V +EM           F  +V  F+G   + E
Sbjct: 96  TGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDE 155

Query: 472 ACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           A + F      GL L++  + TL   L  L R + VE A+ ++   V KG   ++  W +
Sbjct: 156 AIQLFYRRKEFGLELNSEAFRTL---LMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNV 212

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            ++     G+  EA     D++ +   P   T+A  ++ L K
Sbjct: 213 ILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTK 254


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 154/590 (26%), Positives = 263/590 (44%), Gaps = 52/590 (8%)

Query: 13  TKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSH 72
           T HR  +F+  PN    H+ +T +++  L S  + L       +    ++ H  HN    
Sbjct: 15  TSHRLTAFSHNPN----HISNTCSSSPSLVSPFIWLSCFICLIRFPFVSNRH-FHNFDCF 69

Query: 73  DVEKI-----------FRILKKFHSRLPKLELALQHSGVVLRPGLTERV-INRCGDAGNL 120
           D + +           FRI+  F S               L P    RV +  C DA  L
Sbjct: 70  DKDSVREIVREQRWDDFRIVSLFDS--------------ALAPIWASRVLVELCQDA-RL 114

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM---RKEKPQLITTE-- 175
             R++ WA  +  + H+ + Y  L+  L   R +    A+++E+   R+  P     +  
Sbjct: 115 ALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWDVFDLL 174

Query: 176 ------------VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
                       VF  L        M+++A E   +M K+   P       LL  L K  
Sbjct: 175 WATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVG 234

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
               + K F +M     K S+  +  ++   CKEG L  A+ +  QMK+AGF PDIV YN
Sbjct: 235 RGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYN 294

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L+ G+ ++G + +   + ++M+   CDP+  +Y  LI   C+ E+M +A     EM+ +
Sbjct: 295 SLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKAN 354

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G + +VVTY+T I  FCK   +    +    M +  + PN+ TY  ++ A+ K   L E 
Sbjct: 355 GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEA 414

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++L+ E+ + G   +V  Y  ++   C+ G +KEA  V+  M  A ++P  +++  +VHG
Sbjct: 415 LKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHG 474

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F+    +  A +  KEM  + +   P       +L  L    ++E AK +   I   G  
Sbjct: 475 FIKAKEMEYAKDILKEMKEKCI--KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGIN 532

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            N   +T  + + F +G   EA +   +M+D  ++    T+  L+ GL K
Sbjct: 533 TNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCK 582



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 221/470 (47%), Gaps = 11/470 (2%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASA 187
           K+  +      Y +LI    K+        + E+M+     P +IT   +  L+  F   
Sbjct: 282 KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVIT---YNALINCFCKF 338

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHF 246
             + KA E L EM   G +P+   +   +DA CK   ++EA K F +MR     P+   +
Sbjct: 339 ERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTY 398

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           TSL+   CK G L EA  ++ ++  AG + ++V Y  LL G  + G+M +A E+ + M  
Sbjct: 399 TSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLN 458

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  PN  +YT L+    + ++ME A     EM+    + D++ Y T++ G C   +++ 
Sbjct: 459 AGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEE 518

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              ++  + + GI  N + Y  +M A+ K  +  E + L+ EM  +G +     Y  +I 
Sbjct: 519 AKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALID 578

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G ++EA++ +  M    L P    +  +V G     C   A + F EM+ +G++ 
Sbjct: 579 GLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM- 637

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P      AL++  ++   ++ A ++   ++  G EL+++A+T  I  L  +G V++A +
Sbjct: 638 -PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARN 696

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
              +M+   V+P    +  L   +KK Y      E  E   +MA    IT
Sbjct: 697 LLDEMIGKGVLPDEVVYMCL---IKKYYALGKVDEALELQNEMAKRGMIT 743



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 150/354 (42%), Gaps = 37/354 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +  K         L+EE+ +   +L       +L       RM K+A EV   M
Sbjct: 398 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRM-KEAEEVFRAM 456

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  P++  +  L+    K   ++ A  +  EM+E+  KP L  + ++L+G C E +L
Sbjct: 457 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRL 516

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM--------------- 304
            EAK ++ ++K++G   + V+Y  L+  Y + G+ T+A  LL+EM               
Sbjct: 517 EEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCAL 576

Query: 305 --------------------RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
                                  G  PN   YT L+  LC+    E A + F EM   G 
Sbjct: 577 IDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGM 636

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             D + YT LI G  K   +     + D MI+ G+  +   Y  ++       ++++   
Sbjct: 637 MPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARN 696

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L+ EM   G +PD   Y  +I+    LG++ EA+ + NEM    +  G     V
Sbjct: 697 LLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAV 750



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 152/305 (49%), Gaps = 10/305 (3%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVI 179
           +R  + A   PN     + Y AL+    K ++      +++EM+++  KP L+   ++  
Sbjct: 453 FRAMLNAGVAPNQ----ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLL---LYGT 505

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++    +   +++A  ++ E+ + G   +  ++  L+DA  K+    EA  L +EM +  
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
              +   + +L+ G CK G + EA +   +M + G +P++ VY  L+ G  +      A 
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +L  EM  KG  P+  +YT LI    +   ++EA      M   G E D+  YT LI G 
Sbjct: 626 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGL 685

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
             S ++ +   +LD MI +G+LP+++ Y+ ++  +    +++E +EL  EM K G +  +
Sbjct: 686 SHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGL 745

Query: 419 SNYNV 423
           S++ V
Sbjct: 746 SDHAV 750


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 215/435 (49%), Gaps = 17/435 (3%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           +S+D  R   +   +  + G  W               T  + I++        VK+A  
Sbjct: 228 NSFDGIRTAFRVFREYSEVGVCW--------------NTVSYNIILHLLCQLGKVKEAHS 273

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           +L +M   G  PD   +  ++D  C+   + +  KL +E+ R+  KP+   + S++   C
Sbjct: 274 LLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLC 333

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K G++VEA+ VL  MK+    PD VVY  L+SG+ + G ++  ++L  EM+RK   P+  
Sbjct: 334 KTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFV 393

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT +I  LC+  K+ EA + F EM   G + D VTYT LI G+CK+ ++   + + + M
Sbjct: 394 TYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM 453

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           +++G+ PN +TY  ++    K  E++   EL+ EM + G  P+V  YN +I   CK+G +
Sbjct: 454 VEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNI 513

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           ++AV +  EM+ A   P T ++  ++  +   G + +A E  + M+ +GL   P   T  
Sbjct: 514 EQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGL--QPTIVTFN 571

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+N    +  +E  + +   ++ KG   N   +   +       +++        M   
Sbjct: 572 VLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQ 631

Query: 555 DVMPQPDTFAKLMRG 569
            V+P  +T+  L++G
Sbjct: 632 GVVPDTNTYNILIKG 646



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 183/350 (52%), Gaps = 6/350 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY  LI    K       + L +EM+++K  P  +T   +  ++     A  V +A ++ 
Sbjct: 359 VYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVT---YTSMIHGLCQAGKVVEARKLF 415

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM   G +PDE  +  L+D  CK   +KEA  L ++M E+   P++  +T+L+ G CK 
Sbjct: 416 SEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKC 475

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++  A  +L +M + G +P++  YN L++G  ++G +  A +L++EM   G  P+  +Y
Sbjct: 476 GEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITY 535

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T ++ A C+M +M +A+     M   G +  +VT+  L++GFC S  ++    ++  M+ 
Sbjct: 536 TTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLD 595

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI+PN  T+  +M  +  +  +   +E+   M   G VPD + YN++I+  CK   +KE
Sbjct: 596 KGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKE 655

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           A  +  EM     S    S+  ++ GF  +    EA + F+EM   G ++
Sbjct: 656 AWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIA 705



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 150/306 (49%), Gaps = 6/306 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  +    ++L  +M ++   P ++T   +  L+        V  A E+L 
Sbjct: 430 YTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVT---YTALVDGLCKCGEVDIANELLH 486

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM + G +P+   +  L++ LCK  ++++A KL +EM    F P    +T+++  +CK G
Sbjct: 487 EMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMG 546

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A  +L  M D G +P IV +N L++G+   G + D   L+K M  KG  PNA ++ 
Sbjct: 547 EMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFN 606

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L++  C    M      +  M   G   D  TY  LI G CK+R +   + +   M+++
Sbjct: 607 SLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEK 666

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G      +Y  ++    K+++ EE  +L  EMR  G + +   Y++ + +  + G  +  
Sbjct: 667 GFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENT 726

Query: 438 VNVWNE 443
           + + +E
Sbjct: 727 LELCDE 732



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 10/250 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QPN       Y ALI  L K+        LMEEM      P  IT   +  +M  +    
Sbjct: 494 QPNVC----TYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTIT---YTTIMDAYCKMG 546

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA E+L  M   G +P    F  L++  C +  +++  +L   M ++   P+   F 
Sbjct: 547 EMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFN 606

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SL+  +C    +     +   M   G  PD   YN L+ G+ +   M +A+ L KEM  K
Sbjct: 607 SLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEK 666

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G    A SY  LI+   + +K EEA + F EM   G  A+   Y   +    +    +  
Sbjct: 667 GFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENT 726

Query: 368 YEILDSMIQR 377
            E+ D  I++
Sbjct: 727 LELCDEAIEK 736


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 202/433 (46%), Gaps = 41/433 (9%)

Query: 177 FVILMRRFASARMVKKAIE-VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           F  L+R   + +    A+  VL  MP+ GC PD F +  LL  LC     +EAA+L   M
Sbjct: 51  FTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMM 110

Query: 236 RE---RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV------------ 280
            E      P +  ++++++G+ KEG + +A  +  +M D G  P++V             
Sbjct: 111 AEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQ 170

Query: 281 -----------------------YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
                                  YN+L+ GY   G+ T+A  +LKEM R G  PN  +Y 
Sbjct: 171 AMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYN 230

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LC+     EA   F  M +SG + D  TY +L+ G+     +     + D M+Q 
Sbjct: 231 MLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQN 290

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+  N  T+   + A+ K   L+E      +M+++G +PD+  Y  VI   CK+G L +A
Sbjct: 291 GMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDA 350

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++ + +M    LSP   +F  ++HGF   G   +A E F EM+ RG+   P      A++
Sbjct: 351 MSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGI--PPDVTIFTAMI 408

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + L +  KV  A+ ++  +   G + NV ++   IH  F  G V E      DM+   + 
Sbjct: 409 DRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLK 468

Query: 558 PQPDTFAKLMRGL 570
           P   TF  L+ G+
Sbjct: 469 PTAVTFNTLLDGM 481



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 186/392 (47%), Gaps = 34/392 (8%)

Query: 118 GNLGYRYYMWA-----SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQ 170
           G++G  Y ++         PN V       ++I  L K++      A++++M  E   P 
Sbjct: 135 GDVGKAYTLFCKMLDHGIPPNVVTC----NSVIDGLCKVQAMDKAEAVLQQMIDEHIMPN 190

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
             T   +  L+  + S+    +A+ +L EM + G  P+   +  L+D LCK+    EA +
Sbjct: 191 CTT---YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEARE 247

Query: 231 LFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +F+ M +   KP    + SLL+G+  EG LVE   V   M   G   +   ++  +  Y 
Sbjct: 248 IFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYC 307

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G++ +A     +M++ G  P+  +YT +I  LC++ ++++A   F +M   G   +++
Sbjct: 308 KCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNII 367

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T+TTLI GF    K ++  E+   M+ RGI P+   +  ++    K+ ++ E  +L   M
Sbjct: 368 TFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLM 427

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG-- 467
            + G  P+V +YN +I      GE+ E + + ++M    L P   +F  ++ G +  G  
Sbjct: 428 PRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLK 487

Query: 468 -------CLIEAC----------EYFKEMVGR 482
                   LI++C            F+EM+G+
Sbjct: 488 PDVDTCKTLIDSCCEDGRIEDILTLFREMLGK 519



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 171/382 (44%), Gaps = 13/382 (3%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH----FTSLLYGWCKEGKLVEA 262
           PD   FG L+   C    +      F  + +  K  LR     FT LL   C + +  +A
Sbjct: 11  PDIATFGILISCCCDAGCLNLG---FAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDA 67

Query: 263 -KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNANSYTVL 319
              VL +M + G  PD+  Y+ LL G     K  +A EL+  M   G  C P+  SY+ +
Sbjct: 68  MNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTV 127

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I    +   + +A   F +M   G   +VVT  ++I G CK + +D+   +L  MI   I
Sbjct: 128 IHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHI 187

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +PN  TY  ++  +    +  E V ++ EM + G  P+V  YN++I   CK G   EA  
Sbjct: 188 MPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEARE 247

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++N M  +   P   ++  ++HG+  +G L+E       MV  G+ S   + T    + +
Sbjct: 248 IFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRS--NHHTFSIEIYA 305

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +  +++ A   +  +   G   ++  +T  I  L   G + +A S    M+D  + P 
Sbjct: 306 YCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPN 365

Query: 560 PDTFAKLMRGLKKLYNRQIAAE 581
             TF  L+ G   +Y +   AE
Sbjct: 366 IITFTTLIHGF-SMYGKWEKAE 386



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 153/367 (41%), Gaps = 60/367 (16%)

Query: 94  ALQHSGVVLRPGLTERVINRCGDAGNLGYRYY---MWA------------SKQPNYVHSY 138
           A+  +  VL+  + E ++  C    +L + Y     W              ++PN V   
Sbjct: 171 AMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVV--- 227

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
             Y  LI  L K         +   M +  P+   T  +  L+  +A+   + +   V D
Sbjct: 228 -TYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDAT-TYGSLLHGYATEGNLVEMNNVKD 285

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M + G   +   F   + A CK   + EA+  F +M++  F P +  +T+++ G CK G
Sbjct: 286 LMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIG 345

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A     QM D G  P+I+ +  L+ G++  GK   A EL  EM  +G  P+   +T
Sbjct: 346 RLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFT 405

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI------------- 364
            +I  L +  K+ EA + F  M R+G + +VV+Y T+I G+  + ++             
Sbjct: 406 AMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLI 465

Query: 365 -------------------------DRCYEILDSMIQRGILPNQLTYLHIMLAH-EKKEE 398
                                    D C  ++DS  + G + + LT    ML   +K + 
Sbjct: 466 GLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDT 525

Query: 399 LEECVEL 405
           + E ++L
Sbjct: 526 ITENIKL 532


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 228/478 (47%), Gaps = 21/478 (4%)

Query: 134 YVHS-YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           + HS +D +      L  M K G            +P  +T   F  L+   +S   +  
Sbjct: 20  FCHSNHDHFHFAFSVLGNMFKLGL-----------QPNHVT---FSTLLNGLSSKAKIID 65

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+++ DEM K G EPD   +  +++ LCK  S   A +L  +M E+  KP++  +++++ 
Sbjct: 66  AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
             CK+  + EA   L +M + G  P++V Y+++L G+  +G+  +A  L K+M  +   P
Sbjct: 126 SLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  ++ +L+  L +   + EA   F  M   G E +V TY  L+ G+C   ++D   ++ 
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLF 245

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + M+++G  P+  +Y  ++  H K   ++E   L+ EM      PD   Y+ +++  C+ 
Sbjct: 246 NIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQD 305

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G  ++A  +  EM +  L P   ++ +++ G   QG L EA E  K M    +   P   
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKI--EPNIF 363

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               L+  +    K+E A++++S +  KG + +V  +T+ I  L   G   EAC    DM
Sbjct: 364 IYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM 423

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV--RKMAAERQITFKMYKRRGERD 607
                +P   T+  +++G  +  +   A  + E++  R  +A+   TF+M      RD
Sbjct: 424 AVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSS-TFQMLSDLESRD 480



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 185/427 (43%), Gaps = 80/427 (18%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASAR 188
           QPN+V     +  L+  LS   K      L +EM K   +P +IT    +  + +  S  
Sbjct: 44  QPNHV----TFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTT 99

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           M   AI++L +M + GC+P+  V+  ++D+LCK+  + EA +   EM  R   P++  ++
Sbjct: 100 M---AIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYS 156

Query: 248 SLLYGWC-----------------------------------KEGKLVEAKYVLVQMKDA 272
           S+L+G+C                                   KEG ++EA+ V   M + 
Sbjct: 157 SILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEK 216

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G EP++  YN L+ GY    +M +A +L   M RKGC P+  SY +LI+  C+  +++EA
Sbjct: 217 GVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEA 276

Query: 333 NRAFVEMERSGCEADVVTYTTL-----------------------------------ISG 357
                EM       D VTY+TL                                   + G
Sbjct: 277 KGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDG 336

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK   +D  +E+L +M +  I PN   Y  ++       +LE   EL   +   G  PD
Sbjct: 337 LCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPD 396

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  Y V+I    K G   EA  ++ +M      P + ++ V++ GFL  G    A    +
Sbjct: 397 VVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIE 456

Query: 478 EMVGRGL 484
           EMVGRG 
Sbjct: 457 EMVGRGF 463



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 165/328 (50%), Gaps = 10/328 (3%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y +++     + +     +L ++M  R   P  +T   F IL+   +   M
Sbjct: 150 PNVV----TYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVT---FNILVDGLSKEGM 202

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           + +A  V + M + G EP+   +  L+D  C  S + EA KLF+ M R+   PS+R +  
Sbjct: 203 ILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNI 262

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G CK G++ EAK +L +M      PD V Y+ L+ G+ Q G+  DA +LL+EMR  G
Sbjct: 263 LIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYG 322

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y++++  LC+   ++EA      M+ S  E ++  YT LI G C   K++   
Sbjct: 323 LLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAR 382

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+  ++  +GI P+ +TY  ++    K     E  EL  +M   GC+P+   YNV+I+  
Sbjct: 383 ELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGF 442

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSF 456
            + G+   A  +  EM     S  + +F
Sbjct: 443 LRNGDTSNAGRLIEEMVGRGFSADSSTF 470



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 2/189 (1%)

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           LT L     H   +       ++G M K+G  P+   ++ ++       ++ +AV +++E
Sbjct: 13  LTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDE 72

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M      P   ++  +++G    G    A +  K+M  +G    P       +++SL + 
Sbjct: 73  MVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKG--CKPNVVVYSTIIDSLCKD 130

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           + +  A +  S +V +G   NV  ++  +H   + G   EA S    M++ +VMP   TF
Sbjct: 131 KLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTF 190

Query: 564 AKLMRGLKK 572
             L+ GL K
Sbjct: 191 NILVDGLSK 199


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 215/453 (47%), Gaps = 12/453 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR--MVKKAIEV 196
           Y +LI  L     F     L  +M +    P  +T  V +      AS +  M+++A ++
Sbjct: 48  YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIID-----ASCKRGMLEEACDL 102

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           + +M + G  PD   +  ++D LCK+  V+EA  LF+EM R    P+ R   +++ G C+
Sbjct: 103 IKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 162

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + K+ +A  V  +M+     PD   Y  L+ G A+ GK+ +A++L + M   G  P+A +
Sbjct: 163 QSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVT 222

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y V+I  +C    ++EA   F  M   GC     T+  LI   CK  K+D  + +L  M 
Sbjct: 223 YNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMT 282

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             G +P+ +TY  ++        +++   L+ +M K  C P V   N +I   CK G +K
Sbjct: 283 DDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIK 342

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA  V + M ++  SP   ++  +VHG    G    A E   +MV RGL  AP   T  A
Sbjct: 343 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL--APNVVTYTA 400

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L++ L +A ++  A  V++ + + GC  N++ +T  I    S G V        +M+ A 
Sbjct: 401 LVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG 460

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           + P    +  L   L K      A EI  + R+
Sbjct: 461 ISPDHVVYGTLAAELCKSGRSARALEILREGRE 493



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 215/462 (46%), Gaps = 47/462 (10%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  +M     +  V++A+ + +EM + GC P+      ++  LC+ S + +A
Sbjct: 113 PDVVT---YNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 169

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++F EM  R   P    +  L+ G  K GKL EA  +  +M D+G  P  V YN ++ G
Sbjct: 170 CQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHG 229

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
                 + +A EL K MR KGC P+  ++ +LI A C+  KM+EA R    M   G   D
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPD 289

Query: 348 VVTYTTLISGFC-----------------------------------KSRKIDRCYEILD 372
           VVTY+TLISG C                                   K+ +I    E+LD
Sbjct: 290 VVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 349

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
           +M+  G  P+ +TY  ++  H +  + E   EL+ +M   G  P+V  Y  ++   CK  
Sbjct: 350 AMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKAN 409

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ--- 489
            L EA  V+ +M+++  +P   ++  ++ GF   G +    + F EMV  G+  +P    
Sbjct: 410 RLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI--SPDHVV 467

Query: 490 YGTLKA-LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
           YGTL A L  S   A+ +E+ ++    + ++     VY + +    L   G ++ A  + 
Sbjct: 468 YGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAV--DGLLDAGKMEMALGFV 525

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            DM+    +P P+  A L+ GL K      A  + E++  +A
Sbjct: 526 RDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLA 567



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 205/453 (45%), Gaps = 13/453 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L+K  K      L +++        +T  +  L+     A     A E+  +M
Sbjct: 13  YGILIDGLAKAGKLNDARDLFQKLLHSGVT-PSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKL 259
            + GC P    +  ++DA CK   ++EA  L  +M E    P +  + +++ G CK G++
Sbjct: 72  NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRV 131

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M+  G  P+   +N ++ G  Q  K+  A ++  EM  +   P++ SY +L
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGIL 191

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L +  K+ EA + F  M  SG     VTY  +I G C +  +D   E+  SM  +G 
Sbjct: 192 IDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P++ T+  ++ AH K+ +++E   L+  M   G VPDV  Y+ +I   C +  + +A +
Sbjct: 252 RPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M      P   +   ++HG    G + EA E    MV  G   +P   T   L++ 
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG--QSPDVVTYNTLVHG 369

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             RA + E A+++ S +V +G   NV  +T  +  L     + EAC     M  +   P 
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429

Query: 560 PDTFAKLMRGL---------KKLYNRQIAAEIT 583
             T+  L+ G           KL+   + A I+
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 462



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 181/402 (45%), Gaps = 38/402 (9%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGW------------ 253
           PD + +G L+D L K   + +A  LF + +     PS   +TSL++G             
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 254 -----------------------CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
                                  CK G L EA  ++ +M + G  PD+V YN ++ G  +
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            G++ +A  L  EM R GC PN  S+  +I  LC+  K+++A + F EME      D  +
Sbjct: 128 SGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWS 187

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  LI G  K+ K++  Y++   M+  GI P+ +TY  ++        L+E +EL   MR
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             GC P    +N++I   CK G++ EA  +   M      P   ++  ++ G      + 
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A    ++MV R     P   T   L++ L +A +++ A++V   +V+ G   +V  +  
Sbjct: 308 DARHLLEDMVKR--QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +H     G  + A     DM+   + P   T+  L+ GL K
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 160/320 (50%), Gaps = 2/320 (0%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M +    PD   Y  L+ G A+ GK+ DA +L +++   G  P+  +YT LI  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
            ++A   F +M R GC    VTY  +I   CK   ++   +++  MI+ G +P+ +TY  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           +M    K   +EE + L  EM ++GC P+  ++N +I   C+  ++ +A  V++EMEA  
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P + S+ +++ G    G L EA + F+ M+  G+   P   T   +++ +  A  ++ 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGI--TPSAVTYNVVIHGMCLAYTLDE 238

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A +++  + +KGC  + + + I I +    G + EA      M D   +P   T++ L+ 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 569 GLKKLYNRQIAAEITEKVRK 588
           GL  +     A  + E + K
Sbjct: 299 GLCSIARVDDARHLLEDMVK 318



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 179/398 (44%), Gaps = 35/398 (8%)

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M ER   P    +  L+ G  K GKL +A+ +  ++  +G  P  V Y +L+ G      
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             DA EL  +M R+GC P+  +Y V+I A C+   +EEA     +M   G   DVVTY T
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           ++ G CKS +++    + + M + G  PN+ ++  I+L   ++ ++++  ++  EM    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD  +Y ++I    K G+L EA  ++  M  + ++P   ++ V++HG      L EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 474 EYFKEMVGRG----------LLSA-----------------------PQYGTLKALLNSL 500
           E FK M  +G          L+ A                       P   T   L++ L
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
               +V+ A+ +   +V + C+  V      IH L   G +KEA      M+ +   P  
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 561 DTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITF 597
            T+  L+ G  +    + A E +++ V +  A   +T+
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 76/209 (36%), Gaps = 42/209 (20%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y AL+  L K  +      +  +M+     P L T   +  L+  F SA  
Sbjct: 393 PNVV----TYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT---YTALILGFCSAGQ 445

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V   +++  EM   G  PD  V+G L   LCK+     A ++  E RE  +         
Sbjct: 446 VDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSE------- 498

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
              W  E                       VY   + G    GKM  A   +++M R G 
Sbjct: 499 --AWGDE-----------------------VYRFAVDGLLDAGKMEMALGFVRDMVRGGQ 533

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVE 338
            P       L+  LC+  +  EA RA +E
Sbjct: 534 LPAPERCASLVAGLCKSGQGGEA-RAVLE 561


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 196/398 (49%), Gaps = 3/398 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+R F +A  ++  +    EM + GC P+   +  ++DA CK   + EA KL   M 
Sbjct: 206 YNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P+L  +  ++ G C+EG++ E   +L +M    + PD V +N L++GY  +G   
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A  L  EM + G  PN  +YT LI ++C+   +  A     +M   G   +  TYTTLI
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GF +   + + Y+I+  M++ G  P  +TY  ++  H     +E+   L+ EM + G +
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV +Y+ +I   C+  EL++A  +  EM A  +SP   ++  ++ G   Q  L E C+ 
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F+EM+  GL   P   T  +L+N+      ++ A  +   ++ KG   ++  + + I+  
Sbjct: 506 FQEMLSLGL--PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
                 KEA    L ++  + +P   T+  L+     L
Sbjct: 564 NKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNL 601



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 217/455 (47%), Gaps = 23/455 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y  +I +  K+RK G  + L+  M  +   P LI+  V +  + R      
Sbjct: 236 PNVV----TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ--- 288

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +K+  E+L+EM K    PD   F  L++  C   +  +A  L  EM +    P++  +T+
Sbjct: 289 MKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTT 348

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   CK G L  A   L QM+D G  P+   Y  L+ G++Q G +  A++++KEM   G
Sbjct: 349 LINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENG 408

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P   +Y  LI   C + +ME+A+    EM   G   DVV+Y+T+ISGFC+++++++ +
Sbjct: 409 FTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAF 468

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++   M+ +GI P+  TY  ++    K+  L E  +L  EM  +G  PD   Y  +I   
Sbjct: 469 QLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAY 528

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF-KEMVGRGLLSA 487
           C  G+L +A+ + +EM     SP   ++ V+++GF  Q    EA     K +    + + 
Sbjct: 529 CIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNE 588

Query: 488 PQYGTLK------------ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             Y TL             AL+        +  A  V   ++ KG +LN   + + IH  
Sbjct: 589 ITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGH 648

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              G++++A +   +M+ +   P   T   L + L
Sbjct: 649 SKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSL 683



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 195/399 (48%), Gaps = 4/399 (1%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN-SSVKEAAKL 231
           ++ VF ++++  A   ++ KA+ +++    YG  P    +  +LDA+ +   SVK A  +
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190

Query: 232 FDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           F EM E    P++  +  L+ G+C  G L        +M+  G  P++V YN ++  Y +
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCK 250

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           + K+ +AF+LL+ M  KG +PN  SY V+I  LCR  +M+E +    EM +     D VT
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVT 310

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           + TLI+G+C      +   +   M++ G+ PN +TY  ++ +  K   L   +E + +MR
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             G  P+   Y  +I    + G LK+A  +  EM     +P   ++  +++G    G + 
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRME 430

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A    +EM+ RG +  P   +   +++   R Q++E A  +   +V KG   +V  ++ 
Sbjct: 431 DASGLLQEMIERGFI--PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSS 488

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            I  L     + E C    +M+   + P   T+  L+  
Sbjct: 489 LIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINA 527



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 176/391 (45%), Gaps = 56/391 (14%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           YV     +  LI     +  F     L  EM K    P ++T   +  L+     A  + 
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVT---YTTLINSMCKAGNLN 360

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+E LD+M   G  P+   +  L+D   +   +K+A ++  EM E  F P++  + +L+
Sbjct: 361 RAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALI 420

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C  G++ +A  +L +M + GF PD+V Y+ ++SG+ +  ++  AF+L  EM  KG  
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y+ LIQ LC+  ++ E    F EM   G   D VTYT+LI+ +C    +D+   +
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-------VSN--- 420
            D MIQ+G  P+ +TY  ++    K+   +E   L+ ++     VP+       + N   
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN 600

Query: 421 ----------------------------------------YNVVIRLACKLGELKEAVNV 440
                                                   YNV+I    K+G +++A N+
Sbjct: 601 LEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNL 660

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
           + EM  +  +P + + + +      +G  +E
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSLYHEGKEVE 691



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 21/259 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L K R+ G V  L +EM      P  +T   +  L+  +     + KA+ + D
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT---YTSLINAYCIEGDLDKALRLHD 542

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS--------------- 242
           EM + G  PD   +  L++   K S  KEA +L  ++  E   P+               
Sbjct: 543 EMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE 602

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            +   +L+ G+C +G + EA  VL  M   G++ +  VYN ++ G++++G +  A+ L K
Sbjct: 603 FKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYK 662

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   G  P++ +   L ++L    K  E N+      +S    +      LI    K  
Sbjct: 663 EMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEG 722

Query: 363 KIDRCYEILDSMIQRGILP 381
            +D  + +L  M   G+LP
Sbjct: 723 NMDAVFNVLKDMALSGLLP 741


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 211/422 (50%), Gaps = 13/422 (3%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D +K+++ +    +    +E AL   GV L   L   ++ +      + +R++MWA  Q 
Sbjct: 235 DADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQD 294

Query: 133 NYVHSYDVYRALIKSLS----KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
            Y H    Y  +I  LS    K+++F  V  +++ M++   + +  EV ++++R++    
Sbjct: 295 CYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKH 354

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
           +         +  +   +P+      LLDALCK S V++A  +F  ++ + KP    +  
Sbjct: 355 LAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNI 414

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L +GWC+         VL +M + G  PD   YN  +  + + G +T+A EL + MR KG
Sbjct: 415 LFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKG 474

Query: 309 C---DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
                P A +Y ++I AL + ++ EE  +   +M  SG   DV TY  +I G C + K++
Sbjct: 475 STMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVE 534

Query: 366 RCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
             Y+ L+ M  +G  P+ +TY   L ++  ++K EE    + L G M + GCVP V  +N
Sbjct: 535 EAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEE---ALGLYGRMIEAGCVPSVHTFN 591

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I +  ++GE   A   W+EM+    +  TD++ VM+ G      + +AC    E+V +
Sbjct: 592 MLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNK 651

Query: 483 GL 484
           G+
Sbjct: 652 GI 653



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 7/274 (2%)

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K KP   T   + IL   +   R   + + VL+EM + G  PD F +   +D+ CK   V
Sbjct: 404 KVKPDANT---YNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMV 460

Query: 226 KEAAKLFDEMRER----FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            EA +LF+ MR +      P+ + +  ++    +  +  E   ++  M ++G  PD+  Y
Sbjct: 461 TEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTY 520

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             ++ G    GK+ +A++ L+EM  KG  P+  +Y   +  LC  +K EEA   +  M  
Sbjct: 521 KQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIE 580

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           +GC   V T+  LIS F +  + D  +E    M +RG   +  TY  ++       ++E+
Sbjct: 581 AGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMED 640

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
              L+ E+   G       ++  +     +G+L+
Sbjct: 641 ACFLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQ 674



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 10/299 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA  + + ++ K   P+AN+Y +L    CR+       R   EM   G   D  TY T I
Sbjct: 393 DAQAMFRRVKNK-VKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAI 451

Query: 356 SGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
             FCK+  +    E+ + M  +G     P   TY  ++LA  + +  EEC +L+ +M   
Sbjct: 452 DSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINS 511

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G +PDVS Y  VI   C  G+++EA     EM      P     +V  + FL   C  + 
Sbjct: 512 GVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPD----IVTYNCFLDVLCENKK 567

Query: 473 CEYFKEMVGRGLLSA--PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            E    + GR + +   P   T   L++      + + A + W  +  +GC  +   + +
Sbjct: 568 SEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCV 627

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
            I  LF+   +++AC    ++++  +      F   +  L  + + Q   +++E +RK 
Sbjct: 628 MIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKF 686


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 228/460 (49%), Gaps = 24/460 (5%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKF-GA--VWALMEEMRKEKPQLITTEVFVILMRRF 184
           A   PN V     Y  L+ +  +  +  GA  V +LM E    KP L+T   F  ++   
Sbjct: 181 AGCAPNAV----TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT---FNSMVNGL 233

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
             A  ++ A +V DEM + G  PD   +  LL   CK   + E+  +F EM +R   P +
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             FTSL++  CK G L +A  ++ QM++ G   + V +  L+ G+ + G + DA   ++E
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR+ G  P+   Y  LI   C++ +M+ A     EME    + DVVTY+T+ISG+CK   
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D  +++   M+++G+LP+ +TY  ++    +++ L +  EL   M ++G  PD   Y  
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE-----YFKE 478
           +I   CK G +++A+++ +EM    + P   ++ V+++G        EA       Y ++
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 479 MVGRGL--------LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            V   +         S  ++ ++ ALL        ++ A  V+  ++ +  +L+   ++I
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 593

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            IH     G+V++A S+   M+ +   P   +   L+RGL
Sbjct: 594 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 204/378 (53%), Gaps = 4/378 (1%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCK 255
           L  M ++G  P+ + +  L+ ALC    ++EA  +  +MR     P+   + +L+  +C+
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 256 EGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            G+L  A+ V+  M++ G  +P++V +N++++G  + G+M  A ++  EM R+G  P+  
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV 259

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           SY  L+   C++  + E+   F EM + G   DVVT+T+LI   CK+  +++   ++  M
Sbjct: 260 SYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQM 319

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            +RG+  N++T+  ++    KK  L++ +  + EMRK G  P V  YN +I   CKLG +
Sbjct: 320 RERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRM 379

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
             A  +  EMEA  + P   ++  ++ G+   G L  A +  ++M+ +G+L  P   T  
Sbjct: 380 DLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL--PDAITYS 437

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           +L+  L   +++  A +++  ++  G + + + +T  I      G+V++A S   +M+  
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 555 DVMPQPDTFAKLMRGLKK 572
            V+P   T++ L+ GL K
Sbjct: 498 GVLPDVVTYSVLINGLSK 515



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 193/393 (49%), Gaps = 56/393 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    K+       A+  EM  R   P ++T   F  L+     A  +++A+ ++ 
Sbjct: 261 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVT---FTSLIHATCKAGNLEQAVALVA 317

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           +M + G   +E  F  L+D  CK   + +A    +EMR+   +PS+  + +L+ G+CK G
Sbjct: 318 QMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A+ ++ +M+    +PD+V Y+ ++SGY ++G +  AF+L ++M +KG  P+A +Y+
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 437

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+ LC  +++ +A   F  M + G + D  TYTTLI G CK   +++   + D MI++
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 378 GILPNQLTY------------------LHIMLAHE----------------KKEELEECV 403
           G+LP+ +TY                  L   L HE                 K E +  V
Sbjct: 498 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVV 557

Query: 404 ELM------GEMRKIGCV----------PDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            L+      G M++   V           D S Y+++I   C+ G +++A++   +M  +
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
             SP + S + +V G   +G ++EA    ++++
Sbjct: 618 GFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 159/356 (44%), Gaps = 39/356 (10%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G+ P +  YN +L   +    +  A   L  M R G  PN  +Y +L++ALC   ++EEA
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKID--------------------------- 365
                +M  +GC  + VTY TL++ FC++ ++D                           
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 366 ---------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
                       ++ D M++ G+ P+ ++Y  ++  + K   L E + +  EM + G VP
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           DV  +  +I   CK G L++AV +  +M    L     +F  ++ GF  +G L +A    
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           +EM   G+   P      AL+N   +  ++++A+++   +  K  + +V  ++  I    
Sbjct: 352 EEMRKCGI--QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             G++  A      M+   V+P   T++ L+RGL +      A E+ E + ++  +
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQ 465



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 21/261 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L + ++      L E M +   +P   T   +  L+        V+KA+ + D
Sbjct: 436 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT---YTTLIDGHCKEGNVEKALSLHD 492

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF------DEMRERFK----------PS 242
           EM + G  PD   +  L++ L K++  KEA +L       D + +  K            
Sbjct: 493 EMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAE 552

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            +   +LL G+C +G + EA  V   M D  ++ D  VY+ L+ G+ + G +  A    K
Sbjct: 553 FKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHK 612

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M R G  PN+ S   L++ L     + EA+ A  ++      AD      LI    K  
Sbjct: 613 QMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEG 672

Query: 363 KIDRCYEILDSMIQRGILPNQ 383
            +D   ++L  M + G+LP+ 
Sbjct: 673 NVDALIDVLCGMARDGLLPSS 693


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 242/494 (48%), Gaps = 12/494 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           ++ +  K  +F  V A++ EM K    P ++T  V V    R   A   + A+ ++D M 
Sbjct: 101 MVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDA---EAAMALVDSMV 157

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260
             G +P    +  +L  LC++    +A ++F EM +    P +R FT L+ G+C+ G++ 
Sbjct: 158 SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIE 217

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +  +M+  G +PD+V ++ L+  +A+ GKM  A   L+EMR  G  P+   YT++I
Sbjct: 218 EALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 277

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              CR   M +A R   EM   GC  DVVTY TL++G CK R++     +L+ M +RG+ 
Sbjct: 278 GGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVP 337

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  T+  ++  +  + +L++ ++L   M      PD+  YN +I   C+ G+L +A ++
Sbjct: 338 PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL 397

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           W++M +  + P   ++ +++     +G + +A  +  EM+ +G+L  P   T  +++   
Sbjct: 398 WDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL--PNIMTYNSIIKGY 455

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ 559
            R+  V   +     ++      ++  +   IH       + +A    L+MM+ + V P 
Sbjct: 456 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL-LNMMEKEKVQPD 514

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV--RKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
             T+  L+ G     N Q A  I EK+  + +  +R     M          ++A +  D
Sbjct: 515 VVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHD 574

Query: 618 GRKRRARQRRWGGG 631
              +R +++R   G
Sbjct: 575 EMLQRGKEKRRAAG 588



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 181/346 (52%), Gaps = 6/346 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI   ++  K     A + EMR     P  +   ++ +++  F  A ++  A+ V D
Sbjct: 238 FSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV---IYTMVIGGFCRAGLMSDALRVRD 294

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   GC PD   +  LL+ LCK   + +A  L +EMRER   P L  FT+L++G+C EG
Sbjct: 295 EMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 354

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL +A  +   M +    PDIV YN L+ G  + G +  A +L  +M  +   PN  +Y+
Sbjct: 355 KLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYS 414

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI + C   ++E+A     EM   G   +++TY ++I G+C+S  + +  + L  M+  
Sbjct: 415 ILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN 474

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + P+ +TY  ++  + K++++ +  +L+  M K    PDV  YN++I      G ++EA
Sbjct: 475 KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEA 534

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
             ++ +M A  + P   +++ M++G +  G   EA +   EM+ RG
Sbjct: 535 GWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 138/296 (46%), Gaps = 2/296 (0%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           E +    N ++  Y +  +      ++ EM ++   P+  ++ V++ A  R    E A  
Sbjct: 92  EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMA 151

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
               M   G +  +VTY +++ G C+S   D+ +E+   M   G+ P+  ++  ++    
Sbjct: 152 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 211

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           +  E+EE +++  EMR  G  PD+ +++ +I L  + G++  A+    EM    L P   
Sbjct: 212 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 271

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
            + +++ GF   G + +A     EMVG G L  P   T   LLN L + +++  A+ + +
Sbjct: 272 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCL--PDVVTYNTLLNGLCKERRLLDAEGLLN 329

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +  +G   ++  +T  IH     G + +A      M++  + P   T+  L+ G+
Sbjct: 330 EMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGM 385


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 224/453 (49%), Gaps = 10/453 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI    +         LME+M KE      T  +  L+        +++  ++L+EM
Sbjct: 165 YTSLIVGCCQTNALDEARKLMEKM-KESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEM 223

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            + G EPD F +  ++  LC++   +EA K+ ++M E +  P +  + SL+ G+CK  K+
Sbjct: 224 VEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKM 283

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA+ +L  M      P ++ Y  L+ G+++  ++ DA+ ++++M + G  P+  +Y  L
Sbjct: 284 DEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCL 343

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+  K+EEA+     M    C  DVVTY+ L++G CK  K+D    +L+ M++RG 
Sbjct: 344 LDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGC 403

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +T+  ++    K  +++E  +++  M+++ C PDV  Y+ +I   CK   +++A  
Sbjct: 404 QPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFA 463

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +        +SP   S+  M+ G    G + EA E    M  +G    P       ++  
Sbjct: 464 ILG------ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQG--CPPTSSHYALIIGG 515

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L   ++ + A  +   +  +GCE N+Y ++I I+ L     V++A +    M++   +P 
Sbjct: 516 LCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPD 575

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             T+  L+ G  K+     A +  + +R    E
Sbjct: 576 VATYTSLIDGFCKINKMDAAYQCFKTMRDSGCE 608



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 225/501 (44%), Gaps = 42/501 (8%)

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEV-- 176
           GY ++      P+   S   Y ALI   S+      V  +  EM  R+  P +IT     
Sbjct: 8   GYSFFRERFSDPSK-PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 177 ----------------------------FVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
                                       + IL+      + + +A ++LDEM +  C PD
Sbjct: 67  KAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPD 126

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
             V+ CL+  LCK   +  A  +   M ER   P +  +TSL+ G C+   L EA+ ++ 
Sbjct: 127 AAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLME 186

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +MK++G  PD V YN LL+G  +  ++ +  +LL+EM   G +P+  SY  ++  LC   
Sbjct: 187 KMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESG 246

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           K EEA +   +M    C  DVVTY +L+ GFCK  K+D    +L+ M+ R   P  +TY 
Sbjct: 247 KYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYT 306

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++    + + L +   +M +M K G  PD+  YN ++   CK G+L+EA  +   M   
Sbjct: 307 TLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEK 366

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
             +P   ++ ++V+G    G + +A    + M+ RG    P   T   +++   +A KV+
Sbjct: 367 DCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERG--CQPNLVTFNTMIDGFCKAGKVD 424

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
               V   +    C  +V  ++  I        +++A +         + P   +++ ++
Sbjct: 425 EGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI------LGISPDKASYSSML 478

Query: 568 RGLKKLYNRQIAAEITEKVRK 588
            GL      + A E+ + + K
Sbjct: 479 EGLCSTGKVEEAQEVMDLMTK 499



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/510 (25%), Positives = 238/510 (46%), Gaps = 33/510 (6%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           L++ L+ S V      T  ++  C        R  M   K+         Y AL+  L K
Sbjct: 150 LKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCK 209

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
             +   V  L+EEM +   +  T     ++     S +  ++A ++L++M +  C PD  
Sbjct: 210 QNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGK-YEEAGKILEKMIEKKCGPDVV 268

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
            +  L+D  CK S + EA +L ++M   R  P++  +T+L+ G+ +  +L +A  V+  M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM 328

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
             AG  PD+V YN LL G  + GK+ +A ELL+ M  K C P+  +Y++L+  LC++ K+
Sbjct: 329 FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKV 388

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           ++A      M   GC+ ++VT+ T+I GFCK+ K+D  +++L+ M +    P+ +TY  +
Sbjct: 389 DDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTL 448

Query: 390 MLAHEKKE-----------------------------ELEECVELMGEMRKIGCVPDVSN 420
           +  + K                               ++EE  E+M  M K GC P  S+
Sbjct: 449 IDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSH 508

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y ++I   C +    EA+ +   M      P   ++ ++++G      + +A      M+
Sbjct: 509 YALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVML 568

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            +G +  P   T  +L++   +  K++ A   +  +   GCE +  A+ I I     +G+
Sbjct: 569 EKGCV--PDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGN 626

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V++A      M++    P   T+  LMR L
Sbjct: 627 VEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 128/306 (41%), Gaps = 11/306 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           + +   +E       P+ ++Y  LI    R    +       EM       DV+T+ T++
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 356 SGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
             +C+   +DR          RG +   P   TY  ++    + + ++E  +L+ EM + 
Sbjct: 67  KAYCQIGDLDRALSHF-----RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK 121

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
            C PD + YN +I   CK+G++  A NV   M   S  P   ++  ++ G      L EA
Sbjct: 122 DCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEA 181

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            +  ++M   GL   P      ALLN L +  ++E    +   +V  G E + +++   +
Sbjct: 182 RKLMEKMKESGL--TPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVV 239

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAA 591
             L  +G  +EA      M++    P   T+  LM G  K+     A  + E  V +  A
Sbjct: 240 ACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCA 299

Query: 592 ERQITF 597
              IT+
Sbjct: 300 PTVITY 305


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 198/391 (50%), Gaps = 11/391 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A ++ +R+   +L+   V  +  ++      ++V +A ++  
Sbjct: 164 YGTLINGLCKV---GQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 220

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+   C    + +A  LF++M  E   P +  F+ L+ G+CKEG
Sbjct: 221 EMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEG 280

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EAK VL  M   G +PD+V Y +L+ GY  + ++  A  +   M + G   N  SY 
Sbjct: 281 RVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYN 340

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++K++EA   F EM       DVVTY +LI G CKS KI    +++D M  R
Sbjct: 341 IMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDR 400

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+  +++TY  I+ A  K  ++++ + L+ +M+  G  PD+  Y ++I   CK G LK+A
Sbjct: 401 GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDA 460

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            N++ ++     +    ++ VM+ GF       +A     +M   G +  P   T + ++
Sbjct: 461 QNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCI--PNAKTYEIII 518

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
            SL    + +MA+ +   ++ +G    ++ W
Sbjct: 519 LSLFEKDENDMAEKLLREMIARGL---LFGW 546



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/488 (23%), Positives = 231/488 (47%), Gaps = 15/488 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL K+  +    +L  EM        L+T   F IL+  F+       +  V  
Sbjct: 59  FGKILGSLVKINCYQTAISLHREMEFNGIASDLVT---FNILINCFSQLGHTHFSFSVFA 115

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            + K G EP+      L+  LC    + +A    D++    F  +   + +L+ G CK G
Sbjct: 116 NILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVG 175

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A  +L ++     +P++V+YN ++    ++  + +AF+L  EM  KG  P+  +Y+
Sbjct: 176 QTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYS 235

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C + K+ +A   F +M       DV T++ L+ GFCK  ++     +L  M+++
Sbjct: 236 ALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQ 295

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  +M  +   +++ +   +   M + G   +V +YN++I   CK+ ++ EA
Sbjct: 296 GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEA 355

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +N++ EM   ++ P   ++  ++ G    G +  A +   EM  RG+       T  ++L
Sbjct: 356 MNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGV--PHDKITYNSIL 413

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++L +  +V+ A  + + +  +G + ++Y +TI I  L   G +K+A +   D++     
Sbjct: 414 DALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYN 473

Query: 558 PQPDTFAKLMRGL--KKLYNRQIA----AEITEKVRKMAAERQITFKMYKRRGERDLKEK 611
               T+  +++G     L+++ +A     E    +        I   ++++  E D+ EK
Sbjct: 474 ITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKD-ENDMAEK 532

Query: 612 AKKQVDGR 619
             +++  R
Sbjct: 533 LLREMIAR 540



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 141/332 (42%), Gaps = 37/332 (11%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I  +  +L    ++     A  L +EM   G   +  ++ +LI    ++     +   
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG----------------- 378
           F  + + G E + +T TTLI G C   +I +     D ++  G                 
Sbjct: 114 FANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173

Query: 379 ------------------ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
                             + PN + Y  I+ +  K + + E  +L  EM   G  PDV  
Sbjct: 174 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 233

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y+ +I   C LG+L +A+ ++N+M +  ++P   +F ++V GF  +G + EA      M+
Sbjct: 234 YSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMM 293

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            +G+   P   T  +L++     ++V  AK +++ +   G   NV ++ I I+       
Sbjct: 294 KQGI--KPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKK 351

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           V EA +   +M   +++P   T+  L+ GL K
Sbjct: 352 VDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCK 383


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 211/422 (50%), Gaps = 13/422 (3%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D +K+++ +    +    +E AL   GV L   L   ++ +      + +R++MWA  Q 
Sbjct: 208 DADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQD 267

Query: 133 NYVHSYDVYRALIKSLS----KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
            Y H    Y  +I  LS    K+++F  V  +++ M++   + +  EV ++++R++    
Sbjct: 268 CYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKH 327

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
           +         +  +   +P+      LLDALCK S V++A  +F  ++ + KP    +  
Sbjct: 328 LAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNI 387

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L +GWC+         VL +M + G  PD   YN  +  + + G +T+A EL + MR KG
Sbjct: 388 LFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKG 447

Query: 309 C---DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
                P A +Y ++I AL + ++ EE  +   +M  SG   DV TY  +I G C + K++
Sbjct: 448 STMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVE 507

Query: 366 RCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
             Y+ L+ M  +G  P+ +TY   L ++  ++K EE    + L G M + GCVP V  +N
Sbjct: 508 EAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEE---ALGLYGRMIEAGCVPSVHTFN 564

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I +  ++GE   A   W+EM+    +  TD++ VM+ G      + +AC    E++ +
Sbjct: 565 MLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINK 624

Query: 483 GL 484
           G+
Sbjct: 625 GI 626



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 7/274 (2%)

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K KP   T   + IL   +   R   + + VL+EM + G  PD F +   +D+ CK   V
Sbjct: 377 KVKPDANT---YNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMV 433

Query: 226 KEAAKLFDEMRER----FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            EA +LF+ MR +      P+ + +  ++    +  +  E   ++  M ++G  PD+  Y
Sbjct: 434 TEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTY 493

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             ++ G    GK+ +A++ L+EM  KG  P+  +Y   +  LC  +K EEA   +  M  
Sbjct: 494 KQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIE 553

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           +GC   V T+  LIS F +  + D  +E    M +RG   +  TY  ++       ++E+
Sbjct: 554 AGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMED 613

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
              L+ E+   G       ++  +     +G+L+
Sbjct: 614 ACFLLDEVINKGIKLPYRKFDCFLMQLSMIGDLQ 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 10/299 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA  + + ++ K   P+AN+Y +L    CR+       R   EM   G   D  TY T I
Sbjct: 366 DAQAMFRRVKNK-VKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAI 424

Query: 356 SGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
             FCK+  +    E+ + M  +G     P   TY  ++LA  + +  EEC +L+ +M   
Sbjct: 425 DSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINS 484

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G +PDVS Y  VI   C  G+++EA     EM      P     +V  + FL   C  + 
Sbjct: 485 GVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPD----IVTYNCFLDVLCENKK 540

Query: 473 CEYFKEMVGRGLLSA--PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            E    + GR + +   P   T   L++      + + A + W  +  +GC  +   + +
Sbjct: 541 SEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCV 600

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
            I  LF+   +++AC    ++++  +      F   +  L  + + Q   +++E +RK 
Sbjct: 601 MIEGLFNCNKMEDACFLLDEVINKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKF 659


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 223/444 (50%), Gaps = 28/444 (6%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           LE AL  +G+     L + + +R   +  L +  + WA  +P +  S  ++ ++I SL K
Sbjct: 88  LESALDETGIEPSLQLVQALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVINSLCK 147

Query: 151 MRKFGAVWALM-EEMRK-EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP- 207
            R+F   W+L+ + +R  E   L++ + F++L+RR+A A MV++AI   +    Y  EP 
Sbjct: 148 AREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSY--EPV 205

Query: 208 -----DEFVFGCLLDALCKNSSVKEAAKLFDE----MRERFKPSLRHFTSLLYGWCKEGK 258
                +  +   LLDALCK   V+EA+   +     M   + PS+R F  LL GW +  K
Sbjct: 206 CKSASELKLLEVLLDALCKEGYVREASVYLERRRGMMDSNWVPSVRIFNILLNGWFRSRK 265

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L +A+ +  +MK    +P +V Y  L+ GY +M ++  A E+L+EM+    +     +  
Sbjct: 266 LKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFMVFNP 325

Query: 319 LIQALCRMEKMEEA----NRAFVEMERSGCEA--DVVTYTTLISGFCKSRKIDRCYEILD 372
           +I  L    ++ EA     R FV      CE+   +VTY +L+  FCK+  +    +IL 
Sbjct: 326 IIDGLGEAGRLSEALGMMERFFV------CESGPTIVTYNSLVKNFCKAGDLPGASKILK 379

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ RG+ P   TY H      K  + EE + L  ++ + G  PD   Y++++++ C+ G
Sbjct: 380 MMMTRGVEPTTSTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDG 439

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +L  A+ V  EM+   + P   +  +++H       L EA E F   V RG++  PQY T
Sbjct: 440 KLSLAIQVNKEMKNRGIDPDLLTTTMLMHLLCRLDMLEEAFEEFDNAVRRGII--PQYIT 497

Query: 493 LKALLNSLLRAQKVEMAKDVWSCI 516
            K + N L      +MAK + S +
Sbjct: 498 FKMIDNGLRSKGMTDMAKRLSSLM 521


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 204/433 (47%), Gaps = 41/433 (9%)

Query: 177 FVILMRRFASARMVKKAIE-VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           F  L+R   + +    A+  VL  MP+ GC PD F +  LL  LC     +EAA+L   M
Sbjct: 182 FTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMM 241

Query: 236 RE---RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV------------ 280
            E      P++  +T++++G+ KEG + +A  +  +M D G  P++V             
Sbjct: 242 AEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQ 301

Query: 281 -----------------------YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
                                  YN+L+ GY   G+ T+A  +LKEM R G  PN  +Y+
Sbjct: 302 AMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYS 361

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LC+     EA   F  M +SG + +  TY +L+ G+     +     + D M+Q 
Sbjct: 362 MLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQN 421

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P +  +   + A+ K   L+E      +M++ G +PD+  Y  VI   CK+G L +A
Sbjct: 422 GMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDA 481

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++ + +M    LSP   +F  ++HGF   G   +A E F EM+ RG+   P   T  +++
Sbjct: 482 MSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGI--PPNVNTFNSMI 539

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + L +  KV  A+ ++  +   G + NV ++   IH  F  G V E      DM+   + 
Sbjct: 540 DKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLK 599

Query: 558 PQPDTFAKLMRGL 570
           P   TF  L+ G+
Sbjct: 600 PTAVTFNTLLDGM 612



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 188/392 (47%), Gaps = 34/392 (8%)

Query: 118 GNLGYRYYMWA-----SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQ 170
           G++G  Y ++         PN V    V    I  L K++      A++++M  E   P 
Sbjct: 266 GDVGKAYTLFCKMLDHGIPPNVVTCNSV----IDGLCKVQAMDKAEAVLQQMIDEHIMPN 321

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
             T   +  L+  + S+    +A+ +L EM + G  P+   +  L+D LCK+    EA +
Sbjct: 322 CTT---YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEARE 378

Query: 231 LFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +F+ M +   KP+   + SLL+G+  EG LV+   V   M   G  P   V+N  +  Y 
Sbjct: 379 IFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYC 438

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G++ +A     +M+++G  P+  +YT +I  LC++ ++++A   F +M   G   D++
Sbjct: 439 KCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDII 498

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T+ TLI GF    K ++  E+   M+ RGI PN  T+  ++    K+ ++ E  +L   M
Sbjct: 499 TFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLM 558

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG-- 467
            + G  P+V +YN +I      GE+ E + + ++M    L P   +F  ++ G +  G  
Sbjct: 559 PRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLK 618

Query: 468 -------CLIEAC----------EYFKEMVGR 482
                   LI++C            F+EM+G+
Sbjct: 619 PDVVTCKTLIDSCCEDGRIEDILTLFREMLGK 650



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 153/420 (36%), Gaps = 94/420 (22%)

Query: 53  DDCKCNNTTDTHGSHNEFSH-DVEKIFRILKKF--HSRLPKLEL------------ALQH 97
           D+C  N  + T   H  F   DV K + +  K   H   P +              A+  
Sbjct: 246 DNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDK 305

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYY---MWA------------SKQPNYVHSYDVYR 142
           +  VL+  + E ++  C    +L + Y     W              ++PN V     Y 
Sbjct: 306 AEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVV----TYS 361

Query: 143 ALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            LI  L K         +   M +  +KP   T   +  L+  +A+   +     V D M
Sbjct: 362 MLIDCLCKSGLHAEAREIFNSMIQSGQKPNAST---YGSLLHGYATEGNLVDMNNVKDLM 418

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + G  P   VF   + A CK   + EA+  F++M+++ F P +  +T+++ G CK G+L
Sbjct: 419 VQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRL 478

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN----- 314
            +A     QM D G  PDI+ +N L+ G+A  GK   A EL  EM  +G  PN N     
Sbjct: 479 DDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSM 538

Query: 315 ------------------------------SYTVLIQALCRMEKMEEA------------ 332
                                         SY  +I       ++ E             
Sbjct: 539 IDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL 598

Query: 333 -------NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
                  N     M   G + DVVT  TLI   C+  +I+    +   M+ +    + +T
Sbjct: 599 KPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 658



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 113/245 (46%), Gaps = 12/245 (4%)

Query: 336 FVEMERSGCE---ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHI 389
           F  M R+G +    D+ T+  LIS  C +  ++  +  L  +I+ G+    +T+   L  
Sbjct: 129 FNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRT 188

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAA 447
           + A ++  +    V  +  M ++GC PDV +Y  +++  C   + +EA  + + M  +  
Sbjct: 189 LCAEKRTSDAMNIV--LRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGD 246

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
           +  P   S+  ++HGF  +G + +A   F +M+  G+   P   T  ++++ L + Q ++
Sbjct: 247 NCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGI--PPNVVTCNSVIDGLCKVQAMD 304

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A+ V   ++ +    N   +   IH   S+G   EA     +M      P   T++ L+
Sbjct: 305 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLI 364

Query: 568 RGLKK 572
             L K
Sbjct: 365 DCLCK 369



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 130/326 (39%), Gaps = 56/326 (17%)

Query: 297 AFELLKEMRRKGCD---PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           A  +   M R G     P+  ++ +LI   C    +     A  ++ ++G  A  VT+T 
Sbjct: 125 AVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTP 184

Query: 354 LISGFC-KSRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKK-EELEECVELMGE- 408
           L+   C + R  D    +L  M + G  P+  +Y  ++  L  EKK EE  E + +M E 
Sbjct: 185 LLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAED 244

Query: 409 ---------------------------------MRKIGCVPDVSNYNVVIRLACKLGELK 435
                                            M   G  P+V   N VI   CK+  + 
Sbjct: 245 GDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD 304

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  V  +M    + P   ++  ++HG+L  G   EA    KEM   G    P   T   
Sbjct: 305 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDG--QRPNVVTYSM 362

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA- 554
           L++ L ++     A+++++ ++  G + N   +   +H   + G++       +DM +  
Sbjct: 363 LIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNL-------VDMNNVK 415

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAA 580
           D+M Q       MR  + ++N +I A
Sbjct: 416 DLMVQNG-----MRPGRHVFNIEIYA 436



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEE--------CVELMGEMRKIGC---VPD 417
           ++ D ++QR   P  +  L+ +L    +  +           V +   M + G     PD
Sbjct: 85  DLFDELLQRA-RPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKVAPD 143

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY-F 476
           ++ + ++I   C  G L        ++    L     +F  ++     +    +A     
Sbjct: 144 IATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNIVL 203

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--CELNVYAWTIWIHS 534
           + M   G    P   +   LL  L   +K E A ++   +   G  C  NV ++T  IH 
Sbjct: 204 RRMPELG--CTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHG 261

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            F  G V +A +    M+D  + P   T   ++ GL K+
Sbjct: 262 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKV 300


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 203/414 (49%), Gaps = 5/414 (1%)

Query: 172 ITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           ++  VF   IL+R F  A  +  A+   D M K GC P+   +  L+D  CK   + +  
Sbjct: 201 VSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGF 260

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +L   M  +  +P+L  +  ++ G C+EG++ E  +VL +M   G+  D V YN L+ GY
Sbjct: 261 ELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGY 320

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            + G    A  +  EM R G  P+  +YT LI ++C+   M  A     +M   G   + 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNE 380

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TYTTL+ GF +   ++  Y +L  MI  G  P+ +TY  ++  H    ++ + + ++ +
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLED 440

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M++ G  PDV +Y+ V+   C+  ++ EA+ V  +M A  + P T ++  ++ GF  Q  
Sbjct: 441 MKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRR 500

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
             EAC+ F EM+  GL   P   T  AL+N+      ++ A  + + +V KG   +V  +
Sbjct: 501 TKEACDLFDEMLRVGL--PPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTY 558

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           ++ I+ L      +EA    L +   + +P   T+  L+     +  + + + I
Sbjct: 559 SVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI 612



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 211/437 (48%), Gaps = 39/437 (8%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKL 231
           T+ VF ++++ ++   ++ KA+ ++     +G  P    +  +LDA  ++  ++  A  +
Sbjct: 133 TSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192

Query: 232 FDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           F EM + +  P++  +  L+ G+C  G L  A     +M+  G  P++V YN L+ GY +
Sbjct: 193 FKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCK 252

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           + K+ D FELL+ M  KG +PN  SY V+I  LCR  +M+E +    EM + G   D VT
Sbjct: 253 LRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVT 312

Query: 351 YTTLISGF-----------------------------------CKSRKIDRCYEILDSMI 375
           Y TLI G+                                   CK+  ++R  E LD M 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMR 372

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            RG+ PN+ TY  ++    +K  + E   ++ EM   G  P V  YN +I   C  G++ 
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMV 432

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+ V  +M+   L+P   S+  ++ GF     + EA    ++MV +G+   P   T  +
Sbjct: 433 DAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGI--KPDTITYSS 490

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+      ++ + A D++  ++  G   + + +T  I++    G +++A     +M++  
Sbjct: 491 LIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKG 550

Query: 556 VMPQPDTFAKLMRGLKK 572
           V+P   T++ L+ GL K
Sbjct: 551 VLPDVVTYSVLINGLNK 567



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 214/445 (48%), Gaps = 59/445 (13%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN +     Y  +I  L +  +   +  ++ EM K    L     +  L++ +      
Sbjct: 272 EPNLIS----YNVVINGLCREGRMKEISFVLTEMNKRGYSLDEV-TYNTLIKGYCKEGNF 326

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A+ +  EM ++G  P    +  L+ ++CK  ++  A +  D+MR R   P+ R +T+L
Sbjct: 327 HQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTL 386

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+ ++G + EA  VL +M D GF P +V YN L++G+   GKM DA  +L++M+ KG 
Sbjct: 387 VDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGL 446

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  SY+ ++   CR   ++EA R   +M   G + D +TY++LI GFC+ R+     +
Sbjct: 447 TPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI---- 425
           + D M++ G+ P++ TY  ++ A+  + +L++ ++L  EM + G +PDV  Y+V+I    
Sbjct: 507 LFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 426 ---------RLACKL-------------------------------------GELKEAVN 439
                    RL  KL                                     G + EA  
Sbjct: 567 KQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ 626

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V+  M   +  P   ++ VM+HG    G + +A   +KEMV  G L      T+ AL+ +
Sbjct: 627 VFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFL--LHTVTVIALVKT 684

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELN 524
           L +  KV     V + ++ + CEL+
Sbjct: 685 LHKEGKVNELNSVIANVL-RSCELS 708



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 21/333 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI       K     A++E+M+++   P +++   +  ++  F  +  V +A+ V  
Sbjct: 418 YNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVS---YSTVLSGFCRSYDVDEALRVKR 474

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M   G +PD   +  L+   C+    KEA  LFDEM R    P    +T+L+  +C EG
Sbjct: 475 KMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEG 534

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A  +  +M + G  PD+V Y+ L++G  +  +  +A  LL ++  +   P+  +Y 
Sbjct: 535 DLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYH 594

Query: 318 VLIQ---------------ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            LI+                 C    M EA++ F  M     + D   Y  +I G C+  
Sbjct: 595 TLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGG 654

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            I + Y +   M++ G L + +T + ++    K+ ++ E   ++  + +   + +     
Sbjct: 655 DIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAK 714

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           V++ +  + G +   ++V  EM      P   S
Sbjct: 715 VLVEINHREGNMDVVLDVLAEMAKDGFLPNGKS 747


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 206/411 (50%), Gaps = 27/411 (6%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS- 149
           +E AL   GV L   L   +++R      L +R++ WA++Q NY H   VY  +I  LS 
Sbjct: 103 MEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSS 162

Query: 150 ---KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS------ARMVKKAIEVLDEM 200
              K+++F  V  L++ M++     +  EV   ++R +         +  KK   ++   
Sbjct: 163 TRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIVKRQ 222

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
           P+         F  LLDALCK S V++A  L  +++++ KP    +  + +GWC+     
Sbjct: 223 PEIN------AFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVRNPG 276

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC---DPNANSYT 317
               VL +M + GF+PD   YN  ++ + + G + +A EL + MR KG     P A +Y 
Sbjct: 277 RGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYA 336

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I AL    +MEE  +    M +SGC  DV TY  +I G C + K+   Y  L+ M ++
Sbjct: 337 IMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKK 396

Query: 378 GILPNQLTY---LHIMLAHEKKEE-LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           G  P+ +TY   L ++  ++  ++ L  C      M ++GC+P V  YN++I +  ++ +
Sbjct: 397 GYPPDIVTYNCFLKVLCDNKMSDDALRHC----DRMIEVGCLPSVQTYNMLISMFFEMND 452

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
              A  +W EM+    +   DS+ +M+ G  G   + +AC   +E+V +G+
Sbjct: 453 HNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGM 503


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 213/465 (45%), Gaps = 37/465 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L+ S+++M+ +  V +L ++M     P    T    IL+  F     +  A  VL +
Sbjct: 57  FSKLLTSITRMKHYSTVLSLYKQMDSFGIPH--NTYTLNILINSFCHLNRLGFAFSVLGD 114

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGK 258
           + K G +P    F  L+  LC    + EA +LFD+M  E F+P +  + +L+ G CK G 
Sbjct: 115 ILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGN 174

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A   L  M+     P +VVY+ ++    +  ++T+A  L  +M  KG  PN  +Y+ 
Sbjct: 175 TSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSS 234

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC +   +EA R F  M       D +T+ TL+   CK   + + + ++D MIQ  
Sbjct: 235 LIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSD 294

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+ +TY  +M  H  + E+ + V +   M + GCVP V +Y  +I   CK+  + +A+
Sbjct: 295 LKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAM 354

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS------------ 486
            ++ EM    L P T ++  ++HG    G L +A   F EMV  G +             
Sbjct: 355 GLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYL 414

Query: 487 ---------------------APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
                                 P       +++ + RA ++E A+D++S + +KG   +V
Sbjct: 415 CKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDV 474

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +TI I+ L   G + EA     +M +    P   T+  + RG 
Sbjct: 475 RTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGF 519



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 168/363 (46%), Gaps = 6/363 (1%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMR 182
           ++ + +Q N   +  VY  +I SL K R+     +L  +M  +   P   T   +  L+ 
Sbjct: 181 FLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFT---YSSLIH 237

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKP 241
                   K+AI +   M      PD+  F  L+DALCK   V +A  + D M +   KP
Sbjct: 238 GLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKP 297

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
            +  + SL+ G C   ++ +   V   M   G  P ++ Y  L++GY ++  M  A  L 
Sbjct: 298 DVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLF 357

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           +EM ++G  P+  +Y  LI  LC + ++ +A   F EM   G   D+VTY  L    CK+
Sbjct: 358 EEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKN 417

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            ++     +L  +    + P+   Y  +M    +  ELE   +L  ++   G  PDV  Y
Sbjct: 418 HRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTY 477

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            ++I   C+ G L EA  ++ EM+    SP   ++ ++  GFL     + A + F+EM+ 
Sbjct: 478 TIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLS 537

Query: 482 RGL 484
           RG 
Sbjct: 538 RGF 540



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 6/323 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI  L  +  +     L   M  RK  P  +T   F  L+       MV KA  V+D
Sbjct: 232 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT---FNTLVDALCKEGMVVKAHYVVD 288

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M +   +PD   +  L+D  C  S + +   +FD M R+   PS+  +T+L+ G+CK  
Sbjct: 289 VMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQ 348

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  +  +M   G  PD V YN L+ G   +G++ DA  L  EM   G  P+  +Y 
Sbjct: 349 IMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYR 408

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L   LC+  ++ EA      +E +  + D+  Y+ ++ G C++ +++   ++   +  +
Sbjct: 409 ILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSK 468

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+  TY  ++    ++  L E  +L GEM + GC P+   YN++ R   +  E   A
Sbjct: 469 GLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRA 528

Query: 438 VNVWNEMEAASLSPGTDSFVVMV 460
           + ++ EM +   S    +  ++V
Sbjct: 529 IQLFQEMLSRGFSIDVSTTTLLV 551



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 182/415 (43%), Gaps = 39/415 (9%)

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           +L   M + +P     + F  L+      +     + +  +M  +G   + +    L+++
Sbjct: 40  SLFNRMLRMRPPPSIVD-FSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINS 98

Query: 219 LCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            C  + +  A + L D ++  ++PS   FT+L+ G C EGK+ EA  +  +M   GF+PD
Sbjct: 99  FCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPD 158

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y  L++G  ++G  + A   L+ M ++ C P    Y+ +I +LC+  ++ EA   F 
Sbjct: 159 VLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFS 218

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           +M   G   +  TY++LI G C          +  +MI R I+P+QLT+  ++ A  K+ 
Sbjct: 219 DMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEG 278

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
            + +   ++  M +    PDV  YN ++   C   E+ + VNV++ M      P   S+ 
Sbjct: 279 MVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYT 338

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            +++G+     + +A   F+EM  +GL+                                
Sbjct: 339 TLINGYCKIQIMDKAMGLFEEMSQQGLIP------------------------------- 367

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                 +   +   IH L   G +++A +   +M+    +P   T+  L   L K
Sbjct: 368 ------DTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCK 416



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 120/275 (43%), Gaps = 4/275 (1%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA  L   M R    P+   ++ L+ ++ RM+        + +M+  G   +  T   LI
Sbjct: 37  DALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILI 96

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           + FC   ++   + +L  +++ G  P+  T+  ++     + ++ E ++L  +M   G  
Sbjct: 97  NSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQ 156

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  Y  +I   CK+G    A+     ME  +  P    +  ++        L EA   
Sbjct: 157 PDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSL 216

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F +M+ +G+  +P   T  +L++ L      + A  ++  ++ +    +   +   + +L
Sbjct: 217 FSDMLAKGI--SPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDAL 274

Query: 536 FSNGHVKEACSYCLD-MMDADVMPQPDTFAKLMRG 569
              G V +A  Y +D M+ +D+ P   T+  LM G
Sbjct: 275 CKEGMVVKA-HYVVDVMIQSDLKPDVVTYNSLMDG 308



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILM---RRFASARMVKKAIE 195
           Y  LI  L  + +     AL  EM    + P L+T  +    +    R A A ++ K IE
Sbjct: 372 YNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIE 431

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
                     +PD  ++  ++D +C+   ++ A  LF ++  +   P +R +T ++ G C
Sbjct: 432 ------GTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLC 485

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           ++G L EA  +  +M + G  P+   YN +  G+ +  +   A +L +EM  +G   + +
Sbjct: 486 QQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVS 545

Query: 315 SYTVLIQAL 323
           + T+L++ L
Sbjct: 546 TTTLLVEML 554



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 2/207 (0%)

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           ID    + + M++    P+ + +  ++ +  + +     + L  +M   G   +    N+
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   C L  L  A +V  ++      P T +F  ++ G   +G + EA + F +M G G
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T   L+N L +      A      +  + C   V  ++  I SL  +  + E
Sbjct: 155 F--QPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTE 212

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL 570
           A S   DM+   + P   T++ L+ GL
Sbjct: 213 ALSLFSDMLAKGISPNNFTYSSLIHGL 239


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 228/460 (49%), Gaps = 24/460 (5%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKF-GA--VWALMEEMRKEKPQLITTEVFVILMRRF 184
           A   PN V     Y  L+ +  +  +  GA  V +LM E    KP L+T   F  ++   
Sbjct: 181 AGCAPNAV----TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT---FNSMVNGL 233

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
             A  ++ A +V DEM + G  PD   +  LL   CK   + E+  +F EM +R   P +
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             FTSL++  CK G L +A  ++ QM++ G   + V +  L+ G+ + G + DA   ++E
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR+ G  P+   Y  LI   C++ +M+ A     EME    + DVVTY+T+ISG+CK   
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D  +++   M+++G+LP+ +TY  ++    +++ L +  EL   M ++G  PD   Y  
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE-----YFKE 478
           +I   CK G +++A+++ +EM    + P   ++ V+++G        EA       Y ++
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 479 MVGRGL--------LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            V   +         S  ++ ++ ALL        ++ A  V+  ++ +  +L+   ++I
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 593

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            IH     G+V++A S+   M+ +   P   +   L+RGL
Sbjct: 594 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 204/378 (53%), Gaps = 4/378 (1%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCK 255
           L  M ++G  P+ + +  L+ ALC    ++EA  +  +MR     P+   + +L+  +C+
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 256 EGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            G+L  A+ V+  M++ G  +P++V +N++++G  + G+M  A ++  EM R+G  P+  
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV 259

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           SY  L+   C++  + E+   F EM + G   DVVT+T+LI   CK+  +++   ++  M
Sbjct: 260 SYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQM 319

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            +RG+  N++T+  ++    KK  L++ +  + EMRK G  P V  YN +I   CKLG +
Sbjct: 320 RERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRM 379

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
             A  +  EMEA  + P   ++  ++ G+   G L  A +  ++M+ +G+L  P   T  
Sbjct: 380 DLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL--PDAITYS 437

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           +L+  L   +++  A +++  ++  G + + + +T  I      G+V++A S   +M+  
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 555 DVMPQPDTFAKLMRGLKK 572
            V+P   T++ L+ GL K
Sbjct: 498 GVLPDVVTYSVLINGLSK 515



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 193/393 (49%), Gaps = 56/393 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    K+       A+  EM  R   P ++T   F  L+     A  +++A+ ++ 
Sbjct: 261 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVT---FTSLIHATCKAGNLEQAVALVA 317

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           +M + G   +E  F  L+D  CK   + +A    +EMR+   +PS+  + +L+ G+CK G
Sbjct: 318 QMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A+ ++ +M+    +PD+V Y+ ++SGY ++G +  AF+L ++M +KG  P+A +Y+
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 437

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+ LC  +++ +A   F  M + G + D  TYTTLI G CK   +++   + D MI++
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 378 GILPNQLTY------------------LHIMLAHE----------------KKEELEECV 403
           G+LP+ +TY                  L   L HE                 K E +  V
Sbjct: 498 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVV 557

Query: 404 ELM------GEMRKIGCV----------PDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            L+      G M++   V           D S Y+++I   C+ G +++A++   +M  +
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
             SP + S + +V G   +G ++EA    ++++
Sbjct: 618 GFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 159/356 (44%), Gaps = 39/356 (10%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G+ P +  YN +L   +    +  A   L  M R G  PN  +Y +L++ALC   ++EEA
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKID--------------------------- 365
                +M  +GC  + VTY TL++ FC++ ++D                           
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 366 ---------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
                       ++ D M++ G+ P+ ++Y  ++  + K   L E + +  EM + G VP
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           DV  +  +I   CK G L++AV +  +M    L     +F  ++ GF  +G L +A    
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           +EM   G+   P      AL+N   +  ++++A+++   +  K  + +V  ++  I    
Sbjct: 352 EEMRKCGI--QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             G++  A      M+   V+P   T++ L+RGL +      A E+ E + ++  +
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQ 465


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 212/441 (48%), Gaps = 20/441 (4%)

Query: 100 VVLRPGLTERVIN--RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           V+++ GL  R +    CG  G          +  PN +     +  +IK++ K+   G V
Sbjct: 160 VIIQEGLFHRALEFYECGVGGK--------TNISPNVLS----FNLVIKAMCKL---GLV 204

Query: 158 WALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
              +E  R+   Q    +VF    LM        + +A+ +LDEM   GC P    F  L
Sbjct: 205 DRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVL 264

Query: 216 LDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++ LCK   +    KL D M  +   P+   + +++ G C +GKL +A  +L +M  +  
Sbjct: 265 INGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKC 324

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            P+ V Y  L++G  + G+  D   LL  +  +G   N  +Y+ LI  L + EK EEA  
Sbjct: 325 VPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMG 384

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            + +M   GC+ ++V Y+ LI G C+  K+D   EIL  M+ +G  PN  TY  ++    
Sbjct: 385 LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFF 444

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K    ++ + +  EM K  CVP+   Y+V+I   C+ G+L+EA+ +W  M    L P   
Sbjct: 445 KTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVV 504

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  M+HG    G +    + F EM+ +   S P   T   LL +L +   +  A D+ +
Sbjct: 505 AYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLN 564

Query: 515 CIVTKGCELNVYAWTIWIHSL 535
            ++ +GC  ++    I++++L
Sbjct: 565 SMLDRGCNPDLITCNIFLNAL 585



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 212/467 (45%), Gaps = 16/467 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           AS+  +Y      + +LI++ +    FG ++ + + M++E+   I    F+++ R +  A
Sbjct: 70  ASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKN-FILVFRAYGKA 128

Query: 188 RMVKKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD---EMRERFKPSL 243
            + +KAIE+   M  ++ C      F  +L+ + +      A + ++     +    P++
Sbjct: 129 HLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 188

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F  ++   CK G +  A  V  +M     EPD+  Y  L+ G  +  ++ +A  LL E
Sbjct: 189 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 248

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M+ +GC P++ ++ VLI  LC+   M    +    M   GC  + VTY T+I+G C   K
Sbjct: 249 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 308

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D+   +LD M+    +PN +TY  ++    K+    + V L+  + + G   +   Y+ 
Sbjct: 309 LDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 368

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I    K  + +EA+ +W +M      P    +  ++ G   +G L EA E   EMV +G
Sbjct: 369 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 428

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T  +L+    +    + A  VW  +    C  N   +++ IH L  +G ++E
Sbjct: 429 --CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 486

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIAAE 581
           A      M+   + P    ++ ++ GL          KL+N  +  E
Sbjct: 487 AMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQE 533



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 26/265 (9%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V    VY ALI  L +  K      ++ EM  +   P   T   +  L++ F    
Sbjct: 395 QPNIV----VYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFT---YSSLIKGFFKTG 447

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             +KAI V  EM K  C P+E  +  L+  LC++  ++EA  ++  M  R  +P +  ++
Sbjct: 448 NSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYS 507

Query: 248 SLLYGWCKEGKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           S+++G C  G +     +  +M  +++  +PD+V YN LL    +   ++ A +LL  M 
Sbjct: 508 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSML 567

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +GC+P+  +  + + AL       +  R F++               L+    K ++I 
Sbjct: 568 DRGCNPDLITCNIFLNALREKLNPPQDGREFLD--------------ELVVRLHKRQRIV 613

Query: 366 RCYEILDSMIQRGILPNQLTYLHIM 390
              +I++ M+Q+ + PN  T+  I+
Sbjct: 614 GAAKIIEVMLQKFLPPNASTWERII 638


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 214/469 (45%), Gaps = 38/469 (8%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           +S QPN V    +Y ALI  L K         L  ++  E+  L+    +  L+    S 
Sbjct: 189 SSVQPNLV----MYSALIDGLCKDGFVSDALGLCSQI-GERGILLDAVTYNSLIDGCCSV 243

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHF 246
              ++  ++L +M +   +PD++ F  L+DALCK   + EA  +   M +R  KP +  +
Sbjct: 244 GRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L+ G+C    + EA+ +  +M   G EPD++ YN L+ GY +   + +A  L KE+  
Sbjct: 304 NALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN 363

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K   P   SY  LI  LC   ++    +   EM  S    DVVTY  LI   CK  +I  
Sbjct: 364 KNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILE 423

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +L  M+++G+ PN +TY  +M  +  +  +    ++   M K G  PD+ NYNV+I 
Sbjct: 424 ALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLIN 483

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG--- 483
             CK   + EA+ ++ EM   +L P   S+  ++ G    G +    E   EM   G   
Sbjct: 484 GYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSP 543

Query: 484 -------LLSA----------------------PQYGTLKALLNSLLRAQKVEMAKDVWS 514
                  LL A                      P + T  A++++L + +K++MA+D   
Sbjct: 544 DVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALK 603

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            ++  GC  NV  +TI I++L  +G   EA      M D D  P   TF
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITF 652



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 3/347 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI    K +       L +E+   K  + T   +  L+    ++  +    ++LDEM
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKEL-CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
                 PD   +  L+DALCK   + EA   L   M++  KP++  + +++ G+C    +
Sbjct: 397 HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             AK +  +M  +G EPDI+ YN L++GY +   + +A  L KEMR K   P+  SY  L
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC + ++        EM  SG   DV+TY  L+  FCK++  D+   +   +++ GI
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GI 575

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+  T   I+    K E+L+   + +  +   GC P+V  Y ++I   CK G   EA+ 
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + ++ME     P   +F +++   L +    +A +  +EM+ RGL++
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVN 682



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 208/479 (43%), Gaps = 57/479 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           V+  L+ ++ +M  +    +L  +++ +   P + T   F IL+  +        A  +L
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIAT---FTILINCYFHQSHTAFAFSLL 113

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEA----------AKLFDEMRERFKPSLRHFT 247
             + K G +P+   F  +++  C N  + +A            LFD+           + 
Sbjct: 114 ATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFT---------YG 164

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G  K G++  A ++L +M+ +  +P++V+Y+ L+ G  + G ++DA  L  ++  +
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G   +A +Y  LI   C + + +E  +   +M R   + D  T+  LI   CK  +I   
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L  M +RG  P+ +TY  +M  +  +E + E  EL   M K G  PDV NYNV+I  
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG---- 483
            CK   + EA+ ++ E+   +L P   S+  ++ G    G +    +   EM G      
Sbjct: 345 YCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 484 ------LLSA-----------------------PQYGTLKALLNSLLRAQKVEMAKDVWS 514
                 L+ A                       P   T  A+++       V +AKD+++
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            +V  G E ++  + + I+       V EA     +M   +++P   ++  L+ GL  L
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 150/352 (42%), Gaps = 3/352 (0%)

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRH-FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C+  +V +A   F+ M   F P     F  LL    + G    A  +  Q++  G  P I
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             +  L++ Y        AF LL  + + G  PN  ++  +I   C    + +A      
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           +   G   D  TY TLI+G  K+ +I     +L  M +  + PN + Y  ++    K   
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           + + + L  ++ + G + D   YN +I   C +G  +E   +  +M   ++ P   +F +
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++     +G ++EA      M  RG    P   T  AL+      + V  A+++++ +V 
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRG--EKPDIVTYNALMEGYCSRENVHEARELFNRMVK 328

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +G E +V  + + I        V EA     ++ + +++P   ++  L+ GL
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGL 380


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 225/447 (50%), Gaps = 10/447 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           ++ +  K  +F  V A++ EM K    P ++T  V V    R   A   + A+ ++D M 
Sbjct: 162 MVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDA---EAAMALVDSMV 218

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260
             G +P    +  +L  LC++    +A ++F EM +    P +R FT L+ G+C+ G++ 
Sbjct: 219 SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIE 278

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +  +M+  G +PD+V ++ L+  +A+ GKM  A   L+EMR  G  P+   YT++I
Sbjct: 279 EALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 338

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              CR   M +A R   EM   GC  DVVTY TL++G CK R++     +L+ M +RG+ 
Sbjct: 339 GGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVP 398

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  T+  ++  +  + +L++ ++L   M      PD+  YN +I   C+ G+L +A ++
Sbjct: 399 PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL 458

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           W++M +  + P   ++ +++     +G + +A  +  EM+ +G+L  P   T  +++   
Sbjct: 459 WDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL--PNIMTYNSIIKGY 516

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ 559
            R+  V   +     ++      ++  +   IH       + +A    L+MM+ + V P 
Sbjct: 517 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL-LNMMEKEKVQPD 575

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             T+  L+ G     N Q A  I EK+
Sbjct: 576 VVTYNMLINGFSVHGNVQEAGWIFEKM 602



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 199/420 (47%), Gaps = 4/420 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +++K L +   +   W + +EM  +         F IL+  F     +++A+++  EM
Sbjct: 229 YNSVLKGLCRSGMWDKAWEVFKEM-DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 287

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKL 259
              G +PD   F CL+    +   +  A     EMR     P    +T ++ G+C+ G +
Sbjct: 288 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLM 347

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  V  +M   G  PD+V YN LL+G  +  ++ DA  LL EMR +G  P+  ++T L
Sbjct: 348 SDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTL 407

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C   K+++A + F  M       D+VTY TLI G C+   +D+  ++ D M  R I
Sbjct: 408 IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 467

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +TY  ++ +H +K ++E+    + EM   G +P++  YN +I+  C+ G + +   
Sbjct: 468 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 527

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
              +M    +SP   ++  ++HG++ +  + +A +    M    +   P   T   L+N 
Sbjct: 528 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV--QPDVVTYNMLING 585

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
                 V+ A  ++  +  KG E + Y +   I+   + G+ KEA     +M+     P 
Sbjct: 586 FSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 138/296 (46%), Gaps = 2/296 (0%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           E +    N ++  Y +  +      ++ EM ++   P+  ++ V++ A  R    E A  
Sbjct: 153 EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMA 212

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
               M   G +  +VTY +++ G C+S   D+ +E+   M   G+ P+  ++  ++    
Sbjct: 213 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 272

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           +  E+EE +++  EMR  G  PD+ +++ +I L  + G++  A+    EM    L P   
Sbjct: 273 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 332

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
            + +++ GF   G + +A     EMVG G L  P   T   LLN L + +++  A+ + +
Sbjct: 333 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCL--PDVVTYNTLLNGLCKERRLLDAEGLLN 390

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +  +G   ++  +T  IH     G + +A      M++  + P   T+  L+ G+
Sbjct: 391 EMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGM 446


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 209/407 (51%), Gaps = 8/407 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K + F    A+ ++M     KP +   + +  L+  + S    K+ + +L+
Sbjct: 241 YTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNI---DTYNCLIHGYLSIGKWKEVVRMLE 297

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G +P+   +G LL+ LCKN   +EA   FD M  +  KPS+  +  +L+G+  +G
Sbjct: 298 EMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKG 357

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L E   +L  M   G  P+  ++N   S YA+ G +  A ++  +MR++G  P+A SY 
Sbjct: 358 ALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYG 417

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI ALC++ ++++A   F +M   G   D+V +++L+ G C   K ++  E+   M+  
Sbjct: 418 ALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNV 477

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI PN + +  I+    K+  + E   L+  +  +G  PDV +YN +I   C  G + EA
Sbjct: 478 GIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEA 537

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M +  L P + S+  ++HG+   G +  A  +F++M+  G+   P   T   +L
Sbjct: 538 SKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGI--TPGVVTYNTIL 595

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + L + ++   AK+++  ++  G + ++Y + I ++ L  +  V EA
Sbjct: 596 HGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEA 642



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 174/374 (46%), Gaps = 3/374 (0%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            +F I    +A   ++ KA+++ ++M + G  PD   +G L+DALCK   V +A   F++
Sbjct: 379 HIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQ 438

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  E   P +  F+SL+YG C   K  + + +  +M + G  P+IV +N +L    + G+
Sbjct: 439 MINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGR 498

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +   L+  +   G  P+  SY  LI   C    ++EA++    M   G + D  +Y T
Sbjct: 499 VMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNT 558

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+CK+ +ID  Y     M+  GI P  +TY  I+    + +   E  EL   M   G
Sbjct: 559 LLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 618

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
              D+  YN+++   CK   + EA+ ++  + +  L     +F +M+   L  G   +A 
Sbjct: 619 TKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAM 678

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           + F  +   GL+      T + ++ +L+    +E    ++S +   G   N       + 
Sbjct: 679 DLFAAIPANGLVQ--NVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVR 736

Query: 534 SLFSNGHVKEACSY 547
            L   G +  A +Y
Sbjct: 737 RLLHRGDISRAGAY 750



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 194/434 (44%), Gaps = 6/434 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V   L+  L   ++ G    ++ +   E   +  T  + IL++   + +  ++A+E+L  
Sbjct: 131 VINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHM 190

Query: 200 MPK---YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           M     + C P+   +  +++       V +   LF EM +R   P +  +T+++ G CK
Sbjct: 191 MADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCK 250

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
                 A+ V  QM D G +P+I  YN L+ GY  +GK  +   +L+EM   G  PN  +
Sbjct: 251 AQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCT 310

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  L+  LC+  +  EA   F  M   G +  V TY  ++ G+     +   +++L+ M+
Sbjct: 311 YGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMV 370

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             GI PN   +     A+ K   +++ +++  +MR+ G  PD  +Y  +I   CKLG + 
Sbjct: 371 ANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVD 430

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A   +N+M    ++P    F  +V+G        +  E F EM+  G+   P       
Sbjct: 431 DAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGI--HPNIVFFNT 488

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +L +L +  +V   + +   I   G   +V ++   I      G + EA      M+   
Sbjct: 489 ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 548

Query: 556 VMPQPDTFAKLMRG 569
           + P   ++  L+ G
Sbjct: 549 LKPDSFSYNTLLHG 562



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 188/443 (42%), Gaps = 52/443 (11%)

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE-------AAK 230
           VI  R  + +  +  A+++ DE+  +        F  LL A+ ++S  +           
Sbjct: 18  VIADRARSGSLGLGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVS 77

Query: 231 LFDEMRE----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           LF+ M      +  P+   ++ L+  +C+ G L         +   G+  D +V N LL+
Sbjct: 78  LFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLN 137

Query: 287 GYAQMGKMTDAFE-LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA------------- 332
           G     ++ +A + LL+ M   GC P+  SY +L++ LC  ++ EEA             
Sbjct: 138 GLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVW 197

Query: 333 -------------------------NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
                                       F+EM   G   DVVTYTT+I G CK++  DR 
Sbjct: 198 SCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRA 257

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   MI  G+ PN  TY  ++  +    + +E V ++ EM   G  P+   Y  ++  
Sbjct: 258 EAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNY 317

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G  +EA   ++ M    + P   ++ +M+HG+  +G L E  +    MV  G+  +
Sbjct: 318 LCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGI--S 375

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P +       ++  +   ++ A D+++ +  +G   +  ++   I +L   G V +A   
Sbjct: 376 PNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVK 435

Query: 548 CLDMMDADVMPQPDTFAKLMRGL 570
              M++  V P    F+ L+ GL
Sbjct: 436 FNQMINEGVTPDIVVFSSLVYGL 458



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 178/411 (43%), Gaps = 44/411 (10%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P +I+   +  L+     A  + +A ++L+ M   G +PD F +  LL   CK   +  
Sbjct: 515 RPDVIS---YNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDS 571

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A   F +M      P +  + ++L+G  +  +  EAK + + M ++G + DI  YN +L+
Sbjct: 572 AYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILN 631

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  +   + +A ++ + +  KG   N  ++ ++I AL +  + E+A   F  +  +G   
Sbjct: 632 GLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQ 691

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ--LTYLHIMLAH----------- 393
           +VVTY  ++    +   ++    +  +M + G  PN   L  L   L H           
Sbjct: 692 NVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYL 751

Query: 394 EKKEELEECVELMGEMRKIGC------------------VPDVSNYNVVIRLACKLGELK 435
            K +E    VE       I                    + + +N + +I+   K   + 
Sbjct: 752 SKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK---KARRID 808

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG--TL 493
           +A +++ EM    L+P   ++  ++HG    G   EA E +  M+     S  Q    T 
Sbjct: 809 DAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMIN----SRTQMNIYTY 864

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +LN L ++  V+ A  ++  + +KG +LN+  + I I +L   G  ++A
Sbjct: 865 NIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDA 915



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 136/318 (42%), Gaps = 29/318 (9%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           + A+++   +P  G   +   +  +++ L +  S++E   LF  M +    P+ +   +L
Sbjct: 675 EDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 734

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA-------------------- 289
           +      G +  A   L ++ +  F  +    + L+S ++                    
Sbjct: 735 VRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNE 794

Query: 290 --------QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                   +  ++ DA+ L +EM  KG  P+  +Y  ++  L +  +  EA   ++ M  
Sbjct: 795 ANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMIN 854

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           S  + ++ TY  +++G CKS  +D  +++  S+  +G+  N +T+  ++ A  K    E+
Sbjct: 855 SRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKED 914

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            ++L   +   G VPDV  Y +V     + G L+E   ++  ME +     +     +V 
Sbjct: 915 AMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVR 974

Query: 462 GFLGQGCLIEACEYFKEM 479
             L +G +  A  Y  ++
Sbjct: 975 RLLQRGDISRAGAYLSKL 992



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 255 KEGKLVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           K+ + ++  Y L  +M   G  PD+V YN +L G  Q G+ ++A EL   M       N 
Sbjct: 802 KKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNI 861

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y +++  LC+   ++EA + F  +   G + +++T+  +I    K  + +   ++  +
Sbjct: 862 YTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAA 921

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           +   G++P+ +TY  +     ++  LEE   L   M K G   D    N ++R   + G+
Sbjct: 922 IPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGD 981

Query: 434 LKEAVNVWNEMEAASLS 450
           +  A    ++++  + S
Sbjct: 982 ISRAGAYLSKLDEKNFS 998



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/428 (19%), Positives = 167/428 (39%), Gaps = 33/428 (7%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            Y  ++  L + ++F     L   M     +      + I++     +  V +AI++   +
Sbjct: 591  YNTILHGLFQTKRFSEAKELYLNMINSGTKW-DIYTYNIILNGLCKSNCVDEAIKMFQNL 649

Query: 201  PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
               G + +   F  ++ AL K    ++A  LF  +       ++  +  ++    +EG L
Sbjct: 650  CSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSL 709

Query: 260  VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             E   +   M+  G  P+  + N L+      G ++ A   L ++  +     A++ ++L
Sbjct: 710  EEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSML 769

Query: 320  IQALCRME----------------------------KMEEANRAFVEMERSGCEADVVTY 351
            I      E                            ++++A   F EM   G   DVVTY
Sbjct: 770  ISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTY 829

Query: 352  TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             T++ G  ++ +     E+  SMI      N  TY  I+    K   ++E  ++   +  
Sbjct: 830  NTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCS 889

Query: 412  IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
             G   ++  +N++I    K G  ++A++++  + A  L P   ++ ++    + +G L E
Sbjct: 890  KGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEE 949

Query: 472  ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
                F  M   G  +      L AL+  LL+   +  A    S +  K   L   + T  
Sbjct: 950  FDGLFLTMEKSG--TPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEA-STTSE 1006

Query: 532  IHSLFSNG 539
            + SLFS G
Sbjct: 1007 LISLFSRG 1014


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 223/461 (48%), Gaps = 10/461 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+ +  K   +    AL++EMR +  +P ++T   + +L+    +   V +A+ +L
Sbjct: 288 TYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVT---YNVLINAMCNEGDVDEALNIL 344

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
             +P +GC+PD   +  +L +LC +   KE  +L  EM      P    F +++   C++
Sbjct: 345 SNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQ 404

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G +  A  V+  M + G   DIV Y+++L G   +G++ DA ELL  ++  GC P+  +Y
Sbjct: 405 GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 464

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T +++ LC  E+ E A     EM  S C  D VT+ T+++  C+   +DR   +++ M +
Sbjct: 465 TTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G  P+ +TY  I+     +  +++ +EL+ +++  GC PD+  +N +++  C +   ++
Sbjct: 525 NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWED 584

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +   M  ++  P   +F  ++     +G L +A E  K M   G +  P   T   +
Sbjct: 585 AEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCV--PNSSTYSIV 642

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +++LL+A K + A ++ S +     +L  Y     I +L   G ++EA      M+   +
Sbjct: 643 VDALLKAGKAQAALELLSGMTNGTPDLITY--NTVISNLTKAGKMEEALDLLRVMVSNGL 700

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
            P   T+  L  G+ +      A  +  +V+        TF
Sbjct: 701 CPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTF 741



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 183/410 (44%), Gaps = 3/410 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T  F  L+R       +  A+ V D+M   GC P    +  LLDA CK S  ++A  L D
Sbjct: 251 TFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLD 310

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EMR +  +P +  +  L+   C EG + EA  +L  +   G +PD V Y  +L       
Sbjct: 311 EMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSE 370

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  +  ELL EM    C P+  ++  ++ +LC+   ++ A      M   GC AD+VTY+
Sbjct: 371 RWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYS 430

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +++ G C   ++D   E+L  +   G  P+ + Y  ++      E+ E   ELM EM   
Sbjct: 431 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCS 490

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
            C PD   +N V+   C+ G +  A+ V  +M     SP   ++  ++ G   + C+ +A
Sbjct: 491 DCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDA 550

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            E   ++   G    P   T   LL  L    + E A+ + + ++   C  +   +   I
Sbjct: 551 MELLSDLQSCG--CKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVI 608

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            SL   G + +A      M +   +P   T++ ++  L K    Q A E+
Sbjct: 609 TSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALEL 658



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 179/378 (47%), Gaps = 13/378 (3%)

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEK 168
           + R  DA  L  R   +  K P+ +     Y  ++K L    ++     LM EM      
Sbjct: 439 VGRVDDAVELLSRLKSYGCK-PDTI----AYTTVLKGLCSTEQWERAEELMAEMLCSDCP 493

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P  +T   F  ++       +V +AI V+++M + GC PD   + C++D LC  S + +A
Sbjct: 494 PDEVT---FNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDA 550

Query: 229 AKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            +L  +++    KP +  F +LL G C   +  +A+ ++  M  +   PD + +N +++ 
Sbjct: 551 MELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITS 610

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             Q G +T A E LK M   GC PN+++Y++++ AL +  K + A      M       D
Sbjct: 611 LCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPD 668

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           ++TY T+IS   K+ K++   ++L  M+  G+ P+  TY  +     +++  +  V ++ 
Sbjct: 669 LITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLR 728

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            ++  G  PD + YN V+   C+      A++ +  M ++   P   ++V+++      G
Sbjct: 729 RVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGG 788

Query: 468 CLIEACEYFKEMVGRGLL 485
            L EA      +   G+L
Sbjct: 789 LLDEAKRLLASLCSLGVL 806



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 178/394 (45%), Gaps = 11/394 (2%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL++R  S   V  A  V   +   G       +  +++  C+   +++A +L + M   
Sbjct: 192 ILIKRLCSDGRVSDAERVFAAL---GPSATVVTYNTMVNGYCRAGRIEDARRLINGMP-- 246

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P    F  L+   C  G++ +A  V   M   G  P +V Y+ LL    +      A 
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAM 306

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            LL EMR KGC+P+  +Y VLI A+C    ++EA      +   GC+ D VTYT ++   
Sbjct: 307 ALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSL 366

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C S +     E+L  M      P+++T+  I+ +  ++  ++  +E++  M + GCV D+
Sbjct: 367 CGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADI 426

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y+ ++   C +G + +AV + + +++    P T ++  ++ G     C  E  E  +E
Sbjct: 427 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL----CSTEQWERAEE 482

Query: 479 MVGRGLLS--APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           ++   L S   P   T   ++ SL +   V+ A  V   +   GC  ++  +   I  L 
Sbjct: 483 LMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLC 542

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +   + +A     D+      P   TF  L++GL
Sbjct: 543 NESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGL 576



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 6/247 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            +  L+K L  + ++     LM  M +    P  +T   F  ++       ++ +AIE L
Sbjct: 568 TFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELT---FNTVITSLCQKGLLTQAIETL 624

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
             M + GC P+   +  ++DAL K    + A +L   M     P L  + +++    K G
Sbjct: 625 KIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG-TPDLITYNTVISNLTKAG 683

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  +L  M   G  PD   Y +L  G  +      A  +L+ ++  G  P+   Y 
Sbjct: 684 KMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYN 743

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++   CR  + + A   F  M  SGC  D  TY  L+        +D    +L S+   
Sbjct: 744 DVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSL 803

Query: 378 GILPNQL 384
           G+L  +L
Sbjct: 804 GVLDKKL 810


>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 198/419 (47%), Gaps = 3/419 (0%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           +ELAL + G+ L   +   VINR    G     ++ WA KQP      D Y  +IK+L +
Sbjct: 78  IELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVKQPTIPKDVDTYNVIIKALGR 137

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
            +    V  ++++M  +       E   I+M  F  AR V KAIE+   + ++G + D  
Sbjct: 138 RKFIEFVVKVLKDMHIQGIS-PNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTE 196

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
               LL  LC+ S V  A   F+ M+     +   +  ++ GW K GK+ E +  L  M 
Sbjct: 197 SLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMV 256

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
             GF P+ + +++L+ G  + G++ DA E+   M   GC PNA  Y  LI         +
Sbjct: 257 ADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFD 316

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           E  + +  M  S C+ ++ TYT LI  F K+RK+    E+LD M+ RG++P        +
Sbjct: 317 ECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFI 376

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               +       + +  + RK+GC   +S Y +++    + G+    +N+W+EM+ +  S
Sbjct: 377 EPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYS 436

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
             T+ +  +++G    G L  A    +E + +G    P       L N LL + KVEMA
Sbjct: 437 SDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGF--CPSRLIRSKLNNKLLASNKVEMA 493



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY ALI +    R F         M      P +   + +  L+  F  AR V  A+E+L
Sbjct: 301 VYNALISNFISTRDFDECLKYYNFMVSSNCDPNM---DTYTKLIVAFLKARKVADALEML 357

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
           DEM   G  P        ++ LC+      A  ++ + R+   + SL  +  LL    + 
Sbjct: 358 DEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRF 417

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK      +  +M+++G+  D  VY  +++G   +G++  A  +++E   KG  P+    
Sbjct: 418 GKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGFCPSRLIR 477

Query: 317 TVLIQALCRMEKMEEANRAFVEME 340
           + L   L    K+E A + F++++
Sbjct: 478 SKLNNKLLASNKVEMAYKLFLKIK 501


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 228/460 (49%), Gaps = 24/460 (5%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKF-GA--VWALMEEMRKEKPQLITTEVFVILMRRF 184
           A   PN V     Y  L+ +  +  +  GA  V +LM E    KP L+T   F  ++   
Sbjct: 39  AGCAPNAV----TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT---FNSMVNGL 91

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
             A  ++ A +V DEM + G  PD   +  LL   CK   + E+  +F EM +R   P +
Sbjct: 92  CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 151

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             FTSL++  CK G L +A  ++ QM++ G   + V +  L+ G+ + G + DA   ++E
Sbjct: 152 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 211

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR+ G  P+   Y  LI   C++ +M+ A     EME    + DVVTY+T+ISG+CK   
Sbjct: 212 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 271

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D  +++   M+++G+LP+ +TY  ++    +++ L +  EL   M ++G  PD   Y  
Sbjct: 272 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 331

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE-----YFKE 478
           +I   CK G +++A+++ +EM    + P   ++ V+++G        EA       Y ++
Sbjct: 332 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 391

Query: 479 MVGRGL--------LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            V   +         S  ++ ++ ALL        ++ A  V+  ++ +  +L+   ++I
Sbjct: 392 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 451

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            IH     G+V++A S+   M+ +   P   +   L+RGL
Sbjct: 452 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 491



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 194/393 (49%), Gaps = 4/393 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+R   +   +++A+ V+ +M   GC P+   +  L+ A C+   +  A ++   MR
Sbjct: 13  YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 72

Query: 237 E--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           E    KP+L  F S++ G CK G++  A+ V  +M   G  PD+V YN LLSGY ++G +
Sbjct: 73  EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 132

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            ++  +  EM ++G  P+  ++T LI A C+   +E+A     +M   G   + VT+T L
Sbjct: 133 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 192

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I GFCK   +D     ++ M + GI P+ + Y  ++  + K   ++   EL+ EM     
Sbjct: 193 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 252

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PDV  Y+ +I   CK+G L  A  +  +M    + P   ++  ++ G   +  L +ACE
Sbjct: 253 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 312

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F+ M+  G+   P   T   L++   +   VE A  +   ++ KG   +V  +++ I+ 
Sbjct: 313 LFENMLQLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLING 370

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           L  +   KEA      +   D +P    +  LM
Sbjct: 371 LSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 203/375 (54%), Gaps = 4/375 (1%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGK 258
           M ++G  P+ + +  L+ ALC    ++EA  +  +MR     P+   + +L+  +C+ G+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 259 LVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           L  A+ V+  M++ G  +P++V +N++++G  + G+M  A ++  EM R+G  P+  SY 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C++  + E+   F EM + G   DVVT+T+LI   CK+  +++   ++  M +R
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+  N++T+  ++    KK  L++ +  + EMRK G  P V  YN +I   CKLG +  A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  EMEA  + P   ++  ++ G+   G L  A +  ++M+ +G+L  P   T  +L+
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL--PDAITYSSLI 298

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L   +++  A +++  ++  G + + + +T  I      G+V++A S   +M+   V+
Sbjct: 299 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 358

Query: 558 PQPDTFAKLMRGLKK 572
           P   T++ L+ GL K
Sbjct: 359 PDVVTYSVLINGLSK 373



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 193/393 (49%), Gaps = 56/393 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    K+       A+  EM  R   P ++T   F  L+     A  +++A+ ++ 
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVT---FTSLIHATCKAGNLEQAVALVA 175

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           +M + G   +E  F  L+D  CK   + +A    +EMR+   +PS+  + +L+ G+CK G
Sbjct: 176 QMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 235

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A+ ++ +M+    +PD+V Y+ ++SGY ++G +  AF+L ++M +KG  P+A +Y+
Sbjct: 236 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 295

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+ LC  +++ +A   F  M + G + D  TYTTLI G CK   +++   + D MI++
Sbjct: 296 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 355

Query: 378 GILPNQLTY------------------LHIMLAHE----------------KKEELEECV 403
           G+LP+ +TY                  L   L HE                 K E +  V
Sbjct: 356 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVV 415

Query: 404 ELM------GEMRKIGCV----------PDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            L+      G M++   V           D S Y+++I   C+ G +++A++   +M  +
Sbjct: 416 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 475

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
             SP + S + +V G   +G ++EA    ++++
Sbjct: 476 GFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 508



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 162/321 (50%), Gaps = 3/321 (0%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  P++  YN L+      G++ +A  ++ +MR  GC PNA +Y  L+ A CR  +++ A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 333 NRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
            R    M   G  + ++VT+ ++++G CK+ +++   ++ D M++ G+ P+ ++Y  ++ 
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            + K   L E + +  EM + G VPDV  +  +I   CK G L++AV +  +M    L  
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              +F  ++ GF  +G L +A    +EM   G+   P      AL+N   +  ++++A++
Sbjct: 185 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI--QPSVVCYNALINGYCKLGRMDLARE 242

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           +   +  K  + +V  ++  I      G++  A      M+   V+P   T++ L+RGL 
Sbjct: 243 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC 302

Query: 572 KLYNRQIAAEITEKVRKMAAE 592
           +      A E+ E + ++  +
Sbjct: 303 EEKRLNDACELFENMLQLGVQ 323



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 8/253 (3%)

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M++ G+ PN  TY  ++ A   +  LEE V ++G+MR  GC P+   YN ++   C+ GE
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 434 LKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           L  A  V + M E  +  P   +F  MV+G    G +  A + F EMV  GL  AP   +
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGL--APDVVS 118

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              LL+   +   +  +  V+S +  +G   +V  +T  IH+    G++++A +    M 
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT-----FKMYKRRGERD 607
           +  +     TF  L+ G  K      A    E++RK   +  +         Y + G  D
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 608 LKEKAKKQVDGRK 620
           L  +  ++++ ++
Sbjct: 239 LARELIREMEAKR 251



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 21/261 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L + ++      L E M +   +P   T   +  L+        V+KA+ + D
Sbjct: 294 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT---YTTLIDGHCKEGNVEKALSLHD 350

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF------DEMRERFK----------PS 242
           EM + G  PD   +  L++ L K++  KEA +L       D + +  K            
Sbjct: 351 EMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAE 410

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            +   +LL G+C +G + EA  V   M D  ++ D  VY+ L+ G+ + G +  A    K
Sbjct: 411 FKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHK 470

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M R G  PN+ S   L++ L     + EA+ A  ++      AD      LI    K  
Sbjct: 471 QMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEG 530

Query: 363 KIDRCYEILDSMIQRGILPNQ 383
            +D   ++L  M + G+LP+ 
Sbjct: 531 NVDALIDVLCGMARDGLLPSS 551


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 196/398 (49%), Gaps = 3/398 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+R F +A  ++  +    EM + GC P+   +  ++DA CK   + EA KL   M 
Sbjct: 206 YNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P+L  +  ++ G C+EG++ E   +L +M    + PD V +N L++GY  +G   
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A  L  EM + G  PN  +YT LI ++C+   +  A     +M   G   +  TYTTLI
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GF +   + + Y+I+  M++ G  P  +TY  ++  H     +E+   L+ EM + G +
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV +Y+ +I   C+  EL++A  +  EM A  +SP   ++  ++ G   Q  L E C+ 
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F+EM+  GL   P   T  +L+N+      ++ A  +   ++ KG   ++  + + I+  
Sbjct: 506 FQEMLSLGL--PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
                 KEA    L ++  + +P   T+  L+     L
Sbjct: 564 NKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNL 601



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 224/475 (47%), Gaps = 28/475 (5%)

Query: 117 AGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKP 169
           AGNL    + +   +     PN V     Y  +I +  K+RK G  + L+  M  +   P
Sbjct: 216 AGNLEMGLFFFGEMERNGCLPNVV----TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNP 271

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            LI+  V +  + R      +K+  E+L+EM K    PD   F  L++  C   +  +A 
Sbjct: 272 NLISYNVVINGLCREGQ---MKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQAL 328

Query: 230 KLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
            L  EM +    P++  +T+L+   CK G L  A   L QM+D G  P+   Y  L+ G+
Sbjct: 329 VLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGF 388

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
           +Q G +  A++++KEM   G  P   +Y  LI   C + +ME+A+    EM   G   DV
Sbjct: 389 SQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDV 448

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           V+Y+T+ISGFC+++++++ +++   M+ +GI P+  TY  ++    K+  L E  +L  E
Sbjct: 449 VSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQE 508

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M  +G  PD   Y  +I   C  G+L +A+ + +EM     SP   ++ V+++GF  Q  
Sbjct: 509 MLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSR 568

Query: 469 LIEACEYF-KEMVGRGLLSAPQYGTL------------KALLNSLLRAQKVEMAKDVWSC 515
             EA     K +    + +   Y TL             AL+        +  A  V   
Sbjct: 569 TKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLES 628

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++ KG +LN   + + IH     G++++A +   +M+ +   P   T   L + L
Sbjct: 629 MLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSL 683



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 196/399 (49%), Gaps = 4/399 (1%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN-SSVKEAAKL 231
           ++ VF ++++  A   ++ KA+ +++    YG  P    +  +LDA+ +   SVK A  +
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190

Query: 232 FDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           F EM E    P++  +  L+ G+C  G L    +   +M+  G  P++V YN ++  Y +
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCK 250

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           + K+ +AF+LL+ M  KG +PN  SY V+I  LCR  +M+E +    EM +     D VT
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVT 310

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           + TLI+G+C      +   +   M++ G+ PN +TY  ++ +  K   L   +E + +MR
Sbjct: 311 FNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             G  P+   Y  +I    + G LK+A  +  EM     +P   ++  +++G    G + 
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRME 430

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A    +EM+ RG +  P   +   +++   R Q++E A  +   +V KG   +V  ++ 
Sbjct: 431 DASGLLQEMIERGFI--PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSS 488

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            I  L     + E C    +M+   + P   T+  L+  
Sbjct: 489 LIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINA 527



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 176/391 (45%), Gaps = 56/391 (14%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           YV     +  LI     +  F     L  EM K    P ++T   +  L+     A  + 
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVT---YTTLINSMCKAGNLN 360

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+E LD+M   G  P+   +  L+D   +   +K+A ++  EM E  F P++  + +L+
Sbjct: 361 RAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALI 420

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C  G++ +A  +L +M + GF PD+V Y+ ++SG+ +  ++  AF+L  EM  KG  
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y+ LIQ LC+  ++ E    F EM   G   D VTYT+LI+ +C    +D+   +
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-------VSN--- 420
            D MIQ+G  P+ +TY  ++    K+   +E   L+ ++     VP+       + N   
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN 600

Query: 421 ----------------------------------------YNVVIRLACKLGELKEAVNV 440
                                                   YNV+I    K+G +++A N+
Sbjct: 601 LEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNL 660

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
           + EM  +  +P + + + +      +G  +E
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSLYHEGKEVE 691



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 21/259 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L K R+ G V  L +EM      P  +T   +  L+  +     + KA+ + D
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT---YTSLINAYCIEGDLDKALRLHD 542

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS--------------- 242
           EM + G  PD   +  L++   K S  KEA +L  ++  E   P+               
Sbjct: 543 EMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE 602

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            +   +L+ G+C +G + EA  VL  M   G++ +  VYN ++ G++++G +  A+ L K
Sbjct: 603 FKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYK 662

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   G  P++ +   L ++L    K  E N+      +S    +      LI    K  
Sbjct: 663 EMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEG 722

Query: 363 KIDRCYEILDSMIQRGILP 381
            +D  + +L  M   G+LP
Sbjct: 723 NMDAVFNVLKDMALSGLLP 741


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/498 (26%), Positives = 236/498 (47%), Gaps = 12/498 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  L+K+  +    G    L+  M+KE     T   +  L+  +A    +K+A  V++ 
Sbjct: 247 TYNTLLKAHCRKGMLGEARTLLARMKKEG-IAPTRATYNTLVSAYARLGWIKQATNVVEA 305

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEG 257
           M  +G EPD + +  L   LC+   V EA KL DEM       P +  + +L+    K  
Sbjct: 306 MTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQ 365

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A  +L +M+D G +  +V +N ++ G  + G++ +A   LK M  +G  P+  +Y 
Sbjct: 366 RSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYN 425

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI A C+   + +A     EM RSG + D  T  TL+   CK ++ +   E+L S  QR
Sbjct: 426 TLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQR 485

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G +P++++Y  +M A+ K+ + E  + L  EM K    P +  YN +I+  C +G+L EA
Sbjct: 486 GFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEA 545

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++  NE+    L P   ++ +++H +  +G L +A ++  +M+       P   T   L+
Sbjct: 546 IDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYF--KPDVVTCNTLM 603

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N L    K+E A  ++     KG +++V  +   I +L  +G V  A  +  DM    + 
Sbjct: 604 NGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQ 663

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
           P   T+  ++  L +       A  +E+ + M  +   + K+ +R     +K  A++   
Sbjct: 664 PDAFTYNVVLSALSE-------AGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKT 716

Query: 618 GRKRRARQRRWGGGRSKA 635
           G+    +     GG +K 
Sbjct: 717 GKDPEVKSDCESGGNAKG 734



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 202/445 (45%), Gaps = 9/445 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+ +  K ++      L+EEMR +  K  L+T  + V   +       +++A+  L
Sbjct: 353 TYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVV---KGLCREGQLEEALGRL 409

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
             M + G  PD   +  L+DA CK  +V +A  L DEM R   K       +LLY  CKE
Sbjct: 410 KMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKE 469

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +  EA+ +L      GF PD V Y  +++ Y +  K   A  L  EM ++   P+  +Y
Sbjct: 470 KRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTY 529

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI+ LC + K+ EA     E+ + G   D  TY  +I  +CK   +++ ++  + M++
Sbjct: 530 NTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLE 589

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
               P+ +T   +M       +LE+ ++L     + G   DV  YN +I+  CK G++  
Sbjct: 590 NYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDT 649

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKA 495
           A++ + +MEA  L P   ++ V++      G   EA     ++   G LS    Y  +K+
Sbjct: 650 ALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKS 709

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
               +   +  E+  D  S    KG +   Y  ++    L   G +KEA +   +MM   
Sbjct: 710 SAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSV--KELCVGGQLKEAKAVLDEMMQKG 767

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAA 580
           +     T+  LM GL K   RQ  A
Sbjct: 768 MSVDSSTYITLMEGLIKRQKRQTHA 792



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 170/362 (46%), Gaps = 8/362 (2%)

Query: 214 CLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
            +L AL ++ S    A L D  R     R  P+   F  L++  C +G L +A   L  M
Sbjct: 178 AVLSALARSPSTSPQASL-DVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM 236

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           +  G  PD+V YN LL  + + G + +A  LL  M+++G  P   +Y  L+ A  R+  +
Sbjct: 237 QGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWI 296

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLH 388
           ++A      M   G E D+ TY  L +G C++ K+D  +++ D M    I+ P+ +TY  
Sbjct: 297 KQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNT 356

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++ A  K +   + + L+ EMR  G    +  +N+V++  C+ G+L+EA+     M    
Sbjct: 357 LVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEG 416

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L+P   ++  ++  +     + +A     EMV  GL       TL  LL +L + ++ E 
Sbjct: 417 LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGL--KMDTFTLNTLLYNLCKEKRYEE 474

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A+++      +G   +  ++   + + F     + A     +M    + P   T+  L++
Sbjct: 475 AEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIK 534

Query: 569 GL 570
           GL
Sbjct: 535 GL 536



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 42/302 (13%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFA 185
           +  Q  +V     Y  ++ +  K  K      L +EM K K  P + T   +  L++   
Sbjct: 481 SPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYT---YNTLIKGLC 537

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
           +   + +AI+ L+E+ K G  PD+  +  ++ A CK   +++A +  ++M E  FKP + 
Sbjct: 538 TIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVV 597

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
              +L+ G C  GKL +A  +     + G + D++ YN L+    + G +  A     +M
Sbjct: 598 TCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADM 657

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG--------------------- 343
             +G  P+A +Y V++ AL    + EEA     +++ SG                     
Sbjct: 658 EARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTG 717

Query: 344 --------CEA-------DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
                   CE+       D  +Y   +   C   ++     +LD M+Q+G+  +  TY+ 
Sbjct: 718 KDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYIT 777

Query: 389 IM 390
           +M
Sbjct: 778 LM 779



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 43/279 (15%)

Query: 125 YMW--ASKQPNYVHSYDVYRALIKSLSKMRKFG-AVWALMEEMRKEKPQLITTEVFVILM 181
           Y+W   SK+     S   Y  LIK L  + K   A+  L E M+K      TT  + I++
Sbjct: 512 YLWDEMSKR-KLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTT--YNIII 568

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP 241
             +     ++KA +  ++M +   +PD      L++ LC +  +++A KLF+   E+ K 
Sbjct: 569 HAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKK 628

Query: 242 -SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
             +  + +L+   CK+G +  A +    M+  G +PD   YN +LS  ++ G+  +A  +
Sbjct: 629 VDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNM 688

Query: 301 LKEMRRKG-----------------------------CDPNAN-------SYTVLIQALC 324
           L ++   G                             C+   N       SY   ++ LC
Sbjct: 689 LHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELC 748

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
              +++EA     EM + G   D  TY TL+ G  K +K
Sbjct: 749 VGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQK 787


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 212/441 (48%), Gaps = 20/441 (4%)

Query: 100 VVLRPGLTERVIN--RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           V+++ GL  R +    CG  G          +  PN +     +  +IK++ K+   G V
Sbjct: 144 VIIQEGLFHRALEFYECGVGGK--------TNISPNVLS----FNLVIKAMCKL---GLV 188

Query: 158 WALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
              +E  R+   Q    +VF    LM        + +A+ +LDEM   GC P    F  L
Sbjct: 189 DRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVL 248

Query: 216 LDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++ LCK   +    KL D M  +   P+   + +++ G C +GKL +A  +L +M  +  
Sbjct: 249 INGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKC 308

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            P+ V Y  L++G  + G+  D   LL  +  +G   N  +Y+ LI  L + EK EEA  
Sbjct: 309 VPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMG 368

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            + +M   GC+ ++V Y+ LI G C+  K+D   EIL  M+ +G  PN  TY  ++    
Sbjct: 369 LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFF 428

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K    ++ + +  EM K  CVP+   Y+V+I   C+ G+L+EA+ +W  M    L P   
Sbjct: 429 KTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVV 488

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  M+HG    G +    + F EM+ +   S P   T   LL +L +   +  A D+ +
Sbjct: 489 AYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLN 548

Query: 515 CIVTKGCELNVYAWTIWIHSL 535
            ++ +GC  ++    I++++L
Sbjct: 549 SMLDRGCNPDLITCNIFLNAL 569



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 212/467 (45%), Gaps = 16/467 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           AS+  +Y      + +LI++ +    FG ++ + + M++E+   I    F+++ R +  A
Sbjct: 54  ASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKN-FILVFRAYGKA 112

Query: 188 RMVKKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD---EMRERFKPSL 243
            + +KAIE+   M  ++ C      F  +L+ + +      A + ++     +    P++
Sbjct: 113 HLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 172

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F  ++   CK G +  A  V  +M     EPD+  Y  L+ G  +  ++ +A  LL E
Sbjct: 173 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 232

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M+ +GC P++ ++ VLI  LC+   M    +    M   GC  + VTY T+I+G C   K
Sbjct: 233 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 292

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D+   +LD M+    +PN +TY  ++    K+    + V L+  + + G   +   Y+ 
Sbjct: 293 LDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 352

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I    K  + +EA+ +W +M      P    +  ++ G   +G L EA E   EMV +G
Sbjct: 353 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 412

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   T  +L+    +    + A  VW  +    C  N   +++ IH L  +G ++E
Sbjct: 413 --CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 470

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIAAE 581
           A      M+   + P    ++ ++ GL          KL+N  +  E
Sbjct: 471 AMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQE 517



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 26/265 (9%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V    VY ALI  L +  K      ++ EM  +   P   T   +  L++ F    
Sbjct: 379 QPNIV----VYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFT---YSSLIKGFFKTG 431

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             +KAI V  EM K  C P+E  +  L+  LC++  ++EA  ++  M  R  +P +  ++
Sbjct: 432 NSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYS 491

Query: 248 SLLYGWCKEGKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           S+++G C  G +     +  +M  +++  +PD+V YN LL    +   ++ A +LL  M 
Sbjct: 492 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSML 551

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +GC+P+  +  + + AL       +  R F++               L+    K ++I 
Sbjct: 552 DRGCNPDLITCNIFLNALREKLNPPQDGREFLD--------------ELVVRLHKRQRIV 597

Query: 366 RCYEILDSMIQRGILPNQLTYLHIM 390
              +I++ M+Q+ + PN  T+  I+
Sbjct: 598 GAAKIIEVMLQKFLPPNASTWERII 622


>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/547 (25%), Positives = 233/547 (42%), Gaps = 108/547 (19%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WAS  PN++H+   YRALI  L   R+F  V  +++EM           +FV ++R  
Sbjct: 114 FRWASNLPNFIHNQSTYRALIHKLCSFRRFETVKEVLDEMPSSIGSPPDESIFVTIVRGL 173

Query: 185 ASARMVKKAIEVLDEMPKYGCEP-----------------------------------DE 209
             ARMV++ I+VLD + K+G  P                                   D+
Sbjct: 174 GRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKEDIDLAREFYRKKMMMNGVSGDD 233

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFK----------------------------- 240
           + FG L+  LC  + + +A KL   M+ R K                             
Sbjct: 234 YTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNE 293

Query: 241 ---PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV----------------- 280
              PS   F  L+  +C+E  LV+A  +L +    GF PD+V                  
Sbjct: 294 MVEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEG 353

Query: 281 ------------------YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
                             YN L+ G+  +GK      +LK+M  KGC PN ++Y +L   
Sbjct: 354 VEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASG 413

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILP 381
            C    ++ A   F +M+  G   + +TY TLI G C   +++  ++IL+ M + RG   
Sbjct: 414 YCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAG 473

Query: 382 NQLT-YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
            +++ Y  I+    KK + EE +E + +M K+   P   + ++ I   C  G + +A  V
Sbjct: 474 GRISPYNSIIYGLYKKNQFEEALEFLTKMEKL--FPRAVDRSLRILGFCNEGSIGDAKRV 531

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           +++M      P    +V ++HGF   G + EA E   EMV  G    P   T  AL+++ 
Sbjct: 532 YDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYF--PTAPTFNALISAF 589

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
               KV  A  +   +V +GC  ++ +++  + +L + G  ++A    L M++ D++P  
Sbjct: 590 CGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDY 649

Query: 561 DTFAKLM 567
            T+  ++
Sbjct: 650 STWNSML 656



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 37/287 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK    + K      ++++M + K  L   + + IL   +  + M+  AI++ ++M
Sbjct: 372 YNTLIKGFCMLGKAKVGHRVLKDM-EIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDM 430

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----------------------- 237
              G   +   +  L+  LC    +++  K+ + M E                       
Sbjct: 431 KTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKN 490

Query: 238 RFKPSLRHFTSL-------------LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
           +F+ +L   T +             + G+C EG + +AK V  QM   G  P ++VY  L
Sbjct: 491 QFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCL 550

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G+ Q G + +AFEL+ EM   G  P A ++  LI A C   K+  A +   +M   GC
Sbjct: 551 IHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGC 610

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
             D+ +Y+ ++   C      +   +   M+++ ILP+  T+  ++L
Sbjct: 611 LPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSMLL 657


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 214/469 (45%), Gaps = 38/469 (8%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           +S QPN V    +Y ALI  L K         L  ++  E+  L+    +  L+    S 
Sbjct: 189 SSVQPNLV----MYSALIDGLCKDGFVSDALGLCSQI-GERGILLDAVTYNSLIDGCCSV 243

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHF 246
              ++  ++L +M +   +PD++ F  L+DALCK   + EA  +   M +R  KP +  +
Sbjct: 244 GRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L+ G+C    + EA+ +  +M   G EPD++ YN L+ GY +   + +A  L KE+  
Sbjct: 304 NALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN 363

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K   P   SY  LI  LC   ++    +   EM  S    DVVTY  LI   CK  +I  
Sbjct: 364 KNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILE 423

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +L  M+++G+ PN +TY  +M  +  +  +    ++   M K G  PD+ NYNV+I 
Sbjct: 424 ALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLIN 483

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG--- 483
             CK   + EA+ ++ EM   +L P   S+  ++ G    G +    E   EM   G   
Sbjct: 484 GYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSP 543

Query: 484 -------LLSA----------------------PQYGTLKALLNSLLRAQKVEMAKDVWS 514
                  LL A                      P + T  A++++L + +K++MA+D   
Sbjct: 544 DVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALK 603

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            ++  GC  NV  +TI I++L  +G   EA      M D D  P   TF
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITF 652



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 3/347 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI    K +       L +E+   K  + T   +  L+    ++  +    ++LDEM
Sbjct: 338 YNVLIDGYCKTKMVDEAMVLFKELCN-KNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
                 PD   +  L+DALCK   + EA   L   M++  KP++  + +++ G+C    +
Sbjct: 397 HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             AK +  +M  +G EPDI+ YN L++GY +   + +A  L KEMR K   P+  SY  L
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC + ++        EM  SG   DV+TY  L+  FCK++  D+   +   +++ GI
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GI 575

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+  T   I+    K E+L+   + +  +   GC P+V  Y ++I   CK G   EA+ 
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + ++ME     P   +F +++   L +    +A +  +EM+ RGL++
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVN 682



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 208/479 (43%), Gaps = 57/479 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           V+  L+ ++ +M  +    +L  +++ +   P + T   F IL+  +        A  +L
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIAT---FTILINCYFHQSHTAFAFSLL 113

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEA----------AKLFDEMRERFKPSLRHFT 247
             + K G +P+   F  +++  C N  + +A            LFD+           + 
Sbjct: 114 ATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFT---------YG 164

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G  K G++  A ++L +M+ +  +P++V+Y+ L+ G  + G ++DA  L  ++  +
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G   +A +Y  LI   C + + +E  +   +M R   + D  T+  LI   CK  +I   
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L  M +RG  P+ +TY  +M  +  +E + E  EL   M K G  PDV NYNV+I  
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG---- 483
            CK   + EA+ ++ E+   +L P   S+  ++ G    G +    +   EM G      
Sbjct: 345 YCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 484 ------LLSA-----------------------PQYGTLKALLNSLLRAQKVEMAKDVWS 514
                 L+ A                       P   T  A+++       V +AKD+++
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            +V  G E ++  + + I+       V EA     +M   +++P   ++  L+ GL  L
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 150/352 (42%), Gaps = 3/352 (0%)

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRH-FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C+  +V +A   F+ M   F P     F  LL    + G    A  +  Q++  G  P I
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             +  L++ Y        AF LL  + + G  PN  ++  +I   C    + +A      
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           +   G   D  TY TLI+G  K+ +I     +L  M +  + PN + Y  ++    K   
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           + + + L  ++ + G + D   YN +I   C +G  +E   +  +M   ++ P   +F +
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++     +G ++EA      M  RG    P   T  AL+      + V  A+++++ +V 
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRG--EKPDIVTYNALMEGYCSRENVHEARELFNRMVK 328

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +G E +V  + + I        V EA     ++ + +++P   ++  L+ GL
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGL 380


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 208/432 (48%), Gaps = 18/432 (4%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R   P ++ T     L+   A   ++  A+  L  + +    P+      +L  L +N  
Sbjct: 130 RSALPSVVDT-----LLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQ 184

Query: 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
                +LFD +     P++  F  ++   CKEG+LVEA+ + V+MK  G  PD+V YN+L
Sbjct: 185 GGLVRRLFDLLP---VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSL 241

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + GY + G + +  +L+ EMR+ GC  +  +Y  LI    +  +ME+A   F EM+R G 
Sbjct: 242 IDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGV 301

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
            A+VVT++T +  FCK   +    ++   M  RG++PN+ TY  ++    K   L++ + 
Sbjct: 302 VANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIV 361

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ EM   G VP+V  Y V++   CK G++ EA NV + ME   +      +  ++HG  
Sbjct: 362 LLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHF 421

Query: 465 GQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                  A +   +M  +G+ L    YGT   L+  L + QKV+ AK +   +   G   
Sbjct: 422 MNNNSERALDLLNQMKNKGMELDVSLYGT---LIWGLCKDQKVDEAKSLLHKMAGCGLRP 478

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           N   +T  + +LF  G   EA +    ++D+   P   T+  L+ GL K      A  I+
Sbjct: 479 NTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCK------AGSIS 532

Query: 584 EKVRKMAAERQI 595
           E +      R++
Sbjct: 533 EAISHFNKMREL 544



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 216/453 (47%), Gaps = 10/453 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K      V  L+ EMRK      ++T    +    +F   RM +KA     
Sbjct: 238 YNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFG--RM-EKAYSYFG 294

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G   +   F   +DA CK   V+EA KLF +MR R   P+   +TSL+ G CK G
Sbjct: 295 EMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 354

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  +L +M   G  P++V Y  ++ G  + GK+ +A  +L  M R G   N   YT
Sbjct: 355 RLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYT 414

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI         E A     +M+  G E DV  Y TLI G CK +K+D    +L  M   
Sbjct: 415 TLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGC 474

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN + Y  IM A  K  +  E V L+ ++   G  P+V  Y  +I   CK G + EA
Sbjct: 475 GLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEA 534

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKAL 496
           ++ +N+M    L P   ++  ++ GF   G L +A     EM+ +G+ L    Y    +L
Sbjct: 535 ISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVY---TSL 591

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++  ++   ++ A  + + ++  G +L++Y +T +I    +   ++EA     +M+   +
Sbjct: 592 IDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGI 651

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
            P    +  L+R  +KL N + A+ +  ++  +
Sbjct: 652 TPDKTVYNCLIRKYQKLGNMEEASSLQNEMESV 684


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 231/471 (49%), Gaps = 27/471 (5%)

Query: 119 NLGYRYYMWASKQPNY---VHSYD-VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
           +L  +++ WA +Q  Y   VHSY+ +   L+KS  + R       L+       P L+T 
Sbjct: 8   DLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHS--GCSPNLVT- 64

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
             F IL+R    A    +A+E L  + ++   PD ++F  L+  L K+ +  +A KLF+ 
Sbjct: 65  --FKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFEN 122

Query: 235 MR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE--PDIVVYNNLL-SGYAQ 290
           M   R  P +  + +++ G CK G L +A+ +L +M   G +  PDIV YN L+ +G  +
Sbjct: 123 MESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICK 182

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            G + +A E+L  M+  G  P+  +Y  +I ALC   ++ EA      M    C  D+VT
Sbjct: 183 DGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPDLVT 239

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           + TL+ GFCK+  + R  E+L+ M +  ILP+ +TY  ++    +  +++    L+ E+ 
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA---------ASLSPGTDSFVVMVH 461
           + G +PDV  Y  ++   CK GE++EA  +  EM A          ++ P   ++ +++ 
Sbjct: 300 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLG 359

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G +  G + +A     ++V RG +  P   T   L++ L +A +V  A D+   + + GC
Sbjct: 360 GLIKDGSISKAVSLISDLVARGYV--PDVVTYNTLIDGLCKANRVREACDLADEMASLGC 417

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             N       +  L   G V +A S  ++M      P    +  L+ GL K
Sbjct: 418 FPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCK 468



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 243/524 (46%), Gaps = 33/524 (6%)

Query: 62  DTHGSHNEFSHDVEKIFRIL----KKFHS-RLPKLELALQHSGVVLRPGL-TERVINRCG 115
           D  G  + + HDV     +L    K  H  R  K+   L HSG    P L T +++ R  
Sbjct: 15  DWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGC--SPNLVTFKILIRGN 72

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVY--RALIKSLSKMRKFGAVWALMEEMRKEK--PQL 171
                  R   +      +  + DVY    LI  L K         L E M   +  P +
Sbjct: 73  CKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDI 132

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDA-LCKNSSVKEA 228
            T   +  ++     +  ++KA E+L+EM + G    PD   +  L++A +CK+  V+EA
Sbjct: 133 FT---YNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEA 189

Query: 229 AKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++ D M+     P +  + S+++  C  G++VEA  +L  M      PD+V +N LL G
Sbjct: 190 LEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPDLVTFNTLLDG 246

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           + + G +  A E+L+EM R+   P+  +YT+L+  LCR+ +++ A     E+ R G   D
Sbjct: 247 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 306

Query: 348 VVTYTTLISGFCKSRKIDRCY---------EILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           V+ YT+L+ G CKS +I+  +         EIL  M+   ++P   TY  ++    K   
Sbjct: 307 VIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGS 366

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           + + V L+ ++   G VPDV  YN +I   CK   ++EA ++ +EM +    P   +   
Sbjct: 367 ISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGS 426

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           +V G    G + +A     EM  +    AP      +L++ L ++ +++ A  V   +  
Sbjct: 427 VVFGLCRVGRVDDAWSLVVEMSRK--RHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRG 484

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +G  L+ +A+   I S+   G V EA +   +M+    +P   T
Sbjct: 485 QGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGST 528


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 218/460 (47%), Gaps = 11/460 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +     A   L+  M    P       +  L+R       V  A+ +LD+M
Sbjct: 113 YNTLVAGYCRYGHLDAARRLIGSM----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDM 168

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + GC+P+   +  LL+A+CKNS  ++A  + DEMR +   P++  +  ++ G C+EG++
Sbjct: 169 LRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRV 228

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+ +L ++   G +PD V Y  LL G     +  D  EL  EM  K C PN  ++ +L
Sbjct: 229 DDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDML 288

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+  CR   +E A +   +M    C  +      +I+  CK  ++D  ++ L++M   G 
Sbjct: 289 IRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGC 348

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++    + E   +  EL+ EM +  C P+   +N  I + C+ G +++A+ 
Sbjct: 349 NPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIM 408

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M+    + G  ++  +V+GF  QG +  A E F+ M  +     P   T   LL  
Sbjct: 409 LIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK-----PNTITYTTLLTG 463

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L  A++++ A ++ + ++ + C  NV  + + ++     G + EA      MM+    P 
Sbjct: 464 LCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPN 523

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFK 598
             T+  L  G+ K  + + A E+    V K  +   ITF 
Sbjct: 524 LITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFS 563



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 207/487 (42%), Gaps = 85/487 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y  L++++ K   F    A+++EMR +   P ++T  V +  M R     
Sbjct: 174 QPNVV----TYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR-- 227

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--------FK 240
            V  A ++L+ +  YGC+PD   +  LL  LC +    +  +LF EM E+        F 
Sbjct: 228 -VDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFD 286

Query: 241 PSLRHF------------------------TSL----LYGWCKEGKLVEAKYVLVQMKDA 272
             +R F                        T+L    +   CK+G++ +A   L  M   
Sbjct: 287 MLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSY 346

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  PD + Y  +L G  +  +  DA ELLKEM R  C PN  ++   I  LC+   +E+A
Sbjct: 347 GCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQA 406

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                +M+  GC   VVTY  L++GFC    ID   E+  SM  +   PN +TY  ++  
Sbjct: 407 IMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTG 463

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
               E L+   EL+ EM    C P+V  +NV++   C+ G L EA+ +  +M     +P 
Sbjct: 464 LCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPN 523

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE----- 507
             ++  +  G        +A E    +V +G+  +P   T  +++  L +  +VE     
Sbjct: 524 LITYNTLFDGITKDCSSEDALELLHGLVSKGV--SPDVITFSSIIGILSKEDRVEEAIQM 581

Query: 508 --MAKDV----------------------------WSCIVTKGCELNVYAWTIWIHSLFS 537
             +A+D+                             + +V+ GC  N   + I I  L  
Sbjct: 582 FHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAR 641

Query: 538 NGHVKEA 544
            G +KEA
Sbjct: 642 EGLLKEA 648



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 178/381 (46%), Gaps = 6/381 (1%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R E P +        L R  A   +   A  V     + G  PD ++   L+  LC+   
Sbjct: 31  RPESPNVAPNPASARLRRLIAREDLAGAARLVELSASRDGEAPDVYLCTKLIRNLCRRGR 90

Query: 225 VKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
             +AA++         P  +  + +L+ G+C+ G L  A+ ++  M  A   PD   Y  
Sbjct: 91  TSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPVA---PDAYTYTP 147

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+      G++ DA  LL +M R+GC PN  +YTVL++A+C+    E+A     EM   G
Sbjct: 148 LIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKG 207

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C  ++VTY  +I+G C+  ++D   ++L+ +   G  P+ ++Y  ++      +  ++  
Sbjct: 208 CTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVE 267

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           EL  EM +  C+P+   ++++IR  C+ G ++ A+ V  +M     +  T    ++++  
Sbjct: 268 ELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSI 327

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             QG + +A ++   M   G    P   +   +L  L RA++   AK++   +V   C  
Sbjct: 328 CKQGRVDDAFKFLNNMGSYG--CNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPP 385

Query: 524 NVYAWTIWIHSLFSNGHVKEA 544
           N   +  +I  L   G +++A
Sbjct: 386 NEVTFNTFICILCQKGLIEQA 406



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 189/442 (42%), Gaps = 74/442 (16%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLI 172
           R  DA +L  R + +   QP+ V     Y  L+K L   +++  V  L  EM  EK  + 
Sbjct: 227 RVDDARDLLNRLFSYGC-QPDTVS----YTTLLKGLCASKRWDDVEELFAEM-MEKNCMP 280

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPK------------------------------ 202
               F +L+R F    MV++AI+VL +M +                              
Sbjct: 281 NEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFL 340

Query: 203 -----YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
                YGC PD   +  +L  LC+     +A +L  EM R    P+   F + +   C++
Sbjct: 341 NNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQK 400

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK-------------- 302
           G + +A  ++ QM++ G    +V YN L++G+   G +  A EL +              
Sbjct: 401 GLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTL 460

Query: 303 ------------------EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
                             EM  + C PN  ++ VL+   C+   ++EA     +M   GC
Sbjct: 461 LTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGC 520

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             +++TY TL  G  K    +   E+L  ++ +G+ P+ +T+  I+    K++ +EE ++
Sbjct: 521 TPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQ 580

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +    + IG  P    YN ++   CK  E+  A++    M +    P   ++++++ G  
Sbjct: 581 MFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLA 640

Query: 465 GQGCLIEACEYFKEMVGRGLLS 486
            +G L EA +    +  RG++S
Sbjct: 641 REGLLKEAQDLLSMLCSRGVVS 662



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 5/245 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y AL+          +   L   M   KP  IT   +  L+    +A  +  A E++ EM
Sbjct: 425 YNALVNGFCVQGHIDSALELFRSM-PCKPNTIT---YTTLLTGLCNAERLDAAAELVAEM 480

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
               C P+   F  L++  C+   + EA +L ++M E    P+L  + +L  G  K+   
Sbjct: 481 LHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSS 540

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L  +   G  PD++ +++++   ++  ++ +A ++    +  G  P A  Y  +
Sbjct: 541 EDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKI 600

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+  +++ A      M  +GC  +  TY  LI G  +   +    ++L  +  RG+
Sbjct: 601 LLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660

Query: 380 LPNQL 384
           +   L
Sbjct: 661 VSKNL 665



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PDV     +IR  C+ G   +A  V    E +       ++  +V G+   G L  A
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
               + ++G  +  AP   T   L+  L    +V  A  +   ++ +GC+ NV  +T+ +
Sbjct: 130 ----RRLIG-SMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLL 184

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  N   ++A +   +M      P   T+  ++ G+
Sbjct: 185 EAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 222


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 206/411 (50%), Gaps = 27/411 (6%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS- 149
           +E AL   GV L   L   +++R      L +R++ WA++Q NY H   VY  +I  LS 
Sbjct: 103 MEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSS 162

Query: 150 ---KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS------ARMVKKAIEVLDEM 200
              K+++F  V  L++ M++     +  EV   ++R +         +  KK   ++   
Sbjct: 163 TRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIVKRQ 222

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
           P+         F  LLDALCK S V++A  L  +++++ KP    +  + +GWC+     
Sbjct: 223 PEIN------AFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMXFGWCRVRNPG 276

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC---DPNANSYT 317
               VL +M + GF+PD   YN  ++ + + G + +A EL + MR KG     P A +Y 
Sbjct: 277 RGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYA 336

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I AL    +MEE  +    M +SGC  DV TY  +I G C + K+   Y  L+ M ++
Sbjct: 337 IMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKK 396

Query: 378 GILPNQLTY---LHIMLAHEKKEE-LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           G  P+ +TY   L ++  ++  ++ L  C      M ++GC+P V  YN++I +  ++ +
Sbjct: 397 GYPPDIVTYNCFLKVLCDNKMSDDALRHC----DRMIEVGCLPSVQTYNMLISMFFEMND 452

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
              A  +W EM+    +   DS+ +M+ G  G   + +AC   +E+V +G+
Sbjct: 453 HNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGM 503


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 211/422 (50%), Gaps = 8/422 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+  ++KM++F  V +L E+M+     P L T     I+M     +    +A   L 
Sbjct: 85  FTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCN---IVMNCVCRSSQPCRASCFLG 141

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K G EPD   F  LL   C  + +++A  LFD++    F+P++  +T+L++  CK  
Sbjct: 142 KMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNR 201

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  +  QM D G  P++V YN+L+SG  ++G+ +DA  LL++M ++G  PN  ++T
Sbjct: 202 HLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFT 261

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI A  ++ K+ EA   +  M +     DV TYT LI+G C   ++D   ++   M   
Sbjct: 262 ALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESN 321

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN++TY  ++    K + +E+  ++  EM + G V +   Y V+I+  C +G    A
Sbjct: 322 GYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVA 381

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+N+M +    P   ++ V++ G    G + +A   FK M  R +       T   ++
Sbjct: 382 QEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREM--DINIVTYTIII 439

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             + +  KVE A D++  + +KG + NV  +T  I      G + EA +    M +   +
Sbjct: 440 QGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFL 499

Query: 558 PQ 559
           P 
Sbjct: 500 PN 501



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 154/313 (49%), Gaps = 21/313 (6%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFG-AVWALMEEMRKE- 167
           + N+ GD G            +PN V     Y +L+  L ++ ++  A W L + M++  
Sbjct: 209 IFNQMGDNG-----------IRPNVV----TYNSLVSGLCEIGRWSDAAWLLRDMMKRGI 253

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P +IT   F  L+  F     + +A E+   M +    PD F +  L++ LC    + E
Sbjct: 254 QPNVIT---FTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDE 310

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A ++F  M    + P+   +T+L++G+CK  ++ +   +  +M   G   + + Y  L+ 
Sbjct: 311 ARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQ 370

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           GY  +G+   A E+  +M  +   P+  +Y VL+  LC    +E+A   F  M +   + 
Sbjct: 371 GYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDI 430

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           ++VTYT +I G CK  K++  +++  S+  +G+ PN +TY  ++    ++  + E   L 
Sbjct: 431 NIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALF 490

Query: 407 GEMRKIGCVPDVS 419
            +M++ G +P+ S
Sbjct: 491 KKMKEDGFLPNES 503



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 154/335 (45%), Gaps = 2/335 (0%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +  +M  +   P IV +  LLS  A+M +      L ++M+  G  P   +  +++
Sbjct: 65  EALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVM 124

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             +CR  +   A+    +M + G E D+VT+T+L+ GFC   +I+    + D ++  G  
Sbjct: 125 NCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFR 184

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN +TY  ++    K   L   VE+  +M   G  P+V  YN ++   C++G   +A  +
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWL 244

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
             +M    + P   +F  ++  F+  G ++EA E +K M+   +   P   T  AL+N L
Sbjct: 245 LRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVY--PDVFTYTALINGL 302

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
               +++ A+ ++  + + G   N   +T  IH    +  V++      +M    ++   
Sbjct: 303 CTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANT 362

Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            T+  L++G   +    +A E+  ++    A   I
Sbjct: 363 ITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDI 397



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 148/341 (43%), Gaps = 7/341 (2%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  +A +L   M      P+   +T L+  + +M++ +     F +M+  G    + T  
Sbjct: 62  QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCN 121

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +++  C+S +  R    L  M++ G  P+ +T+  ++        +E+ + L  ++  +
Sbjct: 122 IVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGM 181

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  P+V  Y  +I   CK   L  AV ++N+M    + P   ++  +V G    G   +A
Sbjct: 182 GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
               ++M+ RG+   P   T  AL+++ ++  K+  AK+++  ++      +V+ +T  I
Sbjct: 242 AWLLRDMMKRGI--QPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAA 591
           + L + G + EA      M      P   T+  L+ G  K    +   +I  E  +K   
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV 359

Query: 592 ERQITFKM----YKRRGERDLKEKAKKQVDGRKRRARQRRW 628
              IT+ +    Y   G  D+ ++   Q+  R+     R +
Sbjct: 360 ANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTY 400


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 229/475 (48%), Gaps = 44/475 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +Y+ LI +LSK  +      L+EEM     P  + T  F  ++  F     V +  +++D
Sbjct: 247 IYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNT--FNTVIYGFCRLNRVLEGAKLVD 304

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            M   G  P++  +G L+  LCK   + EA  L  ++     P++ HF +L+ G+ + G+
Sbjct: 305 RMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP---GPNVVHFNTLVNGFVRNGR 361

Query: 259 LVEAK-YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           L EA  +V  +M + G+ PD+  ++ L++G  + G    A EL+ +M  KGC PN N+YT
Sbjct: 362 LNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYT 421

Query: 318 VLI-----------------------------------QALCRMEKMEEANRAFVEMERS 342
           +LI                                    ALC+  K+ EA   F EM   
Sbjct: 422 ILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSK 481

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC+ D+ T+ +LI G C+  +++    +   M+  G++ N +T+  ++ A  ++ E++E 
Sbjct: 482 GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++L+ +M   GC  D   YN +I+  CK G +++ + ++ EM    L+P   +  ++++G
Sbjct: 542 LKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILING 601

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F   G +  A E+ ++M+ RG   +P   T  +L+N L +  +++ A +++  +  +G +
Sbjct: 602 FCTAGKVHNALEFMRDMIHRGF--SPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQ 659

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
            +   +   I  L   G   +AC      ++   +P   T+  L+    K  N +
Sbjct: 660 PDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSE 714



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 225/449 (50%), Gaps = 9/449 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  ++K+L  + +      L+ +M K    +  + ++  L+   +    V +A+++L+EM
Sbjct: 213 FGLVMKALCMVNEVDNACLLLRDMTKHG-CVPNSMIYQTLIDALSKRDRVDEALKLLEEM 271

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              GC PD   F  ++   C+ + V E AKL D M  + F P+   +  L++G CK  ++
Sbjct: 272 FLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRI 331

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE-MRRKGCDPNANSYTV 318
            EA+ +L ++      P++V +N L++G+ + G++ +A   + + M   G  P+  +++ 
Sbjct: 332 DEAQALLSKVPG----PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFST 387

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC+      A     +M+  GC+ ++ TYT LI GFCK  +++    IL  M+ +G
Sbjct: 388 LVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKG 447

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              N + Y  ++ A  K  ++ E +++ GEM   GC PD+  +N +I   C++ E+++A+
Sbjct: 448 FSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDAL 507

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++ +M    +   + +F  ++H FL +G + EA +   +M+ RG        T   L+ 
Sbjct: 508 ALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG--CPLDEITYNGLIK 565

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           +L +   VE    ++  ++ KG   ++    I I+   + G V  A  +  DM+     P
Sbjct: 566 ALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSP 625

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
              T+  L+ GL K    Q A  + EK++
Sbjct: 626 DIVTYNSLINGLCKRGRIQEALNLFEKLQ 654



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/482 (24%), Positives = 213/482 (44%), Gaps = 37/482 (7%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA  Q  Y HS+ VY  LI  L     F  +  L+ +M KE+  +    +F+++M+ +
Sbjct: 91  FKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQM-KEEGIVFRESLFILIMKYY 149

Query: 185 ASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPS 242
             A +  +A  +L +M   Y CEP    +  +LD L   +    A+ +F D + +   P+
Sbjct: 150 GRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPN 209

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              F  ++   C   ++  A  +L  M   G  P+ ++Y  L+   ++  ++ +A +LL+
Sbjct: 210 DYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLE 269

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   GC P+ N++  +I   CR+ ++ E  +    M   G   + +TY  L+ G CK+ 
Sbjct: 270 EMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTC 329

Query: 363 KIDRCYEIL--------------------------------DSMIQRGILPNQLTYLHIM 390
           +ID    +L                                D MI  G +P+  T+  ++
Sbjct: 330 RIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLV 389

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               KK      +EL+ +M   GC P+++ Y ++I   CK G+L+EA  +  EM     S
Sbjct: 390 NGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFS 449

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
             T  +  ++      G + EA + F EM  +G    P   T  +L+  L R  ++E A 
Sbjct: 450 LNTVGYNALISALCKHGKIHEALDMFGEMSSKG--CKPDIFTFNSLIFGLCRVDEMEDAL 507

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  +V +G   N   +   IH+    G ++EA     DM+         T+  L++ L
Sbjct: 508 ALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKAL 567

Query: 571 KK 572
            K
Sbjct: 568 CK 569


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 203/433 (46%), Gaps = 9/433 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           +I  LSK  + GA   + + M  R   P  +   V+  L+     AR +  A+E+L +M 
Sbjct: 132 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEV---VYSALIHGLCKARKMDCALEMLAQMK 188

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
           K  C PD   +  L+D LCK+  V+ A   FDEM E   KP +  +  L+ G+CK G   
Sbjct: 189 KAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTD 248

Query: 261 EAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            A + L Q     G   DI  Y  ++   A+  K+ +A  L++++   GC P   +Y  L
Sbjct: 249 AASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNAL 308

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+M ++EEA     ++  +GC  DVVTYT+LI G  K ++    Y++   M  RG+
Sbjct: 309 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL 368

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             + + Y  ++    +  ++ +   +   M   GCVPDV   + +I    K G +  AV 
Sbjct: 369 ALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVR 428

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  MEA  L+P    +  ++HG      +  A E   +M  +     P   T   L++ 
Sbjct: 429 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM--KKAFCTPDTITYNILIDG 486

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L ++  VE A+  +  ++  GC+ +VY + I I      G+   AC    DM  +     
Sbjct: 487 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSAN 546

Query: 560 PDTFAKLMRGLKK 572
             T+  L+ GL K
Sbjct: 547 VVTYGALISGLCK 559



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 195/414 (47%), Gaps = 51/414 (12%)

Query: 110 VINRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +I+    AG +G    ++ S +     PN V    VY ALI  L K RK      ++ +M
Sbjct: 132 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEV----VYSALIHGLCKARKMDCALEMLAQM 187

Query: 165 RKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK- 221
           +K    P  IT   + +L+     +  V+ A    DEM + GC+PD + +  L+   CK 
Sbjct: 188 KKAFCTPDTIT---YNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKA 244

Query: 222 -----------------------------------NSSVKEAAKLFDEMRER-FKPSLRH 245
                                              N  ++EA  L +++      P++  
Sbjct: 245 GNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIAT 304

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +LL G CK G+L EA  +L ++ D G  PD+V Y +L+ G  +  +  +A++L KEM 
Sbjct: 305 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 364

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G   +   YT LI+ L +  K+ +A+  +  M   GC  DVVT +T+I G  K+ +I 
Sbjct: 365 LRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG 424

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               I  SM  RG+ PN++ Y  ++    K  +++  +E++ +M+K  C PD   YN++I
Sbjct: 425 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 484

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
              CK G+++ A   ++EM  A   P   ++ +++ GF   G    AC  F +M
Sbjct: 485 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 212/469 (45%), Gaps = 44/469 (9%)

Query: 159 ALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           ALME++      P + T   +  L+        +++AI++L ++   GC PD   +  L+
Sbjct: 7   ALMEKITANGCTPTIAT---YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 63

Query: 217 DALCKNSSVKEAAKLFDEM----------------RERFK-------------------- 240
           D L K     EA KLF EM                RE  +                    
Sbjct: 64  DGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCV 123

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P +   ++++ G  K G++  A  +   M+  G  P+ VVY+ L+ G  +  KM  A E+
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 183

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L +M++  C P+  +Y VLI  LC+   +E A   F EM  +GC+ DV TY  LISGFCK
Sbjct: 184 LAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 243

Query: 361 SRKIDRC-YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           +   D   + +       G   +  TY  I+    K +++EE V LM ++   GC P ++
Sbjct: 244 AGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIA 303

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN ++   CK+G L+EA+++  ++     +P   ++  ++ G   +    EA + FKEM
Sbjct: 304 TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 363

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
             RGL  A       AL+  LL+  K+  A  V+  + + GC  +V   +  I  L   G
Sbjct: 364 ALRGL--ALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG 421

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            +  A      M    + P    ++ L+ GL K      A E+  +++K
Sbjct: 422 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 470



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 207/479 (43%), Gaps = 40/479 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  L K ++    + L +EM      L T   +  L+R       + +A  V   M
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV-CYTALIRELLQTGKIPQASSVYKTM 117

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
             +GC PD      ++D L K   +  A ++F  M  R   P+   +++L++G CK  K+
Sbjct: 118 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 177

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L QMK A   PD + YN L+ G  + G +  A     EM   GC P+  +Y +L
Sbjct: 178 DCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237

Query: 320 IQALCRMEKMEEANRAFV-EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           I   C+    + A+ +   E   +GC  D+ TYT ++    K++KI+    +++ +   G
Sbjct: 238 ISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN------------------ 420
             P   TY  ++    K   LEE ++L+ ++   GC PDV                    
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 357

Query: 421 -----------------YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
                            Y  +IR   + G++ +A +V+  M +    P   +   M+ G 
Sbjct: 358 KLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGL 417

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G +  A   FK M  RGL  AP      AL++ L +A+K++ A ++ + +    C  
Sbjct: 418 SKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           +   + I I  L  +G V+ A ++  +M++A   P   T+  L+ G  K  N   A  +
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGV 534



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 175/350 (50%), Gaps = 4/350 (1%)

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           ++EA  L +++      P++  + +LL G CK G+L EA  +L ++ D G  PD+V Y +
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ G  +  +  +A++L KEM  +G   +   YT LI+ L +  K+ +A+  +  M   G
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C  DVVT +T+I G  K+ +I     I  SM  RG+ PN++ Y  ++    K  +++  +
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           E++ +M+K  C PD   YNV+I   CK G+++ A   ++EM  A   P   ++ +++ GF
Sbjct: 182 EMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGF 241

Query: 464 LGQGCLIEACEYF-KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              G    A     +E    G        T  A+++ L + +K+E A  +   I   GC 
Sbjct: 242 CKAGNTDAASHSLAQETTING--CTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCT 299

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +  +   ++ L   G ++EA      ++D    P   T+  L+ GL K
Sbjct: 300 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 349


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 212/436 (48%), Gaps = 7/436 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I    +  +  + + +++ M+ +   P ++T   + IL+    S  M+  A+E  +
Sbjct: 129 YNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVT---YNILIGSLCSRGMLDSALEFKN 185

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           ++ K  C+P    +  L++A      + EA KL DEM E   +P +  + S++ G C+EG
Sbjct: 186 QLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREG 245

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  ++  +   G+ PD++ YN LL G    GK    +EL+ +M  +GC+ N  +Y+
Sbjct: 246 YVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYS 305

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VLI ++CR  K+EE      +M++ G + D   Y  LI+  CK  ++D   E+LD MI  
Sbjct: 306 VLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISD 365

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G +P+ + Y  I+    K++  +E + +  ++ ++GC P+ S+YN +       G    A
Sbjct: 366 GCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRA 425

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + +  EM    + P   ++  ++      G + EA E   +M        P   +   +L
Sbjct: 426 LGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVL 485

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L +  +V  A +V + +V KGC  N   +T  I  +   G + +A      +++ D +
Sbjct: 486 LGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAI 545

Query: 558 PQPDTFAKLMRGLKKL 573
            +  +F +L +   KL
Sbjct: 546 SE-HSFERLYKTFCKL 560



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 186/390 (47%), Gaps = 2/390 (0%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           + R   A    +++  L  +   G +PD  +   L+  L  + ++ +A ++   +     
Sbjct: 64  LSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH 123

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P L  + +++ G+C+  ++  A  VL +MK+ GF PDIV YN L+      G +  A E 
Sbjct: 124 PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEF 183

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             ++ ++ C P   +YT+LI+A      ++EA +   EM     + D+ TY ++I G C+
Sbjct: 184 KNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR 243

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              +DR ++I+ S+  +G  P+ +TY  ++     + + E   ELM +M   GC  +V  
Sbjct: 244 EGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVT 303

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y+V+I   C+ G+++E V +  +M+   L P    +  ++     +G +  A E    M+
Sbjct: 304 YSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMI 363

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             G +  P       +L  L + ++ + A  ++  +   GC  N  ++     +L+S GH
Sbjct: 364 SDGCV--PDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGH 421

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              A    L+M+D  V P   T+  L+  L
Sbjct: 422 KVRALGMILEMLDKGVDPDGITYNSLISCL 451



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 142/300 (47%), Gaps = 3/300 (1%)

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           LS   + G   ++   L+ +  KG  P+    T LI  L   + +++A +    +E  G 
Sbjct: 64  LSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG- 122

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             D++ Y  +I+GFC++ +ID  Y++LD M  +G  P+ +TY  ++ +   +  L+  +E
Sbjct: 123 HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALE 182

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
              ++ K  C P V  Y ++I      G + EA+ + +EM   +L P   ++  ++ G  
Sbjct: 183 FKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMC 242

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G +  A +    +  +G   AP   T   LL  LL   K E   ++ S +V +GCE N
Sbjct: 243 REGYVDRAFQIISSISSKGY--APDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEAN 300

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           V  +++ I S+  +G V+E      DM    + P    +  L+  L K     +A E+ +
Sbjct: 301 VVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLD 360


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 214/488 (43%), Gaps = 55/488 (11%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           RP   ERV+  CG A                   +   Y AL     +  + G    ++ 
Sbjct: 118 RPDDAERVVGACGPAA------------------TVVAYGALTDGYCRAGRLGDARRVVG 159

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            M    P       +  L+        V+ A+ VLD+M   GC PD   +  LL+A CK 
Sbjct: 160 GM----PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKG 215

Query: 223 SSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
              ++A +L D MR E   P+   +  L+ G C EG + +A  +L  +   G +P  V Y
Sbjct: 216 RGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNY 275

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N +L G     +  DA EL+ EM R+ C PN  ++ V+I +LCR   +++A +   +M +
Sbjct: 276 NTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSK 335

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC A++VTY  +I+G C+ R +D    +L  M   G  P+ +TY  ++       +  +
Sbjct: 336 HGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVD 395

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             ELM  M + GC+PD   +N +I   C+ G + +A+ V+ +M     +P + ++  ++ 
Sbjct: 396 AEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIIS 455

Query: 462 GFLGQGCLIEACEYFKEMVGRG--------LLS------------------------APQ 489
           G      L +A E F EM  +G        LL+                        +P 
Sbjct: 456 GLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPH 515

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
                A+L  L R  K E A D+ + +V+ GC  +   + I I  L   G++ EA    +
Sbjct: 516 TVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLI 575

Query: 550 DMMDADVM 557
            +   DV+
Sbjct: 576 KLCSRDVL 583



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 191/413 (46%), Gaps = 53/413 (12%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+++  K R +     L++ MR E   P  +T   + +LM        V  A+E+L
Sbjct: 204 TYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVT---YNVLMDGMCGEGDVDDALELL 260

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
             +P +GC+P    +  +L  LC      +A +L  EM RE   P+   F  ++Y  C++
Sbjct: 261 RNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRK 320

Query: 257 GKLVEAKYVL-----------------------------------VQMKDAGFEPDIVVY 281
           G L +A  +L                                    +MK  G +PDIV Y
Sbjct: 321 GLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTY 380

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N LL G     +  DA EL+  M + GC P+  ++  LI  LC+   M +A   F +M  
Sbjct: 381 NTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPD 440

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  + +TY+T+ISG  K+ K+D+  E+ + M  +G  P+++ Y  +       + +EE
Sbjct: 441 KGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEE 499

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            ++ + +++  G  P    YN ++   C+ G+ + A+++   M ++   P   ++V+++ 
Sbjct: 500 AIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIE 559

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           G   +G L EA E   ++  R             L+NSL++++ + + +++ +
Sbjct: 560 GLAYEGYLNEARELLIKLCSR-----------DVLVNSLIKSEALLLDQNIHA 601


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 206/450 (45%), Gaps = 6/450 (1%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ WA +Q  + H    Y  L+  L   + +   +A+ EEM K       T  F IL+R 
Sbjct: 105 FFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIA-PNTFSFNILIRS 163

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           FA  R    A+   + M +  C+PD   F  L+D LCK    ++A ++F EM    F P 
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223

Query: 243 LRHF-TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
            R   T+++    K  ++ EA+ V  QM+  GF PD + YN ++ G A+ G   +A ++L
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M  K C P   +Y +L+ +LC+   +E A   F  M  SG   + V YT+LI GF KS
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            ++     + D M++ G  P+ +T+  ++    K    E+  +   EM + GC P+V  Y
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
             +I+   K+G +  A  +   M A    P + +++ ++ GF   G L EA +   E+  
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL-- 461

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMA-KDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
               S+P      +L+N L     VE    D++         L+       I  L   G 
Sbjct: 462 DKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGR 521

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           + EAC     M+     P   T+  L+ GL
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGL 551



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 208/452 (46%), Gaps = 16/452 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A  +P+ +     +  +I  L K   F       EEM +   KP ++T   +  +++  +
Sbjct: 359 AGYRPDVI----THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVT---YTTIIQGLS 411

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLR 244
               V  A  ++  M  +GC PD   + CLLD  CK   + EAA+L DE+ +    P+L+
Sbjct: 412 KIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQ 471

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVYNNLLSGYAQMGKMTDAFELLKE 303
            ++SL+ G C  G + +    L +   A  E  D  +  +++ G  + G++ +A  + + 
Sbjct: 472 LYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQR 531

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV---EMERSGCEADVVTYTTLISGFCK 360
           M  +GC P+A +Y +LI  LCR  +     RAF    ++E+ G   D VTYT L  G CK
Sbjct: 532 MVSEGCKPDATTYNILINGLCR-SRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCK 590

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++DR  ++L+    RG   + + Y  +      + +++  V L  EM + G  PD + 
Sbjct: 591 IGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAA 650

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y  +I    K+ +L++A   ++EM      P   ++  +V      G + EA   F+ M+
Sbjct: 651 YCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESML 710

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            RG L         AL++   +A KV+ A  ++  ++++G              L  +G 
Sbjct: 711 ARGELVGSVM-IYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            ++A     +M      P   TF  ++ GL+K
Sbjct: 770 TEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 147/306 (48%), Gaps = 5/306 (1%)

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           + AGF+ D+  YN L++        +  + + +EM + G  PN  S+ +LI++  R  + 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           ++A   F  M+R  C+ D+ T+  L+   CK+   ++ +E+   M+  G +P     LH 
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRA-LHT 229

Query: 390 MLAHE--KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            +     K + ++E  E+ G+M K G  PD   YN +I    K G  +EA+ V + M A 
Sbjct: 230 AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAK 289

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
           +  P   ++ ++V+     G L  A E F+ M   G    P      +L++   ++ +++
Sbjct: 290 ACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGF--RPNSVIYTSLIHGFAKSGRMK 347

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A  ++  +V  G   +V   T+ I  L  +G+ ++A     +MM     P   T+  ++
Sbjct: 348 EACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTII 407

Query: 568 RGLKKL 573
           +GL K+
Sbjct: 408 QGLSKI 413



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 2/174 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTS 248
           V +A+ +  EM + G  PD   + C+++ L K   +++A K FDEM  +  KP++  +T+
Sbjct: 629 VDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L+   C  G + EA +    M   G     +++Y+ L+ G+ +  K+  A +L ++M  +
Sbjct: 689 LVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           G  P A +   L   L R  K E+A     EM   G      T+T ++ G  KS
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKS 802



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 117 AGNLGYRYYMWAS--KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLI 172
           AGN+   ++ + S   +   V S  +Y ALI    K  K  A   L E+M  R   P  +
Sbjct: 696 AGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAV 755

Query: 173 TT-EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           T+  +F  L+R    +   +KA E+L EM   G  P    F  +LD L K+    +  KL
Sbjct: 756 TSASLFDGLVR----SGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKL 811

Query: 232 FDE 234
             E
Sbjct: 812 VQE 814


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 189/384 (49%), Gaps = 6/384 (1%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + GC+P    +  LL+A+CK+S   EA  + DEMR +   P++  +  ++ G C+EG+
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +AK +L ++   GF+PDIV Y  +L G     +  D   L  EM  K C PN  ++ +
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L++  CR   +E A +   +M + GC  +      +I+  CK  ++D  Y+ L++M   G
Sbjct: 298 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 357

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ ++Y  ++    +    E   EL+ EM +  C P+   +N  I + C+ G +++A+
Sbjct: 358 CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAI 417

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   M     S G  ++  +VHGF  QG +  A E F       L   P   T   LL 
Sbjct: 418 KLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN-----LPCEPNTITYTTLLT 472

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L  A++++ A ++ + ++ K C LN   + + +      G V+EA      MM+    P
Sbjct: 473 GLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTP 532

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEI 582
              TF  L+ G+ K  N + A E+
Sbjct: 533 NLITFNTLLDGITKDCNSEEALEL 556



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 205/417 (49%), Gaps = 15/417 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     Y  ++K L   R++  V  L  EM  +K  P  +T   F +L+R F    
Sbjct: 254 QPDIVS----YTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT---FDMLVRFFCRGG 306

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
           MV++AI+VL +M ++GC P+  +   +++A+CK   V +A    + M      P    +T
Sbjct: 307 MVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYT 366

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           ++L G C+ G+   AK +L +M      P+ V +N  +    Q G +  A +L++ M   
Sbjct: 367 TVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEY 426

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC     +Y  L+   C   +++ A   F  +    CE + +TYTTL++G C + ++D  
Sbjct: 427 GCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAA 483

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+L  MIQ+    N +T+  ++    +K  +EE +EL+ +M + GC P++  +N ++  
Sbjct: 484 AELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDG 543

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             K    +EA+ + + + +  +S  T ++  +V     +    EA +    +   G+   
Sbjct: 544 ITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGM--R 601

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           P+ G    +L +L +  + + A D ++ +V+ GC  N   + I I  L   G +KEA
Sbjct: 602 PKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 658



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 158/311 (50%), Gaps = 4/311 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  ++R    A   + A E+L EM +  C P+E  F   +  LC+   +++A KL + M 
Sbjct: 365 YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMP 424

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E      +  + +L++G+C +G++  A   L    +   EP+ + Y  LL+G     ++ 
Sbjct: 425 EYGCSVGIVTYNALVHGFCVQGRVDSA---LELFNNLPCEPNTITYTTLLTGLCHAERLD 481

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A ELL EM +K C  NA ++ VL+   C+   +EEA     +M   GC  +++T+ TL+
Sbjct: 482 AAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLL 541

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G  K    +   E+L  ++ +G+  + +TY  ++    +++  EE ++++  ++ +G  
Sbjct: 542 DGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMR 601

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P V  YN ++   CK  E  +A++ +  M +    P   ++++++ G   +G L EA   
Sbjct: 602 PKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYV 661

Query: 476 FKEMVGRGLLS 486
             E+  +G+LS
Sbjct: 662 LSELYAKGVLS 672



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 3/229 (1%)

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
           +M+QRG  P+ +TY  ++ A  K     E + ++ EMR  GC P++  YNV+I   C+ G
Sbjct: 177 TMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREG 236

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + +A  + N + +    P   S+  ++ G        +    F EMV +  +  P   T
Sbjct: 237 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV--PNEVT 294

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              L+    R   VE A  V   +   GC  N     I I+++   G V +A  +  +M 
Sbjct: 295 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 354

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKMY 600
                P   ++  ++RGL +    + A E + E VRK     ++TF  +
Sbjct: 355 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTF 403



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 7/256 (2%)

Query: 132 PNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           P Y  S  +  Y AL+       +  +   L   +  E P  IT   +  L+     A  
Sbjct: 424 PEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE-PNTIT---YTTLLTGLCHAER 479

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +  A E+L EM +  C  +   F  L+   C+   V+EA +L ++M E    P+L  F +
Sbjct: 480 LDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 539

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL G  K+    EA  +L  +   G   D + Y++++   ++  +  +A ++L  ++  G
Sbjct: 540 LLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMG 599

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P    Y  ++ ALC+  + ++A   F  M  +GC  +  TY  LI G      +    
Sbjct: 600 MRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAR 659

Query: 369 EILDSMIQRGILPNQL 384
            +L  +  +G+L   L
Sbjct: 660 YVLSELYAKGVLSKSL 675


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 202/424 (47%), Gaps = 7/424 (1%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQP-NYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           P L   V+ R  + G    +++ +       YVH    +   I   +++     VW+L+ 
Sbjct: 56  PNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIH 115

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            MR  +    + + F I+  R+ASA    KA+++   M ++GC  D   F  +LD LCK+
Sbjct: 116 RMRSLRIG-PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 174

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
             V++A +LF  +R RF      +  +L GWC   +  +A  VL +M + G  P++  YN
Sbjct: 175 KRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYN 234

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L G+ + G++  A+E   EM+++ C+ +  +YT ++       +++ A   F EM R 
Sbjct: 235 TMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIRE 294

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G    V TY  +I   CK   ++    + + M++RG  PN  TY  ++       E    
Sbjct: 295 GVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRG 354

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            ELM  M   GC P+   YN++IR   +  E+++A+ ++ +M +    P  D++ +++ G
Sbjct: 355 EELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISG 414

Query: 463 FLGQG---CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
              +     ++ A +   EMV RG +  P+  T   +LN LL       AK++       
Sbjct: 415 MFVRKRSEDMVVAGKLLLEMVERGFI--PRKFTFNRVLNGLLLTGNQAFAKEILRLQSKS 472

Query: 520 GCEL 523
           G  L
Sbjct: 473 GSRL 476



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            + ++  M    I P+  T+  +   +    + ++ V+L   M + GC  D++++N ++ 
Sbjct: 110 VWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILD 169

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGR 482
           + CK   +++A  ++  +     S  T ++ V+++G+    CLI+    A E  KEMV R
Sbjct: 170 VLCKSKRVEKAYELFRALRG-RFSVDTVTYNVILNGW----CLIKRTPKALEVLKEMVER 224

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+   P   T   +L    RA ++  A + +  +  + CE++V  +T  +H     G +K
Sbjct: 225 GI--NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIK 282

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
            A +   +M+   V+P   T+  +++ L K  N + A  + E++ +   E  +T
Sbjct: 283 RARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 336


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 213/452 (47%), Gaps = 11/452 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +   + S +K +++  V +L  +M       +T  V+   +L+        V  A+ +L 
Sbjct: 91  FGKFLGSFAKKKQYSTVVSLCNQMDLFG---VTHNVYSLNVLINCLCRLNHVDFAVSILG 147

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K G  P    F  L++ LC    +KEA +LF+EM R   +P++  + +++ G CK G
Sbjct: 148 KMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTG 207

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  V  +M+  G +PD+V YN ++    +   + DA E L EM  +G  PN  +Y 
Sbjct: 208 NTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYN 267

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++   C + ++ EA R F EM       D VT T L+ G CK   +     + ++M ++
Sbjct: 268 CMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEK 327

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN  TY  +M  +  +  + E  ++   M + GC P V +YN++I   CK   + EA
Sbjct: 328 GVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEA 387

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            ++  EM   +L+P T ++  ++ G    G   EA   FKEM   GLL  P   T   LL
Sbjct: 388 KSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLL--PNLVTYSILL 445

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +   +   ++ A  +   +  K  E N+   TI I  +F  G ++ A      +    + 
Sbjct: 446 DGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIR 505

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           P   T+  +++GL K     ++ E  +  RKM
Sbjct: 506 PTIRTYTVMIKGLLK---EGLSDEAYDLFRKM 534



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 233/492 (47%), Gaps = 9/492 (1%)

Query: 137 SYDVY--RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           +++VY    LI  L ++       +++ +M K      T   F  L+    +   +K+A+
Sbjct: 120 THNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIH-PTASTFNALINGLCNEGKIKEAV 178

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           E+ +EM + G EP+   +  +++ LCK  +   A  +F +M +   KP +  + +++   
Sbjct: 179 ELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSL 238

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+  + +A   L +M D G  P++  YN ++ G+  +G++ +A  L KEM  +   P+ 
Sbjct: 239 CKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDT 298

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            + T+L+  LC+   + EA   F  M   G E ++ TY  L+ G+C  R ++   ++ + 
Sbjct: 299 VTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEI 358

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           MI++G  P   +Y  ++    K   ++E   L+ EM      PD   Y+ +++  C+ G 
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR 418

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            KEA+N++ EM +  L P   ++ +++ GF   G L EA +  K M  + L   P     
Sbjct: 419 PKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL--EPNIVHH 476

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+  +  A K+E+AK+++S +   G    +  +T+ I  L   G   EA      M D
Sbjct: 477 TILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMED 536

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKMYKRRGERD--LKE 610
              +P   ++  +++G  +  +   A   I E V K  +    TF+M      +D  + +
Sbjct: 537 DGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDEIISQ 596

Query: 611 KAKKQVDGRKRR 622
             +    GRK +
Sbjct: 597 FMRGSSQGRKMK 608



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 194/405 (47%), Gaps = 12/405 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN +     Y  +I  L K         + ++M +   KP ++T   +  ++      R
Sbjct: 190 EPNVIS----YNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVT---YNTIIDSLCKDR 242

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           +V  A+E L EM   G  P+ F + C++   C    + EA +LF EM  R   P     T
Sbjct: 243 LVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLT 302

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+ G CKEG + EA+ V   M + G EP+I  YN L+ GY     M +A ++ + M R+
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQ 362

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC P  +SY +LI   C+  +M+EA     EM       D VTY+TL+ G C+  +    
Sbjct: 363 GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEA 422

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             I   M   G+LPN +TY  ++    K   L+E ++L+  M++    P++ ++ ++I  
Sbjct: 423 LNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEG 482

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
               G+L+ A  +++++ A  + P   ++ VM+ G L +G   EA + F++M   G L  
Sbjct: 483 MFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFL-- 540

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
           P   +   ++   L+ Q    A  +   +V K    N+  + + +
Sbjct: 541 PNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLL 585



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 190/415 (45%), Gaps = 24/415 (5%)

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF---------------------GCLL 216
           +++  R ++ R       +L +  + G  P  F+F                     G  +
Sbjct: 1   MMMFTRKSAYRATASDFRILQQHMEMGIFPSSFLFFNHHHISTSACTRKPSLPQNNGGFV 60

Query: 217 DALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
                N S+ +A A  +  +R   +PS+  F   L  + K+ +      +  QM   G  
Sbjct: 61  SNNSTNISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVT 120

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
            ++   N L++   ++  +  A  +L +M + G  P A+++  LI  LC   K++EA   
Sbjct: 121 HNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVEL 180

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F EM R G E +V++Y T+I+G CK+       ++   M Q G  P+ +TY  I+ +  K
Sbjct: 181 FNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCK 240

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              + + +E + EM   G  P+V  YN ++   C LG+L EA  ++ EM    + P T +
Sbjct: 241 DRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVT 300

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
             ++V G   +G + EA   F+ M  +G+   P   T  AL++     + +  AK V+  
Sbjct: 301 LTILVDGLCKEGMVSEARLVFETMTEKGV--EPNISTYNALMDGYCLQRLMNEAKKVFEI 358

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++ +GC   V+++ I I+    +  + EA S   +M    + P   T++ LM+GL
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 413


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 233/473 (49%), Gaps = 7/473 (1%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           +M  +  P  V++Y  +   +++  K R F A   + EEMR+    +     + +++   
Sbjct: 235 FMEGAGIPPDVYTYSTF---LEAHCKARDFDAAKKVFEEMRRRDCAM-NEVTYNVMISGL 290

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSL 243
             +  V++A    +EM  YG  PD F +G L++ LCK   +KEA  L DEM     KP++
Sbjct: 291 CRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNV 350

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             + +L+ G+ KEGK  EA  +L +M  AG +P+ ++Y+NL+ G  ++G++  A +LL E
Sbjct: 351 VVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNE 410

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M + G  P+  +Y  L+Q   +    + A     EM  SG   +  TY  +I+G C++ +
Sbjct: 411 MIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGE 470

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
                 +L+ MI  G+ PN   Y  +++ H K+  +    E +  M K   +PD+  YN 
Sbjct: 471 SKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNS 530

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I+    +G ++EA   + +++   L P   ++  ++HG+     L +A +  ++M+  G
Sbjct: 531 LIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSG 590

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           L   P   T   LL    ++   E    +   ++  G + + + + I I +L  + +++ 
Sbjct: 591 L--KPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEV 648

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           A     ++    ++P    ++ L+ GL K+ + + A  + +++ K   E  I 
Sbjct: 649 AFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIV 701



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 229/472 (48%), Gaps = 17/472 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFA 185
           A  QPN +    +Y  LI+ L K+ + G    L+ EM K   +P   T   +  LM+   
Sbjct: 379 AGVQPNKI----MYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFT---YHPLMQGHF 431

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
                  A E+L+EM   G  P+ + +G +++ LC+N   KEA  L +EM  E  KP+  
Sbjct: 432 QHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAF 491

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +  L+ G  KEG +  A   L  M  A   PD+  YN+L+ G + +G++ +A E   ++
Sbjct: 492 MYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQV 551

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +++G  P+  +Y+ LI   C+   +E+A++   +M  SG + +  TYT L+ G+ KS   
Sbjct: 552 QKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDH 611

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++   IL SM+  G  P+   Y  ++    + E +E    ++ E+ K G VPD+  Y+ +
Sbjct: 612 EKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSL 671

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK+ ++++AV + +EM    L PG   +  ++ GF   G +  A   F  ++ +GL
Sbjct: 672 ISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGL 731

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  P   T  AL++   +   +  A D++  ++ +G   + + + +          +++A
Sbjct: 732 L--PNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQA 789

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
                +M +         F+ L+RG  K    Q     TEK+  +  +R+I 
Sbjct: 790 LFLTEEMFNRGYA-HVSLFSTLVRGFCKRGRLQ----ETEKLLHVMMDREIV 836



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 174/379 (45%), Gaps = 3/379 (0%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
           V   L+D   KN SV+ AA++   M +    P+ R    LL    +   +     +   M
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFM 236

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           + AG  PD+  Y+  L  + +      A ++ +EMRR+ C  N  +Y V+I  LCR   +
Sbjct: 237 EGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV 296

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           EEA     EM   G   D  TY  L++G CK  ++     +LD M   G+ PN + Y  +
Sbjct: 297 EEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATL 356

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +    K+ +  E  +++ EM   G  P+   Y+ +IR  CK+G+L  A  + NEM     
Sbjct: 357 VDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGH 416

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P T ++  ++ G         A E   EM   G+L  P   T   ++N L +  + + A
Sbjct: 417 RPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGIL--PNAYTYGIMINGLCQNGESKEA 474

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            ++   ++++G + N + +   I      GH+  AC    +M  A+V+P    +  L++G
Sbjct: 475 GNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKG 534

Query: 570 LKKLYNRQIAAEITEKVRK 588
           L  +   + A E   +V+K
Sbjct: 535 LSTVGRIEEAEEYYAQVQK 553



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 140/276 (50%), Gaps = 7/276 (2%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           D Y  L++   K      V ++++ M    +KP      ++ I++R  + +  ++ A  V
Sbjct: 596 DTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPD---NHIYGIVIRNLSRSENMEVAFMV 652

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L E+ K G  PD  ++  L+  LCK + +++A  L DEM +E  +P +  + +L+ G+C+
Sbjct: 653 LTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCR 712

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G +  A+ V   +   G  P+ V Y  L+ G  + G +TDAF+L K+M  +G  P+A  
Sbjct: 713 SGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFV 772

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y VL         +E+A     EM   G  A V  ++TL+ GFCK  ++    ++L  M+
Sbjct: 773 YNVLATGCSDAADLEQALFLTEEMFNRG-YAHVSLFSTLVRGFCKRGRLQETEKLLHVMM 831

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            R I+PN  T  +++    K  +L E   +  E+++
Sbjct: 832 DREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQ 867



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 160/408 (39%), Gaps = 76/408 (18%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI   SK          +E M K    P L     +  L++  ++   +++A E  
Sbjct: 492 MYAPLIIGHSKEGHISLACESLENMTKANVLPDLF---CYNSLIKGLSTVGRIEEAEEYY 548

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            ++ K G  PDEF +  L+   CK  ++++A +L  +M     KP+   +T LL G+ K 
Sbjct: 549 AQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKS 608

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
               +   +L  M  +G +PD  +Y  ++   ++   M  AF +L E+ + G  P+ + Y
Sbjct: 609 NDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIY 668

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS--- 373
           + LI  LC+M  ME+A     EM + G E  +V Y  LI GFC+S  I R   + DS   
Sbjct: 669 SSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 728

Query: 374 --------------------------------MIQRGILPNQLTYLHIMLAHEKKEELEE 401
                                           M+ RGI P+   Y  +        +LE+
Sbjct: 729 KGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQ 788

Query: 402 CVELMGEMRKIG----------------------------------CVPDVSNYNVVIRL 427
            + L  EM   G                                   VP+      VI  
Sbjct: 789 ALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITE 848

Query: 428 ACKLGELKEAVNVWNEMEAASLS-PGTDSFVVMVHGFLGQGCLIEACE 474
             K G+L EA  V+ E++    S   TD F ++    + +G +   C+
Sbjct: 849 FGKAGKLCEAHRVFAELQQKKASQSSTDRFSLLFTDMINKGLIPPKCD 896


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 227/484 (46%), Gaps = 42/484 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  L++ L +  +      L+  M KE   +    ++  L+  ++ A+   +A + L EM
Sbjct: 13  FAILLRGLCRSNQLEKARQLLGRM-KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 71

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K  C P    +  ++D LCK    K+A KL DEMR++   P++  +  ++ G C+E KL
Sbjct: 72  VKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKL 131

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EAK +L +M   G+ PD+V YN+ + G  +  ++ +A + L  M      P+  SYT +
Sbjct: 132 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT---PDVVSYTTV 188

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+   ++ A+R   +M   GC  DVVTY++LI GFCK  +++R   +LDSM++ G 
Sbjct: 189 INGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 248

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN + Y  ++ A  +   + +  +++ EM + G  PDV +YN  I   CK   +K+A  
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 308

Query: 440 VWNEMEAASLSPGTDSF-----------------------------------VVMVHGFL 464
           V++ M     +P   S+                                    V++ G  
Sbjct: 309 VFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLC 368

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             G   EAC  F +++   +   P       +L+S  + ++++ A  +   ++ + C  N
Sbjct: 369 KGGRFDEACALFSKVLDEKICE-PDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC-CN 426

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           V  W I +H L  +  + +A +  L M+D   +P   T+  L+  + K      A E+ E
Sbjct: 427 VVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFE 486

Query: 585 KVRK 588
           +  K
Sbjct: 487 EAVK 490



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 136/546 (24%), Positives = 231/546 (42%), Gaps = 105/546 (19%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVIL 180
           R  +   K+   V    +Y ALI   SK + FG  +  + EM K    P ++T   +  +
Sbjct: 30  RQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVT---YTNI 86

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-- 238
           +     A   K A+++LDEM   GC P+ + +  +++ LC+   + EA K+ +EM  R  
Sbjct: 87  VDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY 146

Query: 239 -------------------------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
                                            P +  +T+++ G CK G L  A  +L 
Sbjct: 147 FPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLD 206

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           QM + G  PD+V Y++L+ G+ + G++  A  LL  M + GC PN  +Y  L+ AL R+ 
Sbjct: 207 QMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLG 266

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
            + +A    VEMER G   DVV+Y   I G CK+ ++ +   + D M++RG  PN  +Y 
Sbjct: 267 HIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYS 326

Query: 388 HIMLAHEKKEELEECVELMGEMR-------------------KIG--------------- 413
            ++    KK+EL++ + L+ + R                   K G               
Sbjct: 327 MLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDE 386

Query: 414 --CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
             C PDV  YNV++   CK  ++ +A+ +  +M   +      ++ ++VHG      L +
Sbjct: 387 KICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSD 445

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC---------- 521
           A      MV  G +  P + T   L++++ +  K   A +++   V  GC          
Sbjct: 446 AETMLLTMVDEGFI--PDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSAL 503

Query: 522 ------------------ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
                             +L+V  W   I     NG         ++++++DV P   TF
Sbjct: 504 ITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTF 563

Query: 564 AKLMRG 569
            K + G
Sbjct: 564 GKEISG 569



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 173/341 (50%), Gaps = 6/341 (1%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAK 263
           C+PD F F  LL  LC+++ +++A +L   M+E    P    + +L+ G+ K     +A 
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
             L +M      P +V Y N++ G  + G+  DA +LL EMR KGC PN  +Y V+++ L
Sbjct: 66  KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           C   K++EA +   EM   G   DVVTY + I G CK  ++D   + L  M    + P+ 
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDV 182

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           ++Y  ++    K  +L+    ++ +M   GC PDV  Y+ +I   CK GE++ A+ + + 
Sbjct: 183 VSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDS 242

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M      P   ++  ++      G + +A +   EM  RG    P   +  A ++ L +A
Sbjct: 243 MLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGF--TPDVVSYNACIDGLCKA 300

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           ++V+ AK V+  +V +GC  N  ++++ +  L     + +A
Sbjct: 301 ERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDA 341



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 139/304 (45%), Gaps = 5/304 (1%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M D   +PD   +  LL G  +  ++  A +LL  M+  GC P+   Y  LI    + + 
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
             +A +   EM ++ C   VVTYT ++ G CK+ +     ++LD M  +G  PN  TY  
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           I+    ++ +L+E  +++ EM   G  PDV  YN  I+  CK   + EA      M    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---P 177

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           ++P   S+  +++G    G L  A     +M  RG    P   T  +L++   +  +VE 
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRG--CTPDVVTYSSLIDGFCKGGEVER 235

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  +   ++  GC  N+ A+   + +L   GH+ +A    ++M      P   ++   + 
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295

Query: 569 GLKK 572
           GL K
Sbjct: 296 GLCK 299



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 149/310 (48%), Gaps = 16/310 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI----EV 196
           Y  L++ L K ++      L+E+ R EK Q++   ++ +L+          +A     +V
Sbjct: 325 YSMLVEELCKKKELDDAITLVEQAR-EKYQIVDILLYTVLLDGLCKGGRFDEACALFSKV 383

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           LDE     CEPD F +  +LD+ CK   + +A ++  +M ER   ++  +  L++G C +
Sbjct: 384 LDEKI---CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVD 440

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +L +A+ +L+ M D GF PD V Y  L+    + GK   A EL +E  + GC P+  +Y
Sbjct: 441 DRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTY 500

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI  L      EEA   F ++       DV  +  +I G+ ++   D   ++   +I+
Sbjct: 501 SALITGLVHENMAEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIE 553

Query: 377 RGILPNQLTY-LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             + PN  T+   I     K E L +   L     K G  PD+   N +I +  K G+L+
Sbjct: 554 SDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLE 613

Query: 436 EAVNVWNEME 445
           EA  ++  M+
Sbjct: 614 EARRIFYSMK 623



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 226/489 (46%), Gaps = 35/489 (7%)

Query: 66  SHNEFSHDVEKIFRI--LKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYR 123
           ++N F   + K  R+   +KF +R+P     + ++           VIN    +G+L   
Sbjct: 152 TYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYT----------TVINGLCKSGDLDSA 201

Query: 124 YYMWASKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVI 179
             M   +  N   + DV  Y +LI    K  +      L++ M K   +P ++     + 
Sbjct: 202 SRML-DQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG 260

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
            + R      + KA ++L EM + G  PD   +   +D LCK   VK+A  +FD M ER 
Sbjct: 261 ALHRLGH---IGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG 317

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P+   ++ L+   CK+ +L +A  ++ Q ++     DI++Y  LL G  + G+  +A 
Sbjct: 318 CTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEAC 377

Query: 299 ELL-KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEADVVTYTTLIS 356
            L  K +  K C+P+   Y V++ + C+  ++++A +   +M ER+ C  +VVT+  L+ 
Sbjct: 378 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC--NVVTWNILVH 435

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G C   ++     +L +M+  G +P+ +TY  ++ A  K  +    +EL  E  K GCVP
Sbjct: 436 GLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVP 495

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           DV  Y+ +I         +EA  ++ +++ A  +        M+ G+   G      + F
Sbjct: 496 DVVTYSALITGLVHENMAEEAYLLFTKLDVALWN-------AMILGYAENGSGDLGLKLF 548

Query: 477 KEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            E++   +  +A  +G  K +   L++A+ +  A+ ++   V  G   +++     I   
Sbjct: 549 VELIESDVEPNARTFG--KEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVF 606

Query: 536 FSNGHVKEA 544
              G ++EA
Sbjct: 607 AKCGDLEEA 615



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMV 190
            ++  +  Y  L+ ++ K  K  A   L EE  K    P ++T   +  L+       M 
Sbjct: 457 GFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVT---YSALITGLVHENMA 513

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++A  +  ++       D  ++  ++    +N S     KLF E+ E   +P+ R F   
Sbjct: 514 EEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKE 566

Query: 250 LYG-WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           + G   K   L +A+ +  +    GF PD+ V N L+  +A+ G + +A  +   M++
Sbjct: 567 ISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 225/472 (47%), Gaps = 17/472 (3%)

Query: 110 VINRCGDAGNLGYRYYMWASK-----QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           VIN     G+L   Y  +         PN V     Y ++I +L K +       ++  M
Sbjct: 94  VINGFFKEGDLDKTYSTYNEMLDQRISPNVV----TYNSIIAALCKAQTVDKAMEVLTTM 149

Query: 165 RKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            K    P  +T    V     F S+   K+AI  L +M   G EPD   +  L+D LCKN
Sbjct: 150 VKSGVMPDCMTYNSIV---HGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 206

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
               EA K+FD M +R  KP +  + +LL G+  +G LVE   +L  M   G  P+  V+
Sbjct: 207 GRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 266

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           + L+  YA+  K+ +A  +  +MR++G +PNA +Y  +I  LC+  ++E+A   F +M  
Sbjct: 267 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 326

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G     + Y +LI G C   K +R  E++  M+ RGI  N + +  I+ +H K+  + E
Sbjct: 327 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 386

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             +L   M +IG  PD+  Y+ +I   C  G++ EA  +   M +  + P   ++  +++
Sbjct: 387 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLIN 446

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G+     + +A   F+EM   G+  +P   T   +L  L + ++   AK+++  I   G 
Sbjct: 447 GYCKISRMKDALVLFREMESSGV--SPDIITYNIILQGLFQTRRTAAAKELYVGITKSGR 504

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +L +  + I +H L  N    +A     ++   D+  +  TF  ++  L K+
Sbjct: 505 QLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKV 556



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 204/415 (49%), Gaps = 8/415 (1%)

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDAL 219
           E +R+  P + +   + IL+         ++A+E+L  M   G  C PD   +  +++  
Sbjct: 42  ELLRRGIPDVFS---YNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGF 98

Query: 220 CKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
            K   + +    ++EM  +R  P++  + S++   CK   + +A  VL  M  +G  PD 
Sbjct: 99  FKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC 158

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           + YN+++ G+   G+  +A   LK+MR  G +P+  +Y  L+  LC+  +  EA + F  
Sbjct: 159 MTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDS 218

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M + G + ++ TY TL+ G+     +   + +LD M++ GI PN   +  ++ A+ K+E+
Sbjct: 219 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 278

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +EE + +  +MR+ G  P+   Y  VI + CK G +++A+  + +M    LSPG   +  
Sbjct: 279 VEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 338

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++HG         A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V 
Sbjct: 339 LIHGLCTCNKWERAEELILEMLDRGICLNTIF--FNSIIDSHCKEGRVIESEKLFDLMVR 396

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            G + ++  ++  I      G + EA      M+   + P   T++ L+ G  K+
Sbjct: 397 IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKI 451



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 204/451 (45%), Gaps = 44/451 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+  L K  +      + + M K   KP++ T   +  L++ +A+   + +   +LD
Sbjct: 196 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITT---YGTLLQGYATKGALVEMHGLLD 252

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G  P+ +VF  L+ A  K   V+EA  +F +MR++   P+   + +++   CK G
Sbjct: 253 LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSG 312

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A     QM D G  P  +VYN+L+ G     K   A EL+ EM  +G   N   + 
Sbjct: 313 RVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFN 372

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I + C+  ++ E+ + F  M R G + D++TY+TLI G+C + K+D   ++L SM+  
Sbjct: 373 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSV 432

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV------------------- 418
           G+ P+ +TY  ++  + K   +++ + L  EM   G  PD+                   
Sbjct: 433 GMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAA 492

Query: 419 ----------------SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
                           S YN+++   CK     +A+ ++  +    L     +F +M+  
Sbjct: 493 KELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDA 552

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
            L  G   EA + F      GL+  P Y T + +  +++    +E    ++  +   GC 
Sbjct: 553 LLKVGRNDEAKDLFVAFSSNGLV--PNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCT 610

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
           ++       +  L   G +  A +Y L M+D
Sbjct: 611 VDSGMLNFIVRELLQRGEITRAGTY-LSMID 640



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 182/404 (45%), Gaps = 39/404 (9%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF IL+  +A    V++A+ V  +M + G  P+   +G ++  LCK+  V++A   F++M
Sbjct: 265 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 324

Query: 236 -RERFKPSLRHFTSLLYG------W-----------------------------CKEGKL 259
             E   P    + SL++G      W                             CKEG++
Sbjct: 325 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 384

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +E++ +   M   G +PDI+ Y+ L+ GY   GKM +A +LL  M   G  P+  +Y+ L
Sbjct: 385 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTL 444

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C++ +M++A   F EME SG   D++TY  ++ G  ++R+     E+   + + G 
Sbjct: 445 INGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGR 504

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
                TY  I+    K +  ++ + +   +  +    +   +N++I    K+G   EA +
Sbjct: 505 QLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 564

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++    +  L P   ++ +M    +GQG L E  + F  M   G       G L  ++  
Sbjct: 565 LFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG--CTVDSGMLNFIVRE 622

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           LL+  ++  A    S I  K   L     +++I  L S G  +E
Sbjct: 623 LLQRGEITRAGTYLSMIDEKHFSLEASTASLFI-DLLSGGKYQE 665



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 4/184 (2%)

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           +PDV +YN+++   C     +EA+ + + M  +     P   S+  +++GF  +G L + 
Sbjct: 48  IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKT 107

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              + EM+ + +  +P   T  +++ +L +AQ V+ A +V + +V  G   +   +   +
Sbjct: 108 YSTYNEMLDQRI--SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 165

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
           H   S+G  KEA  +   M    V P   T+  LM  L K      A +I + + K   +
Sbjct: 166 HGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLK 225

Query: 593 RQIT 596
            +IT
Sbjct: 226 PEIT 229


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 201/405 (49%), Gaps = 4/405 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI+ L +  +    + L E+M  +  Q+    V+  L+R F      +   ++ +EM
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQML-DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            + GC PD  +    +D + K   +++   LF E++   F P  R +T L++G  K G  
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +   MK+ G   D   YN ++ G+ + GK+  A++LL+EM+ KG +P   +Y  +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L ++++++EA   F E +  G E +VV Y++LI GF K  +ID  Y I++ ++Q+G+
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 720

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  T+  ++ A  K EE+ E +     M+ + C P+   Y+++I   CK+ +  +A  
Sbjct: 721 TPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            W EM+     P   ++  M+ G    G ++EA   F++   +G           A++  
Sbjct: 781 FWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG--GVADSAIYNAIIEG 838

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  A +   A  ++     KGC +      + + SL     +++A
Sbjct: 839 LSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 141/592 (23%), Positives = 263/592 (44%), Gaps = 34/592 (5%)

Query: 3   RSSSKALSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTD 62
           R   +A + +   R+  F P  +  T+ + + +T+             ++ DC       
Sbjct: 179 RKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTS-------------RDSDC----MLT 221

Query: 63  THGSHNEFSHDVE-KIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVI--NRC----G 115
                 E  + V   +F  L +  +R  +++ AL     +    L   V+  N C    G
Sbjct: 222 LFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFG 281

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
            AG +   +  +   + N +   DV Y ++I  L K  +      L E M + K Q+   
Sbjct: 282 KAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNK-QVPCA 340

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
             +  ++  +  A   + A  +L+   + GC P    + C+L  L +   V EA K F+E
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           M++   P+L  +  ++   CK GKL  A  V   MKDAG  P+++  N ++    +  ++
Sbjct: 401 MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRL 460

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            DA  + + +  K C P+A +Y  LI+ L R  +++EA + + +M  +    + V YT+L
Sbjct: 461 DDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSL 520

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I  F K  + +  ++I + M++ G  P+ L     M    K  E+E+   L  E++ +G 
Sbjct: 521 IRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF 580

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PD  +Y ++I    K G   EA  ++  M+       T ++  ++ GF   G + +A +
Sbjct: 581 IPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 640

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM  +G    P   T  ++++ L +  +++ A  ++    +KG ELNV  ++  I  
Sbjct: 641 LLEEMKTKG--HEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               G + EA     ++M   + P   T+  L+  L K      A EI+E +
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK------AEEISEAL 744



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 218/470 (46%), Gaps = 41/470 (8%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE 163
           P L   V+ R  D  N    Y+ WA +  +  H  + Y +L+  +++ RKF  +  ++EE
Sbjct: 97  PELVIGVLRRLKDVNN-AVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEE 155

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           M              I++  F  +R +++A   +  M K    P    +  L+ AL  + 
Sbjct: 156 MSIAGFGPSNNTCIEIVL-SFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSR 214

Query: 224 SVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                  LF +M+E  +  ++  FT+L+  + +EG++  A  +L +MK    EPD+V+YN
Sbjct: 215 DSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYN 274

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
             +  + + GK+  A++   EM+  G   +  +YT +I  LC+ +++ EA   F  M+++
Sbjct: 275 VCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQN 334

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
                   Y T+I G+  + K +  Y +L+   ++G +P+ ++Y  I+    +K +++E 
Sbjct: 335 KQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEA 394

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++   EM+K   +P++S YN++I + CK G+L+ A+ V + M+ A L P   +  +MV  
Sbjct: 395 LKKFEEMKK-DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMV-- 451

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                                              + L +AQ+++ A  ++  +  K C 
Sbjct: 452 -----------------------------------DRLCKAQRLDDACSIFEGLDHKTCR 476

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +   +   I  L  +G V EA      M+DA+ +P    +  L+R   K
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 53/337 (15%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K   ++     Y  LI  L K       + L   M KE+  ++ T  +  ++  F  +  
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTM-KEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V KA ++L+EM   G EP    +G ++D L K   + EA  LF+E + +  + ++  ++S
Sbjct: 635 VNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 249 LLYGWCKEGKLVEAKYVLVQ-----------------------------------MKDAG 273
           L+ G+ K G++ EA  ++ +                                   MKD  
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P+ + Y+ L+ G  ++ K   AF   +EM+++G  PN  +YT +I  L +   + EA+
Sbjct: 755 CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEAD 814

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F + +  G  AD   Y  +I G   + +    Y + +    +G      T        
Sbjct: 815 TLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKT-------- 866

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
                   CV L+  + K  C+   +    V+R   K
Sbjct: 867 --------CVVLLDSLHKAECIEQAAIVGAVLRETAK 895


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 201/405 (49%), Gaps = 4/405 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI+ L +  +    + L E+M  +  Q+    V+  L+R F      +   ++ +EM
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQML-DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            + GC PD  +    +D + K   +++   LF E++   F P  R +T L++G  K G  
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +   MK+ G   D   YN ++ G+ + GK+  A++LL+EM+ KG +P   +Y  +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L ++++++EA   F E +  G E +VV Y++LI GF K  +ID  Y I++ ++Q+G+
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 720

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  T+  ++ A  K EE+ E +     M+ + C P+   Y+++I   CK+ +  +A  
Sbjct: 721 TPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            W EM+     P   ++  M+ G    G ++EA   F++   +G           A++  
Sbjct: 781 FWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG--GVADSAIYNAIIEG 838

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  A +   A  ++     KGC +      + + SL     +++A
Sbjct: 839 LSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 141/592 (23%), Positives = 263/592 (44%), Gaps = 34/592 (5%)

Query: 3   RSSSKALSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTD 62
           R   +A + +   R+  F P  +  T+ + + +T+             ++ DC       
Sbjct: 179 RKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTS-------------RDSDC----MLT 221

Query: 63  THGSHNEFSHDVE-KIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVI--NRC----G 115
                 E  + V   +F  L +  +R  +++ AL     +    L   V+  N C    G
Sbjct: 222 LFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFG 281

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
            AG +   +  +   + N +   DV Y ++I  L K  +      L E M + K Q+   
Sbjct: 282 KAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNK-QVPCA 340

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
             +  ++  +  A   + A  +L+   + GC P    + C+L  L +   V EA K F+E
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           M++   P+L  +  ++   CK GKL  A  V   MKDAG  P+++  N ++    +  ++
Sbjct: 401 MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRL 460

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            DA  + + +  K C P+A +Y  LI+ L R  +++EA + + +M  +    + V YT+L
Sbjct: 461 DDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSL 520

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I  F K  + +  ++I + M++ G  P+ L     M    K  E+E+   L  E++ +G 
Sbjct: 521 IRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF 580

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PD  +Y ++I    K G   EA  ++  M+       T ++  ++ GF   G + +A +
Sbjct: 581 IPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 640

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM  +G    P   T  ++++ L +  +++ A  ++    +KG ELNV  ++  I  
Sbjct: 641 LLEEMKTKG--HEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               G + EA     ++M   + P   T+  L+  L K      A EI+E +
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK------AEEISEAL 744



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 218/470 (46%), Gaps = 41/470 (8%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE 163
           P L   V+ R  D  N    Y+ WA +  +  H  + Y +L+  +++ RKF  +  ++EE
Sbjct: 97  PELVIGVLRRLKDVNN-AVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEE 155

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           M              I++  F  +R +++A   +  M K    P    +  L+ AL  + 
Sbjct: 156 MSIAGFGPSNNTCIEIVL-SFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSR 214

Query: 224 SVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                  LF +M+E  +  ++  FT+L+  + +EG++  A  +L +MK    EPD+V+YN
Sbjct: 215 DSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYN 274

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
             +  + + GK+  A++   EM+  G   +  +YT +I  LC+ +++ EA   F  M+++
Sbjct: 275 VCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQN 334

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
                   Y T+I G+  + K +  Y +L+   ++G +P+ ++Y  I+    +K +++E 
Sbjct: 335 KQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEA 394

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++   EM+K   +P++S YN++I + CK G+L+ A+ V + M+ A L P   +  +MV  
Sbjct: 395 LKKFEEMKK-DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMV-- 451

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                                              + L +AQ+++ A  ++  +  K C 
Sbjct: 452 -----------------------------------DRLCKAQRLDDACSIFEGLDHKTCR 476

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +   +   I  L  +G V EA      M+DA+ +P    +  L+R   K
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 53/337 (15%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K   ++     Y  LI  L K       + L   M KE+  ++ T  +  ++  F  +  
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTM-KEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V KA ++L+EM   G EP    +G ++D L K   + EA  LF+E + +  + ++  ++S
Sbjct: 635 VNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 249 LLYGWCKEGKLVEAKYVLVQ-----------------------------------MKDAG 273
           L+ G+ K G++ EA  ++ +                                   MKD  
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P+ + Y+ L+ G  ++ K   AF   +EM+++G  PN  +YT +I  L +   + EA+
Sbjct: 755 CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEAD 814

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F + +  G  AD   Y  +I G   + +    Y + +    +G      T        
Sbjct: 815 TLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKT-------- 866

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
                   CV L+  + K  C+   +    V+R   K
Sbjct: 867 --------CVVLLDSLHKAECIEQAAIVGAVLRETAK 895


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 213/437 (48%), Gaps = 39/437 (8%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKL 231
           T+ VF ++++ ++   ++ KA+ ++     +G  P    +  +LDA  ++  ++  A  +
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192

Query: 232 FDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           F EM E +  P++  +  L+ G+C  G +  A  +  +M+  G  P++V YN L+ GY +
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           + K+ D F+LL+ M  KG +PN  SY V+I  LCR  +M+E +    EM R G   D VT
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312

Query: 351 YTTLISGF-----------------------------------CKSRKIDRCYEILDSMI 375
           Y TLI G+                                   CK+  ++R  E LD M 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            RG+ PN+ TY  ++    +K  + E   ++ EM   G  P V  YN +I   C  G+++
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+ V  +M+   LSP   S+  ++ GF     + EA    +EMV +G+   P   T  +
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI--KPDTITYSS 490

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+      ++ + A D++  ++  G   + + +T  I++    G +++A     +M++  
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550

Query: 556 VMPQPDTFAKLMRGLKK 572
           V+P   T++ L+ GL K
Sbjct: 551 VLPDVVTYSVLINGLNK 567



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 219/457 (47%), Gaps = 23/457 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y  LI    K+RK    + L+  M  +  +P LI+  V +  + R    RM
Sbjct: 238 PNVV----TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCR--EGRM 291

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            K+   VL EM + G   DE  +  L+   CK  +  +A  +  EM R    PS+  +TS
Sbjct: 292 -KEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++  CK G +  A   L QM+  G  P+   Y  L+ G++Q G M +A+ +L+EM   G
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y  LI   C   KME+A     +M+  G   DVV+Y+T++SGFC+S  +D   
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   M+++GI P+ +TY  ++    ++   +E  +L  EM ++G  PD   Y  +I   
Sbjct: 471 RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE-----YFKEMVGRG 483
           C  G+L++A+ + NEM    + P   ++ V+++G   Q    EA       +++E V   
Sbjct: 531 CMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSD 590

Query: 484 LL--------SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           +         S  ++ ++ +L+        +  A  V+  ++ K  + +  A+ I IH  
Sbjct: 591 VTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGH 650

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              G +++A +   +M+ +  +    T   L++ L K
Sbjct: 651 CRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 172/380 (45%), Gaps = 56/380 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LIK   K   F     +  EM +    P +IT   +  L+     A  + +A+E LD
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVIT---YTSLIHSMCKAGNMNRAMEFLD 369

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G  P+E  +  L+D   +   + EA ++  EM +  F PS+  + +L+ G C  G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ +A  VL  MK+ G  PD+V Y+ +LSG+ +   + +A  + +EM  KG  P+  +Y+
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LIQ  C   + +EA   + EM R G   D  TYT LI+ +C    +++  ++ + M+++
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549

Query: 378 GILPNQLTY----------------------------------LHIMLAHEKKEELEECV 403
           G+LP+ +TY                                   H ++ +    E +  V
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVV 609

Query: 404 ELM------GEMRKIGCV----------PDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            L+      G M +   V          PD + YN++I   C+ G++++A  ++ EM  +
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669

Query: 448 SLSPGTDSFVVMVHGFLGQG 467
                T + + +V     +G
Sbjct: 670 GFLLHTVTVIALVKALHKEG 689



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 164/391 (41%), Gaps = 28/391 (7%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCG------DAGNLGYRY-YMW 127
           E  +  L K + +      AL     +LR GLT  VI           AGN+     ++ 
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
             +      +   Y  L+   S+       + ++ EM      P ++T   +  L+    
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT---YNALINGHC 426

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
               ++ AI VL++M + G  PD   +  +L   C++  V EA ++  EM E+  KP   
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++SL+ G+C++ +  EA  +  +M   G  PD   Y  L++ Y   G +  A +L  EM
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS-------- 356
             KG  P+  +Y+VLI  L +  +  EA R  +++         VTY TLI         
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFK 606

Query: 357 -------GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
                  GFC    +    ++ +SM+ +   P+   Y  ++  H +  ++ +   L  EM
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
            K G +        +++   K G++ E  +V
Sbjct: 667 VKSGFLLHTVTVIALVKALHKEGKVNELNSV 697



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+   + R+      L EEM +    P   T   +  L+  +     ++KA+++ +
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT---YTALINAYCMEGDLEKALQLHN 544

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS--------------- 242
           EM + G  PD   +  L++ L K S  +EA +L  ++  E   PS               
Sbjct: 545 EMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIE 604

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            +   SL+ G+C +G + EA  V   M     +PD   YN ++ G+ + G +  A+ L K
Sbjct: 605 FKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYK 664

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM + G   +  +   L++AL +  K+ E N   V + RS   ++      L+    +  
Sbjct: 665 EMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREG 724

Query: 363 KIDRCYEILDSMIQRGILPNQLT 385
            +D   ++L  M + G LPN ++
Sbjct: 725 NMDVVLDVLAEMAKDGFLPNGIS 747


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 210/443 (47%), Gaps = 10/443 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +  +  A   L+  M    P       +  ++R       V +A+ +LD+M
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 202

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC+P    +  LL+A+CK++   +A ++ DEMR +   P++  +  ++ G C+EG++
Sbjct: 203 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRV 262

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+  L ++   GF+PD V Y  +L G     +  D  EL  EM  K C PN  ++ +L
Sbjct: 263 DDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 322

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++  CR   +E A +   +M   GC A+      +I+  CK  ++D  ++ L++M   G 
Sbjct: 323 VRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGC 382

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++    + E  E+  EL+ EM +  C P+   +N  I + C+ G +++A  
Sbjct: 383 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 442

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M          ++  +V+GF  QG +  A E F  M  +     P   T   LL  
Sbjct: 443 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK-----PNTITYTTLLTG 497

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L  A++++ A ++ + ++ K C  NV  + + +      G + EA      MM+    P 
Sbjct: 498 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 557

Query: 560 PDTFAKLMRGLKKLYNRQIAAEI 582
             T+  L+ G+ K  N + A E+
Sbjct: 558 LITYNTLLDGITKDCNSEEALEL 580



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 205/486 (42%), Gaps = 85/486 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ V     Y  L++++ K   FG    +++EMR +   P ++T  V +  M R     
Sbjct: 208 QPSVV----TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR-- 261

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--------FK 240
            V  A E L+ +  YG +PD   +  +L  LC     ++  +LF EM E+        F 
Sbjct: 262 -VDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 320

Query: 241 PSLRHF------------------------TSL----LYGWCKEGKLVEAKYVLVQMKDA 272
             +R F                        T+L    +   CK+G++ +A   L  M   
Sbjct: 321 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 380

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  PD + Y  +L G  +  +  DA ELLKEM RK C PN  ++   I  LC+   +E+A
Sbjct: 381 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQA 440

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                +M   GCE ++VTY  L++GFC   ++D   E+  SM  +   PN +TY  ++  
Sbjct: 441 TMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTG 497

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
               E L+   EL+ EM +  C P+V  +NV++   C+ G + EA+ +  +M     +P 
Sbjct: 498 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 557

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE----- 507
             ++  ++ G        EA E    +V  G+  +P   T  +++  L R  +VE     
Sbjct: 558 LITYNTLLDGITKDCNSEEALELLHGLVSNGV--SPDIVTYSSIIGVLSREDRVEEAIKM 615

Query: 508 ------------------------------MAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
                                          A D ++ +V+ GC  N   +   I  L +
Sbjct: 616 FHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLAN 675

Query: 538 NGHVKE 543
              +KE
Sbjct: 676 EDFLKE 681



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 178/362 (49%), Gaps = 8/362 (2%)

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR 244
           + A    +A  ++D     G  PD ++   L+  LC+     +AA++     ER   ++ 
Sbjct: 85  SPATTSPRAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVL-RAAERSGTAVD 143

Query: 245 HF--TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            F   +L+ G+C+ G+L  A+ ++  M  A   PD   Y  ++ G    G++ +A  LL 
Sbjct: 144 VFAYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSLLD 200

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M  +GC P+  +YTVL++A+C+     +A     EM   GC  ++VTY  +I+G C+  
Sbjct: 201 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 260

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           ++D   E L+ +   G  P+ ++Y  ++      +  E+  EL  EM +  C+P+   ++
Sbjct: 261 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 320

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           +++R  C+ G ++ A+ V  +M     +  T    ++++    QG + +A ++   M   
Sbjct: 321 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 380

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G   +P   +   +L  L RA++ E AK++   +V K C  N   +  +I  L   G ++
Sbjct: 381 G--CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIE 438

Query: 543 EA 544
           +A
Sbjct: 439 QA 440



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 185/424 (43%), Gaps = 73/424 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y  ++K L   +++  V  L  EM  EK  +     F +L+R F    MV
Sbjct: 278 QPDTVS----YTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMV 332

Query: 191 KKAIEVLDEMP-----------------------------------KYGCEPDEFVFGCL 215
           ++AI+VL++M                                     YGC PD   +  +
Sbjct: 333 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 392

Query: 216 LDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           L  LC+    ++A +L  EM R+   P+   F + +   C++G + +A  ++ QM + G 
Sbjct: 393 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 452

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFEL--------------------------------LK 302
           E +IV YN L++G+   G++  A EL                                L 
Sbjct: 453 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLA 512

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM +K C PN  ++ VL+   C+   M+EA     +M   GC  +++TY TL+ G  K  
Sbjct: 513 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 572

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
             +   E+L  ++  G+ P+ +TY  I+    +++ +EE +++   ++ +G  P    YN
Sbjct: 573 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 632

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++   CK      A++ +  M +    P   +++ ++ G   +  L E  +  +E+  R
Sbjct: 633 KILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 692

Query: 483 GLLS 486
           G+L+
Sbjct: 693 GVLN 696



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 35/337 (10%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A  L+     +G  P+    T LI+ LCR  +  +A R     ERSG   DV  Y TL++
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 357 GFCKSRKID--------------------------------RCYEILDSMIQRGILPNQL 384
           G+C+  ++D                                    +LD M+ RG  P+ +
Sbjct: 153 GYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVV 212

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY  ++ A  K     + +E++ EMR  GC P++  YNV+I   C+ G + +A    N +
Sbjct: 213 TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL 272

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
            +    P T S+  ++ G        +  E F EM+ +  +  P   T   L+    R  
Sbjct: 273 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM--PNEVTFDMLVRFFCRGG 330

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
            VE A  V   +   GC  N     I I+++   G V +A  +  +M      P   ++ 
Sbjct: 331 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 390

Query: 565 KLMRGLKKLYNRQIAAEIT-EKVRKMAAERQITFKMY 600
            +++GL +    + A E+  E VRK     ++TF  +
Sbjct: 391 TVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 427



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 5/245 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y AL+       +  +   L   M   KP  IT   +  L+    +A  +  A E+L EM
Sbjct: 459 YNALVNGFCVQGRVDSALELFYSM-PCKPNTIT---YTTLLTGLCNAERLDAAAELLAEM 514

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C P+   F  L+   C+   + EA +L ++M E    P+L  + +LL G  K+   
Sbjct: 515 LQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNS 574

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +L  +   G  PDIV Y++++   ++  ++ +A ++   ++  G  P A  Y  +
Sbjct: 575 EEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKI 634

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+    + A   F  M  +GC  + +TY TLI G      +    ++L  +  RG+
Sbjct: 635 LLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694

Query: 380 LPNQL 384
           L   L
Sbjct: 695 LNKNL 699


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 169/316 (53%), Gaps = 1/316 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           ++ IL+  +    M+ +A+E+ D+M + GC  D   +  +L+ LCK   + +A  LFDEM
Sbjct: 362 IYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEM 421

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            ER   P    FT+L++G CKEG + +A  +   M     +PDIV YN L+ G+ +  +M
Sbjct: 422 VERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEM 481

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A EL  EM  +   PN  SY +L+   C +  + EA R + EM R G +  +VT  T+
Sbjct: 482 EKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTV 541

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I G+C+S  + +  E L  MI  G+ P+ +TY  ++    K E +++   L+ +M   G 
Sbjct: 542 IKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGL 601

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PDV  YNV++   C+ G ++EA  +  +M    + P   ++  +++G++ Q  L EA  
Sbjct: 602 QPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFR 661

Query: 475 YFKEMVGRGLLSAPQY 490
           +  EM+ RG +    +
Sbjct: 662 FHDEMLQRGFVPDDDF 677



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 208/432 (48%), Gaps = 8/432 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI +  +    G  + +M  M  +  KP L T    +  + +    R V+ A  V +
Sbjct: 223 YNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCK--KGRYVR-AKGVFN 279

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  LL   C+N++  EA  +F +M  R   P L  F+SL+    + G
Sbjct: 280 EMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNG 339

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A      MK +G  PD V+Y  L++GY + G M++A E+  +M  +GC  +  +Y 
Sbjct: 340 HLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYN 399

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  LC+ + + +AN  F EM   G   D  T+TTLI G CK   + +   +   M Q+
Sbjct: 400 TILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQK 459

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I P+ +TY  ++    K  E+E+  EL  EM      P+  +Y +++   C LG + EA
Sbjct: 460 NIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEA 519

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +W+EM    + P   +   ++ G+   G L +A E+  +M+  G+   P   T   L+
Sbjct: 520 FRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGV--GPDSITYNTLI 577

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N  ++ + ++ A  + + + TKG + +V  + + ++     G ++EA      M++  + 
Sbjct: 578 NGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGID 637

Query: 558 PQPDTFAKLMRG 569
           P   T+  L+ G
Sbjct: 638 PDRSTYTTLING 649



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 161/324 (49%), Gaps = 2/324 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L+  + +  KL E       ++  GF   I   N+LL G  +MG +  A+E+  E+ 
Sbjct: 118 FDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIA 177

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           R G + N  +  +++ ALC+  K+++     ++ME+ G  AD+VTY TLI+ +C+   + 
Sbjct: 178 RSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLG 237

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             +E+++SM  +G+ P   TY  ++    KK        +  EM  IG  PD + YN ++
Sbjct: 238 EAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLL 297

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             +C+     EA +++++M    +SP   SF  ++      G L +A  YF++M   GL+
Sbjct: 298 VESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLV 357

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P       L+N   R   +  A ++   ++ +GC L+V A+   ++ L     + +A 
Sbjct: 358 --PDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADAN 415

Query: 546 SYCLDMMDADVMPQPDTFAKLMRG 569
           +   +M++  V+P   TF  L+ G
Sbjct: 416 ALFDEMVERGVVPDFCTFTTLIHG 439



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 193/423 (45%), Gaps = 9/423 (2%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++RR   +R+  + +E L  M    C  D  VF  L+ +  +   + E    F  +R + 
Sbjct: 89  MIRRSGVSRV--EIVESLISMSS-TCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKG 145

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F  S+    SLL G  K G +  A  V  ++  +G E ++   N +++   +  K+ D  
Sbjct: 146 FLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVK 205

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
             L +M +KG   +  +Y  LI A CR   + EA      M   G +  + TY  +I+G 
Sbjct: 206 PFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGL 265

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK  +  R   + + M+  G+ P+  TY  +++   +     E  ++  +M   G  PD+
Sbjct: 266 CKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDL 325

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
            +++ +I ++ + G L +A+  + +M+ + L P    + ++++G+   G + EA E   +
Sbjct: 326 ISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDK 385

Query: 479 MVGRG-LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           M+ +G  L    Y T   +LN L + + +  A  ++  +V +G   +   +T  IH    
Sbjct: 386 MLEQGCALDVVAYNT---ILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCK 442

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAAERQIT 596
            G++ +A S    M   ++ P   T+  L+ G  K    + A E+  E + +      I+
Sbjct: 443 EGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHIS 502

Query: 597 FKM 599
           + +
Sbjct: 503 YAI 505


>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
 gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/539 (25%), Positives = 228/539 (42%), Gaps = 108/539 (20%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WASK PN+ HS   YRALI  L   R+F  V  L++EM K         +F+ ++R  
Sbjct: 35  FEWASKLPNFTHSQSTYRALIHKLLTFRRFHTVQHLLDEMPKSIGLPPDESIFLTIIRGL 94

Query: 185 ASARMVKKAIEVLDEMPKYGCEP-----------------------------------DE 209
             ARM++  I+VLD + +YG  P                                   D+
Sbjct: 95  GRARMIRDVIKVLDLVTRYGKNPSLKIFNSILDVLVKEDIDLARKFYRKKMMGAGIQGDD 154

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY----------------- 251
           + +G L+  LC  + + E  KL   ++ R  KP++  + +LL+                 
Sbjct: 155 YTYGILMKGLCLTNRIGEGFKLLQVIKSRGLKPNVVIYNTLLHALCNNGKVGRARSLMNE 214

Query: 252 --------------GWCKEGKLVEAKYVLVQMKDAGFEPDIVV----------------- 280
                         G+CKE   V+A  +L +    GF PD+V                  
Sbjct: 215 IKEPNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVTKVVEILCNVGRVTEA 274

Query: 281 ------------------YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
                             +N L+ G+ + GK+     LLKEM RKGC PNA++Y  LI  
Sbjct: 275 VEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLPNADTYNALISG 334

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILP 381
            C    +E A   F +M+  G   + VT+ TLI G     + +  ++IL+ M + RG+  
Sbjct: 335 FCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGFKILELMEETRGVCG 394

Query: 382 NQLT-YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
             ++ Y  ++    +K  L E +E + +M  +   P   + ++ I   C+ G ++EA  V
Sbjct: 395 GSISPYNSVLYGLYRKNMLNEALEFLMKMENL--FPRAVDRSLRILGFCEEGAIQEAKRV 452

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           +++M      P    +  ++HGF  +GC+ EA E   EMV  G    P   T  AL++  
Sbjct: 453 YDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYF--PVASTFNALISGF 510

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            R  K   A  +   +V +GC  +  +++  I +L      ++A S  L M++  + P 
Sbjct: 511 CRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKAASLLLQMVENGITPD 569



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 165/384 (42%), Gaps = 18/384 (4%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLIT-TEVFVI 179
           R  M   K+PN V     +  LI    K   F     L+E+       P ++T T+V  I
Sbjct: 209 RSLMNEIKEPNDV----TFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVTKVVEI 264

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L     +   V +A+E+L+ +   G   D      L+   CK   VK    L  EM R+ 
Sbjct: 265 L----CNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKG 320

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P+   + +L+ G+C+ G L  A  +   MK  G   + V ++ L+ G    G+  D F
Sbjct: 321 CLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGF 380

Query: 299 ELLKEMR--RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           ++L+ M   R  C  + + Y  ++  L R   + EA    ++ME     A  V  +  I 
Sbjct: 381 KILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRA--VDRSLRIL 438

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           GFC+   I     + D M   G +P+ L Y  ++    ++  + E +ELM EM  +G  P
Sbjct: 439 GFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFP 498

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
             S +N +I   C+LG+   A+ +  +M      P T S+  ++     +    +A    
Sbjct: 499 VASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKAASLL 558

Query: 477 KEMVGRGLLSAPQYGTLKALLNSL 500
            +MV  G+   P Y    +L + L
Sbjct: 559 LQMVENGI--TPDYLIWNSLFHCL 580



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           V+  L+  F     V++A+E+++EM   G  P    F  L+   C+      A KL ++M
Sbjct: 467 VYDCLIHGFCQEGCVREALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKLLEDM 526

Query: 236 RERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
             R   P    ++ L+   C++    +A  +L+QM + G  PD +++N+L    +Q
Sbjct: 527 VGRGCVPDTGSYSPLIDALCRKKSFQKAASLLLQMVENGITPDYLIWNSLFHCLSQ 582


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 206/443 (46%), Gaps = 10/443 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +  +  A   L+  M    P       +  L+R       V  A+ +LD+M
Sbjct: 108 YNTLVAGYCRYGRLDAARRLIASM----PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDM 163

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C+P    +  LL+A+CK+S   +A K+ DEMR +   P++  +  ++ G C+E ++
Sbjct: 164 LRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRV 223

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+ +L ++   GF+PD V Y  +L G     +  D   L  EM    C PN  ++ +L
Sbjct: 224 DDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDML 283

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++  CR   +E A      M   GC A+      +I+  CK  ++D  +E L++M   G 
Sbjct: 284 VRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGC 343

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++    +    E+  EL+ EM +  C P+   +N  I + C+ G + +A+ 
Sbjct: 344 SPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAIL 403

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M     S G  ++  +V+GF  QG +  A E F       L   P   T   LL  
Sbjct: 404 LIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFN-----SLPCEPNTITYTTLLTG 458

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L  A++++ A ++ + ++   C LNV  + + +      G V+EA      MM+    P 
Sbjct: 459 LCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPN 518

Query: 560 PDTFAKLMRGLKKLYNRQIAAEI 582
             TF  L+ G+ +  N + A E+
Sbjct: 519 LITFNTLLDGITEDCNSEEALEL 541



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 178/365 (48%), Gaps = 6/365 (1%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +RR  +   + +A  +++     G  PD ++   L+  LC+     +AA++         
Sbjct: 42  LRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGA 101

Query: 241 P-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           P  +  + +L+ G+C+ G+L  A+ ++  M      PD   Y  L+ G    G++ DA  
Sbjct: 102 PVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALS 158

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           LL +M R+ C P+  +YTVL++A+C+     +A +   EM   GC  ++VTY  +I+G C
Sbjct: 159 LLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMC 218

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           +  ++D   +IL+ +   G  P+ ++Y  ++      +  E+   L  EM +  CVP+  
Sbjct: 219 REDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEV 278

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +++++R  C+ G ++ A+ V + M     +  T    ++++    QG + +A E+   M
Sbjct: 279 TFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNM 338

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G   +P   +   +L  L RA + E AK++ + +V K C  N   +  +I  L   G
Sbjct: 339 GSYG--CSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKG 396

Query: 540 HVKEA 544
            + +A
Sbjct: 397 LIDQA 401



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 189/429 (44%), Gaps = 83/429 (19%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     Y  ++K L   +++  V  L  EM +    P  +T   F +L+R F    
Sbjct: 239 QPDTVS----YTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVT---FDMLVRFFCRGG 291

Query: 189 MVKKAIEVLDEMPK-----------------------------------YGCEPDEFVFG 213
           MV++AIEVLD M +                                   YGC PD   + 
Sbjct: 292 MVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYT 351

Query: 214 CLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
            +L  LC+    ++A +L +EM R+   P+   F + +   C++G + +A  ++ QM + 
Sbjct: 352 TVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEY 411

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G    IV YN L++G+   G++  A EL   +    C+PN  +YT L+  LC  E+++ A
Sbjct: 412 GCSVGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAA 468

Query: 333 ---------------------------NRAFVE--------MERSGCEADVVTYTTLISG 357
                                       + FVE        M   GC  +++T+ TL+ G
Sbjct: 469 AELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDG 528

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
             +    +   E+L  ++ +GI  + +TY  I+    +++ +EE V++   ++ +G  P 
Sbjct: 529 ITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPK 588

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              YN ++   CK  E   A++ +  M + S  P   ++V+++ G   +G L EA     
Sbjct: 589 AVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLS 648

Query: 478 EMVGRGLLS 486
           E+  RG+LS
Sbjct: 649 ELCSRGVLS 657



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 6/343 (1%)

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  ++ +    G  PD+ +   L+    + G+ +DA  +L+     G   +  +Y  
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+   CR  +++ A R    M       D  TYT LI G C   ++     +LD M++R 
Sbjct: 111 LVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +TY  ++ A  K     + ++++ EMR  GC P++  YNV+I   C+   + +A 
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDAR 227

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + N + +    P T S+  ++ G        +    F EMV    +  P   T   L+ 
Sbjct: 228 QILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCV--PNEVTFDMLVR 285

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R   VE A +V   +   GC  N     I I+S+   G V +A  +  +M      P
Sbjct: 286 FFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSP 345

Query: 559 QPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKMY 600
              ++  +++GL +    + A E + E VRK     ++TF  +
Sbjct: 346 DTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTF 388



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 148/388 (38%), Gaps = 82/388 (21%)

Query: 75  EKIFRILKKFHSRLPKLELALQ------HSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           E  F +L +F  R   +E A++        G      L   VIN     G +    + + 
Sbjct: 277 EVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVD-DAFEFL 335

Query: 129 SKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRF 184
           +   +Y  S D   Y  ++K L +  ++     L+ EM ++   P  +T   F+ ++   
Sbjct: 336 NNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICIL--- 392

Query: 185 ASARMVKKAIEVLDEMPKYGC--------------------------------EPDEFVF 212
               ++ +AI ++++MP+YGC                                EP+   +
Sbjct: 393 CQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITY 452

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
             LL  LC    +  AA+L  EM +   P ++  F  L+  +C++G + EA  ++ QM +
Sbjct: 453 TTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMME 512

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD--------------------- 310
            G  P+++ +N LL G  +     +A ELL  +  KG                       
Sbjct: 513 HGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEE 572

Query: 311 --------------PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
                         P A  Y  ++ ALC+  + + A   F  M  + C  +  TY  LI 
Sbjct: 573 AVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIE 632

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQL 384
           G  +   +     +L  +  RG+L   L
Sbjct: 633 GLAREGLLKEARYVLSELCSRGVLSKSL 660


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 208/393 (52%), Gaps = 11/393 (2%)

Query: 136 HSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           HS DV  + +++++L      G +   M+  R+       + +F IL+     A  + +A
Sbjct: 136 HSPDVVTHSSIVQALCNT---GNLSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEA 192

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
            ++++EM + G  PD   +  L+D LCK+  ++EA +L + M +R  +P+L  + +L+YG
Sbjct: 193 RQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYG 252

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +CK G    A  ++ +M  +G  PD+V +N+L+SG+ Q  K+  A E+L  M++  C PN
Sbjct: 253 YCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPN 312

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y VLI  LC   +  EA     EM+  G   D++TY +LI  FC++ +I++ ++I +
Sbjct: 313 LVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQN 372

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M++RG++P+ ++Y  + +A  K E  +E   L+  M   G +P++  +N ++   C   
Sbjct: 373 LMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSR 432

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            L EA ++   M      P   ++ V+V G    G + +A E    MV  G+   P   +
Sbjct: 433 RLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGI--QPLVSS 490

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIV---TKGCE 522
              ++++L R  K ++A   +  +V   +K C+
Sbjct: 491 SGTIVHTLAREGKQDLALHYFDQVVAAESKACD 523



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/534 (25%), Positives = 243/534 (45%), Gaps = 9/534 (1%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA-- 128
           + DV  I  IL     R P+ E AL      L P    RV+    D  ++   ++ W   
Sbjct: 2   ASDVSGIVAILTSVGDR-PEAEAALAKYSRNLVPNTVGRVLQVIKDV-DVSLFFFRWVTR 59

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           S +   +H+      L+++L K R+    + +  +    +        +  L+  F  A 
Sbjct: 60  SHRGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAG 119

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            +++A ++L EM + G  PD      ++ ALC   ++  A + F E  E   P    F  
Sbjct: 120 DMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE-CAPDSVLFNI 178

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++G CK  +L EA+ ++ +M + G  PD+V YN+L+ G  +  +M +A +LL+ M ++ 
Sbjct: 179 LVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRK 238

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  +Y  LI   C+      A++    M +SG   DVVT+ +LISGFC+  KID+  
Sbjct: 239 VRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKAC 298

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+L  M +    PN +TY  ++          E  EL+ EM   G +PD+  YN +I + 
Sbjct: 299 EVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIF 358

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+  ++++A  + N M    + P   S+  +    L      EA      M   G +  P
Sbjct: 359 CRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAI--P 416

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  +L+  L  +++++ A+ + + +   GC+     + + +  L   G V +A    
Sbjct: 417 NLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVL 476

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKR 602
           + M+   + P   +   ++  L +   + +A    ++V  +AAE +     Y++
Sbjct: 477 VMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQV--VAAESKACDPSYQK 528


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 204/426 (47%), Gaps = 12/426 (2%)

Query: 94  ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ-PNYVHSYDVYRALIKSLSKMR 152
           AL    +   P L  +V+ R  + G    +++    +  P+Y HS   +   +   ++MR
Sbjct: 59  ALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMR 118

Query: 153 KFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
            F + WAL+  MR  +  P   + +   IL  R+AS     +A+     M ++G   D  
Sbjct: 119 DFNSAWALVGRMRSLRLGP---SPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLH 175

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
            F  LLD LCK+  V+ A  L   +  RF+P    +  L  G+C   +   A  VL +M 
Sbjct: 176 SFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMV 235

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
             G EP +V YN +L GY +  ++ +A+E   EM+++ C+ +  +YT +I        ++
Sbjct: 236 QRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVK 295

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI-LPNQLTYLHI 389
           +A R F EM + G   +V TY  LI   CK   ++    + + M + G+ +PN +TY  +
Sbjct: 296 KAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVV 355

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +       ++E  +  M  M + G    V  YNVVIR  C  GE+++A+ V+ +M   S 
Sbjct: 356 IRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSC 415

Query: 450 SPGTDSFVVMVHGFLGQG---CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
            P  D++ V++     +     L+ A +   +MV RG L  P+  T   +LN L+     
Sbjct: 416 LPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFL--PRKFTFNRVLNGLVITGNQ 473

Query: 507 EMAKDV 512
           + AK++
Sbjct: 474 DFAKEI 479



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M + G   D+ ++N ++ + CK   ++ A ++   +  +   P T ++ ++ +G+    C
Sbjct: 165 MAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTL-TSRFRPDTVTYNILANGY----C 219

Query: 469 LIE----ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           LI+    A    KEMV RG+   P   T   +L    R+ +++ A + +  +  + CE++
Sbjct: 220 LIKRTPMALRVLKEMVQRGI--EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEID 277

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           V  +T  IH     G VK+A     +M+   V+P   T+  L++ L K
Sbjct: 278 VVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCK 325



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 7/205 (3%)

Query: 110 VINRCGDAGNL--GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
           VI+  G AG++    R +    K+   V +   Y ALI+ L K         + EEM +E
Sbjct: 284 VIHGFGVAGDVKKAKRVFHEMVKE-GVVPNVATYNALIQVLCKKDSVENAVVVFEEMARE 342

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
              +     + +++R       +++A+  ++ M ++G       +  ++   C    V++
Sbjct: 343 GVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEK 402

Query: 228 AAKLFDEMRE-RFKPSLRHFTSLLYGWC---KEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           A ++F +M +    P+L  +  L+       K   LV A  +L+ M D GF P    +N 
Sbjct: 403 ALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNR 462

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKG 308
           +L+G    G    A E+L+   R G
Sbjct: 463 VLNGLVITGNQDFAKEILRMQSRCG 487


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 207/418 (49%), Gaps = 7/418 (1%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVI 179
           Y Y + ++   N   +   +  +IK+L K+   G V   +E  R   EK  L     +  
Sbjct: 171 YDYVVNSNMNMNISPNGLSFNLVIKALCKL---GFVDRAIEVFRGMPEKKCLPDGYTYCT 227

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           LM        + +A+ +LDEM   GC P   ++  L+D LCK   +    KL D M  + 
Sbjct: 228 LMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKG 287

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P+   + +L++G C +GKL +A  +L +M  +   P+ V Y  L++G  +  +  D  
Sbjct: 288 CFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGA 347

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            LL  M  +G   N + Y+VLI  L +  K EEA   + +M   GC  ++V Y+ +I G 
Sbjct: 348 RLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGL 407

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+  K +   EIL+ MI  G LPN  TY  +M    K    EE +++  EM + GC  + 
Sbjct: 408 CREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNE 467

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y+V+I   C +G +KEA+ VW++M    + P T ++  M+ G  G G +  A + + E
Sbjct: 468 FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHE 527

Query: 479 MVGR-GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           M+ +    S P   T   LL+ L   + V  A D+ +C++ +GC+ +V     ++++L
Sbjct: 528 MLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTL 585



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 197/449 (43%), Gaps = 9/449 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A K  ++        ++I++ + +  F +V  L+  +R E  ++I    F+++ R +  A
Sbjct: 67  APKMGSFKLGDSTLSSMIENYANLGDFASVEKLLSRIRLEN-RVIIERSFIVVFRAYGKA 125

Query: 188 RMVKKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-----EMRERFKP 241
            + +KA+++   M  ++ C+     F  +L+ +          + +D      M     P
Sbjct: 126 HLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           +   F  ++   CK G +  A  V   M +    PD   Y  L+ G  +  ++ +A  LL
Sbjct: 186 NGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLL 245

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            EM+ +GC P+   Y VLI  LC+   +    +    M   GC  + VTY TLI G C  
Sbjct: 246 DEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLK 305

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            K+D+   +L+ M+    +PN +TY  ++    K+    +   L+  M + G   +   Y
Sbjct: 306 GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIY 365

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           +V+I    K G+ +EA+ +W +M      P    +  ++ G   +G   EA E    M+ 
Sbjct: 366 SVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMIS 425

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            G L  P   T  +L+    +    E A  VW  +   GC  N + +++ I  L   G V
Sbjct: 426 SGCL--PNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRV 483

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           KEA      M+   + P    ++ +++GL
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSMIKGL 512



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 27/266 (10%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN V    VY A+I  L +  K      ++  M      P + T   +  LM+ F    
Sbjct: 394 RPNIV----VYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYT---YSSLMKGFFKTG 446

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247
           + ++AI+V  EM + GC  +EF +  L+D LC    VKEA  ++ +M     KP    ++
Sbjct: 447 LSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYS 506

Query: 248 SLLYGWCKEGKLVEAKYVLVQM---KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           S++ G C  G +  A  +  +M   ++   +PD+V YN LL G      ++ A +LL  M
Sbjct: 507 SMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCM 566

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             +GCDP+  +    +  L       E  R+F+E               L++   K +++
Sbjct: 567 LDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLE--------------ELVARLLKRQRV 612

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIM 390
               +I++ M+ + + P   T+  I+
Sbjct: 613 SGACKIVEVMLGKYLAPKTSTWAMIV 638


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 210/443 (47%), Gaps = 10/443 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +  +  A   L+  M    P       +  ++R       V +A+ +LD+M
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 171

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC+P    +  LL+A+CK++   +A ++ DEMR +   P++  +  ++ G C+EG++
Sbjct: 172 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRV 231

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+  L ++   GF+PD V Y  +L G     +  D  EL  EM  K C PN  ++ +L
Sbjct: 232 DDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 291

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++  CR   +E A +   +M   GC A+      +I+  CK  ++D  ++ L++M   G 
Sbjct: 292 VRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGC 351

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++    + E  E+  EL+ EM +  C P+   +N  I + C+ G +++A  
Sbjct: 352 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 411

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M          ++  +V+GF  QG +  A E F  M  +     P   T   LL  
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK-----PNTITYTTLLTG 466

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L  A++++ A ++ + ++ K C  NV  + + +      G + EA      MM+    P 
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 526

Query: 560 PDTFAKLMRGLKKLYNRQIAAEI 582
             T+  L+ G+ K  N + A E+
Sbjct: 527 LITYNTLLDGITKDCNSEEALEL 549



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 205/486 (42%), Gaps = 85/486 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ V     Y  L++++ K   FG    +++EMR +   P ++T  V +  M R     
Sbjct: 177 QPSVV----TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR-- 230

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--------FK 240
            V  A E L+ +  YG +PD   +  +L  LC     ++  +LF EM E+        F 
Sbjct: 231 -VDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289

Query: 241 PSLRHF------------------------TSL----LYGWCKEGKLVEAKYVLVQMKDA 272
             +R F                        T+L    +   CK+G++ +A   L  M   
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  PD + Y  +L G  +  +  DA ELLKEM RK C PN  ++   I  LC+   +E+A
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQA 409

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                +M   GCE ++VTY  L++GFC   ++D   E+  SM  +   PN +TY  ++  
Sbjct: 410 TMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTG 466

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
               E L+   EL+ EM +  C P+V  +NV++   C+ G + EA+ +  +M     +P 
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 526

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK-- 510
             ++  ++ G        EA E    +V  G+  +P   T  +++  L R  +VE A   
Sbjct: 527 LITYNTLLDGITKDCNSEEALELLHGLVSNGV--SPDIVTYSSIIGVLSREDRVEEAIKM 584

Query: 511 ---------------------------------DVWSCIVTKGCELNVYAWTIWIHSLFS 537
                                            D ++ +V+ GC  N   +   I  L +
Sbjct: 585 FHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLAN 644

Query: 538 NGHVKE 543
              +KE
Sbjct: 645 EDFLKE 650



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 185/382 (48%), Gaps = 8/382 (2%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R E P   +       +RR  +   + +A  ++D     G  PD ++   L+  LC+   
Sbjct: 34  RPEAPSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGR 93

Query: 225 VKEAAKLFDEMRERFKPSLRHF--TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
             +AA++     ER   ++  F   +L+ G+C+ G+L  A+ ++  M  A   PD   Y 
Sbjct: 94  TSDAARVL-RAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYT 149

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            ++ G    G++ +A  LL +M  +GC P+  +YTVL++A+C+     +A     EM   
Sbjct: 150 PIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK 209

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  ++VTY  +I+G C+  ++D   E L+ +   G  P+ ++Y  ++      +  E+ 
Sbjct: 210 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 269

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            EL  EM +  C+P+   +++++R  C+ G ++ A+ V  +M     +  T    ++++ 
Sbjct: 270 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 329

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              QG + +A ++   M   G   +P   +   +L  L RA++ E AK++   +V K C 
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYG--CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 523 LNVYAWTIWIHSLFSNGHVKEA 544
            N   +  +I  L   G +++A
Sbjct: 388 PNEVTFNTFICILCQKGLIEQA 409



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 185/424 (43%), Gaps = 73/424 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y  ++K L   +++  V  L  EM  EK  +     F +L+R F    MV
Sbjct: 247 QPDTVS----YTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMV 301

Query: 191 KKAIEVLDEMP-----------------------------------KYGCEPDEFVFGCL 215
           ++AI+VL++M                                     YGC PD   +  +
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 216 LDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           L  LC+    ++A +L  EM R+   P+   F + +   C++G + +A  ++ QM + G 
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFEL--------------------------------LK 302
           E +IV YN L++G+   G++  A EL                                L 
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLA 481

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM +K C PN  ++ VL+   C+   M+EA     +M   GC  +++TY TL+ G  K  
Sbjct: 482 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 541

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
             +   E+L  ++  G+ P+ +TY  I+    +++ +EE +++   ++ +G  P    YN
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 601

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++   CK      A++ +  M +    P   +++ ++ G   +  L E  +  +E+  R
Sbjct: 602 KILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 661

Query: 483 GLLS 486
           G+L+
Sbjct: 662 GVLN 665



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 153/343 (44%), Gaps = 6/343 (1%)

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  ++ +    G  PD+ +   L+    + G+ +DA  +L+   R G   +  +Y  
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+   CR  +++ A R    M  +    D  TYT +I G C   ++     +LD M+ RG
Sbjct: 119 LVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +TY  ++ A  K     + +E++ EMR  GC P++  YNV+I   C+ G + +A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
              N + +    P T S+  ++ G        +  E F EM+ +  +  P   T   L+ 
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM--PNEVTFDMLVR 293

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R   VE A  V   +   GC  N     I I+++   G V +A  +  +M      P
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEIT-EKVRKMAAERQITFKMY 600
              ++  +++GL +    + A E+  E VRK     ++TF  +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 396



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 5/245 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y AL+       +  +   L   M   KP  IT   +  L+    +A  +  A E+L EM
Sbjct: 428 YNALVNGFCVQGRVDSALELFYSM-PCKPNTIT---YTTLLTGLCNAERLDAAAELLAEM 483

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C P+   F  L+   C+   + EA +L ++M E    P+L  + +LL G  K+   
Sbjct: 484 LQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNS 543

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +L  +   G  PDIV Y++++   ++  ++ +A ++   ++  G  P A  Y  +
Sbjct: 544 EEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKI 603

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+    + A   F  M  +GC  + +TY TLI G      +    ++L  +  RG+
Sbjct: 604 LLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663

Query: 380 LPNQL 384
           L   L
Sbjct: 664 LNKNL 668


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 221/452 (48%), Gaps = 18/452 (3%)

Query: 147 SLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
           +++++R+ F A   ++   R   P ++T   +  L++       + +A  +   M K GC
Sbjct: 116 NVNRLREGFAAFAGILR--RGYSPNIVT---YNTLIKGLCMEHRISEATRLFLRMQKLGC 170

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-------KPSLRHFTSLLYGWCKEGK 258
            PD   +G L+  LC   ++  A KL  EM           KP++  +  ++ G CK G+
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             EAK +  +MK  G  P I+ YN+L+ G+   GK  ++  LL EM  +G  P+  ++ V
Sbjct: 231 EDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNV 290

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC+  K+ EA +    M  SG   D+VTY +LI GFC    ++   E+  SM  +G
Sbjct: 291 LIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKG 350

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ ++Y  ++  + K  ++EE ++L  EM  +G  P+V  Y+ +++     G++ +A 
Sbjct: 351 CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAK 410

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +++ M+A  ++  + ++ + + G     CL EA + F E+         +   L  L++
Sbjct: 411 KLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNF--KLEIENLNCLID 468

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A K+E A +++  +  +G E NV  +TI IH     G V +A      M      P
Sbjct: 469 GLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTP 528

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
              T+  LMRG    Y      E+ + + +MA
Sbjct: 529 DIITYNTLMRG---FYESNKLEEVVQLLHRMA 557



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 215/443 (48%), Gaps = 14/443 (3%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-M 235
           F  L+   A  +   +   + ++M   G   D      LL+ LC  + ++E    F   +
Sbjct: 72  FNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGIL 131

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R  + P++  + +L+ G C E ++ EA  + ++M+  G  PD+V Y  L+ G    G + 
Sbjct: 132 RRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNIN 191

Query: 296 DAFELLKEMRRK------GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
            A +L +EM          C PN  +Y +++  LC++ + +EA + F EM+  G    ++
Sbjct: 192 IALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSII 251

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y +LI GFC + K +    +LD M+ +G+ P+ +T+  ++    K+ ++ E  +L+G M
Sbjct: 252 SYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 311

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G VPD+  YN +I   C +G+L  A  ++  M +    P   S+ V+++G+     +
Sbjct: 312 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 371

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA + + EM+  G    P   T  +LL  +  A KV+ AK ++S +   G   N Y + 
Sbjct: 372 EEAMKLYNEMLLVG--KRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 429

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           I++  L  N  + EA     ++  ++   + +    L+ GL K    + A E+ EK+   
Sbjct: 430 IFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE 489

Query: 590 AAERQ-ITFKM----YKRRGERD 607
             E   +T+ +    + R G+ D
Sbjct: 490 GHEPNVVTYTIMIHGFCREGQVD 512



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 45/368 (12%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN +     Y  ++  L K+ +      L EEM+ +   P +I+   +  L+  F  A 
Sbjct: 212 KPNVI----TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIIS---YNSLIHGFCCAG 264

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             +++  +LDEM   G +PD   F  L+D LCK   V EA KL   M E    P L  + 
Sbjct: 265 KWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYN 324

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM---------------- 291
           SL+ G+C  G L  A+ + V M   G EPD++ YN L++GY++                 
Sbjct: 325 SLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLV 384

Query: 292 -------------------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
                              GK+ DA +L   M+  G   N+ +Y + +  LC+ + + EA
Sbjct: 385 GKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEA 444

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            + F E++ S  + ++     LI G CK+ K++  +E+ + +   G  PN +TY  ++  
Sbjct: 445 MKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHG 504

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             ++ ++++   L+ +M   GC PD+  YN ++R   +  +L+E V + + M    +SP 
Sbjct: 505 FCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPD 564

Query: 453 TDSFVVMV 460
             +  ++V
Sbjct: 565 AITCSIVV 572



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 170/366 (46%), Gaps = 17/366 (4%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           MR    PSL  F  LL G  K     +   +  QM+ +G   D    N LL+    + ++
Sbjct: 61  MRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRL 120

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            + F     + R+G  PN  +Y  LI+ LC   ++ EA R F+ M++ GC  DVVTY TL
Sbjct: 121 REGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTL 180

Query: 355 ISGFCKSRKIDRCYEILDSMI------QRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           I G C +  I+   ++   M+      +    PN +TY  I+    K    +E  +L  E
Sbjct: 181 IKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEE 240

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M+  G +P + +YN +I   C  G+ +E+  + +EM    L P   +F V++     +G 
Sbjct: 241 MKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGK 300

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           +IEA +    M+  G++  P   T  +L+        +  A++++  + +KGCE +V ++
Sbjct: 301 VIEAKKLLGVMIESGIV--PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 358

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIA 579
            + I+       V+EA     +M+     P   T+  L++G+         KKL++   A
Sbjct: 359 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 418

Query: 580 AEITEK 585
             I E 
Sbjct: 419 HGIAEN 424



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 45/314 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     +  LI +L K  K      L+  M +    P L+T   +  L+  F    
Sbjct: 282 QPDMV----TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVT---YNSLIEGFCMVG 334

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFT 247
            +  A E+   MP  GCEPD   +  L++   K   V+EA KL++EM    K P++  + 
Sbjct: 335 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 394

Query: 248 SLLYG-----------------------------------WCKEGKLVEAKYVLVQMKDA 272
           SLL G                                    CK   L EA  +  ++K +
Sbjct: 395 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSS 454

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
            F+ +I   N L+ G  + GK+  A+EL +++  +G +PN  +YT++I   CR  ++++A
Sbjct: 455 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 514

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
           N    +ME +GC  D++TY TL+ GF +S K++   ++L  M Q+ + P+ +T   ++  
Sbjct: 515 NVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDM 574

Query: 393 HEKKEELEECVELM 406
             K E+ +EC+ L+
Sbjct: 575 LSKDEKYQECLHLL 588



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 128/282 (45%), Gaps = 8/282 (2%)

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           T A      M R    P+ +S+  L+  L +++   +    + +M  SG  +D  T   L
Sbjct: 51  THALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNIL 110

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ++  C   ++   +     +++RG  PN +TY  ++     +  + E   L   M+K+GC
Sbjct: 111 LNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGC 170

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEM------EAASLSPGTDSFVVMVHGFLGQGC 468
            PDV  Y  +I+  C  G +  A+ +  EM         +  P   ++ ++V G    G 
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
             EA + F+EM  +G++  P   +  +L++    A K E +K +   ++ +G + ++  +
Sbjct: 231 EDEAKQLFEEMKTQGMI--PSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTF 288

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            + I +L   G V EA      M+++ ++P   T+  L+ G 
Sbjct: 289 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 226/474 (47%), Gaps = 9/474 (1%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            ++EM  +         F  L+     A  VK AIE++D M + G +PD + +  ++  L
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           CK   VKEA +  D+M  R   P+   + +L+   CKE ++ EA  +   +   G  PD+
Sbjct: 341 CKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             +N+L+ G         A EL +EMR KGC+P+  +Y +LI +LC   K++EA     +
Sbjct: 401 CTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ 460

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME SGC   V+TY TLI GFCK+ KI    EI D M   G+  N +TY  ++    K   
Sbjct: 461 MELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRR 520

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +E+  +LM +M   G  PD   YN ++   C+ G++K+A ++   M +    P   ++  
Sbjct: 521 VEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT 580

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G    G +  A +  + +  +G+   P       ++  L R +K   A +++  ++ 
Sbjct: 581 LISGLCKAGRVEVASKLLRSIQMKGIALTPH--AYNPVIQGLFRKRKTTEAINLFREMLE 638

Query: 519 KG-CELNVYAWTIWIHSLFS-NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
           +     +  ++ I    L +  G ++EA  + +++++   +P+  +   L  GL  L   
Sbjct: 639 QNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSME 698

Query: 577 QIAAEITEKVRKMA--AERQITF--KMYKRRGERDLKEKAKKQVDGRKRRARQR 626
           +   ++   V + A  +E +++    + K R  +D        +D R+ R   R
Sbjct: 699 ETLVKLVNMVMQKARFSEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTYR 752



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 221/489 (45%), Gaps = 57/489 (11%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE------ 209
           +VW +       KP + T   F +L++    A  ++ AI +L++MP YG  PDE      
Sbjct: 181 SVWGI-------KPDVST---FNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTI 230

Query: 210 --------------------FVFGC---------LLDALCKNSSVKEAAKLFDEM--RER 238
                                 FGC         ++   CK   V++A     EM  ++ 
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P    F +L+ G CK G +  A  ++  M   G++PD+  YN+++SG  ++G++ +A 
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E L +M  + C PN  +Y  LI  LC+  ++EEA      +   G   DV T+ +LI G 
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C +R      E+ + M  +G  P++ TY  ++ +   K +L+E + ++ +M   GC   V
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   CK  +++EA  +++EME   +S  + ++  ++ G      + +A +   +
Sbjct: 471 ITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQ 530

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  G    P   T  +LL    R   ++ A D+   + + GCE ++  +   I  L   
Sbjct: 531 MIMEG--QKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM-----AAER 593
           G V+ A      +    +   P  +  +++G   L+ ++   E     R+M     AA  
Sbjct: 589 GRVEVASKLLRSIQMKGIALTPHAYNPVIQG---LFRKRKTTEAINLFREMLEQNEAAPD 645

Query: 594 QITFKMYKR 602
            +++++  R
Sbjct: 646 AVSYRIVFR 654



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/538 (22%), Positives = 237/538 (44%), Gaps = 76/538 (14%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           R +  ASK+PN+     +Y  ++  L +   F  +  ++E+M+    ++ T+  F+IL+ 
Sbjct: 68  RLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSP-FLILIE 126

Query: 183 RFASARMVKKAIEVLD------------------------------------EMPKYGCE 206
            +A   +  + + V+                                     +M  +G +
Sbjct: 127 SYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIK 186

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL--------------- 250
           PD   F  L+ ALC+   ++ A  + ++M      P  + FT+++               
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRI 246

Query: 251 --------------------YGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYA 289
                               +G+CKEG++ +A   + +M +  GF PD   +N L++G  
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G +  A E++  M ++G DP+  +Y  +I  LC++ +++EA     +M    C  + V
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTV 366

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY TLIS  CK  +++   E+   +  +GILP+  T+  ++            +EL  EM
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           R  GC PD   YN++I   C  G+L EA+N+  +ME +  +    ++  ++ GF     +
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKI 486

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA E F EM   G+  +    T   L++ L ++++VE A  +   ++ +G + + + + 
Sbjct: 487 REAEEIFDEMEVHGV--SRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYN 544

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             +      G +K+A      M      P   T+  L+ GL K    ++A+++   ++
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 175/390 (44%), Gaps = 7/390 (1%)

Query: 215 LLDALCKNSSVKEAAKLFD--EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           LLD+L   +    A +LF+    +  F P    +  +L    + G   + + +L  MK++
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNS 112

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEKMEE 331
           G E     +  L+  YAQ     +   ++  M    G  P+ + Y  ++  L     ++ 
Sbjct: 113 GCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKL 172

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
              A  +M   G + DV T+  LI   C++ ++     +L+ M   G++P++ T+  IM 
Sbjct: 173 VEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQ 232

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-SLS 450
            + ++ +L+  + +  +M + GC     + NV++   CK G +++A+N   EM       
Sbjct: 233 GYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF 292

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   +F  +V+G    G +  A E    M+  G    P   T  ++++ L +  +V+ A 
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY--DPDVYTYNSVISGLCKLGEVKEAV 350

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +    ++T+ C  N   +   I +L     V+EA      +    ++P   TF  L++GL
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 571 KKLYNRQIAAEITEKVRKMAAE-RQITFKM 599
               N ++A E+ E++R    E  + T+ M
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 217/450 (48%), Gaps = 12/450 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
            S  PN V     Y  +I  L K +       + + M  +K        +  L+  + S 
Sbjct: 196 GSHTPNVV----TYTTVIDGLCKAQMVDRAKGVFQHM-IDKGVRPNNHTYTCLIHGYLSI 250

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHF 246
              K+ +++L EM  +G +PD +++  LLD LCKN    EA  +FD  +R+  KP++  +
Sbjct: 251 GKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIY 310

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             LL+G+  EG L E    L  M   G  PD  ++N +   YA+   + +A  +  +MR+
Sbjct: 311 GILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQ 370

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +   PN  +Y  LI ALC++ ++++A   F +M   G   D+  +++L+ G C   K ++
Sbjct: 371 QRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEK 430

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+   ++ +GI  + + +  +M    ++  + E   L+  M ++G  PDV +YN ++ 
Sbjct: 431 AEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVD 490

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C  G + EA  + + + +  L P   ++  ++HG+     + +A   F+EM+ +GL  
Sbjct: 491 GHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGL-- 548

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC- 545
            P   T   +L+ L +  +   AK+++  ++    ++N+Y + I I+ L  N  V EA  
Sbjct: 549 TPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFK 608

Query: 546 ---SYCLDMMDADVMPQPDTFAKLMRGLKK 572
              S C   +  D+         L++G +K
Sbjct: 609 MFHSLCSKDLQLDIFTANIMIGALLKGGRK 638



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 201/435 (46%), Gaps = 9/435 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL-DE 199
           Y  LI    +M +    +A    + K   ++  T +F  L++    A+ V +A ++L   
Sbjct: 95  YTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRR 154

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLYGWCK 255
           MP++GC PD F +  LL   C     +EA +L   M +       P++  +T+++ G CK
Sbjct: 155 MPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK 214

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
              +  AK V   M D G  P+   Y  L+ GY  +GK  +  ++L+EM   G  P+   
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYI 274

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y VL+  LC+  +  EA   F  + R G + +V  Y  L+ G+     +   +  LD M+
Sbjct: 275 YAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMV 334

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             G+ P+   +  +  A+ KK  ++E + +  +MR+    P++  Y  +I   CKLG + 
Sbjct: 335 GNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVD 394

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLK 494
           +AV  +N+M    ++P    F  +V+G        +A E F E++ +G+ L    + T  
Sbjct: 395 DAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNT-- 452

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+ +L R  +V  A+ +   ++  G   +V ++   +      G + EA      ++  
Sbjct: 453 -LMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSI 511

Query: 555 DVMPQPDTFAKLMRG 569
            + P   T+  L+ G
Sbjct: 512 GLKPDKVTYNTLLHG 526



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 180/385 (46%), Gaps = 12/385 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASAR 188
            PN V     Y ALI +L K+ +         +M  E    +T ++FV   L+    +  
Sbjct: 374 SPNIV----TYGALIDALCKLGRVDDAVLKFNQMIDEG---MTPDIFVFSSLVYGLCTVD 426

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
             +KA E+  E+   G   D   F  L+  LC+   V EA +L D M R   +P +  + 
Sbjct: 427 KWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYN 486

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G C  G++ EA  +L  +   G +PD V YN LL GY +  ++ DA+ L +EM  K
Sbjct: 487 TLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMK 546

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y  ++  L +  +  EA   ++ M  S  + ++ TY  +I+G CK+  +D  
Sbjct: 547 GLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEA 606

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           +++  S+  + +  +  T   ++ A  K    E+ ++L   +   G VPDV  Y ++   
Sbjct: 607 FKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAEN 666

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             K G L+E   +++ ME    +P +     +V   L +G +  A  Y  ++  +    +
Sbjct: 667 LIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNF--S 724

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDV 512
            +  T   L++   R +  ++AK +
Sbjct: 725 LEASTTSMLISIYSRGEYQQLAKSL 749



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 172/393 (43%), Gaps = 49/393 (12%)

Query: 225 VKEAAKLFDEMRERFKP-SLRHFTSLLYG------------------------------- 252
           + +A KLFDEM    +P S+R F  LL                                 
Sbjct: 32  LNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPS 91

Query: 253 ----------WCKEGKLVEAKYVLVQMKDAGFE-PDIVVYNNLLSGYAQMGKMTDAFE-L 300
                     +C+ G+L         +   G+   D V+++ LL G     ++ +A + L
Sbjct: 92  SFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDIL 151

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA---DVVTYTTLISG 357
           L+ M   GC P+  SY++L++  C  ++ EEA      M   G  +   +VVTYTT+I G
Sbjct: 152 LRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDG 211

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK++ +DR   +   MI +G+ PN  TY  ++  +    + +E V+++ EM   G  PD
Sbjct: 212 LCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPD 271

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              Y V++   CK G   EA N+++ +    + P    + +++HG+  +G L E   +  
Sbjct: 272 CYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLD 331

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            MVG G+  +P +     +  +  +   ++ A  ++  +  +    N+  +   I +L  
Sbjct: 332 LMVGNGV--SPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCK 389

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            G V +A      M+D  + P    F+ L+ GL
Sbjct: 390 LGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGL 422


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 216/469 (46%), Gaps = 42/469 (8%)

Query: 119 NLGYRYYMWASK-QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE-V 176
           +L  + +++A K  P + H+YD Y +++  LS+ R F  V +LM ++R   P +   E +
Sbjct: 63  DLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENL 122

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F+ L+R +  A   + ++ +   +P +G +        LL+ L +N        +F   +
Sbjct: 123 FIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSK 182

Query: 237 ERFKPSLRHFTS--LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           E F  +   FT   L+   CK+  +  A  VL ++   G  P++V Y  +L GY   G M
Sbjct: 183 ESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDM 242

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  +L+EM  +G  P+A +YTVL+   C++ +  EA     +ME++  E + VTY  +
Sbjct: 243 ESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVM 302

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I   CK +K      + D M++R  +P+      ++ A  +  +++E   L  +M K  C
Sbjct: 303 IRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNC 362

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PD +  + +I   CK G + EA  +++E E  S+ P   ++  ++ G   +G L EA  
Sbjct: 363 MPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSI-PSLLTYNTLIAGMCEKGELTEA-- 419

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
                 GR                             +W  +  + C+ N + + + I  
Sbjct: 420 ------GR-----------------------------LWDDMYERKCKPNAFTYNVLIEG 444

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           L  NG+VKE      +M++    P   TF  L  GL+KL   + A +I 
Sbjct: 445 LSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIV 493



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 5/241 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y  L+    K+ +F     +M++M  EK ++   EV + +++R     +   +A  + D
Sbjct: 263 TYTVLMDGYCKLGRFSEAATVMDDM--EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFD 320

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM +    PD  +   ++DALC++  V EA  L+ +M +    P     ++L++  CKEG
Sbjct: 321 EMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEG 380

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+ +  +  + G  P ++ YN L++G  + G++T+A  L  +M  + C PNA +Y 
Sbjct: 381 RVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYN 439

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VLI+ L +   ++E  R   EM   GC  +  T+  L  G  K  K +   +I+   +  
Sbjct: 440 VLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMN 499

Query: 378 G 378
           G
Sbjct: 500 G 500


>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
          Length = 561

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 199/425 (46%), Gaps = 7/425 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           +ELAL + G+ L   +   V NR    G     ++ WA KQP      D Y  +IK+L +
Sbjct: 119 IELALTNVGIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKALGR 178

Query: 151 MRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
            +       ++++M  +   P     E   I+M  F  AR V KAIE+   + ++G + D
Sbjct: 179 RKFIEFXVXVLKDMHIQGISPNY---ETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCD 235

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
                 LL  LC+ S V  A   F+ M+     +   +  ++ GW K GK+ E +  L  
Sbjct: 236 TESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKA 295

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M   GF P+ + +++L+ G  + G++ DA E+   M   GC PNA  Y  LI        
Sbjct: 296 MVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRD 355

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
            +E  + +  M  S C+ ++ TYT LI  F K+RK+    E+LD M+ RG++P       
Sbjct: 356 FDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITS 415

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
            +    +       + +  + RK+GC   +S Y +++    + G+    +N+W+EM+ + 
Sbjct: 416 FIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESG 475

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
            S  T+ +  +++G    G L  A    +E + +G    P       L N LL + KVEM
Sbjct: 476 YSSDTEVYEYVINGLCNIGQLDTAVLVMEESLXKGF--CPSRLIRSKLNNKLLASNKVEM 533

Query: 509 AKDVW 513
           A  ++
Sbjct: 534 AYKLF 538


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 210/417 (50%), Gaps = 8/417 (1%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           + L   L  R++ R  D        + WAS +P++ HS + Y  ++  L +M+    +  
Sbjct: 71  IPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVMEKLRD 130

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L+EEMR+    L+        MRRF  A     A+ + D++   G E +      LLD L
Sbjct: 131 LLEEMRE--GGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTL 188

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           CK   V++A ++F E+++   P+   F   ++GWCK  ++ EA + + +MK  GF P ++
Sbjct: 189 CKEKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVI 248

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y+ L+  Y Q G  +  +ELL EM+ +GC  N  +YT ++ AL + +K EEA +    M
Sbjct: 249 SYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERM 308

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKKEE 398
             SGC  D + + +LI    ++ ++D   ++    M + G+ PN  TY  ++       +
Sbjct: 309 RSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQ 368

Query: 399 LEECVELMGEMRKI-GCVPDVSNYNVVIRLACKLGELKEAVN-VWNEM-EAASLSPGTDS 455
            +  +E++ EM    GC PD   Y+ +I+   + G++   ++ + N+M     LS    +
Sbjct: 369 EKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLST 428

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
           + +++HG   +     A   F+EM+ + ++  P+Y T + LL+ + +    + A+ +
Sbjct: 429 YTLLIHGLCREDRCNWAFSLFEEMIDQDII--PRYRTCRLLLDEVKQKNMYQAAEKI 483



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 185/381 (48%), Gaps = 5/381 (1%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++D L +   +++   L +EMRE    ++      +  +   G+ V+A  +   ++ 
Sbjct: 112 YDMMVDILGRMKVMEKLRDLLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQA 171

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G E +    N LL    +   +  A E+  E+++    PNA+++ + I   C++ +++E
Sbjct: 172 LGLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQH-IAPNAHTFNIFIHGWCKICRVDE 230

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A+    EM+  G    V++Y+TLI  +C+     R YE+LD M  +G   N +TY  IM 
Sbjct: 231 AHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMC 290

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN-EMEAASLS 450
           A  K ++ EE +++   MR  GC PD   +N +I    + G L +A +V+  EM  A +S
Sbjct: 291 ALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVS 350

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE--M 508
           P T ++  M+  F        A E  KEM   G    P   T   L+ S  R+ K++  +
Sbjct: 351 PNTSTYNSMISMFCYHAQEKRALEILKEMENSGG-CKPDAQTYHPLIKSCFRSGKIDGVL 409

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           ++ +   I  +   L++  +T+ IH L        A S   +M+D D++P+  T   L+ 
Sbjct: 410 SEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLD 469

Query: 569 GLKKLYNRQIAAEITEKVRKM 589
            +K+    Q A +I + ++K+
Sbjct: 470 EVKQKNMYQAAEKIEDLMKKL 490



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 139/287 (48%), Gaps = 15/287 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN  H+++++   I    K+ +       ++EM+     P +I+   +  L++ +     
Sbjct: 210 PN-AHTFNIF---IHGWCKICRVDEAHWTIQEMKGYGFHPCVIS---YSTLIQCYCQEGN 262

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
             +  E+LDEM   GC  +   +  ++ AL K    +EA K+ + MR    +P    F S
Sbjct: 263 FSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNS 322

Query: 249 LLYGWCKEGKLVEAKYVL-VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L++   + G+L +A  V  V+M  AG  P+   YN+++S +    +   A E+LKEM   
Sbjct: 323 LIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENS 382

Query: 308 G-CDPNANSYTVLIQALCRMEKMEEANRAFVE--MERSGCEADVVTYTTLISGFCKSRKI 364
           G C P+A +Y  LI++  R  K++      +   + +     D+ TYT LI G C+  + 
Sbjct: 383 GGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRC 442

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           +  + + + MI + I+P   T   ++L   K++ + +  E + ++ K
Sbjct: 443 NWAFSLFEEMIDQDIIPRYRT-CRLLLDEVKQKNMYQAAEKIEDLMK 488


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 178/330 (53%), Gaps = 3/330 (0%)

Query: 216 LDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           L  L +N  ++E  +  + M  R   P +   TSL+ G+CK GK  +A  ++  ++D+G 
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGA 150

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD++ YN L+SG    G+  DA +LL +M R+GC P+  ++ +LI  LCR   +  A  
Sbjct: 151 VPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAID 210

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              +M + GC  + ++Y  L+ GFCK +K++R  E L  M  RG  P+ +TY  ++ A  
Sbjct: 211 VLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALC 270

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K  +++  VEL+ ++   GC P +  YN VI    K+G+  +A  + +EM A  L P   
Sbjct: 271 KDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDII 330

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  +V G   +G + EA ++F ++   G+   P   T  A++  L +A+K + A D  +
Sbjct: 331 TYSSLVGGLSREGKVDEAIKFFHDLEVLGV--KPNAITYNAIMLGLCKARKTDRAIDFLA 388

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +V +GC+    ++TI I  L   G  KEA
Sbjct: 389 YMVQRGCKPTEASYTILIEGLAYEGLAKEA 418



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 6/290 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  +    ++     L+ +M  R   P ++T   F IL+       ++ +AI+VL+
Sbjct: 157 YNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVT---FNILINFLCRKGLLGRAIDVLE 213

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +MPK+GC P+   +  LL   CK   ++ A +   +M  R   P +  + +LL   CK+G
Sbjct: 214 KMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDG 273

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+  A  +L Q+   G  P ++ YN ++ G +++GK   A +LL EMR KG  P+  +Y+
Sbjct: 274 KVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYS 333

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  L R  K++EA + F ++E  G + + +TY  ++ G CK+RK DR  + L  M+QR
Sbjct: 334 SLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQR 393

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           G  P + +Y  ++     +   +E +EL+ E+   G V   S   V +R+
Sbjct: 394 GCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEKVAVRM 443



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 168/345 (48%), Gaps = 9/345 (2%)

Query: 147 SLSKMRKFGAV---WALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           +LSK+ + G +   +  +E M  R + P +I       L+R F      +KA  +++ + 
Sbjct: 90  NLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTS---LIRGFCKIGKTRKATRIMEIIE 146

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLV 260
             G  PD   +  L+  +C      +A KL  +M R    PS+  F  L+   C++G L 
Sbjct: 147 DSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLG 206

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A  VL +M   G  P+ + YN LL G+ +  KM  A E L +M  +GC P+  +Y  L+
Sbjct: 207 RAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLL 266

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
            ALC+  K++ A     ++   GC   ++TY T+I G  K  K D+  ++LD M  +G+ 
Sbjct: 267 TALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLK 326

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+ +TY  ++    ++ +++E ++   ++  +G  P+   YN ++   CK  +   A++ 
Sbjct: 327 PDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDF 386

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              M      P   S+ +++ G   +G   EA E   E+  RG++
Sbjct: 387 LAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVV 431



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 37/268 (13%)

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  L R  ++EE  R    M   G   D++  T+LI GFCK  K  +   I++ +   G 
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGA 150

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+ +TY  ++          +  +L+ +M + GC P V  +N++I   C+ G L  A++
Sbjct: 151 VPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAID 210

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V  +M     +P + S+  ++HGF  +  +  A EY  +M  RG    P   T   LL +
Sbjct: 211 VLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCY--PDIVTYNTLLTA 268

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L +  KV+ A ++ + + +KGC                                    P 
Sbjct: 269 LCKDGKVDAAVELLNQLSSKGCS-----------------------------------PV 293

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             T+  ++ GL K+     AA++ +++R
Sbjct: 294 LITYNTVIDGLSKVGKTDQAAKLLDEMR 321


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 192/388 (49%), Gaps = 4/388 (1%)

Query: 135  VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
            V     Y  +I  L K         +   M++E  + +    +  L+        +  A+
Sbjct: 630  VADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGN-YKTLLSSLVKDEKIDFAL 688

Query: 195  EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGW 253
            ++ +E+ +    PD FV+  +++ L K++ V EA KL D M+ +   P L  +TSLL G 
Sbjct: 689  QIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGL 748

Query: 254  CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
             K G+L EA  +  +M + G EPD+V Y +L+    + GK++ A  + + M +K C P+ 
Sbjct: 749  GKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDV 808

Query: 314  NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
             +Y+ LI +L +  ++EEA   F      GC  +V  Y++LI  F K   +DR  E+ + 
Sbjct: 809  VTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEE 868

Query: 374  MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
            M +R   PN +TY +++    K   L    +L+ EM K+GCVPD+  YN++I    K+G 
Sbjct: 869  MQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGM 928

Query: 434  LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            + EA + +  M+   + P   +F  ++        L+EACE F  M   G    P   T 
Sbjct: 929  VDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGY--NPSVVTY 986

Query: 494  KALLNSLLRAQKVEMAKDVWSCIVTKGC 521
              L++ L RA KV  A  ++  +  KGC
Sbjct: 987  NVLIDILGRAGKVHEAAMIFHEMKVKGC 1014



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 215/472 (45%), Gaps = 9/472 (1%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L PGL   V+    D  +L   ++ WA +Q  Y H+   Y  +IK L+  ++  AV  ++
Sbjct: 147 LNPGLVCDVVVNQKDL-HLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQIL 205

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
             M KE  + I+  +   L+R F S   V  A+E+ ++M  +GC P   ++  +L+ L K
Sbjct: 206 TAMWKEGHR-ISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVK 264

Query: 222 NSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
                 A  +F ++ + R +P  + F   ++ + + G+L  A   + +M  +G +P +  
Sbjct: 265 GGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHT 324

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           +  L+    + G + +A +    M+   C PN  +YT L+  L +  ++EEA   FVEM+
Sbjct: 325 FTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMK 384

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            + C  D + Y TLI G  K+ + D    +   M  RG++PN  TY  ++    K     
Sbjct: 385 ENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQP 444

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  +L  ++++ G VPDV  YN +I +  K G++ + + +  EM    +  G +  ++  
Sbjct: 445 EAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM----VEKGGEC-IISR 499

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
               G    IE  +   E    G  S  +  T   L+++ +    V+ A  +   +    
Sbjct: 500 DSNAGHEGTIEGADRTVEYPSLGFKSLGEI-TYNTLMSAFIHNGHVDEAVKLLEVMKKHE 558

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           C   V  +T  +  L   G + EA S   +M      P   T++ LM    K
Sbjct: 559 CIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYK 610



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 220/466 (47%), Gaps = 16/466 (3%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K+   V     Y  LI  L K  +   V A+++EM ++  + I +        R ++A  
Sbjct: 454 KEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIIS--------RDSNAGH 505

Query: 190 VKKAIEVLD---EMPKYGCEP-DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
            +  IE  D   E P  G +   E  +  L+ A   N  V EA KL + M++    P++ 
Sbjct: 506 -EGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVV 564

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +T+L+ G  K G+L EA  +L +M+  G EP +V Y++L++ + +  +  ++  L  EM
Sbjct: 565 TYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEM 624

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            RKGC  + ++Y+++I  LC+ + +++A   F  M+  G E  +  Y TL+S   K  KI
Sbjct: 625 VRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKI 684

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           D   +I + + +  ++P+   Y  ++    K   ++E  +L+  M+    +PD+  Y  +
Sbjct: 685 DFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSL 744

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +    K G L+EA N++ +M      P   ++  ++      G L  A   F+ M  +  
Sbjct: 745 LDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKK-- 802

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T  +L++SL +  +VE A   +   ++KGC  NV  ++  I S    G V  A
Sbjct: 803 RCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRA 862

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
                +M      P   T+  L+ GL K     +A ++ E++ K+ 
Sbjct: 863 LELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVG 908



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 197/417 (47%), Gaps = 8/417 (1%)

Query: 160 LMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           L+E M+K +  P ++T   +  L+     A  + +A+ +L EM K GCEP    +  L+ 
Sbjct: 550 LLEVMKKHECIPTVVT---YTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMA 606

Query: 218 ALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           +  K    +E+  LFDEM R+     +  ++ ++   CK   + +A  V  +MK+ G EP
Sbjct: 607 SFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEP 666

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
            +  Y  LLS   +  K+  A ++  E++     P+   Y +++  L +  +++EA +  
Sbjct: 667 LLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLV 726

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             M+      D+ TYT+L+ G  KS +++  + +   M + G  P+ + Y  +M    K 
Sbjct: 727 DSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKG 786

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            +L   + +   M K  CVPDV  Y+ +I    K G ++EA   +    +   +P    +
Sbjct: 787 GKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVY 846

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++  F  +G +  A E F+EM  R     P   T   LL+ L +A ++ +A+ +   +
Sbjct: 847 SSLIDSFGKKGMVDRALELFEEMQRRQ--CPPNIVTYNNLLSGLAKAGRLNVAEKLLEEM 904

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
              GC  ++  + I I  +   G V EA SY   M +  ++P   TF  L+  L K+
Sbjct: 905 EKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKV 961



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 162/323 (50%), Gaps = 6/323 (1%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            VY  ++  L K  +      L++ M+ +   P L T   +  L+     +  +++A  + 
Sbjct: 705  VYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFT---YTSLLDGLGKSGRLEEAFNMF 761

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
             +M + G EPD   +  L+D L K   +  A  +F  M ++R  P +  ++SL+    KE
Sbjct: 762  TKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKE 821

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            G++ EA Y        G  P++ VY++L+  + + G +  A EL +EM+R+ C PN  +Y
Sbjct: 822  GRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTY 881

Query: 317  TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
              L+  L +  ++  A +   EME+ GC  D+VTY  LI G  K   +D        M +
Sbjct: 882  NNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKE 941

Query: 377  RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            +GI+P+ +T+  ++ +  K ++L E  EL   M + G  P V  YNV+I +  + G++ E
Sbjct: 942  KGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHE 1001

Query: 437  AVNVWNEMEAASLSPGTDSFVVM 459
            A  +++EM+     P   +  +M
Sbjct: 1002 AAMIFHEMKVKGCMPDGITIGIM 1024



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 178/360 (49%), Gaps = 3/360 (0%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            Y+ L+ SL K  K      +  E+ +E   +  T V+ I++     +  V +A +++D M
Sbjct: 671  YKTLLSSLVKDEKIDFALQIFNEL-QESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSM 729

Query: 201  PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
                  PD F +  LLD L K+  ++EA  +F +M E   +P +  +TSL+    K GKL
Sbjct: 730  KNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKL 789

Query: 260  VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
              A  +   M      PD+V Y++L+    + G++ +A+   +    KGC PN   Y+ L
Sbjct: 790  SHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSL 849

Query: 320  IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
            I +  +   ++ A   F EM+R  C  ++VTY  L+SG  K+ +++   ++L+ M + G 
Sbjct: 850  IDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGC 909

Query: 380  LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            +P+ +TY  ++    K   ++E       M++ G VPDV  +  +I    K+ +L EA  
Sbjct: 910  VPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACE 969

Query: 440  VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTLKALLN 498
            +++ ME    +P   ++ V++      G + EA   F EM  +G +      G +K +L+
Sbjct: 970  LFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILS 1029



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 110  VINRCGDAGNLGYRYYMWA-SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
            +I+  G  G +   YY +  S       +  VY +LI S  K         L EEM++ +
Sbjct: 814  LIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ 873

Query: 169  --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
              P ++T   +  L+   A A  +  A ++L+EM K GC PD   +  L+D + K   V 
Sbjct: 874  CPPNIVT---YNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVD 930

Query: 227  EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            EA   F  M+E+   P +  FTSL+    K  KL+EA  +   M++ G+ P +V YN L+
Sbjct: 931  EAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLI 990

Query: 286  SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
                + GK+ +A  +  EM+ KGC P+  +  ++ + L   E+
Sbjct: 991  DILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVREQ 1033


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 179/347 (51%), Gaps = 6/347 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  +I  L K+ +  A   L ++M +   +P ++T   + IL+      ++V +A+++ 
Sbjct: 202 TYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVT---YNILIDSLCKDKLVNEALDIF 258

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
             M      PD F +  L+  LC     KEA+ L +EM      P++  F  L+   CKE
Sbjct: 259 SYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKE 318

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK+ EA+ V   M + G EPD+V Y++L+ GY+   ++ +A +L   M  KGC P+A SY
Sbjct: 319 GKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSY 378

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +LI+  C+ ++++EA + F EM   G   D V Y TLI G C+  ++    ++  +M  
Sbjct: 379 NILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHS 438

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G LP+  TY  ++    K+  L +   L   M+     PD++ YN++I   CK G LK+
Sbjct: 439 NGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKD 498

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           A  +++E+    L P    +  +++    +G L EA E F+ M G G
Sbjct: 499 ARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDG 545



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 218/456 (47%), Gaps = 12/456 (2%)

Query: 141 YRALIKSLSKMRKF-GAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +  L+ ++ KM ++ GAV +L ++M      P + T     IL+  F+  + V  A  V 
Sbjct: 97  FTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS---ILIDCFSHLQRVDLAFSVF 153

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M K G +PD   F  L++ LCK     +A + FD+      +P++  +T+++ G CK 
Sbjct: 154 SKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKI 213

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+   A  +  +M++AG +P++V YN L+    +   + +A ++   M+ K   P+  +Y
Sbjct: 214 GETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTY 273

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LIQ LC   + +EA+    EM       ++ T+  L+   CK  K+     +  +M +
Sbjct: 274 NSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTE 333

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ P+ +TY  +M  +  + E+ E  +L   M   GC PD  +YN++I+  CK   + E
Sbjct: 334 MGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDE 393

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++NEM    L+P   ++  ++HG    G L EA + FK M   G L  P   T   L
Sbjct: 394 AKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNL--PDLFTYSML 451

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L+   +   +  A  ++  + +   + ++  + I I ++   G++K+A     ++    +
Sbjct: 452 LDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGL 511

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
           +P    +  ++  L K     +  E  E  R M  +
Sbjct: 512 LPNVQIYTTIINNLCK---EGLLDEALEAFRNMEGD 544



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 177/362 (48%), Gaps = 10/362 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFA 185
           A  QPN V     Y  LI SL K +       +   M+ ++   I+ ++F    L++   
Sbjct: 229 AGCQPNVV----TYNILIDSLCKDKLVNEALDIFSYMKAKR---ISPDIFTYNSLIQGLC 281

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
           + R  K+A  +L+EM      P+ F F  L+DA+CK   V EA  +F  M E   +P + 
Sbjct: 282 NFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVV 341

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++SL+YG+    ++VEA+ +   M   G +PD   YN L+ GY +  ++ +A +L  EM
Sbjct: 342 TYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM 401

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             +G  P+  +Y  LI  LC++ ++ EA   F  M  +G   D+ TY+ L+ GFCK   +
Sbjct: 402 IHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYL 461

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
            + + +   M    + P+   Y  ++ A  K   L++  +L  E+   G +P+V  Y  +
Sbjct: 462 GKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTI 521

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK G L EA+  +  ME     P   S+ V++ GFL       A +   EM  RG 
Sbjct: 522 INNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGF 581

Query: 485 LS 486
           ++
Sbjct: 582 VA 583



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 173/353 (49%), Gaps = 6/353 (1%)

Query: 224 SVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLV-QMKDAGFEPDIVVY 281
           ++ +A   F+ M  R   P +  FT LL    K G+   A   L  QM+ AG  PDI   
Sbjct: 74  NIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTL 133

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           + L+  ++ + ++  AF +  +M + G  P+A ++  LI  LC++ K  +A   F + E 
Sbjct: 134 SILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEA 193

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SGC+  V TYTT+I+G CK  +      +   M + G  PN +TY  ++ +  K + + E
Sbjct: 194 SGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNE 253

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            +++   M+     PD+  YN +I+  C     KEA  + NEM + ++ P   +F V+V 
Sbjct: 254 ALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVD 313

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVWSCIVTKG 520
               +G + EA   FK M   G+   P   T  +L+    LR + VE A+ ++  ++TKG
Sbjct: 314 AICKEGKVSEAQGVFKTMTEMGV--EPDVVTYSSLMYGYSLRMEIVE-ARKLFDAMITKG 370

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           C+ + +++ I I        + EA     +M+   + P    +  L+ GL +L
Sbjct: 371 CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQL 423



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 146/287 (50%), Gaps = 6/287 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN + +++V    I    K+ +   V+  M EM  E P ++T   +  LM  ++    + 
Sbjct: 303 PN-IFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVE-PDVVT---YSSLMYGYSLRMEIV 357

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           +A ++ D M   GC+PD F +  L+   CK   + EA +LF+EM  +   P   ++ +L+
Sbjct: 358 EARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLI 417

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G C+ G+L EA+ +   M   G  PD+  Y+ LL G+ + G +  AF L + M+     
Sbjct: 418 HGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLK 477

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+   Y +LI A+C+   +++A + F E+   G   +V  YTT+I+  CK   +D   E 
Sbjct: 478 PDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEA 537

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
             +M   G  P++ +Y  I+    + ++     +L+GEMR  G V +
Sbjct: 538 FRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAE 584



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 6/215 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LIK   K ++      L  EM  +   P  +    +  L+        +++A ++  
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVN---YNTLIHGLCQLGRLREAQDLFK 434

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
            M   G  PD F +  LLD  CK   + +A +LF  M+  + KP +  +  L+   CK G
Sbjct: 435 NMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFG 494

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A+ +  ++   G  P++ +Y  +++   + G + +A E  + M   GC P+  SY 
Sbjct: 495 NLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYN 554

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           V+I+   + +    A +   EM   G  A+  T T
Sbjct: 555 VIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTT 589



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 38/305 (12%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEADVVTY 351
            + DA      M  +   P    +T L+ A+ +M +   A  +   +ME +G   D+ T 
Sbjct: 74  NIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTL 133

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           + LI  F   +++D  + +   MI                                   K
Sbjct: 134 SILIDCFSHLQRVDLAFSVFSKMI-----------------------------------K 158

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
           +G  PD   +N +I   CK+G+  +AV  +++ EA+   P   ++  +++G    G    
Sbjct: 159 LGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTA 218

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   FK+M   G    P   T   L++SL + + V  A D++S +  K    +++ +   
Sbjct: 219 AAGLFKKMEEAG--CQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSL 276

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L +    KEA +   +M   ++MP   TF  L+  + K      A  + + + +M  
Sbjct: 277 IQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGV 336

Query: 592 ERQIT 596
           E  + 
Sbjct: 337 EPDVV 341


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 200/407 (49%), Gaps = 8/407 (1%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           +G+ L   L  R++ R  D        + WA    N+ HS   Y  ++  L +M+    +
Sbjct: 80  NGIHLSENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKM 139

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
             ++EEMR+E   LIT      +MRRF  AR  K A+ + D++   G E +      LLD
Sbjct: 140 REILEEMRQE--SLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLD 197

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   V++A +++ E++    P+   F  L++GWC   ++ EA + + +MK  G  P 
Sbjct: 198 TLCKEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPC 257

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y+ ++  Y Q       ++LL EM+ + C PN  +YT ++ AL + EK EEA +   
Sbjct: 258 VISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVE 317

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKK 396
            M   GC  D + + +LI    ++ +ID    +   +M +  + PN  TY  ++      
Sbjct: 318 RMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYY 377

Query: 397 EELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVN-VWNEM-EAASLSPGT 453
            + E    ++ EM K G C PD+  Y+ +I+   K+ E+   +N + N+M     +    
Sbjct: 378 AQEERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGLDL 437

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            ++ +++HG         A + F+EM  + ++  P+Y T + LL+ +
Sbjct: 438 STYTLLIHGLYRADRCKWAFDLFEEMADQDIV--PRYKTCRLLLDEV 482



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 203/426 (47%), Gaps = 18/426 (4%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++D L +  ++ +  ++ +EMR+    +L     ++  +    +  +A  +   ++ 
Sbjct: 123 YDMMVDILGRMKAMDKMREILEEMRQESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQF 182

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G E +    N LL    +   +  A E+  E++     PNA+++ +LI   C + ++EE
Sbjct: 183 LGLEKNTESMNVLLDTLCKEKFVEQAREIYLELKHY-IAPNAHTFNILIHGWCNIRRVEE 241

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A+    EM+  GC   V++Y+T+I  +C+ +  DR Y++LD M  +   PN +TY  IM 
Sbjct: 242 AHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMC 301

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN-EMEAASLS 450
           A  K E+ EE ++++  M  +GC PD   +N +I    + G + +A +V+   M  AS++
Sbjct: 302 ALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVA 361

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM-A 509
           P T ++  M+  F        A    KEM   GL   P   T   L+ S  + ++++   
Sbjct: 362 PNTSTYNSMISMFCYYAQEERAFGILKEMEKSGL-CKPDIQTYHPLIKSCFKMREIDTWL 420

Query: 510 KDVWSCIVTK---GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
            D+ + +V K   G +L+ Y  T+ IH L+     K A     +M D D++P+  T   L
Sbjct: 421 NDILNDMVNKYHIGLDLSTY--TLLIHGLYRADRCKWAFDLFEEMADQDIVPRYKTCRLL 478

Query: 567 MRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKE------KAKKQVDGRK 620
           +  +K+        +I ++   +     I+ K   ++ +  LK       + KKQ+ G  
Sbjct: 479 LDEVKQKNMHLAVVKIEDRNTGVMG---ISMKPENKKNDEGLKSGTIFFGRKKKQIIGEN 535

Query: 621 RRARQR 626
           +  R++
Sbjct: 536 KPERKK 541


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 232/463 (50%), Gaps = 14/463 (3%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEV 196
           D Y  +++SL+K         + E M+ E   P L+T   + +L+    +A    KA+++
Sbjct: 11  DAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVT---YNVLINSRCNAGEFGKALDL 67

Query: 197 LDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
              M +    EPD + +  L+  LC + + + A KL  EMR++    ++  ++S++    
Sbjct: 68  FQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLV 127

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           KE K  E+  VL +M  AG  PD+  +N ++ G+A+   M  A E+ + M   G  P+  
Sbjct: 128 KEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNV 187

Query: 315 SYTVLIQALCRMEKMEEANRAFVEM--ERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           SY +LI  L ++ K++E+ +   EM    +G   +V+T++TLI G C++ ++++  E+  
Sbjct: 188 SYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFG 247

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
           SM++ G  PN+ TY  ++    + E++ +  EL  +M +    PD   YN +I   CK G
Sbjct: 248 SMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRG 307

Query: 433 ELKEAVNVWNEMEA-ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            + EA  ++ EM   A L P   +F  ++ GF   G L  A E   EM  +GL  A    
Sbjct: 308 SMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL--AADTC 365

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T + L+  L RA K++ A +V+  +  K   L+  +   ++  L   G++ +A +     
Sbjct: 366 TYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEAT 425

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE--KVRKMAAE 592
             +  +P P+TF  L   L KL   + A ++ E  K R + A+
Sbjct: 426 RKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDITAQ 468



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 213/440 (48%), Gaps = 7/440 (1%)

Query: 110 VINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           V+     AG L     ++ + K  + V S   Y  LI S     +FG    L + M++EK
Sbjct: 16  VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREK 75

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
                   +  L+    S+   + A ++L EM       + F +  ++ +L K +  +E+
Sbjct: 76  RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEES 135

Query: 229 AKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            K+ +EM      P +  F  ++ G+ +   + +A+ V   M ++G++PD V Y+ L+ G
Sbjct: 136 YKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHG 195

Query: 288 YAQMGKMTDAFELLKEM--RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            A++GK+ ++ ++L EM  R  G  PN  +++ LI  LCR  ++E+A   F  M  +GC+
Sbjct: 196 LAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCK 255

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            +  TYTTLI+G C++ K+ +  E+ + M Q  I P+ + Y  ++  + K+  ++E  +L
Sbjct: 256 PNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKL 315

Query: 406 MGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
             EM    G  P +  +N +I   CKLG+L  A  +  EM    L+  T ++ +++ G  
Sbjct: 316 YREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLS 375

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
               L EA E +K+M  +  L  P   +  + +  L +   ++ A  V+      G   N
Sbjct: 376 RATKLDEALEVYKQMREKKFLLDPV--SCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPN 433

Query: 525 VYAWTIWIHSLFSNGHVKEA 544
              + I   SL   G V++A
Sbjct: 434 PETFRILSESLIKLGRVEDA 453



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 192/431 (44%), Gaps = 40/431 (9%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGK 258
           M K  C      +  ++ +L K   + +A ++F+ M+ E   PSL  +  L+   C  G+
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 259 LVEAKYVLVQMK-DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             +A  +   MK +   EPD   YN L+SG    G    A +LL EMR K    N  +Y+
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I++L +  K EE+ +   EM  +GC  DV  +  ++ GF +S  +++  E+   M++ 
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGE--MRKIGCVPDVSNYNVVIRLACKLGELK 435
           G  P+ ++Y  ++    K  +L+E ++++ E  MR  G VP+V  ++ +I   C+ GEL+
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELE 240

Query: 436 EAVNVWN-----------------------------------EMEAASLSPGTDSFVVMV 460
           +A+ V+                                    +M  A + P   ++  ++
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 300

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G+  +G + EA + ++EM G   L  P   T   L++   +  K+  A ++ + + TKG
Sbjct: 301 AGYCKRGSMDEAEKLYREMSGGAGLQ-PTIVTFNTLIDGFCKLGKLGRANELVAEMGTKG 359

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
              +   + I I  L     + EA      M +   +  P +    + GL K  N   A 
Sbjct: 360 LAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAY 419

Query: 581 EITEKVRKMAA 591
            + E  RK  A
Sbjct: 420 AVFEATRKSGA 430


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 256/529 (48%), Gaps = 17/529 (3%)

Query: 70  FSHDV----EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRY 124
           ++H V    E+  RILK F    P  E AL+   + +   L   V+    D G N+  ++
Sbjct: 53  YAHSVRVLDERFIRILKIFKWG-PDAEKALEVLMLRVDHWLVREVMKT--DIGVNVKMQF 109

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA+K+ NY H    Y ALI+ L  + ++G +W +++EM +    ++T      ++R  
Sbjct: 110 FRWAAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRML 169

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS 242
            +A+MV KAI +  ++    C+P    +  ++  L       +  +L++EM       P 
Sbjct: 170 GNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPD 229

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              +++L+  +CK G+   A  +L +MK+ G +P   +Y  L++ + ++  +  A  L +
Sbjct: 230 TMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFE 289

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EMR + C P+  +YT LI+ L +  +++EA   F EM+R GC  D V    +I+   K+ 
Sbjct: 290 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAG 349

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNY 421
           ++D   ++   M     +P+ +TY  I+ A  E K    E       M++ G  P    Y
Sbjct: 350 RLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 409

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMV 480
           +++I   CK   +++A+ +  EM+     P   ++  ++   LG+    + ACE F+E+ 
Sbjct: 410 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELK 468

Query: 481 GR-GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G  SA  Y     ++  L +A +++ A +++  +   GC  +VYA+   +  L   G
Sbjct: 469 ENCGSSSARVYAV---MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTG 525

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            + EA S    M +   +P  +++  ++ GL K      A E+   +++
Sbjct: 526 MLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQ 574



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 7/349 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI    K+       +L EEMR +  +P + T   +  L+R    A  + +A    
Sbjct: 267 IYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFT---YTELIRGLGKAGRIDEAYHFF 323

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG-WCK 255
            EM + GC PD  V   +++ L K   + +A KLF EM   R  PS+  + +++   +  
Sbjct: 324 YEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFES 383

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + +  E      +MK++G  P    Y+ L+ G+ +  +M  A  LL+EM  KG  P   +
Sbjct: 384 KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAA 443

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI AL + ++ + A   F E++ +   +    Y  +I    K+ ++D    + D M 
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMN 503

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  P+   Y  +M    +   L+E +  M  M++ GC+PD+++YN+++    K G   
Sbjct: 504 KLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPH 563

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            A+ + + M+ +++ P   S+  ++      G   EA +  +EM   G 
Sbjct: 564 RAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGF 612



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +L K +++     L +E+ KE     +  V+ ++++    A  +  AI + DEM
Sbjct: 444 YCSLIDALGKAKRYDLACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 502

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKL 259
            K GC PD + +  L+  L +   + EA      M+E    P +  +  +L G  K G  
Sbjct: 503 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGP 562

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L  MK +   PD+V YN +L   +  G   +A +L++EM   G + +  +Y+ +
Sbjct: 563 HRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSI 622

Query: 320 IQALCRME 327
           ++A+ +++
Sbjct: 623 LEAIGKVD 630


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 197/383 (51%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A ++ +++    L+   V  +  ++      ++V +A ++  
Sbjct: 193 YGTLIHGLCKV---GETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFS 249

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+   C    + +A  LF++M  E  KP +  F  L+  +CK+G
Sbjct: 250 EMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDG 309

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ E K V   M   G +P+ V YN+L+ GY  + ++  A  +   M + G +P+  SY+
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYS 369

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++K +EA   F EM R     DVVTY++LI G  KS +I    +++D M  R
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P   TY  I+ A  K  ++++ + L+ +++  G  P++  Y+++I+  C+ G+L++A
Sbjct: 430 GVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDA 489

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+  +     +   D++ +M+ GF  +G   EA     +M   G +  P   T + ++
Sbjct: 490 RKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCI--PDAKTYEIII 547

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            SL +  + +MA+ +   ++ +G
Sbjct: 548 LSLFKKDENDMAEKLLREMIARG 570



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 241/494 (48%), Gaps = 15/494 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL K + +  V  L ++M  R  KP L+      IL+  F    ++  A  V  
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCN---ILINCFCQLGLIPFAFSVFA 144

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++ K G  PD   F  L+  LC    +++A    D++    F      + +L++G CK G
Sbjct: 145 KILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A  +L ++     +P++V+YN ++    ++  + +AF+L  EM  KG  P+  +Y+
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYS 264

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C + K+ +A   F +M     + DV T+  L++ FCK  K+     + D M+++
Sbjct: 265 ALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI PN +TY  +M  +   +E+ +   +   M + G  PD+ +Y+++I   CK+ +  EA
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEA 384

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +N++ EM   ++ P   ++  ++ G    G +  A +   +M  RG+   P   T  ++L
Sbjct: 385 MNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV--PPTIRTYNSIL 442

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++L +  +V+ A  + + +  KG + N+Y ++I I  L  +G +++A      ++     
Sbjct: 443 DALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHN 502

Query: 558 PQPDTFAKLMRG--LKKLYNRQIA----AEITEKVRKMAAERQITFKMYKRRGERDLKEK 611
              DT+  +++G  ++ L+N  +A     E    +        I   ++K+  E D+ EK
Sbjct: 503 LNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKD-ENDMAEK 561

Query: 612 AKKQVDGRKRRARQ 625
             +++  R  R RQ
Sbjct: 562 LLREMIARGVRPRQ 575



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 174/352 (49%), Gaps = 3/352 (0%)

Query: 222 NSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           N+ V +A  LF+ + R    P    F  +L    K        Y+  +M+  G +P++V 
Sbjct: 63  NNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 122

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
            N L++ + Q+G +  AF +  ++ + G  P+  ++T LI+ LC   ++++A     ++ 
Sbjct: 123 CNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVV 182

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   D ++Y TLI G CK  +     ++L  +    + PN + Y  I+ +  K + + 
Sbjct: 183 ALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVN 242

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  +L  EM   G  PDV  Y+ +I   C LG+L +A++++N+M   ++ P   +F ++V
Sbjct: 243 EAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILV 302

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           + F   G + E    F  M+ +G+   P + T  +L++     ++V  AK +++ +   G
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQGI--KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              ++ +++I I+         EA +   +M   +++P   T++ L+ GL K
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 15/277 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN+V     Y +L+     +++     ++   M +    P +   + + I++  F   +
Sbjct: 327 KPNFV----TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDI---QSYSIMINGFCKIK 379

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
              +A+ +  EM +    PD   +  L+D L K+  +  A +L D+M +R   P++R + 
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYN 439

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S+L   CK  ++ +A  +L ++KD G +P++  Y+ L+ G  Q GK+ DA ++ + +  K
Sbjct: 440 SILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK 499

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G + N ++YT++IQ  C      EA     +ME +GC  D  TY  +I    K  + D  
Sbjct: 500 GHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMA 559

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
            ++L  MI RG+ P Q     I +  +KK+E +   E
Sbjct: 560 EKLLREMIARGVRPRQ-----IAIWFQKKKEYDVSSE 591



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + + Y++  + +     + DA  L   + R+   P A  +  ++ +L + +         
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +ME  G + ++V    LI+ FC+   I   + +   +++ G +P+ +T+  ++     K
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLK 168

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            ++++      ++  +G   D  +Y  +I   CK+GE + A+++   ++   + P     
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN---- 224

Query: 457 VVMVHGFLGQGCLI----EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
           VVM +  +   C +    EA + F EM+ +G+  +P   T  AL++      K+  A D+
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMISKGI--SPDVVTYSALISGFCILGKLNDAIDL 282

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           ++ ++ +  + +VY + I +++   +G +KE  +    MM   + P   T+  LM G
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 13/264 (4%)

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
           N  F  +  S  + + ++Y++  + F  +  +D    + + +++R   P    +  I+ +
Sbjct: 35  NTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGS 94

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K +     + L  +M   G  P++ N N++I   C+LG +  A +V+ ++      P 
Sbjct: 95  LVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPD 154

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKD 511
           T +F  ++ G   +G + +A  +  ++V  G       YGT   L++ L +  +   A D
Sbjct: 155 TITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGT---LIHGLCKVGETRAALD 211

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL- 570
           +   +     + NV  +   I S+     V EA     +M+   + P   T++ L+ G  
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFC 271

Query: 571 --------KKLYNRQIAAEITEKV 586
                     L+N+ I   I   V
Sbjct: 272 ILGKLNDAIDLFNKMILENIKPDV 295


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 234/482 (48%), Gaps = 24/482 (4%)

Query: 140 VYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           VY  L+  L   SKM+    V++ M E R  KP ++T   F  LM+    A  V+ A+ +
Sbjct: 152 VYNHLLNVLVEGSKMKLLETVYSEMGE-RGIKPDVVT---FNTLMKALCRAHQVRTAVLM 207

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCK 255
           L+EM   G  PDE  F  L+    +  S+K A ++   M E    P+      L+ G+CK
Sbjct: 208 LEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCK 267

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++ +A   + Q    GFEPD + YN  ++G  Q G +  A +++  M ++G DP+  +
Sbjct: 268 LGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFT 327

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++  LC+  ++EEA     +M   GC  D+ T+ TLI   C   +++   ++   + 
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVT 387

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G+ P+  T+  ++ A  K  + +  + L  EM+  GC PD   YN +I   C LG+L 
Sbjct: 388 LKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLG 447

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+++  EME+A     T ++  ++ G   +  + EA E F +M  +G+  +    T   
Sbjct: 448 KALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SRNAITFNT 505

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM---- 551
           L++ L + ++++ A  + S ++++G + N   +   +      G +K+A      M    
Sbjct: 506 LIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANG 565

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA------AERQITFKMYKRRGE 605
            + DV+    T+  L+ GL K    Q+A ++   +R         A   +   +++R   
Sbjct: 566 FEVDVV----TYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNT 621

Query: 606 RD 607
           RD
Sbjct: 622 RD 623



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 198/408 (48%), Gaps = 7/408 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  IT   FV           V  A++V+D M + G +PD F +  +++ LCKN  ++E
Sbjct: 287 EPDQITYNTFV---NGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 343

Query: 228 AAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  + ++M ER   P +  F +L+   C   +L EA  +  Q+   G  PD+  +N L++
Sbjct: 344 AKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILIN 403

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              ++G    A  L +EM+  GC P+  +Y  LI  LC + K+ +A     EME +GC  
Sbjct: 404 ALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPR 463

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             VTY T+I G CK  +I+   E+ D M  +GI  N +T+  ++    K + +++  +L+
Sbjct: 464 STVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLI 523

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M   G  P+   YN ++   CK G++K+A ++   M A        ++  +++G    
Sbjct: 524 SQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKA 583

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G    A +  + M  +G+ + P+      ++ SL R      A +++  +   G   + +
Sbjct: 584 GRTQVALKLLRGMRIKGMRATPK--AYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAF 641

Query: 527 AWTIWIHSLF-SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            + I    L    G ++EA  + L+M+D   +P+  +F  L  GL  L
Sbjct: 642 TYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNL 689



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 191/394 (48%), Gaps = 5/394 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
           +L+  +     V+ A+  + +    G EPD+  +   ++ LC+N  V  A K+ D M +E
Sbjct: 260 VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQE 319

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P +  +  ++   CK G+L EAK +L QM + G  PDI  +N L+       ++ +A
Sbjct: 320 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEA 379

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +L +++  KG  P+  ++ +LI ALC++   + A R F EM+ SGC  D VTY TLI  
Sbjct: 380 LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDN 439

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C   K+ +  ++L  M   G   + +TY  I+    KK  +EE  E+  +M   G   +
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              +N +I   CK   + +A  + ++M +  L P   ++  ++  +  QG + +A +  +
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQ 559

Query: 478 EMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M   G  +    YGTL   +N L +A + ++A  +   +  KG      A+   I SLF
Sbjct: 560 TMTANGFEVDVVTYGTL---INGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLF 616

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              + ++A +   +M +    P   T+  + RGL
Sbjct: 617 RRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGL 650



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 201/412 (48%), Gaps = 3/412 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T V+  L+        +K    V  EM + G +PD   F  L+ ALC+   V+ A  + +
Sbjct: 150 TVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 209

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EM      P    FT+L+ G+ +EG +  A  V  +M + G  P  V  N L++GY ++G
Sbjct: 210 EMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLG 269

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           ++ DA   +++    G +P+  +Y   +  LC+   +  A +    M + G + DV TY 
Sbjct: 270 RVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYN 329

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +++  CK+ +++    IL+ M++RG LP+  T+  +++A      LEE ++L  ++   
Sbjct: 330 IVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLK 389

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PDV  +N++I   CK+G+ + A+ ++ EM+++  +P   ++  ++      G L +A
Sbjct: 390 GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKA 449

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            +  KEM   G   +    T   +++ L +  ++E A++V+  +  +G   N   +   I
Sbjct: 450 LDLLKEMESAGCPRSTV--TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 507

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
             L  +  + +A      M+   + P   T+  ++    K  + + AA+I +
Sbjct: 508 DGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQ 559



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 2/293 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL+         + A+ + +EM   GC PDE  +  L+D LC    + +A  L  EM 
Sbjct: 398 FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEME 457

Query: 237 ERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
               P S   + +++ G CK+ ++ EA+ V  QM   G   + + +N L+ G  +  ++ 
Sbjct: 458 SAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRID 517

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA +L+ +M  +G  PN  +Y  ++   C+   +++A      M  +G E DVVTY TLI
Sbjct: 518 DANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLI 577

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G CK+ +     ++L  M  +G+      Y  ++ +  ++    + + L  EM ++G  
Sbjct: 578 NGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEP 637

Query: 416 PDVSNYNVVIRLACK-LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           PD   Y +V R  C+  G ++EA +   EM      P   SF ++  G L  G
Sbjct: 638 PDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 148/328 (45%), Gaps = 4/328 (1%)

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDA--GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           S L  + ++   V+A  +++   D   G + D VVYN+LL+   +  KM     +  EM 
Sbjct: 118 SFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMG 177

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  P+  ++  L++ALCR  ++  A     EM  SG   D  T+TTL+ GF +   I 
Sbjct: 178 ERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIK 237

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               +   M++ G  P ++T   ++  + K   +E+ +  + +    G  PD   YN  +
Sbjct: 238 AALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFV 297

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+ G +  A+ V + M      P   ++ ++V+     G L EA     +MV RG L
Sbjct: 298 NGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCL 357

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T   L+ +L    ++E A D+   +  KG   +VY + I I++L   G  + A 
Sbjct: 358 --PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLAL 415

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKL 573
               +M  +   P   T+  L+  L  L
Sbjct: 416 RLFEEMKSSGCTPDEVTYNTLIDNLCSL 443


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 205/450 (45%), Gaps = 6/450 (1%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ WA +Q  + H    Y  L+  L   + +   +A+ EEM K       T  F IL+R 
Sbjct: 105 FFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIA-PNTFSFNILIRS 163

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           FA  R    A+   + M +  C+PD   F  L+D LCK    ++A ++F EM    F P 
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223

Query: 243 LRHF-TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
            R   T+++    K  ++ EA+ V  QM+  GF PD + YN ++ G A+ G   +A ++L
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M  K C P   +Y +L+ +LC+   +E A   F  M  SG   + V YT+LI GF KS
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            ++     + D M++ G  P+ +T+  ++    K    E+  +   EM + GC P+V  Y
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
             +I+   K+G +  A  +   M A    P + +++ ++ GF   G L EA +   E+  
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL-- 461

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVE-MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
               S+P      +L+  L     VE    D++         L+       I  L   G 
Sbjct: 462 DKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGR 521

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           + EAC     M+     P   T+  L+ GL
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGL 551



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 205/452 (45%), Gaps = 16/452 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A  +P+ +     +  +I  L K   F       EEM +   KP ++T   +  +++  +
Sbjct: 359 AGYRPDVI----THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVT---YTTIIQGLS 411

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLR 244
               V  A  ++  M  +GC PD   + CLLD  CK   + EAA+L DE+ +    P+L+
Sbjct: 412 KIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQ 471

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVYNNLLSGYAQMGKMTDAFELLKE 303
            ++SL+ G C  G +      L +   A  E  D  +  +++ G  + G++ +A  + + 
Sbjct: 472 LYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQR 531

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV---EMERSGCEADVVTYTTLISGFCK 360
           M  +GC P+A +Y +LI  LCR  +     RAF    ++E  G   D VTYT L  G CK
Sbjct: 532 MVSEGCKPDATTYNILINGLCR-SRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCK 590

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++DR  ++L+    RG   + + Y  +      + +++  V L  EM + G  PD + 
Sbjct: 591 IGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAA 650

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y  +I    K  +L++A   ++EM      P   ++  +V      G + EA   F+ M+
Sbjct: 651 YCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGML 710

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            RG L         AL++   +A KV+ A  ++  ++++G              L  +G 
Sbjct: 711 ARGELVGSVM-IYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            ++A     +M      P   TF  ++ GL+K
Sbjct: 770 TEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 147/306 (48%), Gaps = 5/306 (1%)

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           + AGF+ D+  YN L++        +  + + +EM + G  PN  S+ +LI++  R  + 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           ++A   F  M+R  C+ D+ T+  L+   CK+   ++ +E+   M+  G +P     LH 
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRA-LHT 229

Query: 390 MLAHE--KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            +     K + ++E  E+ G+M K G  PD   YN +I    K G  +EA+ V + M A 
Sbjct: 230 AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAK 289

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
           +  P   ++ ++V+     G L  A E F+ M   G    P      +L++   ++ +++
Sbjct: 290 ACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGF--RPNSVIYTSLIHGFAKSGRMK 347

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A  ++  +V  G   +V   T+ I  L  +G+ ++A     +MM     P   T+  ++
Sbjct: 348 EACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTII 407

Query: 568 RGLKKL 573
           +GL K+
Sbjct: 408 QGLSKI 413



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 2/174 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTS 248
           V +A+ +  EM + G  PD   + C+++ L K   +++A K FDEM  +  KP++  +T+
Sbjct: 629 VDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L+   C  G + EA +    M   G     +++Y+ L+ G+ +  K+  A +L ++M  +
Sbjct: 689 LVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           G  P A +   L   L R  K E+A     EM   G      T+T ++ G  KS
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKS 802


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 203/413 (49%), Gaps = 4/413 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL+     A M+ +A  +  E    GC  D   +  ++D L KN  ++EA  L +++ 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
                P++  + +LL G CK G+L EA  +L ++ D G  PD+V Y +L+ G  +  +  
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A++L KEM  +G   +   YT LI+ L +  K+ +A+  +  M   GC  DVVT +T+I
Sbjct: 122 EAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 181

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G CK+ +I     I  SM  RG+ PN++ Y  ++    K  +++  +E++ +M+K  C 
Sbjct: 182 DGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 241

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD   YN++I   CK G++  A   ++EM  A   P   ++ +++ GF   G    AC  
Sbjct: 242 PDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGV 301

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F +M       +P   T   L++ L + +++  A   +  +  +GC  + + ++  +  L
Sbjct: 302 FDDMSSS--RCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGL 359

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             +G ++  C    D M+   +    T  +L+  L K      A  +   +RK
Sbjct: 360 CKSGKLEGGCML-FDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRK 411



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 188/409 (45%), Gaps = 14/409 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++  L+K +K     ALME++      P + T   +  L+        +++AI++L 
Sbjct: 37  YTTIVDWLAKNKKIQEAVALMEKITANGCTPTIAT---YNALLNGLCKMGRLEEAIDLLR 93

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++   GC PD   +  L+D L K     EA KLF EM  R        +T+L+ G  + G
Sbjct: 94  KIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAG 153

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ +A  V   M   G  PD+V  + ++ G  + G++  A  + K M  +G  PN   Y+
Sbjct: 154 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 213

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC+  KM+ A     +M+++ C  D +TY  LI G CKS  +       D M++ 
Sbjct: 214 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEA 273

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+  TY  ++    K    +    +  +M    C P+V  Y  +I   CK  +L +A
Sbjct: 274 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKA 333

Query: 438 VNVWNEMEAASLSPGTDSFVV--MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
              +  M+     P  DSFV   +V G    G L   C  F EM   G+ ++    T   
Sbjct: 334 SLYYQHMKERGCPP--DSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQ---TRTR 388

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L+  L +A +V+ A  +++ I  +G   + YA+   I +L  +G V E 
Sbjct: 389 LIFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEG 436



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 198/433 (45%), Gaps = 6/433 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  LI  L K        +L +E        I    +  ++   A  + +++A+ +++++
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCT-IDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC P    +  LL+ LCK   ++EA  L  ++ +    P +  +TSL+ G  K+ + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M   G   D V Y  L+ G  Q GK+  A  + K M  +GC P+  + + +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+  ++  A R F  ME  G   + V Y+ LI G CK+RK+D   E+L  M +   
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    K  ++        EM + GC PDV  YN++I   CK G    A  
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACG 300

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V+++M ++  SP   ++  ++ G   +  L +A  Y++ M  RG    P      +L++ 
Sbjct: 301 VFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERG--CPPDSFVYSSLVDG 358

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L ++ K+E    ++  +   G   N    T  I  L     V EA S   + +  + MP 
Sbjct: 359 LCKSGKLEGGCMLFDEMERSGVA-NSQTRTRLIFHLCKANRVDEAVSL-FNAIRKEGMPH 416

Query: 560 PDTFAKLMRGLKK 572
           P  +  ++  L K
Sbjct: 417 PYAYNSIISALIK 429



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 4/340 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  L K ++    + L +EM      L  T  +  L+R    A  + +A  V   M
Sbjct: 107 YTSLIDGLGKKKRSFEAYKLFKEMASRGLAL-DTVCYTALIRGLLQAGKIPQASSVYKTM 165

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC PD      ++D LCK   +  A ++F  M  R   P+   +++L++G CK  K+
Sbjct: 166 TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 225

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L QMK A   PD + YN L+ G  + G +  A     EM   GC P+  +Y +L
Sbjct: 226 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNIL 285

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+    + A   F +M  S C  +VVTY TLISG CK R++ +       M +RG 
Sbjct: 286 ISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGC 345

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+   Y  ++    K  +LE    L  EM + G     +   ++  L CK   + EAV+
Sbjct: 346 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHL-CKANRVDEAVS 404

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
           ++N +    + P   ++  ++   +  G + E    ++EM
Sbjct: 405 LFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 123/257 (47%), Gaps = 17/257 (6%)

Query: 117 AGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KP 169
           AG +G    ++ S +     PN V    VY ALI  L K RK      ++ +M+K    P
Sbjct: 187 AGRIGAAVRIFKSMEARGLAPNEV----VYSALIHGLCKARKMDCALEMLAQMKKAFCTP 242

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
             IT   + IL+     +  V  A    DEM + GC+PD + +  L+   CK  +   A 
Sbjct: 243 DTIT---YNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 299

Query: 230 KLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
            +FD+M   R  P++  + +L+ G CK  +L +A      MK+ G  PD  VY++L+ G 
Sbjct: 300 GVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGL 359

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            + GK+     L  EM R G   N+ + T LI  LC+  +++EA   F  + + G     
Sbjct: 360 CKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG-MPHP 417

Query: 349 VTYTTLISGFCKSRKID 365
             Y ++IS   KS K++
Sbjct: 418 YAYNSIISALIKSGKVN 434



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 2/258 (0%)

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++++LI  L +   + +A+    E   +GC  D+ TYTT++    K++KI     +++ +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              G  P   TY  ++    K   LEE ++L+ ++   GC PDV  Y  +I    K    
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  ++ EM +  L+  T  +  ++ G L  G + +A   +K M  +G +  P   TL 
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV--PDVVTLS 178

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            +++ L +A ++  A  ++  +  +G   N   ++  IH L     +  A      M  A
Sbjct: 179 TMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 238

Query: 555 DVMPQPDTFAKLMRGLKK 572
              P   T+  L+ GL K
Sbjct: 239 FCTPDTITYNILIDGLCK 256


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 217/434 (50%), Gaps = 15/434 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y AL+  L    +     AL E M K    P ++T   +  L+  F     + +A+++ D
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVT---YNTLLHGFCKVGELDEALKIFD 69

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
              K G  PD   +  L++  CK   + EA ++   M  E   P +  + SL+ G CK G
Sbjct: 70  GAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNG 129

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA-QMGKMTDAFELLKEMRRKGCDPNANSY 316
           ++ EA+ ++V   D GF P+++ Y+ L+SG   ++  +++A +L   + ++G +P   +Y
Sbjct: 130 RVDEARMLIV---DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTY 186

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +LI  L + +++ EA   F  + + G E D +TYT  I G CK+ +++    +L  M +
Sbjct: 187 NILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDE 246

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G +P+ +++  ++    K++ ++E   L+  M   GC P+  ++N +I   C+ G+ K+
Sbjct: 247 KGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKK 306

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLG---QGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           A+  + EM    + P   ++ ++V G      +G + EA   F  M+ +G    P   T 
Sbjct: 307 AMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKG--RVPDVVTY 364

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            AL++ L +A K++ A+ +   +  KGC  NVY +   I  L     V EA    + M++
Sbjct: 365 SALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVE 424

Query: 554 ADVMPQPDTFAKLM 567
              +P   T+  ++
Sbjct: 425 KGCVPDTITYGTII 438



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 170/332 (51%), Gaps = 7/332 (2%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           N V     Y +L+  L K  +      L+ + +   P +IT    +  + R    R V +
Sbjct: 110 NLVPDVVTYNSLVNGLCKNGRVDEARMLIVD-KGFSPNVITYSTLISGLCR--ELRGVSE 166

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
           A+++   + K G EP+   +  L+D L K   V EA +LF  + +   +P    +T  + 
Sbjct: 167 ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G++ +A  +L  M + G  PD+V +N +++G  +  ++ +A  LL  M  KGC P
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSP 286

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE-- 369
           NA S+  LI   CR  K ++A   F EM + G +  VVTY  L+ G CK+R+  R  E  
Sbjct: 287 NAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAI 346

Query: 370 -ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + D+MI++G +P+ +TY  ++    K  +L++   L+G M   GC+P+V  YN +I   
Sbjct: 347 TLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGL 406

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           C L ++ EA+ ++  M      P T ++  ++
Sbjct: 407 CGLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 174/339 (51%), Gaps = 8/339 (2%)

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +  F P+   + +LL G C  G++ +A+ +  +M  AG+ PD+V YN LL G+ ++G++ 
Sbjct: 3   KHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELD 62

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A ++     ++G  P+  +Y  LI   C+ +K++EA R    M       DVVTY +L+
Sbjct: 63  EALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLV 122

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIG 413
           +G CK+ ++D    ++   + +G  PN +TY  ++  L  E +  + E ++L G + K G
Sbjct: 123 NGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELR-GVSEALKLFGSVLKQG 178

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             P+V  YN++I    K   + EA  +++ +    L P   ++ V + G    G + +A 
Sbjct: 179 YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDAL 238

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
              K+M  +G +  P   +  A++N L + ++V+ A+ + S +  KGC  N  ++   I 
Sbjct: 239 LMLKDMDEKGCV--PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLIC 296

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                G  K+A +   +M+   V P   T+  L+ GL K
Sbjct: 297 GQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 9/266 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
            Y      Y  LI  L K  +    + L   + K   +P  IT  VF+        A  V
Sbjct: 178 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI---DGLCKAGRV 234

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSL 249
           + A+ +L +M + GC PD      +++ LCK   V EA  L   M  +   P+   F +L
Sbjct: 235 EDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 294

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA---QMGKMTDAFELLKEMRR 306
           + G C+ GK  +A     +M   G +P +V YN L+ G     Q G++ +A  L   M  
Sbjct: 295 ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 354

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG  P+  +Y+ LI  L +  K+++A R    ME  GC  +V TY +LISG C   K+D 
Sbjct: 355 KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDE 414

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLA 392
             E+  +M+++G +P+ +TY  I+ A
Sbjct: 415 ALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 136/270 (50%), Gaps = 6/270 (2%)

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR+ G  PN  +Y  L+  LC   +M +A   +  M ++G   DVVTY TL+ GFCK  +
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +D   +I D  ++RG +P+ +TY  ++    K ++L+E   ++  M     VPDV  YN 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ-GCLIEACEYFKEMVGR 482
           ++   CK G + EA  +  +      SP   ++  ++ G   +   + EA + F  ++ +
Sbjct: 121 LVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G    P+  T   L++ LL+  +V  A +++S +V  G E +   +T++I  L   G V+
Sbjct: 178 GY--EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +A     DM +   +P   +   ++ GL K
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCK 265


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 209/427 (48%), Gaps = 30/427 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK---PQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  L+K L K+R+    +  +E MR+ +   P ++T   F  L++   +A  V +A EV 
Sbjct: 348 YNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVT---FSTLIQGLCNAGRVNQAWEVY 404

Query: 198 DEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER------------------ 238
           + M    G  P+ F +  LL+ LCK    +   + F++M ER                  
Sbjct: 405 ERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFL 464

Query: 239 ----FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                +P+L  + +L+ G  K G + +A  +L  M ++G  PD++ +N++L G  +  ++
Sbjct: 465 MVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRI 524

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            DA  + K    +GC PN  +Y+ LI  L +M KM+EA +   +M   GC A+ VTY+T+
Sbjct: 525 LDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTV 584

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G  K  +++    +L  M   G LP+ +TY  ++    K++ L E V L+ EM + G 
Sbjct: 585 VDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF 644

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P V  Y  +    C+ G   EAV + + M A   +P   ++  +V G    G + EA  
Sbjct: 645 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALG 704

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           YF++M  R  + AP      AL++ L +A +++ A +    ++  G   +V  ++I I+ 
Sbjct: 705 YFEKM-ARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILING 763

Query: 535 LFSNGHV 541
           L   G +
Sbjct: 764 LCDAGRI 770



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/573 (24%), Positives = 257/573 (44%), Gaps = 82/573 (14%)

Query: 73  DVEKIFRILKKFHSR--LPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           ++E  FR++ +   R  +P +E+   H+  VL   L E  + R  +A    ++  +    
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEI---HT--VLLHALCE--LGRVDEAWFF-FQQVLLIGF 172

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            P+ V    +   L K+  ++   G V  L+ E     P + T   F I +   + A  +
Sbjct: 173 TPDAVTYNTMVDGLYKA-GRLEAAGMVLQLLAE-SFSSPTVFT---FTIAVDGLSKAGNL 227

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
             A E  D MP+ G  P+   +  L+D LCK   +  A  L  +  +  +  +  F+SLL
Sbjct: 228 TGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRD--KNSQAGMFAFSSLL 285

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G C+  +L EA  +L  M      P++V +N+L++G  Q  ++ +AFEL   M+  GC 
Sbjct: 286 HGLCQAHRLEEAIQLLKAMPCV---PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCS 342

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYE 369
            +  +Y +L++ LC++ ++ EA R    M R+ GC  +VVT++TLI G C + ++++ +E
Sbjct: 343 ADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWE 402

Query: 370 ILDSMIQ-RGILPNQLTYLHIMLAHEKKEE---LEECVELMGE----------------- 408
           + + M+   GI PN+ TY  ++    K  +   LE+C E M E                 
Sbjct: 403 VYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVD 462

Query: 409 --MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M ++ C P +  YN ++    K G +++A+ +   M  + LSP   +F  ++ G   +
Sbjct: 463 FLMVQV-CRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKE 521

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
             +++A   FK  + RG    P   T   L++ L +  K++ A  + + +V  GC  N  
Sbjct: 522 QRILDAHNVFKRALERG--CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTV 579

Query: 527 AWTIWIHSLFSNGHVKEAC--------SYCL---------------------------DM 551
            ++  +  L   G +++A         + CL                           +M
Sbjct: 580 TYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM 639

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           ++A   P   T+  L  GL +      A EI +
Sbjct: 640 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILD 672



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 202/479 (42%), Gaps = 82/479 (17%)

Query: 131  QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            +PN V     Y  LI  LSKM K      L+ +M +   +  T     ++       RM 
Sbjct: 540  RPNVV----TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM- 594

Query: 191  KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            + A+ VL +M   GC PD   +  L+D   K   ++EA  L  EM E  F PS+  +T+L
Sbjct: 595  EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 654

Query: 250  LYGWCKEGKLVEAKYVLVQMKDAG---------------------------FE------- 275
             +G C+ G+  EA  +L  M   G                           FE       
Sbjct: 655  CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 714

Query: 276  --PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
              P ++ Y+ L+ G  + G++ +A+E L+ M R G  P+  ++++LI  LC   +++   
Sbjct: 715  VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 774

Query: 334  RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT-------- 385
              F  M   GC+AD+  Y  +I+ +C   +    Y +L+ M   GI  N +T        
Sbjct: 775  ELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKAL 834

Query: 386  -----------YLHIMLAHEKKEEL---------------EECVELMGEMRKIGCVPDVS 419
                       Y H  +  + ++E+               E+ +EL+  M   G  PD  
Sbjct: 835  CGNDRIDEAVSYFH-SIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDAC 893

Query: 420  NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            NY  V+    K G  + A  +  EM +   SP   ++ +M+ G      L  AC+YF+EM
Sbjct: 894  NYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEM 953

Query: 480  VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
            + + L   P      +L+++  +A KV+   D W  + + G E  +  ++  + SL  N
Sbjct: 954  LRKNL--KPDAIVYSSLIDAFCKADKVD---DAWKLLRSSGIEPTITMYSTMVDSLCKN 1007



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 194/447 (43%), Gaps = 43/447 (9%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  LI    K ++      L+ EM +    P ++T   +  L      +    +A+E+LD
Sbjct: 616  YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT---YTTLCHGLCRSGRFDEAVEILD 672

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--ERFKPSLRHFTSLLYGWCKE 256
             M   GC P+   +  ++D LCK   V EA   F++M   E   P +  +++L+ G CK 
Sbjct: 673  YMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKA 732

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            G++ EA   L +M  AG  PD+V ++ L++G    G++    EL   M  +GC  +  +Y
Sbjct: 733  GRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAY 792

Query: 317  TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
              +I A C   +   A     EM+  G   + VT+  +I   C + +ID       S+ +
Sbjct: 793  NAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPE 852

Query: 377  RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
                 ++++Y  ++ +       E+ +EL+  M   G  PD  NY  V+    K G  + 
Sbjct: 853  D--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEV 910

Query: 437  AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
            A  +  EM +   SP   ++ +M+ G      L  AC+YF+EM+ + L   P      +L
Sbjct: 911  AAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNL--KPDAIVYSSL 968

Query: 497  LNS------------LLRAQKVEMAKDVWSCIV--------------------TKGCELN 524
            +++            LLR+  +E    ++S +V                    +K CE  
Sbjct: 969  IDAFCKADKVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPG 1028

Query: 525  VYAWTIWIHSLFSNGHVKEACSYCLDM 551
            ++ WT    +  + G V EA     D+
Sbjct: 1029 IHIWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 207/488 (42%), Gaps = 62/488 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L +  +      L+EEM  R   P  +T   +  L+         K+A  +L+
Sbjct: 39  YSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVT---YNTLVNALLGQGRAKEAFSLLE 95

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M   GC P+   FG ++  LCK   ++ A ++ DEM +R F P +   T LL+  C+ G
Sbjct: 96  RMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELG 155

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA +   Q+   GF PD V YN ++ G  + G++  A  +L+ +      P   ++T
Sbjct: 156 RVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFT 215

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL-DSMIQ 376
           + +  L +   +  A   F  M ++G   + VTY  LI G CK+ K+D    +L D   Q
Sbjct: 216 IAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQ 275

Query: 377 RGI----------------------------LPNQLTYLHIMLAHEKKEELEECVELMGE 408
            G+                            +PN + +  +M    +   ++E  EL   
Sbjct: 276 AGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDV 335

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEA---VNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           M++ GC  DV  YN++++  CKL  + EA   V +    E    SP   +F  ++ G   
Sbjct: 336 MKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGC--SPNVVTFSTLIQGLCN 393

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV--------EMAKDVW---- 513
            G + +A E ++ MV    +S P   T   LL  L +A           +M +  W    
Sbjct: 394 AGRVNQAWEVYERMVAVEGIS-PNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSS 452

Query: 514 ---------SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
                      ++ + C   +  +   +  L  +G V++A      M+++ + P   TF 
Sbjct: 453 SWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFN 512

Query: 565 KLMRGLKK 572
            ++ GL K
Sbjct: 513 SVLDGLCK 520



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 156/327 (47%), Gaps = 12/327 (3%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +  L+ G CK G++ +A     +    GF P +V Y+ ++ G  +  ++    +LL+EM 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +GC PNA +Y  L+ AL    + +EA      M  +GC  +++T+  +I G CK  +I+
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIE 123

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKE--ELEECVELMGEMRKIGCVPDVSNYNV 423
             + ++D M+ RG +P+    +H +L H   E   ++E      ++  IG  PD   YN 
Sbjct: 124 AAFRVVDEMVDRGFVPD--VEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNT 181

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++    K G L+ A  V   +  +  SP   +F + V G    G L  A E+F  M   G
Sbjct: 182 MVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTG 241

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +  +P   T  AL++ L +A K+++A      +  K  +  ++A++  +H L     ++E
Sbjct: 242 V--SPNTVTYDALIDGLCKAGKLDIA---LGLLRDKNSQAGMFAFSSLLHGLCQAHRLEE 296

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL 570
           A      M     +P    F  LM GL
Sbjct: 297 AIQLLKAM---PCVPNVVCFNSLMNGL 320



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 188/414 (45%), Gaps = 19/414 (4%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           +L+     A  V  A     +  ++G  P    +  ++D LC+++ V +  KL +EM  R
Sbjct: 6   VLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGR 65

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P+   + +L+     +G+  EA  +L +M   G  P+++ +  ++ G  + G++  A
Sbjct: 66  GCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAA 125

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           F ++ EM  +G  P+   +TVL+ ALC + +++EA   F ++   G   D VTY T++ G
Sbjct: 126 FRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDG 185

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
             K+ +++    +L  + +    P   T+   +    K   L    E    M + G  P+
Sbjct: 186 LYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPN 245

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              Y+ +I   CK G+L  A+ +  +  + +   G  +F  ++HG      L EA +  K
Sbjct: 246 TVTYDALIDGLCKAGKLDIALGLLRDKNSQA---GMFAFSSLLHGLCQAHRLEEAIQLLK 302

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            M        P      +L+N L +A++V+ A +++  +   GC  +V  + I +  L  
Sbjct: 303 AMP-----CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCK 357

Query: 538 NGHVKEACSYCLDMMDAD-VMPQPDTFAKLMRGLK---------KLYNRQIAAE 581
              + EA  +   M   +   P   TF+ L++GL          ++Y R +A E
Sbjct: 358 LRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVE 411



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 42/341 (12%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y ALI  L K  +    +  +E M +    P ++T   F IL+     A  +   +E+  
Sbjct: 722  YSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVT---FSILINGLCDAGRIDTGLELFC 778

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR---------------------E 237
             M + GC+ D + +  +++A C       A  L +EM+                     +
Sbjct: 779  GMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGND 838

Query: 238  RFKPSLRHFTS-------------LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            R   ++ +F S             L+       +  +A  +L  M   G  PD   Y  +
Sbjct: 839  RIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTV 898

Query: 285  LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
            + G  + G    A +LL+EMR +G  P+  +YT++I  L + +++  A   F EM R   
Sbjct: 899  MDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNL 958

Query: 345  EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
            + D + Y++LI  FCK+ K+D  +++L S    GI P    Y  ++ +  K    ++ +E
Sbjct: 959  KPDAIVYSSLIDAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDKALE 1015

Query: 405  LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
            ++ EM+   C P +  +  +       G + EAV + N+++
Sbjct: 1016 VIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 146/304 (48%), Gaps = 10/304 (3%)

Query: 110  VINRCGDAGNL--GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
            +IN   DAG +  G   +   +++      Y  Y A+I +     +F A +AL+EEM+  
Sbjct: 760  LINGLCDAGRIDTGLELFCGMAERGCKADIY-AYNAMINAYCLKGEFSAAYALLEEMKTH 818

Query: 168  KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
                  T    I+++       + +A+     +P+  C  DE  +  L+ +L  +   ++
Sbjct: 819  GIAK-NTVTHGIVIKALCGNDRIDEAVSYFHSIPE-DCR-DEISYNTLITSLVASRRSEQ 875

Query: 228  AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            A +L   M  +   P   ++ +++ G  K G    A  +L +M+  G  PD+  Y  ++S
Sbjct: 876  ALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMIS 935

Query: 287  GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            G ++  ++  A +  +EM RK   P+A  Y+ LI A C+ +K+++A +    +  SG E 
Sbjct: 936  GLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGIEP 992

Query: 347  DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             +  Y+T++   CK+R  D+  E++  M  +   P    +  +  A+  +  ++E V+L+
Sbjct: 993  TITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLV 1052

Query: 407  GEMR 410
             +++
Sbjct: 1053 NDLQ 1056


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 230/513 (44%), Gaps = 65/513 (12%)

Query: 102 LRPGLTERVIN---RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW 158
           L P L+  ++N   R      LG+R+++W +++ ++  S+  +  +I  L+K   F   W
Sbjct: 58  LAPFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDMLAKDDGFDTYW 116

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF-------- 210
            ++EE++    Q I    F +L+  +A + M +KA+E   +M  +GC+PD F        
Sbjct: 117 KILEELKNSNIQ-IPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHV 175

Query: 211 ---------------------------VFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
                                       F  LL+ LCKN    +A K+FDEM ++   P+
Sbjct: 176 MVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPN 235

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              +T +L G C+  +  +   +L  MK +G  PD +  N LL G+ ++G++ +AF LL+
Sbjct: 236 TMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQ 295

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
              ++G       Y+ LI  L R ++ +E      +M ++G E DVV YT LI GFC+  
Sbjct: 296 LFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +D    +L+ M QRG+ P+   Y  ++        L++   L  E+ K  C P    Y 
Sbjct: 356 MVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYT 415

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           ++I   C+ G L EA  ++N+ME    SP   +F  ++ G    G L EA   F +M   
Sbjct: 416 ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM--- 472

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
                 + G   +L   L +     M       +V + CE               +G + 
Sbjct: 473 ------EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCE---------------SGLIL 511

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +A    + + D+ V+P   T+  L+ G  K  N
Sbjct: 512 KAYKLLMQLADSGVVPDIMTYNVLINGFCKAKN 544



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 192/401 (47%), Gaps = 20/401 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALIK    +       +L  E+ K      T+  + IL+       ++ +A ++ ++M
Sbjct: 379 YNALIKGFCDVGLLDKARSLQLEISKNDC-FPTSCTYTILICGMCRNGLLDEARQIFNQM 437

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL--------------RHF 246
              GC P    F  L+D LCK   ++EA  LF +M     PSL                 
Sbjct: 438 ENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASL 497

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +++   C+ G +++A  +L+Q+ D+G  PDI+ YN L++G+ +   +  AF+L +E++ 
Sbjct: 498 QTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQL 557

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG  P++ +Y  LI    R+++ E+A R   +M ++GC      Y  L++  C+  K+  
Sbjct: 558 KGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSV 617

Query: 367 CYEILDSMIQRGILPNQLT-YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
            + +    ++   LP+Q    L +   H +K ELE+ V  + EM       +++ Y + +
Sbjct: 618 AFSLWLKYLRS--LPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWL 675

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+    +EA+ ++  ++   +     S V++++G    G L  A + F   + +G +
Sbjct: 676 IGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFM 735

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
             P+      LL SL+   K++ A D+ + + + G +L+ Y
Sbjct: 736 LMPR--ICNQLLRSLILQDKMKHALDLLNRMNSAGYDLDEY 774



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 198/436 (45%), Gaps = 53/436 (12%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           YV     Y +LI  L + +++  V     +M K   +P ++   ++ IL+R F    MV 
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV---LYTILIRGFCEVGMVD 358

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
            A+ +L++M + G  PD + +  L+   C    + +A  L  E+ +    P+   +T L+
Sbjct: 359 YALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILI 418

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR----- 305
            G C+ G L EA+ +  QM++ G  P I+ +N L+ G  + G++ +A  L  +M      
Sbjct: 419 CGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNP 478

Query: 306 ------RKGCD--PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
                  +G D   +  S   +++ LC    + +A +  +++  SG   D++TY  LI+G
Sbjct: 479 SLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLING 538

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           FCK++ I+  +++   +  +G  P+ +TY  ++    + +  E+   ++ +M K GC P 
Sbjct: 539 FCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPS 598

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
            + Y  ++  +C+ G+L  A ++W +    SL    D  + +      +G L +A     
Sbjct: 599 SAVYKCLMTWSCRKGKLSVAFSLWLKY-LRSLPSQEDETLKLAEEHFEKGELEKAVRCLL 657

Query: 478 EMVGR--------------GLLSAPQ-------YGTLK------------ALLNSLLRAQ 504
           EM  +              GL  A +       +  LK             L+N L +  
Sbjct: 658 EMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDG 717

Query: 505 KVEMAKDVWSCIVTKG 520
            +EMA D++   + KG
Sbjct: 718 NLEMAVDIFLYTLEKG 733


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 203/436 (46%), Gaps = 12/436 (2%)

Query: 57  CN-NTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCG 115
           CN N   T GS++      E I   L  +      +E AL  S V L   +  +++ R  
Sbjct: 81  CNENDIRTKGSNHAVGILHEAIMANLNAYDD----MEKALDESSVDLTTPVVCKILQRLQ 136

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS----KMRKFGAVWALMEEMRKEKPQL 171
                 +R++ WA  Q +Y H    Y  +I  LS    K ++F  V  +++ M++    +
Sbjct: 137 YEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTV 196

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           +  +V + ++R++    +         +  +   +P+   F  LLDALCK   VKE   L
Sbjct: 197 VLVDVLLEILRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEAL 256

Query: 232 FDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
              MR R KP    F  L +GWC+     +A  +L +M +AG +P+   Y   +  + Q 
Sbjct: 257 LRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQA 316

Query: 292 GKMTDAFELLKEMRRKGCD---PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
           G + +A +L   M  KG     P A ++ ++I AL + +K EE       M  +GC  DV
Sbjct: 317 GMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDV 376

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY  +I G C + K+D  Y+ LD M  +G  P+ +TY   +    +  + +E ++L G 
Sbjct: 377 STYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGR 436

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M +  C P V  YN++I +  ++ +   A N W EM+        +++  M++G      
Sbjct: 437 MVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHR 496

Query: 469 LIEACEYFKEMVGRGL 484
             EAC   +E+V +GL
Sbjct: 497 AKEACFLLEEVVNKGL 512



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 10/320 (3%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+I  +N LL    + G + +   LL+ MR +   P+AN++ VL    CR+   ++A +
Sbjct: 231 QPEINAFNMLLDALCKCGLVKEGEALLRRMRHR-VKPDANTFNVLFFGWCRVRDPKKAMK 289

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIML 391
              EM  +G + +  TY   I  FC++  +D   ++ D MI +G     P   T+  +++
Sbjct: 290 LLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIV 349

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K ++ EEC EL+G M   GC+PDVS Y  VI   C   ++ EA    +EM      P
Sbjct: 350 ALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPP 409

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLLRAQKVEMA 509
                +V  + FL   C     +   ++ GR + S  AP   T   L++        + A
Sbjct: 410 D----IVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGA 465

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            + W+ +  + C  +V  +   I+ LF     KEAC    ++++  +      F   +  
Sbjct: 466 FNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMR 525

Query: 570 LKKLYNRQIAAEITEKVRKM 589
           L ++ N +   +++E ++K 
Sbjct: 526 LSEVGNLKAIHKVSEHMKKF 545


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 184/382 (48%), Gaps = 4/382 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTS 248
           V  A+ VLD M   GC PD   +  LL A CK    ++A +L D MR E  +P+   +  
Sbjct: 179 VADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNV 238

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   C+EG + +A+ +L  +   G +P+ V YN +L G+  + +  DA E+L EM R+ 
Sbjct: 239 IIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVREN 298

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +  V+I  LCR   +++      +M + GC A+VVTY  +ISG C+   +D   
Sbjct: 299 CPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSAL 358

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+L +M   G  P+ +TY  ++      +  E+  ELM +M +   +PD S +N +I   
Sbjct: 359 ELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFW 418

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+ G + +A  V+ +M     +P + ++  ++ G    G + +A E   EM  +G  +  
Sbjct: 419 CQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDK 478

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            Y   + L  SL +  K+E    V   +   G       +   +  L  NG    A    
Sbjct: 479 MY---RVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVL 535

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
            DM+    MP   T+  L+ GL
Sbjct: 536 ADMVSCGCMPDESTYIILIEGL 557



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 190/413 (46%), Gaps = 53/413 (12%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+++  K R +     L++ MR E  +P  +T  V +  M R      V +A E+L
Sbjct: 200 TYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGD---VDQARELL 256

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           + +P  GC+P+   +  +L   C      +A ++ DEM RE   P+      ++   C++
Sbjct: 257 NSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRK 316

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G L +    L +M   G   ++V YN ++SG  + G +  A ELL  M+  GC P+  +Y
Sbjct: 317 GLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTY 376

Query: 317 TVLIQALCRMEKMEEANR-----------------------------------AFVEMER 341
             +++ LC  ++ E+A                                      F +M  
Sbjct: 377 NTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPE 436

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  +  TY+T+I G  K+ K+++  E+L+ M  +G   +++ Y  +  +  K++++EE
Sbjct: 437 KGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEE 495

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            V+++ +++  G  P    YN V+   C+ G+   A++V  +M +    P   ++++++ 
Sbjct: 496 VVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIE 555

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           G   +G   EA E    +  R +LS           NSL++ + + + +++ S
Sbjct: 556 GLFYEGYSKEARELLSRLCSRDVLS-----------NSLIKNEALLLDQNIRS 597



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 178/403 (44%), Gaps = 39/403 (9%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH-FTSLLYGWCKEGKLVEA 262
           G E     +G L+D  C+   +++A ++   M    + S  +    L++  C+ G++ +A
Sbjct: 123 GPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADA 182

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             VL  M   G  PD+V YN LL    +      A EL+  MR +GC+PN  +Y V+I A
Sbjct: 183 LVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDA 242

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           +CR   +++A      +   GC+ + V Y T++ GFC   +     EILD M++    PN
Sbjct: 243 MCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPN 302

Query: 383 QLT-------------------YLHIMLAHE----------------KKEELEECVELMG 407
           + T                   YL  M  H                 ++  ++  +EL+ 
Sbjct: 303 EATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLS 362

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            M+  GC PD+  YN V++  C     ++A  +  +M      P   +F  ++  +  +G
Sbjct: 363 NMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKG 422

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            +++A E FK+M  +G    P   T   ++  L +A K+E A ++ + +  KG   +   
Sbjct: 423 LILQAFEVFKQMPEKG--CNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KM 479

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           + +   SL     ++E       + D+ + PQ   +  ++ GL
Sbjct: 480 YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGL 522



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 132/300 (44%), Gaps = 15/300 (5%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN--SYTVLIQALCRMEKMEEAN 333
           PD+ + N L+    + G+  DA  +++      C P A   +Y  L+   CR   +E+A 
Sbjct: 94  PDVPLANRLVRDLCRRGRPADAARVVE-----ACGPEATAATYGALVDGYCRAGLLEDAR 148

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R    M      +    +  LI   C+  ++     +LD M+ RG  P+ +TY  ++ A 
Sbjct: 149 RVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAA 208

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K     + +EL+  MR  GC P+   YNV+I   C+ G++ +A  + N + +    P T
Sbjct: 209 CKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNT 268

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA---QKVEMAK 510
            ++  ++ GF      ++A E   EMV       P   TL  ++N+L R    QKV +  
Sbjct: 269 VNYNTVLKGFCSIERWVDADEILDEMVREN--CPPNEATLNVIINTLCRKGLLQKVTLYL 326

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +  S     GC  NV  +   I  +   G+V  A     +M      P   T+  +++GL
Sbjct: 327 EKMS---KHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGL 383



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 5/190 (2%)

Query: 413 GCVPDVS--NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
            C P+ +   Y  ++   C+ G L++A  V   M A   +    +   ++H    +G + 
Sbjct: 121 ACGPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVA 180

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A      M+ RG   AP   T   LL +  + +    A ++   +  +GCE N   + +
Sbjct: 181 DALVVLDGMLCRG--CAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNV 238

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKM 589
            I ++   G V +A      +      P    +  +++G   +     A EI  E VR+ 
Sbjct: 239 IIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVREN 298

Query: 590 AAERQITFKM 599
               + T  +
Sbjct: 299 CPPNEATLNV 308


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 196/394 (49%), Gaps = 4/394 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +LI  L +  +    ++L E+M  +  Q+    V+  L++ F      +   ++  EM  
Sbjct: 487 SLIDGLGRRGRVDDAYSLYEKML-DSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVH 545

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
            GC PD  +    +D + K   V++   LF+E++ +   P +R ++ L++G  K G   E
Sbjct: 546 RGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRE 605

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
              +  +MK+ G   D++ YN ++ G+ + GK+  A++LL+EM+ KG  P   +Y  ++ 
Sbjct: 606 TYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVD 665

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            L ++++++EA   F E +  G + +VV Y++LI GF K  +ID  Y IL+ ++Q+G+ P
Sbjct: 666 GLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 725

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  T+  ++ A  K EE++E       M+ + C P+   Y+++I   C + +  +A   W
Sbjct: 726 NSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFW 785

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM+   L P   ++  M+ G    G ++EA   F      G    P      A++  L 
Sbjct: 786 QEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASG--GVPDSACYNAMIEGLS 843

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            A K   A  V+     KGC +N     + + +L
Sbjct: 844 SANKAMDAYIVFEETRLKGCRVNSKTCVVLLDAL 877



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 230/452 (50%), Gaps = 6/452 (1%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           P +E AL     + +P +   V+ R  D  N+ ++Y+ W  ++    H  +VY A +  +
Sbjct: 85  PDVEEALNVFDEMSQPEVIVGVMKRLKDV-NVAFQYFRWVERKTQQAHCPEVYNAFLMVM 143

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
           ++ R    +  ++EEM      L +  V V L+  F  +  +K+A  V++ M K+   P 
Sbjct: 144 ARTRNLDYLEQILEEMSVAGFGL-SNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPA 202

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
              +  L+ AL   +       LF +M+E  ++ ++  FT+L+  + +EG++  A  +L 
Sbjct: 203 FSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLD 262

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +MK   F  D+V+YN  +  + ++GK+  A++   EM+ +G  P+  +YT LI  LC+  
Sbjct: 263 EMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKAR 322

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           +++EA   F E++ +     V  Y T+I G+  + K D  Y +L+   ++G +P+ + Y 
Sbjct: 323 RLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYN 382

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            I+    +K ++EE + +  EMR+    P+++ YN++I + CK GEL+ A+ V + M+ A
Sbjct: 383 CILTCLGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEA 441

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
            L P   +  +M+        L EAC  F  +  +  + +P   T  +L++ L R  +V+
Sbjct: 442 GLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHK--VCSPDSRTFCSLIDGLGRRGRVD 499

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
            A  ++  ++      NV  +T  I + F  G
Sbjct: 500 DAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCG 531



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 205/432 (47%), Gaps = 3/432 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L K R+      L EE+   +  +     +  ++  + SA    +A  +L+  
Sbjct: 311 YTTLIGVLCKARRLDEAVELFEELDLNR-SVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ 369

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
            + GC P    + C+L  L +   V+EA ++ DEMR+   P+L  +  L+   CK G+L 
Sbjct: 370 KRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELE 429

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A  V   MK+AG  P+I+  N ++    +  K+ +A  +   +  K C P++ ++  LI
Sbjct: 430 AALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLI 489

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             L R  ++++A   + +M  S    +VV YT+LI  F K  + +  ++I   M+ RG  
Sbjct: 490 DGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCS 549

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+ +     M    K  E+E+   L  E++  G VPDV +Y+++I    K G  +E   +
Sbjct: 550 PDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKL 609

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           + EM+   L     ++  ++ GF   G + +A +  +EM  +GL   P   T  ++++ L
Sbjct: 610 FYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGL--QPTVVTYGSVVDGL 667

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +  +++ A  ++    + G +LNV  ++  I      G + EA     ++M   + P  
Sbjct: 668 AKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNS 727

Query: 561 DTFAKLMRGLKK 572
            T+  L+  L K
Sbjct: 728 YTWNCLLDALVK 739



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I    K  K    + L+EEM+ +  +P ++T   +  ++   A    + +A  + +
Sbjct: 625 YNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVT---YGSVVDGLAKIDRLDEAYMLFE 681

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           E    G + +  ++  L+D   K   + EA  + +E M++   P+   +  LL    K  
Sbjct: 682 EAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAE 741

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+     MK+    P+ + Y+ +++G   + K   AF   +EM+++G  PN  +YT
Sbjct: 742 EIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYT 801

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  L +   + EA   F   + SG   D   Y  +I G   + K    Y + +    +
Sbjct: 802 TMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLK 861

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           G   N  T + ++ A  K + LE+   +   +R++ 
Sbjct: 862 GCRVNSKTCVVLLDALHKADCLEQAAIVGAVLREMA 897


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 210/418 (50%), Gaps = 17/418 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QPN V     Y  +I  L K +       + ++M  +  KP     + +  L+  + S  
Sbjct: 235 QPNVV----TYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPD---NDTYNCLIHGYLSIG 287

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
             K+ + +L+EM  +G +PD + +G LL+ LC N   +EA   FD M R+  KP++  + 
Sbjct: 288 KWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYG 347

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L++G+  +G L E   +L  M + G  PD  ++N + + YA+   + +A  +  +M+++
Sbjct: 348 ILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  ++  LI ALC++ ++++A   F +M   G   ++  + +L+ G C   K ++ 
Sbjct: 408 GLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKA 467

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E    M+ +GI P+ + +  I+     K ++ +   L+  M ++G  PDV +Y  +I  
Sbjct: 468 KEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGG 527

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C +G + EA    + M +  L P   ++  ++HG+   G + +A   F+EM+  G+   
Sbjct: 528 HCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI--T 585

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
           P   T   +L+ L   ++   AK+++  ++T G +     W IWI+++  NG  K  C
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQ-----WNIWIYNIILNGLSKNNC 638



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 199/416 (47%), Gaps = 9/416 (2%)

Query: 161 MEEMRKEKPQLITTEVFV---ILMRRFASARMVKKAIEVLDEMPKY---GCEPDEFVFGC 214
           M+ + K  P+L  T   V    L++ F + +  ++A+E+L  M       C P+   +  
Sbjct: 149 MDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAT 208

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           +++       V +A  LF EM +R  +P++  +T+++ G CK   +  A+ V  QM D G
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
            +PD   YN L+ GY  +GK  +   +L+EM   G  P+  +Y  L+  LC   +  EA 
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREAR 328

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F  M R G + +V  Y  LI G+     +   +++L+ M++ G+ P+   +  I  A+
Sbjct: 329 FFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAY 388

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            KK  ++E + +  +M++ G  PDV N+  +I   CKLG + +AV  +N+M    ++P  
Sbjct: 389 AKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNI 448

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
             F  +V+G        +A E++ EM+ +G+   P       +L +L    +V  A+ + 
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI--RPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +   G   +V ++T  I      G + EA      M+   + P   T+  L+ G
Sbjct: 507 DLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHG 562



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 164/371 (44%), Gaps = 38/371 (10%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            +F I+   +A   M+ +A+ + ++M + G  PD   FG L+DALCK   V +A   F++
Sbjct: 379 HIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQ 438

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  E   P++  F SL+YG C   K  +AK    +M + G  PD+V +N +L      G+
Sbjct: 439 MMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ 498

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLI--------------------------------- 320
           +  A  L+  M R G  P+  SYT LI                                 
Sbjct: 499 VMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNT 558

Query: 321 --QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
                CR  ++++A   F EM R+G    VVTY+T++ G   +R+     E+  +MI  G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              N   Y  I+    K   ++E  +L   +       +++ +N++I    K G  ++A+
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAM 678

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           +++  + +  L P   ++ ++    + +G L E  + F  M   G  + P    L AL+ 
Sbjct: 679 HLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG--TTPNSRMLNALVR 736

Query: 499 SLLRAQKVEMA 509
            LL    +  A
Sbjct: 737 RLLHRGDITRA 747



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 161/343 (46%), Gaps = 8/343 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI +L K+ +         +M  E   P +    VF  L+    +    +KA E   
Sbjct: 416 FGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF---VFNSLVYGLCTVDKWEKAKEFYF 472

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   F  +L  LC    V +A +L D M R   +P +  +T+L+ G C  G
Sbjct: 473 EMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVG 532

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA   L  M   G +PD   YN LL GY + G++ DA+ + +EM R G  P   +Y+
Sbjct: 533 RIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYS 592

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  L    +  EA   ++ M  SG + ++  Y  +++G  K+  +D  +++  S+  +
Sbjct: 593 TILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSK 652

Query: 378 GILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
                ++T  +IM+ A  K    E+ + L   +   G VPDV  Y ++     + G L+E
Sbjct: 653 D-FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEE 711

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             ++++ ME +  +P +     +V   L +G +  A  Y  ++
Sbjct: 712 FDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKL 754



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 157/355 (44%), Gaps = 17/355 (4%)

Query: 224 SVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCK---------EGKLVEAKYV-LVQMKDA 272
            + +A KLFD +    +P S+  F  LL    +         E +LV + +  +++    
Sbjct: 29  GLDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTI 88

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
              PD+  Y+ L+  + +MG++   F     + + G   N      L++ LC  +++ EA
Sbjct: 89  KVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREA 148

Query: 333 NRAFVE-MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ---RGILPNQLTYLH 388
               ++ M   GC  DVV+Y TL+ GFC  ++ +   E+L  M     R   PN ++Y  
Sbjct: 149 MDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAT 208

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++     + ++++   L  EM   G  P+V  Y  VI   CK   +  A  V+ +M    
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P  D++  ++HG+L  G   E     +EM   GL   P   T  +LLN L    +   
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGL--KPDCYTYGSLLNYLCNNGRCRE 326

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           A+  +  ++ KG + NV  + I IH   + G + E       M++  + P    F
Sbjct: 327 ARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIF 381



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 170/398 (42%), Gaps = 24/398 (6%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVIN------------RCG 115
           N  S D   IF I+   +++   ++ A+     + + GL+  V+N            R  
Sbjct: 372 NGLSPD-HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVD 430

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLIT 173
           DA  L +   M     PN      V+ +L+  L  + K+        EM  +  +P ++ 
Sbjct: 431 DA-VLKFNQMMNEGVAPNIF----VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV- 484

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
              F  ++    +   V KA  ++D M + G  PD   +  L+   C    + EAAK  D
Sbjct: 485 --FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLD 542

Query: 234 EMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
            M     KP    + +LL+G+C+ G++ +A  V  +M   G  P +V Y+ +L G     
Sbjct: 543 VMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTR 602

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           + ++A EL   M   G   N   Y +++  L +   ++EA + F  +     + ++ T+ 
Sbjct: 603 RFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFN 662

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +I    KS + +    +  ++   G++P+  TY  I     ++  LEE  +L   M K 
Sbjct: 663 IMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKS 722

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
           G  P+    N ++R     G++  A    ++++  + S
Sbjct: 723 GTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFS 760



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 6/219 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    +  +    + +  EM +    P ++T   +  ++    + R   +A E+  
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT---YSTILHGLFTTRRFSEAKELYL 612

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M   G + + +++  +L+ L KN+ V EA KLF  +  + F+  +  F  ++    K G
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSG 672

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A ++   +   G  PD+  Y  +     + G + +  +L   M + G  PN+    
Sbjct: 673 RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLN 732

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
            L++ L     +  A     +++      +  T   LIS
Sbjct: 733 ALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLIS 771



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 16/226 (7%)

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLA-------HEKKEELEECVELMGEMRK-- 411
           S  +D   ++ D ++      + + + H++ A            E E  V L   M +  
Sbjct: 27  SLGLDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIREC 86

Query: 412 -IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
            I   PD+  Y+++I   C++G L+     +  +  +           ++ G      L 
Sbjct: 87  TIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLR 146

Query: 471 EACEYF-KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT---KGCELNVY 526
           EA +   K M   G    P   +   LL      ++ E A ++   +     + C  NV 
Sbjct: 147 EAMDILIKRMPELG--CTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVV 204

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           ++   I+  F+ G V +A +  L+MMD  + P   T+  ++ GL K
Sbjct: 205 SYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCK 250


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 206/420 (49%), Gaps = 12/420 (2%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + H ++ + A+I  L  + +F     ++E M++E  + +T +VF+ + R +        A
Sbjct: 46  FRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCE-VTEDVFLTICRGYGRVHRPLDA 104

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           I V  +M  +  +P +  +  + D L + + VK A   + EMRE+   P++     L+  
Sbjct: 105 IRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKA 164

Query: 253 WCKEGKLVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            CK  + VE+ + L  +M + G +PD   Y  L++G  ++GK++ A ELL EM  KG  P
Sbjct: 165 LCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSP 224

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  SYT LI  LC+   ++EA     EM  +G E +V TY++L+ G CKS    +  E+L
Sbjct: 225 SVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELL 284

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + M++R +LPN +TY  ++    K+ +  E VE++  MR  G  PD   Y  +I   C  
Sbjct: 285 EVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAA 344

Query: 432 GELKEAVNVWNEMEAASLSPGTDS--FVVMVHGFLGQGCL-----IEACEYFKEMVGRGL 484
              +EA N  +EM    +SP   S  F V +H  + QG         A + +  M  RG+
Sbjct: 345 CNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGI 404

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             + + GT   L+    +   +  A  +   ++  GC  +   W + +  L+    V+E 
Sbjct: 405 --SVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRET 462



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 17/286 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+   SY  Y  LI  L K+ K      L++EM ++   P +++   +  L+     + 
Sbjct: 188 QPD---SY-TYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVS---YTSLIHGLCQSN 240

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            + +AIE+L+EM   G EP+ F +  L+D LCK+    +A +L + M R R  P++  ++
Sbjct: 241 NLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYS 300

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G CKEGK  EA  +L +M+  G +PD  +Y  ++SG        +A   + EM   
Sbjct: 301 TLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALG 360

Query: 308 GCDPNANSYT-------VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           G  PN  S+T       +++Q LC       A + ++ M   G   ++ T+  L+  FCK
Sbjct: 361 GISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCK 420

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
              +++   IL+ MI  G +P++  +  +M     ++++ E  EL+
Sbjct: 421 RGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELL 466



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 141/334 (42%), Gaps = 7/334 (2%)

Query: 231 LFDEMRERFKPSLRH----FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           +FD   E +    RH    F ++++      +   A+ +L +MK    E    V+  +  
Sbjct: 34  MFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICR 93

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           GY ++ +  DA  +  +M      P   SY  +   L     ++ A   + EM   G   
Sbjct: 94  GYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPP 153

Query: 347 DVVTYTTLISGFCKSRK-IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            VV+   LI   CK+ + ++  + +   M  RG  P+  TY  ++    K  ++ +  EL
Sbjct: 154 TVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKEL 213

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + EM + G  P V +Y  +I   C+   L EA+ +  EM    + P   ++  ++ G   
Sbjct: 214 LDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCK 273

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G   +A E  + MV R LL  P   T   L+N L +  K   A ++   +  +G + + 
Sbjct: 274 SGHSSQAMELLEVMVRRRLL--PNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDA 331

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +   I  L +  + +EA ++  +M    + P 
Sbjct: 332 GMYGRIISGLCAACNYQEAANFIDEMALGGISPN 365



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 136/305 (44%), Gaps = 3/305 (0%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+     + K    F+   E    G   + N++  +I  L  + +   A      M++  
Sbjct: 21  LIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQED 80

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           CE     + T+  G+ +  +      +   M    + P Q +YL +     ++  ++  +
Sbjct: 81  CEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAI 140

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE-AVNVWNEMEAASLSPGTDSFVVMVHG 462
               EMR+ G  P V + N++I+  CK  E  E A  ++ EM      P + ++  +++G
Sbjct: 141 GFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLING 200

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G + +A E   EM  +GL  +P   +  +L++ L ++  ++ A ++   ++  G E
Sbjct: 201 LCKLGKISQAKELLDEMEEKGL--SPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIE 258

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            NV+ ++  +  L  +GH  +A      M+   ++P   T++ L+ GL K    + A EI
Sbjct: 259 PNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEI 318

Query: 583 TEKVR 587
            +++R
Sbjct: 319 LDRMR 323



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 14/218 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+  L K         L+E M  R+  P ++T   +  L+         ++A+E+LD
Sbjct: 264 YSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVT---YSTLINGLCKEGKHREAVEILD 320

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--------RERFKPSLRHFTSLL 250
            M   G +PD  ++G ++  LC   + +EAA   DEM        R  +   ++    ++
Sbjct: 321 RMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVV 380

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C       A  + + M+  G   +I  ++ L+  + + G +  A  +L+EM   GC 
Sbjct: 381 QGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCI 440

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEAD 347
           P+   + VL+  L   +K+ E     V E+++   EA+
Sbjct: 441 PDEGMWNVLMCGLWDRKKVRETTELLVAELKQKFVEAE 478


>gi|357131182|ref|XP_003567219.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Brachypodium distachyon]
          Length = 518

 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 180/355 (50%), Gaps = 6/355 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+Y        +++  L+K R+F    AL++EMR++   L +    ++L+RR+ +AR V
Sbjct: 127 QPDYAPGRHACHSMLAILAKHRRFDDARALLDEMRRK--SLASPRAVLLLVRRYCAARDV 184

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
            +AI     +P +G EP    F  LL ALC+  +V++A  L     + F    + F  +L
Sbjct: 185 TRAIAAFHALPSFGFEPGVAQFHGLLSALCRYKNVQDAEHLLLSSEKEFPFETKSFNIVL 244

Query: 251 YGWCKEG-KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
            GWC     + EAK     M+  G E D+  Y +++S +++ G +    +L   M+  G 
Sbjct: 245 NGWCNMVCSVREAKRFWTAMEVRGIERDVASYGSMISCFSKAGSLDSVLKLFNGMKEAGI 304

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+   Y  ++ AL +   ++EA      ME  G   D  TY +LI   CK+R++    +
Sbjct: 305 VPDRKVYNAVVYALAKGRCVDEAKALVRSMEERGTPPDTATYNSLIGPLCKARQVQEATQ 364

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D MI RG+L +  T+ H +   +      E  +++ +M+ + C P++  Y ++IR  C
Sbjct: 365 MFDEMIGRGLLASVRTF-HALF--DVATSPSEVFDVLDKMKTLHCEPEIDTYIMLIRKFC 421

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +  +      +W+ M    L+P   +++V++HG    G L EA +Y++EM  +G 
Sbjct: 422 RWRQHDSVEKLWSAMPTNGLNPDRSAYIVLIHGLFLNGKLEEAAKYYEEMKAKGF 476



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 159/363 (43%), Gaps = 9/363 (2%)

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
           P Y   P       +L  L K+    +A  L DEMR +   S R    L+  +C    + 
Sbjct: 128 PDYA--PGRHACHSMLAILAKHRRFDDARALLDEMRRKSLASPRAVLLLVRRYCAARDVT 185

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A      +   GFEP +  ++ LLS   +   + DA  LL     K       S+ +++
Sbjct: 186 RAIAAFHALPSFGFEPGVAQFHGLLSALCRYKNVQDAEHLLLS-SEKEFPFETKSFNIVL 244

Query: 321 QALCRME-KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
              C M   + EA R +  ME  G E DV +Y ++IS F K+  +D   ++ + M + GI
Sbjct: 245 NGWCNMVCSVREAKRFWTAMEVRGIERDVASYGSMISCFSKAGSLDSVLKLFNGMKEAGI 304

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P++  Y  ++ A  K   ++E   L+  M + G  PD + YN +I   CK  +++EA  
Sbjct: 305 VPDRKVYNAVVYALAKGRCVDEAKALVRSMEERGTPPDTATYNSLIGPLCKARQVQEATQ 364

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +++EM    L     +F  +         + +  +  K      L   P+  T   L+  
Sbjct: 365 MFDEMIGRGLLASVRTFHALFDVATSPSEVFDVLDKMKT-----LHCEPEIDTYIMLIRK 419

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             R ++ +  + +WS + T G   +  A+ + IH LF NG ++EA  Y  +M      P+
Sbjct: 420 FCRWRQHDSVEKLWSAMPTNGLNPDRSAYIVLIHGLFLNGKLEEAAKYYEEMKAKGFPPE 479

Query: 560 PDT 562
             T
Sbjct: 480 QKT 482



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 4/203 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           F+ A  +   +++ + M + G  PD  V+  ++ AL K   V EA  L   M ER   P 
Sbjct: 283 FSKAGSLDSVLKLFNGMKEAGIVPDRKVYNAVVYALAKGRCVDEAKALVRSMEERGTPPD 342

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + SL+   CK  ++ EA  +  +M   G    +  ++ L   +      ++ F++L 
Sbjct: 343 TATYNSLIGPLCKARQVQEATQMFDEMIGRGLLASVRTFHAL---FDVATSPSEVFDVLD 399

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M+   C+P  ++Y +LI+  CR  + +   + +  M  +G   D   Y  LI G   + 
Sbjct: 400 KMKTLHCEPEIDTYIMLIRKFCRWRQHDSVEKLWSAMPTNGLNPDRSAYIVLIHGLFLNG 459

Query: 363 KIDRCYEILDSMIQRGILPNQLT 385
           K++   +  + M  +G  P Q T
Sbjct: 460 KLEEAAKYYEEMKAKGFPPEQKT 482



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 44/88 (50%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + +++L+R+F   R      ++   MP  G  PD   +  L+  L  N  ++EAAK ++E
Sbjct: 411 DTYIMLIRKFCRWRQHDSVEKLWSAMPTNGLNPDRSAYIVLIHGLFLNGKLEEAAKYYEE 470

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           M+ +  P  +   S++  W    +L +A
Sbjct: 471 MKAKGFPPEQKTESMIQAWLTGRELAKA 498


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 209/443 (47%), Gaps = 10/443 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +  +  A   L+  M    P       +  ++R       V +A+ +LD+M
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 171

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC+P    +  LL+A+CK++   +A ++ DEMR +   P++  +  ++ G C+EG++
Sbjct: 172 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRV 231

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+  L ++   GF+PD V Y  +L G     +  D  EL  EM  K C PN  ++ +L
Sbjct: 232 DDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 291

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++  CR   +E A +   +M   GC A+      +I+  CK  ++D  ++ L++M   G 
Sbjct: 292 VRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGC 351

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++    + E  E+  EL+ EM +  C P+   +N  I + C+ G +++A  
Sbjct: 352 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 411

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M          ++  +V+GF  QG +  A E F  M  +     P   T   LL  
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK-----PNTITYTTLLTG 466

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L  A++++ A ++ + ++ K C  NV  + + +      G + EA      MM+    P 
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 526

Query: 560 PDTFAKLMRGLKKLYNRQIAAEI 582
             T+  L+ G+    N + A E+
Sbjct: 527 LITYNTLLDGITNDCNSEEALEL 549



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 205/486 (42%), Gaps = 85/486 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ V     Y  L++++ K   FG    +++EMR +   P ++T  V +  M R     
Sbjct: 177 QPSVV----TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR-- 230

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--------FK 240
            V  A E L+ +  YG +PD   +  +L  LC     ++  +LF EM E+        F 
Sbjct: 231 -VDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289

Query: 241 PSLRHF------------------------TSL----LYGWCKEGKLVEAKYVLVQMKDA 272
             +R F                        T+L    +   CK+G++ +A   L  M   
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  PD + Y  +L G  +  +  DA ELLKEM RK C PN  ++   I  LC+   +E+A
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQA 409

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                +M   GCE ++VTY  L++GFC   ++D   E+  SM  +   PN +TY  ++  
Sbjct: 410 TMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTG 466

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
               E L+   EL+ EM +  C P+V  +NV++   C+ G + EA+ +  +M     +P 
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPN 526

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK-- 510
             ++  ++ G        EA E    +V  G+  +P   T  +++  L R  +VE A   
Sbjct: 527 LITYNTLLDGITNDCNSEEALELLHGLVSNGV--SPDIVTYSSIIGVLSREDRVEEAIKM 584

Query: 511 ---------------------------------DVWSCIVTKGCELNVYAWTIWIHSLFS 537
                                            D ++ +V+ GC  N   +   I  L +
Sbjct: 585 FHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLAN 644

Query: 538 NGHVKE 543
              +KE
Sbjct: 645 EDFLKE 650



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 185/382 (48%), Gaps = 8/382 (2%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R E P   +       +RR  +   + +A  ++D     G  PD ++   L+  LC+   
Sbjct: 34  RPEAPSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGR 93

Query: 225 VKEAAKLFDEMRERFKPSLRHF--TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
             +AA++     ER   ++  F   +L+ G+C+ G+L  A+ ++  M  A   PD   Y 
Sbjct: 94  TSDAARVL-RAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYT 149

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            ++ G    G++ +A  LL +M  +GC P+  +YTVL++A+C+     +A     EM   
Sbjct: 150 PIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK 209

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  ++VTY  +I+G C+  ++D   E L+ +   G  P+ ++Y  ++      +  E+ 
Sbjct: 210 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 269

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            EL  EM +  C+P+   +++++R  C+ G ++ A+ V  +M     +  T    ++++ 
Sbjct: 270 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 329

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              QG + +A ++   M   G   +P   +   +L  L RA++ E AK++   +V K C 
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYG--CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 523 LNVYAWTIWIHSLFSNGHVKEA 544
            N   +  +I  L   G +++A
Sbjct: 388 PNEVTFNTFICILCQKGLIEQA 409



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 184/424 (43%), Gaps = 73/424 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y  ++K L   +++  V  L  EM  EK  +     F +L+R F    MV
Sbjct: 247 QPDTVS----YTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMV 301

Query: 191 KKAIEVLDEMP-----------------------------------KYGCEPDEFVFGCL 215
           ++AI+VL++M                                     YGC PD   +  +
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 216 LDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           L  LC+    ++A +L  EM R+   P+   F + +   C++G + +A  ++ QM + G 
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFEL--------------------------------LK 302
           E +IV YN L++G+   G++  A EL                                L 
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLA 481

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM +K C PN  ++ VL+   C+   M+EA     +M   GC  +++TY TL+ G     
Sbjct: 482 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDC 541

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
             +   E+L  ++  G+ P+ +TY  I+    +++ +EE +++   ++ +G  P    YN
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 601

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++   CK      A++ +  M +    P   +++ ++ G   +  L E  +  +E+  R
Sbjct: 602 KILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 661

Query: 483 GLLS 486
           G+L+
Sbjct: 662 GVLN 665



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 153/343 (44%), Gaps = 6/343 (1%)

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  ++ +    G  PD+ +   L+    + G+ +DA  +L+   R G   +  +Y  
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+   CR  +++ A R    M  +    D  TYT +I G C   ++     +LD M+ RG
Sbjct: 119 LVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +TY  ++ A  K     + +E++ EMR  GC P++  YNV+I   C+ G + +A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
              N + +    P T S+  ++ G        +  E F EM+ +  +  P   T   L+ 
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM--PNEVTFDMLVR 293

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R   VE A  V   +   GC  N     I I+++   G V +A  +  +M      P
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEIT-EKVRKMAAERQITFKMY 600
              ++  +++GL +    + A E+  E VRK     ++TF  +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 396



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 5/245 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y AL+       +  +   L   M   KP  IT   +  L+    +A  +  A E+L EM
Sbjct: 428 YNALVNGFCVQGRVDSALELFYSM-PCKPNTIT---YTTLLTGLCNAERLDAAAELLAEM 483

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  C P+   F  L+   C+   + EA +L ++M E    P+L  + +LL G   +   
Sbjct: 484 LQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNS 543

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +L  +   G  PDIV Y++++   ++  ++ +A ++   ++  G  P A  Y  +
Sbjct: 544 EEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKI 603

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+    + A   F  M  +GC  + +TY TLI G      +    ++L  +  RG+
Sbjct: 604 LLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663

Query: 380 LPNQL 384
           L   L
Sbjct: 664 LNKNL 668


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 215/436 (49%), Gaps = 9/436 (2%)

Query: 141 YRALIKSLSKMRKF-GAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +  L+ ++ KMR +  AV +L ++M      P   T     +L+  F   + V     VL
Sbjct: 124 FNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH---MLINCFFQLQRVDLGFSVL 180

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            ++ K G +     F  L++ LCK     +A +LFD+M  R ++P +  +T+++ G CK 
Sbjct: 181 AKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKI 240

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+ V A  +  +M +AG +PD+V Y+ ++    +  ++ +A ++   M+ KG  PN  +Y
Sbjct: 241 GETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTY 300

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LIQ LC   +  EA+    EM       ++VT++ LI+ FCK   +     +L +M +
Sbjct: 301 NSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTE 360

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ PN +TY  +M  +  + E+ E  +L   M   GC PDV +YN++I   CK   + E
Sbjct: 361 MGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGE 420

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++NEM    L+P   S+  ++ G    G L EA + FK M+  G L  P   T   L
Sbjct: 421 AKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNL--PDLCTYSIL 478

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L+   +   +  A  ++  + +   + N+  + I I ++  + ++KEA     ++    +
Sbjct: 479 LDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGL 538

Query: 557 MPQPDTFAKLMRGLKK 572
            P    +  ++ GL K
Sbjct: 539 QPNVQIYTTIINGLCK 554



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 185/352 (52%), Gaps = 10/352 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ VH+Y     +I  L K+ +  A   L  +M +   +P ++T   +  ++      R
Sbjct: 224 QPD-VHTY---TTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVT---YSTIIDSLCKDR 276

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247
            V +A+++   M   G  P+ F +  L+  LC  S  +EA+ + +EM      P++  F+
Sbjct: 277 RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 336

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+  +CKEG + EA+ VL  M + G EP++V Y++L++GY+   ++ +A +L   M  K
Sbjct: 337 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITK 396

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC P+  SY +LI   C+ +++ EA + F EM   G   D+V+Y TLI G C+  ++   
Sbjct: 397 GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 456

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           +++  +M+  G LP+  TY  ++    K+  L +   L   M+     P++  YN++I  
Sbjct: 457 HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 516

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            CK   LKEA  +++E+    L P    +  +++G   +G L EA E F+ M
Sbjct: 517 MCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNM 568



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 140/265 (52%), Gaps = 5/265 (1%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
            V   M EM  E P ++T   +  LM  ++    V +A ++ D M   GC+PD F +  L
Sbjct: 353 GVLKTMTEMGVE-PNVVT---YSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNIL 408

Query: 216 LDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  CK   + EA +LF+EM  +   P +  + +L+ G C+ G+L EA  +   M   G 
Sbjct: 409 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 468

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD+  Y+ LL G+ + G +  AF L + M+     PN   Y +LI A+C+   ++EA +
Sbjct: 469 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 528

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F E+   G + +V  YTT+I+G CK   +D   E   +M + G  PN+ +Y  I+    
Sbjct: 529 LFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFL 588

Query: 395 KKEELEECVELMGEMRKIGCVPDVS 419
           + ++    V+L+GEMR+ G V DV+
Sbjct: 589 QHKDESRAVQLIGEMREKGFVADVA 613



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 6/353 (1%)

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV-QMKDAGFEPDIVVY 281
           ++ +A   F+ M  R  +P +  F  LL    K     +A   L  QM+ AG  PD    
Sbjct: 101 NIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTL 160

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           + L++ + Q+ ++   F +L ++ + G      ++  LI  LC++ K  +A   F +M  
Sbjct: 161 HMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVA 220

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G + DV TYTT+I+G CK  +      +   M + G  P+ +TY  I+ +  K   + E
Sbjct: 221 RGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 280

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            +++   M+  G  P++  YN +I+  C     +EA  + NEM + ++ P   +F ++++
Sbjct: 281 ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 340

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVWSCIVTKG 520
            F  +G + EA    K M   G+   P   T  +L+N   L+A+ VE A+ ++  ++TKG
Sbjct: 341 IFCKEGNVFEARGVLKTMTEMGV--EPNVVTYSSLMNGYSLQAEVVE-ARKLFDVMITKG 397

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           C+ +V+++ I I+       + EA     +M+   + P   ++  L+ GL +L
Sbjct: 398 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQL 450



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y +L+   S   +      L + M  +  KP + +   + IL+  +  A+
Sbjct: 364 EPNVV----TYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFS---YNILINGYCKAK 416

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFT 247
            + +A ++ +EM   G  PD   +  L+D LC+   ++EA  LF  M      P L  ++
Sbjct: 417 RIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYS 476

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            LL G+CK+G L +A  +   M+    +P++V+YN L+    +   + +A +L  E+  +
Sbjct: 477 ILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQ 536

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN   YT +I  LC+   ++EA  AF  ME  GC  +  +Y  +I GF + +   R 
Sbjct: 537 GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRA 596

Query: 368 YEILDSMIQRGILPNQLT 385
            +++  M ++G + +  T
Sbjct: 597 VQLIGEMREKGFVADVAT 614



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 129/305 (42%), Gaps = 38/305 (12%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEADVVTY 351
            + DA      M  +   P    +  L+ A+ +M    +A  +   +ME +G   D  T 
Sbjct: 101 NIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTL 160

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             LI+ F + +++D  + +L  +I+ G+   QLT                          
Sbjct: 161 HMLINCFFQLQRVDLGFSVLAKIIKLGL---QLT-------------------------- 191

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
                 +  +N +I   CK+G+  +AV ++++M A    P   ++  +++G    G  + 
Sbjct: 192 ------IVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVA 245

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   F++M   G    P   T   +++SL + ++V  A D++S +  KG   N++ +   
Sbjct: 246 AAGLFRKMGEAG--CQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSL 303

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L +    +EA +   +MM  ++MP   TF+ L+    K  N   A  + + + +M  
Sbjct: 304 IQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGV 363

Query: 592 ERQIT 596
           E  + 
Sbjct: 364 EPNVV 368


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 226/474 (47%), Gaps = 9/474 (1%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            ++EM  +         F  L+     A  VK AIE++D M + G +PD + +  ++  L
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           CK   VKEA ++ D+M  R   P+   + +L+   CKE ++ EA  +   +   G  PD+
Sbjct: 341 CKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             +N+L+ G         A EL +EMR KGC+P+  +Y +LI +LC   K++EA     +
Sbjct: 401 CTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ 460

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME SGC   V+TY TLI GFCK+ K     EI D M   G+  N +TY  ++    K   
Sbjct: 461 MELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRR 520

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +E+  +LM +M   G  PD   YN ++   C+ G++K+A ++   M +    P   ++  
Sbjct: 521 VEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT 580

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G    G +  A +  + +  +G+   P       ++  L R +K   A +++  ++ 
Sbjct: 581 LISGLCKAGRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTEAINLFREMLE 638

Query: 519 KG-CELNVYAWTIWIHSLFS-NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
           +     +  ++ I    L +  G ++EA  + +++++   +P+  +   L  GL  L   
Sbjct: 639 QNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSME 698

Query: 577 QIAAEITEKVRKMA--AERQITF--KMYKRRGERDLKEKAKKQVDGRKRRARQR 626
           +   ++   V + A  +E +++    + K R  +D        +D R+ R   R
Sbjct: 699 ETLVKLVNMVMQKARFSEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTYR 752



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 206/452 (45%), Gaps = 49/452 (10%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE------ 209
           +VW +       KP + T   F +L++    A  ++ AI +L++MP YG  PDE      
Sbjct: 181 SVWGI-------KPDVST---FNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230

Query: 210 --------------------FVFGC---------LLDALCKNSSVKEAAKLFDEM--RER 238
                                 FGC         ++   CK   V++A     EM  ++ 
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P    F +L+ G CK G +  A  ++  M   G++PD+  YN+++SG  ++G++ +A 
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+L +M  + C PN  +Y  LI  LC+  ++EEA      +   G   DV T+ +LI G 
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C +R      E+ + M  +G  P++ TY  ++ +   K +L+E + ++ +M   GC   V
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   CK  + +EA  +++EME   +S  + ++  ++ G      + +A +   +
Sbjct: 471 ITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  G    P   T  +LL    R   ++ A D+   + + GCE ++  +   I  L   
Sbjct: 531 MIMEG--QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           G V+ A      +    +   P  +  +++GL
Sbjct: 589 GRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/538 (23%), Positives = 237/538 (44%), Gaps = 76/538 (14%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           R +  ASK+PN+     +Y  ++  L +   F  +  ++E+M+  + ++  T  F+IL+ 
Sbjct: 68  RLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM-GTSTFLILIE 126

Query: 183 RFASARMVKKAIEVLD------------------------------------EMPKYGCE 206
            +A   +  + + V+D                                    +M  +G +
Sbjct: 127 SYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK 186

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS----------------- 248
           PD   F  L+ ALC+   ++ A  + ++M      P  + FT+                 
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246

Query: 249 ------------------LLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYA 289
                             +++G+CKEG++ +A   + +M +  GF PD   +N L++G  
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G +  A E++  M ++G DP+  +Y  +I  LC++ +++EA     +M    C  + V
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY TLIS  CK  +++   E+   +  +GILP+  T+  ++            +EL  EM
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           R  GC PD   YN++I   C  G+L EA+N+  +ME +  +    ++  ++ GF      
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA E F EM   G+  +    T   L++ L ++++VE A  +   ++ +G + + Y + 
Sbjct: 487 REAEEIFDEMEVHGV--SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             +      G +K+A      M      P   T+  L+ GL K    ++A+++   ++
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 174/390 (44%), Gaps = 7/390 (1%)

Query: 215 LLDALCKNSSVKEAAKLFD--EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           LLD+L        A +LF+    +  F P    +  +L    + G   + K +L  MK +
Sbjct: 53  LLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSS 112

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEKMEE 331
             E     +  L+  YAQ     +   ++  M  + G  P+ + Y  ++  L     ++ 
Sbjct: 113 RCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKL 172

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
              +  +M   G + DV T+  LI   C++ ++     +L+ M   G++P++ T+  +M 
Sbjct: 173 VEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQ 232

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-SLS 450
            + ++ +L+  + +  +M + GC     + NV++   CK G +++A+N   EM       
Sbjct: 233 GYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF 292

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   +F  +V+G    G +  A E    M+  G    P   T  ++++ L +  +V+ A 
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY--DPDVYTYNSVISGLCKLGEVKEAV 350

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +V   ++T+ C  N   +   I +L     V+EA      +    ++P   TF  L++GL
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 571 KKLYNRQIAAEITEKVRKMAAE-RQITFKM 599
               N ++A E+ E++R    E  + T+ M
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 205/441 (46%), Gaps = 43/441 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +  +      L  +M ++   P   T   + +L+   + +    +A+ + +
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCP---TVRTYTVLIYALSGSGRKVEALNLFN 323

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + GCEP+   +  L+D LCK + + EA K+  EM E+   PS+  + +L+ G+CKEG
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383

Query: 258 -----------------------------------KLVEAKYVLVQMKDAGFEPDIVVYN 282
                                              K+ +A  +L +M +    P ++ YN
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYN 443

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L+ G  ++  +  A+ LL  M   G  P+  +Y+V I  LC+  ++EEA   F  ++  
Sbjct: 444 SLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAK 503

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G +A+ V YT LI G+CK  KID  Y +L+ M+    LPN  TY  ++    K+++++E 
Sbjct: 504 GVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEA 563

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             L+ +M  +G  P V  Y ++I    K G    A+ V+N M +    P   ++   +H 
Sbjct: 564 SSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHA 623

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           +  QG L E  +   +M   G+L  P   T   L++   R      A D   C+V  GC+
Sbjct: 624 YFSQGMLEEVDDVIAKMNEEGIL--PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCK 681

Query: 523 LNVYAWTIWIHSLFSNGHVKE 543
            ++Y  +I I +L     +KE
Sbjct: 682 PSLYIVSILIKNLSHENRMKE 702



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 207/434 (47%), Gaps = 16/434 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV------FVILMRRFASARMVKKAI 194
           Y  ++ SLSK       + L++EM+    +L+  ++      F  ++  +     V +A 
Sbjct: 162 YNTILMSLSK-------FLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAE 214

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
               ++ + G  PD F +  L+   C+N  V  A ++F  M ++  + +   +T+L++G 
Sbjct: 215 LYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGL 274

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+ G++ EA  +   M +    P +  Y  L+   +  G+  +A  L  EM+ KGC+PN 
Sbjct: 275 CEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++YTVLI  LC+  KM+EA +   EM   G    VVTY  LI G+CK   ID  +EILD 
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL 394

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M      PN  TY  ++    KK ++ + + L+ +M +    P +  YN +I   CK+ +
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND 454

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L+ A  + + M    L P   ++ V +     +G + EA   F  +  +G+ +     T 
Sbjct: 455 LESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYT- 513

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            AL++   +  K+++A  +   ++   C  N Y + + I  L     +KEA S    M+ 
Sbjct: 514 -ALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT 572

Query: 554 ADVMPQPDTFAKLM 567
             V P   T+  L+
Sbjct: 573 MGVKPTVVTYTILI 586



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 198/395 (50%), Gaps = 3/395 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+     A  + +A+++  +M +  C P    +  L+ AL  +    EA  LF+EM+E+ 
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T L+ G CKE K+ EA+ +L +M + G  P +V YN L+ GY + G + DAF
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+L  M    C PN  +Y  LI  LC+  K+ +A     +M        ++TY +LI G 
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   ++  Y +L  M + G++P+Q TY   +    K+  +EE   L   ++  G   + 
Sbjct: 450 CKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y  +I   CK+G++  A ++   M   +  P + ++ V++ G   +  + EA     +
Sbjct: 510 VIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  G+   P   T   L+  +L+    + A  V++ +V+ G + +V  +T ++H+ FS 
Sbjct: 570 MLTMGV--KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQ 627

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           G ++E       M +  ++P   T+  L+ G  +L
Sbjct: 628 GMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARL 662



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 224/496 (45%), Gaps = 25/496 (5%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE----KPQLITTEVFVI 179
           ++ W + +P + H+   Y +++  L + R  G    +   M K     +  L   EVF  
Sbjct: 87  FFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRK 146

Query: 180 L-----------MRRFASARMVKKAIEVLDEMPKYGCE-------PDEFVFGCLLDALCK 221
           +           +R + +  M      ++DEM     E       P+ + F  +++  CK
Sbjct: 147 MNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCK 206

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
             +V EA     ++ +    P    +TSL+ G C+   +  A  V + M   G + + V 
Sbjct: 207 IGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVS 266

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y NL+ G  + G++ +A +L  +M    C P   +YTVLI AL    +  EA   F EM+
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMK 326

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             GCE +V TYT LI G CK  K+D   ++L  M ++G++P+ +TY  ++  + K+  ++
Sbjct: 327 EKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMID 386

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +  E++  M    C P+   YN +I   CK  ++ +A+ + N+M    LSP   ++  ++
Sbjct: 387 DAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           HG      L  A      M   GL+  P   T    +++L +  +VE A  ++  +  KG
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLV--PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
            + N   +T  I      G +  A S    M++   +P   T+  L+ GL K    + A+
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 581 EITEKVRKMAAERQIT 596
            +  K+  M  +  + 
Sbjct: 565 SLVAKMLTMGVKPTVV 580



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 191/434 (44%), Gaps = 52/434 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y ALI    K+ K    ++L+E M  +   L  +  + +L+      + +K+A  ++ +
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDA-CLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G +P    +  L+  + K+ +   A K+F+ M    ++P +  +T+ L+ +  +G 
Sbjct: 570 MLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGM 629

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L E   V+ +M + G  PD+V Y  L+ GYA++G    AF+ LK M   GC P+    ++
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTY--TTLISGFCKSRKIDRCYEILDSMIQ 376
           LI+ L    +M+E         RS    D V+   +  I+   K+ + +   ++ + M++
Sbjct: 690 LIKNLSHENRMKET--------RSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVE 741

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G   +   Y  ++    ++E LEE   L+  M++ G  P    YN ++   CKLG   E
Sbjct: 742 HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAE 801

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           AV + + M    L P  +S+ ++V G   +G                             
Sbjct: 802 AVRLVDAMVENGLLPLLESYKLLVCGLYIEG----------------------------- 832

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA-D 555
                     E AK V+  +++ G   +  AW + I  L     V E CS  +D+M+  D
Sbjct: 833 --------SNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDE-CSELIDIMEEKD 883

Query: 556 VMPQPDTF-AKLMR 568
              Q D   A LMR
Sbjct: 884 ATAQADIACAALMR 897



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 43/306 (14%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW 158
           G +L+ G  +  +       +LGY        QP+ V +Y  +     S   + +   V 
Sbjct: 587 GEMLKDGAFDHALKVFNHMVSLGY--------QPD-VCTYTAFLHAYFSQGMLEEVDDVI 637

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           A M E     P L+T   + +L+  +A   +  +A + L  M   GC+P  ++   L+  
Sbjct: 638 AKMNE-EGILPDLVT---YTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKN 693

Query: 219 LCKNSSVKE-----------------------------AAKLFDEMRER-FKPSLRHFTS 248
           L   + +KE                             A KLF++M E      +  + +
Sbjct: 694 LSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGA 753

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C++ +L EA+ ++  MK+ G  P   +YN+LL    ++G   +A  L+  M   G
Sbjct: 754 LIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENG 813

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P   SY +L+  L      E+A   F  +   G   D V +  LI G  K   +D C 
Sbjct: 814 LLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECS 873

Query: 369 EILDSM 374
           E++D M
Sbjct: 874 ELIDIM 879


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 199/419 (47%), Gaps = 8/419 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V  + R+L  F      L  AL      L P     V+ RC +      R++++A+  P 
Sbjct: 50  VGALCRVLSDFRGPRHDLRAALDGFAPRLTPAAAADVLRRCRNLPVPSLRFFLFAAALPG 109

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + H  +    L  SL+  R F  + +L+ ++ +     ++ ++F +L R +A A +   A
Sbjct: 110 FTHLPESLLILAGSLAGARLFPLLRSLLSDLPRPA---LSRDLFPLLFRAYARAGLPDDA 166

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I     M ++G  P       LL  L  N  V+ A   F E   +F  S + +T L+ GW
Sbjct: 167 IRAFSSMERFGFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPIQFDVSAKTYTILISGW 226

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR-KGCDPN 312
               K  +A+ +  +M + G +PD+  YN L+    + G +  A E LK+M+R +G  P+
Sbjct: 227 AVVAKPEKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRSRGLAPD 286

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +Y   +++ C  +    A R    M       +V TY  +I   C+  ++D  Y IL+
Sbjct: 287 AATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEVDEAYNILN 346

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M   G  P+  +Y  ++  H K +E+ + + L+  M +  C+P+  +YN+++++   +G
Sbjct: 347 EMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMILKMLIAIG 406

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGF-LGQGCLIEACEYFKEMVGRGLLSAPQY 490
            +  A+ VW+ ME     PG  ++ VM+HG    +G   EAC YF  MV  G+   P Y
Sbjct: 407 RVDRAIEVWDGMEKRGFHPGAATYAVMIHGLSCKKGRAEEACSYFLRMVDDGI---PPY 462


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 177/342 (51%), Gaps = 3/342 (0%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           ++  EM + GC+PD  +    +D + K   V++   +F++++   F P +R ++ L++G 
Sbjct: 10  KIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGL 69

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            K G+  E   +   MK  GF  D   YN ++ G+ + GK+  A+E L+EM+ K   P  
Sbjct: 70  TKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTV 129

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  +I  L ++++++EA   F E +  G E +V+ Y++LI GF K  +ID  Y IL+ 
Sbjct: 130 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 189

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+++G+ PN  T+  +M A  K EE+ E +     M+++ C P+   Y+++I   C++ +
Sbjct: 190 MMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQK 249

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             +A   W EM+   L P   ++  M+ G    G + +AC  F+     G    P   + 
Sbjct: 250 YNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANG--GIPDAASF 307

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            AL+  +  A +   A  V+     +GC +NV A    + +L
Sbjct: 308 NALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDAL 349



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 140/268 (52%), Gaps = 1/268 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+     A   ++   +   M + G   D   +  ++D  CK+  V +A +  +EM+
Sbjct: 62  YSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMK 121

Query: 237 -ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P++  + S++ G  K  +L EA  +  + K  G E +++VY++L+ G+ ++G++ 
Sbjct: 122 VKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRID 181

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A+ +L+EM +KG  PN  ++  L+ AL + E++ EA   F  M+   C  +  TY+ LI
Sbjct: 182 EAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILI 241

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G C+ +K ++ +     M ++G++PN +TY  ++    K   + +   L    +  G +
Sbjct: 242 NGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGI 301

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNE 443
           PD +++N +I          EA +V+ E
Sbjct: 302 PDAASFNALIEGMSHANRAIEAYHVFEE 329



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 159/328 (48%), Gaps = 3/328 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V+K   + +++  YG  PD   +  L+  L K    +E + +F  M++R F    R + +
Sbjct: 40  VEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNA 99

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G+CK GK+ +A   L +MK     P +  Y +++ G A++ ++ +A+ L +E + KG
Sbjct: 100 VVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKG 159

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            + N   Y+ LI    ++ +++EA     EM + G   +V T+ +L+    K+ +I+   
Sbjct: 160 IELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEAL 219

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
               SM +    PN  TY  ++    + ++  +      EM+K G VP+V  Y  +I   
Sbjct: 220 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGL 279

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K+G + +A +++   +A    P   SF  ++ G       IEA   F+E   RG     
Sbjct: 280 AKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRG--CRI 337

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCI 516
                 +LL++L +A+ +E A  V + +
Sbjct: 338 NVKACISLLDALNKAECIEQAAVVGAVL 365



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 3/324 (0%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+  +   +  +M   G +PD+ + N  +    + G +     + ++++  G  P+  SY
Sbjct: 3   GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 62

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           ++LI  L +  +  E +  F  M++ G   D   Y  ++ GFCKS K+D+ YE L+ M  
Sbjct: 63  SILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKV 122

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           + + P   TY  I+    K + L+E   L  E +  G   +V  Y+ +I    K+G + E
Sbjct: 123 KHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 182

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +  EM    L+P   ++  ++   +    + EA   F+ M  + +  +P   T   L
Sbjct: 183 AYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSM--KEMKCSPNTYTYSIL 240

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +N L R QK   A   W  +  +G   NV  +T  I  L   G++ +ACS          
Sbjct: 241 INGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGG 300

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAA 580
           +P   +F  L+ G+    NR I A
Sbjct: 301 IPDAASFNALIEGMSHA-NRAIEA 323



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 27/309 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L+K  +     ++   M K++   +    +  ++  F  +  V KA E L+EM
Sbjct: 62  YSILIHGLTKAGQARETSSIFHAM-KQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEM 120

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
                 P    +G ++D L K   + EA  LF+E + +  + ++  ++SL+ G+ K G++
Sbjct: 121 KVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRI 180

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +L +M   G  P++  +N+L+    +  ++ +A    + M+   C PN  +Y++L
Sbjct: 181 DEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSIL 240

Query: 320 IQALCRMEKMEEANRAFV---EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           I  LCR++K    N+AFV   EM++ G   +VVTYTT+ISG  K   I     + +    
Sbjct: 241 INGLCRVQKY---NKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKA 297

Query: 377 RGILPNQLTY-------LHIMLAHEKKEELEE------------CVELMGEMRKIGCVPD 417
            G +P+  ++        H   A E     EE            C+ L+  + K  C+  
Sbjct: 298 NGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKAECIEQ 357

Query: 418 VSNYNVVIR 426
            +    V+R
Sbjct: 358 AAVVGAVLR 366



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 138/296 (46%), Gaps = 2/296 (0%)

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G+  D  ++ KEM R+GC P+       +  + +   +E+    F +++  G   DV +Y
Sbjct: 3   GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 62

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           + LI G  K+ +      I  +M QRG   +   Y  ++    K  ++++  E + EM+ 
Sbjct: 63  SILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKV 122

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
               P V+ Y  +I    K+  L EA  ++ E ++  +      +  ++ GF   G + E
Sbjct: 123 KHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 182

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A    +EM+ +GL  AP   T  +L+++L++A+++  A   +  +    C  N Y ++I 
Sbjct: 183 AYLILEEMMKKGL--APNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSIL 240

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           I+ L       +A  +  +M    ++P   T+  ++ GL K+ N   A  + E+ +
Sbjct: 241 INGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFK 296



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 4/287 (1%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR-KEKPQLITTEVFVILMRRFAS 186
           A KQ  +      Y A++    K  K    +  +EEM+ K  P  + T  +  ++   A 
Sbjct: 84  AMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVAT--YGSIIDGLAK 141

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
              + +A  + +E    G E +  V+  L+D   K   + EA  + +EM ++   P++  
Sbjct: 142 IDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYT 201

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + SL+    K  ++ EA      MK+    P+   Y+ L++G  ++ K   AF   +EM+
Sbjct: 202 WNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQ 261

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           ++G  PN  +YT +I  L ++  + +A   F   + +G   D  ++  LI G   + +  
Sbjct: 262 KQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAI 321

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
             Y + +    RG   N    + ++ A  K E +E+   +   +R+I
Sbjct: 322 EAYHVFEETRLRGCRINVKACISLLDALNKAECIEQAAVVGAVLREI 368


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 210/418 (50%), Gaps = 17/418 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QPN V     Y  +I  L K +       + ++M  +  KP     + +  L+  + S  
Sbjct: 235 QPNVV----TYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPD---NDTYNCLIHGYLSIG 287

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
             K+ + +L+EM  +G +PD + +G LL+ LC N   +EA  LFD M R+  KP++  + 
Sbjct: 288 KWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYG 347

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L++G+  +G L E   +L  M + G  PD  ++N + + YA+   + +A  +  +M+++
Sbjct: 348 ILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y  LI ALC++ ++++A   F +M   G   ++  + +L+ G C   K ++ 
Sbjct: 408 GLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKA 467

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E    M+ +GI P+ + +  I+     K ++ +   L+  M ++G  P V +Y  +I  
Sbjct: 468 KEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGG 527

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C +G + EA    + M +  L P   ++  ++HG+   G + +A   F+EM+  G+   
Sbjct: 528 HCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI--T 585

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
           P   T   +L+ L   ++   AK+++  ++T G +     W IWI+++  NG  K  C
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQ-----WNIWIYNIILNGLSKNNC 638



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 198/416 (47%), Gaps = 9/416 (2%)

Query: 161 MEEMRKEKPQLITTEVFV---ILMRRFASARMVKKAIEVLDEMPKY---GCEPDEFVFGC 214
           M+ + K  P+L  T   V    L++ F + +  ++A+E+L  M       C P+   +  
Sbjct: 149 MDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAI 208

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           +++       V +A  LF EM +R  +P++  +T+++ G CK   +  A+ V  QM D G
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
            +PD   YN L+ GY  +GK  +   +L+EM   G  P+  +Y  L+  LC   +  EA 
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREAR 328

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F  M R G + +V  Y  LI G+     +   +++L+ M++ G+ P+   +  I  A+
Sbjct: 329 FLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAY 388

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            KK  ++E + +  +M++ G  PDV NY  +I   CKLG + +AV  +N+M    ++P  
Sbjct: 389 AKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNI 448

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
             F  +V+G        +A E++ EM+ +G+   P       +L +L    +V  A+ + 
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI--RPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +   G    V ++T  I      G + EA      M+   + P   T+  L+ G
Sbjct: 507 DLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHG 562



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 159/340 (46%), Gaps = 8/340 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI +L K+ +         +M  E   P +    VF  L+    +    +KA E   
Sbjct: 416 YGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF---VFNSLVYGLCTVDKWEKAKEFYF 472

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   F  +L  LC    V +A +L D M R   +P +  +T+L+ G C  G
Sbjct: 473 EMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVG 532

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA   L  M   G +PD   YN LL GY + G++ DA+ + +EM R G  P   +Y+
Sbjct: 533 RIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYS 592

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  L    +  EA   ++ M  SG + ++  Y  +++G  K+  +D  +++  S+  +
Sbjct: 593 TILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSK 652

Query: 378 GILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
                ++T  +IM+ A  K    E+ + L   +   G VPDV  Y ++     + G L+E
Sbjct: 653 D-FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEE 711

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
             ++++ ME +  +P +     +V   L +G +  A  Y 
Sbjct: 712 FDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYL 751



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 163/371 (43%), Gaps = 38/371 (10%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            +F I+   +A   M+ +A+ + ++M + G  PD   +G L+DALCK   V +A   F++
Sbjct: 379 HIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQ 438

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  E   P++  F SL+YG C   K  +AK    +M + G  PD+V +N +L      G+
Sbjct: 439 MMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ 498

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLI--------------------------------- 320
           +  A  L+  M R G  P   SYT LI                                 
Sbjct: 499 VMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNT 558

Query: 321 --QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
                CR  ++++A   F EM R+G    VVTY+T++ G   +R+     E+  +MI  G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              N   Y  I+    K   ++E  +L   +       +++ +N++I    K G  ++A+
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAM 678

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           +++  + +  L P   ++ ++    + +G L E  + F  M   G  + P    L AL+ 
Sbjct: 679 HLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG--TTPNSRMLNALVR 736

Query: 499 SLLRAQKVEMA 509
            LL    +  A
Sbjct: 737 RLLHRGDITRA 747



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 157/355 (44%), Gaps = 17/355 (4%)

Query: 224 SVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCK---------EGKLVEAKYV-LVQMKDA 272
            + +A KLFD +    +P S+  F  LL    +         E +LV + +  +++    
Sbjct: 29  GLDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTI 88

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
              PD   Y+ L+  + +MG++   F     + + G   N      L++ LC  +++ EA
Sbjct: 89  KVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEA 148

Query: 333 NRAFVE-MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ---RGILPNQLTYLH 388
               V+ M   GC  DVV+Y TL+ GFC  ++ +   E+L  M     R   PN ++Y  
Sbjct: 149 MDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAI 208

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++     + ++++   L  EM   G  P+V  Y  VI   CK   +  A  V+ +M    
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P  D++  ++HG+L  G   E     +EM   GL   P   T  +LLN L    +   
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGL--KPDCYTYGSLLNYLCNNGRCRE 326

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           A+ ++  ++ KG + NV  + I IH   + G + E       M++  + P    F
Sbjct: 327 ARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIF 381



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 6/219 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    +  +    + +  EM +    P ++T   +  ++    + R   +A E+  
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT---YSTILHGLFTTRRFSEAKELYL 612

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M   G + + +++  +L+ L KN+ V EA KLF  +  + F+  +  F  ++    K G
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSG 672

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A ++   +   G  PD+  Y  +     + G + +  +L   M + G  PN+    
Sbjct: 673 RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLN 732

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
            L++ L     +  A     +++      +  T   LIS
Sbjct: 733 ALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLIS 771



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 20/228 (8%)

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLA-------HEKKEELEECVELMGEMRK-- 411
           S  +D   ++ D ++      + + + H++ A            E E  V L   M +  
Sbjct: 27  SLGLDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIREC 86

Query: 412 -IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
            I   PD   Y+++I   C++G L+     +  +    L  G     ++++  L   C  
Sbjct: 87  TIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLI----LKSGWRVNNIVINQLLKGLCDA 142

Query: 471 E-ACEYFKEMVGR--GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT---KGCELN 524
           +  CE    +V R   L   P   +   LL      ++ E A ++   +     + C  N
Sbjct: 143 KRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPN 202

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           V ++ I I+  F+ G V +A +  L+MMD  + P   T+  ++ GL K
Sbjct: 203 VVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCK 250


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 191/392 (48%), Gaps = 3/392 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F +L+   +    +++A  ++ EM K G     + +  L+   CK   + EA  L++EM 
Sbjct: 275 FNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMV 334

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R   P++    +++YG+CKEGK+ +A+  L  M      PDI+ YN L+ G+ ++G + 
Sbjct: 335 TRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIG 394

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +AF LL E+R +    N  +Y  LI  LCR+  +E A +   +M   G   DVVTYT L+
Sbjct: 395 EAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLV 454

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G CK   +    E  D M+  G+ P+Q  Y   ++   K  +  +  +L  EM   G  
Sbjct: 455 NGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFP 514

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  YNV +   CKLG L+EA  +  +M      P   ++   +H  +  G L E  E 
Sbjct: 515 PDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREI 574

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F +M+ RG    P   T   L+++     +++ A   +  +  KG   NV  + + I+  
Sbjct: 575 FYDMLSRG--QTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGF 632

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
                + +AC + ++M +  + P   T+  L+
Sbjct: 633 CKVRKMDQACKFFIEMQEKGIFPNKYTYTILI 664



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 198/402 (49%), Gaps = 3/402 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T   +  ++  F     V++A++++ +M + GC P E  F  L++ L K   +++A  L 
Sbjct: 236 TVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLI 295

Query: 233 DEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            EM +   + S   +  L+ G+CK+G LVEA  +  +M   G  P +  +N ++ G+ + 
Sbjct: 296 QEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKE 355

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           GKM+DA + L +M +K   P+  SY  LI   CR+  + EA     E+       ++VTY
Sbjct: 356 GKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTY 415

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            TLI G C+   ++   ++ + MI RGI P+ +TY  ++    K   +    E   EM  
Sbjct: 416 NTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLH 475

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
           +G  PD   Y   I    KLG+  +A  +  EM      P   ++ V V+G    G L E
Sbjct: 476 VGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEE 535

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A E  ++M+  G    P + T  + +++ +    +   ++++  ++++G    V  +T+ 
Sbjct: 536 AGELLQKMIRDG--HVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVL 593

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           IH+   NG +  A +Y L+M +  V+P   T+  L+ G  K+
Sbjct: 594 IHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKV 635



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 226/502 (45%), Gaps = 30/502 (5%)

Query: 96  QHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFG 155
           + + V+  P L  RV+    +   +  R++     QP +  S   + A+++ L       
Sbjct: 97  KFNSVITDPQLLIRVLYSIREKPTIALRFFKCVLTQPGFKTSEYAFCAILQILVDNCLMK 156

Query: 156 AVWALME-----EMRKEKPQLITTE-------VFVILMR-RFA--------------SAR 188
           + + +ME     EM      LI          VF  +MR RF                  
Sbjct: 157 SAYWVMERIISFEMYGIVDVLIGGYLNYQCLLVFEKMMRNRFLPDVKNCNRILKILRDKN 216

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           ++ KA+EV   M +YG  P    +  +L + CK   V+ A  L  +M+ER   PS   F 
Sbjct: 217 LLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFN 276

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+ G  K+G+L +AK ++ +M  AG       YN L+ GY + G + +A  L +EM  +
Sbjct: 277 VLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTR 336

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P   S+  ++   C+  KM +A +   +M +     D+++Y TLI GFC+   I   
Sbjct: 337 GVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEA 396

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + +LD +  R +  N +TY  ++    +  +LE  ++L  +M   G  PDV  Y V++  
Sbjct: 397 FILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNG 456

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
           ACKLG +  A   ++EM    L+P   ++   + G L  G   +A +  +EM+ +G    
Sbjct: 457 ACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGF--P 514

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T    +N L +   +E A ++   ++  G   +   +T ++H+   NGH++E    
Sbjct: 515 PDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREI 574

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
             DM+     P   T+  L+  
Sbjct: 575 FYDMLSRGQTPTVVTYTVLIHA 596



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 170/350 (48%), Gaps = 6/350 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P +I+   +  L+  F     + +A  +LDE+       +   +  L+D LC+   ++ A
Sbjct: 375 PDIIS---YNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETA 431

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            KL ++M  R   P +  +T L+ G CK G ++ AK    +M   G  PD   Y   + G
Sbjct: 432 LKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             ++G    AF+L +EM  KG  P+  +Y V +  LC++  +EEA     +M R G   D
Sbjct: 492 ELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPD 551

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
            VTYT+ +    ++  +    EI   M+ RG  P  +TY  ++ AH     L+  +    
Sbjct: 552 HVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFL 611

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM++ G VP+V  YNV+I   CK+ ++ +A   + EM+   + P   ++ ++++     G
Sbjct: 612 EMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMG 671

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
              EA   + +M+G+ +   P   T  ALL  L +  KV+  + + S I+
Sbjct: 672 KWQEALRLYAQMLGKRI--RPDSCTHGALLKKLDKDYKVQAVQFIESLIL 719



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 177/367 (48%), Gaps = 3/367 (0%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           MR RF P +++   +L     +  LV+A  V   M + G  P +  YN +L  + + G++
Sbjct: 194 MRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEV 253

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A +L+ +M+ +GC P+  ++ VLI  L +  ++++A     EM ++G      TY  L
Sbjct: 254 QRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPL 313

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I G+CK   +     + + M+ RG+ P   ++  IM    K+ ++ +  + + +M K   
Sbjct: 314 ICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNL 373

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PD+ +YN +I   C+LG + EA  + +E+   +LS    ++  ++ G    G L  A +
Sbjct: 374 MPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALK 433

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             ++M+ RG+   P   T   L+N   +   + MAK+ +  ++  G   + +A+T  I  
Sbjct: 434 LKEDMINRGI--HPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAER 593
               G   +A     +M+     P   T+   + GL KL N + A E+ +K +R      
Sbjct: 492 ELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPD 551

Query: 594 QITFKMY 600
            +T+  +
Sbjct: 552 HVTYTSF 558



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 6/235 (2%)

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            LI G+   +    C  + + M++   LP+      I+     K  L + +E+   M + 
Sbjct: 176 VLIGGYLNYQ----CLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEY 231

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  P V+ YN ++   CK GE++ A+++  +M+     P   +F V+++G   +G L +A
Sbjct: 232 GIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQA 291

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
               +EM   GL  +P   T   L+    +   +  A  +W  +VT+G    V +    +
Sbjct: 292 KGLIQEMAKAGLRVSPY--TYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIM 349

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +     G + +A     DM+  ++MP   ++  L+ G  +L N   A  + +++R
Sbjct: 350 YGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELR 404


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 206/427 (48%), Gaps = 25/427 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++  L K   + A     E+M   K  P L+T   + +L+     A  V++A +V +
Sbjct: 109 YTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLT---YTVLVDGLCKAHKVERACDVFE 165

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEG 257
           EM + G +PD   +  L+D L K   V EA KL D M  R  P +   +TS++ G CK G
Sbjct: 166 EMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCG 225

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA   + +M+     P +  Y+ +++GY  MGK+ +AF +++EM  + C P+  SYT
Sbjct: 226 RIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYT 285

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           + I+AL  + + EEA + F  M   GC+ D+ TY  +I  FCK   +     +L  M + 
Sbjct: 286 MFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKA 345

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + PN+  Y  IM    K   LEE +EL   + K G +P    YN VI   CKL ++ EA
Sbjct: 346 AVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEA 405

Query: 438 VNVWNEME--AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           + +  EM+     L P   ++ +++HG    G    A +   EM+  G++  P   T  +
Sbjct: 406 LELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVI--PDCFTYTS 463

Query: 496 LLNSLLRAQKVEMAKDV---------------WSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           L+ +L  A KV  A ++               +  +V   C  +V A    +  +  NGH
Sbjct: 464 LIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGH 523

Query: 541 VKEACSY 547
                ++
Sbjct: 524 TPNEFTF 530



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 185/424 (43%), Gaps = 29/424 (6%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL+R FA+    +    +L EM   G   +    G +L ALC    + +A   F+   
Sbjct: 32  FNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDKAVSYFNSRT 91

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           E                C+  + +EA             PD V Y  ++ G  + G    
Sbjct: 92  EE--------------ACRLFEAIEA-------------PDSVTYTAIVDGLFKAGNYDA 124

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
             E  ++M    C+P   +YTVL+  LC+  K+E A   F EM R G + D++ Y++LI 
Sbjct: 125 GLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLID 184

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G  K+ ++D   +++D MI RG  P  + Y  I+    K   ++E V+ + EMR+    P
Sbjct: 185 GLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRP 244

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            V  Y+ ++     +G+++EA  V  EM     +P T S+ + +      G   EA + F
Sbjct: 245 RVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVF 304

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           + MV +G    P   T   ++++  +   +  A  V   +     + N Y +T+ +    
Sbjct: 305 ETMVEKG--CKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFV 362

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
            +  ++EA      ++   ++P   T+  ++  L KL     A E+  ++++   E + +
Sbjct: 363 KSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPS 422

Query: 597 FKMY 600
              Y
Sbjct: 423 IVTY 426



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 172/384 (44%), Gaps = 49/384 (12%)

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SLL    + G+L +A   L   + +  EP++  +N LL G+A          LL+EM+ +
Sbjct: 2   SLLLALVRGGQLSDA---LGFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKAR 58

Query: 308 GCDPNANSYTVLIQALCRMEKM-----------EEANRAFVEME---------------- 340
           G   N  ++ V++ ALC    +           EEA R F  +E                
Sbjct: 59  GITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFK 118

Query: 341 ---------------RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
                           S CE  ++TYT L+ G CK+ K++R  ++ + MI++G  P+ + 
Sbjct: 119 AGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIA 178

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++    K   ++E  +L+  M   G  P    Y  ++   CK G ++EAV    EM 
Sbjct: 179 YSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMR 238

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
              L P  D++  +V G++G G + EA    +EM  R    AP   +    + +L    +
Sbjct: 239 RRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRD--CAPDTISYTMFIEALYSIGR 296

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD-ADVMPQPDTFA 564
            E A+ V+  +V KGC+ +++ + I I +    G +  A ++ L +MD A V P    + 
Sbjct: 297 REEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMA-AATHVLRLMDKAAVKPNRYIYT 355

Query: 565 KLMRGLKKLYNRQIAAEITEKVRK 588
            +M G  K    + A E+ +++ K
Sbjct: 356 MIMDGFVKSSRLEEALELYQRILK 379


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 202/398 (50%), Gaps = 3/398 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T +   LM+       VKK++   D++   G + ++  +G LL+ LCK    + A KL  
Sbjct: 202 TIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLR 261

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
            + +R  +P +  + +++ G CK+  + EA     +M   G  PD++ Y+ L+ G+   G
Sbjct: 262 MIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAG 321

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           ++  AF LL EM  K  +P+  +YT+LI ALC+  K++EA      M + G + +VVTY+
Sbjct: 322 QLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYS 381

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           TL+ G+C   ++    +I  +M+Q  + P+  +Y  ++    K + ++E + L+ EM   
Sbjct: 382 TLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHK 441

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
             VP+   YN +I   CK G +  A+++  E+          ++  ++ G      L +A
Sbjct: 442 NVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKA 501

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              F +M  RG+   P   T  AL++ L +  +++ A+ ++  I+ KGC ++VY + + I
Sbjct: 502 IALFMKMKERGI--QPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMI 559

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             L   G + EA +    M D   +P   TF  ++R L
Sbjct: 560 GGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSL 597



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 178/360 (49%), Gaps = 10/360 (2%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFAS 186
           S +P+ V    +Y  +I  L K +     +    EM  R   P +IT   +  L+  F  
Sbjct: 267 STRPDVV----MYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVIT---YSTLICGFCL 319

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRH 245
           A  +  A  +L+EM      PD + +  L+DALCK   +KEA  L   M +E  KP++  
Sbjct: 320 AGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVT 379

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +++L+ G+C  G++  AK +   M      P +  YN +++G  +   + +A  LL+EM 
Sbjct: 380 YSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREML 439

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            K   PN  +Y  LI  LC+  ++  A     E+   G  ADV+TYT+L+ G CK++ +D
Sbjct: 440 HKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLD 499

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +   +   M +RGI PN+ TY  ++    K   L+   +L   +   GC  DV  YNV+I
Sbjct: 500 KAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMI 559

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK G L EA+ + ++ME     P   +F +++     +    +A +   EM+ +GLL
Sbjct: 560 GGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 619



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 199/393 (50%), Gaps = 9/393 (2%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERF 239
           M+ F +A  + K +EV       G EPD      L++  C    +  +  +  + ++  +
Sbjct: 145 MKHFPTAISLSKQMEV------KGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGY 198

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           +P+    T+L+ G C +G++ ++ +   ++   GF+ + V Y  LL+G  ++G+   A +
Sbjct: 199 QPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIK 258

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           LL+ +  +   P+   Y  +I  LC+ + + EA   + EM   G   DV+TY+TLI GFC
Sbjct: 259 LLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFC 318

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
            + ++   + +L+ M  + I P+  TY  ++ A  K+ +L+E   L+G M K G  P+V 
Sbjct: 319 LAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVV 378

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            Y+ ++   C +GE+  A  +++ M    ++P   S+ +M++G      + EA    +EM
Sbjct: 379 TYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREM 438

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           + + ++  P   T  +L++ L ++ ++  A D+   +  +G   +V  +T  +  L  N 
Sbjct: 439 LHKNVV--PNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQ 496

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           ++ +A +  + M +  + P   T+  L+ GL K
Sbjct: 497 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCK 529



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 191/426 (44%), Gaps = 26/426 (6%)

Query: 225 VKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           V +A   F+ M   R  PS+  F  +L    K      A  +  QM+  G EPD+V  + 
Sbjct: 113 VHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSI 172

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L++ +  +G+M  +F +L ++ + G  PN    T L++ LC   +++++     ++   G
Sbjct: 173 LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQG 232

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEEC 402
            + + V+Y TL++G CK  +  RC   L  MI+ R   P+ + Y  I+    K + + E 
Sbjct: 233 FQMNQVSYGTLLNGLCKIGE-TRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEA 291

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +   EM   G  PDV  Y+ +I   C  G+L  A ++ NEM   +++P   ++ +++  
Sbjct: 292 YDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDA 351

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +G L EA      M   G+   P   T   L++      +V  AK ++  +V     
Sbjct: 352 LCKEGKLKEAKNLLGVMTKEGV--KPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVN 409

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL------------ 570
            +V ++ I I+ L     V EA +   +M+  +V+P   T+  L+ GL            
Sbjct: 410 PSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDL 469

Query: 571 -KKLYNRQIAAEI---TEKVRKMAAERQI-----TFKMYKRRGERDLKEKAKKQVDGRKR 621
            K+L++R   A++   T  +  +   + +      F   K RG +  K      +DG  +
Sbjct: 470 MKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCK 529

Query: 622 RARQRR 627
            AR + 
Sbjct: 530 GARLKN 535


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 251/513 (48%), Gaps = 17/513 (3%)

Query: 70  FSHDV----EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRY 124
           ++H V    E+  RILK F    P  E AL+   + +   L   ++    D G N+  ++
Sbjct: 53  YTHSVRVLDERFIRILKIFKWG-PDAEKALEVLMLRVDHWLVREIMK--TDIGVNVKMQF 109

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA+K+ NY H    Y ALI  L  + ++G +W +++EM +    ++T      ++R  
Sbjct: 110 FRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRML 169

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS 242
            +A+MV KAI +  ++    C+P    +  ++  L      ++  +L++EM       P 
Sbjct: 170 GNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPD 229

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              +++L+  +CK G+   A  +L +MKD G +P   +Y  L++ + ++  +  A  L +
Sbjct: 230 TMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFE 289

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EMR + C P+  +YT LI+ L +  +++EA   F EM+R GC  D +    +I+   K+ 
Sbjct: 290 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAG 349

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNY 421
           ++D   ++   M     +P+ +TY  I+ A  E K    E       M++ G  P    Y
Sbjct: 350 RLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 409

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMV 480
           +++I   CK   +++A+ +  EM+     P   ++  ++   LG+    + ACE F+E+ 
Sbjct: 410 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELK 468

Query: 481 GR-GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G  S+  Y     ++  L +A +++ A +++  +   GC  +VYA+   +  L   G
Sbjct: 469 ENCGSSSSRVYAV---MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTG 525

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            + EA S    M +   +P  +++  ++ GL+K
Sbjct: 526 MLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 169/367 (46%), Gaps = 37/367 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ++I  L    ++  V  L  EM  E      T  +  L+  F        AI++L+EM
Sbjct: 197 YNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEM 256

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKL 259
              G +P   ++  L+    K + V  A  LF+EMR ++ +P +  +T L+ G  K G++
Sbjct: 257 KDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 316

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA +   +M+  G  PD +V NN+++   + G++ DA +L +EM    C P+  +Y  +
Sbjct: 317 DEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTI 376

Query: 320 IQALCRME-KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           I+AL   + +  E    F  M+ SG      TY+ LI GFCK+ ++++   +L+ M ++G
Sbjct: 377 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKG 436

Query: 379 ILPNQLTYLHIM--------------LAHEKKEE---------------------LEECV 403
             P    Y  ++              L  E KE                      L++ +
Sbjct: 437 FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAI 496

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +  EM K+GC PDV  YN ++    + G L EA++    M+     P  +S+ ++++G 
Sbjct: 497 NMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGL 556

Query: 464 LGQGCLI 470
             Q  LI
Sbjct: 557 QKQEDLI 563



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 10/234 (4%)

Query: 110 VINRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +IN  G AG L     ++         P+ V    + +AL +S S+  +  + +  M+E 
Sbjct: 341 MINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE- 399

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
               P   T   + IL+  F     ++KA+ +L+EM + G  P    +  L+DAL K   
Sbjct: 400 SGISPSSFT---YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456

Query: 225 VKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
              A +LF E++E     S R +  ++    K G+L +A  +  +M   G  PD+  YN 
Sbjct: 457 YDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNA 516

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           L+SG A+ G + +A   ++ M+  GC P+ NSY +++  L + E +    R F+
Sbjct: 517 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDLIVQWRCFL 570


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 131/492 (26%), Positives = 221/492 (44%), Gaps = 48/492 (9%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEV 176
           +L  +++ WA +Q  Y H    Y  L+  L K         + +++      P L+T   
Sbjct: 8   DLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVT--- 64

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL+R    A    +A+E L  + ++   PD ++F  L+  L K+ +  +A KLF+ M 
Sbjct: 65  FKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENME 124

Query: 237 -ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ--------------------------- 268
             R KP +  + +++ G CK G L +A+ +L +                           
Sbjct: 125 SSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASR 184

Query: 269 ----------MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
                     MK AG  PD++  N L+SG  + G + +A E+L  M+  G  P+  +Y  
Sbjct: 185 IREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNS 244

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I ALC   K+ EA      M    C  D+VT+ TL+ GFCK+  + R  E+L+ M +  
Sbjct: 245 IIHALCVAGKVVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN 301

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ILP+ +TY  ++    +  +++    L+ E+ + G +PDV  Y  ++   CK GE++EA 
Sbjct: 302 ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 361

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  EM       G   +  +V G+   G + +A E   EMV   ++  P   T   +L 
Sbjct: 362 KLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMV--PPLFTYNIVLG 419

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L++   +  A  + S +V +G   +V  +   I  L     V+EAC    +M      P
Sbjct: 420 GLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFP 479

Query: 559 QPDTFAKLMRGL 570
              T   ++ GL
Sbjct: 480 NDVTLGSVVFGL 491



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 210/424 (49%), Gaps = 9/424 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI +  +  +     A  E+M+     P ++T     IL+        V++A+E+LD
Sbjct: 172 YNTLINAFYRASRIREACAFREKMKAAGINPDVLTCN---ILVSGICKDGDVEEALEILD 228

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            M   G  PD   +  ++ ALC    V EAA++   M     P L  F +LL G+CK G 
Sbjct: 229 GMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS--CSPDLVTFNTLLDGFCKAGM 286

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L  A  VL +M      PD++ Y  L++G  ++G++  AF LL+E+ R+G  P+  +YT 
Sbjct: 287 LPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTS 346

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC+  ++EEA++   EM   GC   VV Y++L+SG+C++  + +  EIL  M+   
Sbjct: 347 LVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSIN 406

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++P   TY  ++    K   + + V L+ ++   G VPDV  YN +I   CK   ++EA 
Sbjct: 407 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 466

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           ++ +EM +    P   +   +V G    G + +A     EM  +    AP      +L++
Sbjct: 467 DLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRK--RHAPNVVVYTSLID 524

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L ++ +++ A  V   +  +G  L+ +A+   I S+   G V EA +   +M+    +P
Sbjct: 525 GLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLP 584

Query: 559 QPDT 562
              T
Sbjct: 585 DGST 588



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 9/349 (2%)

Query: 228 AAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A + FD   E+  +K  +  +  LL    K G       V   +  +G  P++V +  L+
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILI 69

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  + G+   A E L+ +      P+   + VLI  L +    ++A + F  ME S  +
Sbjct: 70  RGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVK 129

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG--ILPNQLTYLHIMLAHEKKEELEECV 403
            ++VTY T+ISG CKS  +++  E+L+ MI++G    P+ +TY  ++ A  +   + E  
Sbjct: 130 PEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREAC 189

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
               +M+  G  PDV   N+++   CK G+++EA+ + + M+ A   P   ++  ++H  
Sbjct: 190 AFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHAL 249

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G ++EA E  K M       +P   T   LL+   +A  +  A +V   +  +    
Sbjct: 250 CVAGKVVEAAEILKTMS-----CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILP 304

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +V  +TI ++ L   G V+ A     +++    +P    +  L+ GL K
Sbjct: 305 DVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 353



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 4/187 (2%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P L T   + I++        + KA+ ++ ++   G  PD   +  L+D LCK + V+EA
Sbjct: 409 PPLFT---YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA 465

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
             L DEM  R   P+     S+++G C+ G++ +A  ++V+M      P++VVY +L+ G
Sbjct: 466 CDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDG 525

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             +  +M DA  +L  MR +G   +  +Y  LI ++    ++ EA   + EM   G   D
Sbjct: 526 LCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPD 585

Query: 348 VVTYTTL 354
             T  TL
Sbjct: 586 GSTSKTL 592



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMV 190
           N V     Y  ++  L K        +L+ ++  R   P ++T   +  L+     A  V
Sbjct: 406 NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVT---YNTLIDGLCKANRV 462

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           ++A ++ DEM   GC P++   G ++  LC+   V +A  L  EM R+R  P++  +TSL
Sbjct: 463 REACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSL 522

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK  ++ +A  VL  M+  G   D   Y  L+   +  G++ +A  +  EM  +G 
Sbjct: 523 IDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGF 582

Query: 310 DPNANSYTVLIQA 322
            P+ ++   L +A
Sbjct: 583 LPDGSTSKTLEEA 595



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 35/248 (14%)

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           E+ G + DV +Y  L+    KS    R  ++   ++  G  PN +T+  ++  + K  + 
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
              +E +  + +    PDV  +NV+I    K G   +AV ++  ME++ + P   ++  +
Sbjct: 79  MRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTV 138

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G    G L +A E  +EM+ +G  SAP   T   L+N+  RA ++             
Sbjct: 139 ISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRI------------- 185

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
                                 +EAC++   M  A + P   T   L+ G+ K  + + A
Sbjct: 186 ----------------------REACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEA 223

Query: 580 AEITEKVR 587
            EI + ++
Sbjct: 224 LEILDGMK 231


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 196/383 (51%), Gaps = 9/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A ++ +R+    L+   V  +  ++      + V  A ++  
Sbjct: 165 YGTLIHGLCKV---GETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYS 221

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  L+        +K+A  LF++M  E  KP +  F  L+ G+CK+G
Sbjct: 222 EMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDG 281

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ E K V   M   G +P++V Y +L+ GY  + ++  A  +L  M ++G +P+  SY 
Sbjct: 282 KMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYN 341

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+++K++EA   F EM       DVVTY +LI G CK  KI    +++D M  R
Sbjct: 342 ILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 401

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  I+ A  K  ++++ + L+ +++  G  P++  Y ++I   CK G L++A
Sbjct: 402 GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 461

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            N++ ++     +   +++ VM+HGF  +G   EA     +M     +  P   T + ++
Sbjct: 462 HNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCI--PDAVTYEIII 519

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            SL    + + A+ +   ++T+G
Sbjct: 520 RSLFDKDENDKAEKLRE-MITRG 541



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 217/446 (48%), Gaps = 18/446 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLI-------------TTEVFVILMRRFA 185
           +  ++ SL K + +  V +L ++M  E   P L               T  F  L++   
Sbjct: 79  FNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLC 138

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLR 244
               + +A+   D +   G + D+  +G L+  LCK    + A  L   +     +P++ 
Sbjct: 139 LKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVV 198

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +++++ G CK+  + +A  +  +M   G  P++V Y+ L+SG+  +G++ DA +L  +M
Sbjct: 199 MYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKM 258

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             +   P+  ++ +L+   C+  KM+E    F  M + G + +VVTY +L+ G+C  +++
Sbjct: 259 ILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEV 318

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++   IL +M QRG+ P+  +Y  ++    K ++++E + L  EM     +PDV  YN +
Sbjct: 319 NKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSL 378

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CKLG++  A+ + +EM    + P   ++  ++        + +A     ++  +G+
Sbjct: 379 IDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGI 438

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   L++ L +  ++E A +++  ++ KG  + V  +T+ IH   + G   EA
Sbjct: 439 --RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEA 496

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGL 570
            +    M D   +P   T+  ++R L
Sbjct: 497 LALLSKMKDNSCIPDAVTYEIIIRSL 522



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 213/486 (43%), Gaps = 58/486 (11%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           F +   V  A  +   + +    P    F  +L +L K+        L  +M  E   P 
Sbjct: 51  FHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPV 110

Query: 243 LRHF----------------TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           L HF                T+L+ G C +G++ +A      +   GF+ D V Y  L+ 
Sbjct: 111 LFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIH 170

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  ++G+   A +LL+ +      PN   Y+ +I  +C+ + + +A   + EM   G   
Sbjct: 171 GLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISP 230

Query: 347 DVVTYTTLIS-----------------------------------GFCKSRKIDRCYEIL 371
           +VVTY+ LIS                                   GFCK  K+     + 
Sbjct: 231 NVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVF 290

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M+++GI PN +TY  +M  +   +E+ +   ++  M + G  PD+ +YN++I   CK+
Sbjct: 291 AMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKI 350

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            ++ EA+N++ EM    + P   ++  ++ G    G +  A +   EM  RG+   P   
Sbjct: 351 KKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV--PPDII 408

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  ++L++L +  +V+ A  + + +  +G   N+Y +TI I  L   G +++A +   D+
Sbjct: 409 TYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDL 468

Query: 552 MDADVMPQPDTFAKLMRGL--KKLYNRQIAAEITEKVRKMAAERQITFKMYKRR-GERDL 608
           +        +T+  ++ G   K L++  +A  +++          +T+++  R   ++D 
Sbjct: 469 LVKGYNITVNTYTVMIHGFCNKGLFDEALAL-LSKMKDNSCIPDAVTYEIIIRSLFDKDE 527

Query: 609 KEKAKK 614
            +KA+K
Sbjct: 528 NDKAEK 533


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 191/401 (47%), Gaps = 7/401 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS- 149
           +E AL  S V L   +  +++ R        +R++ WA  Q +Y H    Y  +I  LS 
Sbjct: 10  MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 69

Query: 150 ---KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
              K ++F  V  +++ M++    ++  +V + ++R++    +         +  +   +
Sbjct: 70  TKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTHVQKFAKRKRIRVKTQ 129

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           P+   F  LLDALCK   VKE   L   MR R KP    F  L +GWC+     +A  +L
Sbjct: 130 PEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMKLL 189

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD---PNANSYTVLIQAL 323
            +M +AG +P+   Y   +  + Q G + +A +L   M  KG     P A ++ ++I AL
Sbjct: 190 EEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVAL 249

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            + +K EE       M  +GC  DV TY  +I G C + K+D  Y+ LD M  +G  P+ 
Sbjct: 250 AKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDI 309

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +TY   +    +  + +E ++L G M +  C P V  YN++I +  ++ +   A N W E
Sbjct: 310 VTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTE 369

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           M+        +++  M++G        EAC   +E+V +GL
Sbjct: 370 MDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGL 410



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 10/320 (3%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+I  +N LL    + G + +   LL+ MR +   P+AN++ VL    CR+   ++A +
Sbjct: 129 QPEINAFNMLLDALCKCGLVKEGEALLRRMRHR-VKPDANTFNVLFFGWCRVRDPKKAMK 187

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIML 391
              EM  +G + +  TY   I  FC++  +D   ++ D MI +G     P   T+  +++
Sbjct: 188 LLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIV 247

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K ++ EEC EL+G M   GC+PDVS Y  VI   C   ++ EA    +EM      P
Sbjct: 248 ALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPP 307

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLLRAQKVEMA 509
                +V  + FL   C     +   ++ GR + S  AP   T   L++        + A
Sbjct: 308 D----IVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGA 363

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            + W+ +  + C  +V  +   I+ LF     KEAC    ++++  +      F   +  
Sbjct: 364 FNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMR 423

Query: 570 LKKLYNRQIAAEITEKVRKM 589
           L ++ N +   +++E ++K 
Sbjct: 424 LSEVGNLKAIHKVSEHMKKF 443


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 204/433 (47%), Gaps = 10/433 (2%)

Query: 110 VINRCGDAGNLGYRY----YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM- 164
           V+N     G+  Y +    +++ +    +  +   Y  +IK+L K+ +         EM 
Sbjct: 166 VLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMP 225

Query: 165 -RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
            +   P + T   +  LM      R V +A+ +LDEM   GC P+   F  L+DAL KN 
Sbjct: 226 LKNCNPDVFT---YSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 282

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            +  AAKL D M  +   P+   + +L++G C +GKL +A  +L +M  +   P+ V Y 
Sbjct: 283 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYG 342

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +++G  +  +  D   +L  M  +G   N   Y+ LI  L +  K E A R + EM   
Sbjct: 343 TIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEK 402

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC+ +VV Y   I G C+  K D   +IL  M+ +G LPN  TY  +M    KK + ++ 
Sbjct: 403 GCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKA 462

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + +  EM       +V   +V++   C+ G L+EA+ VW  M    L P   ++  M+ G
Sbjct: 463 ILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKG 522

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G + +  + F EM  +   S P   T   L N+L R   +  A D+ + ++ +GC+
Sbjct: 523 LCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCD 582

Query: 523 LNVYAWTIWIHSL 535
            +     I++ +L
Sbjct: 583 PDSLTCNIFLETL 595



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 206/435 (47%), Gaps = 9/435 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR LI++ +  R+F  +  +++ M++E  +++T  +F+++ +    A +  +A+     M
Sbjct: 93  YR-LIENYATSREFHFIHQVLDRMKREG-RVLTETIFILIFKACGKAHLPGEAVNFFHRM 150

Query: 201 PK-YGCEPDEFVFGCLLDALCKNSSVKEAAK----LFDEMRERFKPSLRHFTSLLYGWCK 255
                C+     F  +L+ + +      A K    +F    + F+P+L  +  ++   CK
Sbjct: 151 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK 210

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++  A     +M      PD+  Y+ L++G  +  ++ +A  LL EM+ +GC PN  +
Sbjct: 211 LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVT 270

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           + VLI AL +   +  A +    M   GC  + VTY TLI G C   K+D+   +L+ M+
Sbjct: 271 FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMV 330

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
               +PNQ+TY  I+    K+   E+ V ++  M + G   +   Y+ +I    K G+ +
Sbjct: 331 SSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSE 390

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            AV +W EM      P    +   + G        EA +  +EM+ +G L  P   T  +
Sbjct: 391 NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL--PNAFTYSS 448

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+    +    + A  VW  ++++    NV   ++ ++ L  +G ++EA +    M+   
Sbjct: 449 LMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEG 508

Query: 556 VMPQPDTFAKLMRGL 570
           + P    ++ +++GL
Sbjct: 509 LKPDVVAYSSMIKGL 523



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 190/428 (44%), Gaps = 42/428 (9%)

Query: 159 ALMEEMRKEKPQL----ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           ++  ++ K +PQ     +    F  L+  +A++R      +VLD M + G    E +F  
Sbjct: 70  SISPQIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFIL 129

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           +  A  K     EA   F  M                  CK+                  
Sbjct: 130 IFKACGKAHLPGEAVNFFHRMANDLH-------------CKQ------------------ 158

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEM---RRKGCDPNANSYTVLIQALCRMEKMEE 331
              +  +N++L+   Q G  + AF+    +     KG  PN  +Y ++I+ALC++ +++ 
Sbjct: 159 --TVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDR 216

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   F EM    C  DV TY+TL++G CK R++D    +LD M   G LPN +T+  ++ 
Sbjct: 217 AVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLID 276

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K  +L    +L+  M   GCVP+   YN +I   C  G+L +A+++  +M ++   P
Sbjct: 277 ALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVP 336

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  +++G + Q    +       M  RG   A +Y    +L++ L +  K E A  
Sbjct: 337 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ-KANEY-IYSSLISGLFKEGKSENAVR 394

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           +W  +  KGC+ NV  +  +I  L  +    EA     +M+    +P   T++ LM+G  
Sbjct: 395 LWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFF 454

Query: 572 KLYNRQIA 579
           K  + Q A
Sbjct: 455 KKGDSQKA 462



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 156/332 (46%), Gaps = 29/332 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  +I  L K R+      ++  M +E+ Q     ++  L+         +
Sbjct: 336 PNQV----TYGTIINGLVKQRRAEDGVHILMSM-EERGQKANEYIYSSLISGLFKEGKSE 390

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+ +  EM + GC+P+  V+G  +D LC++    EA  +  EM  + F P+   ++SL+
Sbjct: 391 NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLM 450

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+ K+G   +A  V  +M       ++V  + LL+G  + G++ +A  +   M  +G  
Sbjct: 451 KGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLK 510

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEME--RSGCEADVVTYTTLISGFCKSRKIDRCY 368
           P+  +Y+ +I+ LC +  +++  + F EM+        DVVTY  L +  C+   + R  
Sbjct: 511 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAI 570

Query: 369 EILDSMIQRGILPNQLT---YLH-----IMLAHEKKEELEE-CVELMGEMRKIGCV---- 415
           ++L+SM+  G  P+ LT   +L      I    + +  L+E  V L+   RK+  +    
Sbjct: 571 DLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVE 630

Query: 416 --------PDVSNYNVVIRLACKLGELKEAVN 439
                   P+ S ++ VI+  CK   ++E ++
Sbjct: 631 EMLLRFLPPEPSTWSRVIQRTCKPKRIRETID 662



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 8/211 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V    VY A I  L +  K      +++EM   K  L     +  LM+ F      
Sbjct: 405 KPNVV----VYGAFIDGLCRDEKPDEAEDILQEML-SKGFLPNAFTYSSLMKGFFKKGDS 459

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSL 249
           +KAI V  EM       +      LL+ LC++  ++EA  ++  M  E  KP +  ++S+
Sbjct: 460 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 519

Query: 250 LYGWCKEGKLVEAKYVLVQMK--DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           + G C  G + +   +  +M+  +    PD+V YN L +   +   +T A +LL  M  +
Sbjct: 520 IKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE 579

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           GCDP++ +  + ++ L       +  R F++
Sbjct: 580 GCDPDSLTCNIFLETLRERINPPQDGRLFLD 610



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 94/239 (39%), Gaps = 37/239 (15%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T+  LI  +  SR+    +++LD M + G +  +  ++ I  A  K     E V     M
Sbjct: 91  TFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRM 150

Query: 410 -RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
              + C   V ++N V+ +  + G+   A                  F + V G   +G 
Sbjct: 151 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAF----------------KFYLHVFGANSKG- 193

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
                              P   T   ++ +L +  +++ A D +  +  K C  +V+ +
Sbjct: 194 -----------------FQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTY 236

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +  ++ L     V EA  + LD M A+  +P P TF  L+  L K  +   AA++ + +
Sbjct: 237 STLMNGLCKERRVDEAV-FLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNM 294


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 205/442 (46%), Gaps = 43/442 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +  +      L  +M ++   P   T   + +L+   + +    +A+ + +
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCP---TVRTYTVLIYALSGSGRKVEALNLFN 323

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + GCEP+   +  L+D LCK + + EA K+  EM E+   PS+  + +L+ G+CKEG
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383

Query: 258 -----------------------------------KLVEAKYVLVQMKDAGFEPDIVVYN 282
                                              K+ +A  +L +M +    P ++ YN
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYN 443

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L+ G  ++  +  A+ LL  M   G  P+  +Y+V I  LC+  ++EEA   F  ++  
Sbjct: 444 SLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAK 503

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G +A+ V YT LI G+CK  KID  Y +L+ M+    LPN  TY  ++    K+++++E 
Sbjct: 504 GVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEA 563

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             L+ +M  +G  P V  Y ++I    K G    A+ V+N M +    P   ++   +H 
Sbjct: 564 SSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHA 623

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           +  QG L E  +   +M   G+L  P   T   L++   R      A D   C+V  GC+
Sbjct: 624 YFSQGMLEEVDDVIAKMNEEGIL--PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCK 681

Query: 523 LNVYAWTIWIHSLFSNGHVKEA 544
            ++Y  +I I +L     +KE 
Sbjct: 682 PSLYIVSILIKNLSHENRMKET 703



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 207/434 (47%), Gaps = 16/434 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV------FVILMRRFASARMVKKAI 194
           Y  ++ SLSK       + L++EM+    +L+  ++      F  ++  +     V +A 
Sbjct: 162 YNTILMSLSK-------FLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAE 214

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
               ++ + G  PD F +  L+   C+N  V  A ++F  M ++  + +   +T+L++G 
Sbjct: 215 LYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGL 274

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+ G++ EA  +   M +    P +  Y  L+   +  G+  +A  L  EM+ KGC+PN 
Sbjct: 275 CEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++YTVLI  LC+  KM+EA +   EM   G    VVTY  LI G+CK   ID  +EILD 
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL 394

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M      PN  TY  ++    KK ++ + + L+ +M +    P +  YN +I   CK+ +
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND 454

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L+ A  + + M    L P   ++ V +     +G + EA   F  +  +G+ +     T 
Sbjct: 455 LESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYT- 513

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            AL++   +  K+++A  +   ++   C  N Y + + I  L     +KEA S    M+ 
Sbjct: 514 -ALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT 572

Query: 554 ADVMPQPDTFAKLM 567
             V P   T+  L+
Sbjct: 573 MGVKPTVVTYTILI 586



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 198/395 (50%), Gaps = 3/395 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+     A  + +A+++  +M +  C P    +  L+ AL  +    EA  LF+EM+E+ 
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T L+ G CKE K+ EA+ +L +M + G  P +V YN L+ GY + G + DAF
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+L  M    C PN  +Y  LI  LC+  K+ +A     +M        ++TY +LI G 
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   ++  Y +L  M + G++P+Q TY   +    K+  +EE   L   ++  G   + 
Sbjct: 450 CKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y  +I   CK+G++  A ++   M   +  P + ++ V++ G   +  + EA     +
Sbjct: 510 VIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  G+   P   T   L+  +L+    + A  V++ +V+ G + +V  +T ++H+ FS 
Sbjct: 570 MLTMGV--KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQ 627

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           G ++E       M +  ++P   T+  L+ G  +L
Sbjct: 628 GMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARL 662



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 224/496 (45%), Gaps = 25/496 (5%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE----KPQLITTEVFVI 179
           ++ W + +P + H+   Y +++  L + R  G    +   M K     +  L   EVF  
Sbjct: 87  FFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRK 146

Query: 180 L-----------MRRFASARMVKKAIEVLDEMPKYGCE-------PDEFVFGCLLDALCK 221
           +           +R + +  M      ++DEM     E       P+ + F  +++  CK
Sbjct: 147 MNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCK 206

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
             +V EA     ++ +    P    +TSL+ G C+   +  A  V + M   G + + V 
Sbjct: 207 IGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVS 266

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y NL+ G  + G++ +A +L  +M    C P   +YTVLI AL    +  EA   F EM+
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMK 326

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             GCE +V TYT LI G CK  K+D   ++L  M ++G++P+ +TY  ++  + K+  ++
Sbjct: 327 EKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMID 386

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +  E++  M    C P+   YN +I   CK  ++ +A+ + N+M    LSP   ++  ++
Sbjct: 387 DAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           HG      L  A      M   GL+  P   T    +++L +  +VE A  ++  +  KG
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLV--PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
            + N   +T  I      G +  A S    M++   +P   T+  L+ GL K    + A+
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 581 EITEKVRKMAAERQIT 596
            +  K+  M  +  + 
Sbjct: 565 SLVAKMLTMGVKPTVV 580



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 215/489 (43%), Gaps = 63/489 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K RK     AL+ +M  RK  P LIT   +  L+        ++ A  +L 
Sbjct: 407 YNELICGLCKKRKVHKAMALLNKMLERKLSPSLIT---YNSLIHGQCKVNDLESAYRLLS 463

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G  PD++ +   +D LCK   V+EA  LFD ++ +  K +   +T+L+ G+CK G
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+  A  +L +M +    P+   YN L+ G  +  KM +A  L+ +M   G  P   +YT
Sbjct: 524 KIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYT 583

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  + +    + A + F  M   G + DV TYT  +  +     ++   +++  M + 
Sbjct: 584 ILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEE 643

Query: 378 GILPNQLTY-------------------------------LHIM------LAHEKKE--- 397
           GILP+ +TY                               L+I+      L+HE +    
Sbjct: 644 GILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKET 703

Query: 398 -------------ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
                        E E  ++L  +M + GC  DVS Y  +I   C+   L+EA  + + M
Sbjct: 704 RSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHM 763

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           +   +SP  D +  ++      G   EA      MV  GLL  P   + K L+  L    
Sbjct: 764 KERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLL--PLLESYKLLVCGLYIEG 821

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA-DVMPQPDTF 563
             E AK V+  +++ G   +  AW + I  L     V E CS  +D+M+     P P T+
Sbjct: 822 SNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDE-CSELIDIMEEKGCQPNPLTY 880

Query: 564 AKLMRGLKK 572
           + L+ GL++
Sbjct: 881 SLLIEGLER 889



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 183/418 (43%), Gaps = 63/418 (15%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y ALI    K+ K    ++L+E M  +   L  +  + +L+      + +K+A  ++ +
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDA-CLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G +P    +  L+  + K+ +   A K+F+ M    ++P +  +T+ L+ +  +G 
Sbjct: 570 MLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGM 629

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L E   V+ +M + G  PD+V Y  L+ GYA++G    AF+ LK M   GC P+    ++
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 319 LIQALCRMEKMEE------------------ANRAFVEMERSGCEADVVTYTTLISGFCK 360
           LI+ L    +M+E                  A + F +M   GC  DV  Y  LI+GFC+
Sbjct: 690 LIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQ 749

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
                                              +E LEE   L+  M++ G  P    
Sbjct: 750 -----------------------------------QERLEEAQGLVHHMKERGMSPSEDI 774

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN ++   CKLG   EAV + + M    L P  +S+ ++V G       IE      + V
Sbjct: 775 YNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGL-----YIEGSNEKAKAV 829

Query: 481 GRGLLS-APQYGTL--KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             GLLS    Y  +  K L++ LL+   V+   ++   +  KGC+ N   +++ I  L
Sbjct: 830 FHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 32/307 (10%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW 158
           G +L+ G  +  +       +LGY        QP+ V +Y  +     S   + +   V 
Sbjct: 587 GEMLKDGAFDHALKVFNHMVSLGY--------QPD-VCTYTAFLHAYFSQGMLEEVDDVI 637

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           A M E     P L+T   + +L+  +A   +  +A + L  M   GC+P  ++   L+  
Sbjct: 638 AKMNE-EGILPDLVT---YTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKN 693

Query: 219 LCKNSSVKE------------------AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
           L   + +KE                  A KLF++M E      +  + +L+ G+C++ +L
Sbjct: 694 LSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERL 753

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA+ ++  MK+ G  P   +YN+LL    ++G   +A  L+  M   G  P   SY +L
Sbjct: 754 EEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLL 813

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  L      E+A   F  +   G   D V +  LI G  K   +D C E++D M ++G 
Sbjct: 814 VCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGC 873

Query: 380 LPNQLTY 386
            PN LTY
Sbjct: 874 QPNPLTY 880


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 253/523 (48%), Gaps = 6/523 (1%)

Query: 68  NEFSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYM 126
           +EF H  V +I R+++   +   KLE  ++H    L+P L   V+    D   +   ++ 
Sbjct: 13  DEFRHPLVREICRLIECRSAWNHKLEGKMRHLLRGLKPRLVCAVLLSQSDE-RVALDFFF 71

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           W+ +Q  Y H   VY  ++  LSK +       ++  M +   Q  T + F  +M  ++ 
Sbjct: 72  WSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQR-TPQDFCCVMVSYSR 130

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
           A  ++ A++VL  M K G EP+  V    +  L   + +++A +  + M+     P++  
Sbjct: 131 AGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVT 190

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +  L+ G+C   ++ +A  ++ +M   G  PD V Y  ++    +  ++ +  +++++M 
Sbjct: 191 YNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKME 250

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
                 +  +Y  LI  LC+ +  +EA +   E ++ G + D V Y+ ++  +CK  ++D
Sbjct: 251 DTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMD 310

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +  EI++ M  RG +P+ +TY  I+    +  E+ +  +++ +M K GC P+  +Y   +
Sbjct: 311 QAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFL 370

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +  C+ G   EA  +    E    +P   ++ V++HGF  +G L +AC+  +EM+G+G  
Sbjct: 371 KGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFF 430

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P    +  LL SL R  +V+ AK      +  GC +N   +T  IH       ++ A 
Sbjct: 431 PTPV--EINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAAL 488

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           S   DM  ++  P   T+  ++  L K    + A E+T K+ K
Sbjct: 489 SLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLK 531



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 195/404 (48%), Gaps = 21/404 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y  LIK    + +      L+ EM  +   P  ++   +  +M      R 
Sbjct: 186 PNVV----TYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVS---YYTVMGFLCKNRR 238

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +++ ++V+++M       D+  +  L+  LCK+    EA +   E ++R F+     +++
Sbjct: 239 IREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSA 298

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++  +CKEG++ +AK ++ +M   G  PD+V Y  +++G++Q G++  A ++L++M + G
Sbjct: 299 IVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHG 358

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  SYT  ++ LC+     EA       E      + +TY+ ++ GF +  K+    
Sbjct: 359 CKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDAC 418

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +++  MI +G  P  +    ++ +  +   ++E  + M E   +GC  +  N+  VI   
Sbjct: 419 DVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRF 478

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+  +++ A+++ ++M  ++  P   ++  ++     +G + EA E   +M+ +G+   P
Sbjct: 479 CQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTP 538

Query: 489 -----------QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                      Q G ++ LLN L +    +  +  ++ ++ K C
Sbjct: 539 VTYRTVIHRYGQIGRVEDLLNLLDKMLTRQECRTAFNQVIEKLC 582



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 175/387 (45%), Gaps = 9/387 (2%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D  V+  +LD L K    + A ++   M  R  + + + F  ++  + + GKL  A  VL
Sbjct: 82  DPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVL 141

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
             M+ AG EP+++V N  +        +  A   L+ M+  G  PN  +Y  LI+  C +
Sbjct: 142 TMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDL 201

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            ++E+A     EM   GC  D V+Y T++   CK+R+I    ++++ M    +L +Q+TY
Sbjct: 202 HRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTY 261

Query: 387 ---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
              +H++  H+  +E    ++ + E +K G   D   Y+ ++   CK G + +A  + NE
Sbjct: 262 NTLIHMLCKHQHADE---ALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNE 318

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M      P   ++  +++GF   G + +A +  ++M   G    P   +  A L  L + 
Sbjct: 319 MFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHG--CKPNTVSYTAFLKGLCQK 376

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
                A+++      +    N   +++ +H     G + +AC    +M+     P P   
Sbjct: 377 GNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEI 436

Query: 564 AKLMRGLKKLYNRQIAAEITEKVRKMA 590
             L++ L ++     A +  E+   M 
Sbjct: 437 NLLLQSLCRIGRVDEAKKFMEECLNMG 463



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 5/206 (2%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           +L++       V +A + ++E    GC  +   F  ++   C+   ++ A  L D+M   
Sbjct: 438 LLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLS 497

Query: 239 FK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            K P    +T+++    K+G++ EA  + ++M   G +P  V Y  ++  Y Q+G++ D 
Sbjct: 498 NKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDL 557

Query: 298 FELLKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
             LL +M  R+ C     ++  +I+ LC    +E A++   ++ R+    D  T   L+ 
Sbjct: 558 LNLLDKMLTRQEC---RTAFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHVLME 614

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPN 382
            + +       Y++   M  R ++P+
Sbjct: 615 SYLRKGIPLSAYKVACRMFSRSLIPD 640


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 216/464 (46%), Gaps = 46/464 (9%)

Query: 102 LRPGLTERVIN---RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW 158
           L P L+  ++N   R      LG+R+++W +++ ++  S+  +  +I  L+K   F   W
Sbjct: 58  LAPFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDMLAKDDGFDTYW 116

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF-------- 210
            ++EE++    Q I    F +L+  +A + M +KA+E   +M  +GC+PD F        
Sbjct: 117 KILEELKNSNIQ-IPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHV 175

Query: 211 ---------------------------VFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
                                       F  LL+ LCKN    +A K+FDEM ++   P+
Sbjct: 176 MVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPN 235

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              +T +L G C+  +  +   +L  MK +G  PD +  N LL G+ ++G++ +AF LL+
Sbjct: 236 TMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQ 295

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
              ++G       Y+ LI  L R ++ +E      +M ++G E DVV YT LI GFC+  
Sbjct: 296 LFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +D    +L+ M QRG+ P+   Y  ++        L++   L  E+ K  C P    Y 
Sbjct: 356 MVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYT 415

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM-VG 481
           ++I   C+ G L EA  ++N+ME    SP   +F  ++ G    G L EA   F +M +G
Sbjct: 416 ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIG 475

Query: 482 RG--LLSAPQYGTLKAL--LNSLLRAQKVEMAKDVWSCIVTKGC 521
           +   L      G  + +   N   R  + E A  V   +V  GC
Sbjct: 476 KNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGC 519



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 187/465 (40%), Gaps = 80/465 (17%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           NY  +   +  L+  L K  K      + +EM  +K     T ++ I++     A+    
Sbjct: 196 NYNPNRATFVILLNGLCKNGKTDDALKMFDEM-TQKGIPPNTMIYTIILSGLCQAKRTDD 254

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA------------------------ 228
              +L+ M   GC PD      LLD  CK   + EA                        
Sbjct: 255 VHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLID 314

Query: 229 ----AKLFDEMRE----RFK----PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
               AK +DE++E     FK    P +  +T L+ G+C+ G +  A  +L  M   G  P
Sbjct: 315 GLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSP 374

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D   YN L+ G+  +G +  A  L  E+ +  C P + +YT+LI  +CR   ++EA + F
Sbjct: 375 DTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIF 434

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL--------H 388
            +ME  GC   ++T+  LI G CK+ +++    +   M + G  P+    L         
Sbjct: 435 NQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM-EIGKNPSLFLRLSQGADRVMD 493

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
                 + +  E+   ++ +M K GC P  + Y  ++  +C+ G+L  A ++W +    S
Sbjct: 494 TANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKY-LRS 552

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR--------------GLLSAPQ----- 489
           L    D  + +      +G L +A     EM  +              GL  A +     
Sbjct: 553 LPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEAL 612

Query: 490 --YGTLK------------ALLNSLLRAQKVEMAKDVWSCIVTKG 520
             +  LK             L+N L +   +EMA D++   + KG
Sbjct: 613 KIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKG 657



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 37/327 (11%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V +N ++   A+       +++L+E++         +++VLI A  +    E+A  +F +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 339 MERSGCEADVVTYTT-----------------------------------LISGFCKSRK 363
           M+  GC+ DV TY +                                   L++G CK+ K
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            D   ++ D M Q+GI PN + Y  I+    + +  ++   L+  M+  GC PD    N 
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++   CKLG++ EA  +    E      G   +  ++ G        E  E+ ++M   G
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAG 336

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +   P       L+        V+ A ++ + +  +G   + Y +   I      G + +
Sbjct: 337 I--EPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDK 394

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL 570
           A S  L++   D  P   T+  L+ G+
Sbjct: 395 ARSLQLEISKNDCFPTSCTYTILICGM 421



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 33/270 (12%)

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R F+   R       VT+  +I    K    D  ++IL+ +    I     T+  ++ A+
Sbjct: 82  RFFIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAY 141

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K    E+ VE  G+M+  GC PDV  YN ++ +  +      A+ V+N+M   + +P  
Sbjct: 142 AKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNR 201

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRG----------LLSA---------------- 487
            +FV++++G    G   +A + F EM  +G          +LS                 
Sbjct: 202 ATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNT 261

Query: 488 -------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
                  P   T  ALL+   +  +++ A  +      +G  L +  ++  I  LF    
Sbjct: 262 MKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKR 321

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             E   +C  M  A + P    +  L+RG 
Sbjct: 322 YDEVQEWCRKMFKAGIEPDVVLYTILIRGF 351



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 146/359 (40%), Gaps = 62/359 (17%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALIK    +       +L  E+ K      T+  + IL+       ++ +A ++ ++M
Sbjct: 379 YNALIKGFCDVGLLDKARSLQLEISKNDC-FPTSCTYTILICGMCRNGLLDEARQIFNQM 437

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL--------RHFTSLLYG 252
              GC P    F  L+D LCK   ++EA  LF +M     PSL                G
Sbjct: 438 ENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANG 497

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL------------ 300
           + +  +  +A  VL QM   G  P   VY  L++   + GK++ AF L            
Sbjct: 498 FHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQE 557

Query: 301 ----------------------LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
                                 L EM  K  +     YT+ +  LC+  + EEA + F+ 
Sbjct: 558 DETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLV 617

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG--ILP---NQLTYLHIMLAH 393
           ++    + +  +   LI+G CK   ++   +I    +++G  ++P   NQL    I+   
Sbjct: 618 LKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLIL--- 674

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             +++++  ++L+  M   G   D+  Y +  R+   L      ++VW   E  +++PG
Sbjct: 675 --QDKMKHALDLLNRMNSAG--YDLDEY-LHHRIKSYL------LSVWKAQEMENVAPG 722


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 204/433 (47%), Gaps = 10/433 (2%)

Query: 110 VINRCGDAGNLGYRY----YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM- 164
           V+N     G+  Y +    +++ +    +  +   Y  +IK+L K+ +         EM 
Sbjct: 142 VLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMP 201

Query: 165 -RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
            +   P + T   +  LM      R V +A+ +LDEM   GC P+   F  L+DAL KN 
Sbjct: 202 LKNCNPDVFT---YSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 258

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            +  AAKL D M  +   P+   + +L++G C +GKL +A  +L +M  +   P+ V Y 
Sbjct: 259 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYG 318

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +++G  +  +  D   +L  M  +G   N   Y+ LI  L +  K E A R + EM   
Sbjct: 319 TIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEK 378

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC+ +VV Y   I G C+  K D   +IL  M+ +G LPN  TY  +M    KK + ++ 
Sbjct: 379 GCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKA 438

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + +  EM       +V   +V++   C+ G L+EA+ VW  M    L P   ++  M+ G
Sbjct: 439 ILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKG 498

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G + +  + F EM  +   S P   T   L N+L R   +  A D+ + ++ +GC+
Sbjct: 499 LCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCD 558

Query: 523 LNVYAWTIWIHSL 535
            +     I++ +L
Sbjct: 559 PDSLTCNIFLETL 571



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 206/435 (47%), Gaps = 9/435 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR LI++ +  R+F  +  +++ M++E  +++T  +F+++ +    A +  +A+     M
Sbjct: 69  YR-LIENYATSREFHFIHQVLDRMKREG-RVLTETIFILIFKACGKAHLPGEAVNFFHRM 126

Query: 201 PK-YGCEPDEFVFGCLLDALCKNSSVKEAAK----LFDEMRERFKPSLRHFTSLLYGWCK 255
                C+     F  +L+ + +      A K    +F    + F+P+L  +  ++   CK
Sbjct: 127 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK 186

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++  A     +M      PD+  Y+ L++G  +  ++ +A  LL EM+ +GC PN  +
Sbjct: 187 LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVT 246

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           + VLI AL +   +  A +    M   GC  + VTY TLI G C   K+D+   +L+ M+
Sbjct: 247 FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMV 306

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
               +PNQ+TY  I+    K+   E+ V ++  M + G   +   Y+ +I    K G+ +
Sbjct: 307 SSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSE 366

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            AV +W EM      P    +   + G        EA +  +EM+ +G L  P   T  +
Sbjct: 367 NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL--PNAFTYSS 424

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+    +    + A  VW  ++++    NV   ++ ++ L  +G ++EA +    M+   
Sbjct: 425 LMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEG 484

Query: 556 VMPQPDTFAKLMRGL 570
           + P    ++ +++GL
Sbjct: 485 LKPDVVAYSSMIKGL 499



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 190/428 (44%), Gaps = 42/428 (9%)

Query: 159 ALMEEMRKEKPQL----ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           ++  ++ K +PQ     +    F  L+  +A++R      +VLD M + G    E +F  
Sbjct: 46  SISPQIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFIL 105

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           +  A  K     EA   F  M                  CK+                  
Sbjct: 106 IFKACGKAHLPGEAVNFFHRMANDLH-------------CKQ------------------ 134

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEM---RRKGCDPNANSYTVLIQALCRMEKMEE 331
              +  +N++L+   Q G  + AF+    +     KG  PN  +Y ++I+ALC++ +++ 
Sbjct: 135 --TVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDR 192

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A   F EM    C  DV TY+TL++G CK R++D    +LD M   G LPN +T+  ++ 
Sbjct: 193 AVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLID 252

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K  +L    +L+  M   GCVP+   YN +I   C  G+L +A+++  +M ++   P
Sbjct: 253 ALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVP 312

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  +++G + Q    +       M  RG   A +Y    +L++ L +  K E A  
Sbjct: 313 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ-KANEY-IYSSLISGLFKEGKSENAVR 370

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           +W  +  KGC+ NV  +  +I  L  +    EA     +M+    +P   T++ LM+G  
Sbjct: 371 LWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFF 430

Query: 572 KLYNRQIA 579
           K  + Q A
Sbjct: 431 KKGDSQKA 438



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 156/332 (46%), Gaps = 29/332 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  +I  L K R+      ++  M +E+ Q     ++  L+         +
Sbjct: 312 PNQV----TYGTIINGLVKQRRAEDGVHILMSM-EERGQKANEYIYSSLISGLFKEGKSE 366

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+ +  EM + GC+P+  V+G  +D LC++    EA  +  EM  + F P+   ++SL+
Sbjct: 367 NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLM 426

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+ K+G   +A  V  +M       ++V  + LL+G  + G++ +A  +   M  +G  
Sbjct: 427 KGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLK 486

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEME--RSGCEADVVTYTTLISGFCKSRKIDRCY 368
           P+  +Y+ +I+ LC +  +++  + F EM+        DVVTY  L +  C+   + R  
Sbjct: 487 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAI 546

Query: 369 EILDSMIQRGILPNQLT---YLH-----IMLAHEKKEELEE-CVELMGEMRKIGCV---- 415
           ++L+SM+  G  P+ LT   +L      I    + +  L+E  V L+   RK+  +    
Sbjct: 547 DLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVE 606

Query: 416 --------PDVSNYNVVIRLACKLGELKEAVN 439
                   P+ S ++ VI+  CK   ++E ++
Sbjct: 607 EMLLRFLPPEPSTWSRVIQRTCKPKRIRETID 638



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 8/211 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V    VY A I  L +  K      +++EM   K  L     +  LM+ F      
Sbjct: 381 KPNVV----VYGAFIDGLCRDEKPDEAEDILQEML-SKGFLPNAFTYSSLMKGFFKKGDS 435

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSL 249
           +KAI V  EM       +      LL+ LC++  ++EA  ++  M  E  KP +  ++S+
Sbjct: 436 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 495

Query: 250 LYGWCKEGKLVEAKYVLVQMK--DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           + G C  G + +   +  +M+  +    PD+V YN L +   +   +T A +LL  M  +
Sbjct: 496 IKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE 555

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           GCDP++ +  + ++ L       +  R F++
Sbjct: 556 GCDPDSLTCNIFLETLRERINPPQDGRLFLD 586



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 94/239 (39%), Gaps = 37/239 (15%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T+  LI  +  SR+    +++LD M + G +  +  ++ I  A  K     E V     M
Sbjct: 67  TFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRM 126

Query: 410 -RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
              + C   V ++N V+ +  + G+   A                  F + V G   +G 
Sbjct: 127 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAF----------------KFYLHVFGANSKG- 169

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
                              P   T   ++ +L +  +++ A D +  +  K C  +V+ +
Sbjct: 170 -----------------FQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTY 212

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +  ++ L     V EA  + LD M A+  +P P TF  L+  L K  +   AA++ + +
Sbjct: 213 STLMNGLCKERRVDEAV-FLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNM 270


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 187/356 (52%), Gaps = 3/356 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +K+A++VLD   +  C PD      L+DA CK S V +A KLF+EMR +  KP +  +  
Sbjct: 187 LKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNV 246

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+CKEG+L EA   L ++   G + D++ +N +L      G+  DA +LL  M RKG
Sbjct: 247 LIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKG 306

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  ++ +LI  LC+   + +A      M + G   +  ++  LI GFC  + IDR  
Sbjct: 307 CFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAI 366

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E L+ M+ RG  P+ +TY  ++ A  K  ++++ V ++ ++   GC P + +YN VI   
Sbjct: 367 EHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGL 426

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K+G+ + AV +  EM    L P   +   +V G   +G + EA ++F  + G G+   P
Sbjct: 427 LKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGI--KP 484

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                 +++  L +AQ+  +A D    +V  GC+    ++T  I  +   G  +EA
Sbjct: 485 NAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEA 540



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 171/377 (45%), Gaps = 6/377 (1%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCK 255
           L+ M   G  PD      L+   CK    K A ++   + E         +  L+  +CK
Sbjct: 92  LEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCK 151

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++ EA  VL     A   P+   Y+ +L      GK+  A ++L    +  C P+  +
Sbjct: 152 SGEIEEALRVLDHTSVA---PNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVT 208

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
            TVLI A C+   + +A + F EM   GC+ DVVTY  LI GFCK  ++D     L  + 
Sbjct: 209 CTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLP 268

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             G   + +++  I+ +        + ++L+  M + GC P V  +N++I   C+ G L 
Sbjct: 269 SYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLG 328

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+NV   M     +P + SF  ++ GF  +  +  A E+ + MV RG    P   T   
Sbjct: 329 KALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCY--PDIVTYNI 386

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LL +L +  KV+ A  + S + +KGC  ++ ++   I  L   G  + A     +M    
Sbjct: 387 LLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKG 446

Query: 556 VMPQPDTFAKLMRGLKK 572
           + P   T   ++ GL +
Sbjct: 447 LKPDLITCTSVVGGLSR 463



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 167/346 (48%), Gaps = 6/346 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            LI +  K    G    L  EMR +  KP ++T   + +L++ F     + +AI  L ++
Sbjct: 211 VLIDATCKESGVGQAMKLFNEMRGKGCKPDVVT---YNVLIKGFCKEGRLDEAIIFLKKL 267

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
           P YGC+ D      +L +LC      +A KL   M R+   PS+  F  L+   C++G L
Sbjct: 268 PSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLL 327

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  VL  M   G  P+   +N L+ G+     +  A E L+ M  +GC P+  +Y +L
Sbjct: 328 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNIL 387

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+  K+++A     ++   GC   +++Y T+I G  K  K +   E+L+ M  +G+
Sbjct: 388 LTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 447

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +T   ++    ++ ++ E ++    ++  G  P+   YN ++   CK  +   A++
Sbjct: 448 KPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAID 507

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              +M A    P   S+  ++ G   +G   EA +   E+  RGL+
Sbjct: 508 FLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLV 553



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 184/426 (43%), Gaps = 39/426 (9%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+R F      K A  ++  + + G   D   +  L++A CK+  ++EA ++ D      
Sbjct: 110 LIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLD--HTSV 167

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P+   + ++L   C  GKL +A  VL +   +   PD+V    L+    +   +  A +
Sbjct: 168 APNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMK 227

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEE---------------------------- 331
           L  EMR KGC P+  +Y VLI+  C+  +++E                            
Sbjct: 228 LFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLC 287

Query: 332 -------ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
                  A +    M R GC   VVT+  LI+  C+   + +   +L+ M + G  PN  
Sbjct: 288 SGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSR 347

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           ++  ++     ++ ++  +E +  M   GC PD+  YN+++   CK G++ +AV + +++
Sbjct: 348 SFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQL 407

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
            +   SP   S+  ++ G L  G    A E  +EM  +GL   P   T  +++  L R  
Sbjct: 408 SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL--KPDLITCTSVVGGLSREG 465

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           KV  A   +  +   G + N + +   +  L        A  + +DM+     P   ++ 
Sbjct: 466 KVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYT 525

Query: 565 KLMRGL 570
            L++G+
Sbjct: 526 TLIKGI 531



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 161/367 (43%), Gaps = 40/367 (10%)

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           + G+L E    L  M + G  PD+V    L+  + ++G+  +A  ++  +   G   +AN
Sbjct: 81  RNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDAN 140

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           SY VLI A C+  ++EEA R    ++ +    +  TY  ++   C   K+ +  ++LD  
Sbjct: 141 SYNVLINAYCKSGEIEEALRV---LDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQ 197

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           +Q    P+ +T   ++ A  K+  + + ++L  EMR  GC PDV  YNV+I+  CK G L
Sbjct: 198 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRL 257

Query: 435 KEAVNVWNE--------------------------MEAASL---------SPGTDSFVVM 459
            EA+    +                          M+A  L          P   +F ++
Sbjct: 258 DEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNIL 317

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           ++    +G L +A    + M   G    P   +   L+      + ++ A +    +V++
Sbjct: 318 INFLCQKGLLGKALNVLEMMPKHG--HTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSR 375

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
           GC  ++  + I + +L  +G V +A      +      P   ++  ++ GL K+   ++A
Sbjct: 376 GCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELA 435

Query: 580 AEITEKV 586
            E+ E++
Sbjct: 436 VELLEEM 442



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 2/249 (0%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S   +  LI  L +    G    ++E M K       +  F  L++ F + + + +AIE 
Sbjct: 310 SVVTFNILINFLCQKGLLGKALNVLEMMPKHG-HTPNSRSFNPLIQGFCNRKGIDRAIEH 368

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           L+ M   GC PD   +  LL ALCK+  V +A  +  ++  +   PSL  + +++ G  K
Sbjct: 369 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLK 428

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            GK   A  +L +M   G +PD++   +++ G ++ GK+ +A +    ++  G  PNA  
Sbjct: 429 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFI 488

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  ++  LC+ ++   A    V+M  +GC+    +YTTLI G       +   ++ + + 
Sbjct: 489 YNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELY 548

Query: 376 QRGILPNQL 384
            RG++   L
Sbjct: 549 SRGLVKKSL 557



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 55/295 (18%)

Query: 320 IQALCRM---EKMEEANRAFVEMERSGCEADVVTYTTLI--------------------- 355
           I  LCR+    ++EE +R    M   G   DVV  T LI                     
Sbjct: 73  IHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEE 132

Query: 356 --------------SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
                         + +CKS +I+    +LD      + PN  TY  ++ +   + +L++
Sbjct: 133 SGAVIDANSYNVLINAYCKSGEIEEALRVLD---HTSVAPNAATYDAVLCSLCDRGKLKQ 189

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            ++++    +  C PDV    V+I   CK   + +A+ ++NEM      P   ++ V++ 
Sbjct: 190 AMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIK 249

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYG------TLKALLNSLLRAQKVEMAKDVWSC 515
           GF  +G L EA  + K++        P YG      +   +L SL    +   A  + + 
Sbjct: 250 GFCKEGRLDEAIIFLKKL--------PSYGCQSDVISHNMILRSLCSGGRWMDAMKLLAT 301

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++ KGC  +V  + I I+ L   G + +A +    M      P   +F  L++G 
Sbjct: 302 MLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGF 356


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 17/365 (4%)

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW---ALMEEMRKE 167
           +N+ GD  +    +  W    PN V     Y  LI    KM + G ++   A+++EM + 
Sbjct: 246 LNKAGDVVDDMKVWGFW----PNVV----TYNTLIDGYCKMGRVGKMYKADAILKEMVEN 297

Query: 168 K--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K  P  +T   F +L+  F     +  A++V +EM   G +P    +  L++ LC    +
Sbjct: 298 KVSPNSVT---FNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKL 354

Query: 226 KEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            EA  L DEM     KP++  + +L+ G+CK+  L EA+ +   +   G  P+++ +N L
Sbjct: 355 NEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTL 414

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           L GY + GKM +AF L K M  KG  PNA++Y  LI   CR  KMEE      EM+  G 
Sbjct: 415 LHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGV 474

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           +AD VTY  LIS +C+ ++  +   ++D M+ +G+ P+ LTY  ++  +  +  L   + 
Sbjct: 475 KADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALN 534

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  +M K G   +V  YNV+I+  C+ G+L++A  + NEM    L P   ++ ++    +
Sbjct: 535 LRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMM 594

Query: 465 GQGCL 469
            +G L
Sbjct: 595 EKGFL 599



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 201/406 (49%), Gaps = 11/406 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           L+ +L K  +FG V  + +EM  RK  P LIT   F  ++        + KA +V+D+M 
Sbjct: 201 LLSALVKENEFGGVEFVYKEMIRRKISPNLIT---FNTVINGLCKVGKLNKAGDVVDDMK 257

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKE---AAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            +G  P+   +  L+D  CK   V +   A  +  EM E +  P+   F  L+ G+CK+ 
Sbjct: 258 VWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDE 317

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  V  +M+  G +P +V YN+L++G    GK+ +A  LL EM      PN  +Y 
Sbjct: 318 NLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYN 377

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+ + +EEA   F  + + G   +V+T+ TL+ G+CK  K++  + +   M+++
Sbjct: 378 ALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEK 437

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LPN  TY  +++   ++ ++EE   L+ EM+  G   D   YN++I   C+  E K+A
Sbjct: 438 GFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKA 497

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + +EM    L P   ++ ++++G+  +G L  A    K+M   G  +     T   L+
Sbjct: 498 ARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWA--NVVTYNVLI 555

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               R  K+E A  + + ++ KG   N   + I    +   G + +
Sbjct: 556 QGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPD 601



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 202/451 (44%), Gaps = 24/451 (5%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           RY+ W+ ++ N  +S ++   L+  L+  + +  + ++++   K +     + +F  L  
Sbjct: 92  RYFNWSRRELNVNYSIELICRLLNLLANAKHYPKIRSILDSFVKGETNCSISLIFHSL-- 149

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKP 241
              S +    +I                +   L+ A  +NS      + F    + R+K 
Sbjct: 150 SVCSGQFCANSI----------------IADMLVLAYVENSKTVLGLEAFKRAGDYRYKL 193

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           S+     LL    KE +    ++V  +M      P+++ +N +++G  ++GK+  A +++
Sbjct: 194 SVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVV 253

Query: 302 KEMRRKGCDPNANSYTVLIQALCRM---EKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            +M+  G  PN  +Y  LI   C+M    KM +A+    EM  +    + VT+  LI GF
Sbjct: 254 DDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGF 313

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   +    ++ + M  +G+ P  +TY  ++     + +L E   L+ EM      P+V
Sbjct: 314 CKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNV 373

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   CK   L+EA  +++ +    L+P   +F  ++HG+   G + EA    K 
Sbjct: 374 ITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKV 433

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ +G L  P   T   L+    R  K+E  K++ + +  +G + +   + I I +    
Sbjct: 434 MLEKGFL--PNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEK 491

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
              K+A     +M+D  + P   T+  L+ G
Sbjct: 492 KEPKKAARLIDEMLDKGLKPSHLTYNILLNG 522



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 175/385 (45%), Gaps = 8/385 (2%)

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  + +  K V       +  D  ++  ++  N LLS   +  +      + KEM R+ 
Sbjct: 166 LVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRK 225

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  ++  +I  LC++ K+ +A     +M+  G   +VVTY TLI G+CK  ++ + Y
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMY 285

Query: 369 E---ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +   IL  M++  + PN +T+  ++    K E L   +++  EM+  G  P V  YN ++
Sbjct: 286 KADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV 345

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C  G+L EA  + +EM +++L P   ++  +++G+  +  L EA E F  +  +GL 
Sbjct: 346 NGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL- 404

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T   LL+   +  K+E A  +   ++ KG   N   +   I      G ++E  
Sbjct: 405 -TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVK 463

Query: 546 SYCLDMMDADVMPQPDTFAKLMRG-LKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
           +   +M    V     T+  L+    +K   ++ A  I E + K      +T+ +     
Sbjct: 464 NLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNIL--LN 521

Query: 605 ERDLKEKAKKQVDGRKRRARQRRWG 629
              ++   +  ++ RK+  ++ RW 
Sbjct: 522 GYCMEGNLRAALNLRKQMEKEGRWA 546


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 203/413 (49%), Gaps = 18/413 (4%)

Query: 169 PQLITTEVFVI-LMRRFASARMVKKAIEV---LDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           P L T  +F+  L R+        K +E    L +M   G EPD+F +  ++    K   
Sbjct: 249 PNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGK 308

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           +++A+++  + + + F P    + SL+ G C++G +  A  +  +    G +P IV+YN 
Sbjct: 309 IQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNT 368

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ G +Q G +  A +L+ +M ++G  P+  +Y ++I  LC+M  + +AN         G
Sbjct: 369 LIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKG 428

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              D+ T+ TLI G+CK  K+D    ILDSM   G+ P+ +TY  I+    K  + E+ +
Sbjct: 429 YLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVM 488

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           E    + + GC+P++  YN++I   CK  ++ EA+++  E+    L P   SF  ++ GF
Sbjct: 489 ETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGF 548

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQY------GTLKALLNSLLRAQKVEMAKDVWSCIV 517
              G L EA + F+ M         QY       T   ++N+      ++MA+ ++  + 
Sbjct: 549 CNNGDLDEAYQLFRRM-------EQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMG 601

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            KGC+ + Y + + I      G+V     + L  ++   +P   TF +++  L
Sbjct: 602 DKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCL 654



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 219/519 (42%), Gaps = 80/519 (15%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K+  + H++  Y+ +I+ L    +F A+  ++ EMR      +   V+V  MR +     
Sbjct: 32  KEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYVSAMRNYGRKGK 91

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTS 248
           V++A++V + M  Y CEP  F +  +++ L +     +A K++  M+ E   P +  FT 
Sbjct: 92  VQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTI 151

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR-- 306
            +  +C+  + + A  +L  M   G E + VVY  ++SG+ +     +A+EL  +M R  
Sbjct: 152 RIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLG 211

Query: 307 ---------------------------------KGCDPNANSYTVLIQALCRMEKMEEAN 333
                                             G  PN  ++ + IQ LCR   +E AN
Sbjct: 212 IFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGAN 271

Query: 334 RAFVEME-------RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
              VE E         G E D  TY T+I G+ K  KI     IL     +G +P++ TY
Sbjct: 272 SKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTY 331

Query: 387 LHIMLAHEKKEELE-----------------------------------ECVELMGEMRK 411
             +++   +  +++                                   + ++LM +M K
Sbjct: 332 CSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSK 391

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  PD+  YN+VI   CK+G + +A N+ N   A    P   +F  ++ G+  +  +  
Sbjct: 392 EGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDN 451

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A      M   G+   P   T  ++LN L +A K E   + +  I+ KGC  N+  + I 
Sbjct: 452 AIGILDSMWSHGV--TPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNIL 509

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           I SL     V EA     ++ +  ++P P +F  ++ G 
Sbjct: 510 IESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGF 548



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 179/361 (49%), Gaps = 7/361 (1%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFAS 186
           +K   +V     Y +LI  + +        AL EE   +  KP ++   ++  L++  + 
Sbjct: 319 AKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIV---LYNTLIKGLSQ 375

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRH 245
             +V KA++++++M K G  PD + +  +++ LCK   V +A  L +  + + + P +  
Sbjct: 376 QGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFT 435

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F +L+ G+CK  K+  A  +L  M   G  PD++ YN++L+G  +  K  D  E  K + 
Sbjct: 436 FNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIM 495

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KGC PN  +Y +LI++LC+  K+ EA     E+   G   D V++ T+ISGFC +  +D
Sbjct: 496 EKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLD 555

Query: 366 RCYEILDSMIQRGILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
             Y++   M Q+  + + +   +IM+ A  +K +++   +L  EM   GC PD   Y V+
Sbjct: 556 EAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVM 615

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK+G +    +   +       P   +F  +++    Q  + EA      MV  G+
Sbjct: 616 IDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGV 675

Query: 485 L 485
           +
Sbjct: 676 V 676



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 166/349 (47%), Gaps = 11/349 (3%)

Query: 234 EMRERFKPSLRH--FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           EMR     SL    + S +  + ++GK+ EA  V  +M     EP I  YN +++   + 
Sbjct: 65  EMRLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEY 124

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G    A ++   M+ +G  P+  ++T+ I++ CR ++   A R    M   GCE + V Y
Sbjct: 125 GYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVY 184

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            T+ISGF +       YE+ + M++ GI P+  T+  +M    KK  L+E  +L+ ++ K
Sbjct: 185 CTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLK 244

Query: 412 IGCVPDVSNYNVVIRLACKLGELK-------EAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
            G  P++  +N+ I+  C+ G L+       EA N  ++M    L P   ++  +++G+ 
Sbjct: 245 NGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYS 304

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             G + +A    K+   +G +  P   T  +L+  + +   ++ A  ++   + KG + +
Sbjct: 305 KVGKIQDASRILKDAKFKGFV--PDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPS 362

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +  +   I  L   G V +A     DM    + P   T+  ++ GL K+
Sbjct: 363 IVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKM 411



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 135/317 (42%), Gaps = 42/317 (13%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LIK LS+         LM +M KE   P + T   + +++        V  A  +L
Sbjct: 365 LYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWT---YNLVINGLCKMGCVSDANNLL 421

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           +     G  PD F F  L+D  CK   +  A  + D M      P +  + S+L G CK 
Sbjct: 422 NAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKA 481

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            K  +       + + G  P+I+ YN L+    +  K+T+A +LL+E+R +G  P+  S+
Sbjct: 482 AKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSF 541

Query: 317 TVLIQALC-------------RMEK-----------------------MEEANRAFVEME 340
             +I   C             RME+                       M+ A + F EM 
Sbjct: 542 GTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMG 601

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             GC+ D  TY  +I GFCK   ++  Y+ L   I+ G +P+  T+  ++     +  + 
Sbjct: 602 DKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVH 661

Query: 401 ECVELMGEMRKIGCVPD 417
           E V ++  M + G VP+
Sbjct: 662 EAVGIVHLMVRTGVVPE 678



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 106/228 (46%), Gaps = 8/228 (3%)

Query: 126 MWA-SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           MW+    P+ +     Y +++  L K  K   V    + M  EK  L     + IL+   
Sbjct: 459 MWSHGVTPDVI----TYNSILNGLCKAAKPEDVMETFK-MIMEKGCLPNIITYNILIESL 513

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS 242
             AR V +A+++L+E+   G  PD   FG ++   C N  + EA +LF  M ++++   +
Sbjct: 514 CKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHT 573

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +  ++  + ++  +  A+ +  +M D G +PD   Y  ++ G+ ++G +   ++ L 
Sbjct: 574 VATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLL 633

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           +    G  P+  ++  +I  LC   ++ EA      M R+G   + V 
Sbjct: 634 KEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV 681



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 3/170 (1%)

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G+++EAV+V+  M+  +  P   S+  +++  +  G   +A + +  M   G+  AP   
Sbjct: 90  GKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGI--APDVC 147

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T    + S  R ++   A  + + + ++GCELN   +   I   +   +  EA      M
Sbjct: 148 TFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKM 207

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA-ERQITFKMY 600
           +   + P   TF KLM  L K  + Q   ++  KV K        TF ++
Sbjct: 208 LRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 210/422 (49%), Gaps = 17/422 (4%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL++ F S   +  A+    ++ K G  P    F  LL  LC    V EA  LF +M 
Sbjct: 18  FNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM- 76

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
              KP++  FT+L+ G C+EG++VEA  +L +M + G +P+ + Y  ++ G  +MG    
Sbjct: 77  --CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 134

Query: 297 AFELLKEMRR-KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           A  LL++M       P+   Y+ +I  L +  +  +A   F+EM+  G   D+VTY+ +I
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +GFC S K      +L  M+ R I P+ +T+  ++ A  K+ +L    +L+ EM   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-----------SLSPGTDSFVVMVHGFL 464
           P+V   N ++   C  G+LK+A+ ++  M+ +            + P   ++ +++ G +
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G  +EA E ++EM  RG++  P   T  +++N L +  +++ A  ++  + +K    N
Sbjct: 315 NEGKFLEAEELYEEMPHRGIV--PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +  +   I      G V +      +M    ++    T+  L+RG +K+ N   + +I +
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQ 432

Query: 585 KV 586
           ++
Sbjct: 433 EM 434



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 22/348 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWAL---MEEMRKEKPQLITTEVFVILMRRFASA 187
           QPN +     Y  ++  + KM    +   L   MEE+   KP ++   ++  ++      
Sbjct: 113 QPNQI----TYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVV---IYSAIIDGLWKD 165

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
                A  +  EM   G  PD   + C+++  C +    EA +L  EM  R   P +  F
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           + L+    KEG L  A+ +L +M  +G  P++V  N LL G    GK+ DA E+ K M++
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285

Query: 307 -----------KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
                       G +P+  +Y +LI  L    K  EA   + EM   G   D VTY+++I
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G CK  ++D   ++ DSM  +   PN +T+  ++  + K   +++ +EL  EM + G V
Sbjct: 346 NGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIV 405

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +   Y  +IR   K+G +  +++++ EM ++ + P T +   M+ G 
Sbjct: 406 ANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGL 453



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 179/390 (45%), Gaps = 53/390 (13%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T   F  LM        V +A+ +LD M + G +P++  +G ++D +CK      
Sbjct: 78  KPNVVT---FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 134

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E    KP +  +++++ G  K+G+  +A+ + ++M+D G  PDIV Y+ ++
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 286 SGYAQMGK-----------------------------------MTDAFELLKEMRRKGCD 310
           +G+   GK                                   +  A +LL+EM   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFC 359
           PN  +   L+  LC   K+++A   F  M++S           G E DV TY  LISG  
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
              K     E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P++ 
Sbjct: 315 NEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIV 374

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N +I   CK G + + + ++ EM    +     +++ ++ GF   G +  + + F+EM
Sbjct: 375 TFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  G+   P   T++ +L  L   ++++ A
Sbjct: 435 ISSGVY--PDTITIRNMLTGLWSKEELKRA 462



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 158/323 (48%), Gaps = 19/323 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y A+I  L K  +      L  EM+ +   P ++T   +  ++  F S+    +A  +L
Sbjct: 154 IYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT---YSCMINGFCSSGKWSEAQRLL 210

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            EM      PD   F  L++AL K   +  A  L  EM      P++    +LL G C  
Sbjct: 211 QEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDS 270

Query: 257 GKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A EL +EM 
Sbjct: 271 GKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 330

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  P+  +Y+ +I  LC+  +++EA + F  M       ++VT+ TLI+G+CK+  +D
Sbjct: 331 HRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVD 390

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-VSNYNVV 424
              E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD ++  N++
Sbjct: 391 DGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNML 450

Query: 425 IRLACKLGELKEAVNVWNEMEAA 447
             L  K  ELK A+ +  E++ +
Sbjct: 451 TGLWSK-EELKRALAMLEELQMS 472



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 130/299 (43%), Gaps = 45/299 (15%)

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE----- 369
           S+ +LI+  C   K+  A   F ++ + G    +VT+ TL+ G C   ++    +     
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 370 --------------------------ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
                                     +LD M++ G+ PNQ+TY  I+    K  +    +
Sbjct: 77  CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 136

Query: 404 ELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            L+ +M ++  + PDV  Y+ +I    K G   +A N++ EM+   + P   ++  M++G
Sbjct: 137 NLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F   G   EA    +EM+ R +  +P   T   L+N+L++   +  A+D+   +++ G  
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKI--SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 523 LNVYAWTIWIHSLFSNGHVKEAC----SYCLDMMDAD-------VMPQPDTFAKLMRGL 570
            NV      +  L  +G +K+A     +    MMD D       V P   T+  L+ GL
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D+ ++N++I+  C   +L  A++ + ++      P   +F  ++HG   +  + EA + F
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            +M        P   T   L+N L R  +V  A  +   +V  G + N   +   +  + 
Sbjct: 74  HQM------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 537 SNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGLKK 572
             G    A +    M + + + P    ++ ++ GL K
Sbjct: 128 KMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWK 164


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 220/447 (49%), Gaps = 19/447 (4%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V++A  +L +M   G  PD   +G ++   C+   + +  KL DE++ +  KP    + +
Sbjct: 258 VREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNN 317

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CK G++VEA+ +L  M+  G  PD VVY  ++SG+ ++G ++ A +L  EMRRK 
Sbjct: 318 IILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKK 377

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +YT +I  +C+  KM EA   F EM   G E D VTYT LI G+CK+ ++   +
Sbjct: 378 IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAF 437

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + + M+Q+G+ PN +TY  +     K  E++   EL+ EM + G  P+V  YN ++   
Sbjct: 438 SVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGL 497

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK+G +++ V +  EM+ A   P T ++  ++  +   G + +A E  + M+ + L   P
Sbjct: 498 CKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL--QP 555

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   L+N    +  +E  + +   ++ KG   N   +   +       +++      
Sbjct: 556 TLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIY 615

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIA----AEITEKVRKMAAER--QITFKMYKR 602
             M D  VMP  +T+  L++G  K  N + A     E+ EK   + A     +    YKR
Sbjct: 616 KAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKR 675

Query: 603 RGERDLKEKAKKQVDGRKRRARQRRWG 629
                     KK V+ RK     R+ G
Sbjct: 676 ----------KKFVEARKLFEEMRKHG 692



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 188/351 (53%), Gaps = 8/351 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLIT-TEVFVILMRRFASARMVKKAIEV 196
           VY  +I    K+    A   L +EMR++K  P ++T T V   + +   S +MV+ A E+
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICK---SGKMVE-AREM 404

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
            +EM   G EPDE  +  L+D  CK   +KEA  + ++M ++   P++  +T+L  G CK
Sbjct: 405 FNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCK 464

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++  A  +L +M   G +P++  YN +++G  ++G +    +L++EM   G  P+  +
Sbjct: 465 NGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTIT 524

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           YT L+ A C+M +M +A+     M     +  +VT+  L++GFC S  ++    +++ M+
Sbjct: 525 YTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWML 584

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           ++GI+PN  T+  +M  +  K  +    E+   M   G +PD + YN++I+  CK   +K
Sbjct: 585 EKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMK 644

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           EA  +  EM     S    ++  ++ GF  +   +EA + F+EM   GL++
Sbjct: 645 EAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVA 695



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 169/352 (48%), Gaps = 3/352 (0%)

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C    +K A K+F+E  E     +      +L+  C+ GK+ EA  +LVQM D G  PD+
Sbjct: 218 CNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDV 277

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V Y  ++SGY ++G++    +L+ E++ KG  P+   Y  +I  LC+  ++ EA +    
Sbjct: 278 VSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRG 337

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M + G   D V YTT+ISGFCK   +    ++ D M ++ I+P+ +TY  ++    K  +
Sbjct: 338 MRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGK 397

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           + E  E+  EM   G  PD   Y  +I   CK GE+KEA +V N+M    L+P   ++  
Sbjct: 398 MVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTA 457

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           +  G    G +  A E   EM  +GL   P   T   ++N L +   +E    +   +  
Sbjct: 458 LADGLCKNGEIDVANELLHEMSRKGL--QPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDL 515

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            G   +   +T  + +    G + +A      M++  + P   TF  LM G 
Sbjct: 516 AGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGF 567


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 197/383 (51%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A ++ +R+   +L+   V  +  ++      ++V +A ++  
Sbjct: 180 YGTLINGLCKV---GQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 236

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+   C    +K+A  LF++M  E   P++  F  L+ G+CKE 
Sbjct: 237 EMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKER 296

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L EAK VL  M   G +PD+  YN+L+  Y  + ++  A  +   + ++G +PN +SY+
Sbjct: 297 RLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYS 356

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++K++EA   F EM  +    DVVTY +LI G CK  KI    +++D M  R
Sbjct: 357 IMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 416

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+  +++TY  I+ A  K  ++++ + L+ +M+  G  PD+  Y  ++   CK G L++A
Sbjct: 417 GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDA 476

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+ ++         + +  M+ GF   G   E+ +   +M   G +  P   T + ++
Sbjct: 477 RIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCI--PNAVTYEIII 534

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            SL    + + A+ +   ++T+G
Sbjct: 535 CSLFDKDENDKAEKLLREMITRG 557



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 209/427 (48%), Gaps = 8/427 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +   LI   S++ +    ++++ ++ K   +P +IT      L++       + +A++  
Sbjct: 109 ILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVIT---LTTLIKGLCLKGQIHQALQFH 165

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
           D++   G   ++  +G L++ LCK      A +L   +  +  +P++  + +++   CK 
Sbjct: 166 DKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV 225

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + EA  +  +M   G  PD+V YN L+SG+  +GKM DA +L  +M  +  +PN  ++
Sbjct: 226 KLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTF 285

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+   C+  +++EA      M + G + DV TY +L+  +C  +++++   I +++ Q
Sbjct: 286 NILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQ 345

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RG+ PN  +Y  ++    K ++++E + L  EM     +PDV  YN +I   CKLG++  
Sbjct: 346 RGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISY 405

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ + +EM    +     ++  ++        + +A     +M   G+   P   T   L
Sbjct: 406 ALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI--QPDICTYTTL 463

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++ L +  ++E A+ V+  ++ KG  L+V  +T  I    S+G   E+      M +   
Sbjct: 464 VDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGC 523

Query: 557 MPQPDTF 563
           +P   T+
Sbjct: 524 IPNAVTY 530



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 169/338 (50%), Gaps = 2/338 (0%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           ++  ++P++   T+L+ G C +G++ +A     ++   GF  + V Y  L++G  ++G+ 
Sbjct: 134 LKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQT 193

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           + A +LL+ +  K   PN   Y  +I ++C+++ + EA   + EM   G   DVVTY  L
Sbjct: 194 SAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNAL 253

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ISGFC   K+    ++ + MI   I PN  T+  ++    K+  L+E   ++  M K G 
Sbjct: 254 ISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGI 313

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PDV  YN ++   C + E+ +A +++N +    ++P   S+ +M+HGF     + EA  
Sbjct: 314 KPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMN 373

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            FKEM    ++  P   T  +L++ L +  K+  A  +   +  +G   +   +   + +
Sbjct: 374 LFKEMHCNNII--PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDA 431

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           L  N  V +A +    M D  + P   T+  L+ GL K
Sbjct: 432 LCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCK 469



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 178/348 (51%), Gaps = 2/348 (0%)

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KPS+  F  +L    K         +  QM+  G   D+V+ + L++ ++Q+G+   +F 
Sbjct: 69  KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFS 128

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +L ++ + G +PN  + T LI+ LC   ++ +A +   ++   G   + V+Y TLI+G C
Sbjct: 129 VLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLC 188

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  +     ++L  +  + + PN + Y  I+ +  K + + E  +L  EM   G  PDV 
Sbjct: 189 KVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVV 248

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN +I   C +G++K+A +++N+M   +++P   +F ++V GF  +  L EA      M
Sbjct: 249 TYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMM 308

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           + +G+   P   T  +L++     ++V  AK +++ I  +G   N+++++I IH      
Sbjct: 309 MKQGI--KPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIK 366

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            V EA +   +M   +++P   T+  L+ GL KL     A ++ +++ 
Sbjct: 367 KVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMH 414



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 121/268 (45%), Gaps = 10/268 (3%)

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           + +K   P+   +  ++ +L +            +ME +G  +D+V  + LI+ F +  +
Sbjct: 63  LHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQ 122

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
               + +L  +++ G  PN +T   ++     K ++ + ++   ++  +G   +  +Y  
Sbjct: 123 NPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGT 182

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI----EACEYFKEM 479
           +I   CK+G+   A+ +   ++   + P     VVM +  +   C +    EA + + EM
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPN----VVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V +G+  +P   T  AL++      K++ A D+++ ++ +    NVY + I +       
Sbjct: 239 VSKGI--SPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKER 296

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLM 567
            +KEA +    MM   + P   T+  LM
Sbjct: 297 RLKEAKNVLAMMMKQGIKPDVFTYNSLM 324


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 216/469 (46%), Gaps = 42/469 (8%)

Query: 119 NLGYRYYMWASK-QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE-V 176
           +L  + +++A K  P + H+YD Y +++  LS+ R F  V +LM ++R   P +   E +
Sbjct: 61  DLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENL 120

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F+ L+R +  A   + ++ +   +P +G +        LL+ L +N        +F   +
Sbjct: 121 FIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSK 180

Query: 237 ERFKPSLRHFTS--LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           E F  +   FT   L+   CK+  +  A  VL ++   G  P++V Y  +L GY   G M
Sbjct: 181 ESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDM 240

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  +L+EM  +G  P+A +YTVL+   C++ +  EA     +ME++  E + VTY  +
Sbjct: 241 ESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVM 300

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I   CK +K      + D M+ R  +P+      ++ A  +  +++E   L  +M K  C
Sbjct: 301 IRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNC 360

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PD +  + +I   CK G + EA  +++E +  S+ P   ++  ++ G   +G L EA  
Sbjct: 361 MPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSI-PSLLTYNTLIAGMCEKGELTEA-- 417

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
                 GR                             +W  +  + C+ N + + + I  
Sbjct: 418 ------GR-----------------------------LWDDMFERKCKPNAFTYNVLIEG 442

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           L  NG+VKE      +M+++   P   TF  L  GL+KL   + A +I 
Sbjct: 443 LSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIV 491



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 163/326 (50%), Gaps = 8/326 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           L+K+L K     + + +++E+      P L+T   +  ++  + +   ++ A  VL+EM 
Sbjct: 195 LVKALCKKNDIESAYKVLDEIPAMGLVPNLVT---YTTILGGYVARGDMESAKRVLEEML 251

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLV 260
             G  PD   +  L+D  CK     EAA + D+M +   +P+   +  ++   CKE K  
Sbjct: 252 DRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 311

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA+ +  +M D  F PD  +   ++    +  K+ +A  L ++M +  C P+    + LI
Sbjct: 312 EARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLI 371

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             LC+  ++ EA + F E ++ G    ++TY TLI+G C+  ++     + D M +R   
Sbjct: 372 HWLCKEGRVSEARKLFDEFDK-GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCK 430

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN  TY  ++    K   ++E V ++ EM + GC P+ + + ++     KLG+ ++A+ +
Sbjct: 431 PNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKI 490

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQ 466
            + M   +     +S+ + ++ F+G+
Sbjct: 491 VS-MAVMNGKVDKESWELFLNKFVGE 515



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 5/241 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y  L+    K+ +F     +M++M  EK ++   EV + +++R     +   +A  + D
Sbjct: 261 TYTVLMDGYCKLGRFSEAATVMDDM--EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFD 318

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM      PD  +   ++DALC++  V EA  L+ +M +    P     ++L++  CKEG
Sbjct: 319 EMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEG 378

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+ +  +  D G  P ++ YN L++G  + G++T+A  L  +M  + C PNA +Y 
Sbjct: 379 RVSEARKLFDEF-DKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYN 437

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VLI+ L +   ++E  R   EM  SGC  +  T+  L  G  K  K +   +I+   +  
Sbjct: 438 VLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMN 497

Query: 378 G 378
           G
Sbjct: 498 G 498


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 215/443 (48%), Gaps = 8/443 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y ++I +L K +       ++  M K    +     +  ++  + S+   K
Sbjct: 232 PNVV----TYSSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVHGYCSSGQPK 286

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +AI  L +M   G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+  +G LVE   +L  M   G  P+  V++ L+  YA+ GK+  A  +  +MR++G +
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  +I  LC+  ++E+A R F +M         + Y +LI   C   K D+  E+
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M+ RGI  + + +  I+ +H K+  + E  +L   M +IG  PD+  Y+ +I   C 
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCL 526

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++ EA  +   M +  + P   ++  +++G+     + +A   F+EM   G+  +P  
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDI 584

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   +L  L + ++   AK+++  I   G +L +  + I +H L  N    EA     +
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 551 MMDADVMPQPDTFAKLMRGLKKL 573
           +   D+  +  TF  ++  L K+
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKV 667



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 197/404 (48%), Gaps = 13/404 (3%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + IL++        ++A+E+L  MP  G  C PD   +  +++   K   + +A   + E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R   P++  ++S++   CK   + +A  VL  M   G  P+   YN+++ GY   G+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A   LK+M   G +P+  +Y  L+  LC+  +  EA + F  M + G + ++ TY T
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+     +   + +LD M++ GI PN   +  ++ A+ K+ ++++ + +  +MR+ G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-- 471
             PD   Y  VI + CK G +++A+  + +M    LSPG   +  ++H      C+ +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL----CIFDKW 460

Query: 472 --ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + ++  ++
Sbjct: 461 DKAKELILEMLDRGICLDTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             I      G + EA      M+   + P   T+  L+ G  K+
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 44/332 (13%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF IL+  +A    V +A+ V  +M + G  PD   +G ++  LCK+  V++A + F++M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 236 -RERFKP------SLRH-----------------------------FTSLLYGWCKEGKL 259
             ER  P      SL H                             F S++   CKEG++
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +E++ +   M   G +PDI+ Y+ L+ GY   GKM +A +LL  M   G  P+  +Y  L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C++ +ME+A   F EME SG   D++TY  ++ G  ++R+     E+   + + G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----NYNVVIRLACKLGELK 435
                TY  I+    K    +E + +   +    C+ D+      +N++I    K+G   
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKVGRND 671

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EA +++  + A  L P   ++ +M    + QG
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 1/286 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA E++ EM   G   D   F  ++D+ CK   V E+ KLFD M R   KP +  +++L+
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  GK+ EA  +L  M   G +PD V YN L++GY ++ +M DA  L +EM   G  
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y +++Q L +  +   A   +V +  SG + ++ TY  ++ G CK+   D    +
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             ++    +     T+  ++ A  K    +E  +L   +   G VPDV  Y+++     +
Sbjct: 642 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 701

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            G L+E  +++  ME    +  +     +V   L +G +  A  Y 
Sbjct: 702 QGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 42/331 (12%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC----------- 324
           P++  Y  L+      G++   F  L  + +KG   +A ++T L++ LC           
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 325 ---RMEKM----------------------EEANRAFVEMERSG--CEADVVTYTTLISG 357
              RM ++                      +EA      M   G  C  DVV+YTT+I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           F K   +D+ Y     M+ RGILPN +TY  I+ A  K + +++ +E++  M K G +P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              YN ++   C  G+ KEA+    +M +  + P   ++  ++      G   EA + F 
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 478 EMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M  RGL   P+  T   LL     +   VEM   +   +V  G   N Y ++I I +  
Sbjct: 329 SMTKRGL--KPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             G V +A      M    + P   T+  ++
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 134/283 (47%), Gaps = 9/283 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE---ADVVTYT 352
           DA  +  E+ R+G   +       +  + R       +R +  M R+G +    ++ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSR-YNRMARAGADEVTPNLCTYG 95

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL-MGEMRK 411
            LI   C + ++D  +  L ++I++G   + + +  ++      +   + +++ +  M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCL 469
           +GC+P+V +YN++++  C     +EA+ +   M  +     P   S+  +++GF  +G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A   + EM+ RG+L  P   T  +++ +L +AQ ++ A +V + +V  G   N   + 
Sbjct: 216 DKAYGTYHEMLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +H   S+G  KEA  +   M    V P   T+  LM  L K
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 210/422 (49%), Gaps = 17/422 (4%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL++ F S   +  A+    ++ K G  P    F  LL  LC    V EA  LF +M 
Sbjct: 18  FNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM- 76

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
              KP++  FT+L+ G C+EG++VEA  +L +M + G +P+ + Y  ++ G  +MG    
Sbjct: 77  --CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 134

Query: 297 AFELLKEMRR-KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           A  LL++M       P+   Y+ +I  L +  +  +A   F+EM+  G   D+VTY+ +I
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +GFC S K      +L  M+ R I P+ +T+  ++ A  K+ +L    +L+ EM   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-----------SLSPGTDSFVVMVHGFL 464
           P+V   N ++   C  G+LK+A+ ++  M+ +            + P   ++ +++ G +
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G  +EA E ++EM  RG++  P   T  +++N L +  +++ A  ++  + +K    N
Sbjct: 315 NEGKFLEAEELYEEMPHRGIV--PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +  +   I      G V +      +M    ++    T+  L+RG +K+ N   + +I +
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQ 432

Query: 585 KV 586
           ++
Sbjct: 433 EM 434



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 22/348 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWAL---MEEMRKEKPQLITTEVFVILMRRFASA 187
           QPN +     Y  ++  + KM    +   L   MEE+   KP ++   ++  ++      
Sbjct: 113 QPNQI----TYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVV---IYSAIIDGLWKD 165

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
                A  +  EM   G  PD   + C+++  C +    EA +L  EM  R   P +  F
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           + L+    KEG L  A+ +L +M  +G  P++V  N LL G    GK+ DA E+ K M++
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285

Query: 307 -----------KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
                       G +P+  +Y +LI  L    K  EA   + EM   G   D VTY+++I
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G CK  ++D   ++ DSM  +   PN +T+  ++  + K   +++ +EL  EM + G V
Sbjct: 346 NGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIV 405

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +   Y  +IR   K+G +  +++++ EM ++ + P T +   M+ G 
Sbjct: 406 ANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGL 453



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 179/390 (45%), Gaps = 53/390 (13%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T   F  LM        V +A+ +LD M + G +P++  +G ++D +CK      
Sbjct: 78  KPNVVT---FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 134

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E    KP +  +++++ G  K+G+  +A+ + ++M+D G  PDIV Y+ ++
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 286 SGYAQMGK-----------------------------------MTDAFELLKEMRRKGCD 310
           +G+   GK                                   +  A +LL+EM   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFC 359
           PN  +   L+  LC   K+++A   F  M++S           G E DV TY  LISG  
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
              K     E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P++ 
Sbjct: 315 NEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIV 374

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N +I   CK G + + + ++ EM    +     +++ ++ GF   G +  + + F+EM
Sbjct: 375 TFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +  G+   P   T++ +L  L   ++++ A
Sbjct: 435 ISSGVY--PDTITIRNMLTGLWSKEELKKA 462



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 19/323 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y A+I  L K  +      L  EM+ +   P ++T   +  ++  F S+    +A  +L
Sbjct: 154 IYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT---YSCMINGFCSSGKWSEAQRLL 210

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            EM      PD   F  L++AL K   +  A  L  EM      P++    +LL G C  
Sbjct: 211 QEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDS 270

Query: 257 GKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A EL +EM 
Sbjct: 271 GKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 330

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  P+  +Y+ +I  LC+  +++EA + F  M       ++VT+ TLI+G+CK+  +D
Sbjct: 331 HRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVD 390

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-VSNYNVV 424
              E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD ++  N++
Sbjct: 391 DGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNML 450

Query: 425 IRLACKLGELKEAVNVWNEMEAA 447
             L  K  ELK+A+ +  E++ +
Sbjct: 451 TGLWSK-EELKKALAMLEELQMS 472



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 130/299 (43%), Gaps = 45/299 (15%)

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE----- 369
           S+ +LI+  C   K+  A   F ++ + G    +VT+ TL+ G C   ++    +     
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 370 --------------------------ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
                                     +LD M++ G+ PNQ+TY  I+    K  +    +
Sbjct: 77  CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 136

Query: 404 ELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            L+ +M ++  + PDV  Y+ +I    K G   +A N++ EM+   + P   ++  M++G
Sbjct: 137 NLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F   G   EA    +EM+ R +  +P   T   L+N+L++   +  A+D+   +++ G  
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKI--SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 523 LNVYAWTIWIHSLFSNGHVKEAC----SYCLDMMDAD-------VMPQPDTFAKLMRGL 570
            NV      +  L  +G +K+A     +    MMD D       V P   T+  L+ GL
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D+ ++N++I+  C   +L  A++ + ++      P   +F  ++HG   +  + EA + F
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            +M        P   T   L+N L R  +V  A  +   +V  G + N   +   +  + 
Sbjct: 74  HQM------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 537 SNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGLKK 572
             G    A +    M + + + P    ++ ++ GL K
Sbjct: 128 KMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWK 164


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 211/453 (46%), Gaps = 4/453 (0%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K+   V   + + A++    K+ +   VW L  EM + K +  T   F I++        
Sbjct: 193 KEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIK-STVYTFNIMINVLCKEGK 251

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +KKA + +  M   G +P+   +  ++   C    V+ A  + D M+ R  +P    + S
Sbjct: 252 LKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGS 311

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G CK GKL EA  +L +MK+ G  P  V YN L+ GY   G +  AF    EM R+ 
Sbjct: 312 LISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRA 371

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P  ++Y +LI AL    KM+EA+    +M  SG   D +TY  LI+G+C+     + +
Sbjct: 372 ILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAF 431

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + D MI +GI P  +TY  ++    K+  ++   +L  ++ + G  PD+  +N +I   
Sbjct: 432 NLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGH 491

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C  G L  A  +  EM+  ++ P   ++  ++ G   +G + EA E  KEM  RG+   P
Sbjct: 492 CANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGI--RP 549

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            + +   L++   +   +  A  +   +++ G    +  +   I  L  N     A    
Sbjct: 550 DHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELL 609

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
            +M+   + P   T+  L+ G+ K+ +   A++
Sbjct: 610 KEMVSKGITPDDSTYFSLIEGIGKVDDSSEASD 642



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 152/324 (46%), Gaps = 2/324 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L+   C+  +  +A      MK+ G  P I  +N +LS + ++ +    + L  EM 
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMF 228

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           R        ++ ++I  LC+  K+++A      ME  G + +VVTY T+I G+C   +++
Sbjct: 229 RLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE 288

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               +LD M  RG+ P+  TY  ++    K  +LEE   ++ +M++IG +P    YN +I
Sbjct: 289 GARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C  G+L +A    +EM   ++ P   ++ +++H    +G + EA    K+M   G++
Sbjct: 349 DGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV 408

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T   L+N   R    + A ++   +++KG +  +  +T  I+ L     +K A 
Sbjct: 409 --PDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAAD 466

Query: 546 SYCLDMMDADVMPQPDTFAKLMRG 569
                ++     P    F  L+ G
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDG 490



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 152/320 (47%), Gaps = 3/320 (0%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           +V++ L+    ++ +  DAFE    M+ KG  P   ++  ++    ++ + E     + E
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M R   ++ V T+  +I+  CK  K+ +  + + SM   G+ PN +TY  ++  +  +  
Sbjct: 227 MFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +E    ++  M+  G  PD   Y  +I   CK G+L+EA  +  +M+   L P   ++  
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNT 346

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G+  +G L++A  Y  EMV R +L  P   T   L+++L    K++ A  +   +  
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAIL--PTVSTYNLLIHALFLEGKMDEADGMIKDMGD 404

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
            G   +   + I I+     G+ K+A +   +M+   + P   T+  L+  L K    + 
Sbjct: 405 SGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKA 464

Query: 579 AAEITEK-VRKMAAERQITF 597
           A ++ EK +R+ A+   I F
Sbjct: 465 ADDLFEKIIREGASPDLIMF 484



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 2/281 (0%)

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
           +++  + D F  L   R +    ++  + +LI+A C +++ ++A   F  M+  G    +
Sbjct: 142 SRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKI 201

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            T+  ++S F K  + +  + +   M +  I     T+  ++    K+ +L++  + +G 
Sbjct: 202 ETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGS 261

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M  +G  P+V  YN VI   C  G ++ A  V + M+   + P + ++  ++ G    G 
Sbjct: 262 MENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGK 321

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           L EA    ++M   GLL  P   T   L++       +  A      +V +     V  +
Sbjct: 322 LEEASGILEKMKEIGLL--PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTY 379

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            + IH+LF  G + EA     DM D+ ++P   T+  L+ G
Sbjct: 380 NLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILING 420


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 215/443 (48%), Gaps = 8/443 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y ++I +L K +       ++  M K    +     +  ++  + S+   K
Sbjct: 232 PNVV----TYSSIIAALCKAQAMDKAMEVLTSMVKNG-VMPNCRTYNSIVHGYCSSGQPK 286

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +AI  L +M   G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+  +G LVE   +L  M   G  P+  V++ L+  YA+ GK+  A  +  +MR++G +
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  +I  LC+  ++E+A R F +M         + Y +LI   C   K D+  E+
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M+ RGI  + + +  I+ +H K+  + E  +L   M +IG  PD+  Y+ +I   C 
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCL 526

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++ EA  +   M +  + P   ++  +++G+     + +A   F+EM   G+  +P  
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDI 584

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   +L  L + ++   AK+++  I   G +L +  + I +H L  N    EA     +
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 551 MMDADVMPQPDTFAKLMRGLKKL 573
           +   D+  +  TF  ++  L K+
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKV 667



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 197/404 (48%), Gaps = 13/404 (3%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + IL++        ++A+E+L  MP  G  C PD   +  +++   K   + +A   + E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R   P++  ++S++   CK   + +A  VL  M   G  P+   YN+++ GY   G+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A   LK+M   G +P+  +Y  L+  LC+  +  EA + F  M + G + ++ TY T
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+     +   + +LD M++ GI PN   +  ++ A+ K+ ++++ + +  +MR+ G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-- 471
             PD   Y  VI + CK G +++A+  + +M    LSPG   +  ++H      C+ +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL----CIFDKW 460

Query: 472 --ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + ++  ++
Sbjct: 461 DKAKELILEMLDRGICLDTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             I      G + EA      M+   + P   T+  L+ G  K+
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 44/332 (13%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF IL+  +A    V +A+ V  +M + G  PD   +G ++  LCK+  V++A + F++M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 236 -RERFKP------SLRH-----------------------------FTSLLYGWCKEGKL 259
             ER  P      SL H                             F S++   CKEG++
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +E++ +   M   G +PDI+ Y+ L+ GY   GKM +A +LL  M   G  P+  +Y  L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C++ +ME+A   F EME SG   D++TY  ++ G  ++R+     E+   + + G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----NYNVVIRLACKLGELK 435
                TY  I+    K    +E + +   +    C+ D+      +N++I    K+G   
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKVGRND 671

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EA +++  + A  L P   ++ +M    + QG
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 1/286 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA E++ EM   G   D   F  ++D+ CK   V E+ KLFD M R   KP +  +++L+
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  GK+ EA  +L  M   G +PD V YN L++GY ++ +M DA  L +EM   G  
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y +++Q L +  +   A   +V +  SG + ++ TY  ++ G CK+   D    +
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             ++    +     T+  ++ A  K    +E  +L   +   G VPDV  Y+++     +
Sbjct: 642 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 701

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            G L+E  +++  ME    +  +     +V   L +G +  A  Y 
Sbjct: 702 QGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 42/331 (12%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC----------- 324
           P++  Y  L+      G++   F  L  + +KG   +A ++T L++ LC           
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 325 ---RMEKM----------------------EEANRAFVEMERSG--CEADVVTYTTLISG 357
              RM ++                      +EA      M   G  C  DVV+YTT+I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           F K   +D+ Y     M+ RGILPN +TY  I+ A  K + +++ +E++  M K G +P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              YN ++   C  G+ KEA+    +M +  + P   ++  ++      G   EA + F 
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 478 EMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M  RGL   P+  T   LL     +   VEM   +   +V  G   N Y ++I I +  
Sbjct: 329 SMTKRGL--KPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             G V +A      M    + P   T+  ++
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 132/278 (47%), Gaps = 9/278 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE---ADVVTYT 352
           DA  +  E+ R+G   +       +  + R       +R +  M R+G +    ++ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSR-YNRMARAGADEVTPNLCTYG 95

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL-MGEMRK 411
            LI   C + ++D  +  L ++I++G   + + +  ++      +   + +++ +  M +
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCL 469
           +GC+P+V +YN++++  C     +EA+ +   M  +     P   S+  +++GF  +G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A   + EM+ RG+L  P   T  +++ +L +AQ ++ A +V + +V  G   N   + 
Sbjct: 216 DKAYGTYHEMLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             +H   S+G  KEA  +   M    V P   T+  LM
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM 311


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 231/467 (49%), Gaps = 15/467 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           +S +PN       Y  L+  L K  +      L+ EM+++  + +   V+  L+  F S 
Sbjct: 39  SSCEPNSF----TYCILMDGLCKEGRVEEAMRLLGEMKRKGLE-VDVVVYSTLISGFCSK 93

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             + +   + DEM + G  P+  V+ CL++  CK    +EA  +   M ER  +P +  +
Sbjct: 94  GCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTY 153

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T ++ G CK+G+  +A  +   M + G EP  V YN L++G  + G + DAF++ + M  
Sbjct: 154 TCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLE 213

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKI 364
           KG      SY  LI  LC   K++EA + F  +   G   E DV+T+ T+I G CK  ++
Sbjct: 214 KGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRL 273

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           D+  EI D+MI+RG   N  T  HI++  + K   +++ +EL   + K+G VP  + Y+V
Sbjct: 274 DKAVEIYDTMIERGSFGNLFT-CHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSV 332

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   CK+  L  A  +++ M+ + LSP    +  ++     +  L +A   F+EM    
Sbjct: 333 MIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESN 392

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   +   +++  L+A  +  AK++ + +   G   + Y ++ +I+ L   G ++E
Sbjct: 393 --CEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEE 450

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           A      M+ + + P    +  L++G     N +I  E+   +R+MA
Sbjct: 451 AKGAFDSMIASGITPDNHVYDSLIKGFG--LNDEI-EEVINLLRQMA 494



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 199/423 (47%), Gaps = 10/423 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY  LI             AL +EM ++   P ++   V+  L+  F    + ++A  VL
Sbjct: 82  VYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVV---VYSCLINGFCKKGLWREATAVL 138

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
             M + G +PD + + C++  LCK+   ++A  LFD M E+  +PS   +  L+ G CKE
Sbjct: 139 HTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKE 198

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNAN 314
           G + +A  +   M + G   ++V YN L+ G    GK+ +A +L   +   G   +P+  
Sbjct: 199 GCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVI 258

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++  +IQ LC+  ++++A   +  M   G   ++ T   LI  + KS  ID+  E+   +
Sbjct: 259 TFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRV 318

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            + G++P+  TY  ++    K   L     L   M+  G  P + +YN ++   CK   L
Sbjct: 319 HKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSL 378

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           ++A  ++ EM+ ++  P T SF +M+ G L  G +  A E   +M   GL   P   T  
Sbjct: 379 EQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGL--TPDAYTYS 436

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           + +N L +  ++E AK  +  ++  G   + + +   I     N  ++E  +    M D 
Sbjct: 437 SFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADM 496

Query: 555 DVM 557
            V+
Sbjct: 497 GVI 499



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 149/279 (53%), Gaps = 6/279 (2%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           MK     PDIV YN +++G  +  ++  A +LL EM    C+PN+ +Y +L+  LC+  +
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +EEA R   EM+R G E DVV Y+TLISGFC    +DR   + D M+++GI PN + Y  
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    KK    E   ++  M + G  PDV  Y  +I   CK G  ++A+++++ M    
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG 180

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNSLLRAQKVE 507
             P T ++ V+++G   +GC+ +A + F+ M+ +G  L    Y T   L+  L    K++
Sbjct: 181 EEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNT---LIMGLCNNGKLD 237

Query: 508 MAKDVWSCIVTKG--CELNVYAWTIWIHSLFSNGHVKEA 544
            A  ++S ++  G   E +V  +   I  L   G + +A
Sbjct: 238 EAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKA 276



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 183/459 (39%), Gaps = 84/459 (18%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           PD   +  +++ LCK   +++A  L  EM     +P+   +  L+ G CKEG++ EA  +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L +MK  G E D+VVY+ L+SG+   G +     L  EM  KG  PN   Y+ LI   C+
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
                EA      M   G + DV TYT +I G CK  +  +  ++ D M ++G  P+ +T
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187

Query: 386 Y-------------------LHIMLAHEKKEE----------------LEECVELMGEMR 410
           Y                      ML   K+ E                L+E ++L   + 
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLL 247

Query: 411 KIG--CVPDVSNYNVVIRLACKLGELKEAVNV---------------------------- 440
           + G    PDV  +N VI+  CK G L +AV +                            
Sbjct: 248 EDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGI 307

Query: 441 -------WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
                  W  +    L P + ++ VM+ GF     L  A   F  M   GL  +P     
Sbjct: 308 IDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGL--SPTLFDY 365

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+ SL +   +E A+ ++  +    CE +  ++ I I      G +  A     DM  
Sbjct: 366 NTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQ 425

Query: 554 ADVMPQPDTFAKLMRGLKKL---------YNRQIAAEIT 583
             + P   T++  +  L KL         ++  IA+ IT
Sbjct: 426 MGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGIT 464



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 140/331 (42%), Gaps = 39/331 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L K    G  + + E M ++  +L       ++M    + ++  +A+++   +
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKL-DEAMKLFSSL 246

Query: 201 PKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-------------------- 238
            + G   EPD   F  ++  LCK   + +A +++D M ER                    
Sbjct: 247 LEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSG 306

Query: 239 ----------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                             PS   ++ ++ G+CK   L  AK +  +MK +G  P +  YN
Sbjct: 307 IIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYN 366

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++   +   +  A  L +EM+   C+P+  S+ ++I    +   +  A     +M++ 
Sbjct: 367 TLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQM 426

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D  TY++ I+   K  +++      DSMI  GI P+   Y  ++      +E+EE 
Sbjct: 427 GLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEV 486

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           + L+ +M  +G + D+   N ++   C   E
Sbjct: 487 INLLRQMADMGVILDLEITNSILTFLCNSAE 517



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 1/200 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           ++  + +++  F    M+  A  +   M   G  P  F +  L+ +LCK SS+++A +LF
Sbjct: 326 SSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLF 385

Query: 233 DEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            EM+E   +P    F  ++ G  K G +  AK +L  M+  G  PD   Y++ ++  +++
Sbjct: 386 QEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKL 445

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G+M +A      M   G  P+ + Y  LI+     +++EE      +M   G   D+   
Sbjct: 446 GQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEIT 505

Query: 352 TTLISGFCKSRKIDRCYEIL 371
            ++++  C S +     E+L
Sbjct: 506 NSILTFLCNSAEHLHVMELL 525


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 215/453 (47%), Gaps = 10/453 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K  +   V  L+ EMRK      ++T    +    +F     ++KA     
Sbjct: 237 YNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFG---WIEKAYSYFG 293

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G   +       +DA CK   V+EA KLF +MR R   P+   +TSL+ G CK G
Sbjct: 294 EMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 353

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  +L +M   G  P++V Y  ++ G  + GK+  A ++L  M R G   N   YT
Sbjct: 354 RLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYT 413

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI      +  E A     EM+  G E DV  Y TLI G CK +K+D    +L  M   
Sbjct: 414 TLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDC 473

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN + Y  IM A  K  +  E V L+ ++   G  P+V  Y  +I   CK G + EA
Sbjct: 474 GLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEA 533

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKAL 496
           ++ +++M    L P    +  ++ GF   G L +A     EMV +G+ L    Y    +L
Sbjct: 534 ISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVY---TSL 590

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++  ++   ++ A  + + ++  G +L++Y +T +I    +   ++EA     +M+   +
Sbjct: 591 IDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGI 650

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
            P    +  L+R  +KL N + A+ +  ++  +
Sbjct: 651 TPDKTAYNCLIRKYQKLGNMEEASSLQNEMESV 683



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 204/421 (48%), Gaps = 7/421 (1%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF  L+   A   ++  A+  L  + +    P+      +L  L +N       +LF+ +
Sbjct: 135 VFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHL 194

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
                P++  F  ++   CK+G+LVEA+ + V+MK  G  PD+V YN+L+ GY + G++ 
Sbjct: 195 P---APNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELE 251

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +   L+ EMR+ GC  +  +Y  LI    +   +E+A   F EM+R G  A+VVT +T +
Sbjct: 252 EVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFV 311

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
             FCK   +    ++   M  RG++PN+ TY  ++    K   L++ + L+ EM   G V
Sbjct: 312 DAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLV 371

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+V  Y V++   CK G++  A +V + ME A +      +  ++HG         A + 
Sbjct: 372 PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDL 431

Query: 476 FKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             EM  +G+ L    YGT   L+  L + QK++ AK +   +   G   N   +T  + +
Sbjct: 432 LNEMKNKGMELDVSLYGT---LIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDA 488

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
            F  G   EA +    + D+ + P   T+  L+ GL K  +   A    +K+R++  +  
Sbjct: 489 FFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPN 548

Query: 595 I 595
           +
Sbjct: 549 V 549


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 218/465 (46%), Gaps = 16/465 (3%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           +E  +R+  +F+ + P ++       V+++ G  +R          L +  ++  +K  N
Sbjct: 127 IELFYRMSFEFYCK-PTVKSFNSVLNVIIQAGFHDRA---------LEFYNHVVGAKDMN 176

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVK 191
            + +   +  +IKS+ K+        L  EM  RK  P   T   +  LM        + 
Sbjct: 177 ILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYT---YCTLMDGLCKVDRID 233

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+ +LDEM   GC P    F  L++ LCK        KL D M  +   P+   + +L+
Sbjct: 234 EAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLI 293

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +G C +GKL +A  +L +M  +   P+ V Y  +++G  + G+  D   +L  M  +G  
Sbjct: 294 HGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYI 353

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            N   Y+VL+  L +  K EEA R F E    GC+ + V Y+ L+ G C+ RK D   +I
Sbjct: 354 VNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKI 413

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M  +G  PN  T+  +M    +     + +E+  +M KI C  +   Y+V+I   CK
Sbjct: 414 LSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCK 473

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++ EA+ VW +M A    P   ++  M+ G    G + EA + + EM+     S P  
Sbjct: 474 DGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDV 533

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            T   L N+L +   +  A D+ + ++ +GC+ ++    I++  L
Sbjct: 534 ITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRML 578



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 195/464 (42%), Gaps = 43/464 (9%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F ++++      +V  AIE+  EMP   C PD + +  L+D LCK   + EA  L DEM+
Sbjct: 184 FNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQ 243

Query: 237 -ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            E   PS   F  L+ G CK+G       ++  M   G  P+ V YN L+ G    GK+ 
Sbjct: 244 IEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 303

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A  LL  M    C PN  +Y  +I  L +  +  +  R  V ME  G   +   Y+ L+
Sbjct: 304 KALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLV 363

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           SG  K  K +    +    + +G   N + Y  ++    +  + +E ++++ EM   GC 
Sbjct: 364 SGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCA 423

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+   ++ +++   ++G   +A+ VW +M   + +     + V++HG    G        
Sbjct: 424 PNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDG-------- 475

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
                                        KV  A  VW+ ++  GC  +V A++  I  L
Sbjct: 476 -----------------------------KVMEAMMVWAKMLATGCRPDVVAYSSMIQGL 506

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPD--TFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593
              G V+EA     +M+  +   QPD  T+  L   L K  +   A ++   +     + 
Sbjct: 507 CDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDP 566

Query: 594 Q-ITFKMYKR--RGERDLKEKAKKQVDGRKRRARQRRWGGGRSK 634
             +T  ++ R  R + D  +   K +D    R  +R+   G SK
Sbjct: 567 DLVTCNIFLRMLREKLDPPQDGAKFLDELVVRLLKRQRNLGASK 610



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 200/455 (43%), Gaps = 17/455 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +LI++ +    F ++  ++  MR E  ++ + + F ++ + +  A +  KAIE+   M
Sbjct: 75  FYSLIENYAYSSDFNSLEKVLNRMRLEN-RVFSEKSFFVMFKAYGKAHLPNKAIELFYRM 133

Query: 201 P-KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM----RERFKPSLRHFTSLLYGWCK 255
             ++ C+P    F  +L+ + +      A + ++ +         P++  F  ++   CK
Sbjct: 134 SFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCK 193

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G +  A  +  +M      PD   Y  L+ G  ++ ++ +A  LL EM+ +GC P+  +
Sbjct: 194 LGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPAT 253

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           + VLI  LC+        +    M   GC  + VTY TLI G C   K+D+   +LD M+
Sbjct: 254 FNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMV 313

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
               +PN++TY  I+    K+    +   ++  M + G + +   Y+V++    K G+ +
Sbjct: 314 SSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSE 373

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA+ ++ E         T  +  +V G        EA +   EM  +G   AP   T  +
Sbjct: 374 EAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKG--CAPNAFTFSS 431

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+           A +VW  +    C  N   +++ IH L  +G V EA      M+   
Sbjct: 432 LMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATG 491

Query: 556 VMPQPDTFAKLMRGL---------KKLYNRQIAAE 581
             P    ++ +++GL          KLYN  +  E
Sbjct: 492 CRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLE 526



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 64/252 (25%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y AL+  L + RK      ++ EM  +   P   T   F  LM+ F       KAIEV 
Sbjct: 393 LYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFT---FSSLMKGFFEVGNSHKAIEVW 449

Query: 198 DEMPKY-----------------------------------GCEPDEFVFGCLLDALCKN 222
            +M K                                    GC PD   +  ++  LC  
Sbjct: 450 KDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDA 509

Query: 223 SSVKEAAKLFDEM---RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
            SV+EA KL++EM       +P +  +  L    CK+  +  A  +L  M D G +PD+V
Sbjct: 510 GSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLV 569

Query: 280 VYNNLL-----------SGYAQMGKMT----------DAFELLKEMRRKGCDPNANSYTV 318
             N  L            G   + ++            A ++++ M +K   P A+++  
Sbjct: 570 TCNIFLRMLREKLDPPQDGAKFLDELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWAR 629

Query: 319 LIQALCRMEKME 330
           ++  LC+ +K++
Sbjct: 630 VVHELCQPKKIQ 641


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 219/466 (46%), Gaps = 73/466 (15%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F I++  +      K A+E L+ M KY C PD   +  +LDALCK   + +A  L  +M
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDM 269

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV--------------------------- 267
           + R   P+   +  L+YG+CK G L EA  V+                            
Sbjct: 270 KSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRI 329

Query: 268 --------QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
                   +M++    PD+V YN L++G  +  K+++AF+LL+EM  KG  PNA ++ ++
Sbjct: 330 EEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIM 389

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS------------------ 361
           ++  C+  KM++A+    +ME SG   D VTY TLI+G+CK+                  
Sbjct: 390 VKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNM 449

Query: 362 -----------------RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                            +K++  Y++L S  +RG   ++++Y  +++ + K   ++  ++
Sbjct: 450 KMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALK 509

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  EM++   +P    YN +I   C+ G+ ++A++  NE+  + L P   ++  ++HG+ 
Sbjct: 510 LWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYC 569

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G + +A ++  +MV       P   T   LL  L     +E A  +++  V+KG  ++
Sbjct: 570 REGDVEKAFQFHNKMVENSF--KPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAID 627

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              +   I SL   G + +A +   +M + ++ P   T+  ++  L
Sbjct: 628 TVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITAL 673



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 193/382 (50%), Gaps = 6/382 (1%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCK---NSSVKEAAKLF-DEMRERFKPSLRHFTS 248
           A ++  +M +    P+      LL++L +   + SV  + + F D ++    P++  F  
Sbjct: 154 AFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++YG+C E K  +A   L  M      PD V YN +L    + G++ DA +LL +M+ +G
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRG 273

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN N+Y +L+   C+M  ++EA      M ++    DV TY  LI+G C   +I+  +
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAF 333

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ D M    +LP+ ++Y  ++    +  ++ E  +L+ EM + G  P+   +N++++  
Sbjct: 334 KLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWY 393

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G++ +A N   +ME +  SP   ++  +++G+   G + EA     EM GR  +   
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEM-GRKNMKMD 452

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              TL  +L +L R +K+E A  + S    +G  ++  ++   I   F +G+V  A    
Sbjct: 453 SV-TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLW 511

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
            +M + +++P   T+  ++ GL
Sbjct: 512 DEMKEKEIIPSTVTYNCIIGGL 533



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/521 (23%), Positives = 232/521 (44%), Gaps = 71/521 (13%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQ 170
           R GDA +L     +   K    + + + Y  L+    KM        ++E M +    P 
Sbjct: 258 RLGDARDL-----LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           + T   + +L+    +   +++A ++ DEM      PD   +  L++   + S + EA K
Sbjct: 313 VWT---YNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFK 369

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           L +EM E+  KP+      ++  +CKEGK+ +A   + +M+++GF PD V YN L++GY 
Sbjct: 370 LLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYC 429

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G M +AF  + EM RK    ++ +   +++ LCR +K+EEA +      + G   D V
Sbjct: 430 KAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEV 489

Query: 350 TYTTL-----------------------------------ISGFCKSRKIDRCYEILDSM 374
           +Y TL                                   I G C+  K ++    L+ +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           ++ G+LP++ TY  I+  + ++ ++E+  +   +M +    PDV   N+++R  C  G L
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGML 609

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           ++A+ ++N   +   +  T ++  ++     +G L +A     EM  + L   P + T  
Sbjct: 610 EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKEL--GPDHYTYN 667

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKG------CELN-----------------VYAWTIW 531
           A++ +L  + ++  A++  S ++ KG       +L+                   A++ W
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEW 727

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           I  L + G  K+A     +     +     T+  LM GL K
Sbjct: 728 IKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIK 768



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 156/352 (44%), Gaps = 8/352 (2%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN-- 333
           P   + +  +  Y Q G+   AF++ K+M+R    PN  +   L+ +L R       +  
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 334 -RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
             AF +  + G   +V T+  +I G+C   K     E L+ M +    P+ +TY  I+ A
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDA 252

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             KK  L +  +L+ +M+  G +P+ + YN+++   CK+G LKEA NV   M   +L P 
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++ ++++G   +G + EA +   EM    LL  P   +   L+N  L   K+  A  +
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLL--PDVVSYNTLINGCLEWSKISEAFKL 370

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +  KG + N     I +      G + +A +    M ++   P   T+  L+ G  K
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 573 LYNRQIAAEITEKV-RKMAAERQITFKMYKRR--GERDLKEKAKKQVDGRKR 621
             N   A    +++ RK      +T     R    E+ L+E  K     RKR
Sbjct: 431 AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 26/271 (9%)

Query: 118 GNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
           GN+     +W   K+   + S   Y  +I  L +  K     + + E+  E   L     
Sbjct: 502 GNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELL-ESGLLPDETT 560

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  ++  +     V+KA +  ++M +   +PD F    LL  LC    +++A KLF+   
Sbjct: 561 YNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWV 620

Query: 237 ERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            + K      + +L+   CKEG+L +A  +L +M++    PD   YN +++     G++ 
Sbjct: 621 SKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIR 680

Query: 296 DAFELLKEMRRKGCDP------NAN-----------------SYTVLIQALCRMEKMEEA 332
           +A E + +M  KG  P      + N                 +Y+  I+ LC   K ++A
Sbjct: 681 EAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDA 740

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
            R F E ++ G   D  TY  L+ G  K RK
Sbjct: 741 MRIFGESKQKGITVDKSTYINLMDGLIKRRK 771


>gi|357145431|ref|XP_003573640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 523

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 188/352 (53%), Gaps = 9/352 (2%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + +   I +  K  +F   WA +  M      ++T    +I+M R+A+A  ++KA++  D
Sbjct: 142 EAWHLAIWAAGKAGRFDLAWAAVRRMLHRG--VLTRRAMIIVMERYAAASELEKALKTFD 199

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEG 257
            M K+  + D+ VF  LL ALCK+ ++++A +L   MR++F P +   F  +L GWC   
Sbjct: 200 VMEKFKVQADQAVFYSLLRALCKSKNIEDAEELL-LMRKKFFPLTAEGFNIILDGWCNII 258

Query: 258 -KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + EAK V  +M      PD   Y  ++S ++++G + D   +  EM+++G  P    Y
Sbjct: 259 IDVAEAKRVWKEMSSYCITPDGTSYTLMVSCFSKVGNLFDTLRVYDEMKKRGWTPGIGVY 318

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L+  L R   M++A + F ++   G + +V TY ++I   C+S K+D    ++  MI 
Sbjct: 319 NSLVYVLTRENCMKDAKKIFSKIIDEGLQLNVETYNSMIIPLCESCKLDEARIMMGDMIM 378

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI+P  LTY H  L   K+E ++E ++L+ +M++ GC P+   + ++I    +  E   
Sbjct: 379 KGIVPTILTY-HAFL---KQEGVDETLQLLRKMKENGCGPNSDTFLMLIDKFIQANESGN 434

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           A+ VWNEM    +SP    ++ ++ G +  GC+  A EY+ EM  +G  S P
Sbjct: 435 ALRVWNEMIRYDISPAYSHYMAVIQGLVKHGCIPRALEYYDEMKAKGFASDP 486



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 40/294 (13%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P    ++  +    + G+   A+  ++ M  +G      +  ++++      ++E+A + 
Sbjct: 139 PPAEAWHLAIWAAGKAGRFDLAWAAVRRMLHRGV-LTRRAMIIVMERYAAASELEKALKT 197

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F  ME+   +AD   + +L+   CKS+ I+   E+L  ++++   P  LT          
Sbjct: 198 FDVMEKFKVQADQAVFYSLLRALCKSKNIEDAEELL--LMRKKFFP--LT---------- 243

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-ELKEAVNVWNEMEAASLSPGTD 454
                                    +N+++   C +  ++ EA  VW EM +  ++P   
Sbjct: 244 ----------------------AEGFNIILDGWCNIIIDVAEAKRVWKEMSSYCITPDGT 281

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           S+ +MV  F   G L +    + EM  RG    P  G   +L+  L R   ++ AK ++S
Sbjct: 282 SYTLMVSCFSKVGNLFDTLRVYDEMKKRGW--TPGIGVYNSLVYVLTRENCMKDAKKIFS 339

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
            I+ +G +LNV  +   I  L  +  + EA     DM+   ++P   T+   ++
Sbjct: 340 KIIDEGLQLNVETYNSMIIPLCESCKLDEARIMMGDMIMKGIVPTILTYHAFLK 393



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-R 236
           ++    F     V + +++L +M + GC P+   F  L+D   + +    A ++++EM R
Sbjct: 385 ILTYHAFLKQEGVDETLQLLRKMKENGCGPNSDTFLMLIDKFIQANESGNALRVWNEMIR 444

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
               P+  H+ +++ G  K G +  A     +MK  GF  D ++
Sbjct: 445 YDISPAYSHYMAVIQGLVKHGCIPRALEYYDEMKAKGFASDPIL 488


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 191/381 (50%), Gaps = 3/381 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +K+A  +L  M   G  PD   +  +++  C+   + +  KL + M R+  KP+   + S
Sbjct: 262 IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 321

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   C+  KL EA+    +M   G  PD VVY  L+ G+ + G +  A +   EM  + 
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +YT +I   C++  M EA + F EM   G E D VT+T LI+G+CK+  +   +
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + + MIQ G  PN +TY  ++    K+ +L+   EL+ EM KIG  P++  YN ++   
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G ++EAV +  E EAA L+  T ++  ++  +   G + +A E  KEM+G+GL   P
Sbjct: 502 CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL--QP 559

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   L+N       +E  + + + ++ KG   N   +   +       ++K A +  
Sbjct: 560 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 619

Query: 549 LDMMDADVMPQPDTFAKLMRG 569
            DM    V P   T+  L++G
Sbjct: 620 KDMCSRGVGPDGKTYENLVKG 640



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 192/411 (46%), Gaps = 43/411 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++    +  +   VW L+E M+++  KP        + L+ R      + +A E   
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK---LAEAEEAFS 340

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  PD  V+  L+D  CK   ++ A+K F EM  R   P +  +T+++ G+C+ G
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +VEA  +  +M   G EPD V +  L++GY + G M DAF +   M + GC PN  +YT
Sbjct: 401 DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 460

Query: 318 VLIQALCRMEKMEEANRAFVEM-----------------------------------ERS 342
            LI  LC+   ++ AN    EM                                   E +
Sbjct: 461 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 520

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G  AD VTYTTL+  +CKS ++D+  EIL  M+ +G+ P  +T+  +M        LE+ 
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 580

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +L+  M   G  P+ + +N +++  C    LK A  ++ +M +  + P   ++  +V G
Sbjct: 581 EKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 640

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
                 + EA   F+EM G+G   +    T   L+   L+ +K   A++V+
Sbjct: 641 HCKARNMKEAWFLFQEMKGKGF--SVSVSTYSVLIKGFLKRKKFLEAREVF 689



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 188/397 (47%), Gaps = 4/397 (1%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKLFDE 234
           VF +  +      ++++A  V ++M  YG           L  L K+      A  +F E
Sbjct: 177 VFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFRE 236

Query: 235 MRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
             E     ++  +  +++  C+ G++ EA ++L+ M+  G+ PD++ Y+ +++GY + G+
Sbjct: 237 FPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGE 296

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +   ++L++ M+RKG  PN+  Y  +I  LCR+ K+ EA  AF EM R G   D V YTT
Sbjct: 297 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI GFCK   I    +    M  R I P+ LTY  I+    +  ++ E  +L  EM   G
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD   +  +I   CK G +K+A  V N M  A  SP   ++  ++ G   +G L  A 
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E   EM   GL   P   T  +++N L ++  +E A  +       G   +   +T  + 
Sbjct: 477 ELLHEMWKIGL--QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +   +G + +A     +M+   + P   TF  LM G 
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 128 ASKQPNYVHSYDV------YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVI 179
           ASK    +HS D+      Y A+I    ++        L  EM  +  +P  +T   F  
Sbjct: 370 ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT---FTE 426

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L+  +  A  +K A  V + M + GC P+   +  L+D LCK   +  A +L  EM +  
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  + S++ G CK G + EA  ++ + + AG   D V Y  L+  Y + G+M  A 
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+LKEM  KG  P   ++ VL+   C    +E+  +    M   G   +  T+ +L+  +
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C    +     I   M  RG+ P+  TY +++  H K   ++E   L  EM+  G    V
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 666

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
           S Y+V+I+   K  +  EA  V+++M    L+   + F
Sbjct: 667 STYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 179/369 (48%), Gaps = 8/369 (2%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ-MGKMTDAFELLKEMRRKGCDPNANS 315
           G L EA+ V  +M + G    +   N  L+  ++   K   A  + +E    G   N  S
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 248

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y ++I  +C++ +++EA+   + ME  G   DV++Y+T+++G+C+  ++D+ +++++ M 
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           ++G+ PN   Y  I+    +  +L E  E   EM + G +PD   Y  +I   CK G+++
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A   + EM +  ++P   ++  ++ GF   G ++EA + F EM  +GL   P   T   
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL--EPDSVTFTE 426

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+N   +A  ++ A  V + ++  GC  NV  +T  I  L   G +  A     +M    
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFKM----YKRRGERDLKE 610
           + P   T+  ++ GL K  N + A ++  +          +T+      Y + GE D  +
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 611 KAKKQVDGR 619
           +  K++ G+
Sbjct: 547 EILKEMLGK 555



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 7/261 (2%)

Query: 126 MW-ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           MW    QPN       Y +++  L K         L+ E          T  +  LM  +
Sbjct: 482 MWKIGLQPNIF----TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN-ADTVTYTTLMDAY 536

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
             +  + KA E+L EM   G +P    F  L++  C +  +++  KL + M  +   P+ 
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 596

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F SL+  +C    L  A  +   M   G  PD   Y NL+ G+ +   M +A+ L +E
Sbjct: 597 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M+ KG   + ++Y+VLI+   + +K  EA   F +M R G  AD   +        K ++
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKR 716

Query: 364 IDRCYEILDSMIQRGILPNQL 384
            D   + +D +I+  ++  QL
Sbjct: 717 PDTIVDPIDEIIENYLVDEQL 737


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 210/429 (48%), Gaps = 13/429 (3%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKF 154
           L  +G+   P L   V +    +  L +  Y+WA  QP +     ++ ++I +L+KM++F
Sbjct: 95  LTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVINALAKMKEF 154

Query: 155 GAVWALM----EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL----DEMPKYGCE 206
              W+L+         +  +L++   F I++RR+A A M K AI       D+       
Sbjct: 155 DDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKSIVDSV 214

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER---FKPSLRHFTSLLYGWCKEGKLVEAK 263
            +  +F  L+D+LCK  S +EA++     +E    + PS+R +  +L GW +  KL  A+
Sbjct: 215 SEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAE 274

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +  +MK+    P +V Y  L+ GY +M ++  A E++ EM ++G  PNA  Y  +I AL
Sbjct: 275 RLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDAL 334

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
               + +EA               + TY +L+ GFCK+  I+   +IL  MI RG LP  
Sbjct: 335 AEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIP 394

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            TY +      +  +++E + L  +M + G  PD   Y++V+++ C+  +L+ AV V  E
Sbjct: 395 TTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSME 454

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M          +  ++ H       L EA   F++M+ RG++  PQY T + L   L + 
Sbjct: 455 MRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGII--PQYLTFQKLNVELKKQ 512

Query: 504 QKVEMAKDV 512
              EMA+ +
Sbjct: 513 GMNEMARKL 521



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 154/387 (39%), Gaps = 78/387 (20%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           P++F    L+  L  N S+   + L   + +   KP+     ++   +    KL+ + Y 
Sbjct: 70  PNDF---TLISTLFTNPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSLY- 125

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-----NANSYTVLI 320
           L  +   GF+PD  +++++++  A+M +  DA+ L+ +  R+  D      +  ++ ++I
Sbjct: 126 LWALNQPGFKPDSSLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIII 185

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL-DSMIQRGI 379
           +   R    + A R F   +      D V+  +L             +EIL DS+ + G 
Sbjct: 186 RRYARAGMHKAAIRTFEFAKDKKSIVDSVSEMSL-------------FEILIDSLCKEGS 232

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
                       A E  E L     L  +   +G VP +  YN+++    +  +LK A  
Sbjct: 233 ------------AREASEYL-----LRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAER 275

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +W EM+  ++ P   ++  +V G+    C +   E   EMVG                  
Sbjct: 276 LWEEMKNENVRPSVVTYGTLVEGY----CRMRRVEKALEMVG------------------ 313

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
                  EM K+        G + N   +   I +L   G  KEA           + P 
Sbjct: 314 -------EMTKE--------GIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPT 358

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             T+  L++G  K  + + A++I +K+
Sbjct: 359 LSTYNSLVKGFCKAGDIEGASKILKKM 385


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 218/481 (45%), Gaps = 50/481 (10%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVK 191
           +V S      L+  L K    G+ + L+ +++K    P L    V+  L+        + 
Sbjct: 316 FVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLF---VYNALINSMCKDGKLD 372

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLL 250
           +A  + + M   G  P++  +  L+D+ CK   +  A     +M E   K ++  ++SL+
Sbjct: 373 EAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLI 432

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK GKL  AK +  +M   G +P++V+Y +L+SGY + G++ +AF L  EM  KG  
Sbjct: 433 SGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS 492

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  ++T LI  LC   +M EAN+ F EM       + VTY  LI G CK     R +E+
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM----GEMRKI----GCVPDVSNYN 422
           LD M+++G++P+  TY  ++        + E  E M    GE +K+    GC+P+V  Y 
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYT 612

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV------------------------- 457
            +I   CK+G + +A  +  EM A++  P  +++                          
Sbjct: 613 ALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEG 672

Query: 458 ---------VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
                    +++ GF   G + EA E    M+  G+  +P   +   ++    R   ++ 
Sbjct: 673 FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGI--SPDCISYSTIIYEYCRRGDLKE 730

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  +W  ++ +G   +  A+   I+     G + +A     DMM   V P   T+  L+ 
Sbjct: 731 AIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIH 790

Query: 569 G 569
           G
Sbjct: 791 G 791



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 223/493 (45%), Gaps = 24/493 (4%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           S   Y   I+ L K ++   VW  +E   +   K        +  L+         +   
Sbjct: 249 SVATYNVFIRGLCKNQR---VWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGE 305

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGW 253
           E+++EM ++G  P E     L+D L K  ++  A  L +++++    PSL  + +L+   
Sbjct: 306 EMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSM 365

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+GKL EA+ +   M   G  P+ V Y+ L+  + + GK+  A   L +M   G     
Sbjct: 366 CKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATV 425

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
             Y+ LI   C++ K+  A   F EM  +G + +VV YT+LISG+CK  ++   + +   
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHE 485

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M  +GI PN  T+  ++        + E  +L GEM +   +P+   YNV+I   CK G 
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG--------RGLL 485
              A  + +EM    L P T ++  ++ G    G + EA E+  ++ G         G L
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCL 605

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  AL+N L +   ++ A+ +   ++      N   +  ++  L S G++++A 
Sbjct: 606 --PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAI 663

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAAERQITFKM----Y 600
               D++    +    T+  L+RG  KL   Q AAE+    +    +   I++      Y
Sbjct: 664 QL-HDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEY 722

Query: 601 KRRGERDLKEKAK 613
            RRG  DLKE  K
Sbjct: 723 CRRG--DLKEAIK 733



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 184/386 (47%), Gaps = 17/386 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K+ K  A  +L +EM     KP ++   ++  L+  +     +  A  +  
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV---IYTSLISGYCKEGELHNAFRLYH 484

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+ + F  L+  LC  + + EA KLF EM E    P+   +  L+ G CKEG
Sbjct: 485 EMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEG 544

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK--------GC 309
             V A  +L +M + G  PD   Y  L+SG    G++++A E + +++ +        GC
Sbjct: 545 NTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGC 604

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +YT LI  LC++  M++A     EM  S    +  TY   +        I++  +
Sbjct: 605 LPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ 664

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D +++ G L N +TY  ++    K   ++E  E++  M   G  PD  +Y+ +I   C
Sbjct: 665 LHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYC 723

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           + G+LKEA+ +W  M    ++P T ++  +++G    G L +A E   +M+ RG+   P 
Sbjct: 724 RRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGV--KPN 781

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSC 515
             T  +L++       V    D +SC
Sbjct: 782 RATYNSLIHGTCLMSSVSSTADYFSC 807



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/534 (21%), Positives = 229/534 (42%), Gaps = 60/534 (11%)

Query: 93  LALQHSGV--VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           +AL +S +   L+P   E+V+ +  D   L  R++ +     N+ HS   +  LI +L +
Sbjct: 46  VALNNSFISQTLKPHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQ 105

Query: 151 MRKF------------------GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
              +                  G   + ++  R  K    TT  F +L++ +   R    
Sbjct: 106 SNLYWPASSLLQTLLLRGLNPEGLFESFLDSYR--KCNFSTTLGFDLLIQTYVQNRRELD 163

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
            + V+  M   G  P       +L+ L +    + A  LFDE+     +P +  +T+++ 
Sbjct: 164 GLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVR 223

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
             C+    + A+ V+ +M+ +G +  +  YN  + G  +  ++ +A E+   +  KG   
Sbjct: 224 SLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEM-------------------------------- 339
           +  +Y  L+  LC++E+ E       EM                                
Sbjct: 284 DVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLV 343

Query: 340 ---ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
              ++ G    +  Y  LI+  CK  K+D    + ++M  +G+ PN +TY  ++ +  K+
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKR 403

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            +L+  +  +G+M ++G    V  Y+ +I   CKLG+L+ A ++++EM A  L P    +
Sbjct: 404 GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++ G+  +G L  A   + EM G+G+  +P   T  AL++ L  A ++  A  ++  +
Sbjct: 464 TSLISGYCKEGELHNAFRLYHEMTGKGI--SPNTYTFTALISGLCHANRMAEANKLFGEM 521

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V      N   + + I      G+   A     +M++  ++P   T+  L+ GL
Sbjct: 522 VEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGL 575


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 230/493 (46%), Gaps = 44/493 (8%)

Query: 120 LGYRYYMWASKQPNYVHSYD--VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF 177
           LG  ++ WASKQ    +S D  V  +L+K L++ R F  +  L+E M K K  + T E  
Sbjct: 76  LGLNFFEWASKQSTLSNSLDGFVCSSLLKLLARFRVFKEIENLLETM-KSKELIPTCEAL 134

Query: 178 VILMRRFASARMVKKAIEVLDE-MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
             ++  +A + +VK+A+E+ +  +  + C PD F    LL+ L  +  V+ A K++DEM 
Sbjct: 135 SFVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMV 194

Query: 237 ERFKPSLRHFTSLLY--GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +R    + ++T  +   G CKEGK+ E ++++ +    G  P+IV YN L+ GY + G +
Sbjct: 195 DR-NGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDI 253

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME-------------- 340
             A  L KE++ KG  P   +Y  +I A C+  K E  ++  VEM+              
Sbjct: 254 ERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGI 313

Query: 341 ---------------------RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                                 SGCE D+ TY TLI+G C   K+    E+L+  I+RG+
Sbjct: 314 IDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGL 373

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN+ +Y  ++ A  K  E     EL+ EM + G   D+  Y  ++      GE+  A+ 
Sbjct: 374 FPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALT 433

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V ++M    + P  + + V++ G   +G    A +   EM+ + +   P       L++ 
Sbjct: 434 VRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNV--TPDAFVNATLVDG 491

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            +R   ++ AK ++   + +G + +V      I      G + +A      M +    P 
Sbjct: 492 FIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPD 551

Query: 560 PDTFAKLMRGLKK 572
             T++ ++ G  K
Sbjct: 552 EFTYSTIIDGYVK 564



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 179/438 (40%), Gaps = 73/438 (16%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
           GC P+   +  L+D  CKN  ++ A  LF E++ + F P+++ + +++  +CK+GK    
Sbjct: 232 GCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAV 291

Query: 263 KYVLVQMKDAGF-----------------------------------EPDIVVYNNLLSG 287
             +LV+MK+ G                                    EPD+  YN L++G
Sbjct: 292 DKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLING 351

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
               GK+ +A ELL+   R+G  PN  SYT LI A  +  +   A+   +EM   G   D
Sbjct: 352 SCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLD 411

Query: 348 VVTYTTLI-----------------------------------SGFCKSRKIDRCYEILD 372
           ++ Y  L+                                   SG CK  +     ++L 
Sbjct: 412 LIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLV 471

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ + + P+      ++    +   L+E  +L     + G    V   N +I+  CK G
Sbjct: 472 EMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYG 531

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + +A+  +  M     SP   ++  ++ G++ Q  L  A   F  M+ +     P   T
Sbjct: 532 MMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKK--TCKPNVVT 589

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             +L+N   R   +  A+ V+  + + G E NV  +TI I      G + +AC +   M+
Sbjct: 590 FTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQML 649

Query: 553 DADVMPQPDTFAKLMRGL 570
               +P   TF  L+ GL
Sbjct: 650 INKCIPNDATFNYLVNGL 667



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 204/492 (41%), Gaps = 45/492 (9%)

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           + L+K   ++ K   +W    E+R  +     +E+   +  +    R+     E   +  
Sbjct: 29  KYLVKDTIRIIKTETLWQEALEIRFSETDTRVSEIAHFVFDQIHDPRLGLNFFEWASKQS 88

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
                 D FV   LL  L +    KE   L + M+ +   P+    + ++  +   G + 
Sbjct: 89  TLSNSLDGFVCSSLLKLLARFRVFKEIENLLETMKSKELIPTCEALSFVISAYAGSGLVK 148

Query: 261 EAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           EA  +   + D     PD+   N+LL+     GK+  A ++  EM  +  D +  +  ++
Sbjct: 149 EALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIV 208

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
            + LC+  K+EE      +    GC  ++V Y TLI G+CK+  I+R   +   +  +G 
Sbjct: 209 TKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGF 268

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMR----------------------------- 410
           LP   TY  ++ A  KK + E   +L+ EM+                             
Sbjct: 269 LPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAAD 328

Query: 411 ------KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
                 + GC PD++ YN +I  +C  G+++EA  +        L P   S+  ++H F 
Sbjct: 329 AVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFS 388

Query: 465 GQGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             G  + A E   EM  RG  L    YG   AL++ L+ A +V++A  V   ++ +G   
Sbjct: 389 KNGEYVRASELLIEMSERGHTLDLIAYG---ALVHGLVVAGEVDVALTVRDKMMERGILP 445

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           +   + + +  L   G    A    ++M+D +V P     A L+ G  +  N   A    
Sbjct: 446 DANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEA---- 501

Query: 584 EKVRKMAAERQI 595
           +K+ ++  ER I
Sbjct: 502 KKLFQLTIERGI 513



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 163/395 (41%), Gaps = 27/395 (6%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L+  F+      +A E+L EM + G   D   +G L+  L     V  A  + D+M 
Sbjct: 380 YTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMM 439

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           ER   P    +  L+ G CK+G+   AK +LV+M D    PD  V   L+ G+ + G + 
Sbjct: 440 ERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLD 499

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A +L +    +G D +      +I+  C+   M +A   F  M       D  TY+T+I
Sbjct: 500 EAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTII 559

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G+ K   +     +   M+++   PN +T+  ++    +  +L    ++  EMR  G  
Sbjct: 560 DGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFE 619

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+V  Y ++I   CK G+L +A   + +M      P   +F  +V+G      +      
Sbjct: 620 PNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIA----- 674

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
                                ++S     +  +  + +  +++ G +  + A+   +  L
Sbjct: 675 ---------------------ISSKRSNSQPNLTLEFFGMMISDGWDWRIAAYNSILLCL 713

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +  VK A      MM     P P +F  L+ GL
Sbjct: 714 CQHKMVKPALQLHDKMMSKGFPPDPVSFIALLHGL 748


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 214/461 (46%), Gaps = 43/461 (9%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L++ F + R V KA+ V++ + K+G +PD F +  L++  CK + + +A ++ D MR + 
Sbjct: 126 LIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 184

Query: 239 FKPSLRHFTSLLYGWCKEGKLV-----------------------------------EAK 263
           F P    +  ++   C  GKL                                    EA 
Sbjct: 185 FSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEAL 244

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +L +M   G +PD+  YN ++ G  + G +  AFE+++ +  KGC+P+  SY +L++AL
Sbjct: 245 KLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRAL 304

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
               K EE  +   +M    C+ +VVTY+ LI+  C+  KI+    +L  M ++G+ P+ 
Sbjct: 305 LNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 364

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            +Y  ++ A  ++  L+  +E +  M   GC+PD+ NYN V+   CK G+  +A+ ++ +
Sbjct: 365 YSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK 424

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           +     SP + S+  M       G  I A     EMV  G+   P   T  ++++ L R 
Sbjct: 425 LGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGI--DPDEITYNSMISCLCRE 482

Query: 504 QKVEMAKDVWSCIVTKGCEL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
             V+ A ++   +  + CE   +V  + I +        +++A      M+     P   
Sbjct: 483 GMVDKAFELL--VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNET 540

Query: 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKR 602
           T+  L+ G+     R  A E+   + ++ A  + +FK   R
Sbjct: 541 TYTVLIEGIGFAGYRAEAMELANDLVRINAISEYSFKRLHR 581



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 216/444 (48%), Gaps = 3/444 (0%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           +++  PN+ +      +  ++L       A+     +   +      T++  I  R   S
Sbjct: 39  FSNSNPNHDNGKSFSSSGARNLQATTTDAAIPTERRQQHSQSLGFRDTQMLKIFHRSCRS 98

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF 246
              ++ ++ +L+ M + G  PD  +   L+       +V +A ++ + + +  +P +  +
Sbjct: 99  GNYIE-SLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAY 157

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L+ G+CK  ++ +A  VL +M+   F PD V YN ++      GK+  A ++L ++  
Sbjct: 158 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLS 217

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
             C P   +YT+LI+A      ++EA +   EM   G + D+ TY T+I G CK   +DR
Sbjct: 218 DNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDR 277

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            +E++ ++  +G  P+ ++Y  ++ A   + + EE  +LM +M    C P+V  Y+++I 
Sbjct: 278 AFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILIT 337

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C+ G+++EA+N+   M+   L+P   S+  ++  F  +G L  A E+ + M+  G L 
Sbjct: 338 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCL- 396

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P       +L +L +  K + A +++  +   GC  N  ++     +L+S+G    A  
Sbjct: 397 -PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 455

Query: 547 YCLDMMDADVMPQPDTFAKLMRGL 570
             L+M+   + P   T+  ++  L
Sbjct: 456 MILEMVSNGIDPDEITYNSMISCL 479


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/506 (23%), Positives = 227/506 (44%), Gaps = 73/506 (14%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           I T  F IL+          +AI VL +M  YGC PD   +  +LD LCK   + EA  L
Sbjct: 195 INTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDL 254

Query: 232 FDEMRER------------------------------------FKPSLRHFTSLLYGWCK 255
             +M+ +                                      P    +  ++ G+CK
Sbjct: 255 LLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCK 314

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +G++ EA  +  +M++    PD+V YN L++G  + G   + F+L++EM  +G  PN+ +
Sbjct: 315 QGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVT 374

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS------------------- 356
           Y V+++   +  KM+E ++   +ME SGC  D+VTY TLIS                   
Sbjct: 375 YNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMG 434

Query: 357 ----------------GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
                             C+ RK+D  +++L S  +RG   ++++Y  +++ + K E+  
Sbjct: 435 RKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKAS 494

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           + + L  EM++   +P +  YN +I   C++G+  +A++  +E+  + L P   ++  ++
Sbjct: 495 QALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTII 554

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           HG+  +G + +A ++  +MV +     P   T   LL  L +   +E A  +++  ++KG
Sbjct: 555 HGYCQEGQVEKAFQFHNKMVEKNF--KPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG 612

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
            +++  ++   I SL       EA     +M +  + P   T+  ++ GL      + A 
Sbjct: 613 KDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAE 672

Query: 581 EITEKVRKMAAERQITFKMYKRRGER 606
           E   K+ +         ++ KR+  R
Sbjct: 673 EFISKIAEKGKSENQFLELGKRQDAR 698



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 217/480 (45%), Gaps = 48/480 (10%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL----ITTEVFVILMRRFASARM 189
           Y H Y   ++L+ S   + K  ++  L+   +K    +    I+  +  I +  + +   
Sbjct: 81  YRHFY-AAKSLLSSFIPVDKSSSLHYLLLHPQKTNNPVSCLHISKPLLDISIGAYVACGR 139

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK---NSSVKEAAKLF-DEMRERFKPSLRH 245
             +A ++ + M + G +P       LL+AL +   + S++ +  +F D ++   K +   
Sbjct: 140 PHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNS 199

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L++G C E +  EA  VL +M+D G  PD + YN +L G  + G++ +A +LL +M+
Sbjct: 200 FNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMK 259

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK-- 363
            KG  PN  ++ +L+   CR+  ++EA      M ++    D  TY  +ISGFCK  +  
Sbjct: 260 NKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIA 319

Query: 364 ------------------------IDRCYE---------ILDSMIQRGILPNQLTYLHIM 390
                                   I+ C+E         +++ M  RG+ PN +TY  ++
Sbjct: 320 EAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMV 379

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               KK +++E  + + +M + GC+PD+  YN +I   CK+G++ EA  + +EM    L 
Sbjct: 380 KWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLK 439

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNSLLRAQKVEMA 509
               +   M+     +  L EA +       RG  +    YGT   L+    + +K   A
Sbjct: 440 MDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGT---LIIGYFKHEKASQA 496

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +W  +  K    ++  +   I  L   G   +A     +++++ ++P   T+  ++ G
Sbjct: 497 LRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHG 556



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 157/329 (47%), Gaps = 6/329 (1%)

Query: 158 WALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
           + L+EEM  R  KP  +T  V V    +      V K +  ++E    GC PD   +  L
Sbjct: 357 FKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEES---GCLPDIVTYNTL 413

Query: 216 LDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           +   CK   + EA +L DEM R+  K       ++L   C+E KL EA  +L   +  G+
Sbjct: 414 ISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGY 473

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
             D V Y  L+ GY +  K + A  L  EM+ K   P+  +Y  +I  LC+M K  +A  
Sbjct: 474 FVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAID 533

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              E+  SG   D +TY T+I G+C+  ++++ ++  + M+++   P+ +T   ++    
Sbjct: 534 KLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLC 593

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+  LE+ ++L       G   D  +YN +I   CK     EA ++  EME   L P   
Sbjct: 594 KEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCY 653

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++  ++ G    G + +A E+  ++  +G
Sbjct: 654 TYNAILGGLTDAGRMKDAEEFISKIAEKG 682



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 2/246 (0%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            ++++L + RK      L+   R+ +   +    +  L+  +       +A+ + DEM +
Sbjct: 447 TMLRALCRERKLDEAHDLLCSARR-RGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKE 505

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
               P    +  ++  LC+     +A    DE+ E    P    + ++++G+C+EG++ +
Sbjct: 506 KEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEK 565

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A     +M +  F+PD+V  N LL G  + G +  A +L      KG D +A SY  +I 
Sbjct: 566 AFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIIL 625

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           +LC+ ++  EA     EME      D  TY  ++ G   + ++    E +  + ++G   
Sbjct: 626 SLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSE 685

Query: 382 NQLTYL 387
           NQ   L
Sbjct: 686 NQFLEL 691


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 214/439 (48%), Gaps = 9/439 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L           ++++M +   KP +    ++  L++ +      + AIE+L 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVF---MYGTLIKAYVQESRYEMAIELLK 510

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M   G  PD F + CL+  LC+   V+EA  L  +M E+  KP+   + + +  + K G
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A+     M  +G  P+ V+Y  L+ G+  +G   +A    K M  KG  P+  +Y+
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYS 630

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I +L +  K +EA   F++  ++G   DV  Y +LISGFCK   I++  ++ D M+  
Sbjct: 631 AIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHN 690

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI PN + Y  ++    K  E+ +  EL  E+ +   VPDV  Y+ +I   CK G L EA
Sbjct: 691 GINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEA 750

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +++EM +  +SP    + +++ G   +G L +A   F E   +   S        +L+
Sbjct: 751 FKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK---SVGSLSAFNSLI 807

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +S  +  KV  A++++  +V K    N+  +TI I +      ++EA    LDM   +++
Sbjct: 808 DSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNII 867

Query: 558 PQPDTFAKLMRGLKKLYNR 576
           P   T+  L+    ++ NR
Sbjct: 868 PNTLTYTSLLLSYNQIGNR 886



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 221/452 (48%), Gaps = 12/452 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A I  L +    GAV   +E  ++  EK        + +L+  F   +  K+A  + +
Sbjct: 279 YNAFIGGLCQT---GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFE 335

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            MP  G  P+ F +  L+D   K  +++EA ++ DEM  R  K ++  + +++ G  K G
Sbjct: 336 SMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAG 395

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A  +  +M  AG EPD   YN L+ GY +   M  A ELL EM+ +   P+  +Y+
Sbjct: 396 EMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYS 455

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VLI  LC    +++AN    +M R+G + +V  Y TLI  + +  + +   E+L  MI  
Sbjct: 456 VLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIAN 515

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LP+   Y  +++   + +++EE   L+ +M + G  P+   Y   I L  K GE++ A
Sbjct: 516 GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVA 575

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              + +M ++ + P    + +++ G    G  +EA   FK M+ +GL+  P      A++
Sbjct: 576 ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLI--PDIRAYSAII 633

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +SL +  K + A  V+   +  G   +V+ +   I      G +++A     +M+   + 
Sbjct: 634 HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGIN 693

Query: 558 PQPDTFAKLMRGLKKLYN----RQIAAEITEK 585
           P    +  L+ GL KL      R++  EI EK
Sbjct: 694 PNIVVYNTLINGLCKLGEVTKARELFDEIEEK 725



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 212/448 (47%), Gaps = 7/448 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           Y  +IK+  K+        ++ EM KE KP L T   F+           V +A+EV   
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFI---GGLCQTGAVDEALEVKKL 301

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G  PD   +  L+D  CK    KEA  +F+ M      P+   +T+L+ G+ KEG 
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +  +M   G + ++V YN ++ G A+ G+M  A  L  EM   G +P+  +Y +
Sbjct: 362 IEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNL 421

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI    +   M +A     EM+         TY+ LISG C S  + +  E+LD MI+ G
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNG 481

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN   Y  ++ A+ ++   E  +EL+  M   G +PD+  YN +I   C+  +++EA 
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  +M    + P   ++   ++ +   G +  A  YFK+M+  G++  P       L+ 
Sbjct: 542 MLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIV--PNNVIYTILIK 599

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
                     A   + C++ KG   ++ A++  IHSL  NG  KEA    L  +   V+P
Sbjct: 600 GHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVP 659

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               +  L+ G  K  + + A+++ +++
Sbjct: 660 DVFLYNSLISGFCKEGDIEKASQLYDEM 687



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 185/390 (47%), Gaps = 2/390 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           LMR    A M+    +V   M +    PD + +  ++ A CK   V +   +  EM +  
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC 272

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KP+L  + + + G C+ G + EA  V   M + G  PD   Y  L+ G+ +  +  +A  
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           + + M   G +PN  +YT LI    +   +EEA R   EM   G + +VVTY  +I G  
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K+ ++ +   + + M+  G+ P+  TY  ++  + K  ++ +  EL+ EM+     P   
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPF 452

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            Y+V+I   C   +L++A  V ++M    + P    +  ++  ++ +     A E  K M
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           +  G+L  P       L+  L RA+KVE AK +   +  KG + N + +  +I+    +G
Sbjct: 513 IANGVL--PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            ++ A  Y  DM+ + ++P    +  L++G
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKG 600



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 157/295 (53%), Gaps = 2/295 (0%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           K+A+ V  +  K G  PD F++  L+   CK   +++A++L+DEM      P++  + +L
Sbjct: 643 KEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK G++ +A+ +  ++++    PD+V Y+ ++ GY + G +T+AF+L  EM  KG 
Sbjct: 703 INGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI 762

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+   Y +LI    +   +E+A   F E ++      +  + +LI  FCK  K+    E
Sbjct: 763 SPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARE 821

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M+ + + PN +TY  ++ A+ K E +EE  +L  +M     +P+   Y  ++    
Sbjct: 822 LFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYN 881

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           ++G   + ++++ +MEA  ++    ++ VM   +  +G  +EA +   + +  G+
Sbjct: 882 QIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGI 936



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 219/509 (43%), Gaps = 46/509 (9%)

Query: 123 RYYMWASKQ---PNYVHSYDVY------RALIKSLSKMRKFGAVWALMEEMRKEKPQLIT 173
            ++ W+S +   P Y+HSY +         LI     M        L + ++  KP L  
Sbjct: 105 NFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNM--------LEKLLQTRKPPLEI 156

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF- 232
            +  V   R F  + +                     VF   +D       + EA+ +F 
Sbjct: 157 LDSLVRCYREFGGSNLT--------------------VFDIFIDKFRVLGFLNEASSVFI 196

Query: 233 DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
             + E F P+L    +L+    K   +     V   M +A   PD+  Y N++  + ++G
Sbjct: 197 ASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVG 256

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
            +     +L EM ++ C PN  +Y   I  LC+   ++EA      M   G   D  TYT
Sbjct: 257 DVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYT 315

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            L+ GFCK ++      I +SM   G+ PN+ TY  ++    K+  +EE + +  EM   
Sbjct: 316 LLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITR 375

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G   +V  YN +I    K GE+ +A++++NEM  A L P T ++ +++ G+L    + +A
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKA 435

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
           CE   EM  R L  +P   T   L++ L  +  ++ A +V   ++  G + NV+ +   I
Sbjct: 436 CELLAEMKARKLTPSPF--TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLI 493

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---KKLYN-RQIAAEITEKVRK 588
            +       + A      M+   V+P    +  L+ GL   KK+   + +  ++ EK  K
Sbjct: 494 KAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553

Query: 589 MAAERQITF-KMYKRRGERDLKEKAKKQV 616
             A     F  +Y + GE  + E+  K +
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVAERYFKDM 582



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 162/342 (47%), Gaps = 7/342 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVLD 198
           Y A+I SLSK  K      +  +  K     +  +VF+   L+  F     ++KA ++ D
Sbjct: 629 YSAIIHSLSKNGKTKEAMGVFLKFLKTG---VVPDVFLYNSLISGFCKEGDIEKASQLYD 685

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+  V+  L++ LCK   V +A +LFDE+ E+   P +  +++++ G+CK G
Sbjct: 686 EMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSG 745

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA  +  +M   G  PD  +Y  L+ G  + G +  A  L  E ++K    + +++ 
Sbjct: 746 NLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFN 804

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI + C+  K+ EA   F +M       ++VTYT LI  + K+  ++   ++   M  R
Sbjct: 805 SLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR 864

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I+PN LTY  ++L++ +     + + L  +M   G   D   Y V+    CK G+  EA
Sbjct: 865 NIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEA 924

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
           + + N+     +    D F  ++     +  +    E   EM
Sbjct: 925 LKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM 966



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 9/283 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
            PN V    VY  LI  L K+ +      L +E+ ++   P ++T   +  ++  +  + 
Sbjct: 693 NPNIV----VYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVT---YSTIIDGYCKSG 745

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            + +A ++ DEM   G  PD +++  L+D   K  ++++A  LF E +++   SL  F S
Sbjct: 746 NLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNS 805

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  +CK GK++EA+ +   M D    P+IV Y  L+  Y +   M +A +L  +M  + 
Sbjct: 806 LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 865

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  +YT L+ +  ++    +    F +ME  G   D + Y  + S +CK  K     
Sbjct: 866 IIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEAL 925

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           ++L+  +  GI      +  ++    K++++   +EL+ EM K
Sbjct: 926 KLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGK 968



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 6/250 (2%)

Query: 110  VINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKE 167
            +I+ CG  GNL     ++   Q   V S   + +LI S  K  K      L ++M  +K 
Sbjct: 772  LIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKL 831

Query: 168  KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
             P ++T   + IL+  +  A M+++A ++  +M      P+   +  LL +  +  +  +
Sbjct: 832  TPNIVT---YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFK 888

Query: 228  AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
               LF +M  R        +  +   +CKEGK +EA  +L +    G + +  V++ L+ 
Sbjct: 889  MISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIF 948

Query: 287  GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
               +  +++   ELL EM ++    ++ +   L+    +    +EA++    M+R G   
Sbjct: 949  HLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008

Query: 347  DVVTYTTLIS 356
              ++ T  IS
Sbjct: 1009 TSLSLTDSIS 1018


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 215/443 (48%), Gaps = 8/443 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y ++I +L K +       ++  M K    +     +  ++  + S+   K
Sbjct: 232 PNVV----TYSSIIAALCKAQAMDKAMEVLTSMVKNGV-MPNCRTYNSIVHGYCSSGQPK 286

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +AI  L +M   G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+  +G LVE   +L  M   G  P+  V++ L+  YA+ GK+  A  +  +MR++G +
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  +I  LC+  ++E+A R F +M         + Y +LI   C   K D+  E+
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M+ RGI  + + +  I+ +H K+  + E  +L   M +IG  PD+  Y+ +I   C 
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCL 526

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++ EA  +   M +  + P   ++  +++G+     + +A   F+EM   G+  +P  
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDI 584

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   +L  L + ++   AK+++  I   G +L +  + I +H L  N    EA     +
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 551 MMDADVMPQPDTFAKLMRGLKKL 573
           +   D+  +  TF  ++  L K+
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKV 667



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 197/404 (48%), Gaps = 13/404 (3%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + IL++        ++A+E+L  MP  G  C PD   +  +++   K   + +A   + E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R   P++  ++S++   CK   + +A  VL  M   G  P+   YN+++ GY   G+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A   LK+M   G +P+  +Y  L+  LC+  +  EA + F  M + G + ++ TY T
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+     +   + +LD M++ GI PN   +  ++ A+ K+ ++++ + +  +MR+ G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-- 471
             PD   Y  VI + CK G +++A+  + +M    LSPG   +  ++H      C+ +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL----CIFDKW 460

Query: 472 --ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + ++  ++
Sbjct: 461 DKAKELILEMLDRGICLDTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             I      G + EA      M+   + P   T+  L+ G  K+
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 44/332 (13%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF IL+  +A    V +A+ V  +M + G  PD   +G ++  LCK+  V++A + F++M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 236 -RERFKP------SLRH-----------------------------FTSLLYGWCKEGKL 259
             ER  P      SL H                             F S++   CKEG++
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +E++ +   M   G +PDI+ Y+ L+ GY   GKM +A +LL  M   G  P+  +Y  L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C++ +ME+A   F EME SG   D++TY  ++ G  ++R+     E+   + + G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----NYNVVIRLACKLGELK 435
                TY  I+    K    +E + +   +    C+ D+      +N++I    K+G   
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKVGRND 671

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EA +++  + A  L P   ++ +M    + QG
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 1/286 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA E++ EM   G   D   F  ++D+ CK   V E+ KLFD M R   KP +  +++L+
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  GK+ EA  +L  M   G +PD V YN L++GY ++ +M DA  L +EM   G  
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y +++Q L +  +   A   +V +  SG + ++ TY  ++ G CK+   D    +
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             ++    +     T+  ++ A  K    +E  +L   +   G VPDV  Y+++     +
Sbjct: 642 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 701

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            G L+E  +++  ME    +  +     +V   L +G +  A  Y 
Sbjct: 702 QGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 42/331 (12%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC----------- 324
           P++  Y  L+      G++   F  L  + +KG   +A ++T L++ LC           
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 325 ---RMEKM----------------------EEANRAFVEMERSG--CEADVVTYTTLISG 357
              RM ++                      +EA      M   G  C  DVV+YTT+I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           F K   +D+ Y     M+ RGILPN +TY  I+ A  K + +++ +E++  M K G +P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              YN ++   C  G+ KEA+    +M +  + P   ++  ++      G   EA + F 
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 478 EMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M  RGL   P+  T   LL     +   VEM   +   +V  G   N Y ++I I +  
Sbjct: 329 SMTKRGL--KPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             G V +A      M    + P   T+  ++
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 121/274 (44%), Gaps = 41/274 (14%)

Query: 304 MRRKGCD---PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           M R G D   PN  +Y +LI + C   +++    A   + + G   D + +T L+ G C 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
            +   R  + +D +++R                               M ++GC+P+V +
Sbjct: 139 DK---RTSDAMDIVLRR-------------------------------MTQLGCIPNVFS 164

Query: 421 YNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
           YN++++  C     +EA+ +   M  +     P   S+  +++GF  +G L +A   + E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ RG+L  P   T  +++ +L +AQ ++ A +V + +V  G   N   +   +H   S+
Sbjct: 225 MLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G  KEA  +   M    V P   T+  LM  L K
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 215/446 (48%), Gaps = 8/446 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           ++ S  K  +FG V  ++ EM K    P ++T  V V    RF +   V+ A+ ++D M 
Sbjct: 165 MVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDA--RFRAGD-VEAAMALIDSMV 221

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260
             G +P    +  +L  L +N    +A ++F  M      P +R F  L+ G+C+ G+L 
Sbjct: 222 SKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELE 281

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA     +M+     PD+V ++ L+  + + G+M  A E L+EMR  G  P+   YT++I
Sbjct: 282 EALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVI 341

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              CR   M EA R   EM   GC  DVVTY TL++G CK R++    E+L+ M +RG+ 
Sbjct: 342 GGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVP 401

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  T+  ++  + +   +E+ ++    +      PD+  YN +I   C+ G+L +A  +
Sbjct: 402 PDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANEL 461

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           W++M +  + P   ++ +++     +G +  A  +  EMV +G++  P   T  +++   
Sbjct: 462 WDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIV--PNIMTYNSIIKGY 519

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            R+  V   +     +       ++  +   IH     G + EA +    M + +V P  
Sbjct: 520 CRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDA 579

Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKV 586
            T+  ++ G     N Q A  + +K+
Sbjct: 580 VTYNMIISGFSVHGNMQEADWVYKKM 605



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 166/310 (53%), Gaps = 1/310 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           ++ +++  F  A ++ +A+ V DEM  +GC PD   +  LL+ LCK   + +A +L +EM
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM 395

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +ER   P L  FT+L++G+C++G + +A      + D    PDIV YN L+ G  + G +
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDL 455

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A EL  +M  +   PN  +Y++LI + C   +++ A     EM   G   +++TY ++
Sbjct: 456 GKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSI 515

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I G+C+S  + +  + L  M    ++P+ +TY  ++  + K+ ++ E   L+  M     
Sbjct: 516 IKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENV 575

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD   YN++I      G ++EA  V+ +M A  + P   +++ M++G +  G   ++ +
Sbjct: 576 QPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQ 635

Query: 475 YFKEMVGRGL 484
              EM+ +GL
Sbjct: 636 LHDEMLQKGL 645



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 179/363 (49%), Gaps = 10/363 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI    +  +        +EMR  +  P +++   F  L+  F     +  A E L 
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVS---FSCLIGLFTRRGEMDHAAEYLR 323

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLLYGWCKE 256
           EM ++G  PD  ++  ++   C+   + EA ++ DEM   F   P +  + +LL G CKE
Sbjct: 324 EMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVA-FGCLPDVVTYNTLLNGLCKE 382

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +L +A+ +L +MK+ G  PD+  +  L+ GY + G +  A +    +  +   P+  +Y
Sbjct: 383 RRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTY 442

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI  +CR   + +AN  + +M       + VTY+ LI   C+  ++D  +  LD M+ 
Sbjct: 443 NTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVN 502

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI+PN +TY  I+  + +   + +  + + +MR    +PD+  YN +I    K G++ E
Sbjct: 503 KGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHE 562

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A N+   ME  ++ P   ++ +++ GF   G + EA   +K+M  RG+   P   T  ++
Sbjct: 563 AFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGI--EPDRYTYMSM 620

Query: 497 LNS 499
           +N 
Sbjct: 621 ING 623



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 180/383 (46%), Gaps = 3/383 (0%)

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
           E + +    ++ + CK     E   +  EM +R   P +     ++    + G +  A  
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           ++  M   G +P +V YN++L G  + G+   A E+ + M   G  P+  S+ +LI   C
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           R  ++EEA R + EM       DVV+++ LI  F +  ++D   E L  M + G++P+ +
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGV 335

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
            Y  ++    +   + E + +  EM   GC+PDV  YN ++   CK   L +A  + NEM
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM 395

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           +   + P   +F  ++HG+   G + +A ++F  +  + L   P   T   L++ + R  
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL--RPDIVTYNTLIDGMCRQG 453

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
            +  A ++W  + ++    N   ++I I S    G V  A ++  +M++  ++P   T+ 
Sbjct: 454 DLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYN 513

Query: 565 KLMRGLKKLYNRQIAAEITEKVR 587
            +++G  +  N     +   K+R
Sbjct: 514 SIIKGYCRSGNVSKGQQFLPKMR 536



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 6/281 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+  L K R+      L+ EM  R   P L T   F  L+  +     ++KA++  
Sbjct: 371 TYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCT---FTTLIHGYCRDGNIEKALQFF 427

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           D +      PD   +  L+D +C+   + +A +L+D+M  R   P+   ++ L+   C++
Sbjct: 428 DTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEK 487

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++  A   L +M + G  P+I+ YN+++ GY + G ++   + L +MR     P+  +Y
Sbjct: 488 GQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITY 547

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI    +  KM EA      ME    + D VTY  +ISGF     +     +   M  
Sbjct: 548 NTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGA 607

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           RGI P++ TY+ ++  H      ++  +L  EM + G  PD
Sbjct: 608 RGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 148/319 (46%), Gaps = 7/319 (2%)

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           GW     L    Y LV   ++  E +    N ++  Y +  +  +   ++ EM ++   P
Sbjct: 138 GW---PHLTADAYRLVLSSNS--EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFP 192

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  ++ V++ A  R   +E A      M   G +  +VTY +++ G  ++ + D+  E+ 
Sbjct: 193 DVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVF 252

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
            +M   G+ P+  ++  ++    +  ELEE +    EMR     PDV +++ +I L  + 
Sbjct: 253 RAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRR 312

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           GE+  A     EM    L P    + +++ GF   G ++EA     EMV  G L  P   
Sbjct: 313 GEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCL--PDVV 370

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   LLN L + +++  A+++ + +  +G   ++  +T  IH    +G++++A  +   +
Sbjct: 371 TYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTI 430

Query: 552 MDADVMPQPDTFAKLMRGL 570
            D  + P   T+  L+ G+
Sbjct: 431 SDQRLRPDIVTYNTLIDGM 449


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 215/443 (48%), Gaps = 8/443 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y ++I +L K +       ++  M K    +     +  ++  + S+   K
Sbjct: 232 PNVV----TYSSIIAALCKAQAMDKAMEVLTSMVKNGV-MPNCRTYNSIVHGYCSSGQPK 286

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +AI  L +M   G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+  +G LVE   +L  M   G  P+  V++ L+  YA+ GK+  A  +  +MR++G +
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  +I  LC+  ++E+A R F +M         + Y +LI   C   K D+  E+
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M+ RGI  + + +  I+ +H K+  + E  +L   M +IG  PD+  Y+ +I   C 
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCL 526

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++ EA  +   M +  + P   ++  +++G+     + +A   F+EM   G+  +P  
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDI 584

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   +L  L + ++   AK+++  I   G +L +  + I +H L  N    EA     +
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 551 MMDADVMPQPDTFAKLMRGLKKL 573
           +   D+  +  TF  ++  L K+
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKV 667



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 197/404 (48%), Gaps = 13/404 (3%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + IL++        ++A+E+L  MP  G  C PD   +  +++   K   + +A   + E
Sbjct: 165 YNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R   P++  ++S++   CK   + +A  VL  M   G  P+   YN+++ GY   G+
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A   LK+M   G +P+  +Y  L+  LC+  +  EA + F  M + G + ++ TY T
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+     +   + +LD M++ GI PN   +  ++ A+ K+ ++++ + +  +MR+ G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-- 471
             PD   Y  VI + CK G +++A+  + +M    LSPG   +  ++H      C+ +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL----CIFDKW 460

Query: 472 --ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + ++  ++
Sbjct: 461 DKAKELILEMLDRGICLDTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 518

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             I      G + EA      M+   + P   T+  L+ G  K+
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 44/332 (13%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF IL+  +A    V +A+ V  +M + G  PD   +G ++  LCK+  V++A + F++M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 236 -RERFKP------SLRH-----------------------------FTSLLYGWCKEGKL 259
             ER  P      SL H                             F S++   CKEG++
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +E++ +   M   G +PDI+ Y+ L+ GY   GKM +A +LL  M   G  P+  +Y  L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C++ +ME+A   F EME SG   D++TY  ++ G  ++R+     E+   + + G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----NYNVVIRLACKLGELK 435
                TY  I+    K    +E + +   +    C+ D+      +N++I    K+G   
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKVGRND 671

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EA +++  + A  L P   ++ +M    + QG
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 1/286 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA E++ EM   G   D   F  ++D+ CK   V E+ KLFD M R   KP +  +++L+
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  GK+ EA  +L  M   G +PD V YN L++GY ++ +M DA  L +EM   G  
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y +++Q L +  +   A   +V +  SG + ++ TY  ++ G CK+   D    +
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             ++    +     T+  ++ A  K    +E  +L   +   G VPDV  Y+++     +
Sbjct: 642 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 701

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            G L+E  +++  ME    +  +     +V   L +G +  A  Y 
Sbjct: 702 QGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 42/331 (12%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC----------- 324
           P++  Y  L+      G++   F  L  + +KG   +A ++T +++ LC           
Sbjct: 89  PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDI 148

Query: 325 ---RMEKM----------------------EEANRAFVEMERSG--CEADVVTYTTLISG 357
              RM ++                      +EA      M   G  C  DVV+YTT+I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           F K   +D+ Y     M+ RGILPN +TY  I+ A  K + +++ +E++  M K G +P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              YN ++   C  G+ KEA+    +M +  + P   ++  ++      G   EA + F 
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 478 EMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M  RGL   P+  T   LL     +   VEM   +   +V  G   N Y ++I I +  
Sbjct: 329 SMTKRGL--KPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             G V +A      M    + P   T+  ++
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 135/283 (47%), Gaps = 9/283 (3%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE---ADVVTYT 352
           DA  +  E+ R+G   +       +  + R       +R +  M R+G +    ++ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSR-YNRMARAGADEVTPNLCTYG 95

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL-MGEMRK 411
            L+   C + ++D  +  L ++I++G + + + +  ++      +   + +++ +  M +
Sbjct: 96  ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCL 469
           +GC+P+V +YN++++  C     +EA+ +   M  +     P   S+  +++GF  +G L
Sbjct: 156 LGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A   + EM+ RG+L  P   T  +++ +L +AQ ++ A +V + +V  G   N   + 
Sbjct: 216 DKAYGTYHEMLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +H   S+G  KEA  +   M    V P   T+  LM  L K
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 218/465 (46%), Gaps = 31/465 (6%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYV-----HSYDVYRALIKS--LSKMRKF 154
           +R  L E+  +R G++G  G+R      +  +Y       + D++  +++S  L  +  F
Sbjct: 27  IRHALAEK--SRDGESGEAGFRGESLKLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDF 84

Query: 155 GAVWALMEEMRKEKPQLITT--------------EVFVILMRRFASARMVKKAIEVLDEM 200
             +   +  +R E+P L+ +                F IL++ F S   +  A+    ++
Sbjct: 85  NKLMGAV--VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKL 142

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
            K G  PD   F  LL  LC +  V EA  LF ++    +P +  FT+L+ G C+EG++V
Sbjct: 143 TKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---CRPDVLTFTTLMNGLCREGRVV 199

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR-KGCDPNANSYTVL 319
           EA  +L +M + G +PD + Y   + G  +MG    A  LL++M       PN   Y+ +
Sbjct: 200 EAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAI 259

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+  +  +++  F+EM+  G   ++VTY  +I GFC S +      +L  M++R I
Sbjct: 260 IDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKI 319

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +TY  ++ A  K+ +  E  EL  EM   G +P+   YN +I   CK   L  A +
Sbjct: 320 SPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 379

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  M     SP   +F  ++ G+ G   + +  E   EM  RGL++     T   L++ 
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV--TYNTLIHG 437

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                 +  A D+   +++ G   ++      +  L  NG +K+A
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 482



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 198/413 (47%), Gaps = 14/413 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   F  LM        V +A+ +LD M + G +PD+  +G  +D +CK      
Sbjct: 179 RPDVLT---FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVS 235

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E    KP++  +++++ G CK+G+  ++  + ++M+D G  P+IV YN ++
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   G+ + A  LL+EM  +   PN  +Y  LI A  +  K  EA   + EM   G  
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            + +TY ++I GFCK  ++D   ++   M  +G  P+  T+  ++  +   + +++ +EL
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + EM + G V +   YN +I   C +G+L  A+++  +M ++ + P   +   ++ G   
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 466 QGCLIEACEYFKEMVGRGL-LSA--------PQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            G L +A E FK M    + L A        P   T   L+  L+   K   A++++  +
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +G   +   ++  I  L     + EA    + M      P   TF  L+ G
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 180/392 (45%), Gaps = 23/392 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y  +I       ++ A   L++EM  RK  P ++T   +  L+  F     
Sbjct: 286 PNIV----TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVT---YNALINAFVKEGK 338

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
             +A E+ DEM   G  P+   +  ++D  CK   +  A  +F  M  +   P +  FT+
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C   ++ +   +L +M   G   + V YN L+ G+  +G +  A +L ++M   G
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 458

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISG 357
             P+  +   L+  LC   K+++A   F  M++S           G E DV+TY  LI G
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 518

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
                K     E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P+
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +N +I   CK G + + + ++ EM    +      ++ +++GF   G +  A + F+
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 638

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           EM+  G+   P   T++ +L      +++E A
Sbjct: 639 EMISSGVY--PDTITIRNMLTGFWSKEELERA 668



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 182/399 (45%), Gaps = 8/399 (2%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           ++ AI++  +M +    P    F  L+ A+ +         L+ +M R++ +  +  FT 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  +C   KL  A     ++   G  PD+V +  LL G     ++++A +L  ++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  ++T L+  LCR  ++ EA      M  +G + D +TY T + G CK        
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 369 EILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            +L  M +   I PN + Y  I+    K     +   L  EM+  G  P++  YN +I  
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C  G    A  +  EM    +SP   ++  +++ F+ +G   EA E + EM+ RG++  
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII-- 355

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T  ++++   +  +++ A+D++  + TKGC  +V+ +T  I        + +    
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +M    ++    T+  L+ G   + +   A ++++++
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 454



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 152/330 (46%), Gaps = 21/330 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P + T   F  L+  +  A+ 
Sbjct: 356 PNTI----TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT---FTTLIDGYCGAKR 408

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EMP+ G   +   +  L+   C    +  A  L  +M      P +    +
Sbjct: 409 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD++ YN L+ G    GK  +A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + FV M       +VVT+ TLI+G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ + + Y+ ++    K   +   +++  EM   G  PD
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPD 648

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
                 ++       EL+ AV +  +++ +
Sbjct: 649 TITIRNMLTGFWSKEELERAVAMLEDLQMS 678


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 183/350 (52%), Gaps = 6/350 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY  LI    K+          +EM  +K  P  IT   +  L++ F     V +   + 
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYIT---YTTLIQGFGQGGKVIEPQNLF 421

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM   G +PDE  +  L+D  CK   +  A  L +EM +    P++  + +L+ G CK 
Sbjct: 422 HEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+L  A  +L +M+  G + ++ +YN++++G  + G +  A +L+KEM   G DP+A +Y
Sbjct: 482 GELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY 541

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T +I A CR+  +++A++   EM   G +  VVT+  L++GFC    ++    +L  M++
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI+P+ +TY  +M  H  +  +    ++   MR  G  PD + YN++I+  CK   LKE
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           A  ++ EM      P   S+  ++  F  +  ++EA E F+EM G GL++
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVA 711



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 190/398 (47%), Gaps = 3/398 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
            T  + I++        VK+A  +L +M      PD   +  ++D  C    +K+A KL 
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLM 316

Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           D+M+ +  KP+   + S++   CK GK  EA+ VL +M      PD VVY  L+ G+ ++
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKL 376

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G +  A +   EM  K   P+  +YT LIQ   +  K+ E    F EM   G + D VTY
Sbjct: 377 GHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTY 436

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           TTLI  +CK+ ++   + + + M+Q G+ PN +TY  ++    K  EL+   EL+ EMRK
Sbjct: 437 TTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   +V  YN ++   CK G +++A+ +  EME A + P   ++  ++  +   G + +
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDK 556

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A +  +EM+ RGL   P   T   L+N       +E    +   ++ KG   +   +   
Sbjct: 557 AHKLLQEMLDRGL--QPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +        +         M +  V P  +T+  L++G
Sbjct: 615 MKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG 652



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 45/350 (12%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           P+Y+     Y  LI+   +  K      L  EM  R  KP  +T   +  L+  +  A  
Sbjct: 396 PDYI----TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVT---YTTLIDVYCKAGE 448

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +  A  + +EM + G  P+   +G L+D LCK+  +  A +L DEMR++  + ++  + S
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK G + +A  ++ +M+ AG +PD + Y  ++  Y ++G +  A +LL+EM  +G
Sbjct: 509 MVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRG 568

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL-------------- 354
             P   ++ VL+   C +  +E+ +R    M   G   D +TY TL              
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 355 ---------------------ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
                                I G CK+R +   + +   MI++G +P   +Y  ++   
Sbjct: 629 KIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            KK+++ E  EL  EMR  G V D   YN  + +  + G+++  +N+ +E
Sbjct: 689 YKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDE 738



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 161/345 (46%), Gaps = 37/345 (10%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL-LKEMRRKGCDPNANS 315
           G L EA+ +L ++   G    +   N  LS   ++   ++  E+ +K     G   N  S
Sbjct: 204 GHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGIEMAIKVFCEYGISWNTTS 260

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y ++I +LCR+ K++EA+R  ++M+      DVV+Y+T+I G+C   ++ +  +++D M 
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G+ PN+ TY  I+L   K  +  E  +++ EM     +PD   Y  +I    KLG ++
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--------- 486
            A   ++EM +  +SP   ++  ++ GF   G +IE    F EM+ RGL           
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 487 ------------------------APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                                    P   T  AL++ L +  +++ A ++   +  KG +
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           LNV  +   ++ +   G++++A     +M  A + P   T+  ++
Sbjct: 501 LNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + Y  LIK   K R     W L +EM  EK  + T   +  L++RF   + + +A E+ +
Sbjct: 644 NTYNILIKGHCKARNLKEAWFLYKEM-IEKGYVPTVTSYNALIKRFYKKKKILEARELFE 702

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           EM  +G   D  ++   +D   +   V+    L DE  E+
Sbjct: 703 EMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 218/465 (46%), Gaps = 31/465 (6%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYV-----HSYDVYRALIKS--LSKMRKF 154
           +R  L E+  +R G++G  G+R      +  +Y       + D++  +++S  L  +  F
Sbjct: 27  IRHALAEK--SRDGESGEAGFRGESLKLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDF 84

Query: 155 GAVWALMEEMRKEKPQLITT--------------EVFVILMRRFASARMVKKAIEVLDEM 200
             +   +  +R E+P L+ +                F IL++ F S   +  A+    ++
Sbjct: 85  NKLMGAV--VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKL 142

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
            K G  PD   F  LL  LC +  V EA  LF ++    +P +  FT+L+ G C+EG++V
Sbjct: 143 TKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---CRPDVLTFTTLMNGLCREGRVV 199

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR-KGCDPNANSYTVL 319
           EA  +L +M + G +PD + Y   + G  +MG    A  LL++M       PN   Y+ +
Sbjct: 200 EAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAI 259

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+  +  +++  F+EM+  G   ++VTY  +I GFC S +      +L  M++R I
Sbjct: 260 IDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKI 319

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +TY  ++ A  K+ +  E  EL  EM   G +P+   YN +I   CK   L  A +
Sbjct: 320 SPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 379

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  M     SP   +F  ++ G+ G   + +  E   EM  RGL++     T   L++ 
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV--TYNTLIHG 437

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                 +  A D+   +++ G   ++      +  L  NG +K+A
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 482



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 198/413 (47%), Gaps = 14/413 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   F  LM        V +A+ +LD M + G +PD+  +G  +D +CK      
Sbjct: 179 RPDVLT---FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVS 235

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E    KP++  +++++ G CK+G+  ++  + ++M+D G  P+IV YN ++
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   G+ + A  LL+EM  +   PN  +Y  LI A  +  K  EA   + EM   G  
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            + +TY ++I GFCK  ++D   ++   M  +G  P+  T+  ++  +   + +++ +EL
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + EM + G V +   YN +I   C +G+L  A+++  +M ++ + P   +   ++ G   
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 466 QGCLIEACEYFKEMVGRGL-LSA--------PQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            G L +A E FK M    + L A        P   T   L+  L+   K   A++++  +
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +G   +   ++  I  L     + EA    + M      P   TF  L+ G
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 180/392 (45%), Gaps = 23/392 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y  +I       ++ A   L++EM  RK  P ++T   +  L+  F     
Sbjct: 286 PNIV----TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVT---YNALINAFVKEGK 338

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
             +A E+ DEM   G  P+   +  ++D  CK   +  A  +F  M  +   P +  FT+
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C   ++ +   +L +M   G   + V YN L+ G+  +G +  A +L ++M   G
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 458

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISG 357
             P+  +   L+  LC   K+++A   F  M++S           G E DV+TY  LI G
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 518

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
                K     E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P+
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +N +I   CK G + + + ++ EM    +      ++ +++GF   G +  A + F+
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 638

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           EM+  G+   P   T++ +L      +++E A
Sbjct: 639 EMISSGVY--PDTITIRNMLTGFWSKEELERA 668



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 182/399 (45%), Gaps = 8/399 (2%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           ++ AI++  +M +    P    F  L+ A+ +         L+ +M R++ +  +  FT 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  +C   KL  A     ++   G  PD+V +  LL G     ++++A +L  ++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  ++T L+  LCR  ++ EA      M  +G + D +TY T + G CK        
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 369 EILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            +L  M +   I PN + Y  I+    K     +   L  EM+  G  P++  YN +I  
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C  G    A  +  EM    +SP   ++  +++ F+ +G   EA E + EM+ RG++  
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII-- 355

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T  ++++   +  +++ A+D++  + TKGC  +V+ +T  I        + +    
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +M    ++    T+  L+ G   + +   A ++++++
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 454



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 21/328 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P + T   F  L+  +  A+ 
Sbjct: 356 PNTI----TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT---FTTLIDGYCGAKR 408

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EMP+ G   +   +  L+   C    +  A  L  +M      P +    +
Sbjct: 409 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD++ YN L+ G    GK  +A
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + FV M       +VVT+ TLI+G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ + + Y+ ++    K   +   +++  EM   G  PD
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPD 648

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEME 445
                 ++       EL+ AV +  +++
Sbjct: 649 TITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 141/302 (46%), Gaps = 19/302 (6%)

Query: 124 YYMWASK--QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           +Y+ A+K   P+       +  LI      ++      L+ EM + +  +  T  +  L+
Sbjct: 381 FYLMATKGCSPDVF----TFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNTLI 435

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--- 238
             F     +  A+++  +M   G  PD      LLD LC N  +K+A ++F  M++    
Sbjct: 436 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 495

Query: 239 ---------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
                     +P +  +  L+ G   EGK +EA+ +  +M   G  PD + Y++++ G  
Sbjct: 496 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           +  ++ +A ++   M  K   PN  ++  LI   C+  ++++    F EM R G  AD +
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            Y TLI GF K   I+   +I   MI  G+ P+ +T  +++     KEELE  V ++ ++
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675

Query: 410 RK 411
           ++
Sbjct: 676 QR 677


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 195/391 (49%), Gaps = 3/391 (0%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           +  A M+  A  V   MP  GC    F +  LL  L     V+EA  +F  MR +   P 
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + ++++G C+ G+  EA+ +L +    GFEP+IVVYN L+ GY   G+M  A ++ +
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M    C PN  +YT LI  LC+  K+E A   F  M  +G E +VVTYT LI G C   
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +   + +L  M   G++PN  T+  ++ A  K+E++EE    +G + K G   +   Y 
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I   CK G++  A  +  +M +    P   S+  ++ G   Q  L +A    ++M+ +
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+ ++P   T   +++ L+R    E  K ++  ++  G   ++  +T+++ S    G ++
Sbjct: 417 GIQASPV--TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +A S  + M+D  V P   T+  L+RG   L
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANL 505



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 190/405 (46%), Gaps = 42/405 (10%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G EP+  V+  L+D  C    ++ A K+F+ M   R  P++R +T L++G CK GK+  A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +  +M +AG EP++V Y  L+ G    G +  AF LL  M   G  PN  +++VLI A
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDA 326

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+ EK+EEA      + + G + + V YT+LI G CK+ KID   E++  MI  G +P+
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPD 386

Query: 383 QLTYLHIM--LAHEKKEE-----LEECVE----------------------------LMG 407
             +Y  ++  L  +KK       LE+ +E                            +  
Sbjct: 387 AHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFD 446

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M   G  PD+  Y V +R  C+ G +++A ++  +M    + P   ++  ++ G+   G
Sbjct: 447 KMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY- 526
            + +A   F+ MVG+G    P   +   LL  +++    + + D+W     K  + + Y 
Sbjct: 507 LVSQAFSTFEVMVGKGW--KPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYD 564

Query: 527 --AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
              W I I+ L   G V E  S    M +    P  +T   ++ G
Sbjct: 565 EIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS-NTINAMITG 608



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 10/405 (2%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           LL AL ++    +   L   M  R   +LR +T+L+  +C  G +  AK  L  +  AG 
Sbjct: 47  LLMALARHRMFPDMESLASRMPAR---NLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGL 103

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD   Y + + GY + G +T A  +   M  +GC   A +YT L+  L     + EA  
Sbjct: 104 APDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMA 163

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            FV M    C  D   Y T++ G C++ + +    +L+  +  G  PN + Y  ++  + 
Sbjct: 164 VFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYC 223

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
              E+E  +++   M    C P+V  Y  +I   CK G+++ A+ +++ M  A L P   
Sbjct: 224 NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVV 283

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ G   +G L  A      M   GL+  P   T   L+++L + +KVE A+    
Sbjct: 284 TYTALIQGQCNEGHLQCAFRLLHLMETNGLV--PNDWTFSVLIDALCKREKVEEAQLFLG 341

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---K 571
            +V KG ++N   +T  I  L   G +  A      M+    +P   +++ L+ GL   K
Sbjct: 342 SLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401

Query: 572 KLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQV 616
           KL    +  E  + + K      +T+ +      R++  +  K++
Sbjct: 402 KLSQATLMLE--DMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 10/333 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN V    VY ALI       +      + E M   +  P + T   +  L+     + 
Sbjct: 209 EPNIV----VYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRT---YTELIHGLCKSG 261

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V++A+ +   M + G EP+   +  L+   C    ++ A +L   M      P+   F+
Sbjct: 262 KVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFS 321

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+   CK  K+ EA+  L  +   G + + VVY +L+ G  + GK+  A EL+++M  +
Sbjct: 322 VLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISE 381

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+A+SY+ LI  LCR +K+ +A     +M   G +A  VTYT +I    +    +  
Sbjct: 382 GFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGP 441

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            +I D MI  GI P+ +TY   + ++ ++  +E+   ++ +M   G  P++  YN +IR 
Sbjct: 442 KKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
              LG + +A + +  M      P  DS+ V++
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 205/414 (49%), Gaps = 23/414 (5%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           + + +   L + +++R  D        + WA  +  Y H+ + Y  ++  L K+++   +
Sbjct: 72  NAIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKM 131

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
            ALMEEMR+    L+        MRR A A   + A+ V D++  +  E +      LLD
Sbjct: 132 RALMEEMRQ--GNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLD 189

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   V++A  +F E++    P+   F   ++GWCK  ++ EA++ + +MK  G  P 
Sbjct: 190 TLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPC 249

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y+ ++  Y +       +ELL +M+ +GC PN  +YT ++ +L ++E+ EEA +   
Sbjct: 250 VISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAE 309

Query: 338 EMERSGCEADVVTYTTLISGFCKS---RKIDRCYEILDSMIQRGILPNQLTY--LHIMLA 392
            M   GC+ D + Y  LI    ++   R+  R +E+   M + G+ PN  TY  +  M  
Sbjct: 310 RMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEV--EMPKTGVPPNTSTYNSMIAMFC 367

Query: 393 HEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLS 450
           H  +E  ++ + L+ E+     C PD+  Y  V++   K G++    N  ++M     LS
Sbjct: 368 HHSQE--QKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLS 425

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEY----FKEMVGRGLLSAPQYGTLKALLNSL 500
               ++ +++HG     C    CE+    F+EMVG+ +   P+Y T   LL+ +
Sbjct: 426 LDVSAYTLLIHGL----CRANKCEWGYNLFEEMVGKAI--TPRYKTCALLLDEI 473



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/382 (19%), Positives = 155/382 (40%), Gaps = 63/382 (16%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           ++  I+++    + G   DE     + D  C  +++  +  L D +  RFK   +    L
Sbjct: 41  IRSQIDIIVSRIREGSSDDEVFKSLVHDEAC--NAIPMSQNLVDVLLHRFKDDWKSALGL 98

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
            + W  E +L             G+E     Y+ ++    ++ ++     L++EMR+   
Sbjct: 99  -FRW-AESRL-------------GYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQG-- 141

Query: 310 DPNANSYTVLIQALCRME---KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
             N    + + +A+ R+    + E+A R F ++     E +  +   L+   CK RK+++
Sbjct: 142 --NLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQ 199

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              I   + +  I PN  T+   +    K   ++E    + EM+  GC P V +Y+ +I+
Sbjct: 200 ARAIFLEL-KPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQ 258

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C+    ++   + ++M+A                   QGC                  
Sbjct: 259 SYCRQSNFRKVYELLDDMQA-------------------QGC------------------ 281

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           AP   T   ++ SL + ++ E A  +   + + GC+ +   +   IH+L   G ++EA  
Sbjct: 282 APNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVR 341

Query: 547 -YCLDMMDADVMPQPDTFAKLM 567
            + ++M    V P   T+  ++
Sbjct: 342 VFEVEMPKTGVPPNTSTYNSMI 363



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 88/203 (43%), Gaps = 4/203 (1%)

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K +++++   LM EMR+ G +  +S     +R     GE ++AV V++++    L   T+
Sbjct: 124 KLKQVDKMRALMEEMRQ-GNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTE 182

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           S  +++     +  + +A   F E+       +P   T    ++   +A +V+ A+    
Sbjct: 183 SMNLLLDTLCKERKVEQARAIFLELKPH---ISPNTHTFNIFIHGWCKANRVDEAEWTIQ 239

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            +   GC   V +++  I S     + ++      DM      P   T+  +M  L K+ 
Sbjct: 240 EMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVE 299

Query: 575 NRQIAAEITEKVRKMAAERQITF 597
             + A +I E++R +  +    F
Sbjct: 300 QFEEALQIAERMRSVGCKPDTLF 322


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 195/391 (49%), Gaps = 3/391 (0%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           +  A M+  A  V   MP  GC    F +  LL  L     V+EA  +F  MR +   P 
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + ++++G C+ G+  EA+ +L +    GFEP+IVVYN L+ GY   G+M  A ++ +
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M    C PN  +YT LI  LC+  K+E A   F  M  +G E +VVTYT LI G C   
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +   + +L  M   G++PN  T+  ++ A  K+E++EE    +G + K G   +   Y 
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I   CK G++  A  +  +M +    P   S+  ++ G   Q  L +A    ++M+ +
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+ ++P   T   +++ L+R    E  K ++  ++  G   ++  +T+++ S    G ++
Sbjct: 417 GIQASPV--TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +A S  + M+D  V P   T+  L+RG   L
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANL 505



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 193/412 (46%), Gaps = 50/412 (12%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G EP+  V+  L+D  C    ++ A K+F+ M   R  P++R +T L++G CK GK+  A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +  +M +AG EP++V Y  L+ G    G +  AF LL  M   G  PN  +++VLI A
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDA 326

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+ EK+EEA      + + G + + V YT+LI G CK+ KID   E++  MI  G +P+
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPD 386

Query: 383 QLTYLHIM--LAHEKKEE-----LEECVE----------------------------LMG 407
             +Y  ++  L  +KK       LE+ +E                            +  
Sbjct: 387 AHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFD 446

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M   G  PD+  Y V +R  C+ G +++A ++  +M    + P   ++  ++ G+   G
Sbjct: 447 KMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC------------ 515
            + +A   F+ MVG+G    P   +   LL  +++    + + D+W              
Sbjct: 507 LVSQAFSTFEVMVGKGW--KPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLED 564

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           I  +   L    ++ +I  L     ++EA  + + M +A++ P  D +  ++
Sbjct: 565 ITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSII 616



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 10/405 (2%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           LL AL ++    +   L   M  R   +LR +T+L+  +C  G +  AK  L  +  AG 
Sbjct: 47  LLMALARHRMFPDMESLASRMPAR---NLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGL 103

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD   Y + + GY + G +T A  +   M  +GC   A +YT L+  L     + EA  
Sbjct: 104 APDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMA 163

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            FV M    C  D   Y T++ G C++ + +    +L+  +  G  PN + Y  ++  + 
Sbjct: 164 VFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYC 223

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
              E+E  +++   M    C P+V  Y  +I   CK G+++ A+ +++ M  A L P   
Sbjct: 224 NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVV 283

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ G   +G L  A      M   GL+  P   T   L+++L + +KVE A+    
Sbjct: 284 TYTALIQGQCNEGHLQCAFRLLHLMETNGLV--PNDWTFSVLIDALCKREKVEEAQLFLG 341

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---K 571
            +V KG ++N   +T  I  L   G +  A      M+    +P   +++ L+ GL   K
Sbjct: 342 SLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401

Query: 572 KLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQV 616
           KL    +  E  + + K      +T+ +      R++  +  K++
Sbjct: 402 KLSQATLMLE--DMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 194/456 (42%), Gaps = 55/456 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K  K      L   M +   +P ++T   +  L++   +   ++ A  +L 
Sbjct: 250 YTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVT---YTALIQGQCNEGHLQCAFRLLH 306

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M   G  P+++ F  L+DALCK   V+EA      + ++  K +   +TSL+ G CK G
Sbjct: 307 LMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTG 366

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+  A  ++ +M   GF PD   Y++L+ G  +  K++ A  +L++M  KG   +  +YT
Sbjct: 367 KIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYT 426

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  L R    E   + F +M  +G   D+VTYT  +  +C+  +++    ++  M+ R
Sbjct: 427 IIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDR 486

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA--------- 428
           G+ PN +TY  ++  +     + +       M   G  P+  +Y V++RL          
Sbjct: 487 GVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNS 546

Query: 429 --------------------------------------CKLGELKEAVNVWNEMEAASLS 450
                                                 C++  L+EA + +  M+ A+L+
Sbjct: 547 VDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLT 606

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P  D +  ++        L +A      M   G L  P   + + +++SL        AK
Sbjct: 607 PSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYL--PHLESYRIIISSLCEGGNFRTAK 664

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +V+  ++ K    +   W I I+ L   G V E  S
Sbjct: 665 EVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSS 700



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 16/228 (7%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS---- 224
           P L+T   +  L+R +A+  +V +A    + M   G +P+E  +  LL  + K SS    
Sbjct: 490 PNLVT---YNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNS 546

Query: 225 --------VKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
                   +K+   L +++ ER  P +   ++  +   C+  +L EAK+  + M++A   
Sbjct: 547 VDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLT 606

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P   VY +++    ++  +TDA  LL  M + G  P+  SY ++I +LC       A   
Sbjct: 607 PSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEV 666

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           F ++       D + +  LI G  +   +     +L  M + G  P+ 
Sbjct: 667 FGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSN 714



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/334 (17%), Positives = 128/334 (38%), Gaps = 53/334 (15%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL--ITTEVFVILMRRFASARMV 190
            +V     Y +LI  L + +K      ++E+M ++  Q   +T  + +  + R   +   
Sbjct: 382 GFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGP 441

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           KK   + D+M   G  PD   +   + + C+   +++A  +  +M +R   P+L  + +L
Sbjct: 442 KK---IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTL 498

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEP--------------------------------- 276
           + G+   G + +A      M   G++P                                 
Sbjct: 499 IRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDL 558

Query: 277 -----DIV---------VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
                DI          +Y+  +    ++ ++ +A      M+     P+ + YT +I  
Sbjct: 559 QVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDC 618

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            CR++ + +A      M +SG    + +Y  +IS  C+        E+   ++ +    +
Sbjct: 619 CCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYD 678

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           ++ +  ++    +K  + E   L+  M++ G  P
Sbjct: 679 EIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQP 712


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 211/429 (49%), Gaps = 5/429 (1%)

Query: 160  LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            L +EM K K  L   + + IL+     AR    AI++ ++M K  C+ D F +G ++DAL
Sbjct: 1038 LFDEMTK-KGLLGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDAL 1095

Query: 220  CKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
            CK+    EA  +F EM      P +  ++SL+ G C+ G+L EA     +M+  G   D+
Sbjct: 1096 CKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADV 1155

Query: 279  VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
              YN+L+ G ++ G   +    L  M  +G  P+A ++T+LI  LC+  K+ EA +    
Sbjct: 1156 YTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILEL 1215

Query: 339  MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
            M   G E D++TY TL++G C   +++   ++ +S+  RGI  N  +Y  ++  + K ++
Sbjct: 1216 MRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQK 1275

Query: 399  LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            ++E      EMR  G  P    YN +I   C+ G ++ A  ++ EM+         ++ V
Sbjct: 1276 IDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCV 1335

Query: 459  MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
            ++ G    G L EA + F+ +  +     P       LL+ + RA K+E A   +  I  
Sbjct: 1336 LLDGLCKNGHLEEAMDLFQSI--KKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK 1393

Query: 519  KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
             G E +  A+ I I+ L + G + EA      M +   +P   TF  +++ L K      
Sbjct: 1394 NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHE 1453

Query: 579  AAEITEKVR 587
            A ++ E++R
Sbjct: 1454 AIQLLEEMR 1462



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 207/430 (48%), Gaps = 7/430 (1%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
             Y  LI  L K RK G    L E+M+      + T  + +++       M  +A+++  E
Sbjct: 1053 TYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFT--YGMIIDALCKDGMTTEALDMFSE 1110

Query: 200  MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
            M   G  PD  V+  L+D LC+   +KEA + F EM  R     +  + SL++G  + G 
Sbjct: 1111 MIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGL 1170

Query: 259  LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              E  + L  M D GF PD   +  L+ G  + GK+ +A ++L+ MR KG +P+  +Y  
Sbjct: 1171 WKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNT 1230

Query: 319  LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
            L+  LC + ++E+A + F  +   G + +V +Y  LI+G+CK +KID  +   + M  +G
Sbjct: 1231 LMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKG 1290

Query: 379  ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            + P+ +TY  ++ A  +   +    +L  EM+  G    +S Y V++   CK G L+EA+
Sbjct: 1291 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAM 1350

Query: 439  NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +++  ++     P  + F +++ G    G L EA + F E+   GL   P       L+N
Sbjct: 1351 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGL--EPDTIAYNILIN 1408

Query: 499  SLL-RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L  +    E  K +W  +  KGC  +   + + I +L     + EA     +M + +  
Sbjct: 1409 GLCNKGMLSEAVKLLWQ-MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFS 1467

Query: 558  PQPDTFAKLM 567
            P     + L+
Sbjct: 1468 PDEAVTSMLL 1477



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
             +  LI  L K  K G    ++E MR +  +P ++T   +  LM        ++ A ++ 
Sbjct: 1192 TFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILT---YNTLMNGLCLVGQLEDATKLF 1248

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            + +   G + + F +  L++  CK+  + EA + F+EMR +  KPS   + +L+   C+ 
Sbjct: 1249 ESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQS 1308

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            G++  A+ + V+M+  G    +  Y  LL G  + G + +A +L + +++    PN   +
Sbjct: 1309 GRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVF 1368

Query: 317  TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            ++L+  +CR  K+EEA + F E+ ++G E D + Y  LI+G C    +    ++L  M +
Sbjct: 1369 SILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE 1428

Query: 377  RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +G LP+ +T+  I+    K+ E+ E ++L+ EMR     PD +  ++++ LA
Sbjct: 1429 KGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLA 1480



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 199/461 (43%), Gaps = 46/461 (9%)

Query: 139  DVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEV 196
            D +  L+ S++K+  +  V+ +  ++     +P L T     IL+    S R V     V
Sbjct: 947  DTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLN---ILIHCCCSLRAVGCGFGV 1003

Query: 197  LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
                 K G EPD      L+  +   + + +A +LFDEM ++      + +  L+ G CK
Sbjct: 1004 FGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCK 1063

Query: 256  EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
              K   A  +  +MK    + D+  Y  ++    + G  T+A ++  EM   G  P+   
Sbjct: 1064 ARKTGLAIKLHEKMK-GNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVV 1122

Query: 316  YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
            Y+ L+  LCR  +++EA   F EME  G  ADV TY +LI G  ++         L+ M+
Sbjct: 1123 YSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMV 1182

Query: 376  QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             RG  P+  T+  ++    K+ ++ E  +++  MR  G  PD+  YN ++   C +G+L+
Sbjct: 1183 DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLE 1242

Query: 436  EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLK 494
            +A  +                                   F+ +  RG+ L+   Y  L 
Sbjct: 1243 DATKL-----------------------------------FESLADRGIKLNVFSYNIL- 1266

Query: 495  ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
              +N   + QK++ A   +  +  KG + +   +   I +L  +G V+ A    ++M   
Sbjct: 1267 --INGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC 1324

Query: 555  DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
                +  T+  L+ GL K  + + A ++ + ++K   +  I
Sbjct: 1325 GQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI 1365



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 154/346 (44%), Gaps = 4/346 (1%)

Query: 225  VKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
            + +A KLFD  +     P    F  LL    K G       +  ++ D G +PD+   N 
Sbjct: 927  LNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNI 986

Query: 284  LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
            L+     +  +   F +     ++G +P+A + T L++ +     + +A + F EM + G
Sbjct: 987  LIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKG 1046

Query: 344  CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
               D  TY  LI+G CK+RK     ++ + M +     +  TY  I+ A  K     E +
Sbjct: 1047 LLGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEAL 1105

Query: 404  ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            ++  EM   G +PDV  Y+ ++   C+ G LKEA+  + EME   +S    ++  ++HG 
Sbjct: 1106 DMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 1165

Query: 464  LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
               G   E   +   MV RG   +P   T   L++ L +  KV  A+ +   +  KG E 
Sbjct: 1166 SRAGLWKEVTWFLNLMVDRGF--SPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEP 1223

Query: 524  NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            ++  +   ++ L   G +++A      + D  +     ++  L+ G
Sbjct: 1224 DILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILING 1269



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 131/320 (40%), Gaps = 38/320 (11%)

Query: 276  PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
            P    +N+LL+  A++G  +  F + +++   G  P+  +  +LI   C +  +      
Sbjct: 944  PCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGV 1003

Query: 336  FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
            F    + G E D VT TTL+ G      I    ++ D M ++G+L +  TY  ++    K
Sbjct: 1004 FGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCK 1063

Query: 396  KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              +    ++L  +M K  C  DV  Y ++I   CK G   EA+++++EM  A + P    
Sbjct: 1064 ARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVV 1122

Query: 456  FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
            +  ++ G    G L EA E+FKEM GR                                 
Sbjct: 1123 YSSLMDGLCRFGRLKEALEFFKEMEGR--------------------------------- 1149

Query: 516  IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
                G   +VY +   IH L   G  KE   +   M+D    P   TF  L+ GL K   
Sbjct: 1150 ----GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 1205

Query: 576  RQIAAEITEKVRKMAAERQI 595
               A +I E +R    E  I
Sbjct: 1206 VGEAQQILELMRHKGKEPDI 1225



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 9/235 (3%)

Query: 340  ERSGCEADVVTYTTLISGFCKSR--KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
            E+ G +A +  +   +   C+    K++   ++ D  +    +P   T+ H++ +  K  
Sbjct: 901  EKIGTKASLSPFERYVRDQCRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLG 960

Query: 398  ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
                   +  ++  +G  PD+   N++I   C L  +     V+         P   +  
Sbjct: 961  YYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVT 1020

Query: 458  VMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +V G   +  + +A + F EM  +GLL  A  YG    L+N L +A+K  +A  +   +
Sbjct: 1021 TLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGI---LINGLCKARKTGLAIKLHEKM 1077

Query: 517  VTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              KG C+ +V+ + + I +L  +G   EA     +M+ A ++P    ++ LM GL
Sbjct: 1078 --KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL 1130


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 202/427 (47%), Gaps = 24/427 (5%)

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           E R+E P L+T  V   L+  F S   V KA E+L  MP   C PDE  +  +LD LCK 
Sbjct: 205 ENRRE-PCLVTLNV---LLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKA 260

Query: 223 SSVKEAAKLFDEMRE--------RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
             V+EA +LF + RE           PSLR +  ++ G C+  ++ EA  +  +M +   
Sbjct: 261 GRVEEAVRLFGD-RELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNV 319

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD   Y  L+ G A+ GK+ DA  L +++   G  P+  +YT LI  LC     ++A  
Sbjct: 320 SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 379

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F +M R GC    VTY  +I   CK   ++   +++  MI+ G +P+ +TY  +M    
Sbjct: 380 LFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLC 439

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVV---------IRLACKLGELKEAVNVWNEME 445
           K   +EE + L  EM ++GC P+  ++N +         I  AC+ G+L EA  +   M 
Sbjct: 440 KSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMT 499

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
                P   ++  ++ G      + +A    ++MV R     P   T   L++ L +A +
Sbjct: 500 DDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ--CKPTVVTQNTLIHGLCKAGR 557

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++ A++V   +V+ G   +V  +   +H     G  + A     DM+   + P   T+  
Sbjct: 558 IKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTA 617

Query: 566 LMRGLKK 572
           L+ GL K
Sbjct: 618 LVSGLCK 624



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 228/490 (46%), Gaps = 61/490 (12%)

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLIT 173
           DA NL ++  + +   P+ V     Y +LI  L     F     L  +M +    P  +T
Sbjct: 341 DARNL-FQKLLHSGVTPSTV----AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVT 395

Query: 174 TEVFVILMRRFASAR--MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
             V +      AS +  M+++A +++ +M + G  PD   +  ++D LCK+S V+EA  L
Sbjct: 396 YNVMID-----ASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLL 450

Query: 232 FDEM-RERFKPSLRHFTSLLYGWCKE---------GKLVEAKYVLVQMKDAGFEPDIVVY 281
           F+EM R    P+ R   +++ G C++         GKL EA  +L +M D G  PD+V Y
Sbjct: 451 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTY 510

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           + L+SG   + ++ DA  LL++M ++ C P   +   LI  LC+  +++EA      M  
Sbjct: 511 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 570

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SG   DVVTY TL+ G C++ + +R  E+L  M+ RG+ PN +TY  ++    K   L E
Sbjct: 571 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 630

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              +  +M+  GC P++  Y  +I   C  G++   + ++ EM  A +SP  D  V    
Sbjct: 631 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISP--DHVV---- 684

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA-LLNSLLRAQKVEMAKDVWSCIVTKG 520
                                       YGTL A L  S   A+ +E+ ++    + ++ 
Sbjct: 685 ----------------------------YGTLAAELCKSGRSARALEILREGRESLRSEA 716

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
               VY +   +  L   G ++ A  +  DM+    +P P+  A L+ GL K      A 
Sbjct: 717 WGDEVYRFA--VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEAR 774

Query: 581 EITEKVRKMA 590
            + E++  +A
Sbjct: 775 AVLEEIMDLA 784



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 196/409 (47%), Gaps = 12/409 (2%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           + +A+++ ++M +    PD + +G L+D L K   + +A  LF ++      PS   +TS
Sbjct: 304 IDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTS 363

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++G C      +A+ +   M   G  P  V YN ++    + G + +A +L+K+M   G
Sbjct: 364 LIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDG 423

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC- 367
             P+  +Y  ++  LC+  ++EEA   F EMER GC  +  ++ T+I G C+  KID+  
Sbjct: 424 HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQAC 483

Query: 368 --------YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
                   + +L  M   G +P+ +TY  ++        +++   L+ +M K  C P V 
Sbjct: 484 QRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 543

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             N +I   CK G +KEA  V + M ++  SP   ++  +VHG    G    A E   +M
Sbjct: 544 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 603

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V RGL  AP   T  AL++ L +A ++  A  V++ + + GC  N++ +T  I    S G
Sbjct: 604 VARGL--APNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 661

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            V        +M+ A + P    +  L   L K      A EI  + R+
Sbjct: 662 QVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE 710



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 199/430 (46%), Gaps = 23/430 (5%)

Query: 152 RKFGAV--WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
           R F AV  ++LMEE     P +    V +  + +      VKK ++V   M   GC PD 
Sbjct: 25  RTFEAVKIFSLMEECHSPYPDVYN--VLIDSLSKRQETEAVKKMVQV---MVDRGCFPDS 79

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL-YGWCKEGKLVEAKYVLVQ 268
           F F  +L  LCK   + EA  + DEMR R  P     +S L +  C  G +  A  +L  
Sbjct: 80  FTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEI 139

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M  A    +   YN ++    +  ++ DA EL + M  K     A S   ++  L    +
Sbjct: 140 MPVA----NSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGR 195

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           ++EA + + E  R  C   +VT   L+ GFC   ++D+  E+L +M      P++++Y  
Sbjct: 196 IDEALQVYRENRREPC---LVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCT 252

Query: 389 IMLAHEKKEELEECVELMGE------MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           ++    K   +EE V L G+             P +  YN+VI   C+   + EAV ++ 
Sbjct: 253 VLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFE 312

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           +M   ++SP + S+ +++ G    G L +A   F++++  G+   P      +L++ L  
Sbjct: 313 KMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGV--TPSTVAYTSLIHGLCM 370

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           A   + A+++++ +  +GC  +   + + I +    G ++EAC     M++   +P   T
Sbjct: 371 ANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVT 430

Query: 563 FAKLMRGLKK 572
           +  +M GL K
Sbjct: 431 YNTVMDGLCK 440


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 230/471 (48%), Gaps = 22/471 (4%)

Query: 79  RILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSY 138
           R+L+  H+R           G  L  G    V+N   D G++    ++     P++    
Sbjct: 178 RVLEDLHAR-----------GCALDVGNCNLVLNAICDQGSVDKALHLL-RDLPSFGCEP 225

Query: 139 DV--YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           DV  Y A++K L   +++G V  LMEEM R   P  I T  F  L+       + ++  E
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVT--FNTLISYLCRNGLFERVHE 283

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
           VL +M ++GC PD  ++  ++D +CK   +K A ++ + M     KP++  + +LL G C
Sbjct: 284 VLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLC 343

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              +  E + +L +M D     D V +N L+  + Q G +    ELL++M   GC P+  
Sbjct: 344 SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVI 403

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT +I   C+   ++EA      M   GC+ + ++YT ++ G C + +     +++  M
Sbjct: 404 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 463

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           IQ+G   N +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G+ 
Sbjct: 464 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 523

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTL 493
            EA+ + N M    +SP T  +  +      +G + +  + F  +    + S A  Y   
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLY--- 580

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            A+++SL +  + E A +  + +V+ GC  N   +TI I  L S G VKEA
Sbjct: 581 NAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEA 631



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 3/394 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++R   +   +  A+ VLDEMP+ GC P   ++  +L+A C+    + A ++ +++  R 
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
               + +   +L   C +G + +A ++L  +   G EPD+V YN +L G     +     
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL++EM R  C PN  ++  LI  LCR    E  +    +M   GC  D+  Y T+I G 
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   +   +EIL+ M   G+ PN + Y  ++      E  EE  EL+ EM    C  D 
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +N+++   C+ G +   + +  +M      P   ++  +++GF  +G + EA    K 
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M   G    P   +   +L  L  A++   A+D+ S ++ +GC LN   +   I+ L   
Sbjct: 428 MTACG--CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKK 485

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G V++A      M+     P   +++ ++ GL K
Sbjct: 486 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 154/316 (48%), Gaps = 8/316 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  L+K L    ++     L+ EM  K+ P  +    F IL+  F    +
Sbjct: 329 KPNVV----CYNTLLKGLCSAERWEETEELLAEMFDKDCP--LDDVTFNILVDFFCQNGL 382

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V + IE+L++M  +GC PD   +  +++  CK   + EA  L   M     KP+   +T 
Sbjct: 383 VDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 442

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +L G C   + V+A+ ++ QM   G   + + +N L++   + G +  A ELLK+M   G
Sbjct: 443 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 502

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  SY+ +I  L +  K +EA      M   G   + + Y+++ S   +  +I++  
Sbjct: 503 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 562

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ D++    I  + + Y  ++ +  K+ E E  +E +  M   GCVP+ S Y ++IR  
Sbjct: 563 QMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 622

Query: 429 CKLGELKEAVNVWNEM 444
              G +KEA  +  E+
Sbjct: 623 ASEGFVKEAQEMLTEL 638



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 170/390 (43%), Gaps = 9/390 (2%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++   C+   ++ A +L   +     P+   +  ++   C  G++ +A  VL +M  
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  P   +Y+ +L    + G    A  +L+++  +GC  +  +  +++ A+C    +++
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDK 210

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A     ++   GCE DVV+Y  ++ G C +++     E+++ M++    PN +T+  ++ 
Sbjct: 211 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLIS 270

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              +    E   E++ +M + GC PD+  Y  +I   CK G LK A  + N M +  L P
Sbjct: 271 YLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKP 330

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAK 510
               +  ++ G        E  E   EM  +     P    T   L++   +   V+   
Sbjct: 331 NVVCYNTLLKGLCSAERWEETEELLAEMFDK---DCPLDDVTFNILVDFFCQNGLVDRVI 387

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++   ++  GC  +V  +T  I+     G + EA      M      P   ++  +++GL
Sbjct: 388 ELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447

Query: 571 KKLYNRQIAAE--ITEKVRKMAAERQITFK 598
                R + AE  +++ +++      ITF 
Sbjct: 448 CS-AERWVDAEDLMSQMIQQGCPLNPITFN 476


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 201/408 (49%), Gaps = 7/408 (1%)

Query: 165 RKEKPQLITTEVFVI-LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           R   P +IT    +  L + F     V +A   L +M   G EPD F +  ++D  CK  
Sbjct: 279 RGLTPDVITYNTLICGLCKNFK----VVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLG 334

Query: 224 SVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            ++ A ++  D   + F P    + SL+ G C++G +  A  V  +  + G +P++V+ N
Sbjct: 335 MMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCN 394

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+ G +Q G +  A +L+ EM   GC P+  +Y ++I  LC++  + +A+   ++    
Sbjct: 395 TLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAK 454

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   DV T+ TLI G+CK  K+D   EI+D M   G+ P+ +TY  I+    K  + E+ 
Sbjct: 455 GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDV 514

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           +     M + GCVP++  YN++    CK  +++EA+N+  EM+   L+P   +F  ++ G
Sbjct: 515 MGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKG 574

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F   G L  A + FK  V      +    T   ++N+      + MA+ +++ +   G  
Sbjct: 575 FCDNGDLDGAYQLFKR-VDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFS 633

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            + Y + + I      G++    S+ L  ++  ++P   TF +++  L
Sbjct: 634 PDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCL 681



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 208/458 (45%), Gaps = 4/458 (0%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K+  + H+   Y+ +I+ L    +F A+  ++ E R      +   V++  MR +     
Sbjct: 32  KEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGAMRNYGRKGK 91

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +++A++V + M  + CEP    +  +++ L +     +A K++  MR++   P +  FT 
Sbjct: 92  IQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTI 151

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            +  +C+  +   A+ +L  M   G E   V Y  ++ G+ +     +A EL +EM   G
Sbjct: 152 RMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLG 211

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  ++  LI  LCR   ++E+ R   ++ + G   ++ T    I GFC+   ++   
Sbjct: 212 ICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAI 271

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +LD  + RG+ P+ +TY  ++    K  ++ E    + +M   G  PD   YN +I   
Sbjct: 272 RLLDG-VGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGY 330

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CKLG ++ A  +  +       P   ++  +++G    G +  A   F E + +GL   P
Sbjct: 331 CKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGL--KP 388

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                  L+  L +   +  A  + + +   GC  +++ + + I+ L   G V +A +  
Sbjct: 389 NLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLV 448

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +D +    +P   TF  L+ G  K      A EI +++
Sbjct: 449 IDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRM 486



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 2/255 (0%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           K  L     F  L+  +     +  AIE++D M  +G  PD   +  +L+ LCK    ++
Sbjct: 454 KGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYED 513

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
               F  M E+   P++  +  L   +CK  K+ EA  ++ +M++ G  PD+V +  L+ 
Sbjct: 514 VMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMK 573

Query: 287 GYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           G+   G +  A++L K +  +        +Y ++I A      M  A + F +M  +G  
Sbjct: 574 GFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFS 633

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            D  TY  +I GFCK+  I+  Y  L   I++G++P+  T+  ++     K  + E V +
Sbjct: 634 PDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGI 693

Query: 406 MGEMRKIGCVPDVSN 420
           +  M   G VP+V N
Sbjct: 694 IHLMVHKGIVPEVVN 708


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 201/401 (50%), Gaps = 6/401 (1%)

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            LIT  V +  + +F     ++KA E+L  M   GC+P+   F  L++  C+  ++  A 
Sbjct: 278 NLITYNVLIHGLCKFGK---MEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRAL 334

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +L DEM +R   PS   + +++ G C    L  A  +L +M  +G +P++VVY+ L+ GY
Sbjct: 335 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGY 394

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
           A  G++ +A  LL  M   G  P+   Y  +I  L +  KMEEA+   +E++  G + D 
Sbjct: 395 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 454

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           VT+   I G+ K+ K+    +  D M+  G++PN   Y  ++  H K   L E + +   
Sbjct: 455 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRH 514

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           +  +G +PDV   +  I    K G ++EA+ V++E++   L P   ++  ++ GF  QG 
Sbjct: 515 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 574

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           + +A E   EM  +G+  AP      AL++ L ++  ++ A+ ++  +  KG E +   +
Sbjct: 575 VEKAFELHDEMCLKGI--APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTY 632

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  I     + +V EA S   +M    V P    +  L+ G
Sbjct: 633 STMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 673



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 243/495 (49%), Gaps = 14/495 (2%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           N V S   Y A+I  L   +       L+E+M     KP ++   V+  L+  +AS   +
Sbjct: 344 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV---VYSTLIMGYASEGRI 400

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++A  +LD M   G  PD F +  ++  L K   ++EA+    E++ R  KP    F + 
Sbjct: 401 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 460

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+ K GK+ EA     +M D G  P+  +Y  L++G+ + G + +A  + + +   G 
Sbjct: 461 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 520

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  + +  I  L +  +++EA + F E++  G   DV TY++LISGFCK  ++++ +E
Sbjct: 521 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 580

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M  +GI PN   Y  ++    K  +++   +L   M + G  PD   Y+ +I   C
Sbjct: 581 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 640

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K   + EA ++++EM +  + P +  +  +VHG   +G + +A   F+EM+ +G  +   
Sbjct: 641 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS 700

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
           + T   L++   ++ K++ A  ++  ++ K    +   +T  I      G ++EA     
Sbjct: 701 FNT---LIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 757

Query: 550 DMMDADVMPQPDTFAKLMRGLKKL-YNRQIAAEITEKVRKMAAERQITFKM--YKRRGER 606
           +M + +++    T+  LM G  KL  + ++ A   + V K     ++T+ +  Y    E 
Sbjct: 758 EMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 817

Query: 607 DLKE--KAKKQVDGR 619
           +L E  K + +V G+
Sbjct: 818 NLVEAFKLRDEVVGK 832



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 222/508 (43%), Gaps = 40/508 (7%)

Query: 102 LRPGLTERVI--NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           L P +   V+  N+ GD   L   ++ W+  Q       D +  L   L     FG    
Sbjct: 67  LNPDVIRAVLHQNQVGDPKRL-LDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANG 125

Query: 160 LMEEMRK---EKPQLI-------------TTEVFVILMRRFASARMVKKAIEV------- 196
           ++ +M +       ++             +  VF IL+  +    M+ +A  V       
Sbjct: 126 VLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKND 185

Query: 197 -----------LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
                      L  M + G  P+ + +  +   LC+   + EA   F+EM++   KP   
Sbjct: 186 SILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYN 245

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
             ++L+ G+ +EG + E   +   M   G   +++ YN L+ G  + GKM  A E+LK M
Sbjct: 246 ACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM 305

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              GC PN+ ++ +LI+  CR   M  A     EME+       V+Y  +I+G C  + +
Sbjct: 306 ITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDL 365

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
               ++L+ M   G+ PN + Y  +++ +  +  +EE   L+  M   G  PD+  YN +
Sbjct: 366 SLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAI 425

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I    K G+++EA     E++   L P   +F   + G+   G + EA +YF EM+  GL
Sbjct: 426 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL 485

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           +  P       L+N   +A  +  A  ++  +   G   +V   + +IH L  NG V+EA
Sbjct: 486 M--PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEA 543

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                ++ +  ++P   T++ L+ G  K
Sbjct: 544 LKVFSELKEKGLVPDVFTYSSLISGFCK 571



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 192/407 (47%), Gaps = 3/407 (0%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           EK  +  T  + I+      A+ + +A    +EM K G +PD      L+D   +   + 
Sbjct: 202 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 261

Query: 227 EAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           E  ++ D M     P +L  +  L++G CK GK+ +A  +L  M   G +P+   +  L+
Sbjct: 262 EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 321

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            GY +   M  A ELL EM ++   P+A SY  +I  LC  + +  AN+   +M  SG +
Sbjct: 322 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 381

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            +VV Y+TLI G+    +I+    +LD M   G+ P+   Y  I+    K  ++EE    
Sbjct: 382 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 441

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + E++  G  PD   +   I    K G++ EA   ++EM    L P    + V+++G   
Sbjct: 442 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 501

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G L+EA   F+ +   G+L  P   T  A ++ LL+  +V+ A  V+S +  KG   +V
Sbjct: 502 AGNLMEALSIFRHLHALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 559

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + ++  I      G V++A     +M    + P    +  L+ GL K
Sbjct: 560 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 606



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 196/391 (50%), Gaps = 9/391 (2%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASA 187
           K+   V     Y +LI    K  +    + L +EM  +   P +    ++  L+     +
Sbjct: 551 KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF---IYNALVDGLCKS 607

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             +++A ++ D MP+ G EPD   +  ++D  CK+ +V EA  LF EM  +  +P    +
Sbjct: 608 GDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVY 667

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L++G CKEG + +A  +  +M   GF   +  +N L+ GY +  K+ +A +L +EM  
Sbjct: 668 NALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIA 726

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K   P+  +YT +I   C+  KMEEAN  F EM+      D VTYT+L+ G+ K  +   
Sbjct: 727 KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSE 786

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            + + + M+ +G+ P+++TY  ++ AH K++ L E  +L  E+   G +   + ++++I 
Sbjct: 787 VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLIT 846

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK  +L EA  + +EM    L P   +   +V  F   G + EA   F+ +   GL+ 
Sbjct: 847 ALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLV- 905

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            P   TL  L+N  L     E A+++   +V
Sbjct: 906 -PDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVW------------------NEMEAASLSPGTD 454
           G  P V  ++++I    ++G L EA NV+                    M    L P T 
Sbjct: 153 GSSPVV--FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTY 210

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++ ++  G      + EA   F+EM   GL   P Y    AL++  +R   ++    +  
Sbjct: 211 TYTIITAGLCRAKRMNEAKLTFEEMQKTGL--KPDYNACSALIDGFMREGDIDEVLRIKD 268

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            +V+ G  +N+  + + IH L   G +++A      M+     P   TF  L+ G  + +
Sbjct: 269 VMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREH 328

Query: 575 NRQIAAEITEKVRK 588
           N   A E+ +++ K
Sbjct: 329 NMGRALELLDEMEK 342


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 195/391 (49%), Gaps = 3/391 (0%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           +  A M+  A  V   MP  GC    F +  LL  L     V+EA  +F  MR +   P 
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPD 176

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + ++++G C+ G+  EA+ +L +    GFEP+IVVYN L+ GY   G+M  A ++ +
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M    C PN  +YT LI  LC+  K+E A   F  M  +G E +VVTYT LI G C   
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +   + +L  M   G++PN  T+  ++ A  K+E++EE    +G + K G   +   Y 
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I   CK G++  A  +  +M +    P   S+  ++ G   Q  L +A    ++M+ +
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+ ++P   T   +++ L+R    E  K ++  ++  G   ++  +T+++ S    G ++
Sbjct: 417 GIQASPV--TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +A S  + M+D  V P   T+  L+RG   L
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANL 505



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 193/412 (46%), Gaps = 50/412 (12%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G EP+  V+  L+D  C    ++ A K+F+ M   R  P++R +T L++G CK GK+  A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +  +M +AG EP++V Y  L+ G    G +  AF LL  M   G  PN  +++VLI A
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDA 326

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+ EK+EEA      + + G + + V YT+LI G CK+ KID   E++  MI  G +P+
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPD 386

Query: 383 QLTYLHIM--LAHEKKEE-----LEECVE----------------------------LMG 407
             +Y  ++  L  +KK       LE+ +E                            +  
Sbjct: 387 AHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFD 446

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M   G  PD+  Y V +R  C+ G +++A ++  +M    + P   ++  ++ G+   G
Sbjct: 447 KMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC------------ 515
            + +A   F+ MVG+G    P   +   LL  +++    + + D+W              
Sbjct: 507 LVSQAFSTFEVMVGKGW--KPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLED 564

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           I  +   L    ++ +I  L     ++EA  + + M +A++ P  D +  ++
Sbjct: 565 ITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSII 616



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 10/405 (2%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           LL AL ++    +   L   M  R   +LR +T+L+  +C  G +  AK  L  +  AG 
Sbjct: 47  LLMALARHRMFPDMESLASRMPAR---NLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGL 103

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD   Y + + GY + G +T A  +   M  +GC   A +YT L+  L     + EA  
Sbjct: 104 APDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMT 163

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            FV M    C  D   Y T++ G C++ + +    +L+  +  G  PN + Y  ++  + 
Sbjct: 164 VFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYC 223

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
              E+E  +++   M    C P+V  Y  +I   CK G+++ A+ +++ M  A L P   
Sbjct: 224 NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVV 283

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ G   +G L  A      M   GL+  P   T   L+++L + +KVE A+    
Sbjct: 284 TYTALIQGQCNEGHLQCAFRLLHLMETNGLV--PNDWTFSVLIDALCKREKVEEAQLFLG 341

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---K 571
            +V KG ++N   +T  I  L   G +  A      M+    +P   +++ L+ GL   K
Sbjct: 342 SLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401

Query: 572 KLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQV 616
           KL    +  E  + + K      +T+ +      R++  +  K++
Sbjct: 402 KLSQATLMLE--DMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 221/457 (48%), Gaps = 4/457 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI++  K+R   +   ++EEMR+    L     +  L+     A  +++A     EM
Sbjct: 246 YSTLIEAYCKVRDLESAKKVVEEMRETGCSL-NVVTYNTLIGGLCRAGAIEEAFGYKKEM 304

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKL 259
             YG  PD F +G +++ LCK     +A  L DEM      P++  +++L+ G+ ++G  
Sbjct: 305 EDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNA 364

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  ++ +M  AG +P+ + Y+NL+ G  ++G+M  A  +LK+M + G   +  +Y ++
Sbjct: 365 DEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLV 424

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+   R    EEA     EM + G   +V TY+ +I+G C+  + +R   +L+ MI  G+
Sbjct: 425 IEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGL 484

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN   Y  ++  + ++       E + +M +    PD+  YN +I     +G++ EA+ 
Sbjct: 485 KPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIE 544

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            ++EM      P   ++  ++HG+   G L +A +   +M+  GL   P       +L  
Sbjct: 545 YYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGL--NPNDFIYAQILEG 602

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             ++  +E        ++ KG   +   + I IH+L S+GH++ A S    +    ++P 
Sbjct: 603 YFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPD 662

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
              +  L+ G  K  + + A  + +++ K   E  I+
Sbjct: 663 SLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGIS 699



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 184/377 (48%), Gaps = 3/377 (0%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M   G  PD + +  L++A CK   ++ A K+ +EMRE     ++  + +L+ G C+ G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA     +M+D G  PD   Y  +++G  + G+   A  LL EM   G  PN   Y+ 
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI    R    +EA +   EM  +G + + +TY  LI G CK  ++ R   IL  M + G
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            + + +TY  ++  H ++   EE   L+ EMRK G  P+V  Y+++I   C++GE + A 
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERAS 473

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  +M A  L P    +  ++ G+  +G    ACE  K+M    L   P      +L+ 
Sbjct: 474 GLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENL--TPDLYCYNSLII 531

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L    K++ A + +  ++ KG + N + +   IH     G++++A      M+++ + P
Sbjct: 532 GLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNP 591

Query: 559 QPDTFAKLMRGLKKLYN 575
               +A+++ G  K  N
Sbjct: 592 NDFIYAQILEGYFKSDN 608



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 203/418 (48%), Gaps = 8/418 (1%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A  QPN +     Y  LI+ L K+ + G    ++++M K    +  T  + +++      
Sbjct: 377 AGVQPNKI----TYDNLIRGLCKLGRMGRASRILKQMTKIG-YMADTMTYNLVIEGHLRQ 431

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHF 246
              ++A  +L+EM K G  P+ + +  +++ LC+    + A+ L ++M  +  KP+   +
Sbjct: 432 HNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVY 491

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             L+ G+C+EG    A   L +M      PD+  YN+L+ G + +GKM +A E   EM  
Sbjct: 492 APLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLE 551

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG  PN  +Y  LI        +E+A +   +M  SG   +   Y  ++ G+ KS  +++
Sbjct: 552 KGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEK 611

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
               L SM+++G++P+   Y  ++        ++  V ++  + K G VPD   Y  +I 
Sbjct: 612 VSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLIS 671

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK  ++++AV + +EM    + PG   +  ++ GF     +  A   F  ++ +GL  
Sbjct: 672 GFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGL-- 729

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            P   T   L++   +A  +  A D+++ ++T+G   + + +++      ++G +++A
Sbjct: 730 PPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQA 787



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 187/397 (47%), Gaps = 16/397 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V++Y +   +I  L ++ +      L+E+M  +  KP      V+  L+  +    
Sbjct: 450 SPN-VYTYSI---IINGLCQIGESERASGLLEQMIADGLKPNAF---VYAPLISGYCREG 502

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
               A E L +M +    PD + +  L+  L     + EA + +DEM E+ F+P+   + 
Sbjct: 503 SFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYG 562

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L++G+   G L +A+ +L QM ++G  P+  +Y  +L GY +   +      LK M  K
Sbjct: 563 GLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEK 622

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+   Y ++I  L     M+ A      +E++G   D + Y +LISGFCK+  +++ 
Sbjct: 623 GLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKA 682

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +LD M ++GI P    Y  ++    K +++     +   +   G  P+   Y  +I  
Sbjct: 683 VGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDG 742

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G++++A++++NEM    ++P    + V+  G    G L +A    +EM+ RG    
Sbjct: 743 YCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAII 802

Query: 488 PQYGTL------KALLNSLLRAQKVEMAKDVWSCIVT 518
             + TL      +  L   ++   V M KD+   ++T
Sbjct: 803 SSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLT 839



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 164/342 (47%), Gaps = 7/342 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI  LS + K        +EM ++  +P   T   +  L+  ++ A  ++KA ++L 
Sbjct: 526 YNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFT---YGGLIHGYSMAGNLEKAEQLLH 582

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G  P++F++  +L+   K+ ++++ +     M E+   P  R +  +++     G
Sbjct: 583 QMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSG 642

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  VL  ++  G  PD ++Y +L+SG+ +   M  A  LL EM +KG +P  + Y 
Sbjct: 643 HMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYN 702

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+ + +  A   F  +   G   + VTYTTLI G+CK+  I    ++ + M+  
Sbjct: 703 ALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTE 762

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+   Y  +        +L++ + +  EM   G    +S++N ++   CK G+L+E 
Sbjct: 763 GVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARG-YAIISSFNTLVHGFCKRGKLQET 821

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
           V   + M    + P   +   +V G    G L EA   F E+
Sbjct: 822 VKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVEL 863



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 203/478 (42%), Gaps = 26/478 (5%)

Query: 102 LRPGLTERVINRCGDAGNLGYR----YYMWA-SKQPNYVHSYDVYRALIKSLSKMRKFGA 156
           L P     ++ RC  +  L  +    ++ W+ ++      + D +  L  SL     +  
Sbjct: 79  LSPAALSSLLRRCNSSPRLHPKLLLDFFYWSRTRLAPSAPAPDAFAHLAVSLCAAGLYPQ 138

Query: 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
              L+++M +  P    T   V+          V +A+   D+    G  P   V   L+
Sbjct: 139 ANGLLDQMIRAYP----TPPLVL--------SSVHRALSGSDQ----GRRP--VVLDVLV 180

Query: 217 DALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           D   K   V++ A++   M++    PSLR    LL    +   L     V   M+ AG  
Sbjct: 181 DTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGIS 240

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD+  Y+ L+  Y ++  +  A ++++EMR  GC  N  +Y  LI  LCR   +EEA   
Sbjct: 241 PDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGY 300

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             EME  G   D  TY  +I+G CK  + D+   +LD M   G++PN + Y  ++    +
Sbjct: 301 KKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMR 360

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           +   +E  +++ EM   G  P+   Y+ +IR  CKLG +  A  +  +M        T +
Sbjct: 361 QGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMT 420

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           + +++ G L Q    EA     EM   G+  +P   T   ++N L +  + E A  +   
Sbjct: 421 YNLVIEGHLRQHNKEEAFLLLNEMRKGGI--SPNVYTYSIIINGLCQIGESERASGLLEQ 478

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           ++  G + N + +   I      G    AC     M   ++ P    +  L+ GL  +
Sbjct: 479 MIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNV 536



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 138/273 (50%), Gaps = 3/273 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  +++   K      V + ++ M  EK  +    ++ I++   +S+  ++ A+ VL  
Sbjct: 595 IYAQILEGYFKSDNLEKVSSTLKSML-EKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSV 653

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           + K G  PD  ++G L+   CK + +++A  L DEM ++  +P +  + +L+ G+CK   
Sbjct: 654 IEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDD 713

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +  A+ +   +   G  P+ V Y  L+ GY + G + DA +L  EM  +G  P+A  Y+V
Sbjct: 714 ISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSV 773

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L         +++A     EM   G  A + ++ TL+ GFCK  K+    + L  M+ + 
Sbjct: 774 LAAGCSNSGDLQQALFITEEMIARG-YAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKD 832

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           I+P+ LT  +I++   +  +L E   +  E+++
Sbjct: 833 IVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQ 865



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 164/390 (42%), Gaps = 27/390 (6%)

Query: 222 NSSVKEAAKLFDEM----RERFKPSL---RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           NSS +   KL  +     R R  PS      F  L    C  G   +A  +L QM  A  
Sbjct: 92  NSSPRLHPKLLLDFFYWSRTRLAPSAPAPDAFAHLAVSLCAAGLYPQANGLLDQMIRAYP 151

Query: 275 EPDIV------------------VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            P +V                  V + L+  Y + G++ D  E++  M+  G  P+    
Sbjct: 152 TPPLVLSSVHRALSGSDQGRRPVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCC 211

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L++ L R + ++   +    ME +G   DV TY+TLI  +CK R ++   ++++ M +
Sbjct: 212 NGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRE 271

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G   N +TY  ++    +   +EE      EM   G VPD   Y  +I   CK G   +
Sbjct: 272 TGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQ 331

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  + +EM  A L P    +  ++ GF+ QG   EA +  KEM   G+   P   T   L
Sbjct: 332 AKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGV--QPNKITYDNL 389

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +  L +  ++  A  +   +   G   +   + + I       + +EA     +M    +
Sbjct: 390 IRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGI 449

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            P   T++ ++ GL ++   + A+ + E++
Sbjct: 450 SPNVYTYSIIINGLCQIGESERASGLLEQM 479



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 25/242 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K         +   +  +   P  +T   +  L+  +  A  ++ AI++ +
Sbjct: 701 YNALIDGFCKSDDISHARNIFNSIICKGLPPNCVT---YTTLIDGYCKAGDIRDAIDLYN 757

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSS-VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD FV+  +L A C NS  +++A  + +EM  R    +  F +L++G+CK G
Sbjct: 758 EMLTEGVAPDAFVYS-VLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRG 816

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL E    L  M D    P ++   N++ G  + GK+++A  +  E+++K    NA+   
Sbjct: 817 KLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQK----NASH-- 870

Query: 318 VLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
                       +  +  F +M   G    DV+    +I   CK   +D+   + D+++ 
Sbjct: 871 ---------RDTDHLSSLFTDMINQGLVPLDVI--HNMIQSHCKQGYLDKALMLHDALVA 919

Query: 377 RG 378
           +G
Sbjct: 920 KG 921



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 2/184 (1%)

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
           G M   G  PDV  Y+ +I   CK+ +L+ A  V  EM     S    ++  ++ G    
Sbjct: 232 GFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRA 291

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G + EA  Y KEM   GL+  P   T  A++N L +  + + AK +   +   G   NV 
Sbjct: 292 GAIEEAFGYKKEMEDYGLV--PDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVV 349

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            ++  I      G+  EA     +M  A V P   T+  L+RGL KL     A+ I +++
Sbjct: 350 VYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQM 409

Query: 587 RKMA 590
            K+ 
Sbjct: 410 TKIG 413


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 191/381 (50%), Gaps = 3/381 (0%)

Query: 190  VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            +K+A  +L  M   G  PD   +  +++  C+   + +  KL + M R+  KP+   + S
Sbjct: 705  IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 764

Query: 249  LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            ++   C+  KL EA+    +M   G  PD VVY  L+ G+ + G +  A +   EM  + 
Sbjct: 765  IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 824

Query: 309  CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
              P+  +YT +I   C++  M EA + F EM   G E D VT+T LI+G+CK+  +   +
Sbjct: 825  ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 884

Query: 369  EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
             + + MIQ G  PN +TY  ++    K+ +L+   EL+ EM KIG  P++  YN ++   
Sbjct: 885  RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 944

Query: 429  CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            CK G ++EAV +  E EAA L+  T ++  ++  +   G + +A E  KEM+G+GL   P
Sbjct: 945  CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL--QP 1002

Query: 489  QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
               T   L+N       +E  + + + ++ KG   N   +   +       ++K A +  
Sbjct: 1003 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 1062

Query: 549  LDMMDADVMPQPDTFAKLMRG 569
             DM    V P   T+  L++G
Sbjct: 1063 KDMCSRGVGPDGKTYENLVKG 1083



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 192/411 (46%), Gaps = 43/411 (10%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  ++    +  +   VW L+E M+++  KP        + L+ R      + +A E   
Sbjct: 727  YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK---LAEAEEAFS 783

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            EM + G  PD  V+  L+D  CK   ++ A+K F EM  R   P +  +T+++ G+C+ G
Sbjct: 784  EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 843

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             +VEA  +  +M   G EPD V +  L++GY + G M DAF +   M + GC PN  +YT
Sbjct: 844  DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 903

Query: 318  VLIQALCRMEKMEEANRAFVEM-----------------------------------ERS 342
             LI  LC+   ++ AN    EM                                   E +
Sbjct: 904  TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 963

Query: 343  GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            G  AD VTYTTL+  +CKS ++D+  EIL  M+ +G+ P  +T+  +M        LE+ 
Sbjct: 964  GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 1023

Query: 403  VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             +L+  M   G  P+ + +N +++  C    LK A  ++ +M +  + P   ++  +V G
Sbjct: 1024 EKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 1083

Query: 463  FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
                  + EA   F+EM G+G   +    T   L+   L+ +K   A++V+
Sbjct: 1084 HCKARNMKEAWFLFQEMKGKGF--SVSVSTYSVLIKGFLKRKKFLEAREVF 1132



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 158/317 (49%), Gaps = 2/317 (0%)

Query: 254  CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            C+ G++ EA ++L+ M+  G+ PD++ Y+ +++GY + G++   ++L++ M+RKG  PN+
Sbjct: 700  CQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 759

Query: 314  NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
              Y  +I  LCR+ K+ EA  AF EM R G   D V YTTLI GFCK   I    +    
Sbjct: 760  YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE 819

Query: 374  MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
            M  R I P+ LTY  I+    +  ++ E  +L  EM   G  PD   +  +I   CK G 
Sbjct: 820  MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGH 879

Query: 434  LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            +K+A  V N M  A  SP   ++  ++ G   +G L  A E   EM   GL   P   T 
Sbjct: 880  MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL--QPNIFTY 937

Query: 494  KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             +++N L ++  +E A  +       G   +   +T  + +   +G + +A     +M+ 
Sbjct: 938  NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 997

Query: 554  ADVMPQPDTFAKLMRGL 570
              + P   TF  LM G 
Sbjct: 998  KGLQPTIVTFNVLMNGF 1014



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 128  ASKQPNYVHSYDV------YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVI 179
            ASK    +HS D+      Y A+I    ++        L  EM  +  +P  +T   F  
Sbjct: 813  ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT---FTE 869

Query: 180  LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
            L+  +  A  +K A  V + M + GC P+   +  L+D LCK   +  A +L  EM +  
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 239  FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             +P++  + S++ G CK G + EA  ++ + + AG   D V Y  L+  Y + G+M  A 
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 299  ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            E+LKEM  KG  P   ++ VL+   C    +E+  +    M   G   +  T+ +L+  +
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 359  CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            C    +     I   M  RG+ P+  TY +++  H K   ++E   L  EM+  G    V
Sbjct: 1050 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 1109

Query: 419  SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            S Y+V+I+   K  +  EA  V+++M    L+   + F
Sbjct: 1110 STYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 1147



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 179/369 (48%), Gaps = 8/369 (2%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ-MGKMTDAFELLKEMRRKGCDPNANS 315
           G L EA+ V  +M + G    +   N  L+  ++   K   A  + +E    G   N  S
Sbjct: 632 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 691

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y ++I  +C++ +++EA+   + ME  G   DV++Y+T+++G+C+  ++D+ +++++ M 
Sbjct: 692 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 751

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           ++G+ PN   Y  I+    +  +L E  E   EM + G +PD   Y  +I   CK G+++
Sbjct: 752 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 811

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A   + EM +  ++P   ++  ++ GF   G ++EA + F EM  +GL   P   T   
Sbjct: 812 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL--EPDSVTFTE 869

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+N   +A  ++ A  V + ++  GC  NV  +T  I  L   G +  A     +M    
Sbjct: 870 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFKM----YKRRGERDLKE 610
           + P   T+  ++ GL K  N + A ++  +          +T+      Y + GE D  +
Sbjct: 930 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 611 KAKKQVDGR 619
           +  K++ G+
Sbjct: 990 EILKEMLGK 998



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 1/212 (0%)

Query: 174  TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
            T  +  LM  +  +  + KA E+L EM   G +P    F  L++  C +  +++  KL +
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1028

Query: 234  EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
             M  +   P+   F SL+  +C    L  A  +   M   G  PD   Y NL+ G+ +  
Sbjct: 1029 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 1088

Query: 293  KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
             M +A+ L +EM+ KG   + ++Y+VLI+   + +K  EA   F +M R G  AD   + 
Sbjct: 1089 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 1148

Query: 353  TLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
                   K ++ D   + +D +I+  ++  QL
Sbjct: 1149 FFSDTKYKGKRPDTIVDPIDEIIENYLVDEQL 1180


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 193/386 (50%), Gaps = 4/386 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  L K  +    + L E+M  +        V+  L+R F      +   ++  E+
Sbjct: 461 YCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKEL 519

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + GC+PD  +    +D + K   V++   +F+++R   F P +R ++ L++G  K G+ 
Sbjct: 520 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA 579

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            E   +   MK  GF  D   YN ++ G+ + GK+  A+E+L+EM+ K   P   +Y  +
Sbjct: 580 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI 639

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  L ++++++EA   F E +  G E +VV Y++LI GF K  +ID  Y IL+ M+++G+
Sbjct: 640 VDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 699

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  T+  ++ A  K EE+ E +     M+++ C P+   Y+++I   C++ +  +A  
Sbjct: 700 TPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV 759

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            W +M+   L P   ++  M+ G    G + +A   F+     G    P   +  AL+  
Sbjct: 760 FWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG--GIPDAASFNALIEG 817

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNV 525
           +  A +   A  V+     +GC +N+
Sbjct: 818 MSNANRAMEAYQVFEETRLRGCRINI 843



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 201/409 (49%), Gaps = 7/409 (1%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           ++  Y  LI +L++ R+      L+ +M +E    +   +F  L+R  A    V  A+ +
Sbjct: 178 AFSAYTVLIGALAEARRPERALELLRQM-QEVGYEVGVHLFTTLVRALAREGQVADALAL 236

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           +DE+     EPD  ++   +D   K  +V  A K F E++ +  KP    +TS+++  CK
Sbjct: 237 VDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCK 296

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G+L EA+ +  QM+     P    YN ++ GY   G+  DA++LL+ +R +GC P+  S
Sbjct: 297 AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS 356

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           +  ++  L +  K++EA   F E+ +   E +  TY  +I   C   +++  Y ILD M 
Sbjct: 357 FNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME 415

Query: 376 QRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              + PN LT ++IM+    K  +LEE  ++     + GC PD   Y  +I    K G++
Sbjct: 416 HASLFPNLLT-VNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 474

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  ++ +M  A  +     +  ++  F   G   +  + FKE++ RG    P    L 
Sbjct: 475 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG--CKPDLTLLN 532

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
             ++ + +A +VE  + ++  I + G   +V +++I IH L   G  +E
Sbjct: 533 TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARE 581



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 242/507 (47%), Gaps = 12/507 (2%)

Query: 72  HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRC----GDAGNLGYRYYMW 127
           H    + R L +       L L  +  G  L P +   + N C    G AGN+   +  +
Sbjct: 215 HLFTTLVRALAREGQVADALALVDEVKGSCLEPDIV--LYNVCIDCFGKAGNVDMAWKFF 272

Query: 128 ASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
              +   +   DV Y ++I  L K  + G    L  +M  E+  +     +  ++  + S
Sbjct: 273 HELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAER-SVPCAYAYNTMIMGYGS 331

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF 246
           A   + A ++L+ + + GC P    F  +L  L K   V EA  LF+ M++  +P+   +
Sbjct: 332 AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTY 391

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             ++   C  G++ EA  +L +M+ A   P+++  N ++    +  K+ +A+++ +   +
Sbjct: 392 NIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQ 451

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +GC+P+  +Y  LI  L +  +++EA R F +M  +G  A+ V YT+LI  F    + + 
Sbjct: 452 RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED 511

Query: 367 CYEILDSMIQRGILPNQLTYLHI-MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
            ++I   +I+RG  P+ LT L+  M    K  E+E+   +  ++R  G +PDV +Y+++I
Sbjct: 512 GHKIFKELIRRGCKPD-LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 570

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               K G+ +E  N+++ M+    +    ++  +V GF   G + +A E  +EM  + + 
Sbjct: 571 HGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV- 629

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  A+++ L +  +++ A  ++    +KG ELNV  ++  I      G + EA 
Sbjct: 630 -QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 688

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
               +MM   + P   T+  L+  L K
Sbjct: 689 LILEEMMKKGLTPNVYTWNSLLDALVK 715



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 212/448 (47%), Gaps = 5/448 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +++  L K RK     +L E M+K+      +  + I++        V++A  +LDEM
Sbjct: 357 FNSILTCLGKKRKVDEALSLFEVMKKDAEP--NSSTYNIIIDMLCLGGRVEEAYRILDEM 414

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKL 259
                 P+      ++D LCK   ++EA K+F+   +R   P    + SL+ G  K+G++
Sbjct: 415 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 474

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M DAG   + VVY +L+  +   G+  D  ++ KE+ R+GC P+       
Sbjct: 475 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTY 534

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  + +  ++E+    F ++   G   DV +Y+ LI G  K+ +      I  +M Q+G 
Sbjct: 535 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 594

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             +   Y  ++    K  ++ +  E++ EM++    P V+ Y  ++    K+  L EA  
Sbjct: 595 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 654

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ E ++  +      +  ++ GF   G + EA    +EM+ +GL   P   T  +LL++
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL--TPNVYTWNSLLDA 712

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L++A+++  A   +  +    C  N Y ++I I+ L       +A  +  DM    ++P 
Sbjct: 713 LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 772

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             T+  ++ GL K+ N   A  + E+ +
Sbjct: 773 VVTYTTMISGLAKVGNITDAYSLFERFK 800



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 199/405 (49%), Gaps = 13/405 (3%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMR---KEKPQLITTEVFVILMRRFASARMVKKAIE 195
           D Y A++  L       A+  ++EEM       P      +   L+R    AR +  A+ 
Sbjct: 112 DAYHAVLPFLH--HDLAALEKVLEEMAVLGYGLPNQACAHLAAALVR----ARRLDDAVL 165

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWC 254
            +  M +    P    +  L+ AL +    + A +L  +M+E  ++  +  FT+L+    
Sbjct: 166 AVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALA 225

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           +EG++ +A  ++ ++K +  EPDIV+YN  +  + + G +  A++   E++ +G  P+  
Sbjct: 226 REGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDV 285

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           SYT +I  LC+  ++ EA   F +ME          Y T+I G+  + + +  Y++L+ +
Sbjct: 286 SYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERL 345

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            +RG +P+ +++  I+    KK +++E + L   M+K    P+ S YN++I + C  G +
Sbjct: 346 RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRV 404

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           +EA  + +EME ASL P   +  +MV        L EA + F+    RG    P   T  
Sbjct: 405 EEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG--CNPDCVTYC 462

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           +L++ L +  +V+ A  ++  ++  G   N   +T  I + F +G
Sbjct: 463 SLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG 507



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 130/287 (45%), Gaps = 2/287 (0%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A KQ  +      Y A++    K  K    + ++EEM KEK    T   +  ++   A  
Sbjct: 588 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM-KEKCVQPTVATYGAIVDGLAKI 646

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             + +A  + +E    G E +  ++  L+D   K   + EA  + +EM ++   P++  +
Sbjct: 647 DRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 706

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            SLL    K  ++ EA      MK+    P+   Y+ L++G  ++ K   AF   ++M++
Sbjct: 707 NSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 766

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +G  PN  +YT +I  L ++  + +A   F   + +G   D  ++  LI G   + +   
Sbjct: 767 QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAME 826

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
            Y++ +    RG   N  + + ++ A  K E LE+   +   +R+I 
Sbjct: 827 AYQVFEETRLRGCRINIKSCISLLDALNKSECLEQAAIVGAVLREIA 873



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 3/277 (1%)

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L +   +  ++ DA   +  MRR    P  ++YTVLI AL    + E A     +M+  
Sbjct: 149 HLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEV 208

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G E  V  +TTL+    +  ++     ++D +    + P+ + Y   +    K   ++  
Sbjct: 209 GYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMA 268

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +   E++  G  PD  +Y  +I + CK G L EA  ++ +MEA    P   ++  M+ G
Sbjct: 269 WKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 328

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           +   G   +A +  + +  RG +  P   +  ++L  L + +KV+ A  ++  ++ K  E
Sbjct: 329 YGSAGRFEDAYKLLERLRERGCI--PSVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAE 385

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            N   + I I  L   G V+EA     +M  A + P 
Sbjct: 386 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 422


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 198/404 (49%), Gaps = 5/404 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P  IT   +  L+  F  AR  ++A  +LDEM K G  P   V+  ++  LC N  V  A
Sbjct: 31  PDSIT---YSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSA 87

Query: 229 AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
              + +M+    PS+  +T L+   CK  ++ +A  +L  M +AG  P++V YN L++G+
Sbjct: 88  LVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGF 147

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            ++G M +A  L  +M    C P+  +Y +LI   C+ E+ ++  +   EM + GCE + 
Sbjct: 148 CKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 207

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           +TY TL+    KS K    + +   M++R   P+  T+  ++    K  +L+   EL   
Sbjct: 208 ITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQL 267

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M   GC+PD+  YN++I  AC+   + +A  +   M  A   P   ++  +V G      
Sbjct: 268 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 327

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           + EA E ++ +   G        T   L++ L ++++++ A+ +   +   G   +V A+
Sbjct: 328 VDEAYEVYEVLRNGGYFL--DVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 385

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           TI IH       + ++ ++  +M+D   +P   T++ ++  L K
Sbjct: 386 TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCK 429



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 197/417 (47%), Gaps = 17/417 (4%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           + D ++ +R+L +   R           G+V    +   +I    D G +      +   
Sbjct: 46  ARDFQQAYRLLDEMEKR-----------GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM 94

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           Q +   S   Y  L+ +L K  +      ++E+M +    P ++T   +  L+  F    
Sbjct: 95  QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVT---YNTLINGFCKLG 151

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            + +A+ + ++M +  C PD F +  L+D  CK    ++ AKL  EM +   +P+   + 
Sbjct: 152 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYN 211

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+    K GK ++A  +   M     +P    +N ++  + ++G++  A+EL + M  +
Sbjct: 212 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 271

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC P+  +Y ++I   CR  ++++A +    M  +GC  DVVTY +++SG CK+ ++D  
Sbjct: 272 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 331

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           YE+ + +   G   + +T   ++    K   L++  +L+ EM + G  PDV  Y ++I  
Sbjct: 332 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 391

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            CK  +L +++  ++EM      P   ++ +++        + + C   K M+ RG+
Sbjct: 392 FCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 164/332 (49%), Gaps = 4/332 (1%)

Query: 214 CLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           CLL A  +    +EA  LF + +     P    +++L+ G+CK     +A  +L +M+  
Sbjct: 3   CLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKR 62

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  P   VYN ++ G    G++  A    ++M+R  C P+  +YT+L+ ALC+  ++ +A
Sbjct: 63  GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARISDA 121

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
           +    +M  +GC  +VVTY TLI+GFCK   +D    + + M++    P+  TY  ++  
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           + K+E  ++  +L+ EM K GC P+   YN ++    K G+  +A N+   M      P 
Sbjct: 182 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS 241

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             +F +M+  F   G L  A E F+ M  RG L  P   T   +++   RA +++ A+ +
Sbjct: 242 HFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCL--PDIYTYNIMISGACRANRIDDARQL 299

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              +   GC  +V  +   +  L     V EA
Sbjct: 300 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 331



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 160/341 (46%), Gaps = 5/341 (1%)

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           LL  + ++ K  EA Y L +    G   PD + Y+ L++G+ +      A+ LL EM ++
Sbjct: 4   LLSAFVRKKKAQEA-YDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKR 62

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+   Y  +I+ LC   +++ A   + +M+R  C   V+TYT L+   CKS +I   
Sbjct: 63  GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARISDA 121

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             IL+ MI+ G  PN +TY  ++    K   ++E V L  +M +  C PDV  YN++I  
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK    ++   +  EM      P   ++  ++   +  G  I+A    + M+ R     
Sbjct: 182 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD--CK 239

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P + T   +++   +  ++++A +++  +  +GC  ++Y + I I        + +A   
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 299

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              M +A   P   T+  ++ GL K      A E+ E +R 
Sbjct: 300 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRN 340



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 3/204 (1%)

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++ A  +K++ +E  +L        C PD   Y+ +I   CK  + ++A  + +EME   
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P    +  ++ G    G +  A  ++++M       AP   T   L+++L ++ ++  
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH---CAPSVITYTILVDALCKSARISD 120

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  +   ++  GC  NV  +   I+     G++ EA      M++    P   T+  L+ 
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 569 GLKKLYNRQIAAEITEKVRKMAAE 592
           G  K    Q  A++ +++ K   E
Sbjct: 181 GYCKQERPQDGAKLLQEMVKYGCE 204


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 232/474 (48%), Gaps = 15/474 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           +PN +     +  LI       +     AL++ M   K +P ++T      L+       
Sbjct: 136 EPNTI----TFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNT---LINGLCLKG 188

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V +A+ ++D M KYGCE +E  +G +L+ +CK+ +   A  LF +M ER  K S+  ++
Sbjct: 189 RVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYS 248

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            ++   CK+G L +A  +  +M+  G + D+V Y++++ G    G+  D  ++L+EM  +
Sbjct: 249 IVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGR 308

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  +++ LI    +  K+ EA   + EM   G   D +TY++LI GFCK  ++   
Sbjct: 309 NIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEA 368

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++LD M+ +G  PN +TY  ++ ++ K + ++  + L  E+   G V D   YN +++ 
Sbjct: 369 NQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQG 428

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G+L  A  ++ EM +  + P   ++ +++ G    G L +A E F++M    ++  
Sbjct: 429 FCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILG 488

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
              G    +++ +  A KV+ A  ++  +  KG + +V  + + I  L   G + EA   
Sbjct: 489 --IGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADML 546

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE--KVRKMAAERQITFKM 599
              M +    P   T+  L+R          + E+ E  K+R  AA+   T KM
Sbjct: 547 FRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADAS-TIKM 599



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 191/388 (49%), Gaps = 40/388 (10%)

Query: 148 LSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMPKYGC 205
           L++M K G     ++  RK + + I   V  + I++        +  A+ + +EM   G 
Sbjct: 216 LNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGI 275

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
           + D   +  ++  LC +    + AK+  EM  R   P++  F++L+  + KEGKL+EAK 
Sbjct: 276 KADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKE 335

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +  +M   G  PD + Y++L+ G+ +  ++ +A ++L  M  KGC+PN  +Y++LI + C
Sbjct: 336 LYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYC 395

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           + ++++   R F E+   G  AD VTY TL+ GFC+S K++   E+   M+ RG+ P+ +
Sbjct: 396 KAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVV 455

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKI-------------------------------- 412
           TY  ++       EL++ +E+  +M+K                                 
Sbjct: 456 TYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSL 515

Query: 413 ---GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  PDV  YNV+I   CK G L EA  ++ +M+    +P   ++ +++   LG   +
Sbjct: 516 SVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGV 575

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALL 497
           I + E  +EM  RG   A    T+K ++
Sbjct: 576 ISSVELIEEMKMRGF--AADASTIKMVV 601



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 191/411 (46%), Gaps = 38/411 (9%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
           I++  F   R +  A  V+    K+G EP+   F  L++  C    V EA  L D M E 
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           +++P++    +L+ G C +G++ EA  ++ +M   G E + + Y  +L+   + G    A
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +L ++M  +    +   Y+++I +LC+   +++A   F EME  G +ADVV Y+++I G
Sbjct: 229 LDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGG 288

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C   + D   ++L  MI R I+PN +T                                
Sbjct: 289 LCNDGRWDDGAKMLREMIGRNIIPNVVT-------------------------------- 316

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              ++ +I +  K G+L EA  ++NEM A  ++P T ++  ++ GF  +  L EA +   
Sbjct: 317 ---FSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLD 373

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            MV +G    P   T   L+NS  +A++V+    ++  I +KG   +   +   +     
Sbjct: 374 LMVSKG--CEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQ 431

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           +G +  A     +M+   V P   T+  L+ GL      Q A EI EK++K
Sbjct: 432 SGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQK 482



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 139/301 (46%), Gaps = 13/301 (4%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K+ +A +L + M +    P+   ++ L  A+ R ++ +       EM+ +G E ++ T  
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +I+ FC+ RK+   + ++   ++ G  PN +T+  ++     +  + E V L+  M ++
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
              P+V   N +I   C  G + EA+ + + M          ++  +++     G    A
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 473 CEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
            + F++M  R +  S  QY     +++SL +   ++ A  +++ +  KG + +V A++  
Sbjct: 229 LDLFRKMEERSIKASVVQYSI---VIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSI 285

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIAAEI 582
           I  L ++G   +      +M+  +++P   TF+ L+            K+LYN  +A  I
Sbjct: 286 IGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGI 345

Query: 583 T 583
            
Sbjct: 346 A 346



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 46/250 (18%)

Query: 112 NRCGDAGNLGYRYYMWASK--QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169
           NR G+A  +     +  SK  +PN V     Y  LI S  K ++      L  E+   K 
Sbjct: 363 NRLGEANQM---LDLMVSKGCEPNIV----TYSILINSYCKAKRVDNGMRLFCEI-SSKG 414

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            +  T  +  L++ F  +  +  A E+  EM   G  P    +G LLD LC N  +++A 
Sbjct: 415 LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKAL 474

Query: 230 KLFDEMRER------------------------------------FKPSLRHFTSLLYGW 253
           ++F++M++                                      KP +  +  ++ G 
Sbjct: 475 EIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGL 534

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+G L EA  +  +MK+ G  P    YN L+  +     +  + EL++EM+ +G   +A
Sbjct: 535 CKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADA 594

Query: 314 NSYTVLIQAL 323
           ++  +++  L
Sbjct: 595 STIKMVVVML 604


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 198/438 (45%), Gaps = 8/438 (1%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKA 193
           H+   Y  LI    +  +     A++ +M K   +P ++T      L+  F     +  A
Sbjct: 114 HNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNS---LLNGFCHGNRISDA 170

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           + ++ +M + G +PD F F  L+  L +++   EA  L D M  +  +P L  +  ++ G
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNG 230

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CK G +  A  +L +M+    EP +V+YN ++        + DA  L  EM  KG  PN
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y  LI+ LC   +  +A+R   +M       +VVT++ LI  F K  K+    ++ D
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI+R I P+  TY  ++      + L+E   +   M    C P+V  YN +I+  CK  
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + E + ++ EM    L   T ++  ++HGF        A   FK+MV  G+L  P   T
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL--PDIMT 468

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              LL+ L    KVE A  V+  +     E ++Y + I I  +   G V++       + 
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528

Query: 553 DADVMPQPDTFAKLMRGL 570
              V P   T+  +M G 
Sbjct: 529 LKGVKPNVVTYTTMMSGF 546



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 199/392 (50%), Gaps = 16/392 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     Y  ++  L K        +L+++M + K  P ++   ++  ++    + +
Sbjct: 218 QPDLV----TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV---IYNTIIDALCNYK 270

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V  A+ +  EM   G  P+   +  L+  LC      +A++L  +M ER   P++  F+
Sbjct: 271 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 330

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+  + KEGKLVEA+ +  +M     +PDI  Y++L++G+    ++ +A  + + M  K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 390

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            C PN  +Y  LI+  C+ ++++E    F EM + G   + VTYTTLI GF ++R+ D  
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNA 450

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+  G+LP+ +TY  ++       ++E  + +   +++    PD+  YN++I  
Sbjct: 451 QIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEG 510

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G++++  +++  +    + P   ++  M+ GF  +G   EA   F+EM   G L  
Sbjct: 511 MCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPL-- 568

Query: 488 PQYGTLKALLNSLLR----AQKVEMAKDVWSC 515
           P  GT   L+ + LR    A   E+ +++ SC
Sbjct: 569 PDSGTYNTLIRAHLRDGDKAASAELIREMRSC 600



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 179/382 (46%), Gaps = 3/382 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           +  A+ +  +M K    P    F  LL A+ K +       L ++M+      +L  ++ 
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  +C+  +L  A  VL +M   G+EPDIV  N+LL+G+    +++DA  L+ +M   G
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P++ ++  LI  L R  +  EA      M   GC+ D+VTY  +++G CK   ID   
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  M Q  I P  + Y  I+ A    + + + + L  EM   G  P+V  YN +IR  
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C  G   +A  + ++M    ++P   +F  ++  F+ +G L+EA + + EM+ R +   P
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DP 359

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  +L+N      +++ AK ++  +++K C  NV  +   I        V E     
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF 419

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
            +M    ++    T+  L+ G 
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGF 441



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 210/461 (45%), Gaps = 9/461 (1%)

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           YD  +  I  L+ ++   AV  L  +M K +P     E F  L+   A        I + 
Sbjct: 47  YDYRKISINRLNDLKLDDAV-NLFGDMVKSRPFPSIVE-FSKLLSAIAKMNKFDLVISLG 104

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           ++M   G   + + +  L++  C+ S +  A A L   M+  ++P +    SLL G+C  
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHG 164

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +A  ++ QM + G++PD   +N L+ G  +  + ++A  L+  M  KGC P+  +Y
Sbjct: 165 NRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY 224

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +++  LC+   ++ A     +ME+   E  VV Y T+I   C  + ++    +   M  
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKIGCVPDVSNYNVVIRLACKLGEL 434
           +GI PN +TY  ++          +   L+ +M  RKI   P+V  ++ +I    K G+L
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN--PNVVTFSALIDAFVKEGKL 342

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  +++EM   S+ P   ++  +++GF     L EA   F+ M+ +     P   T  
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF--PNVVTYN 400

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+    +A++V+   +++  +  +G   N   +T  IH  F       A      M+  
Sbjct: 401 TLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD 460

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V+P   T++ L+ GL      + A  + E +++   E  I
Sbjct: 461 GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 173/383 (45%), Gaps = 50/383 (13%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVIN--RCGDAGNLGYRYYMWASKQPNYVHSYDVYRA 143
           S L K+E      GVV+   + + + N     DA NL +        +PN V     Y +
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL-FTEMDNKGIRPNVV----TYNS 296

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           LI+ L    ++     L+ +M  RK  P ++T   F  L+  F     + +A ++ DEM 
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVT---FSALIDAFVKEGKLVEAEKLYDEMI 353

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKEGKL 259
           K   +PD F +  L++  C +  + EA  +F+ M  ++ F P++  + +L+ G+CK  ++
Sbjct: 354 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRV 412

Query: 260 VE-----------------------------------AKYVLVQMKDAGFEPDIVVYNNL 284
            E                                   A+ V  QM   G  PDI+ Y+ L
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSIL 472

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           L G    GK+  A  + + ++R   +P+  +Y ++I+ +C+  K+E+    F  +   G 
Sbjct: 473 LDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 532

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           + +VVTYTT++SGFC+    +    +   M + G LP+  TY  ++ AH +  +     E
Sbjct: 533 KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAE 592

Query: 405 LMGEMRKIGCVPDVSNYNVVIRL 427
           L+ EMR    V D S   +V  +
Sbjct: 593 LIREMRSCRFVGDASTIGLVTNM 615


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +   +I SL  ++     ++++  M K   +P ++T   F IL+        V +A+E++
Sbjct: 113 ILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVT---FTILINGLCVKGDVGRAVELV 169

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           D + K G   D   +G L++ LCK     EA     +M ER + P++  +++++ G CK+
Sbjct: 170 DHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKD 229

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G + EA  + ++M   G +P++V Y  L+ G    G+  +A  LL EM + G  P+  S 
Sbjct: 230 GLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSL 289

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC+  K+ +A      M   G   DV TY +LI  +C   ++D    + + M+ 
Sbjct: 290 NILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVS 349

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RG LP+ + Y  ++    K + + + + L+ EM K+G  PDV  +  +I   C++G    
Sbjct: 350 RGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLA 409

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKA 495
           A  ++  M      P   +  +++ G      L EA   F  M    L L+   Y     
Sbjct: 410 AKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIY---SI 466

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +L+ +  A K+  A +++SC+  KG ++NVYA+TI I+     G + +A     +M +  
Sbjct: 467 ILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENG 526

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            MP   T+   ++GL  +  R+IA  I
Sbjct: 527 CMPDSCTYNVFVQGL--VAEREIARSI 551



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 193/412 (46%), Gaps = 8/412 (1%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAV--WALMEEMRKEKPQLITTEVFVILMRRFASA 187
           ++  Y      Y  LI  L KM K      W    E R   P ++   V+  +M      
Sbjct: 173 EKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVV---VYSTVMDGLCKD 229

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHF 246
            +V +A+ +  EM   G +P+   + CL+  LC     KEA  L DEM +    P L+  
Sbjct: 230 GLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSL 289

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             L+   CKEGK+++AK V+  M   G  PD+  YN+L+  Y    +M +A  + + M  
Sbjct: 290 NILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVS 349

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +GC P+  +YT LI   C+++ + +A     EM + G   DVVT+TTLI GFC+  +   
Sbjct: 350 RGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLA 409

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+  +M + G +PN  T   I+    K + L E + L   M K     ++  Y++++ 
Sbjct: 410 AKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILD 469

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C  G+L  A+ +++ + A  L     ++ +M++GF  QG L +A +    M   G + 
Sbjct: 470 GMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCM- 528

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
            P   T    +  L+  +++  +    + +  KG  ++     + I+ L +N
Sbjct: 529 -PDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLSTN 579



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 163/360 (45%), Gaps = 5/360 (1%)

Query: 224 SVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVY 281
           S+ EA   F  M +    PS+  FT LL    K      A  ++ +M  + G +PD  + 
Sbjct: 55  SIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFIL 114

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N +++    +  +   F +L  M + G +P+  ++T+LI  LC    +  A      +E+
Sbjct: 115 NVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEK 174

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           +G  +DV TY  LI+G CK  K       L  M +R   PN + Y  +M    K   + E
Sbjct: 175 TGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSE 234

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            + L  EM   G  P++  Y  +I+  C  G  KEA ++ +EM    + P   S  ++V 
Sbjct: 235 ALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVD 294

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               +G +++A      M+  G    P   T  +L++      +++ A  V+  +V++GC
Sbjct: 295 VLCKEGKIMQAKSVIGFMILVG--EVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGC 352

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             ++ A+T  IH      ++ +A     +M+     P   T+  L+ G  ++  R +AA+
Sbjct: 353 LPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQV-GRPLAAK 411



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 6/237 (2%)

Query: 359 CKSRK---IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK-IGC 414
           CKS K   ID       +M +   LP+ + +  ++    K +     + L+ EM   +G 
Sbjct: 48  CKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGI 107

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD    NVVI   C L  +    +V   M    L P   +F ++++G   +G +  A E
Sbjct: 108 KPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVE 167

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
               +   G  S  +  T   L+N L +  K   A      +  +    NV  ++  +  
Sbjct: 168 LVDHVEKTGYRSDVK--TYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDG 225

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           L  +G V EA   CL+M    + P   T+  L++GL      + A  + +++ KM  
Sbjct: 226 LCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGV 282


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/507 (24%), Positives = 241/507 (47%), Gaps = 12/507 (2%)

Query: 89  PKLELALQHSGVVLRPGLT------ERVINRCGDAGNLGY-RYYMWASKQPNYVHSYDVY 141
           P+  L + +S +    GLT      E +I + G AG     +  +   ++  +     + 
Sbjct: 69  PEAALRMLNSALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLV 128

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           ++ I S ++++ F   + L+            TEV+  L+   A    +K       EM 
Sbjct: 129 QSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMS 188

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260
             G EPD   F  ++DALC+    + A  + +EM      P    FT+L+ G+ +EG + 
Sbjct: 189 SQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIE 248

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A  +  +M + G  P  V  N L++GY ++G++ DA   +++    G +P+  +++  +
Sbjct: 249 AALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFV 308

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             LC+   ++ A +    M + GCE DV TY+T+I+  C + +++    I++ M+  G L
Sbjct: 309 NGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCL 368

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  T+  +++A   + +LEE ++L  E+   G  P+V  +N++I   CK+G+   AV +
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG-TLKALLNS 499
           + EM+++  +P   ++ +++      G L +A +  KEM   G    PQ   T   +++ 
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG---CPQSTVTYNTIIDG 485

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L + +++E A++V+  +   G   N   +   I  L +   + +A      M+   + P 
Sbjct: 486 LCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPN 545

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             T+  ++    K  N   AA+I + +
Sbjct: 546 NVTYNSILTHYCKQGNISKAADILQTM 572



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 190/400 (47%), Gaps = 5/400 (1%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T+    +L+  +     V  A+  + +    G EPD   F   ++ LC+N  V  A K+ 
Sbjct: 265 TSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVL 324

Query: 233 DEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
             M +E  +P +  +++++   C  G+L EAK ++ QM D+G  PD   +N L+      
Sbjct: 325 GLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTE 384

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            ++ +A +L +E+  KG  PN  ++ +LI ALC++     A R F EM+ SGC  D VTY
Sbjct: 385 NQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTY 444

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             LI   C S K+ +  ++L  M   G   + +TY  I+    K+  +EE  E+  +M  
Sbjct: 445 NILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDV 504

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   +   +N +I   C    + +A  + ++M +  L P   ++  ++  +  QG + +
Sbjct: 505 TGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISK 564

Query: 472 ACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           A +  + M   G  +    Y T   L+N L +A++ + A  +   +  KG +    A+  
Sbjct: 565 AADILQTMTANGFEVDVVTYAT---LINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNP 621

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            I SLF   + ++A S   +M +    P   T+  + RGL
Sbjct: 622 VIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGL 661



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 170/385 (44%), Gaps = 37/385 (9%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +++A  ++++M   GC PD   F  L+ ALC  + ++EA  L  E+  +   P++  F  
Sbjct: 352 LEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNI 411

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   CK G    A  +  +MK +G  PD V YN L+      GK+  A +LLKEM   G
Sbjct: 412 LINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG 471

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  +  +Y  +I  LC+  ++EEA   F +M+ +G   + +T+ TLI G C + +ID   
Sbjct: 472 CPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAA 531

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E++D MI  G+ PN +TY  I+  + K+  + +  +++  M   G   DV  Y  +I   
Sbjct: 532 ELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGL 591

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK    + A+ +   M    + P   ++  ++          +A   F+EM   G    P
Sbjct: 592 CKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVG--GPP 649

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T K +   L R                                    G +KEA  + 
Sbjct: 650 DAFTYKIVFRGLCRG----------------------------------GGPIKEAFDFL 675

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKL 573
           ++M D   +P+  +F  L  GL  L
Sbjct: 676 VEMADNGFIPEFSSFRMLAEGLLNL 700



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 5/308 (1%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F IL+           A+ + +EM   GC PDE  +  L+D LC +  + +A  L  EM
Sbjct: 408 TFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467

Query: 236 RERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                P S   + +++ G CK  ++ EA+ V  QM   G   + + +N L+ G     ++
Sbjct: 468 EVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERI 527

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            DA EL+ +M  +G  PN  +Y  ++   C+   + +A      M  +G E DVVTY TL
Sbjct: 528 DDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATL 587

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I+G CK+R+     ++L  M  +G+ P    Y  ++ +  +     + + L  EM ++G 
Sbjct: 588 INGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGG 647

Query: 415 VPDVSNYNVVIRLACK-LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC---LI 470
            PD   Y +V R  C+  G +KEA +   EM      P   SF ++  G L  G    LI
Sbjct: 648 PPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLI 707

Query: 471 EACEYFKE 478
            A E   E
Sbjct: 708 RAIELIVE 715


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 225/466 (48%), Gaps = 6/466 (1%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
           +L ++ Y    K  N V+ Y +   ++ +L K  K   V   + EM +EK        + 
Sbjct: 206 DLAWKVYEDFVKSGNIVNVYTL-NIMVNALCKDGKLDNVGVYLSEM-EEKGVYADLVTYN 263

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
            L+  +    +V +A  ++D M   G +P  F +  L++ LCK  S + A ++ DEM   
Sbjct: 264 TLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGV 323

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P+   F  +L   C++  + EA+ V  +M   G  PD++ +++++  +++ G++  A
Sbjct: 324 GLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRA 383

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
               ++M+  G  P+   YT+LI   CR + +  A +   EM   GC  DVVTY TL++G
Sbjct: 384 LAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNG 443

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C+ + +D   E+   M++RG+ P+  T   ++  + K   + + + L   M      PD
Sbjct: 444 LCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPD 503

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN ++   CK+GE+++A  +W +M +  + P   SF ++++GF   G + EA   + 
Sbjct: 504 VVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWD 563

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM  +G+   P   T   ++   LRA  +  A D  + ++++G   +   +   I+S   
Sbjct: 564 EMKEKGI--KPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVK 621

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
             +   A     +M +  ++P   T+  ++ G  + + R   AE+ 
Sbjct: 622 EENFDRAFFLINNMEERGLLPNLVTYNAILGGFSR-HGRMQEAEMV 666



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 187/351 (53%), Gaps = 2/351 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +++   S+  + G   A  E+M K    +  T ++ IL+  +     V  A+++ +EM
Sbjct: 367 FSSIVGVFSRNGELGRALAYFEKM-KGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEM 425

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + GC  D   +  LL+ LC+   + +A +LF EM ER   P     T+L++G+CK+G +
Sbjct: 426 VERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNM 485

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +   M     +PD+V YN L+ G+ ++G+M  A EL  +M  +   P+  S+++L
Sbjct: 486 TKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSIL 545

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C +  + EA R + EM+  G +  +VT  T+I G+ ++  + +  + L++MI  G+
Sbjct: 546 INGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGV 605

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++ +  K+E  +    L+  M + G +P++  YN ++    + G ++EA  
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEM 665

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           V ++M    ++P   ++  +++G++ +  + EA     EM+ RG +   ++
Sbjct: 666 VLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF 716



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 201/432 (46%), Gaps = 20/432 (4%)

Query: 168 KPQLITTEV-FVILMRRFASA-----RMVKKA----IEVLDEMPKYGCEPDE-----FVF 212
            P +I T + F++  ++   A     R+++K+    +EV+D +               VF
Sbjct: 98  NPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVVVF 157

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
             L+    +   ++E ++ F  +R+R F  S+    +LL    K G +  A  V      
Sbjct: 158 DLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVK 217

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
           +G   ++   N +++   + GK+ +    L EM  KG   +  +Y  L+ A CR   + E
Sbjct: 218 SGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSE 277

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A      M   G +  + TY  LI+G CK    +R   +LD M+  G+ PN  T+  +++
Sbjct: 278 AFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLV 337

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              +KE++ E   +  EM + G VPD+ +++ ++ +  + GEL  A+  + +M+   L P
Sbjct: 338 ESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVP 397

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNSLLRAQKVEMAK 510
            T  + ++++G+     +  A +   EMV RG ++    Y T   LLN L R + ++ A 
Sbjct: 398 DTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNT---LLNGLCRGKMLDDAD 454

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +++  +V +G   + Y  T  IH    +G++ +A S    M    + P   T+  LM G 
Sbjct: 455 ELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGF 514

Query: 571 KKLYNRQIAAEI 582
            K+   + A E+
Sbjct: 515 CKVGEMEKAKEL 526



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 2/339 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L+  + +  KL E       ++  GF   I   N LL    ++G +  A+++ ++  
Sbjct: 157 FDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFV 216

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           + G   N  +  +++ ALC+  K++       EME  G  AD+VTY TL++ +C+   + 
Sbjct: 217 KSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVS 276

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             + ++D M  +G+ P   TY  ++    K+   E    ++ EM  +G  P+ + +N ++
Sbjct: 277 EAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPML 336

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             +C+  ++ EA  V+NEM    + P   SF  +V  F   G L  A  YF++M G GL+
Sbjct: 337 VESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLV 396

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P       L+N   R   V  A  + + +V +GC ++V  +   ++ L     + +A 
Sbjct: 397 --PDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDAD 454

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
               +M++  V P   T   L+ G  K  N   A  + E
Sbjct: 455 ELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFE 493


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 228/451 (50%), Gaps = 15/451 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  IT      LM+       VKK++   D++   G + D+  +  LL+ LCK    + 
Sbjct: 77  QPNTITLNT---LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRS 133

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLL 285
           A KL   + +R  +P++  + +++ G CK+ KLV   Y L    DA G  P+++ Y+ L+
Sbjct: 134 ALKLLRMIEDRSTRPNVVMYNTIIDGLCKD-KLVNEAYDLYSEMDARGIFPNVITYSTLI 192

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   G++ +AF LL EM  K  +PN  +YT+L+ ALC+  K++EA      M + G +
Sbjct: 193 YGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVK 252

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVE 404
            +VV+Y TL+ G+C   ++    ++  +M+Q+G+ PN  +Y +IM+    K + ++E + 
Sbjct: 253 PNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSY-NIMIDRLCKSKRVDEAMN 311

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ E+     VP+   Y+ +I   CKLG +  A+++  EM          ++  ++    
Sbjct: 312 LLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALC 371

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
               L +A   F +M  RG+   P   T  AL++ L +  + + A+ ++  ++ KGC +N
Sbjct: 372 KNQNLDKATALFMKMKERGI--QPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRIN 429

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           V+ + + I  L   G + EA +    M +   +P   TF  ++R    L+ +    +  +
Sbjct: 430 VWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRS---LFEKDQNDKAEK 486

Query: 585 KVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
            + +M A+  + F+ +   GER   E  K +
Sbjct: 487 LLHEMIAKDLLRFRDF--HGERSPNENDKAE 515



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 187/382 (48%), Gaps = 8/382 (2%)

Query: 141 YRALIKSLSKMRKFGAVWAL--MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K+ +  +   L  M E R  +P ++   ++  ++      ++V +A ++  
Sbjct: 118 YATLLNGLCKIGETRSALKLLRMIEDRSTRPNVV---MYNTIIDGLCKDKLVNEAYDLYS 174

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  L+   C    + EA  L +EM  +   P++  +T L+   CKEG
Sbjct: 175 EMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEG 234

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK +L  M   G +P++V YN L+ GY  +G++ +A ++   M +KG +PN  SY 
Sbjct: 235 KVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYN 294

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  LC+ ++++EA     E+       + VTY++LI GFCK  +I    ++L  M  R
Sbjct: 295 IMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   + +TY  ++ A  K + L++   L  +M++ G  P+   Y  +I   CK G  K A
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNA 414

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++  +          ++ VM+ G   +G L EA     +M   G +  P   T + ++
Sbjct: 415 QKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCI--PDAVTFEIII 472

Query: 498 NSLLRAQKVEMAKDVWSCIVTK 519
            SL    + + A+ +   ++ K
Sbjct: 473 RSLFEKDQNDKAEKLLHEMIAK 494



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 194/381 (50%), Gaps = 3/381 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLY 251
           AI +  +M   G EPD F    L++  C    +  +  +  + ++  ++P+     +L+ 
Sbjct: 29  AISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMK 88

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C +G++ ++ +   ++   GF+ D V Y  LL+G  ++G+   A +LL+ +  +   P
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRP 148

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N   Y  +I  LC+ + + EA   + EM+  G   +V+TY+TLI GFC + ++   + +L
Sbjct: 149 NVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLL 208

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + MI + I PN  TY  +M A  K+ +++E   L+  M K G  P+V +YN ++   C +
Sbjct: 209 NEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLI 268

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           GE++ A  +++ M    ++P   S+ +M+        + EA    +E++ + ++  P   
Sbjct: 269 GEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMV--PNTV 326

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L++   +  ++  A D+   +  +G   +V  +T  + +L  N ++ +A +  + M
Sbjct: 327 TYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKM 386

Query: 552 MDADVMPQPDTFAKLMRGLKK 572
            +  + P   T+  L+ GL K
Sbjct: 387 KERGIQPNKYTYTALIDGLCK 407



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 187/396 (47%), Gaps = 52/396 (13%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFAS 186
           S +PN V    +Y  +I  L K +     + L  EM  R   P +IT   +  L+  F  
Sbjct: 145 STRPNVV----MYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT---YSTLIYGFCL 197

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRH 245
           A  + +A  +L+EM      P+ + +  L+DALCK   VKEA  L   M +E  KP++  
Sbjct: 198 AGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVS 257

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI--------------------------- 278
           + +L+ G+C  G++  AK +   M   G  P++                           
Sbjct: 258 YNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVL 317

Query: 279 --------VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
                   V Y++L+ G+ ++G++T A +LLKEM  +G   +  +YT L+ ALC+ + ++
Sbjct: 318 HKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLD 377

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           +A   F++M+  G + +  TYT LI G CK  +     ++   ++ +G   N  TY ++M
Sbjct: 378 KATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTY-NVM 436

Query: 391 LAHEKKEE-LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           ++   KE  L+E + +  +M + GC+PD   + ++IR   +  +  +A  + +EM A  L
Sbjct: 437 ISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDL 496

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               D      HG        +A +   EM+ +GLL
Sbjct: 497 LRFRD-----FHGERSPNENDKAEKLLHEMIAKGLL 527



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 185/411 (45%), Gaps = 23/411 (5%)

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           R  P +  F  ++    K      A  +  QM+  G EPD+   N L++ +  +G+MT +
Sbjct: 5   RDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFS 64

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           F +L ++ + G  PN  +   L++ LC   +++++     ++   G + D V+Y TL++G
Sbjct: 65  FTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNG 124

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK  +     ++L  +  R   PN + Y  I+    K + + E  +L  EM   G  P+
Sbjct: 125 LCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPN 184

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  Y+ +I   C  G+L EA  + NEM   +++P   ++ +++     +G + EA     
Sbjct: 185 VITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLA 244

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            M   G+   P   +   L++      +V+ AK ++  +V KG   NVY++ I I  L  
Sbjct: 245 VMTKEGV--KPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCK 302

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRG-------------LKKLYNRQIAAEITE 584
           +  V EA +   +++  +++P   T++ L+ G             LK++Y+R   A++  
Sbjct: 303 SKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVT 362

Query: 585 KVRKMAA--------ERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRR 627
               + A        +    F   K RG +  K      +DG  +  R + 
Sbjct: 363 YTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKN 413


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 193/401 (48%), Gaps = 7/401 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS- 149
           +E AL  S V L   +  +++ R        +R++ WA  Q +Y H    Y  +I  LS 
Sbjct: 10  MEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 69

Query: 150 ---KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
              K ++F  V  +++ M++ K  ++  ++ + ++R++    +         +  +   +
Sbjct: 70  TKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYCERYLTHVQKFAKRKRIRVKTQ 129

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           P+   F  LLDALCK   VKE   L   MR R KP    F  L +GWC+     +A  +L
Sbjct: 130 PEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDPKKAMKLL 189

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC---DPNANSYTVLIQAL 323
            +M  AG +P+   Y   +  + Q G + +A +L + M  KG     P A ++ ++I AL
Sbjct: 190 EEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFALMIVAL 249

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            + +K EE       M  +GC  DV TY  +I G C + K++  Y+ LD M  +G  P+ 
Sbjct: 250 AKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPPDI 309

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +TY   +    +  + +E ++L G M +  C P V  YN++I +  ++ +   A N W E
Sbjct: 310 VTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWKE 369

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           M+        +++ VM++G        EAC   +E+V +GL
Sbjct: 370 MDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGL 410



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 11/347 (3%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+I  +N LL    + G + +   LL+ MR +   P+A ++ VL    CR+   ++A +
Sbjct: 129 QPEINAFNMLLDALCKCGLVKEGEALLRRMRHR-VKPDATTFNVLFFGWCRVRDPKKAMK 187

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIML 391
              EM ++G + +  TY   I  FC++  +D   ++ + MI +G +   P   T+  +++
Sbjct: 188 LLEEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFALMIV 247

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K ++ EEC EL+G M   GC+PDVS Y  VI   C  G+++EA    +EM      P
Sbjct: 248 ALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPP 307

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLLRAQKVEMA 509
                +V  + FL   C     +   ++ GR + S  AP   T   L++        + A
Sbjct: 308 D----IVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGA 363

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            + W  +  + C  ++  + + I+ LF     KEAC    ++++  +      F   +  
Sbjct: 364 FNTWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMR 423

Query: 570 LKKLYNRQIAAEITEKVRKMAAERQI-TFKMYKRRGERDLKEKAKKQ 615
           L  + N +   +++E ++K         F + ++R    L+ K K Q
Sbjct: 424 LSTVGNLKAIHKLSEHMKKFYNHSMARRFALSEKRKSTKLRGKFKSQ 470


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 201/420 (47%), Gaps = 49/420 (11%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLY 251
           V   MP+ G  PD F +  L+  LC     +EA +L   M         P++  +++++ 
Sbjct: 152 VFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIID 211

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+ KEG++ +A ++  +M   GF PD+V Y++L+ G  +   M  A  +L+ M  KG  P
Sbjct: 212 GFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMP 271

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE-- 369
           N  +Y ++I+  C + ++EEA R   +M  SG + DVVTY  LI  +CK   I RC E  
Sbjct: 272 NTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCK---IGRCAEAR 328

Query: 370 -ILDSMIQRGILPNQLTYLHIML------------------------------------A 392
            + DSM+++G  PN   Y HI+L                                    A
Sbjct: 329 SVFDSMVRKGQKPNSTIY-HILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICA 387

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           + K   +++ +    EMR+ G  PDV +Y+ VI + CK+G +++AV  +N+M +  LSP 
Sbjct: 388 YAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPN 447

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             SF  ++HG    G   +  E   EM+ RG+   P    +  ++++L +  +V  A+D 
Sbjct: 448 IISFTSLIHGLCSIGEWKKVEELAFEMINRGI--HPDAIFMNTIMDNLCKEGRVVEAQDF 505

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  ++  G + NV ++   I      G + E+      M+   + P   T+  L+ G  K
Sbjct: 506 FDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFK 565



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 231/475 (48%), Gaps = 6/475 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  L K +      A+++ M  +K  +  T  + I++R + S   +++A+ +L +M
Sbjct: 241 YSSLIDGLCKAQAMNKAEAILQHMF-DKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKM 299

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G +PD   +  L+   CK     EA  +FD M R+  KP+   +  LL+G+  +G L
Sbjct: 300 SGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGAL 359

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           ++ + +L  M   G   +   +N L+  YA+ G +  A     EMR+ G  P+  SY+ +
Sbjct: 360 IDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 419

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC++ ++E+A   F +M   G   +++++T+LI G C   +  +  E+   MI RGI
Sbjct: 420 IHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGI 479

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +    IM    K+  + E  +    +  IG  P+V +YN +I   C +G++ E++ 
Sbjct: 480 HPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIK 539

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            ++ M +  L P + ++  +++G+   G + +A   ++EM  + +       T   +L+ 
Sbjct: 540 QFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAI--TSNIILHG 597

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L +A ++  A++++  +V +G +L +  +   +  L  N  V EA     D+   +    
Sbjct: 598 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 657

Query: 560 PDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAAERQITFK-MYKRRGERDLKEKA 612
             TF  ++  L K+     A  + +  V +      IT+  M K R E  L E++
Sbjct: 658 VWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEES 712



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 151/348 (43%), Gaps = 41/348 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K+ +         +M  E   P +I+   F  L+    S    KK  E+  
Sbjct: 416 YSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIIS---FTSLIHGLCSIGEWKKVEELAF 472

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD      ++D LCK   V EA   FD  +    KP++  + +L+ G+C  G
Sbjct: 473 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVG 532

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG---CDPNAN 314
           K+ E+     +M   G  PD   YN LL+GY + G++ DA  L +EM RK    C   +N
Sbjct: 533 KMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSN 592

Query: 315 --------------------------------SYTVLIQALCRMEKMEEANRAFVEMERS 342
                                           +Y  ++  LC    ++EA R F ++   
Sbjct: 593 IILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSK 652

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
             E DV T+  +I+   K  +ID    +  +M+ RG +P+ +TY  ++ +  ++  LEE 
Sbjct: 653 EFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEES 712

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
            +L   M K GC  D    NV+IR   + G+++ A     +++  + S
Sbjct: 713 DDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFS 760



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 207/482 (42%), Gaps = 56/482 (11%)

Query: 76  KIFRILKKFHSRLPKLELAL----QHSGVVLRPGLTERV--------INRCGDAGNLGYR 123
           + + I+ + +  L +LE A+    + SG  L+P +   +        I RC +A ++ + 
Sbjct: 274 RTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSV-FD 332

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
             +   ++PN      +Y  L+   +       V  L++ M ++         F IL+  
Sbjct: 333 SMVRKGQKPNST----IYHILLHGYATKGALIDVRDLLDLMIRDGIPF-EHRAFNILICA 387

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
           +A    V KA+    EM + G  PD   +  ++  LCK   V++A   F++M  E   P+
Sbjct: 388 YAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPN 447

Query: 243 LRHFTSLLYG------W-----------------------------CKEGKLVEAKYVLV 267
           +  FTSL++G      W                             CKEG++VEA+    
Sbjct: 448 IISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFD 507

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
            +   G +P++V YN L+ GY  +GKM ++ +    M   G  P++ +Y  L+    +  
Sbjct: 508 MVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNG 567

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           ++E+A   + EM R   +   +T   ++ G  ++ +I    E+   M+ RG      TY 
Sbjct: 568 RVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYN 627

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++    +   ++E + +  ++R      DV  +N+VI    K+G + EA ++++ M   
Sbjct: 628 TVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLR 687

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   ++ +M+   + +G L E+ + F  M   G   A     L  ++  LL    V 
Sbjct: 688 GPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNG--CAADSHMLNVIIRRLLEKGDVR 745

Query: 508 MA 509
            A
Sbjct: 746 RA 747



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 42/278 (15%)

Query: 297 AFELLKEMRRKGCDP-NANSYTV--LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           A  L   M R G +   AN Y +  LI+  C + +++ A  AF    + G     VT   
Sbjct: 75  AVSLFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQ 134

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI G C  ++ D   + +D + +R                               M ++G
Sbjct: 135 LIKGLCDGKRTD---DAMDMVFRR-------------------------------MPELG 160

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA---SLSPGTDSFVVMVHGFLGQGCLI 470
             PDV +YN +I+  C   + +EA+ +   M A    + SP   S+  ++ GF  +G + 
Sbjct: 161 YTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVD 220

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A   F EM+G+G    P   T  +L++ L +AQ +  A+ +   +  KG   N   + I
Sbjct: 221 KAYFLFDEMIGQGF--PPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNI 278

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
            I    S G ++EA      M  + + P   T+  L++
Sbjct: 279 MIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQ 316


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 201/398 (50%), Gaps = 3/398 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  ++     A  + + I +  +M +  C P    +  ++ AL  N    E   LF+EMR
Sbjct: 287 YTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMR 346

Query: 237 ERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           ER  +P++  +T ++   CKE KL E++ +L +M + G  P +V YN L+ GY + G++ 
Sbjct: 347 ERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIE 406

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A E+L  M    C PN  +Y  LI    + + + +A     +M  S     +VTY +LI
Sbjct: 407 AALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLI 466

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
              CK+   D  Y++LD + + G++P+Q TY   +    K + +EE  +L   +++ G  
Sbjct: 467 HVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIK 526

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +   Y  +I   CK G++ EA+++   M +    P + ++  +++G   +G + E    
Sbjct: 527 ANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSM 586

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            + M   G+   P   T   L+  +LR    + A  V++ +V+ G + +VY +T +IH+ 
Sbjct: 587 VENMSKMGV--KPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTY 644

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            ++G+VKEA      M++A VMP   T+  L+   ++L
Sbjct: 645 CTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERL 682



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 131/579 (22%), Positives = 264/579 (45%), Gaps = 43/579 (7%)

Query: 4   SSSKALSLLTKHRRFSFAPR-----PNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCN 58
           SS   LS+L+ H ++   P      PN + SHV S       LN N+             
Sbjct: 56  SSHHFLSILS-HPKWQRHPSFQKLIPNLSPSHVSSLFNNHPDLNPNIAL----------- 103

Query: 59  NTTDTHGSHNEFSHDVEKI---FRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCG 115
                     +F + +  I   F+   K HS L K+ +     GV  +  ++  +I  C 
Sbjct: 104 ----------QFFNSLPLIKPGFKHTVKSHSFLLKILIPNNLFGVGEKIRIS--MIKACV 151

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL---- 171
              ++  R+ +   +Q N   +   ++  ++S +++    A + +++EM++   ++    
Sbjct: 152 SVDDI--RFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDM 209

Query: 172 ITTEVFVILMRRFASARM--VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           I   ++ +     A ++M  + +A   + ++ + G  PD F +  L+   C+N+ V  A 
Sbjct: 210 IVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAY 269

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           K+F+ M  +  + +   +T++++G C+ G++ E   +  +M++    P +  Y  ++   
Sbjct: 270 KVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
               +  +  +L  EMR + C+PN ++YTV++ A+C+  K++E+ R   EM   G    V
Sbjct: 330 FGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSV 389

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           VTY  LI G+C+  +I+   EIL  M      PN+ TY  ++    K++ + + + L+ +
Sbjct: 390 VTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSK 449

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M +    P +  YN +I + CK G    A  + + ++   L P   ++ V +        
Sbjct: 450 MLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKR 509

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           + EAC+ F  +  +G+ +     T  AL++   +A K++ A  +   + ++ C  N   +
Sbjct: 510 MEEACDLFNSLKEKGIKANEVMYT--ALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTY 567

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
              I+ +   G V+E  S   +M    V P   T+  L+
Sbjct: 568 NSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILI 606



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 203/429 (47%), Gaps = 41/429 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I  L +  +     +L ++MR++          VI+   F + R ++  +++ +EM
Sbjct: 287 YTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLE-GMDLFNEM 345

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +  CEP+   +  ++DA+CK   + E+ ++ +EM E+   PS+  + +L+ G+C+EG++
Sbjct: 346 RERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRI 405

Query: 260 VEA-----------------------------KYV------LVQMKDAGFEPDIVVYNNL 284
             A                             K+V      L +M ++   P +V YN+L
Sbjct: 406 EAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSL 465

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +    + G    A++LL  ++  G  P+  +Y+V I  LC+ ++MEEA   F  ++  G 
Sbjct: 466 IHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGI 525

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           +A+ V YT LI G CK+ KID    +L+ M     LPN  TY  ++    K+ +++E + 
Sbjct: 526 KANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLS 585

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           ++  M K+G  P V+ Y ++I    + G+   A  V+N+M +    P   ++   +H + 
Sbjct: 586 MVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYC 645

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             G + EA      M+  G++  P   T   L+++  R      A +V   ++  GC+ +
Sbjct: 646 TSGNVKEAEGMMARMIEAGVM--PDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPS 703

Query: 525 VYAWT--IW 531
              W   IW
Sbjct: 704 HPIWNNLIW 712



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 110/276 (39%), Gaps = 41/276 (14%)

Query: 298 FELLKEMRRKGCDP----NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
            + L++M R   D     +  SY  L+  L R   ++E  R + EM       ++ T  T
Sbjct: 160 LDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNT 219

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +++ + K   I      +  + Q G+ P+  TY  ++L + +  ++    ++   M   G
Sbjct: 220 MVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKG 279

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C  +  +Y  +I   C+ G + E ++++ +M      P   ++ V++H   G    +E  
Sbjct: 280 CRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGM 339

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           + F EM  R                                      CE NV+ +T+ + 
Sbjct: 340 DLFNEMRERS-------------------------------------CEPNVHTYTVMVD 362

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           ++     + E+     +MM+  ++P   T+  L+RG
Sbjct: 363 AMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRG 398



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 2/153 (1%)

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V +YN ++ +  +   + E   V+ EM    + P   +   MV+ +   G ++EA  Y  
Sbjct: 179 VRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVS 238

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           ++   GL  +P   T  +L+    R   V  A  V++ +  KGC  N  ++T  IH L  
Sbjct: 239 KIFQAGL--SPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCE 296

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            G + E  S    M + D  P   T+  ++  L
Sbjct: 297 AGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 218/466 (46%), Gaps = 73/466 (15%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F I++  +      K A+E L+ M KY C PD   +  +LD LCK   + +A  L  +M
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDM 269

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV--------------------------- 267
           + R   P+   +  L+YG+CK G L EA  V+                            
Sbjct: 270 KSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRI 329

Query: 268 --------QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
                   +M++    PD+V YN L++G  +  K+++AF+LL+EM  KG  PNA ++ ++
Sbjct: 330 EEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIM 389

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS------------------ 361
           ++  C+  KM++A+    +ME SG   D VTY TLI+G+CK+                  
Sbjct: 390 VKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNM 449

Query: 362 -----------------RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                            +K++  Y++L S  +RG   ++++Y  +++ + K   ++  ++
Sbjct: 450 KMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALK 509

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  EM++   +P    YN +I   C+ G+ ++A++  NE+  + L P   ++  ++HG+ 
Sbjct: 510 LWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYC 569

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G + +A ++  +MV       P   T   LL  L     +E A  +++  V+KG  ++
Sbjct: 570 REGDVEKAFQFHNKMVENSF--KPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAID 627

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              +   I SL   G + +A +   +M + ++ P   T+  ++  L
Sbjct: 628 TVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITAL 673



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 193/382 (50%), Gaps = 6/382 (1%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCK---NSSVKEAAKLF-DEMRERFKPSLRHFTS 248
           A ++  +M +    P+      LL++L +   + SV  + + F D ++    P++  F  
Sbjct: 154 AFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++YG+C E K  +A   L  M      PD V YN +L    + G++ DA +LL +M+ +G
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRG 273

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN N+Y +L+   C+M  ++EA      M ++    DV TY  LI+G C   +I+  +
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAF 333

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ D M    +LP+ ++Y  ++    +  ++ E  +L+ EM + G  P+   +N++++  
Sbjct: 334 KLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWY 393

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G++ +A N   +ME +  SP   ++  +++G+   G + EA     EM GR  +   
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEM-GRKNMKMD 452

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              TL  +L +L R +K+E A  + S    +G  ++  ++   I   F +G+V  A    
Sbjct: 453 SV-TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLW 511

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
            +M + +++P   T+  ++ GL
Sbjct: 512 DEMKEKEIIPSTVTYNCIIGGL 533



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/521 (23%), Positives = 232/521 (44%), Gaps = 71/521 (13%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQ 170
           R GDA +L     +   K    + + + Y  L+    KM        ++E M +    P 
Sbjct: 258 RLGDARDL-----LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           + T   + +L+    +   +++A ++ DEM      PD   +  L++   + S + EA K
Sbjct: 313 VWT---YNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFK 369

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           L +EM E+  KP+      ++  +CKEGK+ +A   + +M+++GF PD V YN L++GY 
Sbjct: 370 LLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYC 429

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G M +AF  + EM RK    ++ +   +++ LCR +K+EEA +      + G   D V
Sbjct: 430 KAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEV 489

Query: 350 TYTTL-----------------------------------ISGFCKSRKIDRCYEILDSM 374
           +Y TL                                   I G C+  K ++    L+ +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           ++ G+LP++ TY  I+  + ++ ++E+  +   +M +    PDV   N+++R  C  G L
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVL 609

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           ++A+ ++N   +   +  T ++  ++     +G L +A     EM  + L   P + T  
Sbjct: 610 EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKEL--GPDHYTYN 667

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKG------CELN-----------------VYAWTIW 531
           A++ +L  + ++  A++  S ++ KG       +L+                   A++ W
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEW 727

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           I  L + G  K+A     +     +     T+  LM GL K
Sbjct: 728 IKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIK 768



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 155/352 (44%), Gaps = 8/352 (2%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN-- 333
           P   + +  +  Y Q G+   AF++ K+M+R    PN  +   L+ +L R       +  
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 334 -RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
             AF +  + G   +V T+  +I G+C   K     E L+ M +    P+ +TY  I+  
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDT 252

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             KK  L +  +L+ +M+  G +P+ + YN+++   CK+G LKEA NV   M   +L P 
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++ ++++G   +G + EA +   EM    LL  P   +   L+N  L   K+  A  +
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLL--PDVVSYNTLINGCLEWSKISEAFKL 370

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +  KG + N     I +      G + +A +    M ++   P   T+  L+ G  K
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 573 LYNRQIAAEITEKV-RKMAAERQITFKMYKRR--GERDLKEKAKKQVDGRKR 621
             N   A    +++ RK      +T     R    E+ L+E  K     RKR
Sbjct: 431 AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 117/271 (43%), Gaps = 26/271 (9%)

Query: 118 GNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
           GN+     +W   K+   + S   Y  +I  L +  K     + + E+  E   L     
Sbjct: 502 GNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELL-ESGLLPDETT 560

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  ++  +     V+KA +  ++M +   +PD F    LL  LC    +++A KLF+   
Sbjct: 561 YNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWV 620

Query: 237 ERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            + K      + +L+   CKEG+L +A  +L +M++    PD   YN +++     G++ 
Sbjct: 621 SKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIR 680

Query: 296 DAFELLKEMRRKGCDPN-----------------------ANSYTVLIQALCRMEKMEEA 332
           +A E + +M  KG  P+                       + +Y+  I+ LC   K ++A
Sbjct: 681 EAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDA 740

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
            R F E ++ G   D  TY  L+ G  K RK
Sbjct: 741 MRIFGESKQKGITVDKSTYINLMDGLIKRRK 771


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 255/529 (48%), Gaps = 17/529 (3%)

Query: 70  FSHDV----EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRY 124
           ++H V    E+  RILK F    P  E AL+   + +   L   V+    D G N+  ++
Sbjct: 20  YTHSVRVLDERFIRILKIFKWG-PDAEKALEVLMLRVDHWLVREVMKT--DVGVNVKMQF 76

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA+K+ NY H    Y ALI  L  + ++G +W +++EM +    ++T      ++R  
Sbjct: 77  FRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRML 136

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS 242
            +A+MV++AI +  ++    C+P    +  ++  L      ++  +L++EM       P 
Sbjct: 137 GNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPD 196

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              +++L+  +CK G+   A  +L +MK+ G +P   +Y  L++ + +      A  L +
Sbjct: 197 TVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFE 256

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EMR + C P+  +YT LI+ L +  +++EA   F EM+R GC  D V    +I+   K+ 
Sbjct: 257 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 316

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNY 421
           ++D   ++   M     +P+ +TY  I+ A  E K    E       M++ G  P    Y
Sbjct: 317 RLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 376

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMV 480
           +++I   CK   +++A+ +  EM+     P   ++  ++   LG+    + ACE F+E+ 
Sbjct: 377 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELK 435

Query: 481 GR-GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G  SA  Y     ++  L +A +++ A +++  +   GC  +VYA+   +  L   G
Sbjct: 436 ENCGSSSARVYAV---MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTG 492

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            + EA S    M +   +P  +++  ++ GL K      A E+   +++
Sbjct: 493 MLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQ 541



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 162/349 (46%), Gaps = 7/349 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI    K        +L EEMR +  +P + T   +  L+R    A  + +A    
Sbjct: 234 IYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFT---YTELIRGLGKAGRIDEAYHFF 290

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG-WCK 255
            EM + GC PD      +++ L K   + +A KLF EM   R  PS+  + +++   +  
Sbjct: 291 CEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFES 350

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + +  E      +MK++G  P    Y+ L+ G+ +  +M  A  LL+EM  KG  P   +
Sbjct: 351 KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAA 410

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI AL + ++ + A   F E++ +   +    Y  +I    K+ ++D    + D M 
Sbjct: 411 YCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMN 470

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  P+   Y  +M    +   L+E +  M  M++ GC+PD+++YN+++    K G   
Sbjct: 471 KLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPH 530

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            A+ + + M+ +++ P   S+  ++      G   EA +  KEM   G 
Sbjct: 531 RAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGF 579



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 6/326 (1%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNYVHSYDVY-RALIKSLSKMRKFGAVWALMEEMRKEK 168
           +I   G AG +   Y+ +   Q        V+   +I  L K  +      L +EM   +
Sbjct: 273 LIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLR 332

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P ++T     I+   F S     +     + M + G  P  F +  L+D  CK + ++
Sbjct: 333 CIPSVVTYNT--IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRME 390

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A  L +EM E+ F P    + SL+    K  +   A  +  ++K+        VY  ++
Sbjct: 391 KAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMI 450

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
               + G++ DA  +  EM + GC P+  +Y  L+  L R   ++EA      M+  GC 
Sbjct: 451 KHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCI 510

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            D+ +Y  +++G  K+    R  E+L +M Q  + P+ ++Y  ++ A       EE  +L
Sbjct: 511 PDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKL 570

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKL 431
           M EM  +G   D+  Y+ ++    K+
Sbjct: 571 MKEMNTLGFEYDLITYSSILEAIGKV 596



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +L K +++     L +E+ KE     +  V+ ++++    A  +  AI + DEM
Sbjct: 411 YCSLIDALGKAKRYDLACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 469

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K GC PD + +  L+  L +   + EA      M+E    P +  +  +L G  K G  
Sbjct: 470 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGP 529

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L  MK +   PD+V YN +L   +  G   +A +L+KEM   G + +  +Y+ +
Sbjct: 530 HRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSI 589

Query: 320 IQALCRME 327
           ++A+ +++
Sbjct: 590 LEAIGKVD 597


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 201/412 (48%), Gaps = 9/412 (2%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L T   + +L+     A  V++A +V +EM + G +PD   +  L+D L K   V E
Sbjct: 195 EPTLFT---YTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDE 251

Query: 228 AAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A KL D M  R  P +   +TS++ G CK G++ EA   + +M+     P +  Y+ +++
Sbjct: 252 ARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVT 311

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           GY  MGK+  AF +++EM  + C P+  SYT+ I+AL  + + EEA + F  M   GC+ 
Sbjct: 312 GYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKP 371

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+ TY  +I  FCK   +     +L  M +  + PN+  Y  IM    K   LEE +EL 
Sbjct: 372 DMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELY 431

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME--AASLSPGTDSFVVMVHGFL 464
             + K G +P    YN VI   CKL ++ EA+ +  EM+     L P   ++ +++HG  
Sbjct: 432 QRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLG 491

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             G    A +   EM+  G++  P   T  +L+ +L  A KV  A ++   ++  G   +
Sbjct: 492 KVGMEERAFDLLAEMIDNGVI--PDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPD 549

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
            + +   +  +     V  A     +MM     P   TF  + +G +   +R
Sbjct: 550 DHTYGTLVQ-ILCRSDVDAAWDLLQEMMRNGHTPNEFTFKAVEKGFRLQLDR 600



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 172/354 (48%), Gaps = 7/354 (1%)

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R  F  +L    SLL    + G L +A   L   + +  EP++  +N LL G+A      
Sbjct: 89  RPGFSHTLFTRNSLLLALVRGGHLSDA---LGFFQSSISEPNVSSFNILLRGFAARDDFE 145

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
               LL+EM+ +G   N  ++ V++ ALC    +++A   F  +  + CE  + TYT L+
Sbjct: 146 VVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLV 205

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G CK+ K++R  ++ + MI++G  P+ + Y  ++    K   ++E  +L+  M   G  
Sbjct: 206 DGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPP 265

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P    Y  ++   CK G ++EAV    EM    L P  D++  +V G++G G + +A   
Sbjct: 266 PTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAV 325

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +EM  R    AP   +    + +L    + E A+ V+  +V KGC+ +++ + I I + 
Sbjct: 326 MEEMADRD--CAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNF 383

Query: 536 FSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              G +  A ++ L +MD A V P    +  +M G  K    + A E+ +++ K
Sbjct: 384 CKEGSMA-AATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILK 436


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 215/437 (49%), Gaps = 5/437 (1%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D++K+  ILK+       +  AL  SG+     L  +++ R  +        ++WA  Q 
Sbjct: 34  DIDKVKGILKRHFPSEDAVVKALDESGINATNDLVSQLLERFSNQWITALGVFIWAKNQT 93

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            YVH+  +Y  ++  L K +KFG +W ++ EM +   Q ++     I++RR AS+ M K 
Sbjct: 94  GYVHTPRLYDLVVDILGKCKKFGIMWKVVNEMNELNGQ-VSFSTMSIVVRRLASSGMYKD 152

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
            I+VL  + KY  + D      ++ AL K    K+A  +F E ++        F  L++G
Sbjct: 153 VIDVLRGLEKYRVKKDTVALNMVMHALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHG 212

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +C+   L +A+  + +M+  GF PD   Y   +  Y +     +   +L EM  KGC+P+
Sbjct: 213 YCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPD 272

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y++ I+AL +  K+ EA   + +M ++ C+ D   ++TLI    +S +++  + + +
Sbjct: 273 VIAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFE 332

Query: 373 SMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
            M   G+  +  TY + M+ H     +    ++L+  M    C PD+  Y  ++++ CK+
Sbjct: 333 DMENHGVSRDLWTY-NAMIYHACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCKM 391

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            ++K    + + M   ++     ++ +++      G L  AC +F++ V  G++  P+  
Sbjct: 392 KDMKVLKFLLSHMFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVLNGIV--PKDR 449

Query: 492 TLKALLNSLLRAQKVEM 508
           T + LL  L +   VEM
Sbjct: 450 TYEILLKELGQNNMVEM 466



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 138/296 (46%), Gaps = 7/296 (2%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D V  N ++   A+ G   DA+ +  E +      +++S+ +LI   C    +++A +  
Sbjct: 168 DTVALNMVMHALAKQGGAKDAYSVFLEFK-DSITLDSHSFNILIHGYCEARMLDDARKTM 226

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EME+ G   D  +YT  I  +CK +       IL+ M ++G  P+ + Y   + A  K 
Sbjct: 227 EEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGKA 286

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            ++ E +E+  +M K  C PD   ++ +I +  + G L +A  V+ +ME   +S    ++
Sbjct: 287 RKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVSRDLWTY 346

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSA--PQYGTLKALLNSLLRAQKVEMAKDVWS 514
             M++      C         +++ R  +++  P   T + LL    + + +++ K + S
Sbjct: 347 NAMIY----HACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLS 402

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +      +++  + + I  L  +G ++ AC +  D +   ++P+  T+  L++ L
Sbjct: 403 HMFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILLKEL 458



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 6/239 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y   IK+  K + F  V  ++ EM ++  +P +I   +++   R    AR + +A+EV +
Sbjct: 241 YTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYI---RALGKARKINEALEVYE 297

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K  C+PD   F  L+  L ++  + +A  +F++M        L  + +++Y  C   
Sbjct: 298 KMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACANR 357

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A  +L +M+    +PD+  Y  LL    +M  M     LL  M       + ++Y 
Sbjct: 358 QGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLSHMFNNNVRIDLSTYA 417

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           +LI+ L    K+E A   F +   +G      TY  L+    ++  ++   +I   M+Q
Sbjct: 418 LLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILLKELGQNNMVEMKGKIEKLMLQ 476


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 211/429 (49%), Gaps = 5/429 (1%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L +EM  EK      + + IL+     AR    AI++ ++M K  C+ D F +G ++D+L
Sbjct: 99  LFDEM-TEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDSL 156

Query: 220 CKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           CK+    EA  +F EM      P +  ++SL+ G C+ G+L EA     +M+  G   D+
Sbjct: 157 CKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADV 216

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             YN+L+ G ++ G   +    L  M  +G  P+A ++T+LI  LC+  K+ EA +    
Sbjct: 217 YTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILEL 276

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M   G E D++TY TL++G C   +++   ++ +S+  RGI  N  +Y  ++  + K ++
Sbjct: 277 MHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQK 336

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           ++E   L  EMR  G  P    YN +I   C+ G ++ A  ++ EM+         ++ V
Sbjct: 337 IDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCV 396

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G    G L EA + F+ +  +     P       LL+ + RA K+E A   +  I  
Sbjct: 397 LLDGLCKNGHLEEAIDLFQSI--KKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK 454

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
            G E +  A+ I I+ L + G + EA      M +   +P   TF  +++ L K      
Sbjct: 455 NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHE 514

Query: 579 AAEITEKVR 587
           A ++ E++R
Sbjct: 515 AIQLLEEMR 523



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 205/422 (48%), Gaps = 9/422 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  LI  L K RK G    L E+M+   K  + T   + +++       M  +A+++  
Sbjct: 114 TYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFT---YGMIIDSLCKDGMTTEALDMFS 170

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  PD  V+  L+D LC+   +KEA + F EM  R     +  + SL++G  + G
Sbjct: 171 EMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG 230

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              E  + L  M D GF PD   +  L+ G  + GK+ +A ++L+ M  KG +P+  +Y 
Sbjct: 231 LWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYN 290

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC + ++E+A + F  +   G + +V +Y  LI+G+CK +KID  + + + M  +
Sbjct: 291 TLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPK 350

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++ A  +   +    +L  EM+  G    +S Y V++   CK G L+EA
Sbjct: 351 GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEA 410

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++++  ++     P  + F +++ G    G L EA + F E+   GL   P       L+
Sbjct: 411 IDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGL--EPDTIAYNILI 468

Query: 498 NSLL-RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           N L  +    E  K +W  +  KGC  +   + + I +L     + EA     +M + + 
Sbjct: 469 NGLCNKGMLSEAVKLLWQ-MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNF 527

Query: 557 MP 558
            P
Sbjct: 528 SP 529



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            +  LI  L K  K G    ++E M  + ++P ++T   +  LM        ++ A ++ 
Sbjct: 253 TFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILT---YNTLMNGLCLVGQLEDATKLF 309

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           + +   G + + F +  L++  CK+  + EA +LF+EMR +  KPS   + +L+   C+ 
Sbjct: 310 ESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQS 369

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++  A+ + V+M+  G    +  Y  LL G  + G + +A +L + +++    PN   +
Sbjct: 370 GRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVF 429

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           ++L+  +CR  K+EEA + F E+ ++G E D + Y  LI+G C    +    ++L  M +
Sbjct: 430 SILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE 489

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +G LP+ +T+  I+    K+ E+ E ++L+ EMR     PD +  ++++ LA
Sbjct: 490 KGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLA 541



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 134/298 (44%), Gaps = 3/298 (1%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GFEPD V    L+ G      + DA +L  EM  KG   +A +Y +LI  LC+  K   A
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            +   +M +  C+ DV TY  +I   CK        ++   MI  GILP+ + Y  +M  
Sbjct: 132 IKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG 190

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             +   L+E +E   EM   G   DV  YN +I    + G  KE     N M     SP 
Sbjct: 191 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 250

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             +F +++ G   +G + EA +  + M  +G    P   T   L+N L    ++E A  +
Sbjct: 251 AFTFTILIDGLCKEGKVGEAQQILELMHHKG--KEPDILTYNTLMNGLCLVGQLEDATKL 308

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +  +  +G +LNV+++ I I+    +  + EA     +M    + P   T+  L+  L
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGAL 366



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 123/264 (46%), Gaps = 3/264 (1%)

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           ++G +P+A + T L++ +     + +A + F EM   G   D  TY  LI+G CK+RK  
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              ++ + M +     +  TY  I+ +  K     E +++  EM   G +PDV  Y+ ++
Sbjct: 130 LAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+ G LKEA+  + EME   +S    ++  ++HG    G   E   +   MV RG  
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF- 247

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            +P   T   L++ L +  KV  A+ +   +  KG E ++  +   ++ L   G +++A 
Sbjct: 248 -SPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDAT 306

Query: 546 SYCLDMMDADVMPQPDTFAKLMRG 569
                + D  +     ++  L+ G
Sbjct: 307 KLFESLADRGIKLNVFSYNILING 330



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 101/255 (39%), Gaps = 38/255 (14%)

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
           + G E D VT TTL+ G      I    ++ D M ++G+  +  TY  ++    K  +  
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             ++L  +M+   C  DV  Y ++I   CK G   EA+++++EM  A + P    +  ++
Sbjct: 130 LAIKLHEKMKG-NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G    G L EA E+FKEM GR                                     G
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGR-------------------------------------G 211

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
              +VY +   IH L   G  KE   +   M+D    P   TF  L+ GL K      A 
Sbjct: 212 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQ 271

Query: 581 EITEKVRKMAAERQI 595
           +I E +     E  I
Sbjct: 272 QILELMHHKGKEPDI 286


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 183/350 (52%), Gaps = 4/350 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +LI   S+ R          +M+K    +    ++ +LM  +     + +A+++ DEM
Sbjct: 261 FSSLIAVFSRNRHLDQALVYFRDMKK-FGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM 319

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKL 259
            + GC  D   +  +L+ LCK   + +A KLFDEM ER   P    FT+L++G C++G +
Sbjct: 320 LEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNM 379

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +   M     +PDIV YN L+ G+ ++G+M  A EL   M  +   PN  +Y +L
Sbjct: 380 TKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGIL 439

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I A C +  + EA R +  M   G +  +VT  T+I G+C+S    +  E L  MI +G+
Sbjct: 440 INAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGV 499

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ ++Y  ++    +++ +++    + +M K G +PD+  YNVV+   C+ G ++EA  
Sbjct: 500 APDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAEL 559

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           V  +M    ++P   ++  +++G + Q  L EA  +  EM+ RG   AP 
Sbjct: 560 VLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGF--APD 607



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 204/430 (47%), Gaps = 8/430 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           ++ +L K  KF  V + + EM        ++T   +  L+  +    ++++A E+++ M 
Sbjct: 124 MVNALCKDGKFDDVKSFLSEMEGNGIYADMVT---YNTLIGAYCREGLLEEAFEIMNSMA 180

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260
             G +P  F +  +++ LCK      A  +  EM      P    + +LL   C+     
Sbjct: 181 DKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFS 240

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EAK +  +M   G  PD+V +++L++ +++   +  A    ++M++ G  P+   YTVL+
Sbjct: 241 EAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 300

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              CR   M EA +   EM   GC  DV+ Y T+++G CK + +    ++ D M++RG L
Sbjct: 301 HGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL 360

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  T+  ++  H +   + + + L G M +    PD+  YN +I   CK+GE+++A  +
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           W+ M +  + P   ++ ++++ +   G + EA   +  M+ +G+   P   T   ++   
Sbjct: 421 WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGI--KPTLVTCNTVIKGY 478

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            R+     A +    ++ KG   +  ++   I+      ++ +A  +   M    ++P  
Sbjct: 479 CRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDI 538

Query: 561 DTFAKLMRGL 570
            T+  +M G 
Sbjct: 539 ITYNVVMNGF 548



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 205/442 (46%), Gaps = 4/442 (0%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           +   Y+ S +   +L+  L K+      W +  E+ +   +L       I++        
Sbjct: 75  RSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIEL-NVYTLNIMVNALCKDGK 133

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
                  L EM   G   D   +  L+ A C+   ++EA ++ + M ++  KPSL  + +
Sbjct: 134 FDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNA 193

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK+G+   AK +L++M + G  PD   YN LL    +    ++A E+  EM R+G
Sbjct: 194 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG 253

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  S++ LI    R   +++A   F +M++ G   D V YT L+ G+C++  +    
Sbjct: 254 VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +I D M+++G + + + Y  I+    K++ L +  +L  EM + G +PD   +  +I   
Sbjct: 314 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 373

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+ G + +A++++  M   ++ P   ++  ++ GF   G + +A E +  M+ R +   P
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIF--P 431

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            + T   L+N+      V  A  +W  ++ KG +  +      I     +G   +A  + 
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 491

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
             M+   V P   ++  L+ G 
Sbjct: 492 GRMIAKGVAPDHISYNTLINGF 513



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 175/362 (48%), Gaps = 8/362 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    +   F     +  EM ++   P L++   F  L+  F+  R + +A+    
Sbjct: 226 YNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVS---FSSLIAVFSRNRHLDQALVYFR 282

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M K+G  PD  ++  L+   C+N ++ EA K+ DEM E+     +  + ++L G CKE 
Sbjct: 283 DMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEK 342

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A  +  +M + G  PD   +  L+ G+ Q G MT A  L   M ++   P+  +Y 
Sbjct: 343 MLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYN 402

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C++ +ME+A+  +  M       + +TY  LI+ +C    +   + + D MI++
Sbjct: 403 TLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEK 462

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P  +T   ++  + +  +  +  E +G M   G  PD  +YN +I    +   + +A
Sbjct: 463 GIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKA 522

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
               N+ME   L P   ++ V+++GF  QG + EA    ++M+ +G+   P   T  AL+
Sbjct: 523 FLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGI--NPDRSTYTALI 580

Query: 498 NS 499
           N 
Sbjct: 581 NG 582



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 191/405 (47%), Gaps = 7/405 (1%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++RR   +R+  + +E L       C  +  VF  L+    +   ++E  + F  +R + 
Sbjct: 21  MIRRSGVSRV--EVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKG 78

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           +  S+    SLL G  K   +  A  V  ++  +G E ++   N +++   + GK  D  
Sbjct: 79  YLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVK 138

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
             L EM   G   +  +Y  LI A CR   +EEA      M   G +  + TY  +I+G 
Sbjct: 139 SFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGL 198

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK  +  R   IL  M+  G+ P+  TY  +++   +++   E  E+ GEM + G VPD+
Sbjct: 199 CKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDL 258

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
            +++ +I +  +   L +A+  + +M+   L P    + V++HG+   G ++EA +   E
Sbjct: 259 VSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDE 318

Query: 479 MVGRG-LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           M+ +G +L    Y T   +LN L + + +  A  ++  +V +G   + Y +T  IH    
Sbjct: 319 MLEQGCVLDVIAYNT---ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQ 375

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           +G++ +A S    M   ++ P    +  L+ G  K+   + A+E+
Sbjct: 376 DGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 5/237 (2%)

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
             M K  +++  M + R  KP ++    +  L+  F     ++KA E+ D M      P+
Sbjct: 377 GNMTKALSLFGTMTQ-RNIKPDIVA---YNTLIDGFCKVGEMEKASELWDGMISRKIFPN 432

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
              +G L++A C    V EA +L+D M E+  KP+L    +++ G+C+ G   +A   L 
Sbjct: 433 HITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLG 492

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M   G  PD + YN L++G+ +   M  AF  + +M ++G  P+  +Y V++   CR  
Sbjct: 493 RMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQG 552

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           +M+EA     +M   G   D  TYT LI+G      ++  +   D M+QRG  P+ +
Sbjct: 553 RMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 209/439 (47%), Gaps = 14/439 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           Y +LI  L K  K    + L++EMR    P  +     VI  R    A     A+     
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI--RGLCKAGRFGDALGYFKT 90

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLLYGWCKEG 257
           +    C PD   F  L+DAL K+  V+EA ++F+ M    +  P++  +T+++ G CK+G
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL  A  +L  M + G  P+++ Y+ L+ G  + G+    F LL+EM R+G  P+   Y 
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYN 210

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC+  +++EA      M RSGC   VVTY +L+  FC+S+++DR + ++  M +R
Sbjct: 211 TLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER 270

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK------L 431
           G  P+ + Y  ++    +   L++   L+ +M    CVPDV  Y+ +I   CK       
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            +L+ A  +   M+     P   ++ V++ G        +A    + M+   ++  P   
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVV--PDLS 388

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           +   ++ SL ++  ++ A  ++  +  + C+ N  A+   I  L   G V +A     ++
Sbjct: 389 SFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV-FEL 447

Query: 552 MDADVMPQPDTFAKLMRGL 570
           M     P   T+  ++ GL
Sbjct: 448 MVESFRPGVATYNSVLDGL 466



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 196/426 (46%), Gaps = 51/426 (11%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA- 262
           C P+EF +G L+  LCK   + +A +L DEMR+R   P +     ++ G CK G+  +A 
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDAL 85

Query: 263 ------------------KYVLVQMKDAG--------FE---------PDIVVYNNLLSG 287
                               ++  +  +G        FE         P++V Y  +++G
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVING 145

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             + GK+  A ELL  M   GC PN  +Y+VL++ LC+  + ++      EM R G + D
Sbjct: 146 LCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V+ Y TL++G CKSR++D   E++  MI+ G  P  +TY  +M    + ++++    L+ 
Sbjct: 206 VIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQ 265

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL--- 464
            M + GC PDV NYN VI   C+   L +A  +  +M AA   P   ++  ++ G     
Sbjct: 266 VMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDW 325

Query: 465 ---GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                  L  ACE  + M   G    P  GT   ++  L RA+K + A  +   ++    
Sbjct: 326 RVDADWKLEAACEILEMMKQTG--CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV 383

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             ++ ++++ I SL  +  +  A      M + +  P P  +A L+ GL K        E
Sbjct: 384 VPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK------GGE 437

Query: 582 ITEKVR 587
           + + VR
Sbjct: 438 VDKAVR 443



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 221/465 (47%), Gaps = 36/465 (7%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVV---LRPGLTERVINRCGDAGNLGYRYYMW 127
           S  VE+ F+I +  H+    L   + ++ V+    + G  +R I         G      
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGC----- 167

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFA 185
               PN +     Y  L++ L K  +    + L++EM  R  +P +I   ++  L+    
Sbjct: 168 ---CPNVI----TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI---MYNTLLNGLC 217

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
            +R + +A+E++  M + GC P    +  L++  C++  V  A +L   M ER   P + 
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVI 277

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG------KMTDAF 298
           ++ +++ G C++ +L +A+ +L QM  A   PD++ Y+ ++ G  +        K+  A 
Sbjct: 278 NYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+L+ M++ GC PNA +Y V+I+ LCR  K ++A      M  S    D+ +++ +I   
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV---ELMGEMRKIGCV 415
           CKS  +D  Y+I   M +R   PN + Y  ++    K  E+++ V   ELM E  +    
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFR---- 453

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P V+ YN V+   C +G ++EAV +   M      P   S+  ++ G     C+ EA E 
Sbjct: 454 PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYEL 513

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           F+ +  +G   A + G    L+N L + +++  A  V + ++  G
Sbjct: 514 FQAVEAKGF--AMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 193/423 (45%), Gaps = 50/423 (11%)

Query: 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           C L+ L +     +A +LF E  ER  P+   + SL++G CK GKL +A  +L +M+D G
Sbjct: 3   CALNLLVRAGQHGQAVQLFRE--ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG 60

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P + V+N ++ G  + G+  DA    K +    C P+  ++ +L+ AL +  ++EEA 
Sbjct: 61  IPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 334 RAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM-- 390
           + F  M  S  C  +VVTYTT+I+G CK  K+DR  E+LD M + G  PN +TY  ++  
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 391 ------------LAHE---------------------KKEELEECVELMGEMRKIGCVPD 417
                       L  E                     K   L+E +EL+  M + GC P 
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN ++ L C+  ++  A  +   M      P   ++  ++ G      L +A    K
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKV------EMAKDVWSCIVTKGCELNVYAWTIW 531
           +MV       P   T   +++ L +  +V      E A ++   +   GC  N   + + 
Sbjct: 301 QMVAA--RCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L      ++A +    M+D++V+P   +F+ ++  L K ++   A     K+  M +
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY----KIFGMMS 414

Query: 592 ERQ 594
           ER+
Sbjct: 415 ERE 417


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 197/383 (51%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A +E +R+   +L+  +V  +  ++      + V  A ++  
Sbjct: 301 YGTLINGLCKV---GETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYS 357

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           E       PD F +  L+   C    +K+A  LF++M  +   P +  F+ L+ G+CK+G
Sbjct: 358 EKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDG 417

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EAK VL  M     +PD+V Y++L+ GY  + ++  A  +   M  +G   N  SY 
Sbjct: 418 NIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYN 477

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++ ++EA + F EM       DV+TY++LI G CKS +I    E++D M  R
Sbjct: 478 IMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYR 537

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ +TY  I+ A  KK  +++ + L+ +++  G  PD++ Y ++++  C+ G+L++A
Sbjct: 538 GQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDA 597

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+ ++     +    ++ VM+ GF  +G   EA     +M   G +  P   T + ++
Sbjct: 598 RKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCI--PDAKTYEIII 655

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            SL    + +MA+ +   ++ +G
Sbjct: 656 LSLFEKDENDMAEKLLREMIMRG 678



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 210/450 (46%), Gaps = 13/450 (2%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-------PQLITTEVFVILM 181
           S+  N +HS+ +     K+  K +     + +  E    K       P  IT   F+   
Sbjct: 214 SRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFI--- 270

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-K 240
           + F     + +A+   D++   G   D+  +G L++ LCK    K A +L      +  +
Sbjct: 271 KGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQ 330

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P +  + +++ G CK+  + +A  +  +       PD+  YN L+SG+  +GK+ DA +L
Sbjct: 331 PDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDL 390

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             +M  K   P+  ++++L+   C+   ++EA      M +   + DVVTY++L+ G+C 
Sbjct: 391 FNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCL 450

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++++   I ++M  RG+  N  +Y  ++    K + ++E ++L  EM      PDV  
Sbjct: 451 VNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVIT 510

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y+ +I   CK G +  A+ + +EM      P   ++  ++     +  + +A     ++ 
Sbjct: 511 YSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLK 570

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           G+G+   P   T   L+  L ++ K+E A+ V+  ++ KG  L+VYA+T+ I      G 
Sbjct: 571 GQGI--RPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGL 628

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             EA +    M +   +P   T+  ++  L
Sbjct: 629 FDEALALLSKMEENGCIPDAKTYEIIILSL 658



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 1/203 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I++  F   +MV +A+++  EM      PD   +  L+D LCK+  +  A +L DEM  R
Sbjct: 478 IMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYR 537

Query: 239 FK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            + P +  + S+L   CK+  + +A  +L ++K  G  PD+  Y  L+ G  Q GK+ DA
Sbjct: 538 GQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDA 597

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++ +++  KG + +  +YTV+IQ  C     +EA     +ME +GC  D  TY  +I  
Sbjct: 598 RKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILS 657

Query: 358 FCKSRKIDRCYEILDSMIQRGIL 380
             +  + D   ++L  MI RG+L
Sbjct: 658 LFEKDENDMAEKLLREMIMRGLL 680



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 80/189 (42%), Gaps = 2/189 (1%)

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           ++ K G  PD       I+  C  G++ +A++  +++ A        S+  +++G    G
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
               A E  +   G+  L  P       +++ + + + V  A D++S  V+K    +V+ 
Sbjct: 313 ETKAALELLRRNDGK--LVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFT 370

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +   I      G +K+A      M   +++P   TF+ L+ G  K  N + A  +   + 
Sbjct: 371 YNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMM 430

Query: 588 KMAAERQIT 596
           K + +  + 
Sbjct: 431 KQSIKPDVV 439


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 233/470 (49%), Gaps = 18/470 (3%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           LG+R ++W+ K   ++    V   +I  L K   F   W +++E++    + I++E F +
Sbjct: 76  LGFRLFIWSLKS-WHLRCRTVQDLIIGKLIKENAFELYWKVLQELKNSAIK-ISSEAFSV 133

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-R 238
           L+  ++ A M +KA+E    M  + C+PD F F  +L  L +  +   A  ++++M +  
Sbjct: 134 LIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCN 193

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +  +  L++G CK  K  +A  +  +M D G  P+ ++Y+ +LSG  Q  K+ DA 
Sbjct: 194 LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ 253

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +MR  GC+ +  +Y VL+   C+   +++A      + + G    V+ Y  LI+G 
Sbjct: 254 RLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGL 313

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            ++R+ +  +     M++  I P+ + Y  ++    ++  + E + L+GEM + G  PD 
Sbjct: 314 FRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDT 373

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I+  C +G L EA ++  E+      P   ++ +++ G    G + +A   FKE
Sbjct: 374 ICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKE 433

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI-----------VTKGCE--LNV 525
           M   G L  P   T  +L+N L +A ++E A+ ++  +           +++G +   ++
Sbjct: 434 MEKLGCL--PSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDI 491

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
            +  + +  L  +G + +A    + ++D+ V+P   T+  L+ G  K  N
Sbjct: 492 ASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGN 541



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 184/408 (45%), Gaps = 34/408 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALIK    M       +L  E+ K          + IL+       ++ KA  +  EM
Sbjct: 376 YNALIKGFCDMGYLDEAESLRLEISKHD-CFPNNHTYSILICGMCKNGLINKAQHIFKEM 434

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG-------- 252
            K GC P    F  L++ LCK + ++EA  LF +M    KPSL  F  L  G        
Sbjct: 435 EKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSL--FLRLSQGTDKVFDIA 492

Query: 253 --------WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
                    C+ G +++A  +L+Q+ D+G  PDI  YN L++G+ + G +  AF+L KEM
Sbjct: 493 SLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEM 552

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           + KG  P++ +Y  LI  L R  + E+A   F +M + GC  +  TY T+++  C+   I
Sbjct: 553 QLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNI 612

Query: 365 DRCYEILDSMIQ--RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
                +    ++  RG    +   + ++      EEL+  +  + EM       D++ Y 
Sbjct: 613 SLALSVWMKYLRDFRGWEDEK---VRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYT 669

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKE 478
           + +    +     EA  +++ ++   ++  + S V+++    G+ C++E    A + F  
Sbjct: 670 IFLIGLVQAKRDCEAFAIFSVLKDFKMNISSASCVMLI----GRLCMVENLDMAMDVFLF 725

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
            + RG    P       LL +LL   + + A  + + +   G EL ++
Sbjct: 726 TLERGFRLMPP--ICNQLLCNLLHLDRKDDALFLANRMEASGTELCIF 771


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 233/470 (49%), Gaps = 18/470 (3%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           LG+R ++W+ K   ++    V   +I  L K   F   W +++E++    + I++E F +
Sbjct: 76  LGFRLFIWSLKSW-HLRCRTVQDLIIGKLIKENAFELYWKVLQELKNSAIK-ISSEAFSV 133

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-R 238
           L+  ++ A M +KA+E    M  + C+PD F F  +L  L +  +   A  ++++M +  
Sbjct: 134 LIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCN 193

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +  +  L++G CK  K  +A  +  +M D G  P+ ++Y+ +LSG  Q  K+ DA 
Sbjct: 194 LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ 253

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +MR  GC+ +  +Y VL+   C+   +++A      + + G    V+ Y  LI+G 
Sbjct: 254 RLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGL 313

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            ++R+ +  +     M++  I P+ + Y  ++    ++  + E + L+GEM + G  PD 
Sbjct: 314 FRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDT 373

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I+  C +G L EA ++  E+      P   ++ +++ G    G + +A   FKE
Sbjct: 374 ICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKE 433

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI-----------VTKGCE--LNV 525
           M   G L  P   T  +L+N L +A ++E A+ ++  +           +++G +   ++
Sbjct: 434 MEKLGCL--PSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDI 491

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
            +  + +  L  +G + +A    + ++D+ V+P   T+  L+ G  K  N
Sbjct: 492 ASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGN 541



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 19/240 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALIK    M       +L  E+ K          + IL+       ++ KA  +  EM
Sbjct: 376 YNALIKGFCDMGYLDEAESLRLEISKHDC-FPNNHTYSILICGMCKNGLINKAQHIFKEM 434

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG-------- 252
            K GC P    F  L++ LCK + ++EA  LF +M    KPSL  F  L  G        
Sbjct: 435 EKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSL--FLRLSQGTDKVFDIA 492

Query: 253 --------WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
                    C+ G +++A  +L+Q+ D+G  PDI  YN L++G+ + G +  AF+L KEM
Sbjct: 493 SLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEM 552

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           + KG  P++ +Y  LI  L R  + E+A   F +M + GC  +  TY T+++  C+   I
Sbjct: 553 QLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNI 612


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 220/457 (48%), Gaps = 4/457 (0%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            ++   + +  LI      R+    +A++ EM ++     + +   +++     +  V  
Sbjct: 89  TFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLA 148

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A++  +     GC  D   +  ++D L KN  +++A  L +++      P++  + +LL 
Sbjct: 149 AMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLN 208

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G+L EA  +L ++ D G  PD+V Y +L+ G  +  +  +A++L KEM  +G   
Sbjct: 209 GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVL 268

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +   YT LI+ L +  K+ +A+  +  M   GC  DVVT +T+I G CK+ +I     I 
Sbjct: 269 DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF 328

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
            SM  RG+ PN++ Y  ++    K  +++  +E++ +M+K  C PD   YN++I   CK 
Sbjct: 329 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 388

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G+++ A   ++EM  A   P   ++ ++V GF   G    AC  F +M       +P   
Sbjct: 389 GDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSH--CSPNVV 446

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   L++ L + +++  A   +  +  +GC  + + ++  +  L  +G ++  C    D 
Sbjct: 447 TYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCML-FDE 505

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           M+   +    T  +L+  L K      A  +   +RK
Sbjct: 506 MERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRK 542



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           +I  L K  + GA   + + M  R   P  +   V+  L+     AR +  A+E+L +M 
Sbjct: 311 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEV---VYSALIHGLCKARKMDCALEMLAQMK 367

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
           K  C PD   +  L+D LCK+  V+ A   FDEM E   KP +  +  L+ G+CK G   
Sbjct: 368 KAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTD 427

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A  V   M  +   P++V Y  L+SG  +  ++T A    + M+ +GC P++  Y+ L+
Sbjct: 428 AACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLV 487

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             LC+  K+E     F EMERSG  A+  T T LI   CK+ ++D    + +++ + G +
Sbjct: 488 DGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG-M 545

Query: 381 PNQLTYLHIMLAHEKKEELEEC 402
           P+   Y  I+    K  ++  C
Sbjct: 546 PHPYAYNSIISTLIKSAKVNPC 567



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 173/408 (42%), Gaps = 42/408 (10%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           +F CL DA        E  +     R  F+ S+    +LL  + +  +  EA  +L    
Sbjct: 31  IFQCLKDA----DLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNEL 86

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEKM 329
              F PD+  +N L++GY    +  +AF +++EM    G  P+  ++ +++  LC+  K+
Sbjct: 87  ATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKV 146

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
             A   F     +GC  D+ TYT ++    K++KI     +++ +   G  P   TY  +
Sbjct: 147 LAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNAL 206

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSN----------------------------- 420
           +    K   LEE ++L+ ++   GC PDV                               
Sbjct: 207 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL 266

Query: 421 ------YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
                 Y  +IR   + G++ +A +V+  M +    P   +   M+ G    G +  A  
Sbjct: 267 VLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVR 326

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            FK M  RGL  AP      AL++ L +A+K++ A ++ + +    C  +   + I I  
Sbjct: 327 IFKSMEARGL--APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 384

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           L  +G V+ A ++  +M++A   P   T+  L+ G  K  N   A  +
Sbjct: 385 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGV 432



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 147/317 (46%), Gaps = 3/317 (0%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GF+  +   N LL  +A+  +  +A  LLK        P+  ++ VLI   C   + EEA
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEA 113

Query: 333 NRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
                EME   G    + T+  ++ G CKS K+    +  ++    G   +  TY  I+ 
Sbjct: 114 FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVD 173

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              K +++++ V LM ++   GC P ++ YN ++   CK+G L+EA+++  ++     +P
Sbjct: 174 WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 233

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  ++ G   +    EA + FKEM  RGL+      T  AL+  LL+A K+  A  
Sbjct: 234 DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYT--ALIRGLLQAGKIPQASS 291

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           V+  + ++GC  +V   +  I  L   G +  A      M    + P    ++ L+ GL 
Sbjct: 292 VYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC 351

Query: 572 KLYNRQIAAEITEKVRK 588
           K      A E+  +++K
Sbjct: 352 KARKMDCALEMLAQMKK 368


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 215/443 (48%), Gaps = 8/443 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y ++I +L K +       ++  M K    +     +  ++  + S+   K
Sbjct: 232 PNVV----TYNSIIAALCKAQAMDKAMEVLTSMVKNGV-MPNCRTYNSIVHGYCSSGQPK 286

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +AI  L +M   G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+  +G LVE   +L  M   G  P+  V++ L+  YA+ GK+  A  +  +MR++G +
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y  +I  LC+  ++E+A R F +M         + Y +LI   C   K D+  E+
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M+ RGI  + + +  I+ +H K+  + E  +L   M +IG  P++  Y+ +I   C 
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCL 526

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++ EA  +   M +  + P   ++  +++G+     + +A   F+EM   G+  +P  
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDI 584

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   +L  L + ++   AK+++  I   G +L +  + I +H L  N    EA     +
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 551 MMDADVMPQPDTFAKLMRGLKKL 573
           +   D+  +  TF  ++  L K+
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKV 667



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 196/404 (48%), Gaps = 13/404 (3%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + IL++        ++A+E+L  MP  G  C PD   +  +++   K   + +A   + E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R   P++  + S++   CK   + +A  VL  M   G  P+   YN+++ GY   G+
Sbjct: 225 MLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A   LK+M   G +P+  +Y  L+  LC+  +  EA + F  M + G + ++ TY T
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+     +   + +LD M++ GI PN   +  ++ A+ K+ ++++ + +  +MR+ G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-- 471
             PD   Y  VI + CK G +++A+  + +M    LSPG   +  ++H      C+ +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL----CIFDKW 460

Query: 472 --ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A E   EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + N+  ++
Sbjct: 461 DKAKELILEMLDRGICLDTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYS 518

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             I      G + EA      M+   + P   T+  L+ G  K+
Sbjct: 519 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 44/332 (13%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF IL+  +A    V +A+ V  +M + G  PD   +G ++  LCK+  V++A + F++M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 236 -RERFKP------SLRH-----------------------------FTSLLYGWCKEGKL 259
             ER  P      SL H                             F S++   CKEG++
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +E++ +   M   G +P+I+ Y+ L+ GY   GKM +A +LL  M   G  P+  +Y  L
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C++ +ME+A   F EME SG   D++TY  ++ G  ++R+     E+   + + G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----NYNVVIRLACKLGELK 435
                TY  I+    K    +E + +   +    C+ D+      +N++I    K+G   
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKVGRND 671

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EA +++  + A  L P   ++ +M    + QG
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 141/286 (49%), Gaps = 1/286 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA E++ EM   G   D   F  ++D+ CK   V E+ KLFD M R   KP++  +++L+
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLI 521

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  GK+ EA  +L  M   G +PD V YN L++GY ++ +M DA  L +EM   G  
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y +++Q L +  +   A   +V +  SG + ++ TY  ++ G CK+   D    +
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             ++    +     T+  ++ A  K    +E  +L   +   G VPDV  Y+++     +
Sbjct: 642 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 701

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            G L+E  +++  ME    +  +     +V   L +G +  A  Y 
Sbjct: 702 QGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 42/331 (12%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC----------- 324
           P++  Y  L+      G++   F  L  + +KG   +A ++T L++ LC           
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 325 ---RMEKM----------------------EEANRAFVEMERSG--CEADVVTYTTLISG 357
              RM ++                      +EA      M   G  C  DVV+YTT+I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           F K   +D+ Y     M+ RGILPN +TY  I+ A  K + +++ +E++  M K G +P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              YN ++   C  G+ KEA+    +M +  + P   ++  ++      G   EA + F 
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 478 EMVGRGLLSAPQYGTLKALLNSL-LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M  RGL   P+  T   LL     +   VEM   +   +V  G   N Y ++I I +  
Sbjct: 329 SMTKRGL--KPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             G V +A      M    + P   T+  ++
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVI 416



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 121/274 (44%), Gaps = 41/274 (14%)

Query: 304 MRRKGCD---PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           M R G D   PN  +Y +LI + C   +++    A   + + G   D + +T L+ G C 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
            +   R  + +D +++R                               M ++GC+P+V +
Sbjct: 139 DK---RTSDAMDIVLRR-------------------------------MTQLGCIPNVFS 164

Query: 421 YNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
           YN++++  C     +EA+ +   M  +     P   S+  +++GF  +G L +A   + E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ RG+L  P   T  +++ +L +AQ ++ A +V + +V  G   N   +   +H   S+
Sbjct: 225 MLDRGIL--PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G  KEA  +   M    V P   T+  LM  L K
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 231/471 (49%), Gaps = 22/471 (4%)

Query: 79  RILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSY 138
           R+L+  H+R           G  L  G    V+N   D G++    ++     P++    
Sbjct: 178 RVLEDLHAR-----------GCALDVGNCNLVLNAICDQGSVDEALHLL-RDLPSFGCEP 225

Query: 139 DV--YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           DV  Y A++K L   +++G V  LMEEM R   P  I T  F  L+       + ++  E
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVT--FNTLISYLCRNGLFERVHE 283

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWC 254
           VL +M ++GC PD  ++  ++D +CK   ++ A ++ + M     KP++  + +LL G C
Sbjct: 284 VLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLC 343

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              +  E + +L +M D     D V +N L+  + Q G +    ELL++M  +GC P+  
Sbjct: 344 SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVI 403

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT +I   C+   ++EA      M   GC+ + ++YT ++ G C + +     +++  M
Sbjct: 404 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 463

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           IQ+G   N +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G+ 
Sbjct: 464 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 523

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTL 493
            EA+ + N M    +SP T  +  +      +G + +  + F  +    + S A  Y   
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLY--- 580

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            A+++SL +  + E A +  + +V+ GC  N   +TI I  L S G VKEA
Sbjct: 581 NAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEA 631



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 186/394 (47%), Gaps = 3/394 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++R   +   +  A+ VLDEMP+ GC P   ++  +L+A C+    + A ++ +++  R 
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
               + +   +L   C +G + EA ++L  +   G EPD+V YN +L G     +     
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL++EM R  C PN  ++  LI  LCR    E  +    +M   GC  D+  Y T+I G 
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   ++  +EIL+ M   G+ PN + Y  ++      E  EE  EL+ EM    C  D 
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +N+++   C+ G +   + +  +M      P   ++  +++GF  +G + EA    K 
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M   G    P   +   +L  L  A++   A+D+ S ++ +GC LN   +   I+ L   
Sbjct: 428 MTACG--CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKK 485

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G V++A      M+     P   +++ ++ GL K
Sbjct: 486 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 154/316 (48%), Gaps = 8/316 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  L+K L    ++     L+ EM  K+ P  +    F IL+  F    +
Sbjct: 329 KPNVV----CYNTLLKGLCSAERWEETEELLAEMFDKDCP--LDDVTFNILVDFFCQNGL 382

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V + IE+L++M + GC PD   +  +++  CK   + EA  L   M     KP+   +T 
Sbjct: 383 VDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 442

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +L G C   + V+A+ ++ QM   G   + + +N L++   + G +  A ELLK+M   G
Sbjct: 443 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 502

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  SY+ +I  L +  K +EA      M   G   + + Y+++ S   +  +I++  
Sbjct: 503 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 562

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ D++    I  + + Y  ++ +  K+ E E  +E +  M   GCVP+ S Y ++IR  
Sbjct: 563 QMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 622

Query: 429 CKLGELKEAVNVWNEM 444
              G +KEA  +  E+
Sbjct: 623 ASEGFVKEAQEMLTEL 638



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 171/390 (43%), Gaps = 9/390 (2%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++   C+   ++ A +L   +     P+   +  ++   C  G++ +A  VL +M  
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  P   +Y+ +L    + G    A  +L+++  +GC  +  +  +++ A+C    ++E
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 210

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A     ++   GCE DVV+Y  ++ G C +++     E+++ M++    PN +T+  ++ 
Sbjct: 211 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLIS 270

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              +    E   E++ +M + GC PD+  Y  +I   CK G L+ A  + N M +  L P
Sbjct: 271 YLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKP 330

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAK 510
               +  ++ G        E  E   EM  +     P    T   L++   +   V+   
Sbjct: 331 NVVCYNTLLKGLCSAERWEETEELLAEMFDK---DCPLDDVTFNILVDFFCQNGLVDRVI 387

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++   ++ +GC  +V  +T  I+     G + EA      M      P   ++  +++GL
Sbjct: 388 ELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447

Query: 571 KKLYNRQIAAE--ITEKVRKMAAERQITFK 598
                R + AE  +++ +++      ITF 
Sbjct: 448 CS-AERWVDAEDLMSQMIQQGCPLNPITFN 476


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 200/423 (47%), Gaps = 7/423 (1%)

Query: 93  LALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR 152
           L +   G+     + + ++++ GD        + WA    NY H+      +I  L KMR
Sbjct: 72  LGIGCPGIQPTSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMR 131

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212
           +   +W L+ +M      L+T E     +RR A AR  K A+ + D++   G E +    
Sbjct: 132 QIDQMWDLLSDMHCRG--LVTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETM 189

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
             LLDALCK   V+ A K+F  +    +P    F   ++GWC   ++ EA + + +MK  
Sbjct: 190 NVLLDALCKEKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQ 249

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GF P ++ Y  +L  Y +       +E+L  M  +GC PN  +YT+++ +L +    EEA
Sbjct: 250 GFPPSVITYTTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEA 309

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                 M+ SGC+ D + Y +LI+   K+  +    ++    +    +P  L   + M++
Sbjct: 310 LSVSHRMKSSGCKPDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMIS 369

Query: 393 HEKKEEL-EECVELMGEMRKIGCVPDVSNYNVVIRL-ACKLGELKEAVNVWNE-MEAASL 449
               ++L E+ + ++ EM    C PD+  Y  ++RL   + G+     N+ NE M   SL
Sbjct: 370 VFCYKDLDEDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSL 429

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
               D++ +++HG    G    A   F EMVG  ++  P+Y T + LL+   R +  E  
Sbjct: 430 GLDLDTYTLLIHGLCRVGETDWAYRLFDEMVGSEIV--PRYRTCELLLSEAQRKKMEEWV 487

Query: 510 KDV 512
           + +
Sbjct: 488 ERI 490



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 45/259 (17%)

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +M ++   ++LL +M  +G      +    I+ L    + ++A   F ++   G E + 
Sbjct: 128 GKMRQIDQMWDLLSDMHCRGL-VTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNT 186

Query: 349 VTYTTLISGFCKSRKID---RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            T   L+   CK +K++   + + +L   IQ                             
Sbjct: 187 ETMNVLLDALCKEKKVEVARKVFLVLSPHIQ----------------------------- 217

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
                     PD   +N+ +   C    + EA+    EM+A    P   ++  ++  +  
Sbjct: 218 ----------PDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGFPPSVITYTTVLEAYCK 267

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           Q       E    M   G    P   T   ++ SL +    E A  V   + + GC+ + 
Sbjct: 268 QHNFRMVYEILDSMSSEG--CHPNVITYTMIMTSLAKCHMFEEALSVSHRMKSSGCKPDT 325

Query: 526 YAWTIWIHSLFSNGHVKEA 544
             +   I+ L   GH+ EA
Sbjct: 326 LFYNSLINLLGKAGHLSEA 344


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 201/401 (50%), Gaps = 6/401 (1%)

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            LIT  V +  + +F     ++KA E+L  M   GC+P+   F  L++  C+  ++  A 
Sbjct: 79  NLITYNVLIHGLCKFGK---MEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRAL 135

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +L DEM +R   PS   + +++ G C    L  A  +L +M  +G +P++VVY+ L+ GY
Sbjct: 136 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGY 195

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
           A  G++ +A  LL  M   G  P+   Y  +I  L +  KMEEA+   +E++  G + D 
Sbjct: 196 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 255

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           VT+   I G+ K+ K+    +  D M+  G++PN   Y  ++  H K   L E + +   
Sbjct: 256 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRH 315

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           +  +G +PDV   +  I    K G ++EA+ V++E++   L P   ++  ++ GF  QG 
Sbjct: 316 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 375

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           + +A E   EM  +G+  AP      AL++ L ++  ++ A+ ++  +  KG E +   +
Sbjct: 376 VEKAFELHDEMCLKGI--APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTY 433

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  I     + +V EA S   +M    V P    +  L+ G
Sbjct: 434 STMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 474



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 188/388 (48%), Gaps = 3/388 (0%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G  P+ + +  +   LC+   + EA   F+EM++   KP     ++L+ G+ +EG 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + E   +   M   G   +++ YN L+ G  + GKM  A E+LK M   GC PN+ ++ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI+  CR   M  A     EME+       V+Y  +I+G C  + +    ++L+ M   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN + Y  +++ +  +  +EE   L+  M   G  PD+  YN +I    K G+++EA 
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
               E++   L P   +F   + G+   G + EA +YF EM+  GL+  P       L+N
Sbjct: 241 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM--PNNPLYTVLIN 298

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +A  +  A  ++  +   G   +V   + +IH L  NG V+EA     ++ +  ++P
Sbjct: 299 GHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVP 358

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              T++ L+ G  K    + A E+ +++
Sbjct: 359 DVFTYSSLISGFCKQGEVEKAFELHDEM 386



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 207/415 (49%), Gaps = 9/415 (2%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           N V S   Y A+I  L   +       L+E+M     KP ++   V+  L+  +AS   +
Sbjct: 145 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV---VYSTLIMGYASEGRI 201

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++A  +LD M   G  PD F +  ++  L K   ++EA+    E++ R  KP    F + 
Sbjct: 202 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 261

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+ K GK+ EA     +M D G  P+  +Y  L++G+ + G + +A  + + +   G 
Sbjct: 262 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 321

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  + +  I  L +  +++EA + F E++  G   DV TY++LISGFCK  ++++ +E
Sbjct: 322 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 381

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M  +GI PN   Y  ++    K  +++   +L   M + G  PD   Y+ +I   C
Sbjct: 382 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 441

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K   + EA ++++EM +  + P +  +  +VHG   +G + +A   F+EM+ +G  +   
Sbjct: 442 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS 501

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + T   L++   ++ K++ A  ++  ++ K    +   +T  I      G ++EA
Sbjct: 502 FNT---LIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEA 553



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 192/407 (47%), Gaps = 3/407 (0%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           EK  +  T  + I+      A+ + +A    +EM K G +PD      L+D   +   + 
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 62

Query: 227 EAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           E  ++ D M     P +L  +  L++G CK GK+ +A  +L  M   G +P+   +  L+
Sbjct: 63  EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 122

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            GY +   M  A ELL EM ++   P+A SY  +I  LC  + +  AN+   +M  SG +
Sbjct: 123 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 182

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            +VV Y+TLI G+    +I+    +LD M   G+ P+   Y  I+    K  ++EE    
Sbjct: 183 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 242

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + E++  G  PD   +   I    K G++ EA   ++EM    L P    + V+++G   
Sbjct: 243 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 302

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G L+EA   F+ +   G+L  P   T  A ++ LL+  +V+ A  V+S +  KG   +V
Sbjct: 303 AGNLMEALSIFRHLHALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 360

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + ++  I      G V++A     +M    + P    +  L+ GL K
Sbjct: 361 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 407



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 34/447 (7%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY------RALIKSL 148
           L H G++    L   +IN    AGNL     M A     ++H+  V        A I  L
Sbjct: 282 LDH-GLMPNNPLYTVLINGHFKAGNL-----MEALSIFRHLHALGVLPDVQTCSAFIHGL 335

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
            K  +      +  E+ KEK  +     +  L+  F     V+KA E+ DEM   G  P+
Sbjct: 336 LKNGRVQEALKVFSEL-KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPN 394

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
            F++  L+D LCK+  ++ A KLFD M E+  +P    +++++ G+CK   + EA  +  
Sbjct: 395 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 454

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M   G +P   VYN L+ G  + G M  A  L +EM +KG      S+  LI   C+  
Sbjct: 455 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSC 513

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK-----------------IDRCYEI 370
           K++EA++ F EM       D VTYTT+I   CK+ K                 +D  + +
Sbjct: 514 KIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFAL 573

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + M+ +G+ P+++TY  ++ AH K++ L E  +L  E+   G +   + ++++I   CK
Sbjct: 574 FEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCK 633

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             +L EA  + +EM    L P   +   +V  F   G + EA   F+ +   GL+  P  
Sbjct: 634 REDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLV--PDT 691

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIV 517
            TL  L+N  L     E A+++   +V
Sbjct: 692 TTLIDLVNGNLNDTDSEDARNLIKQLV 718



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M    L P T ++ ++  G      + EA   F+EM   GL   P Y    AL++  +R 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL--KPDYNACSALIDGFMRE 58

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
             ++    +   +V+ G  +N+  + + IH L   G +++A      M+     P   TF
Sbjct: 59  GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 118

Query: 564 AKLMRGLKKLYNRQIAAEITEKVRK 588
             L+ G  + +N   A E+ +++ K
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEK 143


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 244/495 (49%), Gaps = 14/495 (2%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           N V S   Y A+I  L   +       L+E+M     KP ++   V+ IL+  +AS   +
Sbjct: 433 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV---VYSILIMAYASEGRI 489

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++A  +LD M   G  PD F +  ++  L K   ++EA+    E++ R  KP    F + 
Sbjct: 490 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 549

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+ K GK+ EA     +M D G  P+  +Y  L++G+ + G + +A  + + +   G 
Sbjct: 550 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV 609

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  + +  I  L +  +++EA + F E++  G   DV TY++LISGFCK  ++++ +E
Sbjct: 610 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 669

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M  +GI PN   Y  ++    K  +++   +L   M + G  PD   Y+ +I   C
Sbjct: 670 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 729

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K   + EA ++++EM +  + P +  +  +VHG   +G + +A   F+EM+ +G  +   
Sbjct: 730 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS 789

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
           + T   L++   ++ K++ A  ++  ++ K    +   +T  I      G ++EA     
Sbjct: 790 FNT---LIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 846

Query: 550 DMMDADVMPQPDTFAKLMRGLKKL-YNRQIAAEITEKVRKMAAERQITFKM--YKRRGER 606
           +M + +++    T+  LM G  KL  + ++ A   + V K     ++T+ +  Y    E 
Sbjct: 847 EMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 906

Query: 607 DLKE--KAKKQVDGR 619
           +L E  K + +V G+
Sbjct: 907 NLVEAFKLRDEVVGK 921



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 208/439 (47%), Gaps = 6/439 (1%)

Query: 137 SYDVYRA--LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
            +DVY    L+ +L K         ++ EM  EK       ++ +++        + +A+
Sbjct: 225 GFDVYTYTYLVGALCKTGDLRGAKRVLIEM-DEKGLNPNEFIYSLVIEGMCQVGDIDEAV 283

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           E+   M + G  P+ + +  +   LC+   + EA   F+EM++   KP     ++L+ G+
Sbjct: 284 ELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGF 343

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            +EG + E   +   M   G   +++ YN L+ G  + GKM  A E+LK M   GC PN+
Sbjct: 344 MREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNS 403

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++ +LI+  CR   M  A     EME+       V+Y  +I+G C  + +    ++L+ 
Sbjct: 404 RTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK 463

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G+ PN + Y  +++A+  +  +EE   L+  M   G  PD+  YN +I    K G+
Sbjct: 464 MTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGK 523

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           ++EA     E++   L P   +F   + G+   G + EA +YF EM+  GL+  P     
Sbjct: 524 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM--PNNPLY 581

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+N   +A  +  A  ++  +   G   +V   + +IH L  NG V+EA     ++ +
Sbjct: 582 TVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 641

Query: 554 ADVMPQPDTFAKLMRGLKK 572
             ++P   T++ L+ G  K
Sbjct: 642 KGLVPDVFTYSSLISGFCK 660



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 196/391 (50%), Gaps = 9/391 (2%)

Query: 130  KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASA 187
            K+   V     Y +LI    K  +    + L +EM  +   P +    ++  L+     +
Sbjct: 640  KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF---IYNALVDGLCKS 696

Query: 188  RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
              +++A ++ D MP+ G EPD   +  ++D  CK+ +V EA  LF EM  +  +P    +
Sbjct: 697  GDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVY 756

Query: 247  TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             +L++G CKEG + +A  +  +M   GF   +  +N L+ GY +  K+ +A +L +EM  
Sbjct: 757  NALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIA 815

Query: 307  KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            K   P+  +YT +I   C+  KMEEAN  F EM+      D VTYT+L+ G+ K  +   
Sbjct: 816  KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSE 875

Query: 367  CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             + + + M+ +G+ P+++TY  ++ AH K++ L E  +L  E+   G +   + ++++I 
Sbjct: 876  VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLIT 935

Query: 427  LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              CK  +L EA  + +EM    L P   +   +V  F   G + EA   F+ +   GL+ 
Sbjct: 936  ALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLV- 994

Query: 487  APQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
             P   TL  L+N  L     E A+++   +V
Sbjct: 995  -PDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 208/470 (44%), Gaps = 37/470 (7%)

Query: 102 LRPGLTERVI--NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           L P +   V+  N+ GD   L   ++ W+  Q       D +  L   L     FG    
Sbjct: 69  LNPDVIRAVLHQNQVGDPKRL-LDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANG 127

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           ++ +M +                 ++S+ ++     VL     YG      VF  L+D+ 
Sbjct: 128 VLTQMIRTP---------------YSSSSILDS---VLFWFRNYG-GSSPVVFDILIDSY 168

Query: 220 CKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
            +   + EAA +F   + +    SL    SLL    K G +     V   M DA    D+
Sbjct: 169 KRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDV 228

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
             Y  L+    + G +  A  +L EM  KG +PN   Y+++I+ +C++  ++EA    VE
Sbjct: 229 YTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEA----VE 284

Query: 339 MERSGCEADVV----TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
           ++RS  E  +V    TYT + +G C++++++      + M + G+ P+      ++    
Sbjct: 285 LKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFM 344

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           ++ +++E + +   M   G   ++  YNV+I   CK G++++A  +   M      P + 
Sbjct: 345 REGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSR 404

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTLKALLNSLLRAQKVEMAKDVW 513
           +F +++ G+  +  +  A E   EM  R L+ SA  YG   A++N L   + + +A  + 
Sbjct: 405 TFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYG---AMINGLCHCKDLSLANKLL 461

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
             +   G + NV  ++I I +  S G ++EA    LD M    +  PD F
Sbjct: 462 EKMTFSGLKPNVVVYSILIMAYASEGRIEEA-RRLLDGMSCSGVA-PDIF 509



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 125/273 (45%), Gaps = 2/273 (0%)

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           + +LI +  RM  ++EA   F   +       ++   +L+    K   ++  +++ + M+
Sbjct: 161 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGML 220

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
              +  +  TY +++ A  K  +L     ++ EM + G  P+   Y++VI   C++G++ 
Sbjct: 221 DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDID 280

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EAV +   M    L P T ++ ++  G      + EA   F+EM   GL   P Y    A
Sbjct: 281 EAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL--KPDYNACSA 338

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L++  +R   ++    +   +V+ G  +N+  + + IH L   G +++A      M+   
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLG 398

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             P   TF  L+ G  + +N   A E+ +++ K
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 431


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 219/486 (45%), Gaps = 44/486 (9%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S   + AL+ +  K R    V  L+EEM     +P + T   + I +R       + +A 
Sbjct: 228 SLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYT---YTICIRVLGRDGKIDEAY 284

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
            ++  M   GC PD   +  L+DALC    + +A  LF +M+    KP    + +LL  +
Sbjct: 285 RIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKF 344

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
              G L + + +  +M+  G+ PD+V +  L++   + G++ +AF+LL  MR++G  PN 
Sbjct: 345 SDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNL 404

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++Y  LI  L R  ++++A   F  ME  G E    TY  LI    KS    +  E  + 
Sbjct: 405 HTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEK 464

Query: 374 MIQRGILPN-----------------------------------QLTYLHIMLAHEKKEE 398
           M  RGI PN                                    +TY  +M  + K  +
Sbjct: 465 MKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           ++E ++L+ EM K+ C PDV   N +I    K G ++EA  ++  ME  +L+P   ++ +
Sbjct: 525 VDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNI 584

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G   +G + +A + F+ M G G   +P   T   LL+ L +  +V++A  ++  + T
Sbjct: 585 LLAGLGKEGQIQKAVQLFESMNGHG--CSPNTITFNTLLDCLCKNDEVDLALKMFYKMTT 642

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
             C  +V  +   IH       +K A  +    M   + P   T   L+ G+ K    + 
Sbjct: 643 MNCRPDVLTFNTIIHGFIKQNQIKNAI-WLFHQMKKLLRPDHVTLCTLLPGVIKSGQIED 701

Query: 579 AAEITE 584
           A  ITE
Sbjct: 702 AFRITE 707



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 235/514 (45%), Gaps = 44/514 (8%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLI--TTEVFVILM 181
           Y+    + PN VH+ +    +++ L   R+   +  + + M++   Q+I    + ++I+ 
Sbjct: 110 YFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQR---QIIRRNVDTYLIIF 166

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFK 240
           +       +++A   L++M + G   + + +  L+  L ++   KEA +++  M  E  K
Sbjct: 167 KSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLK 226

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           PSL+ F++L+    K   +     +L +M+  G  P+I  Y   +    + GK+ +A+ +
Sbjct: 227 PSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRI 286

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEA---------------------------- 332
           +K M   GC P+  +YTVLI ALC   K+++A                            
Sbjct: 287 MKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSD 346

Query: 333 -------NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
                   + + EME  G   DVVT+T L++  CK+ +I+  +++LD+M ++G+LPN  T
Sbjct: 347 CGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHT 406

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++    +   L++ ++L   M  +G  P    Y ++I    K G   +A+  + +M+
Sbjct: 407 YNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMK 466

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
           A  ++P   +    ++     G L EA   F E+   GL  AP   T   ++    +  +
Sbjct: 467 ARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGL--APDSVTYNMMMKCYSKVGQ 524

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           V+ A  + S +    CE +V      I +L+  G V+EA      M + ++ P   T+  
Sbjct: 525 VDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNI 584

Query: 566 LMRGLKKLYNRQIAAEITEKVRKMA-AERQITFK 598
           L+ GL K    Q A ++ E +     +   ITF 
Sbjct: 585 LLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFN 618



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 209/474 (44%), Gaps = 48/474 (10%)

Query: 140  VYRALIKSLSKMRKFGAVWAL---MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
            V  +LI +L K  +    W +   MEEM    P ++T   + IL+        ++KA+++
Sbjct: 546  VINSLIDTLYKAGRVEEAWQMFCRMEEMNL-APTVVT---YNILLAGLGKEGQIQKAVQL 601

Query: 197  LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCK 255
             + M  +GC P+   F  LLD LCKN  V  A K+F +M     +P +  F ++++G+ K
Sbjct: 602  FESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIK 661

Query: 256  EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM----------- 304
            + ++  A ++  QMK     PD V    LL G  + G++ DAF + ++            
Sbjct: 662  QNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRS 720

Query: 305  ----------------------RRKGCDPNANSYTVLI---QALCRMEKMEEANRAFVEM 339
                                   R  C       +VLI   + LC+ +K   A   FV+ 
Sbjct: 721  FWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKF 780

Query: 340  ERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
             +  G +  +  Y  LI GF +   ++  + + + M   G  P+  TY  ++ AH K  +
Sbjct: 781  TKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGK 840

Query: 399  LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            + E  +L  EM   GC P+   YN+VI    K   L +A++++  + +   SP   +F  
Sbjct: 841  INELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGP 900

Query: 459  MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
            ++ G L  G L +A E F  MV  G    P       L+N   +   V+ A + +  +V 
Sbjct: 901  LIDGLLKSGRLDDAHEMFDGMVHYG--CRPNSAIYNILVNGYGKLGHVDTACEFFKRMVK 958

Query: 519  KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +G   ++ ++TI +  L   G V +A  Y   +  A + P    +  ++ GL +
Sbjct: 959  EGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGR 1012



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 162/353 (45%), Gaps = 36/353 (10%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            V   +IK L K +K      +  +  KE     T +V+ +L+  F     V+ A  + +E
Sbjct: 756  VLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEE 815

Query: 200  MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--------------------- 238
            M   GC PD F +  L+DA  K+  + E   L+DEM  R                     
Sbjct: 816  MKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNR 875

Query: 239  ---------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
                           F P+   F  L+ G  K G+L +A  +   M   G  P+  +YN 
Sbjct: 876  LDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNI 935

Query: 284  LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
            L++GY ++G +  A E  K M ++G  P+  SYT+L+  LC   ++++A   F +++++G
Sbjct: 936  LVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAG 995

Query: 344  CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
             + D+V Y  +I+G  +S++ +    +   M  RGI+P+  TY  ++L       +EE  
Sbjct: 996  LDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAG 1055

Query: 404  ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            ++  E++ IG  P+V  YN +IR     G  + A  ++ +M      P T +F
Sbjct: 1056 KIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTF 1108



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 172/361 (47%), Gaps = 4/361 (1%)

Query: 208  DEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKEGKLVEAKYV 265
            D+ V   ++  LCK+     A  +F +  +    KP+L+ +  L+ G+ +   +  A  +
Sbjct: 753  DDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNL 812

Query: 266  LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
              +MK AG  PD   YN+L+  + + GK+ + F+L  EM  +GC PN  +Y ++I  L +
Sbjct: 813  FEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVK 872

Query: 326  MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
              ++++A   +  +          T+  LI G  KS ++D  +E+ D M+  G  PN   
Sbjct: 873  SNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAI 932

Query: 386  YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
            Y  ++  + K   ++   E    M K G  PD+ +Y +++ + C  G + +A++ + +++
Sbjct: 933  YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLK 992

Query: 446  AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
             A L P   ++ +M++G        EA   F EM  RG++  P   T  +L+ +L     
Sbjct: 993  QAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIV--PDLYTYNSLILNLGIVGM 1050

Query: 506  VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
            +E A  ++  +   G + NV+ +   I     +G+ + A      MM     P   TFA+
Sbjct: 1051 IEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQ 1110

Query: 566  L 566
            L
Sbjct: 1111 L 1111



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 216/492 (43%), Gaps = 48/492 (9%)

Query: 161 MEEMRKEKPQLITTEVFVILMRRFASARM--VKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           +E   K K + I   +       ++ A M  + +A  + +E+   G  PD   +  ++  
Sbjct: 459 LETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKC 518

Query: 219 LCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
             K   V EA KL  EM + + +P +    SL+    K G++ EA  +  +M++    P 
Sbjct: 519 YSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPT 578

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V YN LL+G  + G++  A +L + M   GC PN  ++  L+  LC+ ++++ A + F 
Sbjct: 579 VVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFY 638

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           +M    C  DV+T+ T+I GF K  +I     +   M ++ + P+ +T   ++    K  
Sbjct: 639 KMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM-KKLLRPDHVTLCTLLPGVIKSG 697

Query: 398 ELEECV--------------------ELMGEM-------------RKIGC---VPDVSNY 421
           ++E+                      ++MG +              ++ C     D S  
Sbjct: 698 QIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVL 757

Query: 422 NVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
             +I++ CK  +   A NV+ +  +   + P    + +++ GFL    +  A   F+EM 
Sbjct: 758 IPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMK 817

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             G   AP   T  +L+++  ++ K+    D++  ++T+GC+ N   + + I +L  +  
Sbjct: 818 SAG--CAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNR 875

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV-----RKMAAERQI 595
           + +A     +++  D  P P TF  L+ GL K      A E+ + +     R  +A   I
Sbjct: 876 LDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNI 935

Query: 596 TFKMYKRRGERD 607
               Y + G  D
Sbjct: 936 LVNGYGKLGHVD 947


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 230/481 (47%), Gaps = 42/481 (8%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           +IKS S   +       ++   +  P++     +  L+ +     M    ++   ++ + 
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKM-GLFTYTTLLIQLNKLNMTSTVMDRYHQILRE 222

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G +P+  ++  +++ALCK+ +V++A  + +++ +   KP    +TS++ G+C+   L  A
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSA 282

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +  +M + G EP+   Y+ L++G    G++ +A + + EM R G  P  +++T  I A
Sbjct: 283 FEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVA 342

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC M ++E+A + F++M++ GC+ +V TYT+LISG   SR       +   M + G++PN
Sbjct: 343 LCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRM---AIGLFHRMSRDGVVPN 399

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  +M    +  E++  + +   M K GC+P+ S+YN +IR  C +G+ ++A+++  
Sbjct: 400 TVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLT 459

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQG-------------------------------CLIE 471
            M     +P   ++ +++ G+   G                               C I 
Sbjct: 460 NMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKIS 519

Query: 472 ACEY----FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
             E     F EM+ RGL   P   T  AL++   + +K++ A  +   +   GC  NV  
Sbjct: 520 KMELASGMFNEMMDRGL--CPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQT 577

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           + + IH L    +   A   C  M++  + P   T++ ++ GL       +A E+  K+ 
Sbjct: 578 YNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMV 637

Query: 588 K 588
           K
Sbjct: 638 K 638



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 188/404 (46%), Gaps = 14/404 (3%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKK 192
           VH++    A I +L  M +    W +  +M+K+  KP + T    +      +  R+ + 
Sbjct: 333 VHTFT---APIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI------SGQRVSRM 383

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
           AI +   M + G  P+   +  L++ L +N  +  A  +F+ M +    P+   +  L+ 
Sbjct: 384 AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+C  G   +A  +L  M      P +V YN ++ GY   G    A  +L+ M+  GC P
Sbjct: 444 GYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQP 503

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  SYT LI   C++ KME A+  F EM   G   + VTYT LISG+CK  K+D    +L
Sbjct: 504 DEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARML 563

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + M + G  PN  TY  ++    K+       EL   M +    PDV  Y+ VI   C  
Sbjct: 564 ERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNN 623

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G +  A+ ++N+M      P   ++  ++     +G + EA E F E+  +GL+  P   
Sbjct: 624 GAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLI--PDEV 681

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           T   ++   + + KV+ A D    ++  GC+  +  + + I  L
Sbjct: 682 TYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 203/430 (47%), Gaps = 32/430 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI+    +       +++  M K +P   T   + I+++ +  +     AI VL+ M
Sbjct: 438 YNELIRGYCTIGDTEKAMSMLTNMLKGRPT-PTLVTYNIIIKGYCDSGDTDVAIRVLELM 496

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC+PDE+ +  L+   CK S ++ A+ +F+EM +R   P+   +T+L+ G+CK+ KL
Sbjct: 497 KANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKL 556

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L +MK +G  P++  YN L+ G  +    + A EL K M  +   P+  +Y+ +
Sbjct: 557 DCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTV 616

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC    +  A   F +M + GC  ++ TY++LI    +  +++   E+   + ++G+
Sbjct: 617 INGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGL 676

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+++TY+ ++       +++   + +GEM   GC P +  Y+V+I+         + V 
Sbjct: 677 IPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVA 736

Query: 440 VWNEMEAASLSPGTDSFV-------------------------VMVHGFLGQGCLIEACE 474
           + N   AAS S   D  +                          ++      G   EA  
Sbjct: 737 LPN---AASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANN 793

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            ++ MV +     P   T K  L SLLRA KV++A DV+  +  + CEL++  +   I +
Sbjct: 794 LYRSMVSQS--QCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICT 851

Query: 535 LFSNGHVKEA 544
           L      KEA
Sbjct: 852 LCQLHRRKEA 861



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 166/383 (43%), Gaps = 22/383 (5%)

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
           KYG  PD F               K A +L  E R+R     R    ++     + ++ +
Sbjct: 134 KYG--PDTFA--------------KVAMRLL-ESRDRPAAVGRARIHMIKSCSNKAEMTQ 176

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A   L      G +  +  Y  LL    ++   +   +   ++ R+G  PN   Y  +I 
Sbjct: 177 ALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVIN 236

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           ALC+   + +A     ++ +SG + D  TYT++I G+C++R +D  +EI + M + G  P
Sbjct: 237 ALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEP 296

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  TY  ++        + E ++ + EM + G +P V  +   I   C +G +++A  ++
Sbjct: 297 NAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIF 356

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            +M+     P   ++  ++    GQ     A   F  M   G++  P   T  AL+N L+
Sbjct: 357 IDMKKKGCKPNVYTYTSLIS---GQRVSRMAIGLFHRMSRDGVV--PNTVTYNALMNVLM 411

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
              +++ A  V++ +   GC  N  ++   I    + G  ++A S   +M+     P   
Sbjct: 412 ENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLV 471

Query: 562 TFAKLMRGLKKLYNRQIAAEITE 584
           T+  +++G     +  +A  + E
Sbjct: 472 TYNIIIKGYCDSGDTDVAIRVLE 494



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 161/365 (44%), Gaps = 40/365 (10%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y ALI    K  K      ++E M++   +P +   + + +L+        
Sbjct: 538 PNEV----TYTALISGYCKDEKLDCAARMLERMKRSGCRPNV---QTYNVLIHGLTKQNN 590

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
              A E+   M +    PD   +  +++ LC N ++  A ++F++M +    P+L  ++S
Sbjct: 591 FSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSS 650

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+    +EG++ EA+ +  ++K  G  PD V Y  ++      GK+  AF+ L EM   G
Sbjct: 651 LIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAG 710

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA---------DVVT--------- 350
           C P   +Y VLI+ L    + E      V +  +   +         DV++         
Sbjct: 711 CQPTLQTYDVLIKGL----QNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAEL 766

Query: 351 --------YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
                   Y  L+S   +S +      +  SM+ +   PNQ TY H +++  +  +++  
Sbjct: 767 DFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLA 826

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           +++   M    C   ++ Y  +I   C+L   KEA  V+ +M + +L+     + ++++G
Sbjct: 827 MDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILING 886

Query: 463 FLGQG 467
            LG G
Sbjct: 887 LLGAG 891



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 28/260 (10%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y +LI++L +  +      +  E++K+   LI  EV +V ++     +  V +A + L 
Sbjct: 647 TYSSLIQALGQEGRVEEAEEMFSELKKQG--LIPDEVTYVKMIEVCVMSGKVDRAFDFLG 704

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSV---------KEAAKLFDEM-------------- 235
           EM   GC+P    +  L+  L +N  V           +   FD+               
Sbjct: 705 EMINAGCQPTLQTYDVLIKGL-QNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKL 763

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
               F+ S + + +LL    + G+  EA  +   M      P+   Y + L    +  K+
Sbjct: 764 AELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKV 823

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A ++ K M  + C+ +   Y  LI  LC++ + +EA   F +M      AD + +T L
Sbjct: 824 DLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTIL 883

Query: 355 ISGFCKSRKIDRCYEILDSM 374
           I+G   +   D C E L  M
Sbjct: 884 INGLLGAGYKDLCMEFLHIM 903


>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
 gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
          Length = 500

 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 222/467 (47%), Gaps = 21/467 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + +LI +LSK  + G     +E M      P ++T   F  L+R F   RMV++A E+  
Sbjct: 14  FASLIDALSKSNRLGDAARALELMCDAGIHPDVVT---FTALIRGFCKNRMVERAWEIFQ 70

Query: 199 EMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--ERFKPSLRHFTSLLYGWCK 255
           EM K   C+PD F++G L+D  CK   +  A +L  EMR   R +P +  + S++ G C+
Sbjct: 71  EMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCR 130

Query: 256 EGKLVEA-KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             + +EA K++   M   G  P +V Y +L+ G  +  KM  A  +   M  +   P   
Sbjct: 131 SNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPTIV 190

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           SY+V+I  L +  ++ +A R   EME  GCE +VV YTTLI G CKS  +D  Y +   M
Sbjct: 191 SYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIM 250

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            + G  PNQ TY  ++    + +  E  + L   +R   C  DV+ Y  V+   C+   L
Sbjct: 251 KRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDY-CPLDVAMYTAVVSGLCRERRL 309

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            +A  ++ EM  A +S  T ++ V++HG    G   EA    +E+           G + 
Sbjct: 310 DDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSEEAFRILEEL-------GDDPGCVA 362

Query: 495 ALL--NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
            LL  N+++    +E    ++  +  +G   +   ++  I  L  +G ++ A   C +M+
Sbjct: 363 NLLTYNTVIAGCCLESGMVLFYEMRQRGIAPDFATYSALIDRLLGSGEIRRAFDLCEEML 422

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM 599
            + + P      +++  L       +AA++ E    MA +   +F +
Sbjct: 423 ASGLSPPSGVLGRVVARLCWSRRGDLAAKLIEMA--MAVDDTASFSL 467



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 150/342 (43%), Gaps = 41/342 (11%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV--------------------- 279
           P+   F SL+    K  +L +A   L  M DAG  PD+V                     
Sbjct: 9   PNQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEI 68

Query: 280 ---------------VYNNLLSGYAQMGKMTDAFELLKEMR-RKGCDPNANSYTVLIQAL 323
                          +Y  L+ GY +  +M  A ELL+EMR  +   P+   Y  ++  L
Sbjct: 69  FQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGL 128

Query: 324 CRMEKMEEANRAFVE-MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           CR  +  EA +   E M R GC   VVTYT+LI G CK++K+     I ++M++R I P 
Sbjct: 129 CRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPT 188

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            ++Y  I+    K   + +   ++ EM  +GC  +V  Y  +I   CK G L +A  ++ 
Sbjct: 189 IVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYR 248

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M+ +   P   ++  ++  F        A   F  +     L    Y    A+++ L R
Sbjct: 249 IMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPLDVAMY---TAVVSGLCR 305

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            ++++ A+ ++  +   G   + +A+ + +H  F +G  +EA
Sbjct: 306 ERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSEEA 347



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 5/260 (1%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN +++  LI AL +  ++ +A RA   M  +G   DVVT+T LI GFCK+R ++R +EI
Sbjct: 9   PNQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEI 68

Query: 371 LDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMR-KIGCVPDVSNYNVVIRLA 428
              MI+     P+   Y  ++  + K+  ++  +EL+ EMR +    PDV  YN ++   
Sbjct: 69  FQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGL 128

Query: 429 CKLGELKEAVNVWNE-MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
           C+     EA    +E M     SP   ++  ++ G      +  A   +  M+ R +   
Sbjct: 129 CRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKI--Q 186

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   +   +++ L +A +V  A  V   + T GCELNV  +T  I  L  +G + +A + 
Sbjct: 187 PTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYAL 246

Query: 548 CLDMMDADVMPQPDTFAKLM 567
              M  +   P   T+A L+
Sbjct: 247 YRIMKRSGAFPNQRTYATLI 266


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 247/504 (49%), Gaps = 13/504 (2%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRYYMWASKQPN 133
           E+  RILK F    P  E AL+   + +   L   V+    D G N+  +++ WA+K+ N
Sbjct: 62  ERFIRILKIFKWG-PDAERALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRN 118

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           Y H    Y ALI  L  + ++G +W +++EM +    ++T      ++R   +A+M+ KA
Sbjct: 119 YQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKA 178

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLY 251
           I +  ++    C+P    +  ++  L      ++  +L++EM      +P    +++L+ 
Sbjct: 179 ITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALIS 238

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +CK G+   A  +L +MK+ G +P   +Y  ++S + ++  +  A  L +EMR   C P
Sbjct: 239 AFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRP 298

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT LI+ L +  +++EA   + EM+R GC+ D V    +I+   K+ ++D   ++ 
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLF 358

Query: 372 DSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           + M     +PN +TY  I+ A  E K  + E       M+  G  P    Y+++I   CK
Sbjct: 359 EEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCK 418

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMVGR-GLLSAP 488
              +++A+ +  EM+     P   ++  ++   LG+    + ACE F+E+    G  SA 
Sbjct: 419 TNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELKENCGSSSAR 477

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            Y     ++  L +A +++ A +++  +   GC  NVYA+   +  L     + EA +  
Sbjct: 478 VYAV---MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTM 534

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
             M +   +P  +++  ++ GL K
Sbjct: 535 RKMQEHGCLPDINSYNIILNGLAK 558



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 163/349 (46%), Gaps = 7/349 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I    K+       +L EEMR    +P + T   +  L+R    A  + +A    
Sbjct: 267 IYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFT---YTELIRGLGKAGRIDEAYHFY 323

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYG-WCK 255
            EM + GC+PD  V   +++ L K   + +  KLF+EM      P++  + +++   +  
Sbjct: 324 HEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFES 383

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + ++ E      +MK +G  P    Y+ L+ G+ +  ++  A  LL+EM  KG  P   +
Sbjct: 384 KSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAA 443

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI AL + ++ + A   F E++ +   +    Y  +I    K+ ++D    + D M 
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMS 503

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  PN   Y  +M    +   L+E +  M +M++ GC+PD+++YN+++    K G   
Sbjct: 504 KLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            A+ +   M+ +++ P   S+  ++      G   EA E  KEM   G 
Sbjct: 564 RAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGF 612



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 145/332 (43%), Gaps = 14/332 (4%)

Query: 110 VINRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +I   G AG +   Y+ +   Q     P+ V    V   +I  L K  +      L EEM
Sbjct: 306 LIRGLGKAGRIDEAYHFYHEMQREGCKPDTV----VMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 165 RKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
                 P ++T     I+   F S   V +     + M   G  P  F +  L+D  CK 
Sbjct: 362 GVSHCIPNVVTYNT--IIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKT 419

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           + +++A  L +EM E+ F P    + SL+    K  +   A  +  ++K+        VY
Sbjct: 420 NRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVY 479

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             ++    + G++ DA  L  EM + GC PN  +Y  L+  L R   ++EA     +M+ 
Sbjct: 480 AVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQE 539

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  D+ +Y  +++G  K+    R  E+L +M    I P+ ++Y  ++ A       EE
Sbjct: 540 HGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEE 599

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
             ELM EM  +G   D+  Y+ ++    K+ +
Sbjct: 600 AAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 212/407 (52%), Gaps = 9/407 (2%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEV-LDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           +P ++T   F  L+  F    MV KA+   LD M K G   DEF +G L++ LCKN   +
Sbjct: 122 QPNMVT---FNTLINGFCINGMVSKAMAFRLDLMAK-GYPLDEFSYGSLINGLCKNGQTR 177

Query: 227 EAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A +L  +M E   +P+L  +++++ G CK+  + +A  +   +   G   D+V YN+L+
Sbjct: 178 DALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLI 237

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G   +G+  +A  LL  M R   +P+  ++ +L+ ALC+  ++ EA   F  M + G +
Sbjct: 238 HGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEK 297

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            D+VTY  L+ GFC S  +    E+ + M++RG+ P+ L Y  ++  + K + ++E + L
Sbjct: 298 PDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVL 357

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             E+R    VP+++ YN +I   CKLG +     + +EM     SP   ++ + +  F  
Sbjct: 358 FKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCK 417

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
                +A   F+++V +G+   P +     ++ +  + +K+++A++    ++  GC  NV
Sbjct: 418 SKPYEKAISLFRQIV-QGIW--PDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNV 474

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +TI I++L  +    EA +    M D D  P   TF  ++  L++
Sbjct: 475 RTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQE 521



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 134/263 (50%), Gaps = 6/263 (2%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
            V+A+M + R EKP ++T      LM  F  +  V +A E+ + M K G EPD   +  L
Sbjct: 286 GVFAVMMK-RGEKPDIVTYNA---LMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVL 341

Query: 216 LDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  CK   V EA  LF E+R +   P+L  + SL+ G CK G++   + ++ +M D G 
Sbjct: 342 INGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQ 401

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PDIV YN  L  + +      A  L +++  +G  P+   Y V+++  C+ EK++ A  
Sbjct: 402 SPDIVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYDVIVENFCKGEKLKIAEE 460

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
           A   +   GC  +V TYT +I+  CK    D    +L  M      P+ +T+  I+ A +
Sbjct: 461 ALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQ 520

Query: 395 KKEELEECVELMGEMRKIGCVPD 417
           ++ E ++  +L  EM + G V D
Sbjct: 521 ERNETDKAEKLRLEMIERGLVND 543



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 118/300 (39%), Gaps = 2/300 (0%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D       M RK   P    +  L+ A+ RM     A   F ++   G    + T T LI
Sbjct: 38  DTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILI 97

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           + +C    +   + +L ++++ G  PN +T+  ++        + + +    ++   G  
Sbjct: 98  NCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYP 157

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            D  +Y  +I   CK G+ ++A+ +  +ME   + P   ++  ++ G      + +A   
Sbjct: 158 LDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRL 217

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F  +  RG+L         +L++      +   A  + + +V      + Y + I + +L
Sbjct: 218 FSLVTSRGILV--DVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDAL 275

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
              G + EA      MM     P   T+  LM G     N   A E+  ++ K   E  +
Sbjct: 276 CKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDV 335


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 181/350 (51%), Gaps = 6/350 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY  LI    K+          +EM  +K  P  IT   +  L++ F     V +   + 
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYIT---YTTLIQGFGQGGKVIEPQNLF 421

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM   G +PDE  +  L+D  CK   +  A  L +EM +    P++  + +L+ G CK 
Sbjct: 422 HEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+L  A  +L +M+  G + ++ +YN++++G  + G +  A +L+KEM   G DP+A +Y
Sbjct: 482 GELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY 541

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T +I A CR+  +++A++   EM   G +  VVT+  L++GFC    ++    +L  M++
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI+P+ +TY  +M  H  +  +    ++   MR  G  PD + YN++I+  CK   LKE
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           A  ++ EM      P   S+  ++  F  +    EA E F+EM G GL++
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVA 711



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 210/445 (47%), Gaps = 9/445 (2%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
            T  + I++        VK+A  +L +M      PD   +  ++D  C    +K+A KL 
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLM 316

Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           D+M+ +  KP+   + S++   CK GK  EA+ VL +M      PD VVY  L+ G+ ++
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKL 376

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G +  A +   EM  K   P+  +YT LIQ   +  K+ E    F EM   G + D VTY
Sbjct: 377 GHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTY 436

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           TTLI  +CK+ ++   + + + M+Q G+ PN +TY  ++    K  EL+   EL+ EMRK
Sbjct: 437 TTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   +V  YN ++   CK G +++A+ +  EME A + P   ++  ++  +   G + +
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDK 556

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A +  +EM+ RGL   P   T   L+N       +E    +   ++ KG   +   +   
Sbjct: 557 AHKLLQEMLDRGL--QPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTL 614

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA----AEITEK-- 585
           +        +         M +  V P  +T+  L++G  K  N + A     E+ EK  
Sbjct: 615 MKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY 674

Query: 586 VRKMAAERQITFKMYKRRGERDLKE 610
           V  + +   +  + YK+R   + +E
Sbjct: 675 VPTVTSYNALIKRFYKKRKFXEARE 699



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 45/350 (12%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           P+Y+     Y  LI+   +  K      L  EM  R  KP  +T   +  L+  +  A  
Sbjct: 396 PDYI----TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVT---YTTLIDVYCKAGE 448

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +  A  + +EM + G  P+   +G L+D LCK+  +  A +L DEMR++  + ++  + S
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK G + +A  ++ +M+ AG +PD + Y  ++  Y ++G +  A +LL+EM  +G
Sbjct: 509 MVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRG 568

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL-------------- 354
             P   ++ VL+   C +  +E+ +R    M   G   D +TY TL              
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 355 ---------------------ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
                                I G CK+R +   + +   MI++G +P   +Y  ++   
Sbjct: 629 KIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRF 688

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            KK +  E  EL  EMR  G V D   YN  + +  + G+++  +N+ +E
Sbjct: 689 YKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDE 738



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 161/345 (46%), Gaps = 37/345 (10%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL-LKEMRRKGCDPNANS 315
           G L EA+ +L ++   G    +   N  LS   ++   ++  E+ +K     G   N  S
Sbjct: 204 GHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGIEMAIKVFCEYGISWNTTS 260

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y ++I +LCR+ K++EA+R  ++M+      DVV+Y+T+I G+C   ++ +  +++D M 
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G+ PN+ TY  I+L   K  +  E  +++ EM     +PD   Y  +I    KLG ++
Sbjct: 321 IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--------- 486
            A   ++EM +  +SP   ++  ++ GF   G +IE    F EM+ RGL           
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 487 ------------------------APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                                    P   T  AL++ L +  +++ A ++   +  KG +
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           LNV  +   ++ +   G++++A     +M  A + P   T+  ++
Sbjct: 501 LNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + Y  LIK   K R     W L +EM  EK  + T   +  L++RF   R   +A E+ +
Sbjct: 644 NTYNILIKGHCKARNLKEAWFLYKEM-IEKGYVPTVTSYNALIKRFYKKRKFXEARELFE 702

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           EM  +G   D  ++   +D   +   V+    L DE  E+
Sbjct: 703 EMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 220/433 (50%), Gaps = 13/433 (3%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE----KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            I SL+ + + G  +++M ++ K      P  +TT     LM+         +A+ + D 
Sbjct: 97  FINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTT-----LMKGLCLKGRTFEALNLYDH 151

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
               G   DE  +G L++ LCK    ++A +L  +M +   +P+L  +  ++ G CKEG 
Sbjct: 152 AVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGL 211

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-RRKGCDPNANSYT 317
           + EA  +  +M   G   D+  YN+L+ G+   G+   A  LL EM  ++   P+  ++ 
Sbjct: 212 VTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFN 271

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+ ALC++  + EA   F  M + G E DVV+   L++G+C    +    E+ D M++R
Sbjct: 272 ILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVER 331

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LPN ++Y  ++  + K + ++E + L+ EM +   VPD   YN ++    K G +   
Sbjct: 332 GKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYE 391

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            ++   M A+  +P   ++ V++  +L + CL +A   F+ +V  G+  +P   T   L+
Sbjct: 392 WDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGI--SPNIRTYNILI 449

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + L +  +++ AK+++  +  KGC  N+  + I I+ L   G + EA +  L+M+D    
Sbjct: 450 DGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFP 509

Query: 558 PQPDTFAKLMRGL 570
           P   TF  L+R L
Sbjct: 510 PNAVTFDPLVRAL 522



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 178/365 (48%), Gaps = 9/365 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L KM K      L+ +M K   +P LI   ++ +++       +V +A  +  
Sbjct: 164 YGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLI---MYNMVVDGLCKEGLVTEACGLCS 220

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKE 256
           EM   G   D F +  L+   C     + A +L +EM  +E  +P +  F  L+   CK 
Sbjct: 221 EMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKL 280

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G + EA+ V   M   G EPD+V  N L++G+   G M++A E+   M  +G  PN  SY
Sbjct: 281 GMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISY 340

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI   C+++ ++EA R   EM +     D VTY  L+ G  KS ++   ++++++M  
Sbjct: 341 STLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRA 400

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G  P+ +TY  ++  + K+E L++ + L   +   G  P++  YN++I   CK G +K 
Sbjct: 401 SGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKA 460

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++  +      P   ++ +M++G   +G L EA     EMV  G    P   T   L
Sbjct: 461 AKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGF--PPNAVTFDPL 518

Query: 497 LNSLL 501
           + +LL
Sbjct: 519 VRALL 523



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 193/480 (40%), Gaps = 113/480 (23%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           L+ S+ K + +  V +L   +  +   KP L+T  +F+  +       +   A  V+ ++
Sbjct: 61  LLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIFINSLTHLGQMGL---AFSVMAKI 117

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
            K G   D F                                    T+L+ G C +G+  
Sbjct: 118 VKRGFGVDPFTL----------------------------------TTLMKGLCLKGRTF 143

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +       GF  D V Y  L++G  +MGK  DA ELL++M + G  PN   Y +++
Sbjct: 144 EALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVV 203

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             LC+   + EA     EM   G   DV TY +LI GFC + +      +L+ M+     
Sbjct: 204 DGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVM---- 259

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
                          KE++                PDV  +N+++   CKLG + EA NV
Sbjct: 260 ---------------KEDVR---------------PDVYTFNILVDALCKLGMVAEARNV 289

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           +  M    L P   S   +++G+  +GC+ EA E F  MV RG L  P   +   L+N  
Sbjct: 290 FGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKL--PNVISYSTLINGY 347

Query: 501 LRAQKVEMA---------KDVWSCIVTKGCELN--------VYAWTIWIHSLFSNGHVKE 543
            + + V+ A         +++    VT  C L+        +Y W + + ++ ++G   +
Sbjct: 348 CKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDL-VEAMRASGQAPD 406

Query: 544 ACSY-----------CLD--------MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
             +Y           CLD        ++D  + P   T+  L+ GL K    + A EI +
Sbjct: 407 LITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQ 466



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASAR 188
           Q N V     Y  L+  LSK  +    W L+E MR   + P LIT   + +L+  +    
Sbjct: 365 QRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLIT---YNVLLDDYLKRE 421

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA+ +   +   G  P+   +  L+D LCK   +K A ++F  +  +  +P++R + 
Sbjct: 422 CLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYN 481

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            ++ G  +EG L EA+ +L++M D GF P+ V ++ L+
Sbjct: 482 IMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLV 519


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 212/435 (48%), Gaps = 8/435 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ +++KM KF  V +L E+M+       L T  +F+     F     +  A+ VL 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI---NCFCRRSQLSLALAVLA 142

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K G EPD      LL+  C +  + +A  L D+M E  +KP    FT+L++G     
Sbjct: 143 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  ++ QM   G +PD+V Y  +++G  + G +  A  LLK+M +   + +   Y 
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+ + M++A   F EM+  G   DV TY++LIS  C   +      +L  MI+R
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +T+  ++ A  K+ +L E  +L  EM K    PD+  Y+ +I   C    L EA
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +++  M +    P   ++  ++ GF     + E  E F+EM  RGL+      T   L+
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV--TYTTLI 440

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +   +A+  + A+ V+  +V+ G   N+  + I +  L  NG + +A      +  + + 
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 500

Query: 558 PQPDTFAKLMRGLKK 572
           P   T+  ++ G+ K
Sbjct: 501 PDIYTYNIMIEGMCK 515



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 195/390 (50%), Gaps = 12/390 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y  ++  L K        +L+++M K K +     ++  ++      + +
Sbjct: 220 QPDLV----TYGTVVNGLCKRGDIDLALSLLKKMEKGKIE-ADVVIYNTIIDGLCKYKHM 274

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  PD F +  L+  LC      +A++L  +M ER   P++  F++L
Sbjct: 275 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 334

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGKLVEA+ +  +M     +PDI  Y++L++G+    ++ +A  + + M  K C
Sbjct: 335 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y+ LI+  C+ +++EE    F EM + G   + VTYTTLI GF ++R  D    
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ PN LTY  ++    K  +L + + +   +++    PD+  YN++I   C
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 514

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++++   ++  +    +SP   ++  M+ GF  +G   EA    K+M   G L  P 
Sbjct: 515 KAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPL--PN 572

Query: 490 YGTLKALLNSLL----RAQKVEMAKDVWSC 515
            GT   L+ + L    R    E+ K++ SC
Sbjct: 573 SGTYNTLIRARLRDGDREASAELIKEMRSC 602



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 211/459 (45%), Gaps = 9/459 (1%)

Query: 141 YRALIKS-LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           YR ++++ LS + K      L  +M K +P     E F  L+   A     +  I + ++
Sbjct: 50  YREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNKFELVISLGEQ 108

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
           M   G   D + +   ++  C+ S +  A A L   M+  ++P +   +SLL G+C   +
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  ++ QM + G++PD   +  L+ G     K ++A  L+ +M ++GC P+  +Y  
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT 228

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++  LC+   ++ A     +ME+   EADVV Y T+I G CK + +D    +   M  +G
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG 288

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKIGCVPDVSNYNVVIRLACKLGELKE 436
           I P+  TY  ++          +   L+ +M  RKI   P+V  ++ +I    K G+L E
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN--PNVVTFSALIDAFVKEGKLVE 346

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +++EM   S+ P   ++  +++GF     L EA   F+ M+ +     P   T   L
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF--PNVVTYSTL 404

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +    +A++VE   +++  +  +G   N   +T  IH  F       A      M+   V
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            P   T+  L+ GL K      A  + E +++   E  I
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDI 503



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 167/331 (50%), Gaps = 9/331 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI  L    ++     L+ +M  RK  P ++T   F  L+  F     + +A ++ D
Sbjct: 296 YSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT---FSALIDAFVKEGKLVEAEKLYD 352

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKE 256
           EM K   +PD F +  L++  C +  + EA  +F+ M  ++ F P++  +++L+ G+CK 
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYSTLIKGFCKA 411

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ E   +  +M   G   + V Y  L+ G+ Q     +A  + K+M   G  PN  +Y
Sbjct: 412 KRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC+  K+ +A   F  ++RS  E D+ TY  +I G CK+ K++  +E+  ++  
Sbjct: 472 NILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSL 531

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ PN + Y  ++    +K   EE   L+ +M++ G +P+   YN +IR   + G+ + 
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +  +  EM +   + G  S + +V   L  G
Sbjct: 592 SAELIKEMRSCGFA-GDASTIGLVTNMLHDG 621


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 192/411 (46%), Gaps = 33/411 (8%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ER 238
           L+        V+ A+ VLD+M   GC PD   +  LL+A CK    ++A +L D MR E 
Sbjct: 13  LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 72

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P+   +  L+ G C EG + +A  +L  +   G +P  V YN +L G     +  DA 
Sbjct: 73  CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 132

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL+ EM R+ C PN  ++ V+I +LCR   +++A +   +M + GC A++VTY  +I+G 
Sbjct: 133 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 192

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+ R +D    +L  M   G  P+ +TY  ++          +  ELM  M + GC+PD 
Sbjct: 193 CEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDN 252

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +N +I   C+ G + +A+ V+ +M     +P + ++  ++ G      L +A E F E
Sbjct: 253 VTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNE 312

Query: 479 MVGRG--------LLS------------------------APQYGTLKALLNSLLRAQKV 506
           M  +G        LL+                        +P      A+L  L R  K 
Sbjct: 313 MGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKT 372

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           E A D+ + +V+ GC  +   + I I  L   G++ EA    + +   DV+
Sbjct: 373 EFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVL 423



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 191/412 (46%), Gaps = 53/412 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++  K R +     L++ MR E   P  +T   + +LM        V  A+E+L 
Sbjct: 45  YNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVT---YNVLMDGMCGEGDVDDALELLR 101

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            +P +GC+P    +  +L  LC      +A +L  EM RE   P+   F  ++Y  C++G
Sbjct: 102 NLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKG 161

Query: 258 KLVEAKYVL-----------------------------------VQMKDAGFEPDIVVYN 282
            L +A  +L                                    +MK  G +PDIV YN
Sbjct: 162 LLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYN 221

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            LL G     +  DA EL+  M + GC P+  ++  LI  LC+   M +A   F +M   
Sbjct: 222 TLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDK 281

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  + +TY+T+ISG  K+ K+D+  E+ + M  +G  P+++ Y  +       + +EE 
Sbjct: 282 GCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEA 340

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++ + +++  G  P    YN ++   C+ G+ + A+++   M ++   P   ++V+++ G
Sbjct: 341 IQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEG 400

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
              +G L EA E   ++  R             L+NSL++++ + + +++ +
Sbjct: 401 LAYEGYLNEARELLIKLCSR-----------DVLVNSLIKSEALLLDQNIHA 441



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 182/379 (48%), Gaps = 6/379 (1%)

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
           +P+ + +  L+  LC+   V++A  + D+M  R   P +  +  LL   CK     +A  
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           ++  M+  G  P+ V YN L+ G    G + DA ELL+ +   GC P+  +Y  +++ LC
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLC 123

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
             E+  +A+    EM R  C  +  T+  +I   C+   + +  ++L+ M + G   N +
Sbjct: 124 SAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 183

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY  I+    ++  ++  + L+ +M+  GC PD+  YN +++  C      +A  + + M
Sbjct: 184 TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNM 243

Query: 445 EAASLSPGTDSFVVMVHGFLGQ-GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
                 P   +F  ++ GFL Q G +++A E FK+M  +G    P   T   +++ L +A
Sbjct: 244 TQNGCLPDNVTFNTLI-GFLCQKGLMVDAIEVFKQMPDKG--CTPNSITYSTIISGLAKA 300

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            K++ A ++++ +  KG   +   + +    L  +  ++EA      + D+ + P    +
Sbjct: 301 TKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLY 359

Query: 564 AKLMRGLKKLYNRQIAAEI 582
             ++ GL +    + A +I
Sbjct: 360 NAILLGLCRNGKTEFAIDI 378



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 98/218 (44%), Gaps = 2/218 (0%)

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN  TY  ++    ++ ++ + + ++ +M   GC PDV  YN+++   CK    ++A+
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + + M A   +P   ++ V++ G  G+G + +A E  + +   G    P       +L 
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHG--CKPSTVNYNTVLK 120

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L  A++   A ++ + ++ + C  N   + + I+SL   G +++A      M       
Sbjct: 121 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 180

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
              T+  ++ GL +  N   A  +  K++    +  I 
Sbjct: 181 NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIV 218


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 230/471 (48%), Gaps = 22/471 (4%)

Query: 79  RILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSY 138
           R+L+  H+R           G  L  G    V+N   D G++    ++     P++    
Sbjct: 215 RVLEDLHAR-----------GCALDVGNCNLVLNAICDQGSVDEALHLL-RDLPSFGCEP 262

Query: 139 DV--YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           DV  Y A++K L   +++G V  LMEEM R   P  I T  F  L+       + ++  E
Sbjct: 263 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVT--FNTLISYLCRNGLFERVHE 320

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
           VL +M ++GC PD  ++  ++D +CK   ++ A ++ + M     KP++  + +LL G C
Sbjct: 321 VLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLC 380

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              +  E + +L +M D     D V +N L+  + Q G +    ELL++M   GC P+  
Sbjct: 381 SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVI 440

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT +I   C+   ++EA      M   GC+ + ++YT ++ G C + +     +++  M
Sbjct: 441 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 500

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           IQ+G   N +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G+ 
Sbjct: 501 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 560

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTL 493
            EA+ + N M    +SP T  +  +      +G + +  + F  +    + S A  Y   
Sbjct: 561 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLY--- 617

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            A+++SL +  + E A +  + +V+ GC  N   +TI I  L S G VKEA
Sbjct: 618 NAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEA 668



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 187/397 (47%), Gaps = 3/397 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  ++R   +   +  A+ VLDEMP+ GC P   ++  +L+A C+    + A ++ +++ 
Sbjct: 162 YFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLH 221

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R     + +   +L   C +G + EA ++L  +   G EPD+V YN +L G     +  
Sbjct: 222 ARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWG 281

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
              EL++EM R  C PN  ++  LI  LCR    E  +    +M   GC  D+  Y T+I
Sbjct: 282 CVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 341

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G CK   ++  +EIL+ M   G+ PN + Y  ++      E  EE  EL+ EM    C 
Sbjct: 342 DGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 401

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            D   +N+++   C+ G +   + +  +M      P   ++  +++GF  +G + EA   
Sbjct: 402 LDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVML 461

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            K M   G    P   +   +L  L  A++   A+D+ S ++ +GC LN   +   I+ L
Sbjct: 462 LKSMTACG--CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFL 519

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              G V++A      M+     P   +++ ++ GL K
Sbjct: 520 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 556



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 155/316 (49%), Gaps = 8/316 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  L+K L    ++     L+ EM  K+ P  +    F IL+  F    +
Sbjct: 366 KPNVV----CYNTLLKGLCSAERWEETEELLAEMFDKDCP--LDDVTFNILVDFFCQNGL 419

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V + IE+L++M ++GC PD   +  +++  CK   + EA  L   M     KP+   +T 
Sbjct: 420 VDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 479

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +L G C   + V+A+ ++ QM   G   + + +N L++   + G +  A ELLK+M   G
Sbjct: 480 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 539

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  SY+ +I  L +  K +EA      M   G   + + Y+++ S   +  +I++  
Sbjct: 540 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 599

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ D++    I  + + Y  ++ +  K+ E E  +E +  M   GCVP+ S Y ++IR  
Sbjct: 600 QMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 659

Query: 429 CKLGELKEAVNVWNEM 444
              G +KEA  +  E+
Sbjct: 660 ASEGFVKEAQEMLTEL 675



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 170/390 (43%), Gaps = 9/390 (2%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  ++   C+   ++ A +L   +     P+   +  ++   C  G++ +A  VL +M  
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 187

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  P   +Y+ +L    + G    A  +L+++  +GC  +  +  +++ A+C    ++E
Sbjct: 188 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 247

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A     ++   GCE DVV+Y  ++ G C +++     E+++ M++    PN +T+  ++ 
Sbjct: 248 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLIS 307

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              +    E   E++ +M + GC PD+  Y  +I   CK G L+ A  + N M +  L P
Sbjct: 308 YLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKP 367

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAK 510
               +  ++ G        E  E   EM  +     P    T   L++   +   V+   
Sbjct: 368 NVVCYNTLLKGLCSAERWEETEELLAEMFDK---DCPLDDVTFNILVDFFCQNGLVDRVI 424

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++   ++  GC  +V  +T  I+     G + EA      M      P   ++  +++GL
Sbjct: 425 ELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 484

Query: 571 KKLYNRQIAAE--ITEKVRKMAAERQITFK 598
                R + AE  +++ +++      ITF 
Sbjct: 485 CS-AERWVDAEDLMSQMIQQGCPLNPITFN 513


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 131/545 (24%), Positives = 243/545 (44%), Gaps = 50/545 (9%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           +E AL+     L P +   +I    ++  LG+R+++WASK    + S+  +  +I  L K
Sbjct: 46  IEPALESKVPFLSPSIVTYIIKNPPNSL-LGFRFFIWASKFRR-LRSWVSHNMIIDMLIK 103

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
              F   W +++E+++     I+ + F +L++ +A   M++KA+E  + M  + C+PD F
Sbjct: 104 DNGFELYWQVLKEIKRCGFS-ISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVF 162

Query: 211 -----------------------------------VFGCLLDALCKNSSVKEAAKLFDEM 235
                                               F  L+D +CK+   + A ++FDEM
Sbjct: 163 TYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEM 222

Query: 236 RE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            + R  P+   +T ++ G C+  K   A  + + MKD G  PD V YN LL G+ ++G++
Sbjct: 223 TQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRV 282

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A  LLK   +     +   Y+ LI  L R  + E+A   + +M     + DV+ YT +
Sbjct: 283 DEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIM 342

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G  K+ K      +L+ M +RG++P+   Y  ++  +     L+E   L  E+ K  C
Sbjct: 343 MKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDC 402

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
                 Y ++I   C+ G + +A  ++NEME     P   +F  ++ GF   G + +A  
Sbjct: 403 FSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQL 462

Query: 475 YFKEM-VGR----------GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
            F +M +GR          G        +L+ ++  L  +  +  A ++   +   G   
Sbjct: 463 LFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAP 522

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           N+  + I IH     G++  A     ++    + P   T+  L+ GL      + A  + 
Sbjct: 523 NIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVL 582

Query: 584 EKVRK 588
           +++ K
Sbjct: 583 DQILK 587



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 188/399 (47%), Gaps = 19/399 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALIK    +       +L  E+ K      +   + IL+     + +V  A ++ +EM
Sbjct: 374 YNALIKGYCDLGLLDEAKSLHLEISKNDC-FSSACTYTILICGMCRSGLVGDAQQIFNEM 432

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL--------------RHF 246
            K+GC P    F  L+D  CK  ++++A  LF +M     PSL                 
Sbjct: 433 EKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASL 492

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +++   C  G +++A  +L+Q+ D+GF P+I+ YN L+ G+ + G +  AF+L KE++ 
Sbjct: 493 QTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQL 552

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG  P++ +Y  LI  L    + E+A     ++ ++GC      Y + ++  C+  KI  
Sbjct: 553 KGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITL 612

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            + +    + R I       L  +  + +K E+EE V  + EM        ++ Y + + 
Sbjct: 613 AFSLWLKYL-RSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLI 671

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C+ G L+EA+ ++  +E  ++     S V +++  L  G L  A E F   + +G + 
Sbjct: 672 GLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVGNLDLAAEIFLYTIDKGYML 731

Query: 487 APQYGTLKALLNSLLRAQ-KVEMAKDVWSCIVTKGCELN 524
            P+      LL SLLR++ K   A D+ S + + G +L+
Sbjct: 732 MPR--ICNRLLKSLLRSEDKRNRAFDLLSRMKSLGYDLD 768


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 142/546 (26%), Positives = 249/546 (45%), Gaps = 37/546 (6%)

Query: 47  CLKTK--EDDCKCNNT-------TDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQH 97
           CL T+    D K NNT         T+ + N  + D   I +++ K H    KL+  ++ 
Sbjct: 13  CLSTRFPSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQH--WSKLKTIVKE 70

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           +       L + + N      +L   Y+ W  K+   +H+ + +  L+  L+  + +  +
Sbjct: 71  TN---PSSLLQHLFNSEAQP-DLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKI 126

Query: 158 WALMEEMRKEKPQLITT---------------EVFV-ILMRRFASARMVKKAIEVLDEMP 201
            AL++   K      +T                + V +L+  +     +  A+E  D   
Sbjct: 127 RALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAG 186

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLV 260
            YG          +L +L K   +     ++ EM R R   ++  F  ++ G CK GK  
Sbjct: 187 DYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQ 246

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           +A  V+  MK  GF P ++ YN ++ GY + GKM  A  LLKEM  K   PN  ++ +LI
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              CR E +  A + F EM+R G + +VVTY +LI+G C + K+D    + D M   G+ 
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN +TY  ++    KK+ L+E  E++ ++ K G  P+V  +N +I    K G + +A  +
Sbjct: 367 PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLL 426

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            + M    + P   ++  ++ GF  +G + EA +  KEM G GL       T   L+++L
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL--KADLVTYNILVDAL 484

Query: 501 LRAQKVEMAK---DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
            +  +   A    D  + +  KG   N+  + + I    + G ++EA     +M++  ++
Sbjct: 485 CKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLI 544

Query: 558 PQPDTF 563
           P   T+
Sbjct: 545 PNRTTY 550



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 173/331 (52%), Gaps = 12/331 (3%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKK 192
           V ++DV   +I  L K+ KF     ++E+M+     P +IT   +  ++  +  A  + K
Sbjct: 229 VVTFDV---VINGLCKVGKFQKAGDVVEDMKAWGFSPSVIT---YNTIIDGYCKAGKMFK 282

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
           A  +L EM      P+E  F  L+D  C++ +V  A K+F+EM R+  +P++  + SL+ 
Sbjct: 283 ADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C  GKL EA  +  +M   G +P++V YN L++G+ +   + +A E+L ++ ++G  P
Sbjct: 343 GLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  ++  LI A  +  +M++A      M  +G   +V TY  LI GFC+   +    ++ 
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLA 462

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM---RKIGCVPDVSNYNVVIRLA 428
             M   G+  + +TY  ++ A  KK E  + V L+ EM    K G   ++  YNV+I+  
Sbjct: 463 KEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGF 522

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           C  G+L+EA  + NEM    L P   ++ ++
Sbjct: 523 CNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 125/264 (47%), Gaps = 29/264 (10%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y +LI  L    K      L ++M     KP ++T   +  L+  F   +
Sbjct: 331 QPNVV----TYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVT---YNALINGFCKKK 383

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           M+K+A E+LD++ K G  P+   F  L+DA  K   + +A  L   M +    P++  + 
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYN 443

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM--- 304
            L+ G+C+EG + EA+ +  +M+  G + D+V YN L+    + G+   A  LL EM   
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLM 503

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            +KG   N  +Y VLI+  C   K+EEANR   EM   G   +  TY  L          
Sbjct: 504 EKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL---------- 553

Query: 365 DRCYEILDSMIQRGILPNQLTYLH 388
                  D M+++G +P+   +L+
Sbjct: 554 ------RDEMMEKGFIPDIDGHLY 571


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 221/452 (48%), Gaps = 20/452 (4%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           ++ S  K  +F     ++ EM K    P ++T  V +    RF +   V  AI ++D M 
Sbjct: 163 MVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDA--RFRAGD-VDAAIALVDSMA 219

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260
             G +P    F  +L  LCK+    +A ++F  M +    P +R F  L+ G+C+ G++ 
Sbjct: 220 NKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVE 279

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA     +M+  G  PD+V ++ L+  ++  GKM  A   L+EM+  G  P+   YT++I
Sbjct: 280 EAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVI 339

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              CR   M EA R   EM   GC  DVVTY TL++G CK  ++    E+L+ M +RG+ 
Sbjct: 340 GGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVT 399

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+  T+  ++  + +    E+ ++L   +      PDV  YN +I   C+ G+L +A  +
Sbjct: 400 PDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANEL 459

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           W++M A  + P   ++ +++     +G + EA  +  EMV +G L  P   T  +++   
Sbjct: 460 WDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNL--PNIMTYNSIIKGY 517

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY----CLDMMDADV 556
            R+  V+  +     ++      ++  +   IH     G++KE   +      ++M+ + 
Sbjct: 518 CRSGNVKKGQQFLQKMMQDNILPDLITFNTLIH-----GYIKEENMHGAFNVFNIMEKE- 571

Query: 557 MPQPD--TFAKLMRGLKKLYNRQIAAEITEKV 586
           M QPD  T+  ++ G  +  N + A  + +K+
Sbjct: 572 MVQPDAVTYNMIINGFSEQGNMEEAGRVFKKM 603



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 199/427 (46%), Gaps = 16/427 (3%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            + +++K L K R+F     +   M +    P + +   F IL+  F     V++A++  
Sbjct: 229 TFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRS---FNILIGGFCRVGEVEEAMKFY 285

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
            EM + G  PD   F CL+        +  AA    EM+     P    +T ++ G+C+ 
Sbjct: 286 KEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRA 345

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G + EA  V  +M   G  PD+V YN LL+G  +  ++ DA ELL EM+ +G  P+  ++
Sbjct: 346 GSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTF 405

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI   CR    E+A + F  +       DVV Y +LI G C+   + +  E+ D M  
Sbjct: 406 TTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHA 465

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           R I PN +TY  ++ +H +K ++EE    + EM   G +P++  YN +I+  C+ G +K+
Sbjct: 466 REIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKK 525

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF----KEMVGRGLLSAPQYGT 492
                 +M   ++ P   +F  ++HG++ +  +  A   F    KEMV       P   T
Sbjct: 526 GQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMV------QPDAVT 579

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              ++N       +E A  V+  +   G E + Y +   I+   + G+ KEA     +MM
Sbjct: 580 YNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMM 639

Query: 553 DADVMPQ 559
                P 
Sbjct: 640 HRGFAPD 646



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 201/423 (47%), Gaps = 4/423 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I++  +  +    KA  V+ EM K    PD      L+DA  +   V  A  L D M  +
Sbjct: 162 IMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANK 221

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             KP +  F S+L G CK  +  +AK V   M      PD+  +N L+ G+ ++G++ +A
Sbjct: 222 GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEA 281

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +  KEM+++G  P+  S++ LI       KM+ A     EM+  G   D V YT +I G
Sbjct: 282 MKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           FC++  +     + D M+  G LP+ +TY  ++    K+  L +  EL+ EM++ G  PD
Sbjct: 342 FCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPD 401

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  +  +I   C+ G  ++A+ +++ +    L P   ++  ++ G   +G L +A E + 
Sbjct: 402 LCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWD 461

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           +M  R +   P + T   L++S     +VE A      +V+KG   N+  +   I     
Sbjct: 462 DMHAREIF--PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCR 519

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK-MAAERQIT 596
           +G+VK+   +   MM  +++P   TF  L+ G  K  N   A  +   + K M     +T
Sbjct: 520 SGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVT 579

Query: 597 FKM 599
           + M
Sbjct: 580 YNM 582



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 4/262 (1%)

Query: 310 DPNANSYT--VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           D   N+YT  +++ + C+  + ++A+    EME+     DVVT+  LI    ++  +D  
Sbjct: 152 DSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             ++DSM  +G+ P  +T+  ++    K    ++  E+   M +    PDV ++N++I  
Sbjct: 212 IALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGG 271

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++GE++EA+  + EM+   ++P   SF  ++  F  +G +  A  Y +EM G GL+  
Sbjct: 272 FCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLV-- 329

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P       ++    RA  +  A  V   +V  GC  +V  +   ++ L     + +A   
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEEL 389

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
             +M +  V P   TF  L+ G
Sbjct: 390 LNEMKERGVTPDLCTFTTLIHG 411



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 144/321 (44%), Gaps = 6/321 (1%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P   V++ L+  Y Q  K  +AFE  + +        A++   L+ AL R      A  A
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEA 144

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           +  +  S  E +  T   ++  +CKS + D+   ++  M +R + P+ +T+  ++ A  +
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFR 204

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +++  + L+  M   G  P +  +N V++  CK     +A  V+  M+  S++P   S
Sbjct: 205 AGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRS 264

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           F +++ GF   G + EA +++KEM  RG+   P   +   L+       K++ A      
Sbjct: 265 FNILIGGFCRVGEVEEAMKFYKEMQQRGV--TPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +   G   +   +T+ I      G + EA     +M+    +P   T+  L+ GL K + 
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHR 382

Query: 576 RQIAAEITEKVRKMAAERQIT 596
              A E+  +++    ER +T
Sbjct: 383 LLDAEELLNEMK----ERGVT 399


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 226/486 (46%), Gaps = 29/486 (5%)

Query: 120 LGYRYYMWASKQ---PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITT 174
           +G R++    +    PN V     Y  +I    K+++    +  +  M  +  +P LIT 
Sbjct: 1   MGLRFFKEMERNGCLPNVV----TYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLIT- 55

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
             F +++        +K+  EVL EM + G  PDE  +  L++  CK  +  +A  L  E
Sbjct: 56  --FNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAE 113

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M R    P++  +TSL+   CK G L  A     QM   G  P+   Y  +++G+AQ G 
Sbjct: 114 MVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGL 173

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A+ +L EM R G  P+  +Y  LI   C + +MEEA     +M   G   DVV+Y+T
Sbjct: 174 LDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYST 233

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +ISGF +++++DR +++   MI + +LP+ +TY  ++    ++  L E  ++  EM  I 
Sbjct: 234 IISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIK 293

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD   Y  +I   CK G+L +A+++ +EM      P   ++ V+++G   Q    EA 
Sbjct: 294 LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEAR 353

Query: 474 E-YFKEMVGRGLLSAPQYGTL------------KALLNSLLRAQKVEMAKDVWSCIVTKG 520
               K      + SA  Y TL             AL+        ++ A  V+  ++ K 
Sbjct: 354 RLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKN 413

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
            + N   + + IH     G+V +A     +M+  D +P   T   L   +K L+   +  
Sbjct: 414 HKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLAL---VKALFTEGMDG 470

Query: 581 EITEKV 586
           E+ E +
Sbjct: 471 ELNEVI 476



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 21/263 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L + R+      + +EM   K  P   T   +  L+  +     + KA+ + D
Sbjct: 266 YSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFT---YTTLINAYCKEGDLNKALHLHD 322

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS--------------- 242
           EM + G  PD   +  L++ L K +  KEA +L  ++  +   PS               
Sbjct: 323 EMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIE 382

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            +   +L+ G+C +G + EA  V   M +   +P+  +YN ++ G+ ++G +  A++L K
Sbjct: 383 FKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYK 442

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM      P+  +   L++AL       E N    ++ RS    D      L+    K  
Sbjct: 443 EMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEG 502

Query: 363 KIDRCYEILDSMIQRGILPNQLT 385
            +D  + +L  M + G++P+  T
Sbjct: 503 NMDMVFNLLTEMAKDGLIPSTGT 525


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 214/428 (50%), Gaps = 26/428 (6%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           + + L   L ++++ R  D        + WA  +  Y HS + Y  ++  + KM++   +
Sbjct: 45  NSIHLSHELVDKLLFRFKDDWKSALGVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQM 104

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
             L+EEM  EK Q +T +     MRRFA AR  +  + V D++  +G E +      LLD
Sbjct: 105 EFLLEEM--EKGQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLD 162

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   V+ A ++F +++    P+   F   ++GWCK  ++ EA + + +MK  G  P 
Sbjct: 163 TLCKERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPC 222

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y+ ++  Y      +  +ELL EM  +G  PN  +YT ++ AL + E+ EEA +   
Sbjct: 223 VISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQ 282

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTY--LHIMLAHE 394
            M+  GC+ D + Y +LI    K+ + +   ++ +  M   G+ PN  TY  +  ML H 
Sbjct: 283 RMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHH 342

Query: 395 KKEELEECVELMGEMR-KIGCVPDVSNYNVVIRLACKLGELKEAVN-VWNEM-EAASLSP 451
            +E   + + L+ E+   I C PDV  Y  +++   K G +   ++ + ++M +   LS 
Sbjct: 343 SQE--RKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSL 400

Query: 452 GTDSFVVMVHGFLGQGCLIEACEY----FKEMVGRGLLSAPQYGTLKALLNSLL------ 501
              ++ ++VHG     C    CE+    F+EM+G+ +   P+Y T + LL+ +       
Sbjct: 401 DFSAYTLLVHGL----CRANKCEWAYCLFEEMIGKDM--TPKYQTCRLLLDEVKLKHMYD 454

Query: 502 RAQKVEMA 509
            AQK+E+ 
Sbjct: 455 AAQKIEIV 462



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 153/318 (48%), Gaps = 11/318 (3%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G E +    N LL    +  K+  A E+  +++     PNAN++ + I   C++ ++EEA
Sbjct: 149 GLEKNTESMNLLLDTLCKERKVELAREIFLDLKSH-ISPNANTFNIFIHGWCKVNRVEEA 207

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                EM+  GC   V++Y+T++  +C      + YE+LD M  +G++PN +TY  +M A
Sbjct: 208 YWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSA 267

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN-EMEAASLSP 451
             K EE EE +++   M+ +GC PD   YN +I    K G  +EA+ V+  EM    + P
Sbjct: 268 LAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPP 327

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE--MA 509
            T ++  M+          +A    KE +   ++  P   T   LL S  +A  ++  ++
Sbjct: 328 NTSTYNSMIAMLCHHSQERKALNLLKE-IEASIICKPDVQTYYPLLKSCFKAGSIDSLLS 386

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL--DMMDADVMPQPDTFAKLM 567
           + +   +      L+  A+T+ +H L      + A  YCL  +M+  D+ P+  T   L+
Sbjct: 387 QLLDDMVKKHHLSLDFSAYTLLVHGLCRANKCEWA--YCLFEEMIGKDMTPKYQTCRLLL 444

Query: 568 R--GLKKLYNRQIAAEIT 583
               LK +Y+     EI 
Sbjct: 445 DEVKLKHMYDAAQKIEIV 462



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/378 (19%), Positives = 148/378 (39%), Gaps = 57/378 (15%)

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
           I+V+    + G   DE V   + D +C  +S+  + +L D++  RFK   +    + + W
Sbjct: 18  IDVIVAKIRVGSSHDEIVQSLVHDEVC--NSIHLSHELVDKLLFRFKDDWKSALGV-FRW 74

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            +                AG++     Y+ ++    +M +M D  E L E   KG     
Sbjct: 75  AE--------------SRAGYKHSPEAYDTMVDIMGKMKQM-DQMEFLLEEMEKGQHVTL 119

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +    ++      + E   R F ++   G E +  +   L+   CK RK++   EI   
Sbjct: 120 KTVGKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCKERKVELAREIFLD 179

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           +                                    K    P+ + +N+ I   CK+  
Sbjct: 180 L------------------------------------KSHISPNANTFNIFIHGWCKVNR 203

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           ++EA     EM+    +P   S+  +V  +  +    +  E   EM  +GL+  P   T 
Sbjct: 204 VEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLI--PNVVTY 261

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS-YCLDMM 552
            +++++L ++++ E A  +   + + GC+ +   +   IH+L   G  +EA   + ++M 
Sbjct: 262 TSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMP 321

Query: 553 DADVMPQPDTFAKLMRGL 570
           +  V P   T+  ++  L
Sbjct: 322 NTGVPPNTSTYNSMIAML 339


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 235/505 (46%), Gaps = 18/505 (3%)

Query: 78  FRILKKFHSRLPKLELALQHSGVVLRPG--LTERVINR-----CGDAGNLGYRYYMWASK 130
           + I+     R+ +LEL     G++L+ G  + + V+N+     C D   +G   ++   +
Sbjct: 87  YSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLC-DTKRVGEAMHVLLRQ 145

Query: 131 QPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFAS 186
            P       V  Y  L+K L   R+      L+  M   +    + +V  + I++  F +
Sbjct: 146 MPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFN 205

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
              V KA  +  EM   G  PD   +  ++D LCK   V  A  +F +M E+  KP+   
Sbjct: 206 EGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVT 262

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G CK  ++  A+ V  +M D G +P  V YN ++ G  +   +  A  + ++M 
Sbjct: 263 YNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI 322

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  P+  +Y  +I  LC+ + +++A   F +M   G + D +TYT +I G CK++ +D
Sbjct: 323 DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVD 382

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           R   +   MI +G+ PN  TY  ++  +    + EE V+ + EM      PDV  Y +++
Sbjct: 383 RAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLL 442

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK G+  EA ++++ M    + P    + +M+HG+  +G L E  +    MV  G+ 
Sbjct: 443 DYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGI- 501

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            +P +     ++ +  +   ++    ++  +  +G   NV  +   I +L   G V +A 
Sbjct: 502 -SPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAV 560

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGL 570
                M++  V P    F  L+ GL
Sbjct: 561 LQFNQMINEGVTPNNVVFNSLVYGL 585



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 202/443 (45%), Gaps = 45/443 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K +       + ++M  +  KP       +  L+  + S    ++ ++ + 
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPN---NGTYNCLIHGYLSTGQWEEVVQRIK 424

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM  +  EPD F +G LLD LCKN    EA  LFD M R+  KPS+  +  +L+G+ K+G
Sbjct: 425 EMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKG 484

Query: 258 KLVE-----------------------------------AKYVLVQMKDAGFEPDIVVYN 282
            L E                                     ++ ++MK  G  P++V Y 
Sbjct: 485 ALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYG 544

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+    ++G++ DA     +M  +G  PN   +  L+  LC ++K E+    F+EM   
Sbjct: 545 TLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQ 604

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D+V + T++   CK  ++     ++DSM+  G+ P+ ++Y  ++  H     ++E 
Sbjct: 605 GIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEA 664

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           V+L+  M   G  P++ +YN ++   CK G +  A  ++ EM    ++PG +++  +++G
Sbjct: 665 VKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNG 724

Query: 463 FLGQGCLIEACEYFKEMV-GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               G   EA E +  M+  R L S   Y     +L+   +    + A  ++  + +   
Sbjct: 725 LFRSGRFSEARELYVNMIKSRKLWSICTYSI---ILDGFCKNNCFDEAFKIFQSLCSMDL 781

Query: 522 ELNVYAWTIWIHSLFSNGHVKEA 544
           +L++  + I I  LF  G  ++A
Sbjct: 782 QLDIITFNIMIDGLFKGGRKEDA 804



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 205/470 (43%), Gaps = 43/470 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K +       + ++M  R  KP  +T   +  ++     A+ + KA  V  
Sbjct: 298 YNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVT---YNTIIDGLCKAQAIDKAEGVFQ 354

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW---- 253
           +M   G +PD   +  ++D LCK  SV  A  +F +M ++  KP+   +  L++G+    
Sbjct: 355 QMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTG 414

Query: 254 -------------------------------CKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                                          CK GK  EA+ +   M   G +P + +Y 
Sbjct: 415 QWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYG 474

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L GY + G +++  +LL  M   G  PN   +  +I A  +   ++E    F++M++ 
Sbjct: 475 IMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQ 534

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   +VVTY TLI   CK  ++D      + MI  G+ PN + +  ++      ++ E+ 
Sbjct: 535 GLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV 594

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            EL  EM   G  PD+  +N V+   CK G + EA  + + M    L P   S+  ++ G
Sbjct: 595 EELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG 654

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                 + EA +    MV  GL   P   +   LL+   +A +++ A  ++  ++ KG  
Sbjct: 655 HCFASRMDEAVKLLDGMVSAGL--KPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVT 712

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             V  +   ++ LF +G   EA    ++M+ +  +    T++ ++ G  K
Sbjct: 713 PGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCK 762



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 163/351 (46%), Gaps = 10/351 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y  LI +L K+ +         +M  E   P  +   VF  L+    +   
Sbjct: 538 PNVV----TYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNV---VFNSLVYGLCTVDK 590

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTS 248
            +K  E+  EM   G  PD   F  +L  LCK   V EA +L D M     KP +  + +
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNT 650

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G C   ++ EA  +L  M  AG +P+IV YN LL GY + G++ +A+ L +EM RKG
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P   +Y  ++  L R  +  EA   +V M +S     + TY+ ++ GFCK+   D  +
Sbjct: 711 VTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAF 770

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +I  S+    +  + +T+  ++    K    E+ ++L   +   G VP V  Y ++    
Sbjct: 771 KIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENL 830

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            + G L+E   +++ ME +  +P +     ++   L +G +  A  Y  ++
Sbjct: 831 IEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKL 881



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 189/404 (46%), Gaps = 9/404 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           ++ ++  +I + +K      V  +  +M+++   P ++T   +  L+        V  A+
Sbjct: 504 NHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVT---YGTLIDALCKLGRVDDAV 560

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
              ++M   G  P+  VF  L+  LC     ++  +LF EM  +  +P +  F ++L   
Sbjct: 561 LQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNL 620

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CKEG+++EA+ ++  M   G +PD++ YN L+ G+    +M +A +LL  M   G  PN 
Sbjct: 621 CKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNI 680

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            SY  L+   C+  +++ A   F EM R G    V TY T+++G  +S +     E+  +
Sbjct: 681 VSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVN 740

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           MI+   L +  TY  I+    K    +E  ++   +  +    D+  +N++I    K G 
Sbjct: 741 MIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGR 800

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            ++A++++  + A  L P   ++ ++    + +G L E    F  M   G  +AP    L
Sbjct: 801 KEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSG--TAPNSHML 858

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            AL+  LL   ++  A    S +  K   L     ++ I SLFS
Sbjct: 859 NALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLI-SLFS 901



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 152/359 (42%), Gaps = 45/359 (12%)

Query: 222 NSSVKEAAKLFDEMRERFKP-SLRHFTSLLY----GWCKEGKLVEAKYVLVQMKDAG--F 274
           N  + +A KLFDE+    +P S+R    LL       C     +        ++D     
Sbjct: 21  NLGLHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKV 80

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD   Y+ ++  + ++G++   F     + + G   +      L++ LC  +++ EA  
Sbjct: 81  APDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMH 140

Query: 335 AFV-EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             + +M   GC   VV+Y TL+ G C  R+                              
Sbjct: 141 VLLRQMPEVGCRLGVVSYNTLLKGLCDRRR------------------------------ 170

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
              EE  E + +M + +   C PDV +YN+VI      G++ +A +++ EM    +SP  
Sbjct: 171 --AEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDV 225

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  ++ G      +  A + F++MV +G+   P   T   +++ L +AQ+V+MA+ V+
Sbjct: 226 VTYNTIIDGLCKAQEVDRAEDVFQQMVEKGV--KPNNVTYNTIIDGLCKAQEVDMAEGVF 283

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +V KG + +   +   I  L     V  A      M+D  V P   T+  ++ GL K
Sbjct: 284 QKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 6/234 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A  +PN V     Y  L+    K  +    + L  EM ++           IL   F S 
Sbjct: 674 AGLKPNIVS----YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSG 729

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHF 246
           R   +A E+   M K         +  +LD  CKN+   EA K+F  +     +  +  F
Sbjct: 730 RF-SEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITF 788

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             ++ G  K G+  +A  +   +   G  P +V Y  +     + G + +   L   M +
Sbjct: 789 NIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEK 848

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            G  PN++    LI+ L    ++  A     +++      +  T + LIS F +
Sbjct: 849 SGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSR 902



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 2/195 (1%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + Y  ++  L +  +F     L   M K + +L +   + I++  F       +A ++  
Sbjct: 716 ETYNTILNGLFRSGRFSEARELYVNMIKSR-KLWSICTYSIILDGFCKNNCFDEAFKIFQ 774

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +     + D   F  ++D L K    ++A  LF  +      PS+  +  +     +EG
Sbjct: 775 SLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEG 834

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L E   +   M+ +G  P+  + N L+      G++  A   L ++  K     A++ +
Sbjct: 835 SLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTS 894

Query: 318 VLIQALCRMEKMEEA 332
           +LI    R E  + A
Sbjct: 895 MLISLFSREEYQQHA 909


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 150/590 (25%), Positives = 248/590 (42%), Gaps = 78/590 (13%)

Query: 53  DDCKCNNTTDTHGSHNEFSHDV-EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVI 111
           +D +  N        +EF H V  ++ R++    +  P  E  L+H    L+P L   V+
Sbjct: 111 NDKQTQNIASIEIDDSEFRHPVVREVCRLITLSSAWNPNFEGRLRHLLRSLKPSLVCAVL 170

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL 171
               D   +   ++ WA +Q  Y H   VY  L+  LSK +       ++  M +   +L
Sbjct: 171 RSQADE-RVALNFFYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRLMTRRGIEL 229

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
            + E F  +M  ++ A  ++ A+ VL  M K G EP+  +    +  L K   +++A + 
Sbjct: 230 -SPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRF 288

Query: 232 FDEMR-ERFKPSLRHFTSLLYGW-----------------------------------CK 255
            + M+    KP +  + SL+ G+                                   CK
Sbjct: 289 LERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCK 348

Query: 256 EGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           E K+ + K ++ +M +D+   PD V YN L+   ++ G   DA   LKE   KG   +  
Sbjct: 349 EKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKV 408

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            Y+ ++ + C+  +M+EA    ++M    C  DVVTYT ++ GFC+  +ID   ++L  M
Sbjct: 409 GYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQM 468

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            + G  PN ++                                   Y  ++   C  G+ 
Sbjct: 469 YKHGCKPNTVS-----------------------------------YTALLNGLCHSGKS 493

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  + N  E    +P   ++ V++HGF  +G L EAC+  +EMV +G    P    + 
Sbjct: 494 LEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPV--EIN 551

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+ SL + QKV  AK      + KGC +NV  +T  IH     G ++ A S   DM  +
Sbjct: 552 LLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLS 611

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFKMYKRR 603
           +  P   T+  L   L K      AAE I + + K      +TF+    R
Sbjct: 612 NKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHR 661



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 191/404 (47%), Gaps = 51/404 (12%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T   +  L++ +     ++ A+E++  +P  GC PD+  +  ++  LCK   +++
Sbjct: 298 KPDIVT---YNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQ 354

Query: 228 AAKLFDEMRE--RFKP------SLRH-----------------------------FTSLL 250
              L ++M +     P      +L H                             +++++
Sbjct: 355 VKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIV 414

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           + +C++G++ EAK +++ M      PD+V Y  ++ G+ ++G++ +A ++L++M + GC 
Sbjct: 415 HSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCK 474

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  SYT L+  LC   K  EA       E      + +TY  ++ GF +  K+    ++
Sbjct: 475 PNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDL 534

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M+++G  P  +    ++ +  + +++ E  + + E    GC  +V N+  VI   C+
Sbjct: 535 TREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQ 594

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-- 488
           +G+++ A++V  +M  ++  P   ++  +      +G L EA E   +M+ +GL   P  
Sbjct: 595 IGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVT 654

Query: 489 ---------QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                    Q+G +  +LN L R  K +  + +++ ++ K C+ 
Sbjct: 655 FRSVIHRYCQWGRVDDMLNLLDRMVKRKPFRTIYNHVIEKLCDF 698



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 166/380 (43%), Gaps = 39/380 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++ S  +  +     +L+ +M  R   P ++T   +  ++  F     + +A ++L 
Sbjct: 410 YSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVT---YTAIVDGFCRLGRIDEAKKMLQ 466

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M K+GC+P+   +  LL+ LC +    EA ++ +   E +  P+   +  +++G+ +EG
Sbjct: 467 QMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREG 526

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL EA  +  +M + GF P  V  N L+    Q  K+ +A + L+E   KGC  N  ++T
Sbjct: 527 KLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFT 586

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I   C++  ME A     +M  S    D VTYT L     K  ++D   E++  M+ +
Sbjct: 587 TVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSK 646

Query: 378 GILPNQLT---------------------------------YLHIMLAHEKKEELEECVE 404
           G+ P  +T                                 Y H++        LEE  +
Sbjct: 647 GLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRKPFRTIYNHVIEKLCDFGNLEEAEK 706

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+G++ +     D +  +V++    K G    A  V  +M   +L+P       +    +
Sbjct: 707 LLGKVLRTASKLDANTCHVLMESCLKKGVALSAYKVACQMFRRNLTPDLKLCEKVTKKLV 766

Query: 465 GQGCLIEACEYFKEMVGRGL 484
             G L+EA +     V RG+
Sbjct: 767 LDGNLVEADKLMLRFVERGI 786


>gi|15232517|ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15200
 gi|11994509|dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642110|gb|AEE75631.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 212/430 (49%), Gaps = 12/430 (2%)

Query: 68  NEFSHDVEK-----IFRILKKFHSRLP-KLELALQHSGVVLRPGLTERVINRCGDAGNLG 121
           N F+ D +K     +  I+K      P K++  L   G+ L   L   V+NR        
Sbjct: 67  NRFNDDKDKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPA 126

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           Y       KQ  ++ S  +Y  ++  L KMR+F     + +EM K +   +  + + +L+
Sbjct: 127 YILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSK-RDGFVNEKTYEVLL 185

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP 241
            R+A+A  V +A+ V +   ++G + D   F  LL  LC+   V+ A  LF   R  F  
Sbjct: 186 NRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGC 245

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
            ++    +L GWC  G + EAK     +  +   PD+V Y  +++   + GK+  A EL 
Sbjct: 246 DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELY 305

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           + M     +P+      +I ALC  +++ EA   F E+   G + +VVTY +L+   CK 
Sbjct: 306 RAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKI 365

Query: 362 RKIDRCYEILDSMIQRG--ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           R+ ++ +E+++ M  +G    PN +T+ +++   ++ ++++  +E M    K  C     
Sbjct: 366 RRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMA---KNKCEMTSD 422

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN++ RL  +  + ++   +W+EME + L P   ++ + +HG   +G + EA  YF+EM
Sbjct: 423 LYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEM 482

Query: 480 VGRGLLSAPQ 489
           + +G++  P+
Sbjct: 483 MSKGMVPEPR 492



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 168/358 (46%), Gaps = 15/358 (4%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
           ++  +LD L K    +E  ++FDEM +R    + + +  LL  +    K+ EA  V  + 
Sbjct: 145 LYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFERR 204

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEK 328
           K+ G + D+V ++ LL    +   +  A  L    RR+ GCD  A    +++   C +  
Sbjct: 205 KEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKA--MNMILNGWCVLGN 262

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           + EA R + ++  S C  DVV+Y T+I+   K  K+ +  E+  +M      P+     +
Sbjct: 263 VHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNN 322

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME--A 446
           ++ A   K+ + E +E+  E+ + G  P+V  YN +++  CK+   ++   +  EME   
Sbjct: 323 VIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKG 382

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL--LSAPQYGTLKALLNSLLRAQ 504
            S SP   +F  +    L      +  +   E + +    +++  Y  +  L    ++  
Sbjct: 383 GSCSPNDVTFSYL----LKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLY---VQWD 435

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           K E  +++WS +   G   +   +TI IH L + G + EA SY  +MM   ++P+P T
Sbjct: 436 KEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRT 493



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 13/232 (5%)

Query: 141 YRALIKSLSKMRKFGAVWAL---MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  +I +L+K  K G    L   M + R+     I   V   L       + + +A+EV 
Sbjct: 285 YGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDAL----CFKKRIPEALEVF 340

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF---KPSLRHFTSLLYGWC 254
            E+ + G +P+   +  LL  LCK    ++  +L +EM  +     P+   F+ LL  + 
Sbjct: 341 REISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLL-KYS 399

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           +  K V+   VL +M     E    +YN +   Y Q  K     E+  EM R G  P+  
Sbjct: 400 QRSKDVDI--VLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQR 457

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +YT+ I  L    K+ EA   F EM   G   +  T   L     K R  D+
Sbjct: 458 TYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQNKTKPRVEDK 509



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 56/199 (28%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V     Y +L+K L K+R+   VW L+EEM                          
Sbjct: 349 DPNVV----TYNSLLKHLCKIRRTEKVWELVEEM-------------------------- 378

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
                   E+    C P++  F  LL          + +K  D + ER   +    TS L
Sbjct: 379 --------ELKGGSCSPNDVTFSYLL-------KYSQRSKDVDIVLERMAKNKCEMTSDL 423

Query: 251 YG--------WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           Y         W KE K+ E   +  +M+ +G  PD   Y   + G    GK+ +A    +
Sbjct: 424 YNLMFRLYVQWDKEEKVRE---IWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQ 480

Query: 303 EMRRKGCDPNANSYTVLIQ 321
           EM  KG  P   +  +L Q
Sbjct: 481 EMMSKGMVPEPRTEMLLNQ 499


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 212/448 (47%), Gaps = 7/448 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           Y  +IK+  K+        ++ EM KE KP L T   F+           V +A+EV   
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFI---GGLCQTGAVDEALEVKKL 301

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G  PD   +  L+D  CK    KEA  +F+ M      P+   +T+L+ G+ KEG 
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +  +M   G + ++V YN ++ G A+ G+M  A  L  EM   G +P+  +Y +
Sbjct: 362 IEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNL 421

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI    +   M +A     EM+         TY+ LISG C S  + +  E+LD MI+ G
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNG 481

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN   Y  ++ A+ ++   E  +EL+  M   G +PD+  YN +I   C+  +++EA 
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  +M    + P   ++   ++ +   G +  A  YFK+M+  G++  P       L+ 
Sbjct: 542 MLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIV--PNNVIYTILIK 599

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
                     A   + C++ KG   ++ A++  IHSL  NG  KEA    L  +   V+P
Sbjct: 600 GHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVP 659

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               +  L+ G  K  + + A+++ +++
Sbjct: 660 DVFLYNSLISGFCKEGDIEKASQLYDEM 687



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 210/431 (48%), Gaps = 8/431 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A I  L +    GAV   +E  ++  EK        + +L+  F   +  K+A  + +
Sbjct: 279 YNAFIGGLCQT---GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFE 335

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            MP  G  P+ F +  L+D   K  +++EA ++ DEM  R  K ++  + +++ G  K G
Sbjct: 336 SMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAG 395

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A  +  +M  AG EPD   YN L+ GY +   M  A ELL EM+ +   P+  +Y+
Sbjct: 396 EMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYS 455

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VLI  LC    +++AN    +M R+G + +V  Y TLI  + +  + +   E+L  MI  
Sbjct: 456 VLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIAN 515

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LP+   Y  +++   + +++EE   L+ +M + G  P+   Y   I L  K GE++ A
Sbjct: 516 GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVA 575

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              + +M ++ + P    + +++ G    G  +EA   FK M+ +GL+  P      A++
Sbjct: 576 ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLI--PDIRAYSAII 633

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +SL +  K + A  V+   +  G   +V+ +   I      G +++A     +M+   + 
Sbjct: 634 HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGIN 693

Query: 558 PQPDTFAKLMR 568
           P    +  L+ 
Sbjct: 694 PNIVVYNTLIN 704



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 220/472 (46%), Gaps = 38/472 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y A+I  ++K  +     +L  EM     +   T  + +L+  +  +  + KA E+L EM
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGIE-PDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
                 P  F +  L+  LC +S +++A ++ D+M R   KP++  + +L+  + +E + 
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L  M   G  PD+  YN L+ G  +  K+ +A  LL +M  KG  PNA++Y   
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAF 562

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I    +  +++ A R F +M  SG   + V YT LI G C              M+++G+
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+   Y  I+ +  K  + +E + +  +  K G VPDV  YN +I   CK G++++A  
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQ 682

Query: 440 VWNEMEAASLSPGTDSFVVMV--HGFLGQGCLIEACEYFKEMVGRGLLSAPQY------- 490
           +++EM    ++P    +  ++  +G+   G L EA + F EM+ +G+ S   Y       
Sbjct: 683 LYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGI-SPDGYIYCILID 741

Query: 491 -----------------------GTLKA---LLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
                                  G+L A   L++S  +  KV  A++++  +V K    N
Sbjct: 742 GCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPN 801

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
           +  +TI I +      ++EA    LDM   +++P   T+  L+    ++ NR
Sbjct: 802 IVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNR 853



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 185/390 (47%), Gaps = 2/390 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           LMR    A M+    +V   M +    PD + +  ++ A CK   V +   +  EM +  
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKEC 272

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KP+L  + + + G C+ G + EA  V   M + G  PD   Y  L+ G+ +  +  +A  
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           + + M   G +PN  +YT LI    +   +EEA R   EM   G + +VVTY  +I G  
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K+ ++ +   + + M+  GI P+  TY  ++  + K  ++ +  EL+ EM+     P   
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPF 452

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            Y+V+I   C   +L++A  V ++M    + P    +  ++  ++ +     A E  K M
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           +  G+L  P       L+  L RA+KVE AK +   +  KG + N + +  +I+    +G
Sbjct: 513 IANGVL--PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            ++ A  Y  DM+ + ++P    +  L++G
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKG 600



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 219/509 (43%), Gaps = 46/509 (9%)

Query: 123 RYYMWASKQ---PNYVHSYDVY------RALIKSLSKMRKFGAVWALMEEMRKEKPQLIT 173
            ++ W+S +   P Y+HSY +         LI     M        L + ++  KP L  
Sbjct: 105 NFFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNM--------LEKLLQTRKPPLEI 156

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF- 232
            +  V   R F  + +                     VF   +D       + EA+ +F 
Sbjct: 157 LDSLVRCYREFGGSNLT--------------------VFDIFIDKFRVLGFLNEASSVFI 196

Query: 233 DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
             + E F P+L    +L+    K   +     V   M +A   PD+  Y N++  + ++G
Sbjct: 197 ASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVG 256

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
            +     +L EM ++ C PN  +Y   I  LC+   ++EA      M   G   D  TYT
Sbjct: 257 DVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYT 315

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            L+ GFCK ++      I +SM   G+ PN+ TY  ++    K+  +EE + +  EM   
Sbjct: 316 LLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITR 375

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G   +V  YN +I    K GE+ +A++++NEM  A + P T ++ +++ G+L    + +A
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKA 435

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
           CE   EM  R L  +P   T   L++ L  +  ++ A +V   ++  G + NV+ +   I
Sbjct: 436 CELLAEMKARKLTPSPF--TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLI 493

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---KKLYN-RQIAAEITEKVRK 588
            +       + A      M+   V+P    +  L+ GL   KK+   + +  ++ EK  K
Sbjct: 494 KAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553

Query: 589 MAAERQITF-KMYKRRGERDLKEKAKKQV 616
             A     F  +Y + GE  + E+  K +
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVAERYFKDM 582



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 158/312 (50%), Gaps = 4/312 (1%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE- 234
           ++ IL++         +A+     M + G  PD   +  ++ +L KN   KEA  +F + 
Sbjct: 593 IYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKF 652

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS--GYAQMG 292
           ++    P +  + SL+ G+CKEG + +A  +  +M   G  P+IVVYN L++  GY + G
Sbjct: 653 LKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSG 712

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
            +T+AF+L  EM  KG  P+   Y +LI    +   +E+A   F E ++      +  + 
Sbjct: 713 NLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFN 771

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +LI  FCK  K+    E+ D M+ + + PN +TY  ++ A+ K E +EE  +L  +M   
Sbjct: 772 SLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR 831

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
             +P+   Y  ++    ++G   + ++++ +MEA  ++    ++ VM   +  +G  +EA
Sbjct: 832 NIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEA 891

Query: 473 CEYFKEMVGRGL 484
            +   + +  G+
Sbjct: 892 LKLLNKSLVEGI 903



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 140/292 (47%), Gaps = 4/292 (1%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           K+A+ V  +  K G  PD F++  L+   CK   +++A++L+DEM      P++  + +L
Sbjct: 643 KEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 250 L--YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +  YG+CK G L EA  +  +M   G  PD  +Y  L+ G  + G +  A  L  E ++K
Sbjct: 703 INDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK 762

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
               + +++  LI + C+  K+ EA   F +M       ++VTYT LI  + K+  ++  
Sbjct: 763 SVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEA 821

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++   M  R I+PN LTY  ++L++ +     + + L  +M   G   D   Y V+   
Sbjct: 822 EQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASA 881

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            CK G+  EA+ + N+     +    D F  ++     +  +    E   EM
Sbjct: 882 YCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM 933



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 131/276 (47%), Gaps = 7/276 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM--VKKAIE 195
           +Y +LI    K         L +EM      P ++   V+  L+  +   +   + +A +
Sbjct: 663 LYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIV---VYNTLINDYGYCKSGNLTEAFK 719

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255
           + DEM   G  PD +++  L+D   K  ++++A  LF E +++   SL  F SL+  +CK
Sbjct: 720 LFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCK 779

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            GK++EA+ +   M D    P+IV Y  L+  Y +   M +A +L  +M  +   PN  +
Sbjct: 780 HGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLT 839

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           YT L+ +  ++    +    F +ME  G   D + Y  + S +CK  K     ++L+  +
Sbjct: 840 YTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSL 899

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             GI      +  ++    K++++   +EL+ EM K
Sbjct: 900 VEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGK 935



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 6/250 (2%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKE 167
           +I+ CG  GNL     ++   Q   V S   + +LI S  K  K      L ++M  +K 
Sbjct: 739 LIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKL 798

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
            P ++T   + IL+  +  A M+++A ++  +M      P+   +  LL +  +  +  +
Sbjct: 799 TPNIVT---YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFK 855

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
              LF +M  R        +  +   +CKEGK +EA  +L +    G + +  V++ L+ 
Sbjct: 856 MISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIF 915

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              +  +++   ELL EM ++    ++ +   L+    +    +EA++    M+R G   
Sbjct: 916 HLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 975

Query: 347 DVVTYTTLIS 356
             ++ T  IS
Sbjct: 976 TSLSLTDSIS 985


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 209/439 (47%), Gaps = 14/439 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           Y +LI  L K  K    + L++EMR    P  +     VI  +    A     A+     
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI--KGLCKAGRFGDALGYFKT 90

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLLYGWCKEG 257
           +    C PD   F  L+DAL K+  V+EA ++F+ M    +  P++  +T+++ G CK+G
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL  A  +L  M + G  P+++ Y+ L+ G  + G+    F LL+EM R+G  P+   Y 
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYN 210

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC+  +++EA      M RSGC   VVTY +L+  FC+S+++DR + ++  M +R
Sbjct: 211 TLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER 270

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK------L 431
           G  P+ + Y  ++    +   L++   L+ +M    CVPDV  Y+ +I   CK       
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            +L+ A  +   M+     P   ++ V++ G        +A    + M+   ++  P   
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVV--PDLS 388

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           +   ++ SL ++  ++ A  ++  +  + C+ N  A+   I  L   G V +A     ++
Sbjct: 389 SFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV-FEL 447

Query: 552 MDADVMPQPDTFAKLMRGL 570
           M     P   T+  ++ GL
Sbjct: 448 MVESFRPGVATYNSVLDGL 466



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 196/426 (46%), Gaps = 51/426 (11%)

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA- 262
           C P+EF +G L+  LCK   + +A +L DEMR+R   P +     ++ G CK G+  +A 
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDAL 85

Query: 263 ------------------KYVLVQMKDAG--------FE---------PDIVVYNNLLSG 287
                               ++  +  +G        FE         P++V Y  +++G
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVING 145

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             + GK+  A ELL  M   GC PN  +Y+VL++ LC+  + ++      EM R G + D
Sbjct: 146 LCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V+ Y TL++G CKSR++D   E++  MI+ G  P  +TY  +M    + ++++    L+ 
Sbjct: 206 VIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQ 265

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL--- 464
            M + GC PDV NYN VI   C+   L +A  +  +M AA   P   ++  ++ G     
Sbjct: 266 VMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDW 325

Query: 465 ---GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                  L  ACE  + M   G    P  GT   ++  L RA+K + A  +   ++    
Sbjct: 326 RVDADWKLEAACEILEMMKQTG--CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV 383

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             ++ ++++ I SL  +  +  A      M + +  P P  +A L+ GL K        E
Sbjct: 384 VPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSK------GGE 437

Query: 582 ITEKVR 587
           + + VR
Sbjct: 438 VDKAVR 443



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 221/465 (47%), Gaps = 36/465 (7%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVV---LRPGLTERVINRCGDAGNLGYRYYMW 127
           S  VE+ F+I +  H+    L   + ++ V+    + G  +R I         G      
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGC----- 167

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFA 185
               PN +     Y  L++ L K  +    + L++EM  R  +P +I   ++  L+    
Sbjct: 168 ---CPNVI----TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI---MYNTLLNGLC 217

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
            +R + +A+E++  M + GC P    +  L++  C++  V  A +L   M ER   P + 
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVI 277

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG------KMTDAF 298
           ++ +++ G C++ +L +A+ +L QM  A   PD++ Y+ ++ G  +        K+  A 
Sbjct: 278 NYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+L+ M++ GC PNA +Y V+I+ LCR  K ++A      M  S    D+ +++ +I   
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV---ELMGEMRKIGCV 415
           CKS  +D  Y+I   M +R   PN + Y  ++    K  E+++ V   ELM E  +    
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFR---- 453

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P V+ YN V+   C +G ++EAV +   M      P   S+  ++ G     C+ EA E 
Sbjct: 454 PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYEL 513

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           F+ +  +G   A + G    L+N L + +++  A  V + ++  G
Sbjct: 514 FQAVEAKGF--AMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 194/423 (45%), Gaps = 50/423 (11%)

Query: 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           C L+ L +     +A +LF E  ER  P+   + SL++G CK GKL +A  +L +M+D G
Sbjct: 3   CALNLLVRAGQHGQAVQLFRE--ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG 60

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P + V+N ++ G  + G+  DA    K +    C P+  ++ +L+ AL +  ++EEA 
Sbjct: 61  IPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 334 RAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM-- 390
           + F  M  S  C  +VVTYTT+I+G CK  K+DR  E+LD M + G  PN +TY  ++  
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 391 ------------LAHE---------------------KKEELEECVELMGEMRKIGCVPD 417
                       L  E                     K   L+E +EL+  M + GC P 
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN ++ L C+  ++  A  +   M      P   ++  ++ G      L +A    K
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKV------EMAKDVWSCIVTKGCELNVYAWTIW 531
           +MV    +  P   T   +++ L +  +V      E A ++   +   GC  N   + + 
Sbjct: 301 QMVAARCV--PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L      ++A +    M+D++V+P   +F+ ++  L K ++   A     K+  M +
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY----KIFGMMS 414

Query: 592 ERQ 594
           ER+
Sbjct: 415 ERE 417


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 206/467 (44%), Gaps = 41/467 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L+ +++KM KF  V +L E+M+    P       + IL+  F     +  A+ VL +
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPH--NHYTYSILLNCFCRRSQLPLALAVLGK 141

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY------- 251
           M K G EPD      LL+  C    + EA  L D+M E  +KP    F +L++       
Sbjct: 142 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNK 201

Query: 252 ----------------------------GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
                                       G CK G +  A  +L +M+    E ++V+YN 
Sbjct: 202 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNT 261

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           ++ G  +   M DAF+L  +M  KG  P+  +Y  LI  LC   +  +A+R   +M    
Sbjct: 262 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              +VVT+ +LI  F K  K+    ++ D MIQR I PN +TY  ++      + L+E  
Sbjct: 322 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 381

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           ++   M    C+PDV  YN +I+  CK   ++E + ++ EM    L   T ++  ++ G 
Sbjct: 382 QIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 441

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G    A + FK+MV  G+   P   T   LL+ L +  K+E A  V+  +     E 
Sbjct: 442 FQAGDCDMAQKIFKKMVSDGV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 499

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           N+Y + I I  +   G V++       +    V P    +  ++ G 
Sbjct: 500 NIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF 546



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 223/448 (49%), Gaps = 8/448 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +L+      ++     AL+++M +   KP  +T   F  L+          +A+ ++D M
Sbjct: 156 SLLNGYCHGKRISEAVALVDQMVEMGYKPDTVT---FNTLIHGLFLHNKASEAVALIDRM 212

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              GC+PD F +G +++ LCK   +  A  L  +M + + + ++  + +++ G CK   +
Sbjct: 213 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHM 272

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +  +M+  G +PD+  YN+L+S     G+ +DA  LL +M  +  +PN  ++  L
Sbjct: 273 DDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSL 332

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I A  +  K+ EA + F EM +   + ++VTY +LI+GFC   ++D   +I   M+ +  
Sbjct: 333 IDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 392

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           LP+ +TY  ++    K + +EE +EL  EM + G V +   YN +I+   + G+   A  
Sbjct: 393 LPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 452

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ +M +  + P   ++ +++ G    G L +A   F+ +    +   P   T   ++  
Sbjct: 453 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM--EPNIYTYNIMIEG 510

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           + +A KVE   D++  +  KG + NV  +T  I      G  +EA +   +M +   +P 
Sbjct: 511 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPD 570

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVR 587
              +  L+R   +  ++  +AE+ +++R
Sbjct: 571 SGCYNTLIRARLRDGDKAASAELIKEMR 598



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 191/380 (50%), Gaps = 8/380 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  ++  L K        +L+++M K K +     ++  ++      + +  A ++ ++M
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKMEKGKIE-ANVVIYNTIIDGLCKYKHMDDAFDLFNKM 282

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G +PD F +  L+  LC      +A++L  +M ER   P++  F SL+  + KEGKL
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +EA+ +  +M     +P+IV YN+L++G+    ++ +A ++   M  K C P+  +Y  L
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+  C+ +++EE    F EM + G   + VTY TLI G  ++   D   +I   M+  G+
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    K  +LE+ + +   ++K    P++  YN++I   CK G++++  +
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWD 522

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  +    + P    +  M+ GF  +G   EA   F+EM   G L  P  G    L+ +
Sbjct: 523 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL--PDSGCYNTLIRA 580

Query: 500 LLR----AQKVEMAKDVWSC 515
            LR    A   E+ K++ SC
Sbjct: 581 RLRDGDKAASAELIKEMRSC 600



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 192/409 (46%), Gaps = 5/409 (1%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L R   S   +  A+ +  EM K    P    F  LL A+ K +       L ++M+   
Sbjct: 52  LSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG 111

Query: 240 KPSLRHFTS--LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            P   H+T   LL  +C+  +L  A  VL +M   G+EPDIV  ++LL+GY    ++++A
Sbjct: 112 IPH-NHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 170

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
             L+ +M   G  P+  ++  LI  L    K  EA      M   GC+ D+ TY T+++G
Sbjct: 171 VALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 230

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK   ID    +L  M +  I  N + Y  I+    K + +++  +L  +M   G  PD
Sbjct: 231 LCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN +I   C  G   +A  + ++M    ++P   +F  ++  F  +G LIEA + F 
Sbjct: 291 VFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 350

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ R +   P   T  +L+N      +++ A+ +++ +V+K C  +V  +   I     
Sbjct: 351 EMIQRSI--DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCK 408

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              V+E      +M    ++    T+  L++GL +  +  +A +I +K+
Sbjct: 409 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 457



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 170/364 (46%), Gaps = 8/364 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I  L K +     + L  +M  +  KP + T    +  +  +        A  +L
Sbjct: 258 IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRW---SDASRLL 314

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M +    P+   F  L+DA  K   + EA KLFDEM +R   P++  + SL+ G+C  
Sbjct: 315 SDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 374

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +L EA+ +   M      PD+V YN L+ G+ +  ++ +  EL +EM ++G   N  +Y
Sbjct: 375 DRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 434

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LIQ L +    + A + F +M   G   D++TY+ L+ G CK  K+++   + + + +
Sbjct: 435 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 494

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
             + PN  TY  ++    K  ++E+  +L   +   G  P+V  Y  +I   C+ G  +E
Sbjct: 495 SKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 554

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++ EM+     P +  +  ++   L  G    + E  KEM   G +      T+  +
Sbjct: 555 ADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAS--TISMV 612

Query: 497 LNSL 500
           +N L
Sbjct: 613 INML 616



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 86/200 (43%), Gaps = 2/200 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ V L GEM K    P +  ++ ++    K+ +    +++  +M+   +     ++ 
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++++ F  +  L  A     +M+  G    P   TL +LLN     +++  A  +   +V
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGY--EPDIVTLSSLLNGYCHGKRISEAVALVDQMV 178

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
             G + +   +   IH LF +    EA +    M+     P   T+  ++ GL K  +  
Sbjct: 179 EMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 238

Query: 578 IAAEITEKVRKMAAERQITF 597
           +A  + +K+ K   E  +  
Sbjct: 239 LALSLLKKMEKGKIEANVVI 258


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 239/510 (46%), Gaps = 30/510 (5%)

Query: 104 PG-LTERVINRCGDAGNLGYRYYMWAS-----KQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           PG L+  VI+R   +G+L     + A+       P   H++    +LI +LSK  +    
Sbjct: 58  PGFLSSVVIDRACKSGDLRGALLILATMLHSGTPPPNQHAF---ASLIDALSKSTRLADA 114

Query: 158 WALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG-CEPDEFVFGC 214
              +E MR     P ++T   F +++R F   RM+++A E+  EM K   C+PD F++G 
Sbjct: 115 ARALELMRDAGIHPDVVT---FTVMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGV 171

Query: 215 LLDALCKNSSVKEAAKLFDEMR--ERFKPSLRHFTSLLYGWCKEGKLVEA-KYVLVQMKD 271
           L+D  CK   +  A +L  EMR   R +P +  + S++ G C+  + +EA K++   M  
Sbjct: 172 LIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVL 231

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  P +V Y +L+ G  +  KM  A  +   M  +   P   SY+V+I  L +  ++ +
Sbjct: 232 QGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYD 291

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A R   EME  GCE +VV YTTLI G CKS  +D  Y +   M + G  PNQ TY  ++ 
Sbjct: 292 AYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLID 351

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              + +  E  + L   +R   C  DV+ Y  V+   C+   L +A  ++ EM  A +S 
Sbjct: 352 TFCRNDRTETALGLFDHIRDY-CPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSA 410

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL--NSLLRAQKVEMA 509
            T ++ V++HG        EA    +E+           G +  LL  N+++    +E  
Sbjct: 411 DTHAYNVLLHGAFRSERPEEAFRILEEL-------GDDPGCVANLLTYNTVIAGCCLESG 463

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             ++  +  +G   +   ++  I  L  +G +  A   C +M+ + + P      +++  
Sbjct: 464 MVLFYEMRQRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEMLASGLSPPSGVLGRVVAR 523

Query: 570 LKKLYNRQIAAEITEKVRKMAAERQITFKM 599
           L       +AA++ E    MA +   +F +
Sbjct: 524 LCWSRRGDLAAKVIEMA--MAVDDTASFSL 551


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 251/522 (48%), Gaps = 13/522 (2%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRYYMWASKQPN 133
           E+  RILK F    P  E AL+   + +   L   V+    D G N+  +++ WA+K+ N
Sbjct: 58  ERFIRILKIFKWG-PDAEKALEVLMLKVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRN 114

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           Y H    Y ALI+ L  + ++G +W +++EM +    ++T      ++R   +A+M+ KA
Sbjct: 115 YEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKA 174

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLLY 251
           + +  ++    C+P    +  ++  L      ++  +L++EM       P    +++L+ 
Sbjct: 175 VAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALIS 234

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +CK G+   A  +L +MKD G +P   +Y  L++ + ++  +  A  L +EMR + C P
Sbjct: 235 AFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRP 294

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT LI+ L +  + +EA   F EM R GC  D V    +I+   K+ ++D   ++ 
Sbjct: 295 DVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLF 354

Query: 372 DSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           + M     +P+ +TY  I+ A  E K  + E       M+  G  P    Y+++I   CK
Sbjct: 355 EEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCK 414

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMVGR-GLLSAP 488
               ++A+ +  EM+     P   ++  ++   LG+    + A E F+E+    G  SA 
Sbjct: 415 TNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDIAHELFQELKENCGSSSAR 473

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            Y     ++  L +A +++ A +++  +   GC  NVYA+   +  L   G + EA +  
Sbjct: 474 VYAV---MIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTM 530

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
             M +   +P  +++  ++ GL K      A E+   +++ A
Sbjct: 531 RRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSA 572



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 7/344 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI    K+        L EEMR +  +P + T   +  L+R    A    +A    
Sbjct: 263 IYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFT---YTELIRGLGKAGRFDEAYNFF 319

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG-WCK 255
            EM + GC PD  V   +++ L K   + +A KLF+EM   +  PS+  + +++   +  
Sbjct: 320 HEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFES 379

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + ++ E      +MK +G  P    Y+ L+ G+ +  +   A  LL+EM  KG  P   +
Sbjct: 380 KSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAA 439

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI AL + ++ + A+  F E++ +   +    Y  +I    K+ ++D    + D M 
Sbjct: 440 YCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMN 499

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  PN   Y  +M    +   L+E +  M  M++ GC+PD+++YN+++    K G   
Sbjct: 500 KLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPH 559

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            A+ + + M+ +++ P   S+  ++      G   EA +  KEM
Sbjct: 560 RAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEM 603



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 144/330 (43%), Gaps = 42/330 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI+ L K  +F   +    EMR+E  +P    T V   ++     A  +  A+++ +
Sbjct: 299 YTELIRGLGKAGRFDEAYNFFHEMRREGCRPD---TVVINNMINFLGKAGRLDDAVKLFE 355

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSS-VKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
           EM    C P    +  ++ AL ++ S + E +  F+ M+     PS   ++ L+ G+CK 
Sbjct: 356 EMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKT 415

Query: 257 GKLVEAKYVLVQMKDAGFEP------------------DIV-----------------VY 281
            +  +A  +L +M + GF P                  DI                  VY
Sbjct: 416 NRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVY 475

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             ++    + G++ DA  L  EM + GC PN  +Y  L+  L R   ++EA      M+ 
Sbjct: 476 AVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQE 535

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  D+ +Y  +++G  K+    R  E+L +M Q  I P+ ++Y  ++ A       EE
Sbjct: 536 HGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEE 595

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             +LM EM  +G   D+  Y+ ++    K+
Sbjct: 596 AAKLMKEMNVLGFEYDLITYSSILEAIGKV 625



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +L K +++     L +E+ KE     +  V+ ++++    A  +  A+ + DEM
Sbjct: 440 YCSLIDALGKAKRYDIAHELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM 498

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKL 259
            K GC P+ + +  L+  L +   + EA      M+E    P +  +  +L G  K G  
Sbjct: 499 NKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGP 558

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +L  MK +  +PD V YN +L   +  G   +A +L+KEM   G + +  +Y+ +
Sbjct: 559 HRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSI 618

Query: 320 IQALCRME 327
           ++A+ +++
Sbjct: 619 LEAIGKVD 626


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 243/527 (46%), Gaps = 27/527 (5%)

Query: 66  SHNEFSH-DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRY 124
           ++N F + D+  + +I+++     PK+ +    +   L P    +++    +   L  ++
Sbjct: 34  ANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSA---LAPIWVSKILLGLREDPKLALKF 90

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE------MRKEKP------QLI 172
           + WA  Q  + H+ + Y  ++  + + R +      ++E      M    P       L 
Sbjct: 91  FKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLW 150

Query: 173 TTE--------VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           +T         VF +L   F    ++++A E    M  +   P       LL  L K+ +
Sbjct: 151 STRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGN 210

Query: 225 VKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
            +   K F++M      PS+  +  ++   CKEG L  ++ + VQM++ G  PD+V YN+
Sbjct: 211 GQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNS 270

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ GY ++G + +   L  EM+  GC P+  +Y  LI   C+ EKM  A   F EM+ +G
Sbjct: 271 LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNG 330

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + +VVTY+TLI  FCK   +    ++L  M + G+LPN+ TY  ++ A+ K   L E  
Sbjct: 331 LKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAW 390

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +L+ +M + G   ++  Y  ++   CK G + EA  V+  M    +SP    +  +VHG+
Sbjct: 391 KLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY 450

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           +    + +A +  K+M    +   P      +++      +K+E  K +   + ++G   
Sbjct: 451 IKAERMEDAMKILKQMTECNI--KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 508

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           N    T  I + F  G   +A ++  +M D  V     T+  L+ GL
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 555



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 211/453 (46%), Gaps = 8/453 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K+     V +L  EM+     P +IT    +    +F     + +A E   
Sbjct: 268 YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK---MPRAFEYFS 324

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G +P+   +  L+DA CK   ++ A KL  +MR     P+   +TSL+   CK G
Sbjct: 325 EMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAG 384

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA  +L  M  AG + +IV Y  LL G  + G+M +A E+ + M + G  PN   YT
Sbjct: 385 NLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYT 444

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+    + E+ME+A +   +M     + D++ Y ++I G C  RK++    IL+ M  R
Sbjct: 445 ALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSR 504

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N +    I+ A+ K  +  + +    EM+ +G    +  Y V+I   C+ G ++ A
Sbjct: 505 GISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELA 564

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           V+ +  M +  L P    +  ++ G     C+  A + F EM  RG+   P      AL+
Sbjct: 565 VDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM--TPDITAFTALI 622

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  L+   ++ A  + S +     E +++ +T  +      G + +A  +  +M++  ++
Sbjct: 623 DGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGIL 682

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           P+      L+R   K      A E+  ++ +MA
Sbjct: 683 PEEVLCICLLREYYKRGQLDEAIELKNEMERMA 715



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 149/351 (42%), Gaps = 37/351 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +  K       W L+ +M +   +L       +L     + RM++ A EV   M
Sbjct: 373 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIE-AEEVFRSM 431

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            K G  P++ V+  L+    K   +++A K+  +M E   KP L  + S+++G C + KL
Sbjct: 432 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKL 491

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD--------- 310
            E K +L +MK  G   + V+   ++  Y + GK +DA    +EM+  G +         
Sbjct: 492 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 551

Query: 311 --------------------------PNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
                                     PN   YT LI  LC    +E A + F EM+  G 
Sbjct: 552 IDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM 611

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             D+  +T LI G  K   +     ++  M +  I  +   Y  ++    +  EL +  +
Sbjct: 612 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARK 671

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              EM + G +P+      ++R   K G+L EA+ + NEME  + S   D+
Sbjct: 672 FFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYSFEFDA 722


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 255/529 (48%), Gaps = 17/529 (3%)

Query: 70   FSHDV----EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRY 124
            ++H V    E+  RILK F    P  E AL+   + +   L   V+    D G N+  ++
Sbjct: 1043 YTHSVRVLDERFIRILKIFKWG-PDAEKALEVLMLRVDHWLVREVMKT--DVGVNVKMQF 1099

Query: 125  YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
            + WA+K+ NY H    Y ALI  L  + ++G +W +++EM +    ++T      ++R  
Sbjct: 1100 FRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRML 1159

Query: 185  ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS 242
             +A+MV++AI +  ++    C+P    +  ++  L      ++  +L++EM       P 
Sbjct: 1160 GNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPD 1219

Query: 243  LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
               +++L+  +CK G+   A  +L +MK+ G +P   +Y  L++ + +      A  L +
Sbjct: 1220 TVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFE 1279

Query: 303  EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            EMR + C P+  +YT LI+ L +  +++EA   F EM+R GC  D V    +I+   K+ 
Sbjct: 1280 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 1339

Query: 363  KIDRCYEILDSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNY 421
            ++D   ++   M     +P+ +TY  I+ A  E K    E       M++ G  P    Y
Sbjct: 1340 RLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 1399

Query: 422  NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMV 480
            +++I   CK   +++A+ +  EM+     P   ++  ++   LG+    + ACE F+E+ 
Sbjct: 1400 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELK 1458

Query: 481  GR-GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
               G  SA  Y     ++  L +A +++ A +++  +   GC  +VYA+   +  L   G
Sbjct: 1459 ENCGSSSARVYAV---MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTG 1515

Query: 540  HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             + EA S    M +   +P  +++  ++ GL K      A E+   +++
Sbjct: 1516 MLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQ 1564



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 7/344 (2%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            +Y  LI    K        +L EEMR +  +P + T   +  L+R    A  + +A    
Sbjct: 1257 IYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFT---YTELIRGLGKAGRIDEAYHFF 1313

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG-WCK 255
             EM + GC PD      +++ L K   + +A KLF EM   R  PS+  + +++   +  
Sbjct: 1314 CEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFES 1373

Query: 256  EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            + +  E      +MK++G  P    Y+ L+ G+ +  +M  A  LL+EM  KG  P   +
Sbjct: 1374 KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAA 1433

Query: 316  YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
            Y  LI AL + ++ + A   F E++ +   +    Y  +I    K+ ++D    + D M 
Sbjct: 1434 YCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMN 1493

Query: 376  QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            + G  P+   Y  +M    +   L+E +  M  M++ GC+PD+++YN+++    K G   
Sbjct: 1494 KLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPH 1553

Query: 436  EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             A+ + + M+ +++ P   S+  ++      G   EA +  KEM
Sbjct: 1554 RAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 6/326 (1%)

Query: 110  VINRCGDAGNLGYRYYMWASKQPNYVHSYDVY-RALIKSLSKMRKFGAVWALMEEMRKEK 168
            +I   G AG +   Y+ +   Q        V+   +I  L K  +      L +EM   +
Sbjct: 1296 LIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLR 1355

Query: 169  --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
              P ++T    +  +  F S     +     + M + G  P  F +  L+D  CK + ++
Sbjct: 1356 CIPSVVTYNTIIKAL--FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRME 1413

Query: 227  EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            +A  L +EM E+ F P    + SL+    K  +   A  +  ++K+        VY  ++
Sbjct: 1414 KAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMI 1473

Query: 286  SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
                + G++ DA  +  EM + GC P+  +Y  L+  L R   ++EA      M+  GC 
Sbjct: 1474 KHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCI 1533

Query: 346  ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             D+ +Y  +++G  K+    R  E+L +M Q  + P+ ++Y  ++ A       EE  +L
Sbjct: 1534 PDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKL 1593

Query: 406  MGEMRKIGCVPDVSNYNVVIRLACKL 431
            M EM  +G   D+  Y+ ++    K+
Sbjct: 1594 MKEMNTLGFEYDLITYSSILEAIGKV 1619



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            Y +LI +L K +++     L +E+ KE     +  V+ ++++    A  +  AI + DEM
Sbjct: 1434 YCSLIDALGKAKRYDLACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 1492

Query: 201  PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKL 259
             K GC PD + +  L+  L +   + EA      M+E    P +  +  +L G  K G  
Sbjct: 1493 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGP 1552

Query: 260  VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
              A  +L  MK +   PD+V YN +L   +  G   +A +L+KEM   G + +  +Y+ +
Sbjct: 1553 HRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSI 1612

Query: 320  IQALCRME 327
            ++A+ +++
Sbjct: 1613 LEAIGKVD 1620


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 209/426 (49%), Gaps = 9/426 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           ++  +I  L +  +      +  +M    P    T  +  L+   + AR ++ A++VL E
Sbjct: 7   LHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLT--YTKLVHGLSKARRLRDAVQVLQE 64

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M      PD      ++ +LC    V +A +L +EM  R    +   +++L+ G CK  +
Sbjct: 65  MVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCER 124

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  ++  M + G  P +V YN++++G+ +  ++ +A   +++M  +GC P+  +YT 
Sbjct: 125 LDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTA 184

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   C+   +        E+ R G   D+VTY+T+I G CK+ ++    +I + M    
Sbjct: 185 LIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---S 241

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P  +TY  ++  + +  +++E + L+G+M    C PDV  Y  ++   CK+G L +A 
Sbjct: 242 CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAY 301

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++ +M A  LSP   +F  +V G  G+G + +A E  +E+  RG    P   T   +++
Sbjct: 302 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG--CPPTIYTYNCVVD 359

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +A +V  A+++ +   ++G   N   + I +      G   +A  Y LD ++++  P
Sbjct: 360 GYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY-LDQLNSEGGP 418

Query: 559 QPDTFA 564
            P + A
Sbjct: 419 CPTSVA 424



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 228/494 (46%), Gaps = 15/494 (3%)

Query: 102 LRPG--LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYD--VYRALIKSLSKMRKFGAV 157
           + PG  L   VI     AG L  R+ +   +Q N  H  D   Y  L+  LSK R+    
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRL--RHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDA 58

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
             +++EM   +  +       ++++       V  A E+++EM   G   +   +  L+D
Sbjct: 59  VQVLQEMVSAR-HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVD 117

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
            LCK   + EA  L + M ER   P++  + S++ G+C+  ++ EA   + QM   G  P
Sbjct: 118 GLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHP 177

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           DI+ Y  L+ G+ +   +    ELL E+ R+G  P+  +Y+ +I  LC+  ++ +A   F
Sbjct: 178 DIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 237

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM    C    +TY +LI G+C++  +D    +L  M+     P+ +TY  +M A  K 
Sbjct: 238 EEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKM 294

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             L++  EL  +M      PDV  +  ++   C  G +++A+ +  E+      P   ++
Sbjct: 295 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +V G+     + +A E   +   RG +  P   T   L+    RA + + A      +
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFV--PNTVTYNILVAGCCRAGRTDQALQYLDQL 412

Query: 517 VTKG--CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            ++G  C  +V  + I + +L  +G   +A  +  +M+    +P   TFA ++  L K +
Sbjct: 413 NSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAH 472

Query: 575 NRQIAAEITEKVRK 588
             Q A E+ E++ K
Sbjct: 473 QPQQAHELLEEMIK 486



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 194/385 (50%), Gaps = 13/385 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y AL+  L K  +     AL+E M  R   P ++T   +  ++  F  AR V +A   ++
Sbjct: 112 YSALVDGLCKCERLDEAVALVETMAERGCAPTVVT---YNSIITGFCRARRVDEAHGFME 168

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   GC PD   +  L+   CK+  V    +L  E+  R F P +  +++++ G CK G
Sbjct: 169 QMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAG 228

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  +  +M  A   P  + YN+L+ GY + G M +A  LL +M    C P+  +YT
Sbjct: 229 RLRDAVDIFEEMSCA---PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYT 285

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+ A C+M ++++A   F +M  +    DVVT+T+L+ G C   +++   E+L+ + +R
Sbjct: 286 TLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 345

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P   TY  ++  + K  ++ +  EL+ + R  G VP+   YN+++   C+ G   +A
Sbjct: 346 GCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 405

Query: 438 VNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +   +++  E          + +++      G   +A ++++EM+ RG +  P   T   
Sbjct: 406 LQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV--PAAATFAT 463

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKG 520
           ++ +L +A + + A ++   ++  G
Sbjct: 464 VVFALCKAHQPQQAHELLEEMIKYG 488



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 175/378 (46%), Gaps = 44/378 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I    + R+       ME+M  E   P +IT   +  L+  F  +R V + +E+L 
Sbjct: 147 YNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT---YTALIGGFCKSRDVGRGLELLG 203

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
           E+ + G  PD   +  ++D LCK   +++A  +F+EM     P+   + SL+ G+C+ G 
Sbjct: 204 EVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRAGD 261

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +L +M D    PD+V Y  L+S + +MG++ DA+EL ++M      P+  ++T 
Sbjct: 262 MDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTS 321

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC   +ME+A     E+ R GC   + TY  ++ G+CK+ ++ +  E++     RG
Sbjct: 322 LVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRG 381

Query: 379 ILPNQLTY-------------------------------------LHIMLAHEKKEELEE 401
            +PN +TY                                       I+ A  +    ++
Sbjct: 382 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 441

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            V+   EM + G VP  + +  V+   CK  + ++A  +  EM     +PG  +   +V 
Sbjct: 442 AVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVS 501

Query: 462 GFLGQGCLIEACEYFKEM 479
            +   G + +A E   E+
Sbjct: 502 AYCRAGMIQKADELASEL 519



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 136/275 (49%), Gaps = 8/275 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    +         L+ +M  +K  P ++T   +  LM  F     +  A E+  
Sbjct: 249 YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVT---YTTLMSAFCKMGRLDDAYELFQ 305

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M      PD   F  L+D LC    +++A +L +E+  R   P++  +  ++ G+CK  
Sbjct: 306 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKAN 365

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNANS 315
           ++ +A+ ++   +  GF P+ V YN L++G  + G+   A + L ++  +G  C  +   
Sbjct: 366 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 425

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++ ALCR  + ++A + + EM + G      T+ T++   CK+ +  + +E+L+ MI
Sbjct: 426 YAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMI 485

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           + G  P   T   ++ A+ +   +++  EL  E+R
Sbjct: 486 KYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/576 (25%), Positives = 251/576 (43%), Gaps = 65/576 (11%)

Query: 47  CLKTK--EDDCKCNNT-------TDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQH 97
           CL T+    D K NNT         T+ + N  + D   I +++ K H    KL+  ++ 
Sbjct: 13  CLSTRFPSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQH--WSKLKTIVKE 70

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           +       L + + N      +L   Y+ W  K+   +H+ + +  L+  L+  + +  +
Sbjct: 71  TN---PSSLLQHLFNSEAQP-DLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKI 126

Query: 158 WALMEEMRKEKPQLITT---------------EVFV-ILMRRFASARMVKKAIEVLDEMP 201
            AL++   K      +T                + V +L+  +     +  A+E  D   
Sbjct: 127 RALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAG 186

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLV 260
            YG          +L +L K   +     ++ EM R R   ++  F  ++ G CK GK  
Sbjct: 187 DYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQ 246

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           +A  V+  MK  GF P ++ YN ++ GY + GKM  A  LLKEM  K   PN  ++ +LI
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
              CR E +  A + F EM+R G + +VVTY +LI+G C + K+D    + D M   G+ 
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN +TY  ++    KK+ L+E  E++ ++ K G  P+V  +N +I    K G + +A  +
Sbjct: 367 PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLL 426

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-------------- 486
            + M    + P   ++  ++ GF  +G + EA +  KEM G GL +              
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486

Query: 487 -------------------APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
                               P + T  AL++   R      A +V + +  KG   N+  
Sbjct: 487 KGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVT 546

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           + + I    + G ++EA     +M++  ++P   T+
Sbjct: 547 YNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTY 582



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVK 191
           +  S   Y  +I    K  K     AL++EM  ++  P  IT   F IL+  F     V 
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT---FNILIDGFCRDENVT 316

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A +V +EM + G +P+   +  L++ LC N  + EA  L D+M     KP++  + +L+
Sbjct: 317 AAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALI 376

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+CK+  L EA+ +L  +   G  P+++ +N L+  Y + G+M DAF L   M   G  
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN ++Y  LI   CR   ++EA +   EME +G +AD+VTY  L+   CK  +  +   +
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M + G+ P+ LTY  ++  + ++      + +   M K G   ++  YNV+I+  C 
Sbjct: 497 LDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCN 556

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            G+L+EA  + NEM    L P   ++ ++
Sbjct: 557 KGKLEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI    +         L +EM     K  L+T  + V  + +    R   KA+ +L
Sbjct: 441 TYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR---KAVRLL 497

Query: 198 DEMPKYGCEPDEFVFGCLLDALCK--NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255
           DEM + G  P    +  L+D   +  NS+     +   E + R + ++  +  L+ G+C 
Sbjct: 498 DEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR-RANIVTYNVLIKGFCN 556

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           +GKL EA  +L +M + G  P+   Y+ L     + G + D
Sbjct: 557 KGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPD 597


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 174/344 (50%), Gaps = 2/344 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I  L K+ +      L ++M +   QL     +  L+      R V +A+++   M
Sbjct: 83  YTTIINGLCKIGETALAAGLFKKMEEAGCQL-NVVTYSTLIHSLCKYRRVNEALDIFSYM 141

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
                 P  F +  L+  LC  S  KEA+ L +EM      P++  F  L+  +CKEGK+
Sbjct: 142 KAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKV 201

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           + A+ VL  M + G EPD+V YN+L+ GY+   ++ +A +L   M  KGC P+  SY++L
Sbjct: 202 LAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSIL 261

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+ ++++EA + F EM   G   + V+Y TLI G C+  ++    ++  +M   G 
Sbjct: 262 INGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGN 321

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           LPN  TY  ++    K+  L +   L   M+     P++  YN+++   CK G LK+A  
Sbjct: 322 LPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARE 381

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +++E+    L P    +  +++G   +G L EA E F+ M   G
Sbjct: 382 LFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG 425



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 203/421 (48%), Gaps = 6/421 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   F  L+          +A+E+ D+M   GC+PD++ +  +++ LCK      
Sbjct: 42  QPTIVT---FTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETAL 98

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           AA LF +M E   + ++  +++L++  CK  ++ EA  +   MK     P I  Y +L+ 
Sbjct: 99  AAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQ 158

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G     +  +A  LL EM      PN  ++ VL+   C+  K+  A      M   G E 
Sbjct: 159 GLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEP 218

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DVVTY +L+ G+    ++    ++ D MI +G  P+  +Y  ++  + K + ++E  +L 
Sbjct: 219 DVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLF 278

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM   G  P+  +YN +I   C+LG L+EA +++  M      P   ++ +++ GF  Q
Sbjct: 279 NEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQ 338

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L +A   F+ M    L   P       L+N++ ++  ++ A++++S +   G + NV 
Sbjct: 339 GYLGKAFRLFRAMQSTYL--KPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQ 396

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            +T  I+ L   G + EA     +M D    P   ++  ++RG  +  +   A  +  ++
Sbjct: 397 IYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEM 456

Query: 587 R 587
           R
Sbjct: 457 R 457



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 197/412 (47%), Gaps = 6/412 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL+  F   + V     VL +  K G +P    F  L++ L K     +A +LFD+M  R
Sbjct: 15  ILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVAR 74

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             +P    +T+++ G CK G+   A  +  +M++AG + ++V Y+ L+    +  ++ +A
Sbjct: 75  GCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEA 134

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++   M+ K   P   +YT LIQ LC   + +EA+    EM       +VVT+  L+  
Sbjct: 135 LDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDT 194

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           FCK  K+     +L +M + G+ P+ +TY  +M  +    E+ E  +L   M   GC PD
Sbjct: 195 FCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPD 254

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V +Y+++I   CK   + EA  ++NEM     +P   S+  ++HG    G L EA + FK
Sbjct: 255 VFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFK 314

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            M   G L  P   T   LL+   +   +  A  ++  + +   + N+  + I ++++  
Sbjct: 315 NMHTNGNL--PNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCK 372

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           +G++K+A     ++    + P    +  ++ GL K     +  E  E  R M
Sbjct: 373 SGNLKDARELFSELFVIGLQPNVQIYTTIINGLCK---EGLLDEALEAFRNM 421



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 12/290 (4%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGA---VWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           PN V     +  L+ +  K  K  A   V   M EM  E P ++T   +  LM  ++   
Sbjct: 183 PNVV----TFNVLVDTFCKEGKVLAAEGVLKTMTEMGVE-PDVVT---YNSLMYGYSMWT 234

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V +A ++ D M   GC+PD F +  L++  CK   + EA +LF+EM  +   P+   + 
Sbjct: 235 EVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYN 294

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L++G C+ G+L EA+ +   M   G  P++  Y  LL G+ + G +  AF L + M+  
Sbjct: 295 TLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQST 354

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN   Y +L+ A+C+   +++A   F E+   G + +V  YTT+I+G CK   +D  
Sbjct: 355 YLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEA 414

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            E   +M   G  P++ +Y  I+    + ++    V L+GEMR  G + D
Sbjct: 415 LEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITD 464



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M+ AG  P+    N L++ + Q+ ++   F +L +  + G  P   ++T LI  L ++ K
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
             +A   F +M   GC+ D  TYTT+I+G CK  +      +   M + G   N +TY  
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++ +  K   + E +++   M+     P +  Y  +I+  C     KEA  + NEM + +
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P   +F V+V  F  +G ++ A    K M   G+   P   T  +L+       +V  
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGV--EPDVVTYNSLMYGYSMWTEVVE 238

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A+ ++  ++TKGC+ +V++++I I+       + EA     +M+     P   ++  L+ 
Sbjct: 239 ARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIH 298

Query: 569 GLKKL 573
           GL +L
Sbjct: 299 GLCQL 303



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 6/213 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    K ++      L  EM  +   P  ++   +  L+        +++A ++  
Sbjct: 258 YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVS---YNTLIHGLCQLGRLREAQDLFK 314

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
            M   G  P+ + +  LLD  CK   + +A +LF  M+  + KP+L  +  L+   CK G
Sbjct: 315 NMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSG 374

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A+ +  ++   G +P++ +Y  +++G  + G + +A E  + M   GC P+  SY 
Sbjct: 375 NLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYN 434

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           V+I+   + +    A     EM   G   D  T
Sbjct: 435 VIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 39/258 (15%)

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME +G   +  T   LI+ FC+ +++D  + +L   I+ G+ P  +T+  ++    K  +
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
             + VEL  +M   GC PD   Y  +I   CK+GE   A  ++ +ME A           
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEA----------- 109

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
                   GC +    Y                    L++SL + ++V  A D++S +  
Sbjct: 110 --------GCQLNVVTY------------------STLIHSLCKYRRVNEALDIFSYMKA 143

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
           K     ++ +T  I  L +    KEA +   +M   ++MP   TF  L+    K   + +
Sbjct: 144 KDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCK-EGKVL 202

Query: 579 AAE-ITEKVRKMAAERQI 595
           AAE + + + +M  E  +
Sbjct: 203 AAEGVLKTMTEMGVEPDV 220


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 204/422 (48%), Gaps = 19/422 (4%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           V L  GL  ++++R  D          WA     + HS D Y   +  L K +K+  +  
Sbjct: 81  VNLSDGLVYKLLHRFRDDWKSALGVLNWAESCKGHKHSNDAYDMAVDILGKAKKWDRLKV 140

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            +E MR +K  L+T      +MRRFA A   ++A+ + D++ ++G E +      LLD L
Sbjct: 141 FVERMRGDK--LVTLNTIAKIMRRFAGAGEWEEAVGIFDKLGEFGLEKNTESMNLLLDTL 198

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           CK   V++A  +  E++    P+   F   ++GWCK  ++ EA + + +MK  GF P ++
Sbjct: 199 CKEKRVEQARVVLLELKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVI 258

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  ++  Y Q  +    +E+L EM   G  PN+ +YT ++ +L   ++ EEA R    M
Sbjct: 259 SYTTIIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRM 318

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKKEE 398
           +RSGC+ D + Y  LI    +S +++    +    M + G+  N  TY  ++  +   +E
Sbjct: 319 KRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDE 378

Query: 399 LEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTD 454
            ++ +EL+ EM     C PDV  Y  ++R   K G++ E   +  EM      SL   T 
Sbjct: 379 EDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTY 438

Query: 455 SFVVMVHGFLGQGCLIEACEY----FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           +F++       + C    CE+    F+EM+ + +   P++ T   LL  + +    E A+
Sbjct: 439 TFLIQ------RLCRANICEWAYCLFEEMISQDI--TPRHRTCLLLLEEVKKKNMHESAE 490

Query: 511 DV 512
            +
Sbjct: 491 RI 492



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 4/238 (1%)

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG   + ++Y + +  L + +K +   + FVE  R      + T   ++  F  + + + 
Sbjct: 113 KGHKHSNDAYDMAVDILGKAKKWDRL-KVFVERMRGDKLVTLNTIAKIMRRFAGAGEWEE 171

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              I D + + G+  N  +   ++    K++ +E+   ++ E+ K    P+   +N+ I 
Sbjct: 172 AVGIFDKLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLEL-KSHITPNAHTFNIFIH 230

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK   ++EA+    EM+     P   S+  ++  +  Q   ++  E   EM   G  S
Sbjct: 231 GWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLSEMEANG--S 288

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            P   T   +++SL   ++ E A  V + +   GC+ +   +   IH+L  +G ++EA
Sbjct: 289 PPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEA 346


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 219/444 (49%), Gaps = 15/444 (3%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           W S+ P Y HS   Y +L+  L      G V+ +   M K    +  T   + L R+   
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVADTLFVLDLCRKMNK 171

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
               +   +++      GC      +  LL++L +   V E  +++ EM E +  P++  
Sbjct: 172 DESFELKYKLI-----IGC------YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYT 220

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +  ++ G+CK G + EA   +  + +AG +PD   Y +L+ GY Q   +  AF++ KEM 
Sbjct: 221 YNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMP 280

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KGC  N  +YT LI  LC   +++EA   FV+M+   C   V TYT LI   C S +  
Sbjct: 281 LKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKS 340

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               ++  M ++GI PN  TY  ++ +   + +LE+  EL+G+M + G +P+V  YN +I
Sbjct: 341 EALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALI 400

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK G +++A++V   ME+ +L P T ++  ++ G+  +  + +A     +M+ R +L
Sbjct: 401 NGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVL 459

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  +L++   R+   + A  + S +  +G   + + +T  I SL  +  V+EAC
Sbjct: 460 --PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEAC 517

Query: 546 SYCLDMMDADVMPQPDTFAKLMRG 569
                +   DV+P    +  L+ G
Sbjct: 518 DLFDSLEQKDVIPNVVMYTALIDG 541



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 210/487 (43%), Gaps = 63/487 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LIK+L    +      L++EM ++  KP + T   + +L+    S   ++KA E+L 
Sbjct: 326 YTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHT---YTVLIDSLCSQCKLEKARELLG 382

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M + G  P+   +  L++  CK   +++A  + + M  R  +P+ R +  L+ G+CK  
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN 442

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  VL +M +    PD+V YN+L+ G  + G    A+ LL  M  +G  P+  +YT
Sbjct: 443 -VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYT 501

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL----------------------- 354
            +I +LC+ +++EEA   F  +E+     +VV YT L                       
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSK 561

Query: 355 ------------ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
                       I G C   K+     + + M++  + P   T   ++    K  + +  
Sbjct: 562 NCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHA 621

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
                +M   G  PD   Y   I+  C+ G L++A ++  +M+   +SP   ++  ++ G
Sbjct: 622 YRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKG 681

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM-AKDVWSCIVTKGC 521
           +   G    A    K M   G    P   T  +L+  LL  +  ++   +   C+++   
Sbjct: 682 YGDLGRTNSAFVVLKRMHDTG--CEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMM 739

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
           E ++    +                    M++  V P   ++ KLM G+ ++ N ++A +
Sbjct: 740 EFDIVVELLE------------------KMVEHGVTPNAKSYEKLMLGICEIGNLRVAEK 781

Query: 582 ITEKVRK 588
           + + +++
Sbjct: 782 VFDHMQQ 788



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 164/413 (39%), Gaps = 93/413 (22%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ++I SL K ++      L + + ++K  +    ++  L+  +  A  V +A  +L++M
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSL-EQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKL----------------------------F 232
               C P+   F  L+  LC +  +KEA  L                            F
Sbjct: 559 LSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDF 618

Query: 233 DEMRERF--------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
           D    RF        KP    +T+ +  +C+EG+L +A+ ++ +MK+ G  PD+  Y++L
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSL 678

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDP--------------------------------- 311
           + GY  +G+   AF +LK M   GC+P                                 
Sbjct: 679 IKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNM 738

Query: 312 --------------------NANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVT 350
                               NA SY  L+  +C +  +  A + F  M+ + G     + 
Sbjct: 739 MEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELV 798

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH-EKKEELEECVELMGEM 409
           +  L+S  CK  K +   +++D MI  G LP QL    I++    KK E E    +   +
Sbjct: 799 FNALLSCCCKLEKHNEAAKVVDDMICVGHLP-QLESCKILICRLYKKGEKERGTSVFQNL 857

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            + G   D   + ++I    K G ++    ++N ME    +  + ++ +++ G
Sbjct: 858 LQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 204/425 (48%), Gaps = 16/425 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP  +   ++  L++        ++A+ +L  M K G +PD   +  ++  LCK+  ++E
Sbjct: 478 KPNAV---IYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEE 534

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A     EM ER  KP++  + +L++G+CK G++  A     +M   G  P+ VV   L+ 
Sbjct: 535 AKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALID 594

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           GY + G  T+A  + + M  +   P+  +Y+ LI  L R  K++ A     E    G   
Sbjct: 595 GYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVP 654

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DV TY ++ISGFCK   I + +++ + M Q+GI PN +TY  ++    K  E+E   EL 
Sbjct: 655 DVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELF 714

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             +   G   +   Y  +I   CK G L +A  +++EM    + P +  +  ++ G   +
Sbjct: 715 DGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKE 774

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G   +A   F E V +G  S     +L AL++   ++ KV  A  +   +V K  + +  
Sbjct: 775 GNTEKALSLFLESVQKGFASTS---SLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHV 831

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG---------LKKLYNRQ 577
            +TI I      G +KEA  + +DM   ++MP   T+  L+ G         +  L++  
Sbjct: 832 TYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEM 891

Query: 578 IAAEI 582
           IA +I
Sbjct: 892 IAKDI 896



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 219/461 (47%), Gaps = 9/461 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           Y  +I  L +  +    + L + M K+    +  +VF   IL+  F   +   +A  +L+
Sbjct: 274 YNVVIGGLCRAGEVDEAFELKKLMDKKG---LVADVFTYSILIDGFGKQKRCTEAKLMLE 330

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G +P    +  L+D   +     EA ++ +EM  R  K +L  + +L+ G CK G
Sbjct: 331 EMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFG 390

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  +L +M   G +PD   YNN++ GY +    +   +LL EM++    P A +  
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCG 450

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  LCR   +E+A+R F  M   G + + V YTTLI G  +  +      IL  M ++
Sbjct: 451 MIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKK 510

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ L Y  +++   K  ++EE  + + EM + G  P+V  Y  +I   CK GE++ A
Sbjct: 511 GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVA 570

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              + EM    ++P       ++ G+  +G   EA   F+ M+GR +   P   T  AL+
Sbjct: 571 DRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV--HPDVRTYSALI 628

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + LLR  K++ A ++ S  + KG   +V+ +   I      G + +A      M    + 
Sbjct: 629 HGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGIS 688

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV-RKMAAERQITF 597
           P   T+  L+ GL K    + A E+ + +  K  A   +T+
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTY 729



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 201/413 (48%), Gaps = 8/413 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y AL+K + K        AL+ EM     KP    T+ +  ++  +   +   +  ++L 
Sbjct: 379 YNALVKGVCKFGDMEKADALLNEMIMVGIKPD---TQTYNNMIEGYLKEQNTSRVKDLLS 435

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM K    P  +  G +++ LC++ S+++A+++F+ M     KP+   +T+L+ G  +EG
Sbjct: 436 EMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEG 495

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA  +L  M   G +PD++ YN+++ G  +  KM +A + L EM  +G  PN  +Y 
Sbjct: 496 RFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYG 555

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+  +M+ A+R F EM   G   + V  T LI G+CK         I   M+ R
Sbjct: 556 ALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGR 615

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + P+  TY  ++    +  +L+  +EL+ E  + G VPDV  YN +I   CK G + +A
Sbjct: 616 SVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKA 675

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M    +SP   ++  +++G    G +  A E F  + G+GL  A    T   ++
Sbjct: 676 FQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGL--AHNAVTYATII 733

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
           +   ++  +  A  ++  +  KG   + + ++  I      G+ ++A S  L+
Sbjct: 734 DGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLE 786



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 176/363 (48%), Gaps = 3/363 (0%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D + +  L++A  +  + KE  +L  EM E+   PSL  +  ++ G C+ G++ EA  + 
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELK 294

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
             M   G   D+  Y+ L+ G+ +  + T+A  +L+EM  KG  P   +YT LI    R 
Sbjct: 295 KLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQ 354

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               EA R   EM   G + ++ TY  L+ G CK   +++   +L+ MI  GI P+  TY
Sbjct: 355 GDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTY 414

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
            +++  + K++      +L+ EM+K   VP      ++I   C+ G +++A  V+  M +
Sbjct: 415 NNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVS 474

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             + P    +  ++ G + +G   EA    K M  +G+   P      +++  L +++K+
Sbjct: 475 LGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGV--QPDVLCYNSVIIGLCKSRKM 532

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           E AKD    ++ +G + NVY +   IH    +G ++ A  Y  +M+   + P       L
Sbjct: 533 EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTAL 592

Query: 567 MRG 569
           + G
Sbjct: 593 IDG 595



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 192/476 (40%), Gaps = 77/476 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I  L K RK       + EM  R  KP + T   +  L+  +  +  ++ A     
Sbjct: 519 YNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYT---YGALIHGYCKSGEMQVADRYFK 575

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P++ V   L+D  CK  S  EA  +F  M  R   P +R +++L++G  + G
Sbjct: 576 EMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNG 635

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL  A  +L +  + G  PD+  YN+++SG+ + G +  AF+L + M +KG  PN  +Y 
Sbjct: 636 KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYN 695

Query: 318 VLIQALCRMEKMEEAN-----------------------------------RAFVEMERS 342
            LI  LC+  ++E A                                    R F EM   
Sbjct: 696 ALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLK 755

Query: 343 GCEADVVTYTTLISG----------------------------------FCKSRKIDRCY 368
           G   D   Y+ LI G                                  FCKS K+    
Sbjct: 756 GVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEAN 815

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++L+ M+ + + P+ +TY  ++  H K   L+E  +   +M+K   +P+   Y  ++   
Sbjct: 816 QLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGY 875

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
              G   E   +++EM A  + P   ++ VM+   L +G  ++  +   +M+ +G     
Sbjct: 876 NMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKG--GNV 933

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                  L++ L R + V     V   I  +G  L++   +  +      G +  A
Sbjct: 934 SKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGA 989



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 170/393 (43%), Gaps = 16/393 (4%)

Query: 211 VFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
           VF  L+D   K     EA   F    R  F   L     LL    K  KL         M
Sbjct: 168 VFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGM 227

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
            +A    D+  Y +L++ + + G   +   LL EM  KGC P+  +Y V+I  LCR  ++
Sbjct: 228 LEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEV 287

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           +EA      M++ G  ADV TY+ LI GF K ++      +L+ M  +G+ P  + Y  +
Sbjct: 288 DEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTAL 347

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +    ++ +  E   +  EM   G   ++  YN +++  CK G++++A  + NEM    +
Sbjct: 348 IDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGI 407

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P T ++  M+ G+L +       +   EM    L+  P   T   ++N L R   +E A
Sbjct: 408 KPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLV--PTAYTCGMIINGLCRHGSIEDA 465

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             V+  +V+ G + N   +T  I      G  +EA    L +MD   + QPD        
Sbjct: 466 SRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRI-LKVMDKKGV-QPDVLC----- 518

Query: 570 LKKLYNRQIAAEITEKVRKMAAERQITFKMYKR 602
               YN  I      K RKM   +    +M +R
Sbjct: 519 ----YNSVIIGLC--KSRKMEEAKDYLVEMIER 545



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 171/343 (49%), Gaps = 7/343 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I    K    G  + L E M  +   P +IT   +  L+     A  +++A E+ D
Sbjct: 659 YNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIIT---YNALINGLCKAGEIERARELFD 715

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +P  G   +   +  ++D  CK+ ++ +A +LFDEM  +   P    +++L+ G  KEG
Sbjct: 716 GIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEG 775

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              +A  + ++    GF     + N L+ G+ + GK+ +A +LL++M  K   P+  +YT
Sbjct: 776 NTEKALSLFLESVQKGFASTSSL-NALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYT 834

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+   ++EA + FV+M++     + +TYT L+SG+  + +    + + D MI +
Sbjct: 835 ILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAK 894

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I P+ +T+  ++ AH K+ +  + ++L+ +M K G     +  +V+I   C+   + E 
Sbjct: 895 DIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEV 954

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           + V  ++E   L+    +   +V  F   G +  A    K MV
Sbjct: 955 LKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMV 997



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 148/324 (45%), Gaps = 7/324 (2%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           + Y       PN +     Y ALI  L K  +      L + +   K        +  ++
Sbjct: 679 HEYMCQKGISPNII----TYNALINGLCKAGEIERARELFDGI-PGKGLAHNAVTYATII 733

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP 241
             +  +  + KA  + DEM   G  PD FV+  L+D   K  + ++A  LF E  ++   
Sbjct: 734 DGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFA 793

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           S     +L+ G+CK GK++EA  +L  M D   +PD V Y  L+  + + G + +A +  
Sbjct: 794 STSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFF 853

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +M+++   PNA +YT L+       +  E    F EM     E D VT++ +I    K 
Sbjct: 854 VDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKE 913

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSN 420
               +  +++D M+++G   ++    H+++    +KE + E ++++ ++ + G    ++ 
Sbjct: 914 GDHVKTLKLVDDMLKKGGNVSK-NVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLAT 972

Query: 421 YNVVIRLACKLGELKEAVNVWNEM 444
            + ++R   K G++  A  V   M
Sbjct: 973 CSTLVRCFHKAGKMDGAARVLKSM 996



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 140  VYRALIKSLSKMRKFG----AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
            VY ALI      RK G    A+   +E ++K      +T     LM  F  +  V +A +
Sbjct: 763  VYSALIDGC---RKEGNTEKALSLFLESVQK---GFASTSSLNALMDGFCKSGKVIEANQ 816

Query: 196  VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
            +L++M     +PD   +  L+D  CK   +KEA + F +M++R   P+   +T+LL G+ 
Sbjct: 817  LLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYN 876

Query: 255  KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              G+  E   +  +M     EPD V ++ ++  + + G      +L+ +M +KG + + N
Sbjct: 877  MAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKN 936

Query: 315  SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
               VLI  LCR E + E  +   ++E  G    + T +TL+  F K+ K+D    +L SM
Sbjct: 937  VCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSM 996

Query: 375  IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            ++   +P+      ++   +   + E   + + +M
Sbjct: 997  VRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQM 1031


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 195/394 (49%), Gaps = 4/394 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +LI  L +  K    + L E+M  +  Q     V+  L+R F      +   ++  EM  
Sbjct: 486 SLIDGLGRHGKVNDAYMLYEKML-DSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMH 544

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
            GC PD  +    +D + K   +++   LF+E++ +   P +R ++ L++G  K G   +
Sbjct: 545 RGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKD 604

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
              +  +MK+ G   D   YN ++ G+ + GK+  A++LL+EM+ KG  P   +Y  +I 
Sbjct: 605 TYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVID 664

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            L ++++++EA   F E +    + +VV Y++LI GF K  +ID  Y IL+ ++Q+G+ P
Sbjct: 665 GLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 724

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  T+  ++ A  K EE++E +     M+ + C P+   Y++++   CK+ +  +A   W
Sbjct: 725 NTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFW 784

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM+   L P T ++  M+ G    G ++EA + F+     G    P      A++  L 
Sbjct: 785 QEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSG--GIPDSACYNAMIEGLS 842

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            A K   A  ++     KGC +      + + +L
Sbjct: 843 NANKAMDAYILFEETRLKGCRIYSKTCVVLLDAL 876



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 231/472 (48%), Gaps = 10/472 (2%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           LE AL     + +P L   VI R  D   +   Y+ W  ++   +HS + Y AL+  +++
Sbjct: 86  LEDALNTFDEMPQPELVVGVIRRLKDV-RVALHYFRWVERKTKQLHSPEAYNALLMLMAR 144

Query: 151 MRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
            R    +  ++EEM      P   +    + ++  F  +R +++A  V++ M K+   P 
Sbjct: 145 TRNLEYLEQILEEMSMAGFGP---SNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPA 201

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
              +  L+ AL           L  +M+E  ++ ++  FT+L+  + +EG++  A  +L 
Sbjct: 202 YSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLD 261

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +MK   F  D+V+YN  +  + ++GK+  A++   E++ +G  P+  ++T +I  LC+ E
Sbjct: 262 EMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAE 321

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           +++EA   F E++ +     V  Y T+I G+    K +  Y +L+   ++G +P+ + Y 
Sbjct: 322 RVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYN 381

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            I+    +K ++EE + ++ E  K+   P++++YN++I + CK GEL+ A+ V + M+ A
Sbjct: 382 CILTCLGRKGKVEEALRIL-EAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEA 440

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
            L P   +  +M+        L EAC  F  +  +  +  P   T  +L++ L R  KV 
Sbjct: 441 GLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHK--VCTPDSVTFCSLIDGLGRHGKVN 498

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            A  ++  ++  G   N   +T  I + F  G  ++      +MM     P 
Sbjct: 499 DAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPD 550



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 203/432 (46%), Gaps = 3/432 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + ++I  L K  +      L EE+   K  +     +  ++  + S     +A  +L+  
Sbjct: 310 FTSMIGVLCKAERVDEAVELFEELDSNK-SVPCVYAYNTMIMGYGSVGKFNEAYSLLERQ 368

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
            + GC P    + C+L  L +   V+EA ++ + M+    P+L  +  L+   CK G+L 
Sbjct: 369 KRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELE 428

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A  V   MK+AG  P+I+  N ++    +  ++ +A  +   +  K C P++ ++  LI
Sbjct: 429 AALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLI 488

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             L R  K+ +A   + +M  SG   + V YT+LI  F K  + +  ++I   M+ RG  
Sbjct: 489 DGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCS 548

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+ +   + M    K  E+E+   L  E++  G  PDV +Y+++I    K G  K+   +
Sbjct: 549 PDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKL 608

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           + EM+   L   T ++ +++ GF   G + +A +  +EM  +GL   P   T  ++++ L
Sbjct: 609 FYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGL--QPTVVTYGSVIDGL 666

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +  +++ A  ++    +K  +LNV  ++  I      G + EA     ++M   + P  
Sbjct: 667 AKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNT 726

Query: 561 DTFAKLMRGLKK 572
            T+  L+  L K
Sbjct: 727 YTWNCLLDALVK 738



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 163/317 (51%), Gaps = 6/317 (1%)

Query: 159 ALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           AL EE+   K Q +T +V  + IL+         K   ++  EM + G   D   +  ++
Sbjct: 572 ALFEEI---KAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVI 628

Query: 217 DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           D  CK+  V +A +L +EM+ +  +P++  + S++ G  K  +L EA  +  + K    +
Sbjct: 629 DGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVD 688

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
            ++VVY++L+ G+ ++G++ +A+ +L+E+ +KG  PN  ++  L+ AL + E+++EA   
Sbjct: 689 LNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVC 748

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F  M+   C  + VTY+ +++G CK RK ++ +     M ++G+ PN +TY  ++    +
Sbjct: 749 FQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLAR 808

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              + E  +L    +  G +PD + YN +I       +  +A  ++ E         + +
Sbjct: 809 VGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKT 868

Query: 456 FVVMVHGFLGQGCLIEA 472
            VV++       CL +A
Sbjct: 869 CVVLLDALHKADCLEQA 885



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 132/309 (42%), Gaps = 37/309 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L K       + L  EM KE+   + T  + I++  F  +  V KA ++L+EM
Sbjct: 589 YSILIHGLVKGGFSKDTYKLFYEM-KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEM 647

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G +P    +G ++D L K   + EA  LF+E + +    ++  ++SL+ G+ K G++
Sbjct: 648 KTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRI 707

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLL---------------------------------- 285
            EA  +L ++   G  P+   +N LL                                  
Sbjct: 708 DEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIM 767

Query: 286 -SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
            +G  ++ K   AF   +EM+++G  PN  +YT +I  L R+  + EA   F   + SG 
Sbjct: 768 VNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGG 827

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             D   Y  +I G   + K    Y + +    +G      T + ++ A  K + LE+   
Sbjct: 828 IPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAAI 887

Query: 405 LMGEMRKIG 413
           +   +R++ 
Sbjct: 888 VGAVLREMA 896


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 208/436 (47%), Gaps = 9/436 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I    K+ +  A   ++  M+     P ++T   + I++    + R +  A++VLD
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVT---YNIMIGSLCNRRKLGLALKVLD 196

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++    C P    +  L++A      + EA KL +EM  R   P +  + +++ G CKEG
Sbjct: 197 QLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG 256

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  ++  +   G +PD++ YN LL  +   GK  +  +L+ EM  +GC+PN  +Y+
Sbjct: 257 MVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 316

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI +LCR  +++EA      M       D  +Y  LIS  CK  ++D    I+D MI  
Sbjct: 317 ILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 376

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LP+ + Y  I+ A  K     + +E+  ++R +GC P+VS+YN +I      G+   A
Sbjct: 377 GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 436

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + +   M +  + P   ++  ++      G + EA     +M   G    P   +   +L
Sbjct: 437 LGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF--RPTVISYNIVL 494

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L + ++++ A  +++ ++ KGC  N   + + I  +   G   EA      +   DV+
Sbjct: 495 LGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 554

Query: 558 PQPDTFAKLMRGLKKL 573
            Q D+F +L +    L
Sbjct: 555 SQ-DSFKRLNKTFPML 569



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 185/391 (47%), Gaps = 2/391 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+ R   A    +++  L+ +   G  PD  +   L+       ++++A+++ + +    
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           +P +  + +++ G+CK  ++  A  VL +MK  GF PDIV YN ++       K+  A +
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +L ++    C P   +YT+LI+A      + EA +   EM   G   D+ TY  +I G C
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 253

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K   ++R  E++ S+  +G  P+ ++Y  ++ A   + + +E  +L+ EM   GC P+  
Sbjct: 254 KEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 313

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            Y+++I   C+ G + EA++V   M    L+P T S+  ++     +G L  A      M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           +  G L  P       +L +L +      A ++++ +   GC  NV ++   I +L+S G
Sbjct: 374 ISNGCL--PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCG 431

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
               A      M+   V P   T+  L+  L
Sbjct: 432 DRSRALGMVPAMISKGVDPDEITYNSLISCL 462



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 162/352 (46%), Gaps = 3/352 (0%)

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           H   LL   CK GK  E+ Y L  + + G+ PD+++   L+ G+     +  A  ++ E+
Sbjct: 70  HLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EI 128

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
                +P+  +Y  +I   C++ ++E A +    M+  G   D+VTY  +I   C  RK+
Sbjct: 129 LESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKL 188

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
               ++LD ++    +P  +TY  ++ A   +  + E ++L+ EM   G +PD+  YN +
Sbjct: 189 GLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 248

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           IR  CK G ++ A  +   + +    P   S+ +++  FL QG   E  +   EM  RG 
Sbjct: 249 IRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG- 307

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   L++SL R  +++ A  V   ++ K    + Y++   I +L   G +  A
Sbjct: 308 -CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 366

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
                 M+    +P    +  ++  L K  N   A EI  K+R M     ++
Sbjct: 367 IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVS 418



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 43/271 (15%)

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L++  CK+ K +     L+ ++ +G  P+ +    ++      + +E+   +M E+ +  
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESH 132

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PDV  YN VI   CK+  ++ A  V N M+A               GFL         
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKA--------------RGFL--------- 169

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
                         P   T   ++ SL   +K+ +A  V   ++   C   V  +TI I 
Sbjct: 170 --------------PDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIE 215

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAE 592
           +    G + EA     +M+   ++P   T+  ++RG+ K    + AAE IT    K    
Sbjct: 216 ATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKP 275

Query: 593 RQITFKMYKR----RGERDLKEKAKKQVDGR 619
             I++ +  R    +G+ D  EK   ++  R
Sbjct: 276 DVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 198/394 (50%), Gaps = 8/394 (2%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+ R   A    +++  L+ M   G  PD  +   L+     + ++ +A ++ + +    
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KP +  + +L+ G+ K  +L  A  VL +MK  GF PD+V YN ++  +   GK+  A E
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           + +E+ +  C+P   +YT+LI+A      ++ A +   EM   G E D +TY  +I G C
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC 254

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           K   +D+ +E+L S+  RG  P+ +TY   L  +L+  K  E E   +L+ EM  IGC P
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGE---KLISEMISIGCKP 311

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           +V  ++++I   C+ G+++EAVN+   M+   L P    +  ++ GF  +G L  A E+ 
Sbjct: 312 NVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFL 371

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           + M+  G L  P       ++  L R  K + A +V+  +   GC  NV ++     +L+
Sbjct: 372 EYMISDGCL--PDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALW 429

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           S+G    A    L +++  + P   T+  L+  L
Sbjct: 430 SSGDRYRALEMILKLLNQGIDPDEITYNSLISCL 463



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 10/408 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  +      +++ M+     P ++T   + I++  F S   +  A+E+ +
Sbjct: 141 YNALISGFIKANQLENANRVLDRMKSRGFLPDVVT---YNIMIGSFCSRGKLDLALEIFE 197

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           E+ K  CEP    +  L++A   +  +  A KL DEM  +  +P    + +++ G CKE 
Sbjct: 198 ELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEM 257

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  +L  +   G +PDI+ YN LL      GK ++  +L+ EM   GC PN  +++
Sbjct: 258 MVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHS 317

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LCR  K+EEA      M+  G + D   Y  LI+GFC+  ++D   E L+ MI  
Sbjct: 318 ILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISD 377

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G LP+ + Y  IM    +  + ++ +E+  ++ ++GC P+VS+YN +       G+   A
Sbjct: 378 GCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRA 437

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTLKAL 496
           + +  ++    + P   ++  ++      G + EA E   +M  GR     P   +   +
Sbjct: 438 LEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGR---YRPNVVSYNII 494

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  L +  +   A +V + +  KGC+ N   + + I  +  +G   EA
Sbjct: 495 LLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEA 542



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 173/357 (48%), Gaps = 6/357 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI++            L++EM  +  +P  +T   +  ++R      MV KA E+L 
Sbjct: 211 YTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLT---YNAIIRGMCKEMMVDKAFELLR 267

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            +   GC+PD   +  LL  L       E  KL  EM     KP++   + L+   C++G
Sbjct: 268 SLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDG 327

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  +L  MK+ G +PD   Y+ L++G+ + G++  A E L+ M   GC P+  +Y 
Sbjct: 328 KVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYN 387

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  LCR  K ++A   F +++  GC  +V +Y TL S    S    R  E++  ++ +
Sbjct: 388 TIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQ 447

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+++TY  ++    +   ++E +EL+ +M+     P+V +YN+++   CK+    +A
Sbjct: 448 GIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDA 507

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           + V   M      P   ++++++ G    G   EA E    + G   +S   +  L 
Sbjct: 508 IEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHGMNAISEDSFNRLN 564


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 216/440 (49%), Gaps = 21/440 (4%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           P L   L  +G+   P L   V +R G +  L +  ++WA  +P +     ++ A++ +L
Sbjct: 109 PALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKLFDAVVNAL 168

Query: 149 SKMRKFGAVWALM-------EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD--- 198
           +K R+F A W L+        E   EK +L++   F I++RR+A A M K AI   +   
Sbjct: 169 AKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRTYEFAT 228

Query: 199 ---EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF---DEMRERFKPSLRHFTSLLYG 252
               +   G E    +   L+D+LCK  SV+EA++ F    E+   + PS+R +  +L G
Sbjct: 229 NNKSIVDSGSEMS--LLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNG 286

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           W +  KL + + +  +MK+    P +V Y  L+ GY +M ++  A E++ +M ++G  PN
Sbjct: 287 WFRLRKLKQGERLWAEMKE-NMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPN 345

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A  Y  +I AL    + +EA                 TY +L+ GFCK+  +    +IL 
Sbjct: 346 AIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILK 405

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI RG LP+  TY +      +  ++EE + L  ++ + G  PD   Y++++++ C+  
Sbjct: 406 MMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEE 465

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +L  AV V  EM          +  ++VH       L EA   F++M+ RG++  PQY T
Sbjct: 466 KLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIV--PQYLT 523

Query: 493 LKALLNSLLRAQKVEMAKDV 512
            + +   L +    EMA+ +
Sbjct: 524 FQRMKADLKKQGMTEMAQKL 543



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 156/307 (50%), Gaps = 20/307 (6%)

Query: 124 YYMWASK-QPNYVHSYDVYRALIKSLSKMRKFGA---VWALMEEMRKEKPQLITTEVFVI 179
           Y++W  +   ++V S  VY  ++    ++RK      +WA M+E    +P ++T   +  
Sbjct: 262 YFLWKKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEMKE--NMRPTVVT---YGT 316

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+  +   R V+KA+E++ +M K G  P+  V+  ++DAL +    KEA      M ERF
Sbjct: 317 LVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALG----MLERF 372

Query: 240 K-----PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                 P+   + SL+ G+CK G LV A  +L  M   GF P    YN     +++  K+
Sbjct: 373 HVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKI 432

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +   L  ++ + G  P+  +Y +L++ LC  EK++ A +   EM  +G + D+ T T L
Sbjct: 433 EEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTML 492

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE-LMGEMRKIG 413
           +   CK R+++  +   + MI+RGI+P  LT+   M A  KK+ + E  + L   M  + 
Sbjct: 493 VHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTF-QRMKADLKKQGMTEMAQKLCKLMSSVP 551

Query: 414 CVPDVSN 420
             P++ N
Sbjct: 552 YSPNLPN 558


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 208/475 (43%), Gaps = 55/475 (11%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           RP    RV+  CG A                   +   Y AL     ++ +      +++
Sbjct: 103 RPADAARVVEACGSAA------------------TAVTYSALADGYCRVGRLDEARRVVD 144

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            M    P L +   +  LM        V+ A+ +LD M   GC PD   +  LL+A CK 
Sbjct: 145 GM----PVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKG 200

Query: 223 SSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
              ++A +L D MR E   P+   +  ++ G C+EG +  A+ +L  +   G  P+ V Y
Sbjct: 201 RGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNY 260

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N +L G    G+  D  EL+ EM  + C P+  + +V+I +LC+    + A R   +M +
Sbjct: 261 NTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSK 320

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
             C A++VTY  ++SG C+   +D    +L +M   G  PN  TY  ++      E  E+
Sbjct: 321 HDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWED 380

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             +LM +M +  C+PD+  +N +I   C+ G   +AV V+ +M      P + ++  ++ 
Sbjct: 381 AEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIE 440

Query: 462 GFLGQGCLIEACEYFKEMVGRG--------LLS------------------------APQ 489
           G    G + ++ E   EM  +G        LL+                        +PQ
Sbjct: 441 GLAKTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQ 500

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                 +L  L R  K + A D+ S +V+ GC  +   ++I I  L   G++KEA
Sbjct: 501 AVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEA 555



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 119/247 (48%), Gaps = 7/247 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++  L +         L+  M+ +  KP + T   + IL++   +A   + A +++ 
Sbjct: 330 YNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFT---YNILVKGLCNAERWEDAEDLMA 386

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M +  C PD   F  ++  LC+     +A ++F +M E+   P+   ++S++ G  K G
Sbjct: 387 KMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTG 446

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ ++  +L +M   GF P+I  Y+ L     +  K+ +A +++ +++  G  P A  Y 
Sbjct: 447 KMEQSLELLNEMGSKGFNPEIN-YHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYN 505

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  LCR  K ++A      M   GC  D  TY+ LI G      +    E+L ++  R
Sbjct: 506 TILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSSR 565

Query: 378 GILPNQL 384
            ++ + L
Sbjct: 566 DVIVDNL 572



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD+ + N L+    + G+  DA  +++     G    A +Y+ L    CR+ +++EA R 
Sbjct: 86  PDVALANRLVRDLCRRGRPADAARVVEAC---GSAATAVTYSALADGYCRVGRLDEARRV 142

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
              M           Y  L+   C   ++     +LD+M+ RG  P+ +TY  ++ A  K
Sbjct: 143 VDGMP---VLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACK 199

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
                + +EL+  MR  GC P    YNV++   C+ G++  A  + N + +   +P T +
Sbjct: 200 GRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVN 259

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ G    G   +  E   EM        P   TL  +++SL +    + A  +   
Sbjct: 260 YNTVLKGLRTAGRWEDVEELIAEMFSEN--CPPSEATLSVVISSLCQEGLFQRAIRLLEK 317

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +    C  N+  +   +  L   GHV  A     +M      P   T+  L++GL
Sbjct: 318 MSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGL 372


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 187/362 (51%), Gaps = 5/362 (1%)

Query: 101 VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWAL 160
           +L P    ++I    DA  L    +  AS+QP + HSY  Y  LI  L + R+F  +  L
Sbjct: 97  MLTPARVHKLIASQTDA-LLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGL 155

Query: 161 MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           +++MRK+     T  +FV ++  +    M  +AI+   +M ++G EP    F  LL  L 
Sbjct: 156 IQQMRKDGCPY-TPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLI 214

Query: 221 KNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           ++  ++ A  LF ++ E    P+ R +  L+   C   KL  A ++  +M   G  PD+ 
Sbjct: 215 EHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVE 274

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y+ L+ G  +  ++  A  +L EM  KG  P+A +Y  L+ +LCR   + EA R   +M
Sbjct: 275 TYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKM 334

Query: 340 ERSGCEADVVTYTTLISGFCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           +  GC  DV+ Y T+I+GFC+  R +D C +IL  M + G LPN L+Y  ++     + +
Sbjct: 335 KVMGCNPDVINYNTVITGFCREGRALDAC-QILRDMPENGCLPNALSYRTLVNGLCNEGK 393

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            +E  + + EM   G +P +S Y+++I   C  G++ EA  V   M   +L+P   ++ V
Sbjct: 394 FDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSV 453

Query: 459 MV 460
           ++
Sbjct: 454 LL 455



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 160/349 (45%), Gaps = 9/349 (2%)

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER---FKPSL 243
           A +  +  EV    P  G +     +  L+  L +    K    L  +MR+    + P L
Sbjct: 113 ALLAMEIFEVASRQP--GFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGL 170

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F  ++  + + G   EA     QM + G+EP    +N LL    +   +  A  L K+
Sbjct: 171 --FVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKK 228

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           +   G  PN  +Y +LI+A C  +K+  A   F +M + GC  DV TY+ L+ G C+  +
Sbjct: 229 LHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQ 288

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +     +LD M+ +G +P+ LTY  ++ +  +K  L E   L+ +M+ +GC PDV NYN 
Sbjct: 289 VKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNT 348

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           VI   C+ G   +A  +  +M      P   S+  +V+G   +G   EA ++ +EM+  G
Sbjct: 349 VITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNG 408

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            +  P       L+  L    KV  A +V   +  +    +   W++ +
Sbjct: 409 FI--PHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLL 455



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T  + IL+R    +  +  A  + ++M K GC PD   +  L+  LC+ S VK A  + D
Sbjct: 238 TRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLD 297

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EM  + + P    + +LL   C++  L EA  +L +MK  G  PD++ YN +++G+ + G
Sbjct: 298 EMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREG 357

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  DA ++L++M   GC PNA SY  L+  LC   K +EA     EM  +G    +  Y 
Sbjct: 358 RALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYH 417

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY--LHIMLAHEKKEELEECVELMGE 408
            LI+G C   K+    E+L  M ++ + P++ T+  L + +  + + E  E V+ + E
Sbjct: 418 LLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICEDSQTEARELVDKLSE 475



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 10/334 (2%)

Query: 240 KPSLRHFTSLLYGW-CKEGKLVEAKY---VLVQMKDAG--FEPDIVVYNNLLSGYAQMGK 293
           +P  +H  S  +   CK G+  + K    ++ QM+  G  + P + V  +++  Y ++G 
Sbjct: 126 QPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFV--DIIEIYGEVGM 183

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A +   +M   G +P A  + VL+  L   + +E A   F ++   G   +  TY  
Sbjct: 184 PNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNI 243

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI   C S K+   Y + + M ++G +P+  TY  +M    +K +++  + ++ EM   G
Sbjct: 244 LIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKG 303

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
            VPD   YN ++   C+   L+EA  + ++M+    +P   ++  ++ GF  +G  ++AC
Sbjct: 304 YVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDAC 363

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           +  ++M   G L  P   + + L+N L    K + AKD    +++ G   ++  + + I 
Sbjct: 364 QILRDMPENGCL--PNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLIT 421

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            L + G V EAC   + M    + P   T++ L+
Sbjct: 422 GLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLL 455



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI++     K    + L  +M K+   +   E + ILM+       VK A+ VLDE
Sbjct: 240 TYNILIRAHCHSDKLSHAYFLFNKMHKQG-CIPDVETYSILMQGLCRKSQVKTALGVLDE 298

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G  PD   +  LL++LC+  +++EA +L  +M+     P + ++ +++ G+C+EG+
Sbjct: 299 MLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGR 358

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
            ++A  +L  M + G  P+ + Y  L++G    GK  +A + ++EM   G  P+ + Y +
Sbjct: 359 ALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHL 418

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           LI  LC   K+ EA    V M +        T++ L+   C+  + +
Sbjct: 419 LITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICEDSQTE 465



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 112/266 (42%), Gaps = 2/266 (0%)

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           R+ G   + ++Y  LI  L R  + +       +M + GC      +  +I  + +    
Sbjct: 125 RQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMP 184

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +   +    M++ G  P    +  +++   + + LE  + L  ++ + G  P+   YN++
Sbjct: 185 NEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNIL 244

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           IR  C   +L  A  ++N+M      P  +++ +++ G   +  +  A     EM+ +G 
Sbjct: 245 IRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGY 304

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           +  P   T   LLNSL R   +  A  + S +   GC  +V  +   I      G   +A
Sbjct: 305 V--PDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDA 362

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGL 570
           C    DM +   +P   ++  L+ GL
Sbjct: 363 CQILRDMPENGCLPNALSYRTLVNGL 388


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 217/448 (48%), Gaps = 9/448 (2%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           Y+   S    + H++  Y  +I  L +  +   V  L+++M+ E     + E+F  +++ 
Sbjct: 60  YFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVP-CSQELFQFVIKC 118

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           +  + + ++ +++   + ++GCEP   ++  +LDAL   +  K    L++ M+ E  +P+
Sbjct: 119 YRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPN 178

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +  LL   C+ GK+  A  +LV+M + G +PD V Y  ++S   ++G +  A EL  
Sbjct: 179 VFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAM 238

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +      +P    Y  LI  +C+  + +EA     EM   G + +V++Y+T+IS      
Sbjct: 239 KF-----EPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMG 293

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            ++    +   M  RG  PN  T+  ++     +  + + V L   M + G  P+V  YN
Sbjct: 294 NVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYN 353

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I   C  G + EA++VWN+ME  S+ P   ++  +++GF   G L+ ACE + +M+  
Sbjct: 354 TLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINC 413

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G    P       +++ L +    + A D+   +++ GC   V  +  +I  L   G V+
Sbjct: 414 G--CRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVE 471

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
            A +    M   + +P   T+ +L+ GL
Sbjct: 472 WAMNVLDQMEKYECLPNIRTYNELLDGL 499



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 173/370 (46%), Gaps = 11/370 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S  +Y  ++ +L     F  + AL   M+ E  +P + T   + +L++       V  A 
Sbjct: 143 SVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFT---YNVLLKALCQNGKVDGAC 199

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
           ++L EM   GC+PD+  +  ++ ++CK   V +A     E+  +F+P +  + +L++G C
Sbjct: 200 KLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAR----ELAMKFEPVVPVYNALIHGVC 255

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           KE +  EA  ++ +M D G +P+++ Y+ ++S  + MG +  +  +   M  +GC PN  
Sbjct: 256 KECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQ 315

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++T LI+      ++ +A   +  M R G   +VV Y TLI G C    +D    + + M
Sbjct: 316 TFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQM 375

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            +  I PN  TY  I+    K  +L    E   +M   GC P+V  Y  ++ + C++   
Sbjct: 376 EKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMF 435

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            +A ++ + M +    P   +F   + G    G +  A     +M     L  P   T  
Sbjct: 436 DQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECL--PNIRTYN 493

Query: 495 ALLNSLLRAQ 504
            LL+ L RA 
Sbjct: 494 ELLDGLFRAN 503



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 194/425 (45%), Gaps = 7/425 (1%)

Query: 148 LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
           +S M K G V    E   K +P      V+  L+         K+A ++++EM   G +P
Sbjct: 221 ISSMCKLGDVDKARELAMKFEP---VVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDP 277

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           +   +  ++  L    +V+ +  +F  M  R  +P+++ FTSL+ G+   G++ +A  + 
Sbjct: 278 NVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLW 337

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
             M   G  P++V YN L+ G    G M +A  +  +M +    PN  +Y+ +I    + 
Sbjct: 338 NLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKS 397

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
             +  A   + +M   GC  +VV YT ++   C+    D+ ++++D+MI  G  P  +T+
Sbjct: 398 GDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITF 457

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
            + +    +   +E  + ++ +M K  C+P++  YN ++    +    +EA  +  E+E 
Sbjct: 458 NNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEE 517

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             +     ++  +++GF   G   +  +   +M+  G+       T+   +N+  +  KV
Sbjct: 518 RKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGI--KLDTITVNTTVNAYCKLGKV 575

Query: 507 EMAKDVWSCI-VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           + A  V   I   K    ++   TI +  + +    +EA  Y  +M+   + P   T+  
Sbjct: 576 KTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNV 635

Query: 566 LMRGL 570
           L+RG 
Sbjct: 636 LVRGF 640



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 143/343 (41%), Gaps = 8/343 (2%)

Query: 255 KEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           +E  +V +      + ++G F+   + Y  ++    +  +M     LL++M+ +    + 
Sbjct: 50  QEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQ 109

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
             +  +I+   R    E+  + F  +   GCE  V  Y  ++              + ++
Sbjct: 110 ELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNN 169

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G+ PN  TY  ++ A  +  +++   +L+ EM   GC PD  +Y  VI   CKLG+
Sbjct: 170 MKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGD 229

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           + +A  +     A    P    +  ++HG   +    EA +   EMV RG+   P   + 
Sbjct: 230 VDKAREL-----AMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGV--DPNVISY 282

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             +++ L     VE++  V+  +  +GC  NV  +T  I   F  G V +A      M+ 
Sbjct: 283 STVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIR 342

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
             V P    +  L+ GL    N   A  +  ++ K +    +T
Sbjct: 343 EGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVT 385


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 204/422 (48%), Gaps = 6/422 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP L+T   F  ++        V++A+ V +++ ++   PD F +  L+   C+N  + +
Sbjct: 194 KPSLLT---FNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDK 250

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A ++FD M ++   P+   +++L+ G C EG++ EA  +L +M + G EP +  Y   +S
Sbjct: 251 AFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPIS 310

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
               +G++ DA  L++ M +KGC P+  +YT +I  L R  KME A   + +M + G   
Sbjct: 311 SLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVP 370

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + VTY  LI+  C   +     +I D M   G L N  TY  I+      +++E+ + + 
Sbjct: 371 NTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVF 430

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M K G  P V  YN +I    K G L  A      M+ ++  P   ++  ++ GF   
Sbjct: 431 NKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKG 490

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A  +F EM+  G+  +P   T  A+++   +  K+++A  ++  +   GC  ++ 
Sbjct: 491 GKLDSATSFFYEMLKCGI--SPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIE 548

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            +   I  L       EA  +C  M +  + P   T+  L+ GL K     +A +I  ++
Sbjct: 549 TYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEM 608

Query: 587 RK 588
            K
Sbjct: 609 EK 610



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 187/425 (44%), Gaps = 50/425 (11%)

Query: 87  RLPKLELALQHSGVVLRPGLTER------VINRCGDAGNLG--YRYYMWASKQPNYVHSY 138
           R  K+ELA+     +L+ GL         +IN     G  G   + + W        ++ 
Sbjct: 349 RAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANA- 407

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
             Y  +IK L  M        +  +M K+ P         +++       +   A   L 
Sbjct: 408 QTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYL-NNATRFLY 466

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M +  CEPDE  +  L+   CK   +  A   F EM +    P+   +T+++ G+CKEG
Sbjct: 467 MMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEG 526

Query: 258 KL-----------------------------------VEAKYVLVQMKDAGFEPDIVVYN 282
           K+                                    EA+    +M + G +P+ + Y 
Sbjct: 527 KIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYT 586

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L++G  +      AF++  EM +K C PNA++YT LI  LC+  K++ A R    +  +
Sbjct: 587 SLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER----LTEN 642

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GCE  + TY+TL+SG C+  + +   +++++M ++G+ P+   Y  +++AH K  +++  
Sbjct: 643 GCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCA 702

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           +E+   M   G  P +  Y V+I   C +   +EA+N++  +     +     + V+V G
Sbjct: 703 LEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDG 762

Query: 463 FLGQG 467
            L +G
Sbjct: 763 LLQEG 767



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 188/411 (45%), Gaps = 12/411 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAI 194
           S   Y A+I  L +  K      +  +M KE   P  +T   +  L+    +      A+
Sbjct: 336 SVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVT---YNALINELCTEGRFGIAL 392

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
           ++ D M  +G   +   +  ++  L     +++A  +F++M ++   P++  + +L+   
Sbjct: 393 KIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVEN 452

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            K G L  A   L  MK++  EPD   Y  L+SG+ + GK+  A     EM + G  PN 
Sbjct: 453 LKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQ 512

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +YT +I   C+  K++ A   F  ME +GC A + TY  +ISG  K  +     +    
Sbjct: 513 WTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAK 572

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M ++G+ PN +TY  ++    K        ++  EM K  C+P+   Y  +I   C+ G+
Sbjct: 573 MTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK 632

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A      +      P  D++  +V G   +G   EA +  + M  +GL  +P     
Sbjct: 633 VDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGL--SPSMEIY 686

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +LL +  ++ KV+ A ++++ +  KG + +++ + + I +L      +EA
Sbjct: 687 CSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEA 737



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 161/334 (48%), Gaps = 2/334 (0%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F  +L  F +LL    K   +  A+ V  Q+  +G +P ++ +N +++   + GK+ +A 
Sbjct: 158 FGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAV 217

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            +  ++ +    P+A +YT LI   CR  K+++A   F  M + GC  + VTY+TLI+G 
Sbjct: 218 LVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGL 277

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C   +I    ++L+ M ++GI P   TY   + +      +++ + L+  M K GC P V
Sbjct: 278 CNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSV 337

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y  +I    + G+++ A+ ++++M    L P T ++  +++    +G    A + F  
Sbjct: 338 QTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDW 397

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M G G L+  Q  T   ++  L     +E A  V++ ++  G    V  +   I      
Sbjct: 398 MEGHGTLANAQ--TYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKR 455

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G++  A  +   M +++  P   T+ +L+ G  K
Sbjct: 456 GYLNNATRFLYMMKESNCEPDERTYCELISGFCK 489



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 144/310 (46%), Gaps = 4/310 (1%)

Query: 267 VQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           +   D+G F   +  +N LL    +   +T A  +  ++   G  P+  ++  +I  LC+
Sbjct: 150 ISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCK 209

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
             K++EA   F ++ +     D  TYT+LI G C++RK+D+ +E+ D M++ G  PN +T
Sbjct: 210 KGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVT 269

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++     +  + E ++++ EM + G  P V  Y V I   C +G + +A+N+   M 
Sbjct: 270 YSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMG 329

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
               SP   ++  ++ G    G +  A   + +M+  GL+  P   T  AL+N L    +
Sbjct: 330 KKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLV--PNTVTYNALINELCTEGR 387

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
             +A  ++  +   G   N   +   I  LF    +++A      M+     P   T+  
Sbjct: 388 FGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNT 447

Query: 566 LM-RGLKKLY 574
           L+   LK+ Y
Sbjct: 448 LIVENLKRGY 457



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 148/311 (47%), Gaps = 6/311 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y A+I    K  K     +L E M +E     + E +  ++   +      +A +   +
Sbjct: 514 TYTAMIDGYCKEGKIDVALSLFERM-EENGCSASIETYNAIISGLSKGNRFSEAEKFCAK 572

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + G +P+   +  L++ LCKN++   A K+F EM ++   P+   +TSL+YG C+EGK
Sbjct: 573 MTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK 632

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +  A+    ++ + G EP I  Y+ L+SG  + G+  +A +L++ M+ KG  P+   Y  
Sbjct: 633 VDAAE----RLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCS 688

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+ A C+  K++ A   F  M   G +  +  Y  LI   C   + +    I  S++++ 
Sbjct: 689 LLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQ 748

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              + + +  ++    ++ + + C++ +  M    C P +  Y ++ R   K+G+     
Sbjct: 749 WNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKSIGTD 808

Query: 439 NVWNEMEAASL 449
            + N +   SL
Sbjct: 809 QIGNRLREVSL 819



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 124/260 (47%), Gaps = 10/260 (3%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S + Y A+I  LSK  +F        +M ++  +P  IT   +  L+           A 
Sbjct: 546 SIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTIT---YTSLINGLCKNTATNLAF 602

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
           ++  EM K  C P+   +  L+  LC+   V  A +L +   E   P++  +++L+ G C
Sbjct: 603 KIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCE---PTIDTYSTLVSGLC 659

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           +EG+  EA  ++  MK+ G  P + +Y +LL  + +  K+  A E+   M  KG  P+  
Sbjct: 660 REGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLF 719

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            Y VLI ALC + + EEA   F  + +    +D++ +T L+ G  +    D C + L  M
Sbjct: 720 IYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLM 779

Query: 375 IQRGILPNQLTYLHIMLAHE 394
             R   P+  TY  I+LA E
Sbjct: 780 ESRNCTPSLHTY--IILARE 797


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 209/436 (47%), Gaps = 9/436 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI  L K+        L  EM     KP +   + +  L+  +   + ++KA E+L 
Sbjct: 375 YYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDI---QTYNCLIEGYYKVQNMEKAYELLI 431

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           E+ K     + ++ G +++ LC    +  A +LF EM     KP++  +T+++ G  KEG
Sbjct: 432 EIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEG 491

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA  +L  MKD G  PD+  YN ++ G+ + GKM +    L EM  KG  PN  +Y 
Sbjct: 492 RFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYG 551

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             I   CR  +M+ A R+F+EM  SG   + V  T LI G+CK     + +     M+ +
Sbjct: 552 AFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQ 611

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LP+  T+  ++    K  +L+E + +  E+   G VPDV  Y  +I   CK G+LK A
Sbjct: 612 GVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAA 671

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + ++M    ++P   ++  +++G    G + +A E F  +  +GL  A    T   ++
Sbjct: 672 FELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGL--ARNSVTYSTII 729

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               ++  +  A  ++  +   G   + + +   I      G+ ++A S  L M++  + 
Sbjct: 730 AGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIA 789

Query: 558 PQPDTFAKLMRGLKKL 573
             P  F  L+ G  KL
Sbjct: 790 STP-AFNALIDGFFKL 804



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 216/459 (47%), Gaps = 23/459 (5%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
           NL    YM  +      H  D+ RA     +++ +    W L       KP ++   ++ 
Sbjct: 437 NLTANAYMCGAIVNGLCHCGDLTRA-----NELFQEMISWGL-------KPNIV---IYT 481

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
            +++        ++AI++L  M   G  PD F +  ++   CK   ++E      EM  +
Sbjct: 482 TIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAK 541

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             KP++  + + ++G+C+ G++  A+   ++M D+G  P+ V+  +L+ GY + G  T A
Sbjct: 542 GLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKA 601

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           F   + M  +G  P+  +++VLI  L +  K++EA   F E+   G   DV TYT+LIS 
Sbjct: 602 FAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISN 661

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK   +   +E+ D M ++GI PN +TY  ++    K  E+ +  EL   + + G   +
Sbjct: 662 LCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARN 721

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              Y+ +I   CK   L EA  +++ M+   + P +  +  ++ G    G   +A   F 
Sbjct: 722 SVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFL 781

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            MV  G+ S P +    AL++   +  K+  A  +   +V      N   +TI I    +
Sbjct: 782 GMVEEGIASTPAF---NALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCT 838

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
            G++KEA    ++M   +VMP   T+  L+ G    YNR
Sbjct: 839 VGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHG----YNR 873



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 235/539 (43%), Gaps = 44/539 (8%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFAS 186
            +K   ++       +L K L K  +    W + + M     P + T   +  L+  +  
Sbjct: 188 GAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYT---YTNLINAYCR 244

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
              V++   VL +M + GC P+   +  ++  LC+   V EA +L   M  +   P    
Sbjct: 245 VGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYI 304

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +L+ G+C++ +  E K +L +M   G +PD V Y  L++G+ +   +  AF++ +EM 
Sbjct: 305 YATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMF 364

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +    N  +Y  LI  LC++  +E+A   F EM   G + D+ TY  LI G+ K + ++
Sbjct: 365 ARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNME 424

Query: 366 RCYEIL-----------------------------------DSMIQRGILPNQLTYLHIM 390
           + YE+L                                     MI  G+ PN + Y  I+
Sbjct: 425 KAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIV 484

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               K+   EE ++++G M+  G  PDV  YN VI   CK G+++E  +   EM A  L 
Sbjct: 485 KGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLK 544

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++   +HG+   G +  A   F EM+  G+  AP       L++   +      A 
Sbjct: 545 PNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGI--APNDVICTDLIDGYCKDGNTTKAF 602

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             + C++ +G   +V   ++ IH L  NG ++EA     +++D  ++P   T+  L+  L
Sbjct: 603 AKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNL 662

Query: 571 KKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKE--KAKKQVDGRKRRARQRR 627
            K  + + A E+ + + K      I        G   L E  KA++  DG   +   R 
Sbjct: 663 CKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARN 721



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/539 (23%), Positives = 239/539 (44%), Gaps = 38/539 (7%)

Query: 58  NNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVI--NRCG 115
           +N+  T+   N+  + V++I  +LK+ + +       L +    L P +   VI  N+  
Sbjct: 29  SNSFSTNADTNQSDNTVKEITSLLKQKNWQFLIESSPLPNK---LNPDVVFLVIKQNQVI 85

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM---RKEKPQLI 172
           D   L + ++ W + +  +  +   +  L   L     FG    ++E M   R    +++
Sbjct: 86  DPKRL-HGFFNWVNSRTVFSQNLSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKIL 144

Query: 173 TTEV-----------------FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFG-- 213
            + +                 F IL+  +     + +A+ V       G + +EF+ G  
Sbjct: 145 DSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVF-----LGAKTNEFIVGLA 199

Query: 214 ---CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
               L   L K + V+   K++  M     P +  +T+L+  +C+ GK+ E K+VL  M+
Sbjct: 200 CCNSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDME 259

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           + G  P++V Y+ +++G  + G + +A EL + M  KG  P+   Y  LI   CR ++  
Sbjct: 260 EKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRST 319

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           E      EM   G + D V YT LI+GF K   I   +++ + M  R I  N  TY  ++
Sbjct: 320 EGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALI 379

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               K  +LE+  +L  EM  +G  PD+  YN +I    K+  +++A  +  E++  +L+
Sbjct: 380 HGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLT 439

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
                   +V+G    G L  A E F+EM+  GL   P       ++  L++  + E A 
Sbjct: 440 ANAYMCGAIVNGLCHCGDLTRANELFQEMISWGL--KPNIVIYTTIVKGLVKEGRFEEAI 497

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            +   +  +G   +V+ +   I      G ++E  SY ++M+   + P   T+   + G
Sbjct: 498 KILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHG 556



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 229/519 (44%), Gaps = 48/519 (9%)

Query: 113 RCGD---AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169
            CGD   A  L      W  K PN V    +Y  ++K L K  +F     ++  M   K 
Sbjct: 454 HCGDLTRANELFQEMISWGLK-PNIV----IYTTIVKGLVKEGRFEEAIKILGVM---KD 505

Query: 170 QLITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           Q ++ +VF    ++  F  A  +++    L EM   G +P+ + +G  +   C+   ++ 
Sbjct: 506 QGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQA 565

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A + F EM +    P+    T L+ G+CK+G   +A      M D G  PD+  ++ L+ 
Sbjct: 566 AERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIH 625

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G ++ GK+ +A  +  E+  KG  P+  +YT LI  LC+   ++ A     +M + G   
Sbjct: 626 GLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINP 685

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           ++VTY  LI+G CK  +I +  E+ D + ++G+  N +TY  I+  + K   L E  +L 
Sbjct: 686 NIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLF 745

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M+ +G  PD   Y  +I   CK G  ++A++++  M    ++  T +F  ++ GF   
Sbjct: 746 HGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIAS-TPAFNALIDGFFKL 804

Query: 467 GCLIEACEYFKEMVGRGLLS---------------------------------APQYGTL 493
           G LIEA +  ++MV   +                                    P   T 
Sbjct: 805 GKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTY 864

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            +LL+   R  +      ++  +V +G + +  AW++ + +    G+  +A     DM+ 
Sbjct: 865 TSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLS 924

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             V    + +  L+  L K  N     ++ ++V K  ++
Sbjct: 925 EGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSK 963



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 5/314 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V     Y ALI  L K+ +      L + +  EK     +  +  ++  +  +  +
Sbjct: 684 NPNIV----TYNALINGLCKLGEIAKARELFDGI-PEKGLARNSVTYSTIIAGYCKSANL 738

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
            +A ++   M   G  PD FV+  L+D  CK  + ++A  LF  M E    S   F +L+
Sbjct: 739 TEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALI 798

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+ K GKL+EA  ++  M D    P+ V Y  L+  +  +G + +A +L  EM+++   
Sbjct: 799 DGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVM 858

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +YT L+    R+ +  E    F EM   G + D + ++ ++    K     +  ++
Sbjct: 859 PNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKL 918

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +D M+  G+   +  Y  ++ A  K   L E ++++ E+ K G    ++    ++    +
Sbjct: 919 VDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHR 978

Query: 431 LGELKEAVNVWNEM 444
            G   EA+ V   M
Sbjct: 979 AGRTDEALRVLESM 992



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 121/268 (45%), Gaps = 37/268 (13%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169
           +I+ C  AGN      ++       + S   + ALI    K+ K    + L+E+M     
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNH- 821

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
             IT                                 P+   +  L++  C   ++KEA 
Sbjct: 822 --IT---------------------------------PNHVTYTILIEYHCTVGNIKEAE 846

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +LF EM++R   P++  +TSLL+G+ + G+  E   +  +M   G +PD + ++ ++  +
Sbjct: 847 QLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAH 906

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            + G    A +L+ +M  +G +   N YT+LI ALC+   + E  +   E+E+ G +  +
Sbjct: 907 LKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSL 966

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            T  TL+  F ++ + D    +L+SM++
Sbjct: 967 ATCGTLVCCFHRAGRTDEALRVLESMVR 994


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 208/433 (48%), Gaps = 7/433 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +   I+ L +        ++++ + +E   P ++T    +  + + ++   V +A + L 
Sbjct: 254 FNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSN---VVEAEKYLH 310

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEG 257
           ++   G EPD F +  L+D  CK   ++ A K+    + + F P    + SL+ G C+  
Sbjct: 311 KLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQND 370

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  A  +       G +P +++YN L+ G  Q G +  A +++ EM   GC  +  +Y 
Sbjct: 371 EIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYN 430

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  LC+M  + +AN    +    G   DV T+ TLI G+CK  K++   +IL+ M   
Sbjct: 431 LVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSH 490

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++    K  + E+ +E    M + GCVP+   YN++    CK G++ EA
Sbjct: 491 GVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEA 550

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +++ +E+    ++P T SF  ++ GF   G L  A + F+ M G     +    T   ++
Sbjct: 551 LDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRM-GEQYKVSHTTATYNIMI 609

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N+      + M + ++  +   GC  + Y + + I      G+      + L+M++   +
Sbjct: 610 NAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFI 669

Query: 558 PQPDTFAKLMRGL 570
           P   TF +++  L
Sbjct: 670 PSLTTFGRVINCL 682



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 196/430 (45%), Gaps = 38/430 (8%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           F I ++ F   +    A+ +L+ M   GC+ +   +  ++    + +   EA +LF++M 
Sbjct: 149 FTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDML 208

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R    P +  F  LL+  CK+G++ E++ +L ++   G   ++  +N  + G  + G ++
Sbjct: 209 RIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLS 268

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A  +L  + R+G  P+  +Y  LI  LC+   + EA +   ++   G E D  TY TLI
Sbjct: 269 GAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLI 328

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE--------------- 400
            G+CK   +    +IL   I +G +P++ TY  ++    + +E++               
Sbjct: 329 DGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLK 388

Query: 401 --------------------ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
                               + +++M EM + GC  D+  YN+VI   CK+G + +A N+
Sbjct: 389 PTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNL 448

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            N+  A    P   +F  ++ G+  Q  +    +   +M   G+   P   T  ++LN L
Sbjct: 449 MNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGV--TPDVITYNSVLNGL 506

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +A K E   + +  +V KGC  N   + I   SL   G V EA     ++++  + P  
Sbjct: 507 SKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDT 566

Query: 561 DTFAKLMRGL 570
            +FA ++ G 
Sbjct: 567 VSFATIISGF 576



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 212/458 (46%), Gaps = 7/458 (1%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           ++  + HS   Y+ +I+ L     F A+  ++ E R +    +   V++  M+ +     
Sbjct: 32  REDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIGAMKSYGRKGK 91

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V++A++V + M  Y CEP    +  +++ L ++   K+A K+F  M+     P +  FT 
Sbjct: 92  VQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTI 151

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            +  +C+  +   A  +L  M   G + + V Y  +++G+ +     +A+EL  +M R G
Sbjct: 152 RIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIG 211

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+ +++  L+  LC+  +++E+ R   ++ + G  +++ T+   I G C+   +    
Sbjct: 212 IFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAM 271

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +LDS+I+ G+ P+ +TY  ++    K   + E  + + ++   G  PD   YN +I   
Sbjct: 272 SMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGY 331

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK+G L+ A  +          P   ++  +++G      +  A   F   +G+GL   P
Sbjct: 332 CKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGL--KP 389

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                  L+  L +   +  A  + + +   GC  +++ + + I+ L   G V +A +  
Sbjct: 390 TVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLM 449

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            D +    +P   TF  L+ G    Y +Q+  E T ++
Sbjct: 450 NDAIAKGYVPDVFTFNTLIDG----YCKQLKMETTIQI 483



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 190/396 (47%), Gaps = 18/396 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI  L +  +     AL      +  KP +I   ++ +L++      ++ +A+++++
Sbjct: 359 YCSLINGLCQNDEIDRALALFNAALGKGLKPTVI---LYNMLIKGLCQEGLILQALQMMN 415

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEG 257
           EM + GC  D + +  +++ LCK   V +A  L  D + + + P +  F +L+ G+CK+ 
Sbjct: 416 EMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQL 475

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+     +L +M   G  PD++ YN++L+G ++  K  D  E  + M  KGC PN  +Y 
Sbjct: 476 KMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYN 535

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L ++LC+  K+ EA     E+   G   D V++ T+ISGF  +  +   Y++   M ++
Sbjct: 536 ILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQ 595

Query: 378 GILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
             + +     +IM+ A  +K +L    +L  EM   GC PD   Y V+I   C  G    
Sbjct: 596 YKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDS 655

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
                 EM      P   +F  +++    Q  + EA +    MV  G++  P+      +
Sbjct: 656 GYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIV--PE------V 707

Query: 497 LNSLLRAQK--VEMAKDVWSCIVTKGCELNVYAWTI 530
           +NS+  A K  V   K V   ++ + C +  YA+ +
Sbjct: 708 VNSISEADKKVVAAPKIVVEDLLKRSC-ITYYAYEL 742



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 178/382 (46%), Gaps = 5/382 (1%)

Query: 192 KAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--FTS 248
           KA+E+ +++ +  G +     + C++  L  + +      +  E R     SL    +  
Sbjct: 22  KALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIG 81

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            +  + ++GK+ EA  V  +M     EP ++ YN +++   + G    A ++   M+  G
Sbjct: 82  AMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVG 141

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  ++T+ I++ CR ++   A R    M   GC+ + V Y T+++GF +       Y
Sbjct: 142 IVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAY 201

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+ + M++ GI P+  T+  ++    KK E++E   L+ ++ K G   ++  +N+ I+  
Sbjct: 202 ELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+ G L  A+++ + +    L+P   ++  ++ G      ++EA +Y  ++V  GL   P
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGL--EP 319

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   L++   +   ++ A+ +    + KG   + + +   I+ L  N  +  A +  
Sbjct: 320 DGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALF 379

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
              +   + P    +  L++GL
Sbjct: 380 NAALGKGLKPTVILYNMLIKGL 401



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G+++EAV+V+  M+  +  P   S+  +++  +  G   +A + F  M   G++  P   
Sbjct: 90  GKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIV--PDVY 147

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T    + S  R ++   A  + + +V++GC+LN  A+   +   +   +  EA     DM
Sbjct: 148 TFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDM 207

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV-RKMAAERQITFKMY 600
           +   + P   TF KL+  L K    Q +  +  KV +K       TF ++
Sbjct: 208 LRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIF 257


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 218/480 (45%), Gaps = 55/480 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L+  + +M +   V +L ++M RK+ P  + +  F IL++ F S   +  A+    +
Sbjct: 80  FNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYS--FNILIKCFCSCSKLPFALSTFGK 137

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
           + K G +PD   F  LL  LC    V EA  LF +M    +P++  FT+L+ G C+EG++
Sbjct: 138 ITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM---CRPNVVTFTTLMNGLCREGRV 194

Query: 260 VEAKYVLVQMKDAGFE------------------------------------PDIVVYNN 283
           VEA  +L +M + G +                                    P++V+Y+ 
Sbjct: 195 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSA 254

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           ++ G  + G+ +DA  L  EM+ KG  P+  +Y  +I   C   +  EA R   EM    
Sbjct: 255 IIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK 314

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              +VVTY+ LI+ + K RK     E+ D M+ RGI+PN +TY  ++    K+  L+   
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAE 374

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +   M   GC PDV  +N +I   C    + +   + +EM    L   T ++  ++HGF
Sbjct: 375 HMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGF 434

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT----- 518
              G L  A +  ++M+  G+   P   T   LL+ L    K++ A +++  +       
Sbjct: 435 CLVGDLNAALDLSQQMISSGV--CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 492

Query: 519 ------KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                  G E +V  + I I  L + G   EA     +M    ++P   T++ ++ GL K
Sbjct: 493 DASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCK 552



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/504 (22%), Positives = 228/504 (45%), Gaps = 59/504 (11%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     +  L+  L    +      L  +M +  P ++T   F  LM        V
Sbjct: 144 QPDVV----TFSTLLHGLCVEDRVSEALDLFHQMCR--PNVVT---FTTLMNGLCREGRV 194

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTS 248
            +A+ +LD M + G +P++  +G ++D +CK      A  L  +M E    KP++  +++
Sbjct: 195 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSA 254

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G  K+G+  +A  +  +M++ G  PD+  YN ++ G+   G+ ++A  LL+EM  + 
Sbjct: 255 IIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK 314

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            +PN  +Y+ LI A  +  K  EA   + EM   G   + +TY ++I GFCK  ++D   
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAE 374

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   M  +G  P+  T+  ++  +   + +++  EL+ EM + G V D + YN +I   
Sbjct: 375 HMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGF 434

Query: 429 CKLGELKEAVNVWNEMEAA----------------------------------------- 447
           C +G+L  A+++  +M ++                                         
Sbjct: 435 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 494

Query: 448 -----SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
                 + P   ++ +++ G + +G  +EA E +KEM  RG++  P   T  +++N L +
Sbjct: 495 SRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIV--PNTITYSSMINGLCK 552

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             +++ A  ++  + +K    +V  +   +      G V +      +M    ++    T
Sbjct: 553 QSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAIT 612

Query: 563 FAKLMRGLKKLYNRQIAAEITEKV 586
           +  L+ G +K+ N   A +I +++
Sbjct: 613 YITLIHGFRKVGNINGALDIFQEM 636



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 19/383 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I       ++     L++EM  RK  P ++T   +  L+  +   R   +A E+ D
Sbjct: 287 YNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVT---YSALINAYVKERKFFEAEELYD 343

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  ++D  CK + +  A  +F  M  +   P +  F +L+ G+C   
Sbjct: 344 EMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAK 403

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +L +M + G   D   YN L+ G+  +G +  A +L ++M   G  P+  +  
Sbjct: 404 RIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 463

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDR 366
            L+  LC   K+++A   F  M++S           G E DV TY  LISG     K   
Sbjct: 464 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLE 523

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+   M  RGI+PN +TY  ++    K+  L+E  ++   M      PDV  +N ++ 
Sbjct: 524 AEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVS 583

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + + + ++ EM    +     +++ ++HGF   G +  A + F+EM+  G+  
Sbjct: 584 GYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVY- 642

Query: 487 APQYGTLKALLNSLLRAQKVEMA 509
            P   T++++L  L   ++++ A
Sbjct: 643 -PDTITIRSMLTVLWSKEELKRA 664



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 158/337 (46%), Gaps = 21/337 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     Y ALI +  K RKF     L +EM  R   P  IT   +  ++  F    
Sbjct: 316 NPNVV----TYSALINAYVKERKFFEAEELYDEMLPRGIIPNTIT---YNSMIDGFCKQN 368

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +  A  +   M   GC PD F F  L+D  C    + +  +L  EM E         + 
Sbjct: 369 RLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYN 428

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR- 306
           +L++G+C  G L  A  +  QM  +G  PDIV  N LL G    GK+ DA E+ K M++ 
Sbjct: 429 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS 488

Query: 307 ----------KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
                      G +P+  +Y +LI  L    K  EA   + EM   G   + +TY+++I+
Sbjct: 489 KMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMIN 548

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G CK  ++D   ++ DSM  +   P+ +T+  ++  + K   +++ +EL  EM + G V 
Sbjct: 549 GLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVA 608

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
           D   Y  +I    K+G +  A++++ EM ++ + P T
Sbjct: 609 DAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDT 645



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/378 (19%), Positives = 157/378 (41%), Gaps = 69/378 (18%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P ++ +N L+    +M +      L ++M RK    +  S+ +LI+  C   K+  A   
Sbjct: 75  PSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALST 134

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE-------------------------- 369
           F ++ + G + DVVT++TL+ G C   ++    +                          
Sbjct: 135 FGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVTFTTLMNGLCREGRV 194

Query: 370 -----ILDSMIQRGILPNQLTY----------------LHIMLAHEKKEELEECV----- 403
                +LD M++ G+ PNQ+TY                L+++   E+   ++  V     
Sbjct: 195 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSA 254

Query: 404 ---------------ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
                           L  EM++ G  PD+  YN +I   C  G   EA  +  EM    
Sbjct: 255 IIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK 314

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           ++P   ++  +++ ++ +    EA E + EM+ RG++  P   T  ++++   +  +++ 
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGII--PNTITYNSMIDGFCKQNRLDA 372

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A+ ++  + TKGC  +V+ +   I        + +      +M +  ++    T+  L+ 
Sbjct: 373 AEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIH 432

Query: 569 GLKKLYNRQIAAEITEKV 586
           G   + +   A ++++++
Sbjct: 433 GFCLVGDLNAALDLSQQM 450



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
            + + IL+    +     +A E+  EMP  G  P+   +  +++ LCK S + EA ++FD
Sbjct: 505 VQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFD 564

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
            M  + F P +  F +L+ G+CK G++ +   +  +M   G   D + Y  L+ G+ ++G
Sbjct: 565 SMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVG 624

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +  A ++ +EM   G  P+  +   ++  L   E+++ A     +++ S
Sbjct: 625 NINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQMS 674


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 198/419 (47%), Gaps = 11/419 (2%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + HS+  +  +I  L     F     L+  M++EK   IT ++F+ + R +        A
Sbjct: 46  FRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCN-ITEDIFLSICRAYGRVHKPLDA 104

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           + V  +M +Y CEP +  +  +   L   + +K A + +  MRE    PS+     L+  
Sbjct: 105 VRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKA 164

Query: 253 WCK-EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            CK  G +  A  +  +M + G  PD   Y  L++G  ++GK+ +A EL KEM  K C P
Sbjct: 165 LCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSP 224

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
              +YT LI  LC+ + ++ A R   EM   G + +V TY++L+ G CKS    R  E+L
Sbjct: 225 TVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELL 284

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D M+ R  LPN +TY  ++    K+ +L+E VE++  M+  G  PD   Y  +I   C +
Sbjct: 285 DMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDI 344

Query: 432 GELKEAVNVWNEMEAASLSPG--TDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGLL 485
            +  EA N  +EM    +SP   T S  V +H  + QG   E    A + +  M  RG+ 
Sbjct: 345 CKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGI- 403

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +    T  +L+N       +  A  +   +V  GC  +   W   + + +    V+E+
Sbjct: 404 -SIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRES 461



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 152/298 (51%), Gaps = 27/298 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L ++ K G    L +EM  +   P ++T   +  L+     ++ +  AI +L+
Sbjct: 194 YGTLINGLCRLGKIGEAKELFKEMETKACSPTVVT---YTSLIHGLCQSKDLDSAIRLLE 250

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +P+ F +  L+D  CK+     A +L D M   R  P++  +++L++G CKEG
Sbjct: 251 EMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEG 310

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL EA  +L +MK  G  PD  +Y  ++SG+  + K  +A   L EM   G  PN  +++
Sbjct: 311 KLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWS 370

Query: 318 -------VLIQALCRMEKMEEANRAF---VEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
                  +++Q LC     E  NRAF   + M   G   D  T+ +L++ FC    + + 
Sbjct: 371 LHVRIHNIVVQGLC----TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKA 426

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC-----VELMGEMRKIGCVPDVSN 420
             ++D M+  G +P+++T+  ++ A   + ++ E      VELM E RK+G  PD +N
Sbjct: 427 AHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQVELMVEHRKMG--PDNTN 482



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 155/389 (39%), Gaps = 48/389 (12%)

Query: 225 VKEAAKLFDEMRERFKPSLRH----FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           +++A  +FD     +    RH    F+ ++           A+ +L +MK+        +
Sbjct: 28  IQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDI 87

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY------------------------ 316
           + ++   Y ++ K  DA  + ++M+   C+P+  SY                        
Sbjct: 88  FLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMR 147

Query: 317 -----------TVLIQALCRME-KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
                       VLI+ALC+    M+ A R F EM   GC  D  TY TLI+G C+  KI
Sbjct: 148 EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKI 207

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
               E+   M  +   P  +TY  ++    + ++L+  + L+ EM   G  P+V  Y+ +
Sbjct: 208 GEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSL 267

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +   CK G    A+ + + M +    P   ++  +VHG   +G L EA E    M  +GL
Sbjct: 268 MDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGL 327

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT--IWIHSLFSNG--- 539
              P  G    +++      K   A +    +V  G   N   W+  + IH++   G   
Sbjct: 328 --RPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCT 385

Query: 540 -HVKEACSYCLDMMDADVMPQPDTFAKLM 567
            H   A    L M    +     TF  L+
Sbjct: 386 EHPNRAFQLYLSMRTRGISIDAKTFDSLV 414



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 48/321 (14%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GF      ++ ++S          A ELL  M+ + C+   + +  + +A  R+ K  +A
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            R F +M+   CE                                   P+Q +Y+ +   
Sbjct: 105 VRVFRKMKEYECE-----------------------------------PSQKSYITVFAI 129

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK-LGELKEAVNVWNEMEAASLSP 451
              + +L+  +     MR++G  P V++ NV+I+  CK  G +  A+ ++ EM      P
Sbjct: 130 LVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPP 189

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + ++  +++G    G + EA E FKEM  +    +P   T  +L++ L +++ ++ A  
Sbjct: 190 DSYTYGTLINGLCRLGKIGEAKELFKEMETKA--CSPTVVTYTSLIHGLCQSKDLDSAIR 247

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY-CLDMMDADV----MPQPDTFAKL 566
           +   + +KG + NV+ +     S   +GH K  CS   L+++D  V    +P   T++ L
Sbjct: 248 LLEEMASKGIKPNVFTY-----SSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTL 302

Query: 567 MRGLKKLYNRQIAAEITEKVR 587
           + GL K    Q A EI ++++
Sbjct: 303 VHGLCKEGKLQEAVEILDRMK 323


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 227/479 (47%), Gaps = 40/479 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN +    VY+ LI +LS+  +      L+EEM      +   + F  ++        + 
Sbjct: 251 PNSI----VYQTLIHALSQKNQVSEALKLLEEMFVMGC-MPDVQTFNDVIHGLCKVNKIH 305

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF------------------- 232
            A +++D M   G  PD   +G LL  LC+   + EA K+                    
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYV 365

Query: 233 --DEMRER------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
              +++E             F+P +  +  L++G CKEG L  A+ ++ +M   G EP++
Sbjct: 366 MSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNV 425

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           + Y  L++G  + G + +A  +L EM  +G   N+  Y  LI ALCR EK+  A     E
Sbjct: 426 ITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSE 485

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M   GC+ D+ TY +LI G CK  +ID  + +  +M+  G + N +TY  ++ A  ++  
Sbjct: 486 MCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGA 545

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            ++ + L+ +M   GC  D   YN +I+  CK+G +++ + ++ +M    L   T S  +
Sbjct: 546 FQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNI 605

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           M++G    G +  A E+ ++ + RG +  P   T  ++LN L +  +++ A +++  +  
Sbjct: 606 MINGLCKVGKVDNAFEFLRDAINRGFV--PDIVTYNSVLNGLCKVGRIKEALNLFDRLQV 663

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
           +G   + + +  +I      G V +ACS+    ++   +P   T+  L+  L K  N++
Sbjct: 664 EGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQE 722



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 214/444 (48%), Gaps = 12/444 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q  Y H++DVY   I  L  + KF  +  L+ +M KE+  +    +F+I+M+ +  A   
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQM-KEEGIVFRESIFMIIMKHYGKAGQP 163

Query: 191 KKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTS 248
            +AI +L +M   Y CEP    +  +L+ L   +  + A  +F D + +   P++  F  
Sbjct: 164 GQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGI 223

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   C   ++  A  +L  M   G  P+ +VY  L+   +Q  ++++A +LL+EM   G
Sbjct: 224 VMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMG 283

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  ++  +I  LC++ K+ +A +    M   G   D +TY  L+ G C+  K++   
Sbjct: 284 CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEAR 343

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE-MRKIGCVPDVSNYNVVIRL 427
           +IL  +      PN      ++  +    +L+E    + E M   G  PD+  YN+++  
Sbjct: 344 KILIKI----PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHG 399

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LS 486
            CK G L  A ++ NEM      P   ++ ++V+G    G L EA     EM  RGL ++
Sbjct: 400 LCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTIN 459

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +  Y     L+ +L R +KV +A ++ S + TKGC+ +++ +   I+ L     + EA  
Sbjct: 460 SVIY---NCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFR 516

Query: 547 YCLDMMDADVMPQPDTFAKLMRGL 570
              +M+    +    T+  L+  L
Sbjct: 517 LFHNMLLDGAVANNVTYNTLIHAL 540



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 147/318 (46%), Gaps = 8/318 (2%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANS 315
           GK      +L+QMK+ G      ++  ++  Y + G+   A  LL +MR    C+P   S
Sbjct: 126 GKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKS 185

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y ++++ L      + A   F +M   G    V T+  ++   C   ++D    +L  M 
Sbjct: 186 YDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMT 245

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G +PN + Y  ++ A  +K ++ E ++L+ EM  +GC+PDV  +N VI   CK+ ++ 
Sbjct: 246 KHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH 305

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  + + M      P   ++  ++HG    G L EA +   +      +  P    L  
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIK------IPCPNNAILNT 359

Query: 496 LLNSLLRAQKVEMAKDVWS-CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           L+N  + + +++ A+   +  ++  G + +++ + I +H L   G +  A     +M   
Sbjct: 360 LINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 555 DVMPQPDTFAKLMRGLKK 572
              P   T+A L+ GL K
Sbjct: 420 GCEPNVITYAILVNGLCK 437



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 41/292 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN +     Y  L+  L K         ++ EM   +   I + ++  L+        V
Sbjct: 422 EPNVI----TYAILVNGLCKAGLLEEAGLVLHEM-SARGLTINSVIYNCLICALCRKEKV 476

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--------------- 235
             A+ +L EM   GC+PD F +  L+  LCK   + EA +LF  M               
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 236 ------RERFKPSLRHFTSLLY---------------GWCKEGKLVEAKYVLVQMKDAGF 274
                 R  F+ +L     +L+                +CK G + +   +  QM   G 
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
             D +  N +++G  ++GK+ +AFE L++   +G  P+  +Y  ++  LC++ +++EA  
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            F  ++  G   D  TY T IS  CK   ++         I+ G +P+ LT+
Sbjct: 657 LFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTW 708



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 3/184 (1%)

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL-SPGTDSFVVMVHG 462
           +L+ +M++ G V   S + ++++   K G+  +A+ +  +M A  L  P   S+ +++  
Sbjct: 133 KLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEI 192

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
            +   C   A   F +M+ +G+  +P   T   ++ +L    +V+ A  +   +   GC 
Sbjct: 193 LVTGNCPQVATNVFYDMLSKGV--SPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCV 250

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N   +   IH+L     V EA     +M     MP   TF  ++ GL K+     A ++
Sbjct: 251 PNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKL 310

Query: 583 TEKV 586
            +++
Sbjct: 311 VDRM 314


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 210/455 (46%), Gaps = 24/455 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWAL---MEEMRKEKPQLITTEVFVILMRRFASA 187
           QPN +     Y  ++  + KM    +   L   MEE+ + KP ++   ++  ++      
Sbjct: 209 QPNQI----TYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVV---IYSAIIDGLWKD 261

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
                A  +  EM + G  P+ F + C+++  C +    EA +L  EM ER   P +  F
Sbjct: 262 GRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTF 321

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           + L+    KEGK  EA+ +  +M   G  P+ + YN+++ G+++  ++  A  +   M  
Sbjct: 322 SVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMAT 381

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KGC P+  ++++LI   C  +++++  +   EM R G  A+ +TYTTLI GFC+   ++ 
Sbjct: 382 KGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNA 441

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI-----------GCV 415
             ++L  MI  G+ PN +T   ++       +L++ +E+   M+K               
Sbjct: 442 ALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVE 501

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  YN++I      G+  EA  ++ EM    L P T ++  ++ G   Q  L EA + 
Sbjct: 502 PDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQM 561

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F  M  +G   +P   T   L+N   +  +V    +V+  +  +G   N   +   IH  
Sbjct: 562 FDSMGSKGF--SPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGF 619

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              G++  A     +M+ + V P   T   ++ GL
Sbjct: 620 CQVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 654



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 210/464 (45%), Gaps = 31/464 (6%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKM----RKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           M   + P  ++S+ +      S SK+      FG +  L        P L+T   F  L+
Sbjct: 102 MEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKL-----GFHPSLVT---FSTLL 153

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FK 240
                   V +A+    ++    C+P+   F  L++ LC+   V EA  L D M E   +
Sbjct: 154 HGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 209

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFE 299
           P+   + +++ G CK G  V A  +L +M++    +P++V+Y+ ++ G  + G+ TDA  
Sbjct: 210 PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQN 269

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L  EM+ KG  PN  +Y  +I   C   +  EA R   EM       DVVT++ LI+   
Sbjct: 270 LFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALV 329

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  K     E+ + M+ RGI+PN +TY  ++    K+  L+    +   M   GC PDV 
Sbjct: 330 KEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVI 389

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            ++++I   C    + + + + +EM    L   T ++  ++HGF   G L  A +  +EM
Sbjct: 390 TFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEM 449

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL-----------NVYAW 528
           +  G+   P   T   LL+ L    K++ A +++  +     +L           +V  +
Sbjct: 450 ISSGV--CPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTY 507

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            I I  L + G   EA     +M    ++P   T+  ++ GL K
Sbjct: 508 NILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCK 551



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 222/467 (47%), Gaps = 53/467 (11%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP +I    F  LM        V +A+ +LD M + G +P++  +G ++D +CK      
Sbjct: 174 KPNVIA---FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 230

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E  R KP++  +++++ G  K+G+  +A+ +  +M++ G  P++  YN ++
Sbjct: 231 ALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMI 290

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           +G+   G+ ++A  LL+EM  +   P+  +++VLI AL +  K  EA   + EM   G  
Sbjct: 291 NGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGII 350

Query: 346 ADVVTYTTLISGF-----------------------------------CKSRKIDRCYEI 370
            + +TY ++I GF                                   C ++++D   ++
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M +RG++ N +TY  ++    +   L   ++L+ EM   G  P+V   N ++   C 
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470

Query: 431 LGELKEAVNVWNEMEAASLS-----------PGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            G+LK+A+ ++  M+ + +            P   ++ +++ G + +G   EA E ++EM
Sbjct: 471 NGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEM 530

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
             RGL+  P   T  ++++ L +  +++ A  ++  + +KG   +V  +T  I+     G
Sbjct: 531 PHRGLV--PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVG 588

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            V +      +M    ++    T+  L+ G  ++ N   A +I +++
Sbjct: 589 RVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEM 635



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 176/383 (45%), Gaps = 19/383 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I       ++     L+ EM  RK  P ++T   F +L+          +A E+ +
Sbjct: 286 YNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVT---FSVLINALVKEGKFFEAEELYN 342

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  ++D   K + +  A ++F  M  +   P +  F+ L+ G+C   
Sbjct: 343 EMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAK 402

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +L +M   G   + + Y  L+ G+ Q+G +  A +LL+EM   G  PN  +  
Sbjct: 403 RVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCN 462

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDR 366
            L+  LC   K+++A   F  M++S             E DV TY  LI G     K   
Sbjct: 463 TLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSE 522

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+ + M  RG++P+ +TY  ++    K+  L+E  ++   M   G  PDV  +  +I 
Sbjct: 523 AEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLIN 582

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK+G + + + V+ EM    +     ++  ++HGF   G +  A + F+EM+  G+  
Sbjct: 583 GYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVY- 641

Query: 487 APQYGTLKALLNSLLRAQKVEMA 509
            P   T++ +L  L   ++++ A
Sbjct: 642 -PDTITIRNMLTGLWSKEELKRA 663



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 143/297 (48%), Gaps = 19/297 (6%)

Query: 124 YYMWASK--QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           +Y+ A+K   P+ +     +  LI      ++      L+ EM + +  +  T  +  L+
Sbjct: 376 FYLMATKGCSPDVI----TFSILIDGYCGAKRVDDGMKLLHEMSR-RGLVANTITYTTLI 430

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--- 238
             F     +  A+++L EM   G  P+      LLD LC N  +K+A ++F  M++    
Sbjct: 431 HGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMD 490

Query: 239 ---------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
                     +P ++ +  L+ G   EGK  EA+ +  +M   G  PD + YN+++ G  
Sbjct: 491 LDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLC 550

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           +  ++ +A ++   M  KG  P+  ++T LI   C++ ++ +    F EM R G  A+ +
Sbjct: 551 KQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAI 610

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           TY TLI GFC+   I+   +I   MI  G+ P+ +T  +++     KEEL+  V+ +
Sbjct: 611 TYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 155/322 (48%), Gaps = 23/322 (7%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I   SK  +  A   +   M  +   P +IT   F IL+  +  A+ 
Sbjct: 351 PNTI----TYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVIT---FSILIDGYCGAKR 403

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           V   +++L EM + G   +   +  L+   C+  ++  A  L  EM      P++    +
Sbjct: 404 VDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNT 463

Query: 249 LLYGWCKEGKLVEAKYVLVQMK------DAG-----FEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+      DA       EPD+  YN L+ G    GK ++A
Sbjct: 464 LLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEA 523

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y  +I  LC+  +++EA + F  M   G   DVVT+TTLI+G
Sbjct: 524 EELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLING 583

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK  ++    E+   M +RGI+ N +TY  ++    +   +   +++  EM   G  PD
Sbjct: 584 YCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPD 643

Query: 418 -VSNYNVVIRLACKLGELKEAV 438
            ++  N++  L  K  ELK AV
Sbjct: 644 TITIRNMLTGLWSK-EELKRAV 664



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 147/351 (41%), Gaps = 71/351 (20%)

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EMRR  C  N  S+T+LI+  C   K+  A   F ++ + G    +VT++TL+ G C   
Sbjct: 103 EMRRIPC--NIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVED 160

Query: 363 KIDR-----------------------CYE--------ILDSMIQRGILPNQLTY----- 386
           ++                         C E        +LD M++ G+ PNQ+TY     
Sbjct: 161 RVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 220

Query: 387 -----------LHIMLAHEKKEELEECV--------------------ELMGEMRKIGCV 415
                      L+++   E+   ++  V                     L  EM++ G  
Sbjct: 221 GMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGIS 280

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P++  YN +I   C  G   EA  +  EM    +SP   +F V+++  + +G   EA E 
Sbjct: 281 PNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEEL 340

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           + EM+ RG++  P   T  ++++   +  +++ A+ ++  + TKGC  +V  ++I I   
Sbjct: 341 YNEMLPRGII--PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGY 398

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
                V +      +M    ++    T+  L+ G  +L N   A ++ +++
Sbjct: 399 CGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEM 449



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 126/291 (43%), Gaps = 9/291 (3%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG+ ++  + DA +L   M R    P    +  L+  + RME+ +       +ME   
Sbjct: 47  LQSGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRR 106

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++ ++T LI  FC   K+         + + G  P+ +T+  ++     ++ + E +
Sbjct: 107 IPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEAL 166

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
               ++    C P+V  +  ++   C+ G + EAV + + M    L P   ++  +V G 
Sbjct: 167 HFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 222

Query: 464 LGQGCLIEACEYFKEM--VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
              G  + A    ++M  V R     P      A+++ L +  +   A++++S +  KG 
Sbjct: 223 CKMGDTVSALNLLRKMEEVSR---IKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGI 279

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             N++ +   I+   S+G   EA     +M +  + P   TF+ L+  L K
Sbjct: 280 SPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK 330


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 210/445 (47%), Gaps = 21/445 (4%)

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
             L+  L K  +F  +W + EEM      P +IT   F  L+        + +A E+ DE
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVIT---FGTLIDGCCRQGDLLRAQEMFDE 207

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
           M   G  P   V+  L+  LC ++ ++EA  +   MRE    P++  + +L+ G+CK   
Sbjct: 208 MRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLAN 267

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +A  +   M   G  PD+V +  L+ G  + G+M  A  L   M +    PN   Y  
Sbjct: 268 AKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNS 327

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI A C++  + EA   F+E+ER     DV TY+ LI G C   + +    I + M + G
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG 387

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           IL N +TY  ++    K+ ++++ +E+  +M + G  P+V  ++ +I   CK+  L+ A+
Sbjct: 388 ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAM 447

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +++EM   SLSP   ++  M+ G    G + EA + + +M+  G+   P   T+  LL+
Sbjct: 448 GIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGI--TPNCYTISCLLD 505

Query: 499 SLLRAQKVEMAKDVWS---------CIVTKGCE----LNVYAWTIWIHSLFSNGHVKEAC 545
            L +  K+  A ++++         C V  G       N  A+T  IH L  +G   +A 
Sbjct: 506 GLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAV 565

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGL 570
               DM    + P    +  ++RGL
Sbjct: 566 KLFSDMRRYGLQPDEVIYVVMLRGL 590



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 212/454 (46%), Gaps = 8/454 (1%)

Query: 136 HSYDVYRALIKSLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           H+  +   L+++L K  K + A      E+ + K    T  V+  L+       +V++A+
Sbjct: 76  HARYLLNDLVQNLVKSHKPYHACQLAFSELSRLKSSKFTPNVYGELIIVLCKMELVEEAL 135

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
            +     K G          LL  L K    +   ++++EM      PS+  F +L+ G 
Sbjct: 136 SMYH---KVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGC 192

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C++G L+ A+ +  +M+  G  P ++VY  L+ G     K+ +A  + + MR  G  PN 
Sbjct: 193 CRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNV 252

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  L+   C++   ++A R + +M   G   DVVT+  LI G CK  ++     +  +
Sbjct: 253 YTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVN 312

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           MI+  + PN   Y  ++ A+ K  ++ E + L  E+ +    PDV  Y+++IR  C +  
Sbjct: 313 MIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSR 372

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            +EA N++ +M    +   + ++  ++ G   +G + +A E   +M   G+   P   T 
Sbjct: 373 TEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGV--EPNVITF 430

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++   + + ++ A  ++S +V K    +V  +T  I      G +KEA     DM+D
Sbjct: 431 STLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLD 490

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKV 586
             + P   T + L+ GL K      A E+ TEK+
Sbjct: 491 NGITPNCYTISCLLDGLCKDGKISDALELFTEKI 524



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 153/322 (47%), Gaps = 21/322 (6%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVL 197
           VY +LI +  K+       AL  E+ + +   ++ +VF   IL+R   S    ++A  + 
Sbjct: 324 VYNSLIDAYCKVGDVSEAMALFLELERFE---VSPDVFTYSILIRGLCSVSRTEEAGNIF 380

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           ++M K G   +   +  L+D  CK   + +A ++  +M E   +P++  F++L+ G+CK 
Sbjct: 381 EKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKI 440

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             L  A  +  +M      PD+V Y  ++ G+ + G M +A +L  +M   G  PN  + 
Sbjct: 441 RNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTI 500

Query: 317 TVLIQALCRMEKMEEANRAF---VEMERSGCEADV----------VTYTTLISGFCKSRK 363
           + L+  LC+  K+ +A   F   +E +   C  D           V YT LI G C+  +
Sbjct: 501 SCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQ 560

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
             +  ++   M + G+ P+++ Y+ ++    + + +   + L  +M K G +P+ + + +
Sbjct: 561 FSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI--LMMLHADMLKFGVIPNSAVHVI 618

Query: 424 VIRLACKLGELKEAVNVWNEME 445
           +     + G LK A N   ++E
Sbjct: 619 LCECYQESGFLKSAQNCSKDLE 640



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           AF  L  ++     PN   Y  LI  LC+ME +EEA   +    + G    +     L+ 
Sbjct: 101 AFSELSRLKSSKFTPNV--YGELIIVLCKMELVEEALSMY---HKVGAALTIQACNVLLY 155

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
              K+ + +  + I + MI  G+ P+ +T+  ++    ++ +L    E+  EMR  G VP
Sbjct: 156 VLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVP 215

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            V  Y ++IR  C   +++EA ++   M    + P   ++  ++ G+       +A   +
Sbjct: 216 TVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLY 275

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           ++M+G GL+  P   T   L++ L +  +++ A++++  ++      N+  +   I +  
Sbjct: 276 QDMLGEGLV--PDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYC 333

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             G V EA +  L++   +V P   T++ L+RGL  +   + A  I EK+ K
Sbjct: 334 KVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTK 385



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN    L I+L   K E +EE + +     K+G    +   NV++ +  K G  +    +
Sbjct: 115 PNVYGELIIVLC--KMELVEEALSMY---HKVGAALTIQACNVLLYVLVKTGRFELLWRI 169

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           + EM +  LSP   +F  ++ G   QG L+ A E F EM  +G++  P       L+  L
Sbjct: 170 YEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIV--PTVIVYTILIRGL 227

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
               K+E A+ +   +   G   NVY +   +       + K+A     DM+   ++P  
Sbjct: 228 CSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDV 287

Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            TF  L+ GL K    + A  +   + K +    I
Sbjct: 288 VTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNI 322


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 226/475 (47%), Gaps = 46/475 (9%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y  LI    K+ +    + + E M+ E  +P +IT   F  L+     A+M
Sbjct: 250 PNRI----TYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIIT---FNSLLNGLCRAQM 302

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS- 248
           +++A  VL+EM  YG  PD F +  L D   K  +V  +  L +E   +    L +  S 
Sbjct: 303 MEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSI 362

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL   CKEG + +A+ VL +  + G  P  V +N +++GY Q+G +  A+  +++M   G
Sbjct: 363 LLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVG 422

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  +Y  L++  C M+ MEEA +   +M   G   +V TY TLI G+ +S   DRC+
Sbjct: 423 LRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCF 482

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +IL+ M ++G+ PN ++Y  ++    K   + E   ++G+M   G VP+   YN++I  +
Sbjct: 483 QILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGS 542

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C  G+LK+A   ++EM A  + P   ++ ++++G   +G ++EA     E+  +GL  + 
Sbjct: 543 CIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGL--SF 600

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE--LNVY-------------------- 526
              T  +L++    A  V+ A +++  +   G +  LN Y                    
Sbjct: 601 DVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQ 660

Query: 527 ------------AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
                        +   IH    +G V++ACS    M    + P   T+  L+ G
Sbjct: 661 EMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILG 715



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 191/392 (48%), Gaps = 3/392 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
           + +    S +  +  +++  E+ + G  PD+F++G  + A  K   +K A +L   M R 
Sbjct: 152 LFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRG 211

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P +  +  ++ G CKE ++ +A+ +  +M D    P+ + YN L+ GY ++G++ +A
Sbjct: 212 GVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEA 271

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           F + + M+ +  +P   ++  L+  LCR + MEEA R   EME  G   D  TYTTL  G
Sbjct: 272 FNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDG 331

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
             K   +D    + +  +++G+     T   ++ A  K+  +E+  E++ +  + G  P 
Sbjct: 332 HLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPV 391

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              +N ++   C++G++ +A     +MEA  L P   ++  +V  F     + EA +  K
Sbjct: 392 GVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIK 451

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           +MV +G+L  P   T   L++   R+   +    +   +  KG + NV ++   I+ L  
Sbjct: 452 KMVEKGVL--PNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCK 509

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           + ++ EA     DM+   V+P    +  L+ G
Sbjct: 510 DANILEAEVILGDMVHRGVVPNAQIYNMLIDG 541



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 197/436 (45%), Gaps = 58/436 (13%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ- 131
           ++EK   +LKKF      LE  L   GV         ++N     G++   Y      + 
Sbjct: 372 NMEKAEEVLKKF------LENGLAPVGVFFN-----TIVNGYCQVGDINKAYTTIEKMEA 420

Query: 132 ----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
               PN+V     Y +L+K   +M+        +++M  EK  L   E +  L+  +  +
Sbjct: 421 VGLRPNHV----TYNSLVKKFCEMKNMEEAEKCIKKMV-EKGVLPNVETYNTLIDGYGRS 475

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV---------------------- 225
            +  +  ++L+EM K G +P+   +GCL++ LCK++++                      
Sbjct: 476 CLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIY 535

Query: 226 -------------KEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
                        K+A + FDEM  R   P+L  +  L+ G CK+GK++EA+ +  ++  
Sbjct: 536 NMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITR 595

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G   D++ YN+L+SGY+  G +  A EL + M++ G  P  N+Y  LI A C  E +  
Sbjct: 596 KGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLI-AGCGKEGLVL 654

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
             + + EM +     D V Y  LI  + +   + +   +  +M  +GI P+++TY  ++L
Sbjct: 655 VEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLIL 714

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            H K+  + +   L+ +M+  G +P    Y+++I   CKL +   A   + EM     +P
Sbjct: 715 GHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTP 774

Query: 452 GTDSFVVMVHGFLGQG 467
                  ++ G   +G
Sbjct: 775 SVSICDNLITGLREEG 790



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 3/276 (1%)

Query: 311 PNANSYTVLIQALCRMEKM-EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
           P    ++ ++ ++C   KM  E+   ++ M++ G    V +    +     +++ +   +
Sbjct: 109 PMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQ 168

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   +++ G+ P+Q  Y   + A  K  +L+  +ELM  M++ G  P V  YNVVI   C
Sbjct: 169 LFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLC 228

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K   +K+A  +++EM    ++P   ++  ++ G+   G L EA    + M    +   P 
Sbjct: 229 KEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENV--EPT 286

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T  +LLN L RAQ +E A+ V   +   G   + + +T         G+V  + +   
Sbjct: 287 IITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSE 346

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
           + +   V     T + L+  L K  N + A E+ +K
Sbjct: 347 EAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKK 382



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V+KA  +   M   G +PD+  + CL+    K   + +   L ++M+ R   P    +  
Sbjct: 687 VQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDI 746

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G CK      A     +M + GF P + + +NL++G  + G+  DA  +  EM  KG
Sbjct: 747 LIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDADVICSEMNMKG 806

Query: 309 CD 310
            D
Sbjct: 807 KD 808


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 213/446 (47%), Gaps = 46/446 (10%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA 185
           ++    P+ +    + R   +S  K RK   +  ++E      P +IT   + +L+  + 
Sbjct: 134 IYQGDIPDVIACTSLIRGFCRS-GKTRKATRIMEILEN-SGAVPDVIT---YNVLIGGYC 188

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLR 244
            +  + KA++VL+ M      PD   +  +L +LC +  +KEA ++ D +M+    P + 
Sbjct: 189 KSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVI 245

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +T L+   C +  + +A  +L +M+  G +PD+V YN L++G  + G++ +A + L  M
Sbjct: 246 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 305

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              GC PN  ++ ++++++C   +  +A R   +M R GC   VVT+  LI+  C+ R +
Sbjct: 306 PLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLL 365

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
            R  ++L+ M + G +PN L+Y  ++    ++++++  +E +  M   GC PD+  YN +
Sbjct: 366 GRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 425

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-------------------- 464
           +   CK G+   AV + N++ +   SP   ++  ++ G                      
Sbjct: 426 LTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGL 485

Query: 465 ------------GQGC---LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
                       G GC   + EA + F +M   GL   P   T  A++  L +AQ+   A
Sbjct: 486 KPDIITYSTLLRGLGCEGKVDEAIKIFHDM--EGLSIKPSAVTYNAIMLGLCKAQQTSRA 543

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSL 535
            D  + +V KGC+     +TI I  +
Sbjct: 544 IDFLAYMVEKGCKPTKATYTILIEGI 569



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 194/393 (49%), Gaps = 6/393 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I +R+      +++ ++ L+ M   G  PD      L+   C++   ++A ++ + +   
Sbjct: 112 IHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENS 171

Query: 239 FK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P +  +  L+ G+CK G++ +A  VL +M  A   PD+V YN +L      GK+ +A
Sbjct: 172 GAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVA---PDVVTYNTILRSLCDSGKLKEA 228

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E+L    ++ C P+  +YT+LI+A C    + +A +   EM + GC+ DVVTY  LI+G
Sbjct: 229 MEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLING 288

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK  ++D   + L++M   G  PN +T+  I+ +        +   L+ +M + GC P 
Sbjct: 289 ICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPS 348

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +N++I   C+   L  A++V  +M      P + S+  ++HGF  +  +  A EY +
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLE 408

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            MV RG    P   T   LL +L +  K + A ++ + + +KGC   +  +   I  L  
Sbjct: 409 IMVSRGCY--PDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTK 466

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            G  + A     +M    + P   T++ L+RGL
Sbjct: 467 VGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           + G+L E    L +M   G  PD++   +L+ G+ + GK   A  +++ +   G  P+  
Sbjct: 119 RNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVI 178

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y VLI   C   K  E ++A   +ER     DVVTY T++   C S K+    E+LD  
Sbjct: 179 TYNVLIGGYC---KSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 235

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           +QR   P+ +TY  ++ A      + + ++L+ EMRK GC PDV  YNV+I   CK G L
Sbjct: 236 MQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA+   N M      P   +  +++      G  ++A     +M+ +G   +P   T  
Sbjct: 296 DEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG--CSPSVVTFN 353

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+N L R + +  A DV   +   GC  N  ++   +H       +  A  Y   M+  
Sbjct: 354 ILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 413

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              P   T+  L+  L K      A EI  ++
Sbjct: 414 GCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 9/271 (3%)

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++ L R  ++EE  +    M   G   DV+  T+LI GFC+S K  +   I++ +   G 
Sbjct: 114 LRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGA 173

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+ +TY  ++  + K  E+++ +++   + ++   PDV  YN ++R  C  G+LKEA+ 
Sbjct: 174 VPDVITYNVLIGGYCKSGEIDKALQV---LERMSVAPDVVTYNTILRSLCDSGKLKEAME 230

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V +        P   ++ +++        + +A +   EM  +G    P   T   L+N 
Sbjct: 231 VLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG--CKPDVVTYNVLING 288

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           + +  +++ A    + +   GC+ NV    I + S+ S G   +A     DM+     P 
Sbjct: 289 ICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPS 348

Query: 560 PDTFAKLMRGL--KKLYNRQIAAEITEKVRK 588
             TF  L+  L  K+L  R I  ++ EK+ K
Sbjct: 349 VVTFNILINFLCRKRLLGRAI--DVLEKMPK 377


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 218/479 (45%), Gaps = 55/479 (11%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMP 201
           L+  + +M +   V +L ++M +++   I  ++  F IL++ F S   +  A+    ++ 
Sbjct: 85  LMGVVVRMERPDLVISLYQKMERKQ---IRCDIYSFTILIKCFCSCSKLPFALSTFGKIT 141

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLV 260
           K G  PD   F  LL  LC    V EA  LF +M E   +P++  FT+L+ G C+EG++V
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR-KGCDPNANSYTVL 319
           EA  +L +M + G +P  + Y  ++ G  ++G    A +LL++M       PN   Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAI 261

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS---------------RKI 364
           I +LC+  +  +A   F EM+  G   D+ TY ++I GFC S               RKI
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 365 D--------------------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                                   E+ D M+ RGI+PN +TY  ++    K+  L+    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   GC P++  +N +I   C    + + + + +EM    L   T ++  ++HGF 
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA-----------KDVW 513
             G L  A +  +EM+  GL   P   T   LL+ L    K++ A           KD+ 
Sbjct: 442 LVGDLNAALDLLQEMISSGL--CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +     G E +V  + I I  L + G   EA     +M    ++P   T++ ++ GL K
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/559 (22%), Positives = 244/559 (43%), Gaps = 83/559 (14%)

Query: 78  FRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHS 137
           F IL K      KL  AL   G + + GL                         P+ V  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGL------------------------HPDVV-- 150

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIE 195
              +  L+  L    +      L  +M +   +P ++T   F  LM        + +A+ 
Sbjct: 151 --TFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVT---FTTLMNGLCREGRIVEAVA 205

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGW 253
           +LD M + G +P +  +G ++D +CK      A  L  +M E     P++  +++++   
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSL 265

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+G+  +A+ +  +M++ G  PD+  YN+++ G+   G+ +DA +LL+EM  +   P+ 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  LI A  +  K  EA   + EM   G   + +TY+++I GFCK  ++D    +   
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M  +G  PN +T+  ++  +   + +++ +EL+ EM + G V D + YN +I     +G+
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 434 LKEAVNVWNEMEAASL-------------------------------------------- 449
           L  A+++  EM ++ L                                            
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN 505

Query: 450 --SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   ++ +++ G + +G  +EA E ++EM  RG++  P   T  ++++ L +  +++
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV--PDTITYSSMIDGLCKQSRLD 563

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A  ++  + +K    NV  +T  I+     G V +      +M    ++    T+  L+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 568 RGLKKLYNRQIAAEITEKV 586
            G +K+ N   A +I +++
Sbjct: 624 CGFRKVGNINGALDIFQEM 642



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 19/383 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I       ++     L++EM  RK  P ++T   +  L+  F       +A E+ D
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT---YNALINAFVKEGKFFEAEELYD 349

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  ++D  CK + +  A  +F  M  +   P+L  F +L+ G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +L +M + G   D   YN L+ G+  +G +  A +LL+EM   G  P+  +  
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDR 366
            L+  LC   K+++A   F  M++S           G E DV TY  LISG     K   
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P+V  +  +I 
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + + + ++ EM    +     +++ ++ GF   G +  A + F+EM+  G+  
Sbjct: 590 GYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY- 648

Query: 487 APQYGTLKALLNSLLRAQKVEMA 509
            P   T++ +L  L   ++++ A
Sbjct: 649 -PDTITIRNMLTGLWSKEELKRA 670



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 185/409 (45%), Gaps = 4/409 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L   F   + ++ AI++  +M +    P    F  L+  + +         L+ +M R++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +  +  FT L+  +C   KL  A     ++   G  PD+V +N LL G     ++++A 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +M    C PN  ++T L+  LCR  ++ EA      M   G +   +TY T++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 359 CKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           CK        ++L  M +   I+PN + Y  I+ +  K     +   L  EM++ G  PD
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN +I   C  G   +A  +  EM    +SP   ++  +++ F+ +G   EA E + 
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ RG++  P   T  ++++   +  +++ A+ ++  + TKGC  N+  +   I     
Sbjct: 350 EMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              + +      +M +  ++    T+  L+ G   + +   A ++ +++
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P LIT   F  L+  +  A+ 
Sbjct: 358 PNTI----TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLIT---FNTLIDGYCGAKR 410

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EM + G   D   +  L+        +  A  L  EM      P +    +
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + F  M       +VVT+TTLI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 418 -VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++  N++  L  K  ELK AV +  +++ +
Sbjct: 651 TITIRNMLTGLWSK-EELKRAVAMLEKLQMS 680


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 199/420 (47%), Gaps = 49/420 (11%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLY 251
           V   MP+ G  PD F +  L+  LC     +EA +L   M         P++  + +++ 
Sbjct: 149 VFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVID 208

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+ KEG++ +A ++  +M   G  PD+V YN+L+ G  +   M  A  +L+ M  KG  P
Sbjct: 209 GFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMP 268

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE-- 369
           +  +Y ++I+  C + ++EEA R   +M  SG + DVVTY+ LI  +CK   I RC E  
Sbjct: 269 DTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCK---IGRCAEAR 325

Query: 370 -ILDSMIQRGILPNQLTYLHIML------------------------------------A 392
            + DSM+++G  PN   Y HI+L                                    A
Sbjct: 326 SVFDSMVRKGQKPNSTIY-HILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICA 384

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           + K   +++ +    EMR+ G  PDV +Y+ VI + CK G +++AV  +N+M +  LSP 
Sbjct: 385 YAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPN 444

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             SF  ++HG    G   +  E   EM+ RG+   P    +  ++++L +  +V  A+D 
Sbjct: 445 IISFTSLIHGLCSIGEWKKVEELAFEMINRGI--HPDAIFMNTIMDNLCKEGRVVEAQDF 502

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  ++  G + +V ++   I      G + E+      M+   + P   T+  L+ G  K
Sbjct: 503 FDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFK 562



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 214/434 (49%), Gaps = 4/434 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  L K +      A+++ M  +K  +  T  + I++R + S   +++A+ +L +M
Sbjct: 238 YNSLIDGLCKAQAMDKAVAILQHMF-DKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKM 296

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G +PD   +  L+   CK     EA  +FD M R+  KP+   +  LL+G+  +G L
Sbjct: 297 SGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGAL 356

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           ++ + +L  M   G   +   +N L+  YA+ G +  A     EMR+ G  P+  SY+ +
Sbjct: 357 IDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 416

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+  ++E+A   F +M   G   +++++T+LI G C   +  +  E+   MI RGI
Sbjct: 417 IHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGI 476

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +    IM    K+  + E  +    +  IG  PDV +YN +I   C +G++ E++ 
Sbjct: 477 HPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIK 536

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
             + M +  L P + ++  +++G+   G + +A   ++EM  + +       T   +L+ 
Sbjct: 537 QLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAI--TSNIMLHG 594

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L +A ++  A++++  +V +G +L +  +   +  L  N  V EA     D+   +    
Sbjct: 595 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 654

Query: 560 PDTFAKLMRGLKKL 573
             TF+ ++  L K+
Sbjct: 655 VRTFSIVINALLKV 668



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 4/312 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P +I+   F  L+    S    KK  E+  EM   G  PD      ++D LCK   V EA
Sbjct: 443 PNIIS---FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEA 499

Query: 229 AKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
              FD  +    KP +  + +L+ G+C  GK+ E+   L +M   G  PD   YN+LL+G
Sbjct: 500 QDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNG 559

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           Y + G++ DA  L +EM RK     A +  +++  L +  ++  A   +++M   G +  
Sbjct: 560 YFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLR 619

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           + TY T++ G C++  +D    + + +  +    +  T+  ++ A  K   ++E   L  
Sbjct: 620 IETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFS 679

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            M   G VPDV  Y+++I+   + G L+E+ N++  ME    +  +    ++V   L +G
Sbjct: 680 AMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKG 739

Query: 468 CLIEACEYFKEM 479
            +  A  Y  ++
Sbjct: 740 DVRRAGTYLTKI 751



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 198/456 (43%), Gaps = 54/456 (11%)

Query: 76  KIFRILKKFHSRLPKLELAL----QHSGVVLRPGLTERV--------INRCGDAGNLGYR 123
           + + I+ + +  L +LE A+    + SG  L+P +            I RC +A ++ + 
Sbjct: 271 RTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSV-FD 329

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
             +   ++PN      +Y  L+   +       V  L++ M ++         F IL+  
Sbjct: 330 SMVRKGQKPNST----IYHILLHGYATKGALIDVRDLLDLMIRDGIPF-EHRAFNILICA 384

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
           +A    V KA+    EM + G  PD   +  ++  LCK   V++A   F++M  E   P+
Sbjct: 385 YAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPN 444

Query: 243 LRHFTSLLYG------W-----------------------------CKEGKLVEAKYVLV 267
           +  FTSL++G      W                             CKEG++VEA+    
Sbjct: 445 IISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFD 504

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
            +   G +PD+V YN L+ GY  +GKM ++ + L  M   G  P++ +Y  L+    +  
Sbjct: 505 MVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNG 564

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           ++E+A   + EM R   +   +T   ++ G  ++ +I    E+   M+ RG      TY 
Sbjct: 565 RVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYN 624

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++    +   ++E + +  ++R      DV  +++VI    K+G + EA ++++ M   
Sbjct: 625 TVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLR 684

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
              P   ++ +M+   + +G L E+   F  M   G
Sbjct: 685 GPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNG 720



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 118/301 (39%), Gaps = 42/301 (13%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A  L   M R G +  A    +LI+  C + +++ A  AF    ++G     VT   LI 
Sbjct: 75  AVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIK 134

Query: 357 GFCKSRKID------------------------------------RCYEILDSMIQRG-- 378
           G C   + D                                       E+L  M   G  
Sbjct: 135 GLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGY 194

Query: 379 -ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
              PN ++Y  ++    K+ E+++   L  EM   G  PDV  YN +I   CK   + +A
Sbjct: 195 NCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKA 254

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           V +   M    + P T ++ +M+ G+   G L EA    K+M G GL   P   T   L+
Sbjct: 255 VAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGL--QPDVVTYSLLI 312

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               +  +   A+ V+  +V KG + N   + I +H   + G + +     LD+M  D +
Sbjct: 313 QYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRD-LLDLMIRDGI 371

Query: 558 P 558
           P
Sbjct: 372 P 372


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 218/440 (49%), Gaps = 10/440 (2%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKA 193
           VHSY++   +I    K+++      L +EM   + P +I    F  ++  FA  +    A
Sbjct: 273 VHSYNI---MINGFCKIKRVDKALNLFKEMILSRFPPIIQ---FNKILDSFAKMKHYSTA 326

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           + +   +   G +PD F    L++  C    +     +  ++ +R + PS     +L+ G
Sbjct: 327 VSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKG 386

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            C +G++ +A +   ++   GF+ + V Y  L++G  ++G    A +LL+++  +   PN
Sbjct: 387 LCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPN 446

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
              Y+ +I ALC+ + + EA   F EM   G  ADVVTY+TLI GFC   K+     +L+
Sbjct: 447 VEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLN 506

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ + I P+  TY  ++ A  K+ +++E   ++  M K    PDV  YN ++     + 
Sbjct: 507 EMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVY 566

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           E+K+A +V+N M    ++P   ++ ++++GF     + EA   FKEM  + ++  P   T
Sbjct: 567 EVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMV--PDTVT 624

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             +L++ L ++ ++    D+   +  +G   +V  +   I  L  NGH+ +A +    M 
Sbjct: 625 YSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMK 684

Query: 553 DADVMPQPDTFAKLMRGLKK 572
           D  + P   TF  L+ GL K
Sbjct: 685 DQGIRPNTFTFTILLDGLCK 704



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 226/482 (46%), Gaps = 41/482 (8%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFV----- 178
           M  S+ P  +     +  ++ S +KM+ +    +L    E++  +P L T  + +     
Sbjct: 299 MILSRFPPIIQ----FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCH 354

Query: 179 -------------ILMRRFASARM--------------VKKAIEVLDEMPKYGCEPDEFV 211
                        IL R +  + +              VKKA+   D++   G + ++  
Sbjct: 355 MGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 414

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           +  L++ +CK    + A KL  ++  R  KP++  +++++   CK   + EA  +  +M 
Sbjct: 415 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMT 474

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
             G   D+V Y+ L+ G+  +GK+ +A  LL EM  K  +P+  +YT+L+ AL +  K++
Sbjct: 475 VKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVK 534

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA      M ++  + DV TY TL++G+    ++ +   + ++M   G+ P+  TY  ++
Sbjct: 535 EAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 594

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               K + ++E + L  EM +   VPD   Y+ ++   CK G +    ++ +EM      
Sbjct: 595 NGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQP 654

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
               ++  ++ G    G L +A   F +M  +G+   P   T   LL+ L +  +++ A+
Sbjct: 655 ADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGI--RPNTFTFTILLDGLCKGGRLKDAQ 712

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +V+  ++TKG  L+VY + + I+     G ++EA +    M +   +P   TF  ++  L
Sbjct: 713 EVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINAL 772

Query: 571 KK 572
            K
Sbjct: 773 FK 774



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 186/383 (48%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  + K+        L+ ++  R  KP +   E++  ++      ++V +A  +  
Sbjct: 415 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNV---EMYSTIIDALCKYQLVSEAYGLFS 471

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G   D   +  L+   C    +KEA  L +EM  +   P +R +T L+    KEG
Sbjct: 472 EMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEG 531

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK VL  M  A  +PD+  YN L++GY  + ++  A  +   M   G  P+ ++YT
Sbjct: 532 KVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYT 591

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+ + ++EA   F EM +     D VTY++L+ G CKS +I   ++++D M  R
Sbjct: 592 ILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR 651

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   + +TY  ++    K   L++ + L  +M+  G  P+   + +++   CK G LK+A
Sbjct: 652 GQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDA 711

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+ ++           + VM++G   QG L EA     +M   G +  P   T   ++
Sbjct: 712 QEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCI--PNAVTFDIII 769

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
           N+L +  + + A+ +   ++ +G
Sbjct: 770 NALFKKDENDKAEKLLRQMIARG 792



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 204/434 (47%), Gaps = 7/434 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+ +L K  K     +++  M K   K  +IT   +  LM  +     VKKA  V +
Sbjct: 206 YNILVDALCKEGKVKEAKSVLAVMLKACVKSNVIT---YSTLMDGYFLVYEVKKAQHVFN 262

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            M   G  PD   +  +++  CK   V +A  LF EM     P +  F  +L  + K   
Sbjct: 263 AMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKH 322

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +  +++  G +PD+   N L++ +  MG++T  F +L ++ ++G  P+  +   
Sbjct: 323 YSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNT 382

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI+ LC   ++++A     ++   G + + V+Y TLI+G CK        ++L  +  R 
Sbjct: 383 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRL 442

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN   Y  I+ A  K + + E   L  EM   G   DV  Y+ +I   C +G+LKEA+
Sbjct: 443 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + NEM   +++P   ++ ++V     +G + EA      M+   +   P   T   L+N
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACV--KPDVFTYNTLMN 560

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
             L   +V+ A+ V++ +   G   +V+ +TI I+    +  V EA +   +M   +++P
Sbjct: 561 GYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVP 620

Query: 559 QPDTFAKLMRGLKK 572
              T++ L+ GL K
Sbjct: 621 DTVTYSSLVDGLCK 634



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 176/350 (50%), Gaps = 6/350 (1%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEV 196
           ++Y  +I +L K +     + L  EM  +    I+ +V  +  L+  F     +K+AI +
Sbjct: 448 EMYSTIIDALCKYQLVSEAYGLFSEMTVKG---ISADVVTYSTLIYGFCIVGKLKEAIGL 504

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           L+EM      PD   +  L+DAL K   VKEA  +   M +   KP +  + +L+ G+  
Sbjct: 505 LNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLL 564

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             ++ +A++V   M   G  PD+  Y  L++G+ +   + +A  L KEM +K   P+  +
Sbjct: 565 VYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVT 624

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y+ L+  LC+  ++        EM   G  ADV+TY +LI G CK+  +D+   + + M 
Sbjct: 625 YSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMK 684

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +GI PN  T+  ++    K   L++  E+  ++   G   DV  YNV+I   CK G L+
Sbjct: 685 DQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLE 744

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           EA+ + ++ME     P   +F ++++    +    +A +  ++M+ RGLL
Sbjct: 745 EALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGLL 794



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 162/336 (48%), Gaps = 3/336 (0%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           ++  + P      +L+ G C +G++ EA +   ++   GF+ + V Y  L++G  ++G  
Sbjct: 55  LKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDT 114

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A + L+++  +   PN   Y  +I ALC+ + + EA   F EM   G  A+VVTY+TL
Sbjct: 115 RAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTL 174

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I GFC   K+     +L+ M+ + I PN  TY  ++ A  K+ +++E   ++  M K   
Sbjct: 175 IYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACV 234

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             +V  Y+ ++     + E+K+A +V+N M    ++P   S+ +M++GF     + +A  
Sbjct: 235 KSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALN 294

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            FKEM+   L   P       +L+S  + +    A  +   +  KG + +++   I I+ 
Sbjct: 295 LFKEMI---LSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINC 351

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
               G +    S    ++     P   T   L++GL
Sbjct: 352 FCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGL 387



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/492 (21%), Positives = 209/492 (42%), Gaps = 42/492 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  + ++    A    + ++  R  KP +   E++  ++      ++V +A  +  
Sbjct: 101 YATLINGVCRIGDTRAAIKFLRKIDGRLAKPNV---EMYNTIIDALCKYQLVSEAYGLFS 157

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G   +   +  L+   C    +KEA  L + M  +   P++  +  L+   CKEG
Sbjct: 158 EMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEG 217

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK VL  M  A  + +++ Y+ L+ GY  + ++  A  +   M   G  P+ +SY 
Sbjct: 218 KVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYN 277

Query: 318 VLIQALCRMEKMEEANRAFVEM----------------------------------ERSG 343
           ++I   C+++++++A   F EM                                  E  G
Sbjct: 278 IMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKG 337

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + D+ T   LI+ FC   +I   + +L  +++RG  P+ +T   ++     K ++++ +
Sbjct: 338 IQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKAL 397

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
               ++   G   +  +Y  +I   CK+G+ + A+ +  +++     P  + +  ++   
Sbjct: 398 HFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDAL 457

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                + EA   F EM  +G+  +    T   L+       K++ A  + + +V K    
Sbjct: 458 CKYQLVSEAYGLFSEMTVKGI--SADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINP 515

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           +V  +TI + +L   G VKEA S    M+ A V P   T+  LM G   +Y  + A  + 
Sbjct: 516 DVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVF 575

Query: 584 EKVRKMAAERQI 595
             +  M     +
Sbjct: 576 NAMSLMGVTPDV 587



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 4/180 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR-KEKPQLITTEVFVILMRRFASARM 189
           Q N V     Y +L+  L K  +   VW L++EMR + +P  + T  +  L+        
Sbjct: 615 QKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVIT--YNSLIDGLCKNGH 672

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTS 248
           + KAI + ++M   G  P+ F F  LLD LCK   +K+A ++F D + + +   +  +  
Sbjct: 673 LDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNV 732

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++YG CK+G L EA  +L +M++ G  P+ V ++ +++   +  +   A +LL++M  +G
Sbjct: 733 MIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 133/290 (45%), Gaps = 3/290 (1%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           +  +L ++ ++G  P+  +   LI+ LC   +++EA     ++   G + + V+Y TLI+
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G C+        + L  +  R   PN   Y  I+ A  K + + E   L  EM   G   
Sbjct: 107 GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISA 166

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           +V  Y+ +I   C +G+LKEA+ + N M   +++P   ++ ++V     +G + EA    
Sbjct: 167 NVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVL 226

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             M+   + S     T   L++      +V+ A+ V++ +   G   +V+++ I I+   
Sbjct: 227 AVMLKACVKS--NVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFC 284

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               V +A +   +M+ +   P    F K++    K+ +   A  ++ ++
Sbjct: 285 KIKRVDKALNLFKEMILSR-FPPIIQFNKILDSFAKMKHYSTAVSLSHRL 333


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 234/505 (46%), Gaps = 42/505 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFV------------------IL 180
           +  ++ S +KM+ +    +L    E++  +P LIT  + +                  IL
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 181 MRRFASARM--------------VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
            R +    +              VKKA+   D++   G + ++  +G L++ +CK    +
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTR 181

Query: 227 EAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A KL  ++  R  KP++  +++++   CK   + EA  +  +M   G   D+V Y+ L+
Sbjct: 182 AAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   GK+ +A  LL EM  K  +PN  +Y +L+ ALC+  K++EA      M ++  +
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            DV+TY+TL+ G+    ++ +   + ++M   G+ P+  TY  ++    K + ++E + L
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             EM +   VP +  Y+ +I   CK G +    ++ +EM          ++  ++ G   
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCK 421

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G L  A   F +M  +G+   P   T   LL+ L +  +++ A++V+  ++TKG  LNV
Sbjct: 422 NGHLDRAIALFNKMKDQGI--RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNV 479

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
           Y + + I      G ++EA +    M D   +P   TF  ++  L K           +K
Sbjct: 480 YTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKK 539

Query: 586 VRKMAAERQ-----ITFKMYKRRGE 605
           V ++   ++     ITFK +   GE
Sbjct: 540 VWEIVEHKKGETPSITFKCHSHDGE 564



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 169/350 (48%), Gaps = 3/350 (0%)

Query: 224 SVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           +V +A   F+ M   R  P +  F  +L  + K      A  +  +++  G +PD++  N
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++ +  MG++T  F +L ++ ++G  P+  +   LI+ LC   ++++A     ++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G + + V+Y TLI+G CK        ++L  +  R   PN + Y  I+ A  K + + E 
Sbjct: 159 GFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEA 218

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             L  EM   G   DV  Y+ +I   C  G+LKEA+ + NEM   +++P   ++ ++V  
Sbjct: 219 YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +G + EA      M+   +   P   T   L++      +V+ A+ V++ +   G  
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACV--KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 336

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +V+ +TI I+    N  V EA +   +M   +++P   T++ L+ GL K
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 135/272 (49%), Gaps = 9/272 (3%)

Query: 181  MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-F 239
            M+ +++A  +   +E+       G +PD F    L++  C    +     +  ++ +R +
Sbjct: 939  MKHYSTAVSLSHRLEL------KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGY 992

Query: 240  KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
             P    FT+L+ G C +G++ +A +   ++   GF+ + V Y  L++G  ++G    A +
Sbjct: 993  HPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIK 1052

Query: 300  LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
            LL+++  +   P+   Y  +I ALC+ + + +A   F EM   G  ADVVTY TLI GFC
Sbjct: 1053 LLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFC 1112

Query: 360  KSRKIDRCYEILDSMIQRGILPNQLTY--LHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
               K+     +L+ M+ + I PN  TY  L   L  E K+ L+E + ++ +M   GC  +
Sbjct: 1113 IVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKAN 1172

Query: 418  VSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
               + ++I    +  E  +   + +EM A  L
Sbjct: 1173 AVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 165  RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
            R   P  IT   F  L+        V KA+   D++   G + ++  +G L++ +CK   
Sbjct: 990  RGYHPDTIT---FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGD 1046

Query: 225  VKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
             + A KL  ++  R  KP +  + +++   CK   + +A  +  +M   G   D+V YN 
Sbjct: 1047 TRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNT 1106

Query: 284  LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK--MEEANRAFVEMER 341
            L+ G+  +GK+ +A  LL +M  K  +PN  +Y +L+ ALC+  K  ++E+     +ME 
Sbjct: 1107 LIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMED 1166

Query: 342  SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
            +GC+A+ VT+  +IS   +  + D+  ++L  MI RG+L
Sbjct: 1167 NGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGLL 1205



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 101/195 (51%)

Query: 273  GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
            G +PD+   N L++ +  MG++T  F +L ++ ++G  P+  ++T LI  LC   ++ +A
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 333  NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                 ++   G + + V+Y TLI+G CK        ++L  +  R   P+ + Y  I+ A
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDA 1075

Query: 393  HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
              K + + +   L  EM   G   DV  YN +I   C +G+LKEA+ + N+M   +++P 
Sbjct: 1076 LCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPN 1135

Query: 453  TDSFVVMVHGFLGQG 467
              ++ ++V     +G
Sbjct: 1136 VRTYNILVDALCKEG 1150



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 115/248 (46%), Gaps = 4/248 (1%)

Query: 291  MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            M   + A  L   +  KG  P+  +  +LI   C M ++        ++ + G   D +T
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTIT 998

Query: 351  YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
            +TTLI+G C   ++++     D ++ +G   NQ++Y  ++    K  +    ++L+ ++ 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 411  KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
                 PDV  YN +I   CK   + +A  ++ EM    +S    ++  +++GF   G L 
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 471  EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK--VEMAKDVWSCIVTKGCELNVYAW 528
            EA     +MV + +   P   T   L+++L +  K  ++ +  + S +   GC+ N   +
Sbjct: 1119 EAIGLLNKMVLKTI--NPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTF 1176

Query: 529  TIWIHSLF 536
             I I +LF
Sbjct: 1177 EIIISALF 1184



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           Q N V     Y +LI  L K  +   VW L++EM  R +   +IT   +  L+       
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVIT---YSSLIDGLCKNG 423

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFT 247
            + +AI + ++M   G  P+ F F  LLD LCK   +K+A ++F D + + +  ++  + 
Sbjct: 424 HLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYN 483

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            ++ G CK+G L EA  +L +M+D G  PD V +
Sbjct: 484 VMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTF 517



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 37/234 (15%)

Query: 339  MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
            +E  G + D+ T   LI+ FC   +I   + IL  +++RG         H          
Sbjct: 952  LELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRG--------YH---------- 993

Query: 399  LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
                             PD   +  +I   C  G++ +A++  +++ A        S+  
Sbjct: 994  -----------------PDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGT 1036

Query: 459  MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
            +++G    G    A +  +++ GR  L+ P       ++++L + Q V  A  ++  +  
Sbjct: 1037 LINGVCKIGDTRAAIKLLRKIDGR--LTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNV 1094

Query: 519  KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            KG   +V  +   I+     G +KEA      M+   + P   T+  L+  L K
Sbjct: 1095 KGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCK 1148


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 215/457 (47%), Gaps = 9/457 (1%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEV 176
           +L +  Y    +    V+ Y +   +I +L K +K     + + +M ++   P ++T   
Sbjct: 340 DLAWEIYQEVVRSGVQVNVYTL-NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVT--- 395

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           +  L+  +    ++++A E++D M   G +P  F +  +++ LCK      A  + DEM 
Sbjct: 396 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 455

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +    P    +  LL   C+   +++A+ +  +M   G  PD+V ++ L+   ++ G + 
Sbjct: 456 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 515

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A +  ++M+  G  P+   YT+LI   CR   M EA +   EM   GC  DVVTY T++
Sbjct: 516 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTIL 575

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G CK + +    E+   M +RG+ P+  T+  ++  + K   + + V L   M +    
Sbjct: 576 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLK 635

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  YN +I   CK  E+++   +WN+M +  + P   S+ ++++G+   GC+ EA   
Sbjct: 636 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 695

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           + EMV +G        T   ++    RA     A +  S ++ KG   +   +   I+  
Sbjct: 696 WDEMVEKGF--EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGF 753

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
               ++  A +    M ++ ++P   T+  ++ G  +
Sbjct: 754 IKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSR 790



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 6/353 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI  LSK            +M+     P  +   ++ IL+  F    ++ +A++V D
Sbjct: 501 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNV---IYTILIGGFCRNGVMSEALKVRD 557

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + GC  D   +  +L+ LCK   + EA +LF EM ER   P    FT+L+ G+ K+G
Sbjct: 558 EMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDG 617

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  +   M     +PD+V YN L+ G+ +  +M    EL  +M  +   PN  SY 
Sbjct: 618 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 677

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C M  + EA R + EM   G EA ++T  T++ G+C++    +  E L +M+ +
Sbjct: 678 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 737

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI+P+ +TY  ++    K+E ++    L+ +M   G +PDV  YNV++    + G ++EA
Sbjct: 738 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEA 797

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             +  +M    ++P   ++  +++G + Q  L EA     EM+ RG +   ++
Sbjct: 798 ELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 850



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 147/590 (24%), Positives = 249/590 (42%), Gaps = 88/590 (14%)

Query: 3   RSSSKALSLLTKHRRFSFAPRPNTTTS-HVESTATTTNQLNSNLVCLKTKEDDCKCNNTT 61
           R+ ++  S L      S AP PN++       T  T+  LN + V     ED  +  + +
Sbjct: 118 RTLTRKTSSLHTKTLLSSAPNPNSSYGIPALQTLETSTTLNPSSV-----EDPNQSTSLS 172

Query: 62  DTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLG 121
           D        S   EK+   LK+      KL  +L++    L   +   V+ +C +   LG
Sbjct: 173 D--------SFLTEKVLLNLKQ-----GKLN-SLRNLLFRLDSVVVVDVLYKCRENLQLG 218

Query: 122 YRYY-MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
            R+     S  PN+ HS   + A+I  L + R+     A                  VIL
Sbjct: 219 QRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQA------------------VIL 260

Query: 181 MRRFASARMVKKA----IEVLDEMP-KYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
                  RMV+K+    +E+++ +   YG C  +  VF  L+    +   ++E  + F  
Sbjct: 261 -------RMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRV 313

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           ++ +             G C                       I   N+LL G  ++G +
Sbjct: 314 LKSK-------------GLCVS---------------------INACNSLLGGLVKVGWV 339

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A+E+ +E+ R G   N  +  ++I ALC+ +K+E       +ME  G   DVVTY TL
Sbjct: 340 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 399

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I+ +C+   ++  +E++DSM  +G+ P   TY  I+    K  +      ++ EM KIG 
Sbjct: 400 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGM 459

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD + YN+++   C+   + +A  +++EM +  + P   SF  ++      GCL +A +
Sbjct: 460 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 519

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           YF++M   GL  AP       L+    R   +  A  V   ++ +GC L+V  +   ++ 
Sbjct: 520 YFRDMKNAGL--APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNG 577

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           L     + EA     +M +  V P   TF  L+ G  K  N   A  + E
Sbjct: 578 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFE 627


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 200/409 (48%), Gaps = 11/409 (2%)

Query: 121 GYRYYMWASKQ---PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF 177
            +R +  AS++   PN V     Y +LI  L K  K    + L E+M  +        ++
Sbjct: 439 AHRIFESASERGCNPNSV----TYCSLIDGLGKKGKIDDAYRLFEKML-DAGHDANPIIY 493

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
             L+R F      +   ++  EM + G  PD  +    +D + K   V++   +F++M+ 
Sbjct: 494 TSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKS 553

Query: 238 -RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
             F P +R ++ L++G  K G+  E   +   M   GF  D   YN ++ G  + GK+  
Sbjct: 554 FGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDK 613

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A+E+L+EM+ K   P   +Y  ++  L ++++++EA   F E +  G E +V+ Y++LI 
Sbjct: 614 AYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLID 673

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           GF K  +ID  Y IL+ M+++G+ PN  T+  +M A  K EE++E +     M+++ C P
Sbjct: 674 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSP 733

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           +   Y+++I   C++ +  +A   W EM+   L P   ++  M+ G    G + +A   F
Sbjct: 734 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLF 793

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           +     G    P   +  AL+  +  A +   A  V+     +GC LNV
Sbjct: 794 ERFKTNG--GIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNV 840



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 209/428 (48%), Gaps = 19/428 (4%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK---PQLITTE 175
           +L   +++ AS   +     D Y A++  LS      A+  ++EEM       P      
Sbjct: 89  SLAAPFFLLASASSSQPLPPDAYNAVLPFLS--HDLAALEKVLEEMSHLGYGLPNPACAA 146

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +   L+R    +R ++ A  V+  M      P    +  L+ AL +    + A +L  +M
Sbjct: 147 LVATLVR----SRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQM 202

Query: 236 RE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           ++  ++ S+  FT+L+    +EG++  A  ++ ++K +  EPDIV+YN  +  + + G +
Sbjct: 203 QDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSV 262

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV---VTY 351
             A++   E++  G  P+  SYT ++  LC+  ++ EA   F +ME    E DV     Y
Sbjct: 263 DMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQME---AERDVPCAYAY 319

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            T+I G+  + + D  Y++L+ + +RG +P+ +++  I+    KK +++E + L   M+K
Sbjct: 320 NTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK 379

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
               P++S YN++I + C  G + EA  + +EME A L P   S  +MV        L E
Sbjct: 380 -DAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEE 438

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   F+    RG    P   T  +L++ L +  K++ A  ++  ++  G + N   +T  
Sbjct: 439 AHRIFESASERG--CNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSL 496

Query: 532 IHSLFSNG 539
           I + F +G
Sbjct: 497 IRNFFMHG 504



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/529 (23%), Positives = 239/529 (45%), Gaps = 45/529 (8%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRC----GDAGNLGYRYYMWASKQPNYVHSYDV-YRA 143
           P L L  +  G  L P +   + N C    G AG++   +  +   + + +   DV Y +
Sbjct: 229 PALALVDEVKGSCLEPDIV--LYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTS 286

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           ++  L K  + G    L  +M  E+  +     +  ++  + SA     A ++L+ + + 
Sbjct: 287 MVWVLCKAGRLGEAEELFGQMEAER-DVPCAYAYNTMIMGYGSAERFDDAYKLLERLRER 345

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           GC P    F  +L  L K   V EA  LFD M++  KP++  +  ++   C  G++ EA 
Sbjct: 346 GCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAY 405

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +  +M+ AG  P+++  N ++    +  ++ +A  + +    +GC+PN+ +Y  LI  L
Sbjct: 406 KIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGL 465

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            +  K+++A R F +M  +G +A+ + YT+LI  F    + +  ++I   MI+RG  P+ 
Sbjct: 466 GKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPD- 524

Query: 384 LTYLHI-MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           LT L+  M    K  E+E+   +  +M+  G +PDV +Y+++I    K G+ +E  N++ 
Sbjct: 525 LTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQ 584

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTL-------- 493
            M     +    ++  +V G    G + +A E  +EM V     +   YG++        
Sbjct: 585 AMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKID 644

Query: 494 ------------------------KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
                                    +L++   +  +++ A  +   ++ KG   NVY W 
Sbjct: 645 RLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 704

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL--YNR 576
             + +L     + EA      M +    P   T++ L+ GL ++  YN+
Sbjct: 705 SLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNK 753



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 35/269 (13%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLIT------------ 173
           A  Q  +      Y A++  L K  K    + ++EEM+ +   P + T            
Sbjct: 585 AMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKID 644

Query: 174 ----------------TEVFVI----LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFG 213
                            E+ VI    L+  F     + +A  +L+EM K G  P+ + + 
Sbjct: 645 RLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 704

Query: 214 CLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
            L+DAL K   + EA   F  M+E +  P+   ++ L+ G C+  K  +A     +M+  
Sbjct: 705 SLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQ 764

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  P++V Y  ++SG A++G +TDA+ L +  +  G  P++ S+  LI+ +    +  EA
Sbjct: 765 GLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEA 824

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKS 361
            + F E    GC  +V T  +L+    K+
Sbjct: 825 YQVFEETRLRGCRLNVKTCISLLDALNKT 853


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 189/363 (52%), Gaps = 7/363 (1%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           E+  ++    F +++ RF+      +A+     +   G EP+   F C+++ LCK  S+K
Sbjct: 233 ERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIK 292

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNL 284
           +A ++ +EM  + +KP++   TSL+ G CK+G   +A  + +++ +    +P+++ Y  +
Sbjct: 293 QAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAM 352

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +SGY +  K+  A  LL  M+ +G  PN N+YT LI   C+    E A      M   G 
Sbjct: 353 ISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGF 412

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             ++ TY  +++G CK  ++   Y++L+   Q G+ P++ TY  +M  H K+E + + + 
Sbjct: 413 SPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALA 472

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  +M KIG  PD+ +Y  +I + C+   +KE+   + E     + P   ++  M+ G+ 
Sbjct: 473 LFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYC 532

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG---C 521
            +G L  A ++F  +   G   AP   T  A+++ L +  K + A+ ++  ++ KG   C
Sbjct: 533 REGNLTLAMKFFHRLSDHG--CAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPC 590

Query: 522 ELN 524
           E+ 
Sbjct: 591 EVT 593



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 222/509 (43%), Gaps = 56/509 (11%)

Query: 116 DAGNL-GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
           DAG++    ++ WA   P + H   +Y     SL   R              EK      
Sbjct: 92  DAGSMVTLSFFHWAIGYPKFRHFMRLYIVCAMSLIGNRN------------SEK----AC 135

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           EV   ++  F+    +K+A+E++ EM   G  P+      ++    +   V+ A  LF+E
Sbjct: 136 EVMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEE 195

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEA-KYVLVQMK---------------------- 270
           M  R  +P    +  ++  +CK G ++EA K++ V ++                      
Sbjct: 196 MCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGY 255

Query: 271 ------------DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
                       D G EP+++ +  ++ G  + G +  AFE+L+EM  KG  PN  ++T 
Sbjct: 256 TTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTS 315

Query: 319 LIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           LI  LC+    E+A R F+++ RS   + +V+TYT +ISG+C+  K++R   +L  M ++
Sbjct: 316 LIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQ 375

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G++PN  TY  ++  H K    E   +LM  M   G  P++  YN ++   CK G ++EA
Sbjct: 376 GLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEA 435

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  +     L P   ++ +++     Q  + +A   F +M+  G+   P   +   L+
Sbjct: 436 YKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGI--QPDIHSYTTLI 493

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               R  +++ ++  +   V  G       +T  I      G++  A  +   + D    
Sbjct: 494 AVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCA 553

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           P   T+  ++ GL K   R  A  + + +
Sbjct: 554 PDSITYGAIISGLCKQSKRDEARSLYDSM 582



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 131/275 (47%), Gaps = 4/275 (1%)

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
            +R ++   +  N+  +   Y A+I    +  K      L+  M KE+  +  T  +  L
Sbjct: 329 AFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRM-KEQGLVPNTNTYTTL 387

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERF 239
           +     A   ++A ++++ M   G  P+   +  +++ LCK   V+EA K+  D  +   
Sbjct: 388 IDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGL 447

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KP    +  L+   CK+  + +A  +  +M   G +PDI  Y  L++ + +  +M ++  
Sbjct: 448 KPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEM 507

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
             +E  R G  P   +YT +I   CR   +  A + F  +   GC  D +TY  +ISG C
Sbjct: 508 FFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLC 567

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
           K  K D    + DSMI++G++P ++T   I LA+E
Sbjct: 568 KQSKRDEARSLYDSMIEKGLVPCEVT--RITLAYE 600



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 6/234 (2%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASA 187
           K+   V + + Y  LI    K   F   + LM  M  E   P L T    V         
Sbjct: 373 KEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIV---NGLCKR 429

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHF 246
             V++A ++L++  + G +PD+F +  L+   CK  ++++A  LF++M +   +P +  +
Sbjct: 430 GRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSY 489

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T+L+  +C+E ++ E++    +    G  P    Y +++ GY + G +T A +    +  
Sbjct: 490 TTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSD 549

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            GC P++ +Y  +I  LC+  K +EA   +  M   G     VT  TL   +CK
Sbjct: 550 HGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 197/408 (48%), Gaps = 7/408 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  IT   FV           V  A++V+D M + G +PD F +  +++ LCKN  ++E
Sbjct: 283 EPDQITYNTFV---NGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 228 AAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  + ++M +R   P +  F +L+   C   +L EA  +  Q+   G  PD+  +N L++
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              ++G    A  L +EM+  GC P+  +Y  LI  LC + K+ +A     +ME +GC  
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             +TY T+I G CK  +I+   E+ D M  +GI  N +T+  ++    K +++++  EL+
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 519

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M   G  P+   YN ++   CK G++K+A ++   M A        ++  +++G    
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G    A +  + M  +G+   P+      +L SL R   +  A  ++  +   G   +  
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPK--AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDAL 637

Query: 527 AWTIWIHSLF-SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            + I    L    G +KEA  + L+M+D   +P+  +F  L  GL  L
Sbjct: 638 TYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 193/394 (48%), Gaps = 5/394 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
           +L+  +     V+ A+  + +    G EPD+  +   ++ LC+N  V  A K+ D M +E
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P +  +  ++   CK G+L EAK +L QM D G  PDI  +N L++      ++ +A
Sbjct: 316 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA 375

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +L +++  KG  P+  ++ +LI ALC++     A R F EM+ SGC  D VTY TLI  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C   K+ +  ++L  M   G   + +TY  I+    KK  +EE  E+  +M   G   +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              +N +I   CK  ++ +A  + N+M +  L P   ++  ++  +  QG + +A +  +
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 478 EMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M   G  +    YGTL   +N L +A + ++A  V   +  KG      A+   + SLF
Sbjct: 556 TMTANGFEVDVVTYGTL---INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLF 612

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              ++++A S   +M +    P   T+  + RGL
Sbjct: 613 RRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 646



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 225/456 (49%), Gaps = 18/456 (3%)

Query: 140 VYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           VY  L+  L   SKM+   +V++ M   R  KP ++T   F  LM+    A  V+ A+ +
Sbjct: 148 VYNHLLNVLVEGSKMKLLESVYSEMGA-RGIKPDVVT---FNTLMKALCRAHQVRTAVLM 203

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCK 255
           L+EM   G  PDE  F  L+    +  S++ A ++   M E    + +     L+ G+CK
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++ +A   + Q    GFEPD + YN  ++G  Q   +  A +++  M ++G DP+  +
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++  LC+  ++EEA     +M   GC  D+ T+ TLI+  C   +++   ++   + 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G+ P+  T+  ++ A  K  +    + L  EM+  GC PD   YN +I   C LG+L 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+++  +ME+      T ++  ++ G   +  + EA E F +M  +G+  +    T   
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SRNAITFNT 501

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM---- 551
           L++ L + +K++ A ++ + ++++G + N   +   +      G +K+A      M    
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            + DV+    T+  L+ GL K    Q+A ++   +R
Sbjct: 562 FEVDVV----TYGTLINGLCKAGRTQVALKVLRGMR 593



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 228/498 (45%), Gaps = 7/498 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLS 149
           L  AL        P + E +I + G  G L     + A  ++  +     V  + + S  
Sbjct: 61  LNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYE 120

Query: 150 KMRKFG-AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
             + F  AV  ++ +++        T V+  L+        +K    V  EM   G +PD
Sbjct: 121 GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPD 180

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
              F  L+ ALC+   V+ A  + +EM  R   P    FT+L+ G+ +EG +  A  V  
Sbjct: 181 VVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKA 240

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M + G     V  N L++GY ++G++ DA   +++    G +P+  +Y   +  LC+ +
Sbjct: 241 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 300

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
            +  A +    M + G + DV TY  +++  CK+ +++    IL+ M+ RG LP+  T+ 
Sbjct: 301 HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFN 360

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++ A      LEE ++L  ++   G  PDV  +N++I   CK+G+   A+ ++ EM+ +
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG-TLKALLNSLLRAQKV 506
             +P   ++  ++      G L +A +  K+M   G    P+   T   +++ L +  ++
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG---CPRSTITYNTIIDGLCKKMRI 477

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           E A++V+  +  +G   N   +   I  L  +  + +A      M+   + P   T+  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 567 MRGLKKLYNRQIAAEITE 584
           +    K  + + AA+I E
Sbjct: 538 LTHYCKQGDIKKAADILE 555


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 222/451 (49%), Gaps = 27/451 (5%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           RPG  ER++      G            QPN V     Y  L++ L K+ ++     L+ 
Sbjct: 25  RPGDCERLLETMAARG-----------IQPNVVS----YNGLLEGLCKLERWHEAEELVR 69

Query: 163 EM----RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           +M     +  P L+T   +  L+  +  A  V+++ E+L E+   G  PD  ++  ++ +
Sbjct: 70  DMISRGGRSTPDLVT---YSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMAS 126

Query: 219 LCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
           LCK++ + EA +L +EM R    P+L  F +L+ G C+E  L  A  +L  M  +G + D
Sbjct: 127 LCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKAD 186

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V YN L+ G  + G++ +A +LL+ M+  GC P+  +Y+  +  LC+  K+  A++   
Sbjct: 187 VVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLE 246

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIMLAHEKK 396
           +M  S  + +VVTY T++ G CKS KID   E+++ M    G   N + Y  ++    K 
Sbjct: 247 QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
              +E   +M  M + GC PDV  Y+ ++   CK G+++EAV    EM      P   ++
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLS---APQYGTLKALLNSLLRAQKVEMAKDVW 513
             +VHG    G L EA    +EM   G       P   T  AL+  L +A +++ A   +
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFF 426

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             + ++GC+ +  +++  +  L  +G   +A
Sbjct: 427 QRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 186/381 (48%), Gaps = 11/381 (2%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P  +T   F  L+  F+          +L+ M   G +P+   +  LL+ LCK     EA
Sbjct: 8   PNSVT---FNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 229 AKLFDEMRER---FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            +L  +M  R     P L  +++LL G+CK GK+ E++ +L ++   G  PD ++Y  ++
Sbjct: 65  EELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVM 124

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           +   +  ++ +A ELL+EM R GC P   ++  LI   CR + +E A+     M  SG +
Sbjct: 125 ASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVK 184

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
           ADVVTY TL+ G CK+ ++    ++L+ M   G  P+ + Y   +    K  ++    ++
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQV 244

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD--SFVVMVHGF 463
           + +MR     P+V  YN ++   CK G++  A+ +  +M A+S   G +   +  +V G 
Sbjct: 245 LEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQM-ASSDGCGLNVVGYSTVVDGL 303

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G   EA    + M   G    P   T  +L+N L +A K+E A +    +  +GC+ 
Sbjct: 304 CKLGRTQEARSVMEAMARAG--CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKP 361

Query: 524 NVYAWTIWIHSLFSNGHVKEA 544
           N   +   +H L S G + EA
Sbjct: 362 NAVTYCSLVHGLCSCGRLAEA 382



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 172/362 (47%), Gaps = 43/362 (11%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M   G  P+ V +N L++G+++ G+  D   LL+ M  +G  PN  SY  L++ LC++E+
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 329 MEEANRAFVEMERSGCEA--DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
             EA     +M   G  +  D+VTY+TL+SG+CK+ K++   E+L  +I RG+ P+ L Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVP------------------------------ 416
             +M +  K   L E +EL+ EM + GC P                              
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 417 -----DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
                DV  YN ++   CK G L+EA  +   M+A+  +P   ++   V+G    G ++ 
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTI 530
           A +  ++M  R     P   T   +L+ L ++ K++ A ++   + +  GC LNV  ++ 
Sbjct: 241 AHQVLEQM--RDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYST 298

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            +  L   G  +EA S    M  A   P   T++ L+ GL K    +   E  E VR+MA
Sbjct: 299 VVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE---EAVEAVREMA 355

Query: 591 AE 592
            E
Sbjct: 356 ME 357


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 197/408 (48%), Gaps = 7/408 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  IT   FV           V  A++V+D M + G +PD F +  +++ LCKN  ++E
Sbjct: 283 EPDQITYNTFV---NGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 228 AAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  + ++M +R   P +  F +L+   C   +L EA  +  Q+   G  PD+  +N L++
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              ++G    A  L +EM+  GC P+  +Y  LI  LC + K+ +A     +ME +GC  
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             +TY T+I G CK  +I+   E+ D M  +GI  N +T+  ++    K +++++  EL+
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 519

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M   G  P+   YN ++   CK G++K+A ++   M A        ++  +++G    
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G    A +  + M  +G+   P+      +L SL R   +  A  ++  +   G   +  
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPK--AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDAL 637

Query: 527 AWTIWIHSLF-SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            + I    L    G +KEA  + L+M+D   +P+  +F  L  GL  L
Sbjct: 638 TYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 212/469 (45%), Gaps = 45/469 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+K+L +  +      ++EEM  R   P   T   F  LM+ F     ++ A+ V  
Sbjct: 184 FNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETT---FTTLMQGFVEEGSIEAALRVKA 240

Query: 199 EMPKYGC-----------------------------------EPDEFVFGCLLDALCKNS 223
            M + GC                                   EPD+  +   ++ LC+N 
Sbjct: 241 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 300

Query: 224 SVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            V  A K+ D M +E   P +  +  ++   CK G+L EAK +L QM D G  PDI  +N
Sbjct: 301 HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFN 360

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++      ++ +A +L +++  KG  P+  ++ +LI ALC++     A R F EM+ S
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  D VTY TLI   C   K+ +  ++L  M   G   + +TY  I+    KK  +EE 
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            E+  +M   G   +   +N +I   CK  ++ +A  + N+M +  L P   ++  ++  
Sbjct: 481 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 540

Query: 463 FLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           +  QG + +A +  + M   G  +    YGTL   +N L +A + ++A  V   +  KG 
Sbjct: 541 YCKQGDIKKAADILETMTANGFEVDVVTYGTL---INGLCKAGRTQVALKVLRGMRIKGM 597

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
                A+   + SLF   ++++A S   +M +    P   T+  + RGL
Sbjct: 598 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 646



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 225/456 (49%), Gaps = 18/456 (3%)

Query: 140 VYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           VY  L+  L   SKM+   +V++ M   R  KP ++T   F  LM+    A  V+ A+ +
Sbjct: 148 VYNHLLNVLVEGSKMKLLESVYSEMGA-RGIKPDVVT---FNTLMKALCRAHQVRTAVIM 203

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCK 255
           L+EM   G  PDE  F  L+    +  S++ A ++   M E    + +     L+ G+CK
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++ +A   + Q    GFEPD + YN  ++G  Q   +  A +++  M ++G DP+  +
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++  LC+  ++EEA     +M   GC  D+ T+ TLI+  C   +++   ++   + 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G+ P+  T+  ++ A  K  +    + L  EM+  GC PD   YN +I   C LG+L 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+++  +ME+      T ++  ++ G   +  + EA E F +M  +G+  +    T   
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SRNAITFNT 501

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM---- 551
           L++ L + +K++ A ++ + ++++G + N   +   +      G +K+A      M    
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            + DV+    T+  L+ GL K    Q+A ++   +R
Sbjct: 562 FEVDVV----TYGTLINGLCKAGRTQVALKVLRGMR 593



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 228/498 (45%), Gaps = 7/498 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLS 149
           L  AL        P + E +I + G  G L     + A  ++  +     V  + + S  
Sbjct: 61  LNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYE 120

Query: 150 KMRKFG-AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
             + F  AV  ++ +++        T V+  L+        +K    V  EM   G +PD
Sbjct: 121 GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPD 180

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
              F  L+ ALC+   V+ A  + +EM  R   P    FT+L+ G+ +EG +  A  V  
Sbjct: 181 VVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKA 240

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M + G     V  N L++GY ++G++ DA   +++    G +P+  +Y   +  LC+ +
Sbjct: 241 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 300

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
            +  A +    M + G + DV TY  +++  CK+ +++    IL+ M+ RG LP+  T+ 
Sbjct: 301 HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFN 360

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++ A      LEE ++L  ++   G  PDV  +N++I   CK+G+   A+ ++ EM+ +
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG-TLKALLNSLLRAQKV 506
             +P   ++  ++      G L +A +  K+M   G    P+   T   +++ L +  ++
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG---CPRSTITYNTIIDGLCKKMRI 477

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           E A++V+  +  +G   N   +   I  L  +  + +A      M+   + P   T+  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 567 MRGLKKLYNRQIAAEITE 584
           +    K  + + AA+I E
Sbjct: 538 LTHYCKQGDIKKAADILE 555


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 232/489 (47%), Gaps = 8/489 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNL--GYRYYMWASKQ 131
           V    R+L+   S  PKLE  L+H   VL P    R + R    G++   + ++ WA +Q
Sbjct: 62  VRDTCRLLELRESWSPKLEAQLRHLLRVLSPPQV-RAVLRAQARGDVRRAFEFFRWADRQ 120

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
             Y H+ +V+  ++  LS  R       ++  M +   +   TE F  LM  ++ A  ++
Sbjct: 121 WRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRR-GTEQFAQLMLSYSRAGKLR 179

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLL 250
            A+ VL  M K GC PD  +    ++ L     V +A +  + MR    +P +  +  L+
Sbjct: 180 SAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLI 239

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GC 309
            G C   ++V+A  ++  M   G  PD + Y  ++S   +  ++ +   LL+ MR   G 
Sbjct: 240 KGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGL 299

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y VLI  L +    +EA     E E      D V Y+ ++  FC + ++    E
Sbjct: 300 FPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKE 359

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           I+  MI +G  P+ +TY  ++    +  EL++  ++M  M K  C P+   +  ++   C
Sbjct: 360 IVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLC 419

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K+G+  EA  + N+ E    +P   ++ V++HGF  +G L E+C+   +M+ +G    P 
Sbjct: 420 KVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFF--PT 477

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
              +  L+++L + +K   AKD      +KGC +NV  +T  IH     G ++ A S   
Sbjct: 478 TVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 550 DMMDADVMP 558
           DM  ++  P
Sbjct: 538 DMYLSNRHP 546



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 166/346 (47%), Gaps = 37/346 (10%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--- 236
           L++    AR V  A+E++  M + GC PD+  +  ++  LCK   V+E   L   MR   
Sbjct: 238 LIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDA 297

Query: 237 ----------------------------------ERFKPSLRHFTSLLYGWCKEGKLVEA 262
                                             +RF+     ++++++ +C  G++ EA
Sbjct: 298 GLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEA 357

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           K ++ +M   G +PD+V Y+ ++ G+ ++G++  A +++K M +  C PN  ++T L+  
Sbjct: 358 KEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNG 417

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC++ K  EA     + E        +TY+ ++ GF +  K+    +++  M+Q+G  P 
Sbjct: 418 LCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPT 477

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +    ++ A  K  +  E  + M + +  GC  +V N+  VI    + G+L+ A+++ +
Sbjct: 478 TVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           +M  ++  P   ++ V+V     +G L EA    ++M+ RG+L  P
Sbjct: 538 DMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTP 583



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 172/382 (45%), Gaps = 41/382 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L+K    G     +E +R+ E  +    EV +  ++  F     + +A E++ 
Sbjct: 306 YNVLIHGLAK---HGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVG 362

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   GC+PD   +  ++D  C+   + +A K+   M +   KP+    T+LL G CK G
Sbjct: 363 EMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVG 422

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  +L + ++  + P  + Y+ ++ G+ + GK+ ++ +++ +M +KG  P      
Sbjct: 423 KTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEIN 482

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI ALC+  K  EA     + +  GC  +VV +TT+I GF +   ++    ++D M   
Sbjct: 483 LLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLS 542

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV------------------- 418
              P+ +TY  ++ A  KK  L+E   L+ +M   G +P                     
Sbjct: 543 NRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDL 602

Query: 419 --------------SNYNVVIRLACKLGELKEAVN-VWNEMEAASLSPGTDSFVVMVHGF 463
                         S YN V+   C  G+L EA + ++  +  AS+       ++M   F
Sbjct: 603 LNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILM-ESF 661

Query: 464 LGQGCLIEACEYFKEMVGRGLL 485
           L +G  ++A      M  R L+
Sbjct: 662 LNRGLGLQAYNVACRMFRRNLI 683


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 178/352 (50%), Gaps = 6/352 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V     Y  LI    +   F   + L +EM  EK    T  ++ IL+R       +
Sbjct: 190 SPNVV----TYGTLIDGCCRQGDFLKAFRLFDEM-IEKKIFPTVVIYTILIRGLCGESRI 244

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSL 249
            +A  +   M   G  P+ + +  ++D  CK + VK+A +L+ EM  +   P++  F  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGIL 304

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CK  ++V A+  L+ M   G  P+I VYN L+ GY + G +++A  L  E+ +   
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI 364

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y++LI+ LC +++MEEA+    EM++ G   + VTY TLI G+CK   +++  E
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M ++GI PN +T+  ++  + K  ++E  + L  EM   G +PDV  Y  +I    
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHF 484

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           K G  KEA  +  EM+ A L P   +   ++ G    G + +A + F    G
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTG 536



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 206/444 (46%), Gaps = 35/444 (7%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           Y  +  + R LI+ L   R+     ++   + + +    T  VF +L+  F+   +V++A
Sbjct: 86  YAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEA 145

Query: 194 IEV---LDEMPKY-----------------------------GCEPDEFVFGCLLDALCK 221
           + V   +D +P                               G  P+   +G L+D  C+
Sbjct: 146 LWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCR 205

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
                +A +LFDEM E+   P++  +T L+ G C E ++ EA+ +   M+++G  P++  
Sbjct: 206 QGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN ++ GY ++  +  A EL +EM   G  PN  ++ +LI  LC+ ++M  A +  ++M 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   ++  Y  LI G+CK+  +     +   + +  ILP+  TY  ++      + +E
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E   L+ EM+K G +P+   YN +I   CK G +++A+ V ++M    + P   +F  ++
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G+   G +  A   + EMV +GLL  P      AL++   +    + A  +   +   G
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLL--PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAG 503

Query: 521 CELNVYAWTIWIHSLFSNGHVKEA 544
              NV+  +  I  L  +G + +A
Sbjct: 504 LHPNVFTLSCLIDGLCKDGRISDA 527



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 212/489 (43%), Gaps = 50/489 (10%)

Query: 117 AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
             N     +   S++ +   +  +Y A+I  L+  + +     LM ++            
Sbjct: 49  TANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDL------------ 96

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
            +  ++    +R+      VL  +      P+  VFG L+ A  +   V+EA  ++ +M 
Sbjct: 97  -IQCLQNSRRSRICCSVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMD 153

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
               P+++    +L G  K+G+      V   M   G  P++V Y  L+ G  + G    
Sbjct: 154 --VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLK 211

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           AF L  EM  K   P    YT+LI+ LC   ++ EA   F  M  SG   ++ TY T++ 
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G+CK   + +  E+   M+  G+LPN +T+  ++    K +E+    + + +M   G VP
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           ++  YN +I   CK G L EA+++ +E+E   + P   ++ +++ G  G   + EA    
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 477 KEMVGRGLLS---------------------------------APQYGTLKALLNSLLRA 503
           +EM  +G L                                   P   T   L++   +A
Sbjct: 392 QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            K+E A  +++ +V KG   +V A+T  I   F +G+ KEA     +M +A + P   T 
Sbjct: 452 GKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 564 AKLMRGLKK 572
           + L+ GL K
Sbjct: 512 SCLIDGLCK 520



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 37/248 (14%)

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGW--CK-EGKLVEAKYVLVQMKDAGFEPDIV 279
           SS      LF  +  R  PS     SL++    C  +  LVE K +   + + GFEP I 
Sbjct: 608 SSNTSKVLLFFRILLRKNPSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIF 667

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           +  +L+S Y+  G + DA  +  E+  K    N  S+T +I A    ++  +A + F +M
Sbjct: 668 LQTSLISMYSATGNVADAHNMFDEIPSK----NLISWTSVISAYVDNQRPNKALQLFRQM 723

Query: 340 ERSGCEADVVTYTTLIS---------------GFCKSRKID--------------RCYEI 370
           +    + D+VT T  +S                + + R +D              +C EI
Sbjct: 724 QMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEI 783

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLAC 429
             +     +LPN +T++ +++A      +EE  +    M++     P +S++  ++ L C
Sbjct: 784 GTARRFSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLC 843

Query: 430 KLGELKEA 437
           + G L EA
Sbjct: 844 RAGLLTEA 851


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 210/438 (47%), Gaps = 7/438 (1%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           +VH+ +   +L    ++  K   ++A M  MR  K  ++T   F I++        +KKA
Sbjct: 155 HVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRI-KSSVVT---FNIMINVLCKEGKLKKA 210

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
            E +  M   G +P+   +  ++   C    V+ A  +FD M+ R  KP    + S + G
Sbjct: 211 KEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISG 270

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CKEGKL EA  +L +MK+ G  P  V YN L+ GY   G +  AF+   +M R+G  P 
Sbjct: 271 MCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPT 330

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
            ++Y +LI AL    KM+EA+    EM   G   D VTY  LI+G+C+   + + + + D
Sbjct: 331 VSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHD 390

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI +GI P ++TY  ++    K+  +++  +L  ++ + G  PD+  +N +I   C  G
Sbjct: 391 EMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANG 450

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +  A  +  EM+   + P   +F  ++ G   +G +  A E  +EM  RG+   P + +
Sbjct: 451 NMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI--KPDHIS 508

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              L++   +   ++ A  V   +++ G    +  +   I  L  N     A     +M+
Sbjct: 509 YNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMI 568

Query: 553 DADVMPQPDTFAKLMRGL 570
              + P  +T+  L+ G+
Sbjct: 569 SKGITPNDNTYLSLIEGI 586



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 201/434 (46%), Gaps = 34/434 (7%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T  ++ +L+R     +    A E  D M   G  P       +L    K++  ++A  L+
Sbjct: 120 TYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLY 179

Query: 233 DEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            EM R R K S+  F  ++   CKEGKL +AK  +  M+  G +P++V YN ++ GY   
Sbjct: 180 AEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSR 239

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G++  A  +   M+ +G  P++ +Y   I  +C+  K+EEA+    +M+  G     VTY
Sbjct: 240 GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTY 299

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            TLI G+C    ++  ++  D M++ G++P   TY  ++ A     +++E   ++ EM +
Sbjct: 300 NTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSE 359

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G VPD   YN++I   C+ G +K+A  + +EM +  + P   ++  +++    +G + +
Sbjct: 360 KGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQ 419

Query: 472 ACEYFKEMVGRGLLS---------------------------------APQYGTLKALLN 498
           A + F+++V +G+                                    P   T   L+ 
Sbjct: 420 ADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQ 479

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R  KVE A+++   + ++G + +  ++   I      G +K+A     +M+     P
Sbjct: 480 GRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNP 539

Query: 559 QPDTFAKLMRGLKK 572
              T+  L++GL K
Sbjct: 540 TLLTYNALIQGLCK 553



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 191/404 (47%), Gaps = 14/404 (3%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
           ++  L+ A C+     +A + FD M+ +   P +     +L  + K  +  +A  +  +M
Sbjct: 123 LYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEM 182

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
                +  +V +N +++   + GK+  A E +  M   G  PN  +Y  +I   C   ++
Sbjct: 183 FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRV 242

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           E A   F  M+  G + D  TY + ISG CK  K++    +L+ M + G+ P  +TY  +
Sbjct: 243 EGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTL 302

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR---LACKLGELKEAVNVWNEMEA 446
           +  +  K  LE   +   +M + G +P VS YN++I    L CK   + EA  +  EM  
Sbjct: 303 IDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCK---MDEADGIIKEMSE 359

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             L P + ++ ++++G+   G + +A     EM+ +G+   P   T  +L+  L +  ++
Sbjct: 360 KGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGI--QPTRVTYTSLIYVLSKRGRM 417

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           + A D++  IV KG   ++  +   I    +NG++  A +   +M    V+P   TF  L
Sbjct: 418 KQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTL 477

Query: 567 MRGLKKLYNRQIAAEITEKVRKMAAE-RQITFKM----YKRRGE 605
           M+G  +    + A E+ E+++    +   I++      Y +RG+
Sbjct: 478 MQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGD 521



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 147/308 (47%), Gaps = 2/308 (0%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V+Y+ L+    ++ +  DAFE    M+ KG  P+ ++   ++    +  + E+A   + E
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M R   ++ VVT+  +I+  CK  K+ +  E +  M   GI PN +TY  I+  +  +  
Sbjct: 182 MFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGR 241

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +E    +   M+  G  PD   Y   I   CK G+L+EA  +  +M+   L P   ++  
Sbjct: 242 VEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNT 301

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G+  +G L  A +Y  +MV  GL+  P   T   L+++L    K++ A  +   +  
Sbjct: 302 LIDGYCNKGNLEMAFDYRDKMVREGLM--PTVSTYNMLIHALFLDCKMDEADGIIKEMSE 359

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
           KG   +   + I I+     G+VK+A +   +M+   + P   T+  L+  L K    + 
Sbjct: 360 KGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQ 419

Query: 579 AAEITEKV 586
           A ++ EK+
Sbjct: 420 ADDLFEKI 427



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 12/220 (5%)

Query: 113 RCGDAGNLGYRYYMWASK--QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-- 168
           RCG+       +    SK  QP  V     Y +LI  LSK  +      L E++ ++   
Sbjct: 378 RCGNVKKAFTLHDEMISKGIQPTRV----TYTSLIYVLSKRGRMKQADDLFEKIVRKGIF 433

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P LI   +F  L+    +   + +A  +L EM +    PDE  F  L+   C+   V+ A
Sbjct: 434 PDLI---MFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAA 490

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            +L +EM+ R  KP    + +L+ G+ K G + +A  V  +M   GF P ++ YN L+ G
Sbjct: 491 RELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQG 550

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
             +  +   A +LLKEM  KG  PN N+Y  LI+ +  +E
Sbjct: 551 LCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNVE 590


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 144/515 (27%), Positives = 230/515 (44%), Gaps = 68/515 (13%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           W S+ P Y HS   Y +L+  L      G V                   F I +    S
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVV-------------------FKIRLLMIKS 152

Query: 187 ARMVKKAIEVLDEMPKYGCEPDE-------FVFGC---LLDALCKNSSVKEAAKLFDEMR 236
              V  A+ VLD   K     DE        + GC   LL++L +   V E  +++ EM 
Sbjct: 153 CDSVGDALYVLDLCRKMN--KDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEML 210

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E +  P++  +  ++ G+CK G + EA   + ++ +AG +PD   Y +L+ GY Q   + 
Sbjct: 211 EDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLD 270

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            AF++  EM  KGC  N  +YT LI  LC   +++EA   FV+M+   C   V TYT LI
Sbjct: 271 SAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
              C S +      ++  M + GI PN  TY  ++ +   + + E+  EL+G+M + G +
Sbjct: 331 KSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLM 390

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL----------- 464
           P+V  YN +I   CK G +++AV+V   ME+  LSP T ++  ++ G+            
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL 450

Query: 465 --------------------GQ---GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
                               GQ   G    A      M  RGL+  P   T  ++++SL 
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV--PDQWTYTSMIDSLC 508

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           ++++VE A D++  +  KG   NV  +T  I      G V EA      M+  + +P   
Sbjct: 509 KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSL 568

Query: 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           TF  L+ GL      + A  + EK+ K+  +  ++
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 193/427 (45%), Gaps = 31/427 (7%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y +LI    +   F + + L+  M  ++  +     +  ++     ++ V++A ++ D 
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMN-DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDS 522

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           + + G  P+  ++  L+D  CK   V EA  + ++M  +   P+   F +L++G C +GK
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  +  +M   G +P +     L+    + G    A+   ++M   G  P+A++YT 
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
            IQ  CR  ++ +A     +M  +G   D+ TY++LI G+    + +  +++L  M   G
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702

Query: 379 ILPNQLTYLHIM-------LAHEKKEELEEC-----------VELMGEMRKIGCVPDVSN 420
             P+Q T+L ++          +K  E E C           VEL+ +M +    P+  +
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS 762

Query: 421 YNVVIRLACKLGELKEAVNVWNEME-AASLSPGTDSFVVMVHGFLGQGCLI----EACEY 475
           Y  +I   C++G L+ A  V++ M+    +SP    F    +  L   C +    EA + 
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF----NALLSCCCKLKKHNEAAKV 818

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             +M+  G L  PQ  + K L+  L +  + E    V+  ++  G   +  AW I I  +
Sbjct: 819 VDDMICVGHL--PQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGV 876

Query: 536 FSNGHVK 542
              G V+
Sbjct: 877 GKQGLVE 883



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 207/461 (44%), Gaps = 30/461 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN +H+Y V   LI SL    KF     L+ +M ++   P +IT   +  L+  +    
Sbjct: 355 KPN-IHTYTV---LIDSLCSQCKFEKARELLGQMLEKGLMPNVIT---YNALINGYCKRG 407

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           M++ A++V++ M      P+   +  L+   CK S+V +A  + ++M ER   P +  + 
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYN 466

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SL+ G C+ G    A  +L  M D G  PD   Y +++    +  ++ +A +L   + +K
Sbjct: 467 SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G +PN   YT LI   C+  K++EA+    +M    C  + +T+  LI G C   K+   
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             + + M++ G+ P   T   ++    K  + +       +M   G  PD   Y   I+ 
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT 646

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G L +A ++  +M    +SP   ++  ++ G+   G    A +  K M   G    
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG--CE 704

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T  +L+  LL  +  +           KG E  + A +    ++     V E    
Sbjct: 705 PSQHTFLSLIKHLLEMKYGKQ----------KGSEPELCAMS----NMMEFDTVVELLE- 749

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              M++  V P   ++ KL+ G+ ++ N ++A ++ + +++
Sbjct: 750 --KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQR 788



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 167/415 (40%), Gaps = 95/415 (22%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ++I SL K ++      L + + ++   P ++   ++  L+  +  A  V +A  +L
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVV---MYTALIDGYCKAGKVDEAHLML 555

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-------------------------- 231
           ++M    C P+   F  L+  LC +  +KEA  L                          
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615

Query: 232 --FDEMRERF--------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
             FD    RF        KP    +T+ +  +C+EG+L++A+ ++ +M++ G  PD+  Y
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDP------------------------------ 311
           ++L+ GY  +G+   AF++LK MR  GC+P                              
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735

Query: 312 -----------------------NANSYTVLIQALCRMEKMEEANRAFVEMERS-GCEAD 347
                                  NA SY  LI  +C +  +  A + F  M+R+ G    
Sbjct: 736 SNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPS 795

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
            + +  L+S  CK +K +   +++D MI  G LP   +   ++    KK E E    +  
Sbjct: 796 ELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQ 855

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            + + G   D   + ++I    K G ++    ++N ME       + ++ +++ G
Sbjct: 856 NLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 497

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 218/448 (48%), Gaps = 32/448 (7%)

Query: 64  HGSHNEFSHDVEKIFRILKKFHSRLP--KLELALQHSGVVLRPGLTERVINRCGDAGNLG 121
           H  H+  S  +    + L KF    P  ++E AL   G+     L  +V+ R        
Sbjct: 57  HSHHD--SPPLASFIQNLLKFRRDKPTEQIEQALNLIGIHPNNNLVLQVLQRHRSDWKPA 114

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           + ++ W SK  NY  S +VY  +I  L KM+ F  +  +++EM + K + I  E F IL+
Sbjct: 115 FIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQVLDEMSQRK-EFINEETFCILI 173

Query: 182 RRFASARMVKKAIEVLDEMPKYGC--EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           RRF +A  +++AI +     ++G   E D   F  LL  +C+   ++EA  LF     +F
Sbjct: 174 RRFVAAHKLEEAINIFYRREEFGLDNELDSKAFRTLLMWMCRYKHIEEAETLFHRNLNKF 233

Query: 240 K--PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           +    ++ +  +L GWC  G   EAK +           DI+ Y        +  ++ + 
Sbjct: 234 RFCRDIKTWNVILNGWCVLGNTHEAKRLW---------KDIIAY--------KCKEIGNC 276

Query: 298 FELLK-EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           FE+++ ++  + C P+   +  LI  LC  +++ EA + F +M+   C  +V TY +LI 
Sbjct: 277 FEVVQWDVEEESCKPDVVIFNCLIDGLCFKKRIPEALQVFHDMKERDCLPNVATYNSLIK 336

Query: 357 GFCKSRKIDRCYEILDSMIQRG--ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
              K R++++ YE+++ M +R    LPN +TY +++ + +  EE+   +E    M + GC
Sbjct: 337 HLFKIRRMEKVYELVEDMERRSGDCLPNGVTYSYLLQSLKAPEEVPAVLE---RMERNGC 393

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
                  N+++RL  K  +L      W+EME   L P   S+ +M+HG    G   +A  
Sbjct: 394 AMSDDICNLILRLYMKWDDLDGLRKTWDEMERNGLGPDRRSYTIMIHGHYENGRTKDAMR 453

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           YF+EM  +G++  P+   L   +N  L+
Sbjct: 454 YFQEMTSKGIVLEPRTEKLVISMNGQLK 481


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 211/436 (48%), Gaps = 10/436 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L +  +    + L +EM  +   P  IT   +  L+  + S+   K+AI +  
Sbjct: 209 YTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCIT---YNCLLHGYCSSGKPKEAIGIFR 265

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M + G EPD   +  L+  LCKN    EA K+FD M ++  KP    + +LL+G+  EG
Sbjct: 266 KMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEG 325

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LV+   +L  M   G +PD  ++N L+  YA+ G + +A     +MR++G  PN  +Y 
Sbjct: 326 YLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYG 385

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++ ALCR+ K+++A   F  +   G   + V + TLI G C   K D+  E+   MI R
Sbjct: 386 TVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGR 445

Query: 378 GILPNQLTYLHIMLAHEKKEEL-EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           GI PN + + + +L H  KE +      +   M ++    DV  Y  +I   C  G++ E
Sbjct: 446 GICPNTI-FFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDE 504

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +   M    + P   ++  +++G+   G + +AC  F++M  +G+   P       +
Sbjct: 505 ATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGV--NPGIVIYSTI 562

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L+ L + +++  AK+++  ++  G +L +  + I +  L  N    +A     ++   D 
Sbjct: 563 LHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDF 622

Query: 557 MPQPDTFAKLMRGLKK 572
             Q  TF  ++  L K
Sbjct: 623 HLQNRTFNIMIDALLK 638



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 195/399 (48%), Gaps = 8/399 (2%)

Query: 177 FVILMRRFASARMVKKAIEV-LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF--- 232
           F  L++     +    A+++ L  MP  GC P+ F +  LL  LC  +  ++A  L    
Sbjct: 134 FSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTM 193

Query: 233 --DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
             D+ R    P +  +T+++ G  +EG+L +A  +  +M D G  P+ + YN LL GY  
Sbjct: 194 MADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCS 253

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            GK  +A  + ++M R G +P+  +Y  L+  LC+  +  EA + F  M + G + D   
Sbjct: 254 SGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSI 313

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y TL+ G+     + + +++LD M++ G  P+   +  ++ A+ K   ++E +    +MR
Sbjct: 314 YGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMR 373

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + G  P++  Y  V+   C++G++ +A++ ++ + +  L+P    F  ++HG        
Sbjct: 374 QQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWD 433

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A E   EM+GRG+   P       LLN L +   V  AK+++  +V    + +V  +T 
Sbjct: 434 KAEELAVEMIGRGI--CPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTT 491

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            I     +G V EA      M+   V P   T+  ++ G
Sbjct: 492 LIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIING 530



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 194/433 (44%), Gaps = 4/433 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F IL+  +A   MV +A+    +M + G  P+   +G ++DALC+   V +A   FD +
Sbjct: 348 IFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRL 407

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
             E   P+   F +L++G C   K  +A+ + V+M   G  P+ + +N LL+   + G +
Sbjct: 408 ISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMV 467

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           T A  +   M R     +  +YT LI   C   K++EA +    M   G + + VTY T+
Sbjct: 468 TRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTI 527

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I+G+CK+ +I+    +   M  +G+ P  + Y  I+    +   +    EL   M K G 
Sbjct: 528 INGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGI 587

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
              +  YN++++  C+     +A+ +++ +          +F +M+   L  G   EA +
Sbjct: 588 KLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKD 647

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F  ++ RGL+  P   T   ++ SL+    +E   D++  +   GC  +       +  
Sbjct: 648 LFASLLARGLV--PNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGK 705

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L   G V++A  Y   + + +   +  T   L+  +      Q    I EK R  A  R 
Sbjct: 706 LPQKGEVRKAGVYLSKIDENNFSLEASTAESLVFLVSSGKYDQHINSIPEKYRPTAKSRA 765

Query: 595 ITFKMYKRRGERD 607
           + F   K  G  D
Sbjct: 766 V-FSQKKNPGLFD 777



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 120/255 (47%), Gaps = 11/255 (4%)

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI-LDS 373
           +Y+++I    R   ++ A  A   + R+G  A  +T++ L+ G C  ++     +I L  
Sbjct: 98  TYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRR 157

Query: 374 MIQRGILPNQLTYLHIMLA-----HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           M   G  PN  +Y +I+L      +  ++ L     +M +  + GC PDV +Y  VI   
Sbjct: 158 MPALGCTPNAFSY-NILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGL 216

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            + G+L +A  +++EM    +SP   ++  ++HG+   G   EA   F++M   G+   P
Sbjct: 217 LREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGV--EP 274

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   L+  L +  +   A+ V+  +V KG + +   +   +H   + G++ +     
Sbjct: 275 DVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQM-HQL 333

Query: 549 LDMMDADVMPQPDTF 563
           LD+M  +   QPD +
Sbjct: 334 LDVMVRN-GTQPDHY 347



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 104/230 (45%), Gaps = 9/230 (3%)

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECV 403
           AD+ TY+ +I    ++  +D  +  L  +I+ G     +T+  ++  L H+K+      +
Sbjct: 94  ADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDI 153

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA----ASLSPGTDSFVVM 459
            L   M  +GC P+  +YN++++  C     ++A+++ + M A        P   S+  +
Sbjct: 154 ALR-RMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTV 212

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           ++G L +G L +A   F EM+ +G+  +P   T   LL+    + K + A  ++  +   
Sbjct: 213 INGLLREGQLDKAYCLFDEMLDQGM--SPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRD 270

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           G E +V  +   +  L  NG   EA      M+     P    +  L+ G
Sbjct: 271 GVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHG 320


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 204/407 (50%), Gaps = 8/407 (1%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           + + L   L  +++ R  D        + WA     + H+ D+Y  LI +L K ++   +
Sbjct: 98  NSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKM 157

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
             ++EEM++ +  L+T +     MRRFA A   + A+ + D++  YG E +      LLD
Sbjct: 158 RGMLEEMKEAR--LVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLD 215

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   V++A +++ E++    P+   F   ++GWCK  K+ EA + L +MK  G  P 
Sbjct: 216 TLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPC 275

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y+ ++  Y         +ELL EM  +GC  N  +YT ++ +L + E+ EEA +   
Sbjct: 276 VISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAE 335

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKK 396
            M+ +G E D + Y  LI    ++ K+     + +  M  + +LPN  TY  ++  + ++
Sbjct: 336 RMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRR 395

Query: 397 EELEECVELMGEMRKI-GCVPDVSNYNVVIRLACKLGELK-EAVNVWNEM-EAASLSPGT 453
              E+ ++L+ EM+K   C PDV  Y  +++   + G+   +  N+ +EM     LS   
Sbjct: 396 AREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKHHLSLDI 455

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            ++ +++HG         A + F++M+ + +   P+Y T + LL+  
Sbjct: 456 STYSLLIHGLCRANKCDWAYQLFEKMISQDI--KPRYLTCQLLLDEF 500



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/414 (20%), Positives = 166/414 (40%), Gaps = 64/414 (15%)

Query: 180 LMRRFASARMVKKA-IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           L +R  S    KK+ I+ +    + G   DE     L D +C  +S++ +  L  ++ +R
Sbjct: 56  LQQRVPSEFQKKKSDIDFIIAKVQVGSSEDEVFQSLLQDPVC--NSIQLSHDLVYKLLQR 113

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE--PDIV-VYNNLLSGYAQMGKMT 295
           FK   +    + + W +                +GF+  PD+  +  + L    Q+ KM 
Sbjct: 114 FKDDWKSALGV-FRWAESL--------------SGFKHTPDLYDILIDTLGKTKQLVKMR 158

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
              E +KE R    D  A +    ++      + E A R F ++E  G E +  +   L+
Sbjct: 159 GMLEEMKEARLVTLDTVAKA----MRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLL 214

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
              CK +K+++  ++   + +  I PN  T+   +    K  +++E    + EM+  G  
Sbjct: 215 DTLCKEKKVEKARQMYLEL-KSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHR 273

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P V +Y+ +I   C      +   + +EM+A                   QGC      Y
Sbjct: 274 PCVISYSTIILFYCHRCNFNKVYELLDEMDA-------------------QGCPANVITY 314

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
                               ++ SL ++++ E A  +   + + G E +   +   IH+L
Sbjct: 315 ------------------TTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTL 356

Query: 536 FSNGHVKEACS-YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              G V+EA   + ++M    V+P   T+  ++    +    + A ++ E+++K
Sbjct: 357 GRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQK 410


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 176/322 (54%), Gaps = 3/322 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L+  F     V  A+ ++D+M + G +PD   +  ++D+LCK   V +A   F E+ R+ 
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T+L+ G C   +  +A  +L  M      P+++ Y+ LL  + + GK+ +A 
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL +EM R   DP+  +Y+ LI  LC  ++++EAN+ F  M   GC ADVV+Y TLI+GF
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK+++++   ++   M QRG++ N +TY  ++    +  ++++  E   +M   G  PD+
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN+++   C  GEL++A+ ++ +M+   +     ++  ++ G    G + EA   F  
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460

Query: 479 MVGRGLLSAPQYGTLKALLNSL 500
           +  +GL   P   T   +++ L
Sbjct: 461 LSLKGL--KPDIVTYTTMMSGL 480



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 203/428 (47%), Gaps = 8/428 (1%)

Query: 148 LSKMR----KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           LSK R    K      L  +M K +P     + F  L+      +     I +  +M   
Sbjct: 56  LSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGKKMEVL 114

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G   D + F  +++  C    V  A  +  +M +  ++P      SL+ G+C+  ++ +A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             ++ +M + G++PDIV YN ++    +  ++ DAF+  KE+ RKG  PN  +YT L+  
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC   +  +A R   +M +     +V+TY+ L+  F K+ K+    E+ + M++  I P+
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++      + ++E  ++   M   GC+ DV +YN +I   CK   +++ + ++ 
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM    L   T ++  ++ GF   G + +A E+F +M   G+  +P   T   LL  L  
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCD 412

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             ++E A  ++  +  +  +L++  +T  I  +   G V+EA S    +    + P   T
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472

Query: 563 FAKLMRGL 570
           +  +M GL
Sbjct: 473 YTTMMSGL 480



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 196/402 (48%), Gaps = 15/402 (3%)

Query: 180 LMRRFASARM----VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           L  R +  R+    +  AI++  +M K    P    F  LL A+ K         L  +M
Sbjct: 52  LRERLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKM 111

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                +  L  F  ++  +C   ++  A  +L +M   G+EPD V   +L++G+ +  ++
Sbjct: 112 EVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRV 171

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           +DA  L+ +M   G  P+  +Y  +I +LC+ +++ +A   F E+ER G   +VVTYT L
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 231

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ++G C S +      +L  MI++ I PN +TY  ++ A  K  ++ E  EL  EM ++  
Sbjct: 232 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 291

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD+  Y+ +I   C    + EA  +++ M +        S+  +++GF     + +  +
Sbjct: 292 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMK 351

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F+EM  RGL+S     T   L+    +A  V+ A++ +S +   G   +++ + I +  
Sbjct: 352 LFREMSQRGLVSNTV--TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409

Query: 535 LFSNGHVKEACSYCLDM----MDADVMPQPDTFAKLMRGLKK 572
           L  NG +++A     DM    MD D++    T+  ++RG+ K
Sbjct: 410 LCDNGELEKALVIFEDMQKREMDLDIV----TYTTVIRGMCK 447



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 164/341 (48%), Gaps = 11/341 (3%)

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KP 169
           NR  DA +L  +      K P+ V     Y A+I SL K ++    +   +E+ ++  +P
Sbjct: 169 NRVSDAVSLVDKMVEIGYK-PDIV----AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRP 223

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            ++T   +  L+    ++     A  +L +M K    P+   +  LLDA  KN  V EA 
Sbjct: 224 NVVT---YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 230 KLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +LF+EM R    P +  ++SL+ G C   ++ EA  +   M   G   D+V YN L++G+
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +  ++ D  +L +EM ++G   N  +Y  LIQ   +   +++A   F +M+  G   D+
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY  L+ G C + ++++   I + M +R +  + +TY  ++    K  ++EE   L   
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +   G  PD+  Y  ++   C  G L E   ++ +M+   L
Sbjct: 461 LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 197/408 (48%), Gaps = 7/408 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  IT   FV           V  A++V+D M + G +PD F +  +++ LCKN  ++E
Sbjct: 191 EPDQITYNTFV---NGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 247

Query: 228 AAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  + ++M +R   P +  F +L+   C   +L EA  +  Q+   G  PD+  +N L++
Sbjct: 248 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 307

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              ++G    A  L +EM+  GC P+  +Y  LI  LC + K+ +A     +ME +GC  
Sbjct: 308 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 367

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             +TY T+I G CK  +I+   E+ D M  +GI  N +T+  ++    K +++++  EL+
Sbjct: 368 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 427

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M   G  P+   YN ++   CK G++K+A ++   M A        ++  +++G    
Sbjct: 428 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 487

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G    A +  + M  +G+   P+      +L SL R   +  A  ++  +   G   +  
Sbjct: 488 GRTQVALKVLRGMRIKGMRPTPK--AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDAL 545

Query: 527 AWTIWIHSLF-SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            + I    L    G +KEA  + L+M+D   +P+  +F  L  GL  L
Sbjct: 546 TYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 593



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 212/469 (45%), Gaps = 45/469 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+K+L +  +      ++EEM  R   P   T   F  LM+ F     ++ A+ V  
Sbjct: 92  FNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETT---FTTLMQGFVEEGSIEAALRVKA 148

Query: 199 EMPKYGC-----------------------------------EPDEFVFGCLLDALCKNS 223
            M + GC                                   EPD+  +   ++ LC+N 
Sbjct: 149 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 208

Query: 224 SVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            V  A K+ D M +E   P +  +  ++   CK G+L EAK +L QM D G  PDI  +N
Sbjct: 209 HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFN 268

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++      ++ +A +L +++  KG  P+  ++ +LI ALC++     A R F EM+ S
Sbjct: 269 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 328

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  D VTY TLI   C   K+ +  ++L  M   G   + +TY  I+    KK  +EE 
Sbjct: 329 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEA 388

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            E+  +M   G   +   +N +I   CK  ++ +A  + N+M +  L P   ++  ++  
Sbjct: 389 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 448

Query: 463 FLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           +  QG + +A +  + M   G  +    YGTL   +N L +A + ++A  V   +  KG 
Sbjct: 449 YCKQGDIKKAADILETMTANGFEVDVVTYGTL---INGLCKAGRTQVALKVLRGMRIKGM 505

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
                A+   + SLF   ++++A S   +M +    P   T+  + RGL
Sbjct: 506 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 554



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 221/452 (48%), Gaps = 10/452 (2%)

Query: 140 VYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           VY  L+  L   SKM+   +V++ M   R  KP ++T   F  LM+    A  V+ A+ +
Sbjct: 56  VYNHLLNVLVEGSKMKLLESVYSEMGA-RGIKPDVVT---FNTLMKALCRAHQVRTAVLM 111

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCK 255
           L+EM   G  PDE  F  L+    +  S++ A ++   M E    + +     L+ G+CK
Sbjct: 112 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 171

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++ +A   + Q    GFEPD + YN  ++G  Q   +  A +++  M ++G DP+  +
Sbjct: 172 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 231

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++  LC+  ++EEA     +M   GC  D+ T+ TLI+  C   +++   ++   + 
Sbjct: 232 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 291

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G+ P+  T+  ++ A  K  +    + L  EM+  GC PD   YN +I   C LG+L 
Sbjct: 292 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 351

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+++  +ME+      T ++  ++ G   +  + EA E F +M  +G+  +    T   
Sbjct: 352 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SRNAITFNT 409

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L++ L + +K++ A ++ + ++++G + N   +   +      G +K+A      M    
Sbjct: 410 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 469

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
                 T+  L+ GL K    Q+A ++   +R
Sbjct: 470 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 501



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 201/425 (47%), Gaps = 5/425 (1%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T V+  L+        +K    V  EM   G +PD   F  L+ ALC+   V+ A  + +
Sbjct: 54  TVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 113

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EM  R   P    FT+L+ G+ +EG +  A  V  +M + G     V  N L++GY ++G
Sbjct: 114 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 173

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           ++ DA   +++    G +P+  +Y   +  LC+ + +  A +    M + G + DV TY 
Sbjct: 174 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 233

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +++  CK+ +++    IL+ M+ RG LP+  T+  ++ A      LEE ++L  ++   
Sbjct: 234 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 293

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PDV  +N++I   CK+G+   A+ ++ EM+ +  +P   ++  ++      G L +A
Sbjct: 294 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 353

Query: 473 CEYFKEMVGRGLLSAPQYG-TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
            +  K+M   G    P+   T   +++ L +  ++E A++V+  +  +G   N   +   
Sbjct: 354 LDLLKDMESTG---CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 410

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           I  L  +  + +A      M+   + P   T+  ++    K  + + AA+I E +     
Sbjct: 411 IDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 470

Query: 592 ERQIT 596
           E  + 
Sbjct: 471 EVDVV 475



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 155/362 (42%), Gaps = 38/362 (10%)

Query: 273 GFEPDIVVYNNLL-------------SGYAQMG----------------------KMTDA 297
           G + D VVYN+LL             S Y++MG                      ++  A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
             +L+EM  +G  P+  ++T L+Q       +E A R    M   GC A  VT   LI+G
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK  +++     +   I  G  P+Q+TY   +    + + +   +++M  M + G  PD
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 228

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN+V+   CK G+L+EA  + N+M      P   +F  ++        L EA +  +
Sbjct: 229 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 288

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           ++  +G+  +P   T   L+N+L +     +A  ++  +   GC  +   +   I +L S
Sbjct: 289 QVTVKGV--SPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 346

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-IT 596
            G + +A     DM          T+  ++ GL K    + A E+ +++      R  IT
Sbjct: 347 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 406

Query: 597 FK 598
           F 
Sbjct: 407 FN 408


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 223/471 (47%), Gaps = 23/471 (4%)

Query: 80  ILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYD 139
           +L+  H R           G  L  G    V+    D G +     +     P++    D
Sbjct: 168 VLRDLHGR-----------GCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPD 216

Query: 140 V--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIE 195
           V  Y A+++ L   R++G V  LMEEM      P ++T   F  L+       + ++  E
Sbjct: 217 VVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVT---FSTLIGHLCRNGLFERVHE 273

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWC 254
           V  +M ++GC PD  ++  ++D +CK   ++ A  + + M      P++  + +LL G C
Sbjct: 274 VHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLC 333

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              +  EA+ +L +M D     D V +N L+    Q G +    E+L++M   GC P+  
Sbjct: 334 SADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVI 393

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT +I   C+   ++EA      M   GC  + V+YT ++ G C + +     E++  M
Sbjct: 394 TYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQM 453

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           IQ+G  PN +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G  
Sbjct: 454 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNT 513

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTL 493
            EA+ + N M    +SP T  +  +     G+G + +  + F+ +    + S A  Y   
Sbjct: 514 DEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLY--- 570

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            A+++SL +  + + A +  + +V+ GC  N   +TI I  L S G VKEA
Sbjct: 571 NAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEA 621



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 200/426 (46%), Gaps = 11/426 (2%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++R    AR      ++++EM   GC P+   F  L+  LC+N   +   ++  +M E  
Sbjct: 223 VLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHG 282

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +R + +++ G CKE +L  A+ +L +M   G  P++V YN LL G     +  +A 
Sbjct: 283 CAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAE 342

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            LL EM  K C  +  ++ +L+  LC+   ++       +M   GC  DV+TYTT+I+GF
Sbjct: 343 GLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGF 402

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   ID    +L SM   G  PN ++Y  ++      E   +  ELM +M + GC P+ 
Sbjct: 403 CKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNP 462

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +N +I   CK G +++A+ +  +M     SP   S+  ++ G    G   EA E    
Sbjct: 463 VTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNV 522

Query: 479 MVGRGLLSAPQ---YGTLKALLNSLLRAQKV-EMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           MV +G+  +P    Y ++ + L+   R  KV +M +++    V      +   +   I S
Sbjct: 523 MVKKGM--SPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRS----DAVLYNAVISS 576

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L   G    A  +   M+ +  +P   T+  L+RGL      + A EI  ++    A R+
Sbjct: 577 LCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGALRK 636

Query: 595 ITFKMY 600
              K +
Sbjct: 637 HLMKHF 642



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 186/408 (45%), Gaps = 4/408 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L+R   +   +  A+ VLD+M + GC P   ++   L+A C+ S  + A  +  ++ 
Sbjct: 114 YFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLH 173

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKM 294
            R     + +   +L   C +G + EA  +L  +  + G EPD+V YN +L G     + 
Sbjct: 174 GRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRW 233

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
               +L++EM   GC PN  +++ LI  LCR    E  +    +M   GC  DV  Y T+
Sbjct: 234 GHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATI 293

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I G CK  +++    IL+ M   G+ PN + Y  ++      +  EE   L+ EM    C
Sbjct: 294 IDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDC 353

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             D   +N+++   C+ G +   + V  +M      P   ++  +++GF  +G + EA  
Sbjct: 354 PLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVM 413

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             + M   G    P   +   +L  L  A++   A+++ S ++ +GC  N   +   I+ 
Sbjct: 414 LLRSMAACG--CRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINF 471

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           L   G V++A      M+     P   +++ ++ GL K  N   A E+
Sbjct: 472 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALEL 519



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 187/408 (45%), Gaps = 9/408 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++L    +     A++++M  R   P   T  ++ + +     A   + A+ VL 
Sbjct: 114 YFPLVRALCARGRIADALAVLDDMARRGCAP---TPPMYHVTLEAACRASGFRGAVGVLR 170

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKE 256
           ++   GC  D      +L A+C    V EA +L  ++   F  +P +  + ++L G C  
Sbjct: 171 DLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMA 230

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +    + ++ +M  AG  P+IV ++ L+    + G      E+  +M   GC P+   Y
Sbjct: 231 RRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMY 290

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             +I  +C+ E++E A      M   G   +VV Y TL+ G C + + +    +L  M  
Sbjct: 291 ATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFD 350

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +    + +T+  ++    +   ++  +E++ +M + GC+PDV  Y  VI   CK G + E
Sbjct: 351 KDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDE 410

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           AV +   M A    P T S+ +++ G       ++A E   +M+ +G    P   T   L
Sbjct: 411 AVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQG--CPPNPVTFNTL 468

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           +N L +   VE A ++   ++  GC  ++ +++  I  L   G+  EA
Sbjct: 469 INFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEA 516



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 158/320 (49%), Gaps = 6/320 (1%)

Query: 129 SKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFA 185
           ++ P+Y  S +V  Y  L+K L    ++     L+ EM  K+ P  +    F IL+    
Sbjct: 311 NRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCP--LDDVTFNILVDFLC 368

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLR 244
              +V + IEVL++M ++GC PD   +  +++  CK   + EA  L   M     +P+  
Sbjct: 369 QNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTV 428

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +T +L G C   + V+A+ ++ QM   G  P+ V +N L++   + G +  A ELLK+M
Sbjct: 429 SYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 488

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              GC P+  SY+ +I  L +    +EA      M + G   + + Y+++ S      +I
Sbjct: 489 LVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRI 548

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++  ++ +++    +  + + Y  ++ +  K+ E +  +E +  M   GCVP+ S Y ++
Sbjct: 549 NKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTIL 608

Query: 425 IRLACKLGELKEAVNVWNEM 444
           IR     G +KEA  +  E+
Sbjct: 609 IRGLASEGFVKEAQEILTEL 628



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 166/393 (42%), Gaps = 48/393 (12%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+C+ G+L  A+ +   +  A   P+   Y  L+      G++ DA  +L +M 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASVPVA---PNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 306 RKGCDPNANSYTV-----------------------------------LIQALCRMEKME 330
           R+GC P    Y V                                   ++QA+C    ++
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVD 198

Query: 331 EANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           EA R   ++  S GCE DVV+Y  ++ G C +R+     ++++ M+  G  PN +T+   
Sbjct: 199 EAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTF-ST 257

Query: 390 MLAHEKKEELEECV-ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++ H  +  L E V E+  +M + GC PDV  Y  +I   CK   L+ A  + N M +  
Sbjct: 258 LIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYG 317

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVE 507
           LSP    +  ++ G        EA     EM  +     P    T   L++ L +   V+
Sbjct: 318 LSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDK---DCPLDDVTFNILVDFLCQNGLVD 374

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
              +V   ++  GC  +V  +T  I+     G + EA      M      P   ++  ++
Sbjct: 375 RVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVL 434

Query: 568 RGLKKLYNRQIAAE--ITEKVRKMAAERQITFK 598
           +GL     R + AE  +++ +++      +TF 
Sbjct: 435 KGLCS-AERWVDAEELMSQMIQQGCPPNPVTFN 466


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 229/498 (45%), Gaps = 40/498 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+  L ++++F     +M+EM  E   + +      L+        ++ A E+L+++
Sbjct: 298 YCTLVLGLCRIQEFEVGMEMMDEM-IELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKV 356

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW------ 253
            K G  P+ FV+  ++++LCK   ++EA  LF  M ER   P+   +T L+ G+      
Sbjct: 357 GKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKL 416

Query: 254 -----------------------------CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
                                        CK GK+  A+ +  +M D G +P +  Y +L
Sbjct: 417 DVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSL 476

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +SGY + G +  AF+L  EM  KG  PN  ++T LI  LC++ KM EA++ F EM     
Sbjct: 477 ISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKI 536

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             + VTY  LI G C+     R +E+LD MI++G+ P+  TY  ++        + E  E
Sbjct: 537 LPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKE 596

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
            + ++       D   Y  +++  CK G +KEA+    EM    L     S+ V++ G L
Sbjct: 597 FINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGAL 656

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            Q   I   E  +EM G+G+   P       L++  +++  ++ A + W  ++ +G   N
Sbjct: 657 NQNDRI-LFELLREMHGKGM--QPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPN 713

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
              +T  ++ LF  G+V EA      M+  + +P   T+   +  L K  N + A ++  
Sbjct: 714 SVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHN 773

Query: 585 KVRKMAAERQITFKMYKR 602
            + + +    +T+ +  R
Sbjct: 774 AMLQGSFANTVTYNILIR 791



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 202/469 (43%), Gaps = 43/469 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I    K  K      L +EM  +  KP   T   +  L+  +    +V KA ++  
Sbjct: 438 YNSMINCQCKFGKMKMAELLFKEMVDKGLKP---TVATYTSLISGYCKDGLVPKAFKLYH 494

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   F  L+  LC+ + + EA+KLFDEM E +  P+   +  L+ G C+EG
Sbjct: 495 EMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREG 554

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +L +M   G  PD   Y  L++G    G++++A E + ++  K    +   YT
Sbjct: 555 NTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYT 614

Query: 318 VLIQALCRMEKMEEA------------------------------NRAFVEMERS----G 343
            L+Q  C+  +++EA                              +R   E+ R     G
Sbjct: 615 ALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKG 674

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + D V YT LI GF KS  + + +E    MI  G +PN +TY  ++    K   + E  
Sbjct: 675 MQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAK 734

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L   M     +P+   Y   +    K G ++ A+ + N M   S +  T ++ +++ G+
Sbjct: 735 LLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFA-NTVTYNILIRGY 793

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G   EA +    M+G G++  P   T    +    +   V+ A D+W C++ +G + 
Sbjct: 794 CQIGKFQEAAKLLDVMIGIGMV--PDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKP 851

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +   +   IH+   NG +  A     DMM   + P   T+  LM  L +
Sbjct: 852 DRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQ 900



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/545 (23%), Positives = 246/545 (45%), Gaps = 78/545 (14%)

Query: 50  TKEDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVV--LRPGLT 107
           T+  + + +N  D+H     F + +E+I R  + +       ++A  +S +   + P   
Sbjct: 25  TRRRNLELDNENDSH-----FVYVLEQIVRGNQSW-------KIAFNNSSISGNIEPHHV 72

Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA-------- 159
           E+V+ R  D   L  R++ +     N+ HS   +  LI SL +   F    +        
Sbjct: 73  EKVLIRTLDDSRLALRFFNFLGLHRNFHHSTASFCILIHSLLQNNLFWPASSLLQTLLLR 132

Query: 160 ----------LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
                       E  +K K    ++  F +L++ +   + V   + V++ M  YG  P+ 
Sbjct: 133 GLNPHQIFENFFESYKKYK--FSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEV 190

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
                LL+AL +    ++  +LFD                                   +
Sbjct: 191 RTLSALLNALARIRKFRQVLELFD----------------------------------TL 216

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
            +AG +PD  +Y  ++    ++     A E++ +    GC  +  +Y V I  LC+ +++
Sbjct: 217 VNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRV 276

Query: 330 EEANRAFVEMERS----GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
            EA    VE++RS    G +AD+VTY TL+ G C+ ++ +   E++D MI+ G +P++  
Sbjct: 277 WEA----VEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAA 332

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
              ++    K   +E   EL+ ++ K+G VP++  YN +I   CK G+L+EA  +++ M 
Sbjct: 333 VSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMA 392

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
              L+P   ++ +++ GF  +  L  A  YF +M+  G +SA  Y +  +++N   +  K
Sbjct: 393 ERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECG-ISATVY-SYNSMINCQCKFGK 450

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++MA+ ++  +V KG +  V  +T  I     +G V +A     +M    + P   TF  
Sbjct: 451 MKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTA 510

Query: 566 LMRGL 570
           L+ GL
Sbjct: 511 LICGL 515



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 181/416 (43%), Gaps = 49/416 (11%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMV 190
           PN V     + ALI  L ++ K      L +EM + K  ++  EV + +L+         
Sbjct: 503 PNTV----TFTALICGLCQINKMAEASKLFDEMVELK--ILPNEVTYNVLIEGHCREGNT 556

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSL 249
            +A E+LDEM K G  PD + +  L+  LC    V EA +  +++  +  +     +T+L
Sbjct: 557 TRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTAL 616

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L G+CKEG++ EA     +M   G + D+V Y  L+SG          FELL+EM  KG 
Sbjct: 617 LQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRI-LFELLREMHGKGM 675

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+   YT+LI    +   +++A   +  M   G   + VTYT L++G  K+  ++    
Sbjct: 676 QPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKL 735

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKE-------------------------------- 397
           +   M+    +PN +TY    L H  KE                                
Sbjct: 736 LFKRMLVGEAIPNHITY-GCFLDHLTKEGNMENALQLHNAMLQGSFANTVTYNILIRGYC 794

Query: 398 ---ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
              + +E  +L+  M  IG VPD   Y+  I   CK G +  A+++W  M    L P   
Sbjct: 795 QIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRV 854

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
            F  ++H     G L  A +   +M+ RGL   P   T  +L+  L  AQ+  + +
Sbjct: 855 VFNFLIHACCLNGELDRALQLRNDMMLRGL--KPTQSTYHSLMVQL--AQRARLTQ 906



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 120/279 (43%), Gaps = 10/279 (3%)

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           FE   E  +K    +++ + +LIQ   + +++ +       M   G   +V T + L++ 
Sbjct: 140 FENFFESYKKYKFSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNA 199

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
             + RK  +  E+ D+++  G+ P+   Y  ++    + ++  +  E++ +    GC   
Sbjct: 200 LARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLS 259

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----AC 473
           +  YNV I   CK   + EAV V   +    L     ++  +V G     C I+      
Sbjct: 260 IVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGL----CRIQEFEVGM 315

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E   EM+  G +  P    +  L+  L++   +E A ++ + +   G   N++ +   I+
Sbjct: 316 EMMDEMIELGYV--PSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMIN 373

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           SL   G ++EA      M +  + P   T+  L+ G  +
Sbjct: 374 SLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGR 412


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 249/513 (48%), Gaps = 17/513 (3%)

Query: 70  FSHDV----EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRY 124
           ++H +    E+  RILK F    P  E AL+   + +   L   V+    D G ++  ++
Sbjct: 49  YTHSIRVMDERFIRILKIFKWG-PDAEKALEVLMMKVDHWLVREVMKT--DVGVSVKMQF 105

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA+++ NY H    Y ALI+ L  + ++G +W +++EM +    ++T      ++R  
Sbjct: 106 FRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRML 165

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS 242
            +A+M+ KA+ +  ++    C+P    +  ++  L      ++  +L++EM    +  P 
Sbjct: 166 GNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPD 225

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              +++L+  +CK G+   A ++L +MKD G +P   +Y  L++   ++  +  A  L +
Sbjct: 226 TVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFE 285

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EMR + C P+  +YT LI+ L +  +++EA   F EM R GC  D V    +I+   K+ 
Sbjct: 286 EMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAG 345

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNY 421
           ++D   ++ + M     +P+ +TY  I+ A  E K  + E       M+  G  P    Y
Sbjct: 346 RLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTY 405

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMV 480
           +++I   CK    ++A+ +  EM+     P   ++  ++   LG+    + A E F+E+ 
Sbjct: 406 SILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDLANELFQELK 464

Query: 481 GR-GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G  SA  Y     ++  L +A +++ A D++  +   GC  NVYA+   +  L   G
Sbjct: 465 ENCGSSSARVYAV---MIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAG 521

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            + EA +    M D   +P  +++  ++  L K
Sbjct: 522 MLDEALTTMRRMQDHGCIPDINSYNIILNALAK 554



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 164/349 (46%), Gaps = 7/349 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  L+  L K+        L EEMR +  +P + T   +  L+R    A  + +A    
Sbjct: 263 IYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFT---YTELIRGLGKAGRLDEAYNFF 319

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG-WCK 255
            EM + GC PD  +   +++ L K   + +A KLF+EM   R  PS+  + +++   +  
Sbjct: 320 HEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFES 379

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + ++ E      +MK +G  P    Y+ L+ G+ +  +   A  LL+EM  KG  P   +
Sbjct: 380 KSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAA 439

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI AL + ++ + AN  F E++ +   +    Y  +I    K+ ++D   ++ D M 
Sbjct: 440 YCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMN 499

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  PN   Y  +M    +   L+E +  M  M+  GC+PD+++YN+++    K G   
Sbjct: 500 RLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPD 559

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            A+ +   M+ +++ P   S+  ++      G   EA +  KEM   G 
Sbjct: 560 RAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGF 608



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 131/293 (44%), Gaps = 5/293 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           +I  L K  +      L EEM   +  P ++T     I+   F S   V +     + M 
Sbjct: 337 MINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNT--IIKALFESKSRVSEISSWFERMK 394

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
             G  P  F +  L+D  CK +  ++A  L +EM E+ F P    + SL+    K  +  
Sbjct: 395 GSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A  +  ++K+        VY  ++    + G++ DA +L  EM R GC PN  +Y  L+
Sbjct: 455 LANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALM 514

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             L R   ++EA      M+  GC  D+ +Y  +++   K+   DR   +L +M Q  I 
Sbjct: 515 SGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIK 574

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           P+ ++Y  ++ A       EE  +LM EM  IG   D+  Y+ ++    K+ +
Sbjct: 575 PDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGKVDQ 627


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 212/446 (47%), Gaps = 41/446 (9%)

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
            +R +   SK+ N   +   Y  LI  L +  +    + L +EM ++  Q  +T  + +L
Sbjct: 225 AFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ-PSTRTYTVL 283

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERF 239
           ++      M  KA+++LDEM    C P+   +  L+D LC+   ++EA  +F +M +   
Sbjct: 284 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK----------------------------- 270
            P +  F +L+ G+CKEG +V A  +L  M+                             
Sbjct: 344 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 403

Query: 271 ------DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
                 D G  PD V YN L+ G+ + G++  AF +   M   G +P+  ++T LI  LC
Sbjct: 404 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 463

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI-DRCYEILDSMIQRGILPNQ 383
           ++ ++E+AN     M + G   D VT+T LI G CK  K  D C+ + ++M++   L   
Sbjct: 464 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCF-LFENMVENRCLTTA 522

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            T+   + A  K  +L E   ++G+M K G VP V  + ++I   C+ GE   ++ +   
Sbjct: 523 HTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLER 582

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M+ A  SP   ++ ++++G    G + EA      M   G+  +P + T   L+ + ++A
Sbjct: 583 MKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGV--SPNHFTYAVLVKAHVKA 640

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWT 529
            +++ A  + S +V  GC+ N + ++
Sbjct: 641 GRLDRAFQIVSTMVKNGCQPNSHIYS 666



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 225/481 (46%), Gaps = 25/481 (5%)

Query: 109 RVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY----------------RALIKSLSKMR 152
           R++N     G + YR  + A  +  +V + +++                 +L+ +  +  
Sbjct: 161 RMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRD 220

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212
             G  + + E+M KE+     +  + IL+     A  +++A ++  EM + GC+P    +
Sbjct: 221 DLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTY 280

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
             L+ A C      +A K+ DEM  +   P++  +T L+   C+EGK+ EA  V  +M  
Sbjct: 281 TVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLK 340

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  P I+ +N L++GY + G +  AF+LL  M +  C PN  +Y  L++ LCR+ K   
Sbjct: 341 HGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSK--- 397

Query: 332 ANRAFVEMER---SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           + +AF+ + R   +G   D VTY  L+ GFCK  +++  + I +SM   G+ P+  T+  
Sbjct: 398 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTA 457

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    K   LE+   ++G M K G   D   +  +I   CK+G+ K+   ++  M    
Sbjct: 458 LIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENR 517

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
                 +F   +        L EA     +M+  GL+  P   T   L+    RA +  +
Sbjct: 518 CLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLV--PSVVTHTILIEGHCRAGETAL 575

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           +  +   +   GC  NVY +TI I+ L +NG V+EA +    M    V P   T+A L++
Sbjct: 576 SLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVK 635

Query: 569 G 569
            
Sbjct: 636 A 636



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 140/538 (26%), Positives = 236/538 (43%), Gaps = 31/538 (5%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFG----AV 157
           + P L  ++I    +   LG R++ W  +Q +Y +  D    L+  L     FG    AV
Sbjct: 44  MTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKAV 103

Query: 158 WALMEEMRKEKPQLI--------TTEV--------FVILMRRFASARMVKKAIEVLDEMP 201
             L++E    +  ++         TE+        +  L+   A   M   A  V   M 
Sbjct: 104 VLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMV 163

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLF--DEMRERFKPSLRHFTSLLYGWCKEGKL 259
             G       +  +++ALCKN  V +AA++F    +R  F       TSL+   C+   L
Sbjct: 164 NEGFVLGGIDYRTVVNALCKNGFV-QAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 222

Query: 260 VEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
            EA  V  +M K+    P+ V Y+ L+ G  + G++ +AF+L +EM  KGC P+  +YTV
Sbjct: 223 GEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTV 282

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI+A C +   ++A +   EM    C  +V TYT LI   C+  KI+    +   M++ G
Sbjct: 283 LIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 342

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P  +T+  ++  + K+  +    +L+  M K  C P++  YN ++   C++ +  +A 
Sbjct: 343 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 402

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   +    L P   ++ ++V GF  +G L  A   F  M   GL   P   T  AL++
Sbjct: 403 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL--EPDGFTFTALID 460

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +  ++E A  +   +V KG  L+   +T  I      G  K+ C    +M++   + 
Sbjct: 461 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 520

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA-----AERQITFKMYKRRGERDLKEK 611
              TF   +  L K Y    A  +  K+ K           I  + + R GE  L  K
Sbjct: 521 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 578



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 144/327 (44%), Gaps = 6/327 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI    K     + + L+  M K   KP + T   +  LM          KA  +L 
Sbjct: 350 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT---YNELMEGLCRVSKSYKAFLLLR 406

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +   G  PD   +  L+D  CK   +  A  +F+ M     +P    FT+L+ G CK G
Sbjct: 407 RVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLG 466

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  +L  M   G   D V +  L+ G+ ++GK  D   L + M    C   A+++ 
Sbjct: 467 RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 526

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             + AL +  K+ EAN    +M + G    VVT+T LI G C++ +     ++L+ M Q 
Sbjct: 527 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQA 586

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  I+        +EE   ++  M   G  P+   Y V+++   K G L  A
Sbjct: 587 GCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRA 646

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFL 464
             + + M      P +  +  ++ GF+
Sbjct: 647 FQIVSTMVKNGCQPNSHIYSALLSGFV 673



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 168/384 (43%), Gaps = 16/384 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + ALI  L K+ +      ++  M K+   L     F  L+         K    + + M
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEV-TFTALIDGHCKIGKAKDVCFLFENM 513

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
            +  C      F C LDAL K+  + EA A L   M+    PS+   T L+ G C+ G+ 
Sbjct: 514 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGET 573

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             +  +L +MK AG  P++  Y  +++G    G++ +A  +L  M   G  PN  +Y VL
Sbjct: 574 ALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVL 633

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS------RKIDRCYEILDS 373
           ++A  +  +++ A +    M ++GC+ +   Y+ L+SGF  S      R +    ++   
Sbjct: 634 VKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 693

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
            +      N     H+     +  +++  +++  E++K G VP    YN ++   CK G 
Sbjct: 694 SLSSEENDNNCLSSHVF----RLMDVDHALKIRDEIKKCG-VPTEDLYNFLVVGLCKEGR 748

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           + EA  +  +M    L P  D  +  +     + C  + C  F ++V       P + + 
Sbjct: 749 IIEADQLTQDMVKHGLFP--DKAISSIIEHYCKTCKYDNCLEFMKLVLDNKF-VPSFASY 805

Query: 494 KALLNSLLRAQKVEMAKDVWSCIV 517
             +++ L    +V+ A+ + S +V
Sbjct: 806 CWVIHGLRNEGRVQEAQKLVSDLV 829



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V  A+++ DE+ K G  P E ++  L+  LCK   + EA +L  +M +      +  +S+
Sbjct: 715 VDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSI 773

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           +  +CK  K       +  + D  F P    Y  ++ G    G++ +A +L+ ++ R
Sbjct: 774 IEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 830


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM----RKEKPQLITTEVFVILMRRFAS 186
           QPN V     Y  L++ L K+ ++     L+ +M     +  P ++T   +  L+  +  
Sbjct: 42  QPNVVS----YNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVT---YSTLLSGYCK 94

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRH 245
           A  V+++ E+L E+   G  PD  ++  ++ +LCK++ + EA +L +EM R    P+L  
Sbjct: 95  AGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLIT 154

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F +L+ G C+E  L  A  +L +M  +G + D+V YN L+ G  + G++ +A +LL+ M+
Sbjct: 155 FNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK 214

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC P+  +Y+  +  LC+  K+ +A++   +M  S  + +VVTY T++ G CKS KID
Sbjct: 215 ASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKID 274

Query: 366 RCYEILDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
              E+++ M    G   N + Y  ++    K    +E   +M  M + GC PDV  Y+ +
Sbjct: 275 TALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSL 334

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +   CK G+++EAV    EM      P   ++  +VHG    G L EA    +EM   G 
Sbjct: 335 VNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGG 394

Query: 485 LSA---PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
                 P   T  AL+  L +A +++ A   +  + ++GC+ +  +++  +  L  +G  
Sbjct: 395 GGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRA 454

Query: 542 KEA 544
            +A
Sbjct: 455 LQA 457



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 179/354 (50%), Gaps = 8/354 (2%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER---FKPSLRHFTSLLYG 252
           +L+ M     +P+   +  LL+ LCK     EA +L  +M  R     P +  +++LL G
Sbjct: 32  LLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSG 91

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +CK GK+ E++ +L ++   G  PD ++Y  +++   +  ++ +A ELL+EM R GC P 
Sbjct: 92  YCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPT 151

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             ++  LI   CR + +E A+    +M  SG +ADVVTY TL+ G CK+ ++    ++L+
Sbjct: 152 LITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLE 211

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M   G  P+ + Y   +    K  ++ +  +++ +MR     P+V  YN ++   CK G
Sbjct: 212 RMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSG 271

Query: 433 ELKEAVNVWNEMEAASLSPGTD--SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           ++  A+ +  +M A+S   G +   +  +V G    G   EA    + M   G    P  
Sbjct: 272 KIDTALEMMEQM-ASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG--CRPDV 328

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            T  +L+N L +A K+E A +    +  +GC+ N   +   +H L S G + EA
Sbjct: 329 VTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 179/360 (49%), Gaps = 8/360 (2%)

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R    P+   F +L+ G+ K+G+  + + +L  M     +P++V YN LL G  ++ +  
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH 62

Query: 296 DAFELLKEMRRKG--CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +A EL+++M  +G    P+  +Y+ L+   C+  K+EE+     E+   G   D + YT 
Sbjct: 63  EAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +++  CKS ++    E+L+ MI+ G  P  +T+  ++    +++ LE    L+ +M   G
Sbjct: 123 VVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASG 182

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
              DV  YN ++   CK G L+EA  +   M+A+  +P   ++   V+G    G +++A 
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAH 242

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIWI 532
           +  ++M  R     P   T   +L+ L ++ K++ A ++   + +  GC LNV  ++  +
Sbjct: 243 QVLEQM--RDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             L   G  +EA S    M  A   P   T++ L+ GL K    +   E  E VR+MA E
Sbjct: 301 DGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE---EAVEAVREMAME 357



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 10/214 (4%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  ++  L K  K      +ME+M       +    +  ++         +
Sbjct: 255 PNVV----TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQ 310

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLL 250
           +A  V++ M + GC PD   +  L++ LCK   ++EA +   EM  E  KP+   + SL+
Sbjct: 311 EARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGF-----EPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +G C  G+L EA+ ++ +M   G       P +  YN L+ G  + G++ DA +  + MR
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMR 430

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            +GCDP+  SY+ +++ L R  +  +A     E+
Sbjct: 431 SQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 11/173 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++  L K+ +     ++ME M +   +P ++T   +  L+     A  +++A+E + 
Sbjct: 296 YSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVT---YSSLVNGLCKAGKIEEAVEAVR 352

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF------KPSLRHFTSLLYG 252
           EM   GC+P+   +  L+  LC    + EA ++ +EM           PS+  + +L+ G
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGG 412

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
            CK G++ +A     +M+  G +PD V Y+ ++ G A+ G+   A  +L E+R
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 3/183 (1%)

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M + GC P+   +N ++    K G   +   +   M A  + P   S+  ++ G      
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
             EA E  ++M+ RG  S P   T   LL+   +A KVE ++++   ++++G   +   +
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           T  + SL  +  + EA     +M+ A   P   TF  L+ G  +  N ++A  +   ++K
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSL---LQK 177

Query: 589 MAA 591
           MAA
Sbjct: 178 MAA 180


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 45/469 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL+KM+++    +L ++M  +  +   +T     IL+  F     +  +  VL 
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLN---ILINCFCHLGQMAFSFSVLG 69

Query: 199 EMPKYGCEPDEFV-----------------------------------FGCLLDALCKNS 223
           ++ K G +PD                                      +G LL+ LCK  
Sbjct: 70  KILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG 129

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVY 281
             + A KL   + +R  +P++  + +++ G CK+ KLV   Y L    DA G  PD + Y
Sbjct: 130 ETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKD-KLVNEAYDLYSEMDARGIFPDAITY 188

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             L+ G+  +G++  AF LL EM  K  +P    Y +LI ALC+   ++EA      M +
Sbjct: 189 TTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTK 248

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G +  VVTY+TL+ G+C   ++    +I  +M+Q G+ PN  +Y  ++    K + ++E
Sbjct: 249 EGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDE 308

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            + L+ EM     VPD   YN +I   CK G +  A+N+ NEM          ++  ++ 
Sbjct: 309 AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLD 368

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                  L +A   F +M  RG+   P   T  AL++ L +  +++ A++++  ++ KGC
Sbjct: 369 ALCKNQNLDKATALFMKMKERGI--QPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGC 426

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++V+ +T+ I  L   G   EA +    M D   +P   TF  ++R L
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSL 475



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 175/360 (48%), Gaps = 10/360 (2%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFAS 186
           S +PN V    +Y  +I  L K +     + L  EM  R   P  IT   +  L+  F  
Sbjct: 145 STRPNVV----MYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAIT---YTTLIYGFCL 197

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRH 245
              +  A  +LDEM      P  +++  L++ALCK  +VKEA  L   M +E  KP +  
Sbjct: 198 LGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVT 257

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +++L+ G+C  G++  AK +   M   G  P++  YN +++G  +  ++ +A  LL+EM 
Sbjct: 258 YSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREML 317

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            K   P+  +Y  LI  LC+  ++  A     EM   G  ADVVTYT+L+   CK++ +D
Sbjct: 318 HKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLD 377

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +   +   M +RGI P   TY  ++    K   L+   EL   +   GC  DV  Y V+I
Sbjct: 378 KATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMI 437

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK G   EA+ + ++ME     P   +F +++     +    +A +   EM+ +GLL
Sbjct: 438 SGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 497



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 192/394 (48%), Gaps = 3/394 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRER 238
           ++   A  +    AI +  +M   G   +      L++  C    +  +  +  + ++  
Sbjct: 16  ILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLG 75

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           ++P      +L+ G C +G++ ++ +   ++   GF+ D V Y  LL+G  ++G+   A 
Sbjct: 76  YQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAV 135

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +LL+ +  +   PN   Y  +I  LC+ + + EA   + EM+  G   D +TYTTLI GF
Sbjct: 136 KLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGF 195

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C   ++   + +LD MI + I P    Y  ++ A  K+  ++E   L+  M K G  P V
Sbjct: 196 CLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGV 255

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y+ ++   C +GE++ A  +++ M    ++P   S+ +M++G      + EA    +E
Sbjct: 256 VTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLRE 315

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ + ++  P   T  +L++ L ++ ++  A ++ + +  +G   +V  +T  + +L  N
Sbjct: 316 MLHKNMV--PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKN 373

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            ++ +A +  + M +  + P   T+  L+ GL K
Sbjct: 374 QNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 407



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 161/336 (47%), Gaps = 4/336 (1%)

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           R  P +  F  +L    K  + + A  +  QM+  G   + V  N L++ +  +G+M  +
Sbjct: 5   RHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFS 64

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           F +L ++ + G  P+  +   L++ LC   +++++     ++   G + D V+Y TL++G
Sbjct: 65  FSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNG 124

Query: 358 FCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
            CK  +  RC   L  MI+ R   PN + Y  I+    K + + E  +L  EM   G  P
Sbjct: 125 LCKIGE-TRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFP 183

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D   Y  +I   C LG+L  A ++ +EM   +++PG   + ++++    +G + EA    
Sbjct: 184 DAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLL 243

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             M   G+   P   T   L++      +V+ AK ++  +V  G   NVY++ I I+ L 
Sbjct: 244 AVMTKEGI--KPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLC 301

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
               V EA +   +M+  +++P   T+  L+ GL K
Sbjct: 302 KCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCK 337



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 132/320 (41%), Gaps = 37/320 (11%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I+ +N +L   A+M +   A  L K+M  KG   N  +  +LI   C + +M  +   
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D +T  TL+ G C   ++ +     D ++ +G   + ++Y  ++    K
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             E    V+L+  +      P+V  YN +I   CK   + EA ++++EM+A  + P   +
Sbjct: 128 IGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAIT 187

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +++GF   G L+ A     EM+                                   
Sbjct: 188 YTTLIYGFCLLGQLMGAFSLLDEMI----------------------------------- 212

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
              K     VY + I I++L   G+VKEA +    M    + P   T++ LM G   +  
Sbjct: 213 --LKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGE 270

Query: 576 RQIAAEITEKVRKMAAERQI 595
            Q A +I   + +M     +
Sbjct: 271 VQNAKQIFHAMVQMGVNPNV 290


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 9/334 (2%)

Query: 140 VYRALIKSLSKMRKFGAVW---ALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAI 194
            Y  LI    KM K G ++   A+++EMR +   P  +T   F IL+  F   + V  A+
Sbjct: 200 TYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVT---FNILIDGFCKDKNVSAAM 256

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           +V  EM + G +P+   +  L++ LC N  V EA  L D+M     KP++    +LL G+
Sbjct: 257 KVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGF 316

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK   + +A  +   M   G  P++  YN L+  Y +   M DAF L + M  KG  P+ 
Sbjct: 317 CKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDV 376

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++Y  LI  LCR   +E A     EM+    +AD++TY  LI   C   ++ +   +LD 
Sbjct: 377 STYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDE 436

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M ++G+ P+QLTY  ++  + K+  L   + L  +M K+G + +V+ YNV+I+  CK  +
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDK 496

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           L++A  + NEM    L P   ++ ++    + +G
Sbjct: 497 LEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 192/424 (45%), Gaps = 41/424 (9%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
           IL+  +A     +   E       YG +        L+  L K   + +   ++ EM R 
Sbjct: 98  ILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRR 157

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK---M 294
           R +P+L  F  ++ G CK GKL +A  ++  MK  G   +++ YN L+ GY +MGK   M
Sbjct: 158 RIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKM 217

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  +LKEMR  G  PN  ++ +LI   C+ + +  A + F EM R G + +VVTY +L
Sbjct: 218 YKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL 277

Query: 355 I-----------------------------------SGFCKSRKIDRCYEILDSMIQRGI 379
           I                                   +GFCK++ + +  E+ D M ++GI
Sbjct: 278 INGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGI 337

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  TY  ++ A+ K E +E+   L   M   G  PDVS YN +I   C+ G+L+ A N
Sbjct: 338 TPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARN 397

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + +EM+   L     ++ +++     +G + +A     EM  +GL   P   T   +++ 
Sbjct: 398 LVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGL--KPSQLTYNTMIDG 455

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +   +  A ++ S +   G   NV  + + I        +++A     +M++  ++P 
Sbjct: 456 YCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPN 515

Query: 560 PDTF 563
             T+
Sbjct: 516 RMTY 519



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 192/406 (47%), Gaps = 11/406 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           L+  L K+ + G +  + +EM  R+ +P LI+   F I++        + KA +++++M 
Sbjct: 134 LMSGLVKVGEIGDMEFVYKEMIRRRIEPTLIS---FNIVINGLCKVGKLNKAGDIIEDMK 190

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVK---EAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
             G   +   +  L+D  CK   +    +A  +  EMR +   P+   F  L+ G+CK+ 
Sbjct: 191 VRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDK 250

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  V  +M   G +P++V YN+L++G    GK+ +A  L  +M      PN  ++ 
Sbjct: 251 NVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHN 310

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C+ + +++A   F +M + G   +V TY  LI  +CK   ++  + +   M+ +
Sbjct: 311 ALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGK 370

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+  TY  ++    +K +LE    L+ EM       D+  YN++I   C  GE+K+A
Sbjct: 371 GVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKA 430

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + + +EM    L P   ++  M+ G+  +G L  A     +M   G L+     T   L+
Sbjct: 431 LRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLA--NVATYNVLI 488

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               +  K+E A  + + ++ KG   N   + I    +   G V +
Sbjct: 489 KGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPD 534



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 175/355 (49%), Gaps = 5/355 (1%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            K S+     L+ G  K G++ + ++V  +M     EP ++ +N +++G  ++GK+  A 
Sbjct: 124 LKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAG 183

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRM---EKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +++++M+ +G   N  +Y  LI   C+M    KM +A+    EM   G   + VT+  LI
Sbjct: 184 DIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILI 243

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GFCK + +    ++   M ++G+ PN +TY  ++       ++ E   L  +M      
Sbjct: 244 DGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLK 303

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P++  +N ++   CK   +K+A  ++++M    ++P   ++ +++  +     + +A   
Sbjct: 304 PNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFAL 363

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           ++ M+G+G+   P   T   L+  L R   +E A+++ S + TK  + ++  + I I SL
Sbjct: 364 YRIMLGKGV--CPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSL 421

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            + G +K+A     +M    + P   T+  ++ G  K  N + A  +  ++ K+ 
Sbjct: 422 CNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVG 476



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 147/313 (46%), Gaps = 5/313 (1%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           E   +L+ +    F  + ++ + L+  YA+  +    FE  K     G   +  S   L+
Sbjct: 76  EQTQILLSVSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLM 135

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             L ++ ++ +    + EM R   E  ++++  +I+G CK  K+++  +I++ M  RG+ 
Sbjct: 136 SGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVS 195

Query: 381 PNQLTYLHIMLAHEKKEELEECVE---LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            N +TY  ++  + K  ++ +  +   ++ EMR  G  P+   +N++I   CK   +  A
Sbjct: 196 ANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAA 255

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + V+ EM    + P   ++  +++G    G + EA     +MV   L   P   T  ALL
Sbjct: 256 MKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCL--KPNIITHNALL 313

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N   + + V+ A +++  +  +G   NV  + I I +   + ++++A +    M+   V 
Sbjct: 314 NGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVC 373

Query: 558 PQPDTFAKLMRGL 570
           P   T+  L+ GL
Sbjct: 374 PDVSTYNCLIAGL 386


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 176/322 (54%), Gaps = 3/322 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L+  F     V  A+ ++D+M + G +PD   +  ++D+LCK   V +A   F E+ R+ 
Sbjct: 264 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 323

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T+L+ G C   +  +A  +L  M      P+++ Y+ LL  + + GK+ +A 
Sbjct: 324 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 383

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL +EM R   DP+  +Y+ LI  LC  ++++EAN+ F  M   GC ADVV+Y TLI+GF
Sbjct: 384 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 443

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK+++++   ++   M QRG++ N +TY  ++    +  ++++  E   +M   G  PD+
Sbjct: 444 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 503

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN+++   C  GEL++A+ ++ +M+   +     ++  ++ G    G + EA   F  
Sbjct: 504 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 563

Query: 479 MVGRGLLSAPQYGTLKALLNSL 500
           +  +GL   P   T   +++ L
Sbjct: 564 LSLKGL--KPDIVTYTTMMSGL 583



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 205/467 (43%), Gaps = 41/467 (8%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            +  L+ +++KM KF  V +L E+M+    P       + IL+  F     +  A+ VL +
Sbjct: 698  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPH--NHYTYSILINCFCRRSQLPLALAVLGK 755

Query: 200  MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY------- 251
            M K G EP+      LL+  C +  + EA  L D+M    ++P+   F +L++       
Sbjct: 756  MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 815

Query: 252  ----------------------------GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
                                        G CK G    A  +L +M+    EP +++YN 
Sbjct: 816  ASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNT 875

Query: 284  LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
            ++ G  +   M DA  L KEM  KG  PN  +Y+ LI  LC   +  +A+R   +M    
Sbjct: 876  IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 935

Query: 344  CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
               DV T++ LI  F K  K+    ++ D M++R I P+ +TY  ++      + L+E  
Sbjct: 936  INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 995

Query: 404  ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            ++   M    C PDV  YN +I+  CK   ++E + V+ EM    L   T ++ +++ G 
Sbjct: 996  QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 1055

Query: 464  LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
               G    A E FKEMV  G+   P   T   LL+ L +  K+E A  V+  +     E 
Sbjct: 1056 FQAGDCDMAQEIFKEMVSDGV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 1113

Query: 524  NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +Y + I I  +   G V++      ++    V P    +  ++ G 
Sbjct: 1114 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 1160



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 203/428 (47%), Gaps = 8/428 (1%)

Query: 148 LSKMR----KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           LSK R    K      L  +M K +P   +   F  L+      +     I +  +M   
Sbjct: 159 LSKTRLRDIKLNDAIDLFSDMVKSRP-FPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVL 217

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G   D + F  +++  C    V  A  +  +M +  ++P      SL+ G+C+  ++ +A
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             ++ +M + G++PDIV YN ++    +  ++ DAF+  KE+ RKG  PN  +YT L+  
Sbjct: 278 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 337

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC   +  +A R   +M +     +V+TY+ L+  F K+ K+    E+ + M++  I P+
Sbjct: 338 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 397

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++      + ++E  ++   M   GC+ DV +YN +I   CK   +++ + ++ 
Sbjct: 398 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM    L   T ++  ++ GF   G + +A E+F +M   G+  +P   T   LL  L  
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCD 515

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             ++E A  ++  +  +  +L++  +T  I  +   G V+EA S    +    + P   T
Sbjct: 516 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 575

Query: 563 FAKLMRGL 570
           +  +M GL
Sbjct: 576 YTTMMSGL 583



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 191/392 (48%), Gaps = 16/392 (4%)

Query: 131  QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
            QP+ V     Y  ++  L K       + L+ +M + K  P ++   ++  ++      +
Sbjct: 832  QPDLV----TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLCKYK 884

Query: 189  MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             +  A+ +  EM   G  P+   +  L+  LC      +A++L  +M ER   P +  F+
Sbjct: 885  HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 944

Query: 248  SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            +L+  + KEGKLVEA+ +  +M     +P IV Y++L++G+    ++ +A ++ + M  K
Sbjct: 945  ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 1004

Query: 308  GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
             C P+  +Y  LI+  C+ +++EE    F EM + G   + VTY  LI G  ++   D  
Sbjct: 1005 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 1064

Query: 368  YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             EI   M+  G+ PN +TY  ++    K  +LE+ + +   +++    P +  YN++I  
Sbjct: 1065 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 1124

Query: 428  ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             CK G++++  +++  +    + P   ++  M+ GF  +G   EA   FKEM   G L  
Sbjct: 1125 MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL-- 1182

Query: 488  PQYGTLKALLNSLL----RAQKVEMAKDVWSC 515
            P  G    L+ + L    R    E+ K++ SC
Sbjct: 1183 PNSGCYNTLIRARLRDGDREASAELIKEMRSC 1214



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 189/404 (46%), Gaps = 3/404 (0%)

Query: 180  LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
            L R   S   +  A+ +  EM K    P    F  LL A+ K +       L ++M+   
Sbjct: 666  LSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG 725

Query: 240  KPSLRHFTSLLYG-WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P   +  S+L   +C+  +L  A  VL +M   G+EP+IV  ++LL+GY    ++++A 
Sbjct: 726  IPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV 785

Query: 299  ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
             L+ +M   G  PN  ++  LI  L    K  EA      M   GC+ D+VTY  +++G 
Sbjct: 786  ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGL 845

Query: 359  CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            CK    D  + +L+ M Q  + P  L Y  I+    K + +++ + L  EM   G  P+V
Sbjct: 846  CKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 905

Query: 419  SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
              Y+ +I   C  G   +A  + ++M    ++P   +F  ++  F+ +G L+EA + + E
Sbjct: 906  VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 965

Query: 479  MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
            MV R +   P   T  +L+N      +++ AK ++  +V+K C  +V  +   I      
Sbjct: 966  MVKRSI--DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKY 1023

Query: 539  GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
              V+E      +M    ++    T+  L++GL +  +  +A EI
Sbjct: 1024 KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 1067



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 216/486 (44%), Gaps = 39/486 (8%)

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KP 169
           NR  DA +L  +      K P+ V     Y A+I SL K ++    +   +E+ ++  +P
Sbjct: 272 NRVSDAVSLVDKMVEIGYK-PDIV----AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRP 326

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            ++T   +  L+    ++     A  +L +M K    P+   +  LLDA  KN  V EA 
Sbjct: 327 NVVT---YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 383

Query: 230 KLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +LF+EM R    P +  ++SL+ G C   ++ EA  +   M   G   D+V YN L++G+
Sbjct: 384 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 443

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +  ++ D  +L +EM ++G   N  +Y  LIQ   +   +++A   F +M+  G   D+
Sbjct: 444 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 503

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY  L+ G C + ++++   I + M +R +  + +TY  ++    K  ++EE   L   
Sbjct: 504 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 563

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           +   G  PD+  Y  ++   C  G L E   ++ +M+   L     +        L  G 
Sbjct: 564 LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT--------LSDGD 615

Query: 469 LIEACEYFKEMVGRG----LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           +  + E  K+M+  G    LL   + G  K  L SLLRA   + + D    +   G    
Sbjct: 616 ITLSAELIKKMLSCGYAPSLLKDIKSGVCKKAL-SLLRAFSGKTSYDYREKLSRNG---- 670

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
                       S   + +A +   +M+ +   P    F+KL+  + K+    +   + E
Sbjct: 671 -----------LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGE 719

Query: 585 KVRKMA 590
           +++ + 
Sbjct: 720 QMQNLG 725



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            +Y  +I  L K +       L +EM  +  +P ++T    +  +  +        A  +L
Sbjct: 872  IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW---SDASRLL 928

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
             +M +    PD F F  L+DA  K   + EA KL+DEM +R   PS+  ++SL+ G+C  
Sbjct: 929  SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 988

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-------- 308
             +L EAK +   M      PD+V YN L+ G+ +  ++ +  E+ +EM ++G        
Sbjct: 989  DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 1048

Query: 309  ------------CD---------------PNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                        CD               PN  +Y  L+  LC+  K+E+A   F  ++R
Sbjct: 1049 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 1108

Query: 342  SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            S  E  + TY  +I G CK+ K++  +++  ++  +G+ P+ + Y  ++    +K   EE
Sbjct: 1109 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 1168

Query: 402  CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
               L  EM++ G +P+   YN +IR   + G+ + +  +  EM +   + G  S + +V 
Sbjct: 1169 ADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA-GDASTIGLVT 1227

Query: 462  GFLGQG 467
              L  G
Sbjct: 1228 NMLHDG 1233



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 114/512 (22%), Positives = 212/512 (41%), Gaps = 64/512 (12%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN +     Y AL+ +  K  K      L EEM +    P ++T   +  L+        
Sbjct: 361 PNVI----TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT---YSSLINGLCLHDR 413

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +A ++ D M   GC  D   +  L++  CK   V++  KLF EM +R    +   + +
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+ + G + +A+    QM   G  PDI  YN LL G    G++  A  + ++M+++ 
Sbjct: 474 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            D +  +YT +I+ +C+  K+EEA   F  +   G + D+VTYTT++SG C    +    
Sbjct: 534 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVE 593

Query: 369 EILDSMIQRGILPNQLTY------------------------------------LHIMLA 392
            +   M Q G++ N  T                                     L ++ A
Sbjct: 594 ALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRA 653

Query: 393 HEKKE----------------ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
              K                 +L++ V L GEM K    P +  ++ ++    K+ +   
Sbjct: 654 FSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDV 713

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
            +++  +M+   +     ++ ++++ F  +  L  A     +M+  G    P   TL +L
Sbjct: 714 VISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY--EPNIVTLSSL 771

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           LN    ++++  A  +   +   G + N   +   IH LF +    EA +    M+    
Sbjct: 772 LNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGC 831

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            P   T+  ++ GL K  +  +A  +  K+ +
Sbjct: 832 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 863


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 214/439 (48%), Gaps = 8/439 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           +K+ +E++D M + G E D + +  L+  LCK   + EA ++   M  R  +P+   + +
Sbjct: 318 IKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNT 377

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   CKE  +  A  +   +   G  PD+  +N+L+ G         A EL +EM+ KG
Sbjct: 378 LIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKG 437

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           CDP+  +Y++LI++LC   +++EA     EME SGC  +VV Y TLI G CK+ ++    
Sbjct: 438 CDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAE 497

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +I D M   G+  + +TY  ++    K + +EE  +LM +M   G  PD   Y  +++  
Sbjct: 498 DIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYF 557

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+ G++K A ++   M      P   ++  ++ G    G +  A +  + +  +G++  P
Sbjct: 558 CQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTP 617

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS-NGHVKEACSY 547
           Q      ++ +L + ++ + A  ++  ++ KG   +V  + I    L +  G ++EA  +
Sbjct: 618 Q--AYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDF 675

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNR----QIAAEITEKVRKMAAERQITFKMYKRR 603
            ++M++  ++P+  +F  L  GL  L       Q+   + EK R   +E  I     K +
Sbjct: 676 TVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSETSIIRGFLKIQ 735

Query: 604 GERDLKEKAKKQVDGRKRR 622
              D        +D +K R
Sbjct: 736 KFNDALANLGAILDRKKPR 754



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 225/480 (46%), Gaps = 12/480 (2%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRR 183
           M A   P  V ++++   LI++L K  +      ++E+M     +P     + F  LM+ 
Sbjct: 190 MVADAVPPDVSTFNI---LIRALCKAHQLRPAILMLEDMPNYGLRPD---EKTFTTLMQG 243

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
           F     V+ A+ + + M + GCE        L++ LCK   ++EA +   E  E F P  
Sbjct: 244 FIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE-EEGFCPDQ 302

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F +L+ G C+ G + +   ++  M + GFE D+  YN+L+SG  ++G++ +A E+L  
Sbjct: 303 VTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHH 362

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M  + C+PN  +Y  LI  LC+   +E A      +   G   DV T+ +LI G C +  
Sbjct: 363 MVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSN 422

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            +   E+ + M ++G  P++ TY  ++ +   +  L+E + L+ EM   GC  +V  YN 
Sbjct: 423 REIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNT 482

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   CK   + +A +++++ME   +S  + ++  +++G      + EA +   +M+  G
Sbjct: 483 LIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG 542

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           L   P   T   +L    +   ++ A D+   +   GCE ++  +   I  L   G V  
Sbjct: 543 L--KPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDV 600

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL-KKLYNRQIAAEITEKVRKMAAERQITFKMYKR 602
           A      +    ++  P  +  +++ L K+   ++      E + K      IT+K+  R
Sbjct: 601 ASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFR 660



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/536 (24%), Positives = 230/536 (42%), Gaps = 78/536 (14%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ------LITTE--- 175
           + WAS QPNY     V+  L++ L++   F ++  L+ +M   K        LI  E   
Sbjct: 79  FQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETYA 138

Query: 176 -----------VFVILMRRFA---SARMVKKAIEVL-------------DEMPKYGCEPD 208
                      +F+++ R FA     R    A+ +L              +M      PD
Sbjct: 139 TSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPD 198

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW-------------- 253
              F  L+ ALCK   ++ A  + ++M     +P  + FT+L+ G+              
Sbjct: 199 VSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKE 258

Query: 254 ---------------------CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
                                CKEG++ EA   + +  + GF PD V +N L++G  + G
Sbjct: 259 LMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTG 316

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
            +    E++  M  KG + +  +Y  LI  LC++ +++EA      M    CE + VTY 
Sbjct: 317 HIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYN 376

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           TLI   CK   ++   E+   +  +G+LP+  T+  ++         E  +EL  EM++ 
Sbjct: 377 TLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEK 436

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           GC PD   Y+++I   C    LKEA+ +  EME +  +     +  ++ G      + +A
Sbjct: 437 GCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDA 496

Query: 473 CEYFKEMVGRGLL-SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
            + F +M   G+  S+  Y T   L+N L ++++VE A  +   ++ +G + + + +T  
Sbjct: 497 EDIFDQMEMLGVSRSSVTYNT---LINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTM 553

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +      G +K A     +M      P   T+  L+ GL K     +A+++   V+
Sbjct: 554 LKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQ 609


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 212/446 (47%), Gaps = 41/446 (9%)

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
            +R +   SK+ N   +   Y  LI  L +  +    + L +EM ++  Q  +T  + +L
Sbjct: 248 AFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ-PSTRTYTVL 306

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERF 239
           ++      M  KA+++LDEM    C P+   +  L+D LC+   ++EA  +F +M +   
Sbjct: 307 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK----------------------------- 270
            P +  F +L+ G+CKEG +V A  +L  M+                             
Sbjct: 367 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 426

Query: 271 ------DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
                 D G  PD V YN L+ G+ + G++  AF +   M   G +P+  ++T LI  LC
Sbjct: 427 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 486

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI-DRCYEILDSMIQRGILPNQ 383
           ++ ++E+AN     M + G   D VT+T LI G CK  K  D C+ + ++M++   L   
Sbjct: 487 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCF-LFENMVENRCLTTA 545

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            T+   + A  K  +L E   ++G+M K G VP V  + ++I   C+ GE   ++ +   
Sbjct: 546 HTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLER 605

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M+ A  SP   ++ ++++G    G + EA      M   G+  +P + T   L+ + ++A
Sbjct: 606 MKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGV--SPNHFTYAVLVKAHVKA 663

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWT 529
            +++ A  + S +V  GC+ N + ++
Sbjct: 664 GRLDRAFQIVSTMVKNGCQPNSHIYS 689



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/538 (26%), Positives = 236/538 (43%), Gaps = 31/538 (5%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFG----AV 157
           + P L  ++I    +   LG R++ W  +Q +Y +  D    L+  L     FG    AV
Sbjct: 67  MTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKAV 126

Query: 158 WALMEEMRKEKPQLI--------TTEV--------FVILMRRFASARMVKKAIEVLDEMP 201
             L++E    +  ++         TE+        +  L+   A   M   A  V   M 
Sbjct: 127 VLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMV 186

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLF--DEMRERFKPSLRHFTSLLYGWCKEGKL 259
             G       +  +++ALCKN  V +AA++F    +R  F       TSL+   C+   L
Sbjct: 187 NEGFVLGGIDYRTVVNALCKNGFV-QAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 245

Query: 260 VEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
            EA  V  +M K+    P+ V Y+ L+ G  + G++ +AF+L +EM  KGC P+  +YTV
Sbjct: 246 GEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTV 305

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI+A C +   ++A +   EM    C  +V TYT LI   C+  KI+    +   M++ G
Sbjct: 306 LIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 365

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P  +T+  ++  + K+  +    +L+  M K  C P++  YN ++   C++ +  +A 
Sbjct: 366 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 425

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   +    L P   ++ ++V GF  +G L  A   F  M   GL   P   T  AL++
Sbjct: 426 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL--EPDGFTFTALID 483

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +  ++E A  +   +V KG  L+   +T  I      G  K+ C    +M++   + 
Sbjct: 484 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 543

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA-----AERQITFKMYKRRGERDLKEK 611
              TF   +  L K Y    A  +  K+ K           I  + + R GE  L  K
Sbjct: 544 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 601



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 200/480 (41%), Gaps = 32/480 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI    K     + + L+  M K   KP + T   +  LM          KA  +L 
Sbjct: 373 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT---YNELMEGLCRVSKSYKAFLLLR 429

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +   G  PD   +  L+D  CK   +  A  +F+ M     +P    FT+L+ G CK G
Sbjct: 430 RVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLG 489

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  +L  M   G   D V +  L+ G+ ++GK  D   L + M    C   A+++ 
Sbjct: 490 RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 549

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             + AL +  K+ EAN    +M + G    VVT+T LI G C++ +     ++L+ M Q 
Sbjct: 550 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQA 609

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  I+        +EE   ++  M   G  P+   Y V+++   K G L  A
Sbjct: 610 GCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRA 669

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + + M      P +  +  ++ GF+     I A    + +   G L A    + +   
Sbjct: 670 FQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGA----RALSSTGDLDARSLSSEENDN 725

Query: 498 NSLLRAQK--VEMAKDVWSCIVTKGC------ELNVYAWTIWIHSLFSNG-------HVK 542
           N L    K      +D+++ +V   C      E +     +  H LF +        H  
Sbjct: 726 NCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYC 785

Query: 543 EACSY--CLDMM----DADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQI 595
           + C Y  CL+ M    D   +P   ++  ++ GL+     Q A + +++ VR    E ++
Sbjct: 786 KTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEV 845


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 174/328 (53%), Gaps = 3/328 (0%)

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           A CK S  K+A KL DEMR++   P +  +  ++ G C+EG++ +A   L  +   G EP
Sbjct: 1   ATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 60

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + V YN +L G     +  DA EL+ EM +KGC PN  ++ +LI  LCR   +E A    
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            ++ + GC  + ++Y  L+  FCK +K+D+    LD M+ RG  P+ ++Y  ++ A  + 
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 180

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            E++  VEL+ +++  GC P + +YN VI    K G+ KEA+ + NEM +  L P   ++
Sbjct: 181 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 240

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +  G   +  + +A   F ++   G+   P      A++  L + ++   A D+++ +
Sbjct: 241 STIAAGLCREDRIEDAIRAFGKVQDMGI--RPNTVLYNAIILGLCKRRETHSAIDLFAYM 298

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           +  GC  N   +TI I  L   G +KEA
Sbjct: 299 IGNGCMPNESTYTILIEGLAYEGLIKEA 326



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 157/317 (49%), Gaps = 2/317 (0%)

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK     +A  +L +M+D G  PDIV YN +++G  Q G++ DA E LK +   GC+PN 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            SY ++++ LC  E+ E+A     EM + GC  +VVT+  LIS  C+   ++   E+L+ 
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           + + G  PN L+Y  ++ A  K++++++ +  +  M   GC PD+ +YN ++   C+ GE
Sbjct: 123 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGE 182

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  AV + ++++    +P   S+  ++ G    G   EA E   EMV +GL   P   T 
Sbjct: 183 VDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL--QPDIITY 240

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             +   L R  ++E A   +  +   G   N   +   I  L        A      M+ 
Sbjct: 241 STIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 300

Query: 554 ADVMPQPDTFAKLMRGL 570
              MP   T+  L+ GL
Sbjct: 301 NGCMPNESTYTILIEGL 317



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 166/329 (50%), Gaps = 6/329 (1%)

Query: 160 LMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           L++EMR +   P ++T  V V           V  AIE L  +P YGCEP+   +  +L 
Sbjct: 14  LLDEMRDKGCTPDIVTYNVVV---NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLK 70

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
            LC     ++A +L  EM ++   P++  F  L+   C++G +  A  VL Q+   G  P
Sbjct: 71  GLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTP 130

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + + YN LL  + +  KM  A   L  M  +GC P+  SY  L+ ALCR  +++ A    
Sbjct: 131 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 190

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +++  GC   +++Y T+I G  K+ K     E+L+ M+ +G+ P+ +TY  I     ++
Sbjct: 191 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 250

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
           + +E+ +   G+++ +G  P+   YN +I   CK  E   A++++  M      P   ++
Sbjct: 251 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 310

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            +++ G   +G + EA +   E+  RG++
Sbjct: 311 TILIEGLAYEGLIKEARDLLDELCSRGVV 339



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 124/249 (49%), Gaps = 2/249 (0%)

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           A C+    ++A +   EM   GC  D+VTY  +++G C+  ++D   E L ++   G  P
Sbjct: 1   ATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 60

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N ++Y  ++      E  E+  ELMGEM + GC P+V  +N++I   C+ G ++ A+ V 
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            ++     +P + S+  ++H F  Q  + +A  +   MV RG    P   +   LL +L 
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALC 178

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           R+ +V++A ++   +  KGC   + ++   I  L   G  KEA     +M+   + P   
Sbjct: 179 RSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDII 238

Query: 562 TFAKLMRGL 570
           T++ +  GL
Sbjct: 239 TYSTIAAGL 247



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 45/292 (15%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y  ++K L    ++     LM EM ++   P ++T   F +L+       
Sbjct: 59  EPNTVS----YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT---FNMLISFLCRKG 111

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVF--------------------------GC-------- 214
           +V+ A+EVL+++PKYGC P+   +                          GC        
Sbjct: 112 LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 171

Query: 215 -LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
            LL ALC++  V  A +L  +++++   P L  + +++ G  K GK  EA  +L +M   
Sbjct: 172 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 231

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G +PDI+ Y+ + +G  +  ++ DA     +++  G  PN   Y  +I  LC+  +   A
Sbjct: 232 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 291

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
              F  M  +GC  +  TYT LI G      I    ++LD +  RG++   L
Sbjct: 292 IDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSL 343


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 132/529 (24%), Positives = 243/529 (45%), Gaps = 27/529 (5%)

Query: 66  SHNEFSH-DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRY 124
           ++N F + D+  + +I+++     PK+ +    +   L P    +++    +   L  ++
Sbjct: 93  ANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSA---LAPIWVSKILLGLREDPKLALKF 149

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE------MRKEKP------QLI 172
           + WA  Q  + H+ + Y  ++  + + R +      ++E      M    P       L 
Sbjct: 150 FKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLW 209

Query: 173 TTE--------VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           +T         VF +L   F    ++++A E    M  +   P       LL  L K+ +
Sbjct: 210 STRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGN 269

Query: 225 VKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
            +   K F++M      PS+  +  ++   CKEG L  ++ + VQM++ G  PD+V YN+
Sbjct: 270 GQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNS 329

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ GY ++G + +   L  EM+  GC P+  +Y  LI   C+ EKM  A   F EM+ +G
Sbjct: 330 LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNG 389

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + +VVTY+TLI  FCK   +    ++   M + G+LPN+ TY  ++ A+ K   L E  
Sbjct: 390 LKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAW 449

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +L+ +M + G   ++  Y  ++   CK G + EA  V+  M    +SP    +  +VHG+
Sbjct: 450 KLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY 509

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           +    + +A +  K+M    +   P      +++      +K+E  K +   + ++G   
Sbjct: 510 IKAERMEDAMKILKQMTECNI--KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 567

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           N    T  I + F  G   +A ++  +M D  V     T+  L+ GL K
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCK 616



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 212/453 (46%), Gaps = 8/453 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K+     V +L  EM+     P +IT   +  L+  +     + +A E   
Sbjct: 327 YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIIT---YNGLINCYCKFEKMPRAFEYFS 383

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G +P+   +  L+DA CK   ++ A KLF +MR     P+   +TSL+   CK G
Sbjct: 384 EMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAG 443

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA  +L  M  AG + +IV Y  LL G  + G+M +A E+ + M + G  PN   YT
Sbjct: 444 NLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYT 503

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+    + E+ME+A +   +M     + D++ Y ++I G C  RK++    IL+ M  R
Sbjct: 504 ALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSR 563

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N +    I+ A+ K  +  + +    EM+ +G    +  Y V+I   CK G ++ A
Sbjct: 564 GISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELA 623

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           V+ +  M +  L P    +  ++ G     C+  A + F EM  RG+   P      AL+
Sbjct: 624 VDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM--TPDITAFTALI 681

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  L+   ++ A  + S +     E +++ +T  +      G + +A  +  +M++  ++
Sbjct: 682 DGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGIL 741

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           P+      L+R   K      A E+  ++ +M 
Sbjct: 742 PEEVLCICLLREYYKRGQLDEAIELKNEMERMG 774



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 167/347 (48%), Gaps = 2/347 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +  K       W L+ +M +   +L       +L     + RM++ A EV   M
Sbjct: 432 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIE-AEEVFRSM 490

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            K G  P++ V+  L+    K   +++A K+  +M E   KP L  + S+++G C + KL
Sbjct: 491 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKL 550

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            E K +L +MK  G   + V+   ++  Y + GK +DA    +EM+  G +    +Y VL
Sbjct: 551 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 610

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+   +E A   F  M   G + +V  YT+LI G CK+  I+   ++ D M  RG+
Sbjct: 611 IDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM 670

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+   +  ++  + K   L+E + L+  M ++    D+  Y  ++    + GEL +A  
Sbjct: 671 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARK 730

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
            +NEM    + P     + ++  +  +G L EA E   EM   GL++
Sbjct: 731 FFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLIT 777



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 119/283 (42%), Gaps = 45/283 (15%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE----KPQLITTEVFVILMRRFASARMVKKAIE 195
           +Y ++I      RK      ++EEM+       P + TT     ++  +  A     A+ 
Sbjct: 536 LYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT-----IIDAYFKAGKSSDALN 590

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
              EM   G E     +  L+D LCK   V+ A   F  M     +P++  +TSL+ G C
Sbjct: 591 FFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLC 650

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K   +  AK +  +M+  G  PDI  +  L+ G  + G + +A  L+  M     + + +
Sbjct: 651 KNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLH 710

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            YT L+    +  ++ +A + F E                                   M
Sbjct: 711 VYTSLVSGFSQCGELHQARKFFNE-----------------------------------M 735

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           I++GILP ++  + ++  + K+ +L+E +EL  EM ++G + +
Sbjct: 736 IEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITE 778


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 204/407 (50%), Gaps = 8/407 (1%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           + + L   L  +++ R  D        + WA     + H+ D+Y  LI +L K ++   +
Sbjct: 67  NSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKM 126

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
             ++EEM++ +  L+T +     MRRFA A   + A+ + D++  YG E +      LLD
Sbjct: 127 RGMLEEMKEAR--LVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLD 184

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   V++A +++ E++    P+   F   ++GWCK  K+ EA + L +MK  G  P 
Sbjct: 185 TLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPC 244

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y+ ++  Y         +ELL EM  +GC  N  +YT ++ +L + E+ EEA +   
Sbjct: 245 VISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAE 304

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKK 396
            M+ +G E D + Y  LI    ++ K+     + +  M  + +LPN  TY  ++  + ++
Sbjct: 305 RMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRR 364

Query: 397 EELEECVELMGEMRKI-GCVPDVSNYNVVIRLACKLGELK-EAVNVWNEM-EAASLSPGT 453
              E+ ++L+ EM+K   C PDV  Y  +++   + G+   +  N+ +EM     LS   
Sbjct: 365 AREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKHHLSLDI 424

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            ++ +++HG         A + F++M+ + +   P+Y T + LL+  
Sbjct: 425 STYSLLIHGLCRANKCDWAYQLFEKMISQDI--KPRYLTCQLLLDEF 469



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/425 (20%), Positives = 170/425 (40%), Gaps = 64/425 (15%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP L+   V   L+RR    +  K  I+ +    + G   DE     L D +C  +S++ 
Sbjct: 15  KPTLLPA-VADNLLRRLIDRKKKKSDIDFIIAKVQVGSSEDEVFQSLLQDPVC--NSIQL 71

Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE--PDIV-VYNNL 284
           +  L  ++ +RFK   +    + + W +                +GF+  PD+  +  + 
Sbjct: 72  SHDLVYKLLQRFKDDWKSALGV-FRWAESL--------------SGFKHTPDLYDILIDT 116

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           L    Q+ KM    E +KE R    D  A +    ++      + E A R F ++E  G 
Sbjct: 117 LGKTKQLVKMRGMLEEMKEARLVTLDTVAKA----MRRFAGAGQWENAVRIFDDLETYGL 172

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           E +  +   L+   CK +K+++  ++   + +  I PN  T+   +    K  +++E   
Sbjct: 173 EKNTESMNVLLDTLCKEKKVEKARQMYLEL-KSHIAPNANTFNMFIHGWCKVNKIDEAHW 231

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
            + EM+  G  P V +Y+ +I   C      +   + +EM+A                  
Sbjct: 232 TLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDA------------------ 273

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            QGC      Y                    ++ SL ++++ E A  +   + + G E +
Sbjct: 274 -QGCPANVITY------------------TTIMCSLTKSEEFEEALQIAERMKSAGYEPD 314

Query: 525 VYAWTIWIHSLFSNGHVKEACS-YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
              +   IH+L   G V+EA   + ++M    V+P   T+  ++    +    + A ++ 
Sbjct: 315 TLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLL 374

Query: 584 EKVRK 588
           E+++K
Sbjct: 375 EEMQK 379


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 215/457 (47%), Gaps = 9/457 (1%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEV 176
           +L +  Y    +    V+ Y +   +I +L K +K     + + +M ++   P ++T   
Sbjct: 236 DLAWEIYQEVVRSGVQVNVYTL-NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVT--- 291

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           +  L+  +    ++++A E++D M   G +P  F +  +++ LCK      A  + DEM 
Sbjct: 292 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 351

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +    P    +  LL   C+   +++A+ +  +M   G  PD+V ++ L+   ++ G + 
Sbjct: 352 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A +  ++M+  G  P+   YT+LI   CR   M EA +   EM   GC  DVVTY T++
Sbjct: 412 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 471

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G CK + +    E+   M +RG+ P+  T+  ++  + K   + + V L   M +    
Sbjct: 472 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 531

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  YN +I   CK  E+++   +WN+M +  + P   S+ ++++G+   GC+ EA   
Sbjct: 532 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 591

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           + EMV +G        T   ++    RA     A +  S ++ KG   +   +   I+  
Sbjct: 592 WDEMVEKGF--EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGF 649

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
               ++  A +    M ++ ++P   T+  ++ G  +
Sbjct: 650 IKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSR 686



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 169/316 (53%), Gaps = 1/316 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           ++ IL+  F    ++ +A++V DEM + GC  D   +  +L+ LCK   + EA +LF EM
Sbjct: 431 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 490

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            ER   P    FT+L+ G+ K+G + +A  +   M     +PD+V YN L+ G+ +  +M
Sbjct: 491 TERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEM 550

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
               EL  +M  +   PN  SY +LI   C M  + EA R + EM   G EA ++T  T+
Sbjct: 551 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 610

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G+C++    +  E L +M+ +GI+P+ +TY  ++    K+E ++    L+ +M   G 
Sbjct: 611 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL 670

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PDV  YNV++    + G ++EA  +  +M    ++P   ++  +++G + Q  L EA  
Sbjct: 671 LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFR 730

Query: 475 YFKEMVGRGLLSAPQY 490
              EM+ RG +   ++
Sbjct: 731 VHDEMLQRGFVPDDKF 746



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 147/590 (24%), Positives = 249/590 (42%), Gaps = 88/590 (14%)

Query: 3   RSSSKALSLLTKHRRFSFAPRPNTTTS-HVESTATTTNQLNSNLVCLKTKEDDCKCNNTT 61
           R+ ++  S L      S AP PN++       T  T+  LN + V     ED  +  + +
Sbjct: 14  RTLTRKTSSLHTKTLLSSAPNPNSSYGIPALQTLETSTTLNPSSV-----EDPNQSTSLS 68

Query: 62  DTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLG 121
           D        S   EK+   LK+      KL  +L++    L   +   V+ +C +   LG
Sbjct: 69  D--------SFLTEKVLLNLKQ-----GKLN-SLRNLLFRLDSVVVVDVLYKCRENLQLG 114

Query: 122 YRYY-MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
            R+     S  PN+ HS   + A+I  L + R+     A                  VIL
Sbjct: 115 QRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQA------------------VIL 156

Query: 181 MRRFASARMVKKA----IEVLDEMP-KYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
                  RMV+K+    +E+++ +   YG C  +  VF  L+    +   ++E  + F  
Sbjct: 157 -------RMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRV 209

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           ++ +             G C                       I   N+LL G  ++G +
Sbjct: 210 LKSK-------------GLCVS---------------------INACNSLLGGLVKVGWV 235

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A+E+ +E+ R G   N  +  ++I ALC+ +K+E       +ME  G   DVVTY TL
Sbjct: 236 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 295

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I+ +C+   ++  +E++DSM  +G+ P   TY  I+    K  +      ++ EM KIG 
Sbjct: 296 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGM 355

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD + YN+++   C+   + +A  +++EM +  + P   SF  ++      GCL +A +
Sbjct: 356 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 415

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           YF++M   GL  AP       L+    R   +  A  V   ++ +GC L+V  +   ++ 
Sbjct: 416 YFRDMKNAGL--APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNG 473

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           L     + EA     +M +  V P   TF  L+ G  K  N   A  + E
Sbjct: 474 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 523



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 136/280 (48%), Gaps = 6/280 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++  L K +       L  EM  R   P   T   F  L+  ++    + KA+ + +
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT---FTTLINGYSKDGNMNKAVTLFE 523

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M +   +PD   +  L+D  CK S +++  +L+++M   R  P+   +  L+ G+C  G
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 583

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EA  +  +M + GFE  I+  N ++ GY + G    A E L  M  KG  P+  +Y 
Sbjct: 584 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 643

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    + E M+ A     +ME SG   DV+TY  +++GF +  ++     I+  MI+R
Sbjct: 644 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIER 703

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           G+ P++ TY  ++  H  +  L+E   +  EM + G VPD
Sbjct: 704 GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 211/442 (47%), Gaps = 21/442 (4%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWA---SKQPNYVHSYDVYRALIKSLSKMRKFGA 156
           V+++ GL  R +          Y + + A   S  PN +     +  +IK++ K+     
Sbjct: 170 VIIQEGLFHRALEF--------YNHVIGAKGVSISPNVL----TFNLVIKAMCKVGLVDD 217

Query: 157 VWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
              +  +M  RK +P + T   +  LM     A  + +A+ +LDEM   GC P    F  
Sbjct: 218 AIQVFRDMTIRKCEPDVYT---YCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNV 274

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           L++ LCK   +  AAKL D M  +   P+   + +L++G C +GKL +A  +L +M  + 
Sbjct: 275 LINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSK 334

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P++V Y  +++G  + G+  D   +L  M  +G   N   Y+ LI  L +  K +EA 
Sbjct: 335 CVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAM 394

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F EM   G E + + Y+ +I G C+  K D   E+L  M  +G  PN  T   +M   
Sbjct: 395 HLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGF 454

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            +       VE+  +M K     +   Y+V+I   CK G++KEA+ VW +M      P  
Sbjct: 455 FEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDV 514

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  M++G    G + +A + + EM+ +G  S P   T   LLN+L +   +  A D+ 
Sbjct: 515 VAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLL 574

Query: 514 SCIVTKGCELNVYAWTIWIHSL 535
           + ++ +GC+ ++   TI++  L
Sbjct: 575 NSMLDRGCDPDLVTCTIFLRML 596



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 137/561 (24%), Positives = 250/561 (44%), Gaps = 58/561 (10%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           + +    K  +Y      + +LI + + +  F ++  +++ M+ EK ++I  + F+++ +
Sbjct: 75  KIFKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEK-RVIFEKCFIVIFK 133

Query: 183 RFASARMVKKAIEVLDEMP-KYGCE----------------------------------- 206
            +  A + +KA+++ D M  ++ C+                                   
Sbjct: 134 AYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGV 193

Query: 207 ---PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
              P+   F  ++ A+CK   V +A ++F +M  R  +P +  + +L+ G CK  ++ EA
Sbjct: 194 SISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEA 253

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +L +M+  G  P  V +N L++G  + G ++ A +L+  M  KGC PN  +Y  LI  
Sbjct: 254 VSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHG 313

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC   K+E+A      M  S C  +VVTY T+I+G  K  +      +L  M +RG   N
Sbjct: 314 LCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVN 373

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           +  Y  ++    K+ + +E + L  EM   G   +   Y+ VI   C+ G+  +AV V +
Sbjct: 374 EYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLS 433

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM     +P   +   ++ GF   G    A E +K+M                L++ L +
Sbjct: 434 EMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNF--TQNEVCYSVLIHGLCK 491

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD- 561
             KV+ A  VW+ ++ KGC+ +V A++  I+ L   G V++A     +M+      QPD 
Sbjct: 492 DGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDV 551

Query: 562 -TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFKMYKRRGERDLKEKAKKQVDGR 619
            T+  L+  L K  +   A ++   +     +   +T  ++ R     L+EK     DGR
Sbjct: 552 VTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRM----LREKLDPPQDGR 607

Query: 620 --------KRRARQRRWGGGR 632
                   +   RQR  G  +
Sbjct: 608 EFLDELVVRLLKRQRVLGASK 628



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 119/256 (46%), Gaps = 22/256 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY A+I  L +  K      ++ EM  +   P   T      LM+ F  A    +A+EV 
Sbjct: 411 VYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSS---LMKGFFEAGNSHRAVEVW 467

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M K+    +E  +  L+  LCK+  VKEA  ++ +M  +  KP +  ++S++ G    
Sbjct: 468 KDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIA 527

Query: 257 GKLVEAKYVLVQMKDAG--FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           G + +A  +  +M   G   +PD+V YN LL+   +   ++ A +LL  M  +GCDP+  
Sbjct: 528 GLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLV 587

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           + T+ ++ L       +  R F++               L+    K +++    +I++ M
Sbjct: 588 TCTIFLRMLREKLDPPQDGREFLD--------------ELVVRLLKRQRVLGASKIVEVM 633

Query: 375 IQRGILPNQLTYLHIM 390
           +Q+ + P   T+  ++
Sbjct: 634 LQKLLPPKHSTWARVV 649


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 209/449 (46%), Gaps = 44/449 (9%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L+   +   M    ++    M   G +P+  ++  +++ALCK+ +V +A  +  ++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E    P    +TS++ G C++  L  A  V  QM   G EP+ V Y+ L++G    G++ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +AF+L++EM   G  P A++ T  I ALC M   E+A R FV+M+  GCE +V TYT LI
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKI 412
           SG C S  +     +   M + G+ PN +TY   ++I++ + + +     + LMG   + 
Sbjct: 363 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMG---RN 419

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG----- 467
           GC P++  YN +I+  C LG+ K+A+ V N M     S    ++  ++ G+   G     
Sbjct: 420 GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 479

Query: 468 --------------------------CLIEACE----YFKEMVGRGLLSAPQYGTLKALL 497
                                     C I   E     F EMV  GL   P   T  AL+
Sbjct: 480 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL--CPNEVTYTALI 537

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +   + +K++ A  +   +   GC  NV  + + IH L    +   A   C  M++  + 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           P   T+  ++ GL K  +  +A E+  K+
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKM 626



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 209/481 (43%), Gaps = 28/481 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ALI  L           L   M ++   P  +T    + ++      R +K A  VL
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL---VENRRIKYAFVVL 413

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           + M + GC P+   +  ++   C     K+A  + + M +R    +L  + +++ G+C  
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G    A  +L  M+D G +PD   Y  L+ G+ ++ KM  AF L  EM   G  PN  +Y
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI   C+ EK++ A      M+RSGC  +V TY  LI G  K        E+   MI+
Sbjct: 534 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI PN +TY  ++    K       +E+  +M + GC+P++  Y+ +IR   + G+++E
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTL-K 494
           A N++ E+E   L P   ++V M+  ++  G +  A  +   M+  G       YG L K
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 495 ALLNSLLRAQKVEMA----------------KDVWSCIVTKGCELN----VYAWTIWIHS 534
            L N  L A +   A                +D  S +  K  EL+    V      + +
Sbjct: 714 GLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSN 773

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L + G   EA      M+   + P  + +  L+  L ++ N  +A  + + +     E  
Sbjct: 774 LSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVH 833

Query: 595 I 595
           +
Sbjct: 834 L 834



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 232/518 (44%), Gaps = 44/518 (8%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     Y  +IK    +        +M  M  R     L+T   +  +++ +  + 
Sbjct: 422 SPNIV----TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT---YNTIIKGYCDSG 474

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
               A+ +LD M   GC+PDE+ +  L+   CK S ++ A  LF+EM  +   P+   +T
Sbjct: 475 NTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYT 534

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+CK+ KL  A  +L  MK +G  P++  YN L+ G  +    + A EL K M  +
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 594

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +YT +I  LC+      A   F +M   GC  +++TY++LI    +  K++  
Sbjct: 595 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI-- 425
             +   + + G++P+++TY+ ++ A+    ++E     +G M K GC P +  Y V+I  
Sbjct: 655 ENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714

Query: 426 ----------RLA--------CKLGELKEAVNVWNEMEA--ASLSPGTDSFV--VMVHGF 463
                     RLA        C  G      +  + M A  A L PG    V   +V   
Sbjct: 715 LKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNL 774

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G   EA E    M+ +GL   P      +LL SLLR + V++A  V+  + T+GCE+
Sbjct: 775 STAGRWFEANELLGSMISQGL--CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE-- 581
           ++  +   I +L      KEA     +M+     P     A L+ GL +   + +  E  
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFL 892

Query: 582 -ITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDG 618
            I E  R M      +F +Y        K+++ K V G
Sbjct: 893 HIMETRRYMP-----SFHIYTILAREASKKRSWKHVAG 925



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 220/503 (43%), Gaps = 55/503 (10%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           R G+T  V++R        Y   +    QPN +    +Y A+I +L K         +M+
Sbjct: 192 RLGMTAAVMDR--------YHRMLSEGVQPNLL----IYNAVINALCKDGNVADAETIMK 239

Query: 163 EMRKEKPQLITTEVFVILMRRFASARM--VKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           ++ + +   ++ + F          R   +  A++V ++M K GCEP+   +  L++ LC
Sbjct: 240 KVFESE---MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 221 KNSSVKEAAKLFDEM------------------------------------RERFKPSLR 244
            +  V EA  L  EM                                     +  +P++ 
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +T+L+ G C  G L  A  +  +M   G  P+ V YN L++   +  ++  AF +L  M
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            R GC PN  +Y  +I+  C +   ++A      M + G  A++VTY T+I G+C S   
Sbjct: 417 GRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 476

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
                ILD M   G  P++ +Y  ++    K  ++E    L  EM   G  P+   Y  +
Sbjct: 477 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTAL 536

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK  +L  A ++   M+ +   P   ++ V++HG   Q     A E  K M+  G+
Sbjct: 537 IDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T  A+++ L +     +A ++++ ++ +GC  N+  ++  I +L   G V+EA
Sbjct: 597 F--PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654

Query: 545 CSYCLDMMDADVMPQPDTFAKLM 567
            +   ++    ++P   T+ K++
Sbjct: 655 ENLFAELERHGLIPDEITYVKMI 677



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 133/322 (41%), Gaps = 2/322 (0%)

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L  +  +G    +  Y+ LL   +++G      +    M  +G  PN   Y  +I ALC+
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
              + +A     ++  S    D  TYT++I G C+   +D   ++ + M + G  PN +T
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++        + E  +L+ EM   G +P        I   C +G  ++A  ++ +M+
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
                P   ++  ++ G    G L  A   F  M   G+   P   T  AL+N L+  ++
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRR 405

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++ A  V + +   GC  N+  +   I      G  K+A     +M+         T+  
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 566 LMRGLKKLYNRQIAAEITEKVR 587
           +++G     N   A  I + +R
Sbjct: 466 IIKGYCDSGNTTSALRILDLMR 487



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 2/276 (0%)

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           M      L  + + G      +Y+ L+  L R+         +  M   G + +++ Y  
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I+  CK   +     I+  + +  + P+  TY  ++L H +K +L+  +++  +M K G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C P+   Y+ +I   C  G + EA ++  EM    + P   +    +      GC  +A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             F +M  +G    P   T  AL++ L  +  +++A  ++  +   G   N   +   I+
Sbjct: 341 RLFVDMKNKG--CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 398

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            L  N  +K A      M      P   T+ ++++G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 40/256 (15%)

Query: 359 CKSRK-IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           C S++ + R    LD + Q G+      Y  +++   +       ++    M   G  P+
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN VI   CK G + +A  +  ++  + +SP T ++  M+ G   +  L  A + F 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA---------------------------- 509
           +M   G    P   T   L+N L  + +V  A                            
Sbjct: 275 QMAKEG--CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 510 ----KDVWSCIV---TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
               +D W   V    KGCE NVY +T  I  L  +G +K A      M    V P   T
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 392

Query: 563 FAKLMRGLKKLYNRQI 578
           +  L+  L +  NR+I
Sbjct: 393 YNALINILVE--NRRI 406



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 9/214 (4%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
           AV  +  ++ +  P L + +V   L+   ++A    +A E+L  M   G  PD+  +  L
Sbjct: 747 AVSVMSAKLAELDPGL-SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSL 805

Query: 216 LDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           L +L +  +V  A  +F  M  +  +  L  +  L+   C+  +  EA+     M    +
Sbjct: 806 LCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTW 865

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD VV   L+ G  + G      E L  M  +   P+ + YT+L +   +    +    
Sbjct: 866 NPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKRSWKHVAG 925

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
              +++R+ C       +T  +G C    + R Y
Sbjct: 926 CITKVKRATC-------STSCTGQCFCSSLSRLY 952


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 213/458 (46%), Gaps = 8/458 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           LIK     R       +M  + K  KP +     +  ++  F  A  ++ A  VLD M +
Sbjct: 16  LIKGFFNSRNIDKATRVMGILEKHGKPDVFA---YNAVISGFCKANRIESAKTVLDRMKR 72

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKEGKLV 260
            G  PD      ++   C    +  A K+F+E+      KP+L  +T L+  +  EG + 
Sbjct: 73  KGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGID 132

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +L +M   G EPD   YN +  G  + GK+  AFE ++ +  +GC P+  +Y +L+
Sbjct: 133 EALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILL 192

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
           +AL    K +E  +   E+   GCE +VVTY+ LIS  C+  KI+    ++  M ++G+ 
Sbjct: 193 RALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLT 252

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           P+   Y  ++ A  ++ +L+  +E +  M   G +PD+ NYN ++   CK G    AV +
Sbjct: 253 PDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEI 312

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           + +++     P   S+  M+      G    A     +M+ +G+   P   T  +L++ L
Sbjct: 313 FGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGI--DPDVITYNSLISCL 370

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            R   V+ A  + + +++   + N+ ++   +  L     + +A      M++    P  
Sbjct: 371 CRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNE 430

Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK 598
            T+  L+ G+    +R  A E+   +  M A  + +FK
Sbjct: 431 TTYTLLIEGIGFSGSRTQAMELANSLYIMNAISEDSFK 468



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 184/366 (50%), Gaps = 3/366 (0%)

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           +PD  +   L+     + ++ +A ++   + +  KP +  + +++ G+CK  ++  AK V
Sbjct: 7   QPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTV 66

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE-MRRKGCDPNANSYTVLIQALC 324
           L +MK  GF PD+V +N ++  +   GK+  A ++ +E ++   C P   +YT+LI+A  
Sbjct: 67  LDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYI 126

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
               ++EA +   EM   G E D  TY  +  G CK  K+DR +E + ++  RG  P+ +
Sbjct: 127 LEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVI 186

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY  ++ A   + + +E  + M E+   GC P+V  Y+++I   C+ G+++E+VN+   M
Sbjct: 187 TYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVM 246

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           +   L+P    +  ++  F  +G L  A E+   M+  G L  P       ++ +L +  
Sbjct: 247 KEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFL--PDIVNYNTIMAALCKNG 304

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
             + A +++  +   GC  NV ++   + +L+S+G    A      M+   + P   T+ 
Sbjct: 305 NGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYN 364

Query: 565 KLMRGL 570
            L+  L
Sbjct: 365 SLISCL 370



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 149/325 (45%), Gaps = 6/325 (1%)

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           ++PD+++   L+ G+     +  A  ++  + + G  P+  +Y  +I   C+  ++E A 
Sbjct: 6   YQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAK 64

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLA 392
                M+R G   DVVT+  +I  FC   KID   ++ + +++     P  +TY  ++ A
Sbjct: 65  TVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           +  +  ++E ++L+ EM   G  PD   YNV+ R  CK G++  A      + +    P 
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++ +++   L QG   E  ++  E+  RG    P   T   L++SL R  K+E + ++
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRG--CEPNVVTYSILISSLCRDGKIEESVNL 242

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKLMRGLK 571
              +  KG   + Y +   I +    G +  A  + LD M  D  +P    +  +M  L 
Sbjct: 243 VKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEF-LDCMICDGFLPDIVNYNTIMAALC 301

Query: 572 KLYNRQIAAEITEKVRKMAAERQIT 596
           K  N   A EI  K+ ++     ++
Sbjct: 302 KNGNGDHAVEIFGKLDEVGCPPNVS 326


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 202/409 (49%), Gaps = 9/409 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           V+  L+K L    +          M K+  P ++T   +  L+     A    +A  +L 
Sbjct: 94  VHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMT---YTALVHALCKAGKFDEAQGMLR 150

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   GC PD   F  L+D LCK  S ++A ++ +++ +R    S   F +++   C + 
Sbjct: 151 EMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKY 210

Query: 258 KLVE-AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             VE A  VL  +   GF P ++++N +++G+ +   +  A++LL+ M  KGC PN  ++
Sbjct: 211 NSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTF 270

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T+LI  LC+  ++ EA +   +M   GC  +VVTY+T+I+G CK  ++D  YE+   M +
Sbjct: 271 TILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMER 330

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           R   PN +T+  ++    K + +EE  +L   MR+ GC PD+  YN +I   CK  ++ E
Sbjct: 331 RNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDE 390

Query: 437 AVNVWNEMEAASLSPGTD-SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           A  ++  +  + +S     ++  + HG+   G + +AC  F  +V +G   +P   T  +
Sbjct: 391 AFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF--SPDLATYTS 448

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L+    +  +     ++   + +KG    V   +  +  LF   H + A
Sbjct: 449 LILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 497



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 198/393 (50%), Gaps = 4/393 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+R F+SA  +  AI++L+EM   G E +  V   L+  LC    V EA + F  M 
Sbjct: 60  YGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMA 119

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           +   P +  +T+L++  CK GK  EA+ +L +M   G  PD V ++ L+ G  + G    
Sbjct: 120 KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQ 179

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALC-RMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           AF +L+++ ++G   +  ++  +IQ LC +   +E A++    +   G    V+ +  +I
Sbjct: 180 AFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVI 239

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +GFCK++ +D  Y++L+ MI++G +PN  T+  ++    K   + E  +L+ +M   GC 
Sbjct: 240 NGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCS 299

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+V  Y+ VI   CK G++ +A  ++  ME  +  P   +  +++ G      + EA + 
Sbjct: 300 PNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQL 359

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE-LNVYAWTIWIHS 534
           +  M   G   AP   T  +L++ L ++ +V+ A  ++  I   G    N   ++   H 
Sbjct: 360 YHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 417

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             + G + +AC     ++D    P   T+  L+
Sbjct: 418 YAALGRMADACRIFSMLVDKGFSPDLATYTSLI 450



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 171/372 (45%), Gaps = 40/372 (10%)

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F   C LD LC+ +  +EA  LF     R   P+   +  L+ G+   G L  A  +L +
Sbjct: 23  FSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEE 82

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           MK +GFE + VV+  L+ G    G++ +A E  + M  K C P+  +YT L+ ALC+  K
Sbjct: 83  MKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGK 141

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI--------- 379
            +EA     EM   GC  D VT++TLI G CK    ++ + +L+ +IQRG+         
Sbjct: 142 FDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFET 201

Query: 380 ---------------------------LPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
                                       P  L +  ++    K ++L+   +L+  M + 
Sbjct: 202 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK 261

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           GCVP+V  + ++I   CK   + EA  +  +M     SP   ++  +++G   QG + +A
Sbjct: 262 GCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDA 321

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            E F+ M  R     P   T   L++ L +A+++E A+ ++  +   GC  ++  +   I
Sbjct: 322 YELFQLMERRN--CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 379

Query: 533 HSLFSNGHVKEA 544
             L  +  V EA
Sbjct: 380 DGLCKSFQVDEA 391



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/523 (22%), Positives = 219/523 (41%), Gaps = 71/523 (13%)

Query: 80  ILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYD 139
           I+++  ++   +ELA +  GVV+  G T  V+                            
Sbjct: 202 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVL---------------------------- 233

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           ++  +I    K +   + + L+E M  EK  +     F IL+     A  V +A ++L++
Sbjct: 234 MFNLVINGFCKAKDLDSAYKLLEVM-IEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK 292

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M   GC P+   +  +++ LCK   V +A +LF  M R    P++     L+ G CK  +
Sbjct: 293 MVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKR 352

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYT 317
           + EA+ +  +M++ G  PDI+ YN+L+ G  +  ++ +AF+L + +   G    NA +Y+
Sbjct: 353 IEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYS 412

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L      + +M +A R F  +   G   D+ TYT+LI  +CK+ +     E+++ M  +
Sbjct: 413 TLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASK 472

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR----------- 426
           G  P   T   ++    +    E  ++L   M   GC  D   YN+V+            
Sbjct: 473 GFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKA 532

Query: 427 LA---------------------------CKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           LA                           C++G+  +A  + ++M     +    S+  +
Sbjct: 533 LAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRL 592

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G        EA + F+ MV  G   AP+  T+  +++ L  A KV+ A ++   +   
Sbjct: 593 LSGLSRLQRWDEATQVFEAMVSAG--PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKL 650

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           GC  ++      I     +G    A     +M +A + P   T
Sbjct: 651 GCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTT 693



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 106/200 (53%), Gaps = 4/200 (2%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA----AKLFDEMRERFKPSLRHF 246
           ++AI++ D M   GC  D  ++  +++ + + S   +A     ++ D+   +F PS    
Sbjct: 495 ERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAV 554

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L+   C+ GK  +AK +L +M + GF   +  YN LLSG +++ +  +A ++ + M  
Sbjct: 555 DALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVS 614

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P  ++  V+I  LC   K+++A      M + GC  D+ T  TLI G+CKS + D 
Sbjct: 615 AGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADL 674

Query: 367 CYEILDSMIQRGILPNQLTY 386
             ++L+ M + G+ PN  T+
Sbjct: 675 ARKLLEEMTEAGLEPNDTTH 694



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 4/292 (1%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N  L    ++ +  +A  L +    + C PN  +Y +LI+       ++ A +   EM+ 
Sbjct: 26  NCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKS 85

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SG E + V +TTL+ G C + ++    E   +M  +   P+ +TY  ++ A  K  + +E
Sbjct: 86  SGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGKFDE 144

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              ++ EM   GC PD   ++ +I   CK G  ++A  V  ++    +     +F  ++ 
Sbjct: 145 AQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQ 204

Query: 462 GFLGQGCLIE-ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
               +   +E A +    ++ +G    P       ++N   +A+ ++ A  +   ++ KG
Sbjct: 205 RLCNKYNSVELASKVLGVVIAKGF--TPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKG 262

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           C  NV+ +TI I  L     V EA      M+     P   T++ ++ GL K
Sbjct: 263 CVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCK 314


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 176/322 (54%), Gaps = 3/322 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L+  F     V  A+ ++D+M + G +PD   +  ++D+LCK   V +A   F E+ R+ 
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T+L+ G C   +  +A  +L  M      P+++ Y+ LL  + + GK+ +A 
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL +EM R   DP+  +Y+ L+  LC  ++++EAN+ F  M   GC ADVV+Y TLI+GF
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK+++++   ++   M QRG++ N +TY  ++    +  ++++  E   +M   G  PD+
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN+++   C  GEL++A+ ++ +M+   +     ++  ++ G    G + EA   F  
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460

Query: 479 MVGRGLLSAPQYGTLKALLNSL 500
           +  +GL   P   T   +++ L
Sbjct: 461 LSLKGL--KPDIVTYTTMMSGL 480



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 203/428 (47%), Gaps = 8/428 (1%)

Query: 148 LSKMR----KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           LSK R    K      L  +M K +P     + F  L+      +     I +  +M   
Sbjct: 56  LSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGKKMEVL 114

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G   D + F  +++  C    V  A  +  +M +  ++P      SL+ G+C+  ++ +A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             ++ +M + G++PDIV YN ++    +  ++ DAF+  KE+ RKG  PN  +YT L+  
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC   +  +A R   +M +     +V+TY+ L+  F K+ K+    E+ + M++  I P+
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++      + ++E  ++   M   GC+ DV +YN +I   CK   +++ + ++ 
Sbjct: 295 IVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM    L   T ++  ++ GF   G + +A E+F +M   G+  +P   T   LL  L  
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCD 412

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             ++E A  ++  +  +  +L++  +T  I  +   G V+EA S    +    + P   T
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472

Query: 563 FAKLMRGL 570
           +  +M GL
Sbjct: 473 YTTMMSGL 480



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 196/402 (48%), Gaps = 15/402 (3%)

Query: 180 LMRRFASARM----VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           L  R +  R+    +  AI++  +M K    P    F  LL A+ K         L  +M
Sbjct: 52  LRERLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKM 111

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                +  L  F  ++  +C   ++  A  +L +M   G+EPD V   +L++G+ +  ++
Sbjct: 112 EVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRV 171

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           +DA  L+ +M   G  P+  +Y  +I +LC+ +++ +A   F E+ER G   +VVTYT L
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 231

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ++G C S +      +L  MI++ I PN +TY  ++ A  K  ++ E  EL  EM ++  
Sbjct: 232 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 291

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD+  Y+ ++   C    + EA  +++ M +        S+  +++GF     + +  +
Sbjct: 292 DPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMK 351

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F+EM  RGL+S     T   L+    +A  V+ A++ +S +   G   +++ + I +  
Sbjct: 352 LFREMSQRGLVSNTV--TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409

Query: 535 LFSNGHVKEACSYCLDM----MDADVMPQPDTFAKLMRGLKK 572
           L  NG +++A     DM    MD D++    T+  ++RG+ K
Sbjct: 410 LCDNGELEKALVIFEDMQKREMDLDIV----TYTTVIRGMCK 447



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 164/341 (48%), Gaps = 11/341 (3%)

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KP 169
           NR  DA +L  +      K P+ V     Y A+I SL K ++    +   +E+ ++  +P
Sbjct: 169 NRVSDAVSLVDKMVEIGYK-PDIV----AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRP 223

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            ++T   +  L+    ++     A  +L +M K    P+   +  LLDA  KN  V EA 
Sbjct: 224 NVVT---YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 230 KLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +LF+EM R    P +  ++SL+ G C   ++ EA  +   M   G   D+V YN L++G+
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +  ++ D  +L +EM ++G   N  +Y  LIQ   +   +++A   F +M+  G   D+
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY  L+ G C + ++++   I + M +R +  + +TY  ++    K  ++EE   L   
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +   G  PD+  Y  ++   C  G L E   ++ +M+   L
Sbjct: 461 LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 209/449 (46%), Gaps = 44/449 (9%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L+   +   M    ++    M   G +P+  ++  +++ALCK+ +V +A  +  ++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E    P    +TS++ G C++  L  A  V  QM   G EP+ V Y+ L++G    G++ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +AF+L++EM   G  P A++ T  I ALC M   E+A R FV+M+  GCE +V TYT LI
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKI 412
           SG C S  +     +   M + G+ PN +TY   ++I++ + + +     + LMG   + 
Sbjct: 363 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMG---RN 419

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG----- 467
           GC P++  YN +I+  C LG+ K+A+ V N M     S    ++  ++ G+   G     
Sbjct: 420 GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 479

Query: 468 --------------------------CLIEACE----YFKEMVGRGLLSAPQYGTLKALL 497
                                     C I   E     F EMV  GL   P   T  AL+
Sbjct: 480 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL--CPNEVTYTALI 537

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +   + +K++ A  +   +   GC  NV  + + IH L    +   A   C  M++  + 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           P   T+  ++ GL K  +  +A E+  K+
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKM 626



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 209/481 (43%), Gaps = 28/481 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ALI  L           L   M ++   P  +T    + ++      R +K A  VL
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL---VENRRIKYAFVVL 413

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           + M + GC P+   +  ++   C     K+A  + + M +R    +L  + +++ G+C  
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G    A  +L  M+D G +PD   Y  L+ G+ ++ KM  AF L  EM   G  PN  +Y
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI   C+ EK++ A      M+RSGC  +V TY  LI G  K        E+   MI+
Sbjct: 534 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI PN +TY  ++    K       +E+  +M + GC+P++  Y+ +IR   + G+++E
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTL-K 494
           A N++ E+E   L P   ++V M+  ++  G +  A  +   M+  G       YG L K
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 495 ALLNSLLRAQKVEMA----------------KDVWSCIVTKGCELN----VYAWTIWIHS 534
            L N  L A +   A                +D  S +  K  EL+    V      + +
Sbjct: 714 GLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSN 773

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L + G   EA      M+   + P  + +  L+  L ++ N  +A  + + +     E  
Sbjct: 774 LSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVH 833

Query: 595 I 595
           +
Sbjct: 834 L 834



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 204/441 (46%), Gaps = 36/441 (8%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     Y  +IK    +        +M  M  R     L+T   +  +++ +  + 
Sbjct: 422 SPNIV----TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT---YNTIIKGYCDSG 474

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
               A+ +LD M   GC+PDE+ +  L+   CK S ++ A  LF+EM  +   P+   +T
Sbjct: 475 NTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYT 534

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+CK+ KL  A  +L  MK +G  P++  YN L+ G  +    + A EL K M  +
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 594

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +YT +I  LC+      A   F +M   GC  +++TY++LI    +  K++  
Sbjct: 595 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI-- 425
             +   + + G++P+++TY+ ++ A+    ++E     +G M K GC P +  Y V+I  
Sbjct: 655 ENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714

Query: 426 ----------RLA--------CKLGELKEAVNVWNEMEA--ASLSPGTDSFV--VMVHGF 463
                     RLA        C  G      +  + M A  A L PG    V   +V   
Sbjct: 715 LKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNL 774

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G   EA E    M+ +GL   P      +LL SLLR + V++A  V+  + T+GCE+
Sbjct: 775 STAGRWFEANELLGSMISQGL--CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 524 NVYAWTIWIHSLFSNGHVKEA 544
           ++  +   I +L      KEA
Sbjct: 833 HLNGYKELICALCQLHRRKEA 853



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 220/503 (43%), Gaps = 55/503 (10%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           R G+T  V++R        Y   +    QPN +    +Y A+I +L K         +M+
Sbjct: 192 RLGMTAAVMDR--------YHRMLSEGVQPNLL----IYNAVINALCKDGNVADAETIMK 239

Query: 163 EMRKEKPQLITTEVFVILMRRFASARM--VKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           ++ + +   ++ + F          R   +  A++V ++M K GCEP+   +  L++ LC
Sbjct: 240 KVFESE---MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 221 KNSSVKEAAKLFDEM------------------------------------RERFKPSLR 244
            +  V EA  L  EM                                     +  +P++ 
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +T+L+ G C  G L  A  +  +M   G  P+ V YN L++   +  ++  AF +L  M
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            R GC PN  +Y  +I+  C +   ++A      M + G  A++VTY T+I G+C S   
Sbjct: 417 GRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 476

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
                ILD M   G  P++ +Y  ++    K  ++E    L  EM   G  P+   Y  +
Sbjct: 477 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTAL 536

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK  +L  A ++   M+ +   P   ++ V++HG   Q     A E  K M+  G+
Sbjct: 537 IDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T  A+++ L +     +A ++++ ++ +GC  N+  ++  I +L   G V+EA
Sbjct: 597 F--PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654

Query: 545 CSYCLDMMDADVMPQPDTFAKLM 567
            +   ++    ++P   T+ K++
Sbjct: 655 ENLFAELERHGLIPDEITYVKMI 677



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 153/363 (42%), Gaps = 34/363 (9%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y ALI    K  K     +L+E M++   +P +   + + +L+        
Sbjct: 528 PNEV----TYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV---QTYNVLIHGLTKQNN 580

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
              A E+   M + G  P+   +  ++D LCKN S   A ++F++M E+   P+L  ++S
Sbjct: 581 FSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSS 640

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+    +EGK+ EA+ +  +++  G  PD + Y  ++  Y   GK+  AF  L  M + G
Sbjct: 641 LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 700

Query: 309 CDPNANSYTVLIQAL--------------------CRMEKMEEANRAFVEMERSGCEAD- 347
           C P   +Y VLI+ L                    C          A   M     E D 
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 348 ---VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
              V     L+S    + +     E+L SMI +G+ P+Q  Y  ++ +  +   ++  + 
Sbjct: 761 GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMG 820

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   GC   ++ Y  +I   C+L   KEA   +  M   + +P      V++ G L
Sbjct: 821 VFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLL 880

Query: 465 GQG 467
             G
Sbjct: 881 RDG 883



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 133/322 (41%), Gaps = 2/322 (0%)

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L  +  +G    +  Y+ LL   +++G      +    M  +G  PN   Y  +I ALC+
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
              + +A     ++  S    D  TYT++I G C+   +D   ++ + M + G  PN +T
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++        + E  +L+ EM   G +P        I   C +G  ++A  ++ +M+
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
                P   ++  ++ G    G L  A   F  M   G+   P   T  AL+N L+  ++
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRR 405

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++ A  V + +   GC  N+  +   I      G  K+A     +M+         T+  
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 566 LMRGLKKLYNRQIAAEITEKVR 587
           +++G     N   A  I + +R
Sbjct: 466 IIKGYCDSGNTTSALRILDLMR 487



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 2/276 (0%)

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           M      L  + + G      +Y+ L+  L R+         +  M   G + +++ Y  
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I+  CK   +     I+  + +  + P+  TY  ++L H +K +L+  +++  +M K G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C P+   Y+ +I   C  G + EA ++  EM    + P   +    +      GC  +A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             F +M  +G    P   T  AL++ L  +  +++A  ++  +   G   N   +   I+
Sbjct: 341 RLFVDMKNKG--CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 398

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            L  N  +K A      M      P   T+ ++++G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 121/286 (42%), Gaps = 32/286 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y +LI++L +  K      L  E+  E+  LI  E+ +V ++  +  +  V+ A   L 
Sbjct: 637 TYSSLIRALGQEGKVEEAENLFAEL--ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 199 EMPKYGCEPDEFVFGCLLDALCKN------------------------SSVKEAAKLFDE 234
            M K GC+P  + +G L+  L KN                        ++ ++A  +   
Sbjct: 695 RMIKAGCQPTLWTYGVLIKGL-KNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSA 753

Query: 235 MRERFKP--SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
                 P  S++   +L+      G+  EA  +L  M   G  PD   YN+LL    ++ 
Sbjct: 754 KLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVR 813

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
            +  A  + K M  +GC+ + N Y  LI ALC++ + +EA   F  M       D V   
Sbjct: 814 NVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQA 873

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
            LI G  +    D C E L  M  R  +P+   +++ +LA E  ++
Sbjct: 874 VLIDGLLRDGYKDLCMEFLHIMETRRYMPS--FHIYTILAREASKK 917



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 40/256 (15%)

Query: 359 CKSRK-IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           C S++ + R    LD + Q G+      Y  +++   +       ++    M   G  P+
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN VI   CK G + +A  +  ++  + +SP T ++  M+ G   +  L  A + F 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA---------------------------- 509
           +M   G    P   T   L+N L  + +V  A                            
Sbjct: 275 QMAKEG--CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 510 ----KDVWSCIV---TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
               +D W   V    KGCE NVY +T  I  L  +G +K A      M    V P   T
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 392

Query: 563 FAKLMRGLKKLYNRQI 578
           +  L+  L +  NR+I
Sbjct: 393 YNALINILVE--NRRI 406


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 202/409 (49%), Gaps = 9/409 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           V+  L+K L    +          M K+  P ++T   +  L+     A    +A  +L 
Sbjct: 46  VHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMT---YTALVHALCKAGKFDEAQGMLR 102

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   GC PD   F  L+D LCK  S ++A ++ +++ +R    S   F +++   C + 
Sbjct: 103 EMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKY 162

Query: 258 KLVE-AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             VE A  VL  +   GF P ++++N +++G+ +   +  A++LL+ M  KGC PN  ++
Sbjct: 163 NSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTF 222

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T+LI  LC+  ++ EA +   +M   GC  +VVTY+T+I+G CK  ++D  YE+   M +
Sbjct: 223 TILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMER 282

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           R   PN +T+  ++    K + +EE  +L   MR+ GC PD+  YN +I   CK  ++ E
Sbjct: 283 RNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDE 342

Query: 437 AVNVWNEMEAASLSPGTD-SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           A  ++  +  + +S     ++  + HG+   G + +AC  F  +V +G   +P   T  +
Sbjct: 343 AFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF--SPDLATYTS 400

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L+    +  +     ++   + +KG    V   +  +  LF   H + A
Sbjct: 401 LILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 449



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 198/393 (50%), Gaps = 4/393 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+R F+SA  +  AI++L+EM   G E +  V   L+  LC    V EA + F  M 
Sbjct: 12  YGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMA 71

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           +   P +  +T+L++  CK GK  EA+ +L +M   G  PD V ++ L+ G  + G    
Sbjct: 72  KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQ 131

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALC-RMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           AF +L+++ ++G   +  ++  +IQ LC +   +E A++    +   G    V+ +  +I
Sbjct: 132 AFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVI 191

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +GFCK++ +D  Y++L+ MI++G +PN  T+  ++    K   + E  +L+ +M   GC 
Sbjct: 192 NGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCS 251

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+V  Y+ VI   CK G++ +A  ++  ME  +  P   +  +++ G      + EA + 
Sbjct: 252 PNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQL 311

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE-LNVYAWTIWIHS 534
           +  M   G   AP   T  +L++ L ++ +V+ A  ++  I   G    N   ++   H 
Sbjct: 312 YHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 369

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             + G + +AC     ++D    P   T+  L+
Sbjct: 370 YAALGRMADACRIFSMLVDKGFSPDLATYTSLI 402



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/523 (22%), Positives = 218/523 (41%), Gaps = 71/523 (13%)

Query: 80  ILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYD 139
           I+++  ++   +ELA +  GVV+  G T  V+                            
Sbjct: 154 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVL---------------------------- 185

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           ++  +I    K +   + + L+E M  EK  +     F IL+     A  V +A ++L++
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVM-IEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK 244

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M   GC P+   +  +++ LCK   V +A +LF  M R    P++     L+ G CK  +
Sbjct: 245 MVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKR 304

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYT 317
           + EA+ +  +M++ G  PDI+ YN+L+ G  +  ++ +AF+L + +   G    NA +Y+
Sbjct: 305 IEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYS 364

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L      + +M +A R F  +   G   D+ TYT+LI  +CK+ +     E+++ M  +
Sbjct: 365 TLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASK 424

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR----------- 426
           G  P   T   ++    +    E  ++L   M   GC  D   YN+V+            
Sbjct: 425 GFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKA 484

Query: 427 LA---------------------------CKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           LA                           C++G   +A  + ++M     +    S+  +
Sbjct: 485 LAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGL 544

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G        EA + F+ MV  G   AP+  T+  +++ L  A KV+ A ++   +   
Sbjct: 545 LSGLSRLQRWDEATQVFEAMVSAG--PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKL 602

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           GC  ++      I     +G    A     +M +A + P   T
Sbjct: 603 GCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTT 645



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 72/339 (21%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--------------------------- 308
           P+   Y  L+ G++  G +  A +LL+EM+  G                           
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 309 -------CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
                  C P+  +YT L+ ALC+  K +EA     EM   GC  D VT++TLI G CK 
Sbjct: 67  FRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKF 126

Query: 362 RKIDRCYEILDSMIQRGI------------------------------------LPNQLT 385
              ++ + +L+ +IQRG+                                     P  L 
Sbjct: 127 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 186

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           +  ++    K ++L+   +L+  M + GCVP+V  + ++I   CK   + EA  +  +M 
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
               SP   ++  +++G   QG + +A E F+ M  R     P   T   L++ L +A++
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRN--CPPNVVTHNILIDGLCKAKR 304

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           +E A+ ++  +   GC  ++  +   I  L  +  V EA
Sbjct: 305 IEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEA 343



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 4/200 (2%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCK----NSSVKEAAKLFDEMRERFKPSLRHF 246
           ++AI++ D M   GC  D  ++  +++ + +    N ++    ++ D+   +F PS    
Sbjct: 447 ERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAV 506

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L+   C+ G+  +AK +L +M + GF   +  YN LLSG +++ +  +A ++ + M  
Sbjct: 507 DALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVS 566

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P  ++  V+I  LC   K+++A      M + GC  D+ T  TLI G+CKS + D 
Sbjct: 567 AGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADL 626

Query: 367 CYEILDSMIQRGILPNQLTY 386
             ++L+ M + G+ PN  T+
Sbjct: 627 ARKLLEEMTEAGLEPNDTTH 646



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 120/265 (45%), Gaps = 4/265 (1%)

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  +Y +LI+       ++ A +   EM+ +G E + V +TTL+ G C + ++    
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEAL 64

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E   +M  +   P+ +TY  ++ A  K  + +E   ++ EM   GC PD   ++ +I   
Sbjct: 65  EHFRAM-AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMVGRGLLSA 487
           CK G  ++A  V  ++    +     +F  ++     +   +E A +    ++ +G    
Sbjct: 124 CKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF--T 181

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P       ++N   +A+ ++ A  +   ++ KGC  NV+ +TI I  L     V EA   
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
              M+     P   T++ ++ GL K
Sbjct: 242 LEKMVTGGCSPNVVTYSTVINGLCK 266


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 209/417 (50%), Gaps = 14/417 (3%)

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFA----SARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           A +++MRK     + T  + ++++       SA  +++A+E   EM   G EPD   +  
Sbjct: 123 AHLQDMRKSSSS-VATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHI 181

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           LL AL  +  + EA  LF  M     P +  +  L+ G+CK G+  EA+ ++ ++  AG+
Sbjct: 182 LLSALSDSGRMAEAHALFSAMT--CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGY 239

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           EP++  Y+ +++ Y ++ K+ +A+E+  +M    C PNA ++  LI   C+   +E+A +
Sbjct: 240 EPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIK 299

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSR-KIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
            F EME+ GC+A +VTY TLI   CK R  +    ++ + +   G+ P  +TY  ++   
Sbjct: 300 LFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF 359

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
                L E ++   EM    C P+V  Y+++I   CK+  +KEA     +M+A   +P  
Sbjct: 360 CDARRLSEAMQYFDEMEG-KCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTV 418

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  +++GF   G L  A  +F++M   G   AP       L++ L +A++      + 
Sbjct: 419 VTYGGLINGFCKCGELKSALLFFEKMKLAG--CAPNTVIFNTLIDGLCKAERANDGLRLL 476

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +  +GC+ +V  +   I  L S   V++A     D M     P   TF  L+RGL
Sbjct: 477 CHMHAEGCKPDVITYNCLISGLCSANRVEDA-QRLFDGMAC--APNVTTFNFLIRGL 530



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 209/474 (44%), Gaps = 52/474 (10%)

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            AL+  L   RK      L +E+      P       + +L+R F     + +A+ V  +
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPN---AHTYNVLIRGFCKGGQMHQAVSVFSD 57

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---------------------R 238
           M   G  P+      LL  LC+   +  A KLF EM+                      R
Sbjct: 58  MKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR 117

Query: 239 FKPSLRH---------------FTSLLYGWCKEGK----LVEAKYVLVQMKDAGFEPDIV 279
            + +L H               +  +L G C E K    L +A     +MK +G EPD+ 
Sbjct: 118 VRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLE 177

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y+ LLS  +  G+M +A  L   M    C P+  +Y VL+   C++ +  EA     E+
Sbjct: 178 SYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 234

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            ++G E +V TY+ +I+ +CK  K++  +E+   MI+   +PN +T+  ++    K   L
Sbjct: 235 LKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGML 294

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLAC-KLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           E+ ++L  EM KIGC   +  YN +I   C K G +  AV+++N++E A L+P   ++  
Sbjct: 295 EDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNS 354

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ GF     L EA +YF EM G+    AP   T   L++ L + ++++ A      +  
Sbjct: 355 LIQGFCDARRLSEAMQYFDEMEGK---CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKA 411

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G    V  +   I+     G +K A  +   M  A   P    F  L+ GL K
Sbjct: 412 HGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCK 465



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 83/353 (23%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFA 185
           A  +PN V +Y +   +I    K+ K    W +  +M +    P  +T   F  L+  F 
Sbjct: 237 AGYEPN-VFTYSI---IINCYCKLDKVEEAWEVFMKMIESNCVPNAVT---FNTLIAGFC 289

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK------------------------ 221
            A M++ AI++  EM K GC+     +  L+D+LCK                        
Sbjct: 290 KAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTI 349

Query: 222 ---NSSVK---------EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
              NS ++         EA + FDEM  +  P++  ++ L+ G CK  ++ EA   L  M
Sbjct: 350 VTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDM 409

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           K  G+ P +V Y  L++G+ + G++  A    ++M+  GC PN   +  LI  LC+ E+ 
Sbjct: 410 KAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERA 469

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
            +  R    M   GC+ DV+TY  LISG C + +++    + D M               
Sbjct: 470 NDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM--------------- 514

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
                                   C P+V+ +N +IR  C   +++EA N+ +
Sbjct: 515 -----------------------ACAPNVTTFNFLIRGLCAQKKVEEARNILD 544



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 182/414 (43%), Gaps = 47/414 (11%)

Query: 215 LLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LL  L       +A +LF E +   F P+   +  L+ G+CK G++ +A  V   MK +G
Sbjct: 3   LLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKE------------------------------ 303
             P+    N LL G  ++G+M+ A +L +E                              
Sbjct: 63  LLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDAL 122

Query: 304 -----MRRKGCDPNANSYTVLIQALC----RMEKMEEANRAFVEMERSGCEADVVTYTTL 354
                MR+        +Y ++++ LC       ++E+A   F EM+ SG E D+ +Y  L
Sbjct: 123 AHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHIL 182

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           +S    S ++   + +  +M      P+ +TY  +M  + K  +  E   LM E+ K G 
Sbjct: 183 LSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGY 239

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+V  Y+++I   CKL +++EA  V+ +M  ++  P   +F  ++ GF   G L +A +
Sbjct: 240 EPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIK 299

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQ-KVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
            F EM   G        T   L++SL + +  V  A D+++ +   G    +  +   I 
Sbjct: 300 LFAEMEKIG--CKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 357

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
                  + EA  Y  D M+    P   T++ L+ GL K+   + AA+  E ++
Sbjct: 358 GFCDARRLSEAMQY-FDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMK 410



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 143/319 (44%), Gaps = 9/319 (2%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N LLSG     K   A  L KE+      PNA++Y VLI+  C+  +M +A   F +M+ 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SG   +  T  TL+ G C+  ++    ++   M     LP   ++  ++        + +
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLAC----KLGELKEAVNVWNEMEAASLSPGTDSFV 457
            +  + +MRK         YN+V++  C        L++A+  + EM+A+ + P  +S+ 
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +++      G + EA   F  M       +P   T   L++   +  +   A+ +   I+
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT-----CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEIL 235

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
             G E NV+ ++I I+       V+EA    + M++++ +P   TF  L+ G  K    +
Sbjct: 236 KAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLE 295

Query: 578 IAAEITEKVRKMAAERQIT 596
            A ++  ++ K+  +  I 
Sbjct: 296 DAIKLFAEMEKIGCKATIV 314


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 219/484 (45%), Gaps = 39/484 (8%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIE 195
           S+  Y A++ +L++         L   M +++ P   TT  F +  R        + A+ 
Sbjct: 144 SFRSYNAVLSTLARADCHADALLLYRRMLRDRVPP--TTFTFGVAARALCRLGRARDALA 201

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           +L  M ++GC PD  ++  ++ AL     V EAA L DEM        +  F  ++ G C
Sbjct: 202 LLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLC 261

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG----------YAQM------------- 291
             G + EA  ++ +M   G  P +V Y  LL G          YA +             
Sbjct: 262 GLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNT 321

Query: 292 --------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
                   GK+  A EL + M  KGC P+ ++Y +L+  LC++ +   A R   EME  G
Sbjct: 322 VIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKG 381

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C  ++VTY+TL+  FC++   D    +LD M  +G   N   Y  I+ A  K  +L+E +
Sbjct: 382 CAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAM 441

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L+ EM+  GC PD+  YN +I   C   ++ EA +++  +    +     ++  ++H  
Sbjct: 442 RLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHAL 501

Query: 464 LGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           L  G   E      EMV  G  L    Y     L+ +L +   V+ +  +   ++TKG +
Sbjct: 502 LHSGRWQEGLRLANEMVLHGCPLDVVSY---NGLIKALCKEGNVDRSMMLLEEMMTKGIK 558

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N +++ + I+ L   G V++A     +M++  + P   T+  L+ GL K+     A  +
Sbjct: 559 PNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNL 618

Query: 583 TEKV 586
            EK+
Sbjct: 619 LEKL 622



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 169/378 (44%), Gaps = 40/378 (10%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V++A  ++D M  +GC P    +G LL  LC+     EA  +   + E    ++    ++
Sbjct: 266 VREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEV---NVVMLNTV 322

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G   EGKL  A  +   M   G  PD+  YN L+ G  ++G+   A  +L EM  KGC
Sbjct: 323 IRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGC 382

Query: 310 DPNANSYTVLIQALCRME-----------------------------------KMEEANR 334
            PN  +Y+ L+ + CR                                     K++EA R
Sbjct: 383 APNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMR 442

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              EM+  GC+ D+ TY T+I   C + ++D    I  ++++ G++ N +TY  ++ A  
Sbjct: 443 LVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALL 502

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
                +E + L  EM   GC  DV +YN +I+  CK G +  ++ +  EM    + P   
Sbjct: 503 HSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNF 562

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           S+ ++++     G + +A E  KEM+ +GL   P   T   L+N L +      A ++  
Sbjct: 563 SYNMLINELCKAGKVRDALELSKEMLNQGL--TPDIVTYNTLINGLCKVGWTHAALNLLE 620

Query: 515 CIVTKGCELNVYAWTIWI 532
            +  +    ++  + I I
Sbjct: 621 KLPNENVHPDIVTYNILI 638



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 145/299 (48%), Gaps = 1/299 (0%)

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           EM   K        + ILM           A+ +LDEM + GC P+   +  LL + C+N
Sbjct: 340 EMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRN 399

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
               +A  + D+M  + F  + + +  ++Y   K+GKL EA  ++ +MK  G +PDI  Y
Sbjct: 400 GMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTY 459

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++       +M +A  +   +  +G   N  +Y  LI AL    + +E  R   EM  
Sbjct: 460 NTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVL 519

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  DVV+Y  LI   CK   +DR   +L+ M+ +GI PN  +Y  ++    K  ++ +
Sbjct: 520 HGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRD 579

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
            +EL  EM   G  PD+  YN +I   CK+G    A+N+  ++   ++ P   ++ +++
Sbjct: 580 ALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILI 638



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 176/381 (46%), Gaps = 8/381 (2%)

Query: 192 KAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           +A+ +LD+MP+ +   P    +  +L  L +     +A  L+  M R+R  P+   F   
Sbjct: 127 RALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 186

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
               C+ G+  +A  +L  M   G  PD V+Y  ++      G + +A  LL EM   GC
Sbjct: 187 ARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGC 246

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
             + N++  ++  LC +  + EA R    M   GC   VVTY  L+ G C++R+ D  Y 
Sbjct: 247 AADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYA 306

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +L  + +  ++    T +   LA  K     E  E+MG     GC PDV  YN+++   C
Sbjct: 307 MLGRVPEVNVVMLN-TVIRGCLAEGKLARATELYEMMGSK---GCPPDVHTYNILMHGLC 362

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           KLG    AV + +EME    +P   ++  ++H F   G   +A     +M  +G     Q
Sbjct: 363 KLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQ 422

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
                 ++ +L +  K++ A  +   + ++GC+ ++  +   I+ L +N  + EA     
Sbjct: 423 --GYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFG 480

Query: 550 DMMDADVMPQPDTFAKLMRGL 570
           ++++  V+    T+  L+  L
Sbjct: 481 NLLEEGVVANGITYNTLIHAL 501



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 172/401 (42%), Gaps = 76/401 (18%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S   Y  L++ L + R+    +A++  + +    ++ T     ++R   +   + +A E+
Sbjct: 284 SVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNT-----VIRGCLAEGKLARATEL 338

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
            + M   GC PD   +  L+  LCK      A ++ DEM E+   P++  +++LL+ +C+
Sbjct: 339 YEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCR 398

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G   +A+ +L QM   GF  +   YN ++    + GK+ +A  L++EM+ +GC P+  +
Sbjct: 399 NGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICT 458

Query: 316 YTVLIQALCRMEKMEEANRAFV-----------------------------------EME 340
           Y  +I  LC  ++M+EA   F                                    EM 
Sbjct: 459 YNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMV 518

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             GC  DVV+Y  LI   CK   +DR   +L+ M+ +GI PN  +Y  ++    K  ++ 
Sbjct: 519 LHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVR 578

Query: 401 ECVELMGEMRKIGCVPDVSNY-----------------------------------NVVI 425
           + +EL  EM   G  PD+  Y                                   N++I
Sbjct: 579 DALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILI 638

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
              CK+  L +A  + ++  +  + P   ++ +MV  F+ Q
Sbjct: 639 SWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNFVRQ 679



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 171/380 (45%), Gaps = 53/380 (13%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ-PNYVHSYDVYRAL 144
            R+P++ + + ++  V+R  L E  + R  +       Y M  SK  P  VH+Y++   L
Sbjct: 309 GRVPEVNVVMLNT--VIRGCLAEGKLARATEL------YEMMGSKGCPPDVHTYNI---L 357

Query: 145 IKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +  L K+ + G+   +++EM ++   P ++T   +  L+  F    M   A  +LD+M  
Sbjct: 358 MHGLCKLGRCGSAVRMLDEMEEKGCAPNIVT---YSTLLHSFCRNGMWDDARAMLDQMSA 414

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
            G   +   +  ++ AL K+  + EA +L  EM+ +  KP +  + +++Y  C   ++ E
Sbjct: 415 KGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDE 474

Query: 262 AKYVLVQMKDAGFEP-----------------------------------DIVVYNNLLS 286
           A+++   + + G                                      D+V YN L+ 
Sbjct: 475 AEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIK 534

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              + G +  +  LL+EM  KG  PN  SY +LI  LC+  K+ +A     EM   G   
Sbjct: 535 ALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTP 594

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+VTY TLI+G CK         +L+ +    + P+ +TY  ++  H K   L++   L+
Sbjct: 595 DIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLL 654

Query: 407 GEMRKIGCVPDVSNYNVVIR 426
            +    G VP+   + ++++
Sbjct: 655 DKAVSGGIVPNERTWGMMVQ 674


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 196/407 (48%), Gaps = 12/407 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARM 189
           PN V     + +LI  L K  +    ++L E+M      P  I   V+  L+R F     
Sbjct: 472 PNAV----TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAI---VYTSLIRSFFKCGR 524

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
            +   ++  EM   GC PD  +    +D + K    ++   LF E+    F P  R ++ 
Sbjct: 525 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 584

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++G  K G   E   +   MK+ G   D   YN ++ G+ + GK+  A++LL+EM+ KG
Sbjct: 585 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 644

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P   +Y  +I  L ++++++EA   F E + +G + +VV Y++LI GF K  +ID  Y
Sbjct: 645 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 704

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            I++ ++Q+G+ PN  T+  ++ A  K EE+ E +     M+ + C P+   Y+++I   
Sbjct: 705 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGL 764

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C++ +  +A   W EM+   L P T ++  M+ G    G ++EA   F      G    P
Sbjct: 765 CRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG--GIP 822

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
              +  A++  L  A K   A  ++     KGC ++     + + +L
Sbjct: 823 DSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDAL 869



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 226/454 (49%), Gaps = 10/454 (2%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           P LE +L   G    P L   V+ R  DA N    Y+ WA KQ   VH  + Y +L+  +
Sbjct: 77  PTLENSLSALGEKPLPELVIGVLKRLKDA-NTAVNYFQWAEKQTEKVHCPEAYNSLLMVM 135

Query: 149 SKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
           ++  +F  +  ++EEM      P   ++ + + L+     +R +++A +++  M K+   
Sbjct: 136 ARNTEFDHLERILEEMSLSGFGP---SSNISIELVANCVKSRKLREAFDIIQTMRKFKFR 192

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           P    +  L+ AL +         LF +M+E  ++ ++  FT+L+  + +EG++  A  +
Sbjct: 193 PAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSL 252

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L +MK    + DIV+YN  +  + + GK+  +++   EM+  G  P+  +YT +I  LC+
Sbjct: 253 LDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCK 312

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
             +++EA   F ++E++        Y T+I G+  + K D  Y +L+    +G +P+ + 
Sbjct: 313 ANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIA 372

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  I+    KK  +EE + +  EM++   VP+V  YN++I + C+ G+L  A+ + ++ME
Sbjct: 373 YNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILIDMLCREGKLNAALEIRDDME 431

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
            A L P   +  +M+        L EAC  F+ M  +  +  P   T  +L++ L +  +
Sbjct: 432 RAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK--VCTPNAVTFSSLIDGLGKCGR 489

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V+ A  ++  ++  G       +T  I S F  G
Sbjct: 490 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCG 523



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/515 (21%), Positives = 215/515 (41%), Gaps = 75/515 (14%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           ++  LI+  ++  +  A  +L++EM+          ++ + +  F  A  V  + +   E
Sbjct: 232 LFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIV-LYNVCIDCFGKAGKVDMSWKFFHE 290

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGK 258
           M  +G  PD+  +  ++  LCK + + EA +LF+++ +  K P    + +++ G+   GK
Sbjct: 291 MKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGK 350

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM--------------------------- 291
             EA  +L + K  G  P ++ YN +L+   +                            
Sbjct: 351 FDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNIL 410

Query: 292 -------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
                  GK+  A E+  +M R G  PN  +  ++I  LC+ +K+EEA   F  M+   C
Sbjct: 411 IDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVC 470

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             + VT+++LI G  K  ++D  Y + + M+  G +P  + Y  ++ +  K    E+  +
Sbjct: 471 TPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHK 530

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +  EM   GC PD++  N  +    K GE ++   ++ E+ A    P   S+ +++HG +
Sbjct: 531 IYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLV 590

Query: 465 GQGCLIEACEYFKEMVGRGLL---------------------------------SAPQYG 491
             G   E  E F  M  +G +                                   P   
Sbjct: 591 KAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVV 650

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  ++++ L +  +++ A  ++    + G +LNV  ++  I      G + EA     ++
Sbjct: 651 TYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 710

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           M   + P   T+  L+  L K      A EI E +
Sbjct: 711 MQKGLTPNVYTWNCLLDALVK------AEEINEAL 739



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 196/432 (45%), Gaps = 7/432 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I       KF   + L+E  +K K  + +   +  ++      R V++A+ + +EM
Sbjct: 338 YNTMIMGYGSAGKFDEAYGLLER-QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM 396

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            K    P+   +  L+D LC+   +  A ++ D+M R    P++     ++   CK  KL
Sbjct: 397 -KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKL 455

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +   M D    P+ V +++L+ G  + G++ DA+ L ++M   G  P A  YT L
Sbjct: 456 EEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSL 515

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I++  +  + E+ ++ + EM  +GC  D+    T +    K+ + ++   +   +   G 
Sbjct: 516 IRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGF 575

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+  +Y  ++    K     E  EL   M++ GCV D   YN VI   CK G++ +A  
Sbjct: 576 IPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQ 635

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
           +  EM+     P   ++  ++ G      L EA   F+E    G+ L+   Y +   L++
Sbjct: 636 LLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS---LID 692

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +  +++ A  +   ++ KG   NVY W   + +L     + EA      M D    P
Sbjct: 693 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPP 752

Query: 559 QPDTFAKLMRGL 570
              T++ L+ GL
Sbjct: 753 NQITYSILINGL 764



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 153/297 (51%), Gaps = 1/297 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+     A +  +  E+   M + GC  D   +  ++D  CK+  V +A +L +EM+
Sbjct: 582 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 641

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P++  + S++ G  K  +L EA  +  + K  G + ++VVY++L+ G+ ++G++ 
Sbjct: 642 VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRID 701

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A+ +++E+ +KG  PN  ++  L+ AL + E++ EA   F  M+   C  + +TY+ LI
Sbjct: 702 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILI 761

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G C+ RK ++ +     M + G+ PN +TY  ++    K   + E   L    +  G +
Sbjct: 762 NGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 821

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           PD ++YN +I       +  +A  ++ E      +  T + VV++       CL +A
Sbjct: 822 PDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 878



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 43/293 (14%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA 185
            +A K+   V     Y A+I    K  K    + L+EEM+ +                  
Sbjct: 602 FYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK------------------ 643

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
                             G  P    +G ++D L K   + EA  LF+E +    K ++ 
Sbjct: 644 ------------------GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 685

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++SL+ G+ K G++ EA  ++ ++   G  P++  +N LL    +  ++ +A    + M
Sbjct: 686 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSM 745

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFV---EMERSGCEADVVTYTTLISGFCKS 361
           +   C PN  +Y++LI  LCR+ K    N+AFV   EM++ G + + +TYTT+ISG  K+
Sbjct: 746 KDLKCPPNQITYSILINGLCRVRKF---NKAFVFWQEMQKLGLKPNTITYTTMISGLAKA 802

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
             I     +       G +P+  +Y  ++       +  +   L  E R  GC
Sbjct: 803 GNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGC 855


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 200/393 (50%), Gaps = 8/393 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ++I +LSK +       ++  M    P   T   +  +M  + S+   +KAI +  +M
Sbjct: 49  YNSIIAALSKAQAMDRAMEVLTVMVM--PNCFT---YNSIMHGYCSSGQSEKAIGIFRKM 103

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G EPD   +  L+D LCKN    EA K+FD M +R  KP +  + +LL+G+  +G L
Sbjct: 104 CSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGAL 163

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           VE   +L  M   G + D  V+N L+  Y +  K+ +   +  +MR++G  PNA +Y  +
Sbjct: 164 VEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTV 223

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC++ ++++A   F +M   G   +VV YT+LI   C   K ++  E++  ++ +GI
Sbjct: 224 IDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGI 283

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN + +  I+ +  K+  + E  +L   +  IG  PDV  Y+ +I   C  G++  A+ 
Sbjct: 284 NPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMK 343

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +   M +  L P + ++  +++G+     + +A   FKEM   G+   P   T   +L+ 
Sbjct: 344 LLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGV--NPDIITYNIILHG 401

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
           L R ++   AK++++ I   G +L +  + I +
Sbjct: 402 LFRTRRTAAAKELYARITESGTQLELSTYNIIL 434



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 190/402 (47%), Gaps = 18/402 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K       +    EM  R+  P  +T    +  + +   A+ + +A+EVL 
Sbjct: 14  YNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSK---AQAMDRAMEVLT 70

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M      P+ F +  ++   C +   ++A  +F +M  +  +P +  + SL+   CK G
Sbjct: 71  VM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNG 126

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA+ +   M   G +PDI  Y  LL GYA  G + +  +LL  M + G   + + + 
Sbjct: 127 KCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFN 186

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI A  + EK++E    F +M + G   + V Y T+I G CK  ++D      + MI +
Sbjct: 187 ILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDK 246

Query: 378 GILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           G+ PN + Y   +H +  ++K E+ EE   L+ E+   G  P++  +N ++   CK G +
Sbjct: 247 GLTPNVVVYTSLIHALCTYDKWEKAEE---LIFEILDQGINPNIVFFNTILDSLCKEGRV 303

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            E+  +++ +    ++P   ++  ++ G+   G +  A +    MV  GL   P   T  
Sbjct: 304 IESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGL--KPDSVTYS 361

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            L+N   +  ++E A  ++  + + G   ++  + I +H LF
Sbjct: 362 TLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLF 403



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 160/332 (48%), Gaps = 6/332 (1%)

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           R  P +  + +++ G  KEG + +A     +M D    PD V YN++++  ++   M  A
Sbjct: 6   RCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRA 65

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E+L  M      PN  +Y  ++   C   + E+A   F +M   G E DVVTY +L+  
Sbjct: 66  MEVLTVMVM----PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDY 121

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK+ K     +I DSM++RG+ P+  TY  ++  +  K  L E  +L+  M + G   D
Sbjct: 122 LCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLD 181

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              +N++I    K  ++ E V V+++M    L+P   ++  ++ G    G L +A   F+
Sbjct: 182 HHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFE 241

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           +M+ +GL   P      +L+++L    K E A+++   I+ +G   N+  +   + SL  
Sbjct: 242 QMIDKGL--TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCK 299

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            G V E+      +    V P   T++ L+ G
Sbjct: 300 EGRVIESKKLFDLLGHIGVNPDVITYSTLIDG 331



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 130/263 (49%), Gaps = 6/263 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           V+  LI + +K  K   V  +  +MR++   P  +     +  + +      +  A+   
Sbjct: 184 VFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGR---LDDAMLNF 240

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPSLRHFTSLLYGWCKE 256
           ++M   G  P+  V+  L+ ALC     ++A +L F+ + +   P++  F ++L   CKE
Sbjct: 241 EQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKE 300

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+++E+K +   +   G  PD++ Y+ L+ GY   GKM  A +LL  M   G  P++ +Y
Sbjct: 301 GRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTY 360

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI   C++ +ME+A   F EME +G   D++TY  ++ G  ++R+     E+   + +
Sbjct: 361 STLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITE 420

Query: 377 RGILPNQLTYLHIMLAHEKKEEL 399
            G      TY  I++   K   L
Sbjct: 421 SGTQLELSTYNIILMDFAKTNSL 443



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 6/289 (2%)

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  SY  +I  L +   +++A   + EM       D VTY ++I+   K++ +DR  
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM 66

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+L  M    ++PN  TY  IM  +    + E+ + +  +M   G  PDV  YN ++   
Sbjct: 67  EVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G+  EA  +++ M    L P   ++  ++HG+  +G L+E  +    MV  G+    
Sbjct: 123 CKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM--QL 180

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            +     L+ +  + +KV+    V+S +  +G   N   +   I  L   G + +A    
Sbjct: 181 DHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNF 240

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
             M+D  + P    +  L+  L      + A E+  ++        I F
Sbjct: 241 EQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVF 289


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 245/504 (48%), Gaps = 13/504 (2%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG-NLGYRYYMWASKQPN 133
           E+  RILK F    P  E AL+   + +   L   V+    D G N+  +++ WA+K+ N
Sbjct: 62  ERFIRILKIFKWG-PDAERALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRN 118

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           Y H    Y ALI  L  + ++G +W +++EM +    ++T      ++R   +A+M+ KA
Sbjct: 119 YQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKA 178

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLY 251
           I +  ++    C+P    +  ++  L      ++  +L++EM       P    +++L+ 
Sbjct: 179 ITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALIS 238

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +CK G+   A  +L +MK+ G +P   +Y  ++S + ++  +  A  L +EMR   C P
Sbjct: 239 AFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRP 298

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT LI+ L +  +++EA   + EM+R  C+ D V    +I+   K+ ++D   ++ 
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLF 358

Query: 372 DSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           + M     +PN +TY  I+ A  E K  + E       M+  G  P    Y+++I   CK
Sbjct: 359 EEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCK 418

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMVGR-GLLSAP 488
              +++A+ +  EM+     P   ++  ++   LG+    + ACE F+E+    G  SA 
Sbjct: 419 TNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELKENCGSSSAR 477

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            Y     ++  L +A +++ A +++  +   GC  NVYA+   +  L     + EA +  
Sbjct: 478 VYAV---MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTM 534

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
             M +   +P  +++  ++ GL K
Sbjct: 535 RKMQEHGCLPDINSYNIILNGLAK 558



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 162/349 (46%), Gaps = 7/349 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I    K+       +L EEMR    +P + T   +  L+R    A  + +A    
Sbjct: 267 IYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFT---YTELIRGLGKAGRIDEAYHFY 323

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYG-WCK 255
            EM +  C+PD  V   +++ L K   + +  KLF+EM      P++  + +++   +  
Sbjct: 324 HEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFES 383

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + ++ E      +MK +G  P    Y+ L+ G+ +  ++  A  LL+EM  KG  P   +
Sbjct: 384 KSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAA 443

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI AL + ++ + A   F E++ +   +    Y  +I    K+ ++D    + D M 
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMS 503

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G  PN   Y  +M    +   L+E +  M +M++ GC+PD+++YN+++    K G   
Sbjct: 504 KLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            A+ +   M+ +++ P   S+  ++      G   EA E  KEM   G 
Sbjct: 564 RAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGF 612



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 145/332 (43%), Gaps = 14/332 (4%)

Query: 110 VINRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +I   G AG +   Y+ +   Q     P+ V    V   +I  L K  +      L EEM
Sbjct: 306 LIRGLGKAGRIDEAYHFYHEMQREDCKPDTV----VMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 165 RKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
                 P ++T     I+   F S   V +     + M   G  P  F +  L+D  CK 
Sbjct: 362 GVSHCIPNVVTYNT--IIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKT 419

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           + +++A  L +EM E+ F P    + SL+    K  +   A  +  ++K+        VY
Sbjct: 420 NRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVY 479

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             ++    + G++ DA  L  EM + GC PN  +Y  L+  L R   ++EA     +M+ 
Sbjct: 480 AVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQE 539

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  D+ +Y  +++G  K+    R  E+L +M    I P+ ++Y  ++ A       EE
Sbjct: 540 HGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEE 599

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
             ELM EM  +G   D+  Y+ ++    K+ +
Sbjct: 600 AAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 194/400 (48%), Gaps = 8/400 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  L+  L +      + +L+ EMR E+      +++  ++      R   +A+ VL +
Sbjct: 331 TYGTLMSWLGRKGDLEKIASLLSEMR-ERRLPPNVQIYNSVIDALCKCRSASQALVVLKQ 389

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M   GC+PD   F  L+  LC+   V+EA +L  E  R    P+L  +TSL++G+C  G+
Sbjct: 390 MFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGE 449

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           ++ A  +LV+M + G  PD+V +  L+ G    G++++A  + ++M  +   P+AN Y V
Sbjct: 450 VIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNV 509

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC+ + +  A     EM       D   YTTLI GF ++  +D   +I + M Q+G
Sbjct: 510 LISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKG 569

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P+ + Y  ++  + +   + E VE M  MRK+G +PD   Y  +I    K G +  A+
Sbjct: 570 IHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGAL 629

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           ++  +M      P   ++  +++G+   G    A   F  M  +GL   P   T   L+ 
Sbjct: 630 SLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLF--PNVITYTILIG 687

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           SL +  KV  A   +  ++   C  N Y     +HSL + 
Sbjct: 688 SLFKKDKVVRAAMYFEYMLLNQCSPNDYT----LHSLVTG 723



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 38/417 (9%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V + I +L EM   G  P    +G L+  L +   +++ A L  EMRER   P+++ + S
Sbjct: 310 VGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNS 369

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CK     +A  VL QM   G +PD + ++ L+SG  Q G++ +A  LL+E  R  
Sbjct: 370 VIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWE 429

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT------------------ 350
            +PN +SYT LI   C   ++  A+   VEM   G   DVVT                  
Sbjct: 430 LNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEAL 489

Query: 351 -----------------YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
                            Y  LISG CK + +     +++ M+++ + P++  Y  ++   
Sbjct: 490 LVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGF 549

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            + E L+E  ++   M + G  PDV  YN +I+  C+ G + EAV   + M      P  
Sbjct: 550 IRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDE 609

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  ++ G+  QG +  A     +M+ R     P      +L+N   +    + A+ ++
Sbjct: 610 FTYTTLIGGYAKQGNISGALSLLCDMMKR--RCQPNVVAYSSLINGYCKLGDTDAAECLF 667

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             + ++G   NV  +TI I SLF    V  A  Y   M+     P   T   L+ GL
Sbjct: 668 GSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGL 724



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 163/351 (46%), Gaps = 21/351 (5%)

Query: 136 HSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           H+ DV  + ALI  L    +      + E+M   +  L    ++ +L+      +M+  A
Sbjct: 465 HTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQ-LLPDANIYNVLISGLCKKKMLPAA 523

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
             +++EM +    PD++V+  L+D   +N S+ EA K+F+ M ++   P +  + +++ G
Sbjct: 524 RNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKG 583

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +C+ G + EA   +  M+  G  PD   Y  L+ GYA+ G ++ A  LL +M ++ C PN
Sbjct: 584 YCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPN 643

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y+ LI   C++   + A   F  ME  G   +V+TYT LI    K  K+ R     +
Sbjct: 644 VVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFE 703

Query: 373 SMIQRGILPNQLTYLHIM-------LAHEKKEELEECVELMGEMRKIG---------CVP 416
            M+     PN  T LH +       +A          V L G+   +          C P
Sbjct: 704 YMLLNQCSPNDYT-LHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDP 762

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
             S YN +I   C    L EA+++ N+M      P + +F+ +++GF   G
Sbjct: 763 RNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVG 813



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 168/384 (43%), Gaps = 3/384 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLY 251
           A ++ DEM       D++    ++  LC    V++  KL +        P+   +  L+ 
Sbjct: 243 ARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLID 302

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+C+ G +     +L +M+  G  P +V Y  L+S   + G +     LL EMR +   P
Sbjct: 303 GYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPP 362

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N   Y  +I ALC+     +A     +M   GC+ D +T++TLISG C+  ++     +L
Sbjct: 363 NVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLL 422

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
               +  + PN  +Y  ++     + E+     L+ EM + G  PDV  +  +I      
Sbjct: 423 RETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVA 482

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G++ EA+ V  +M A  L P  + + V++ G   +  L  A    +EM+ + +   P   
Sbjct: 483 GQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNV--HPDKY 540

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               L++  +R + ++ A+ ++  +  KG   +V  +   I      G + EA      M
Sbjct: 541 VYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTM 600

Query: 552 MDADVMPQPDTFAKLMRGLKKLYN 575
                +P   T+  L+ G  K  N
Sbjct: 601 RKVGRIPDEFTYTTLIGGYAKQGN 624



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 4/278 (1%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVTYTTL 354
           DA +L  EM  +    +  S  V+++ LC +E + E     +E    +GC  + V Y  L
Sbjct: 242 DARKLYDEMLAEESGADDYSTCVMVRGLC-LEGLVEKGLKLIEARWGAGCVPNAVFYNVL 300

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I G+C+   + R   +L  M  +G+LP  +TY  +M    +K +LE+   L+ EMR+   
Sbjct: 301 IDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRL 360

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+V  YN VI   CK     +A+ V  +M A    P   +F  ++ G   +G + EA  
Sbjct: 361 PPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAER 420

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +E     L   P   +  +L++      +V +A ++   ++ +G   +V  +   IH 
Sbjct: 421 LLRETTRWEL--NPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHG 478

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           L   G V EA      M    ++P  + +  L+ GL K
Sbjct: 479 LVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCK 516



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 134/335 (40%), Gaps = 84/335 (25%)

Query: 140 VYRALI------KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           VY  LI      +SL + RK   ++  ME+ +   P ++    +  +++ +    M+ +A
Sbjct: 541 VYTTLIDGFIRNESLDEARK---IFEFMEQ-KGIHPDVVG---YNAMIKGYCQFGMMNEA 593

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYG 252
           +E +  M K G  PDEF +  L+    K  ++  A  L  D M+ R +P++  ++SL+ G
Sbjct: 594 VECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLING 653

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVY------------------------------- 281
           +CK G    A+ +   M+  G  P+++ Y                               
Sbjct: 654 YCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPN 713

Query: 282 ----NNLLSGYAQM------------------GKMTDAFELLKEMRRKGCDPNANSYTVL 319
               ++L++G                      G + D F  L   R   CDP  ++Y  +
Sbjct: 714 DYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDR---CDPRNSAYNAI 770

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I +LC    + EA     +M   G + D  T+ +L+ GFC   K         S   R I
Sbjct: 771 IFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGK---------SREWRTI 821

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           LPN+     + +A   K   ++ V     ++ +GC
Sbjct: 822 LPNEFQRDELEVASRYKILFDQYV-----VKSVGC 851


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 209/449 (46%), Gaps = 44/449 (9%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L+   +   M    ++    M   G +P+  ++  +++ALCK+ +V +A  +  ++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E    P    +TS++ G C++  L  A  V  QM   G EP+ V Y+ L++G    G++ 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +AF+L++EM   G  P A++ T  I ALC M   E+A R FV+M+  GCE +V TYT LI
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKI 412
           SG C S  +     +   M + G+ PN +TY   ++I++ + + +     + LMG   + 
Sbjct: 363 SGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMG---RN 419

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG----- 467
           GC P++  YN +I+  C LG+ K+A+ V N M     S    ++  ++ G+   G     
Sbjct: 420 GCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 479

Query: 468 --------------------------CLIEACE----YFKEMVGRGLLSAPQYGTLKALL 497
                                     C I   E     F EMV  GL   P   T  AL+
Sbjct: 480 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL--CPNEVTYTALI 537

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +   + +K++ A  +   +   GC  NV  + + IH L    +   A   C  M++  + 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           P   T+  ++ GL K  +  +A E+  K+
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKM 626



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 209/481 (43%), Gaps = 28/481 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ALI  L           L   M ++   P  +T    + ++      R +K A  VL
Sbjct: 357 TYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINIL---VENRRIKYAFVVL 413

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           + M + GC P+   +  ++   C     K+A  + + M +R    +L  + +++ G+C  
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 473

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G    A  +L  M+D G +PD   Y  L+ G+ ++ KM  AF L  EM   G  PN  +Y
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI   C+ EK++ A      M+RSGC  +V TY  LI G  K        E+   MI+
Sbjct: 534 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI PN +TY  ++    K       +E+  +M + GC+P++  Y+ +IR   + G+++E
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTL-K 494
           A N++ E+E   L P   ++V M+  ++  G +  A  +   M+  G       YG L K
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 495 ALLNSLLRAQKVEMA----------------KDVWSCIVTKGCELN----VYAWTIWIHS 534
            L N  L A +   A                +D  S +  K  EL+    V      + +
Sbjct: 714 GLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSN 773

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L + G   EA      M+   + P  + +  L+  L ++ N  +A  + + +     E  
Sbjct: 774 LSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVH 833

Query: 595 I 595
           +
Sbjct: 834 L 834



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 204/441 (46%), Gaps = 36/441 (8%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     Y  +IK    +        +M  M  R     L+T   +  +++ +  + 
Sbjct: 422 SPNIV----TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT---YNTIIKGYCDSG 474

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
               A+ +LD M   GC+PDE+ +  L+   CK S ++ A  LF+EM  +   P+   +T
Sbjct: 475 NTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYT 534

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+CK+ KL  A  +L  MK +G  P++  YN L+ G  +    + A EL K M  +
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 594

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +YT +I  LC+      A   F +M   GC  +++TY++LI    +  K++  
Sbjct: 595 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI-- 425
             +   + + G++P+++TY+ ++ A+    ++E     +G M K GC P +  Y V+I  
Sbjct: 655 ENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714

Query: 426 ----------RLA--------CKLGELKEAVNVWNEMEA--ASLSPGTDSFV--VMVHGF 463
                     RLA        C  G      +  + M A  A L PG    V   +V   
Sbjct: 715 LKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNL 774

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G   EA E    M+ +GL   P      +LL SLLR + V++A  V+  + T+GCE+
Sbjct: 775 STAGRWFEANELLGSMISQGL--CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 524 NVYAWTIWIHSLFSNGHVKEA 544
           ++  +   I +L      KEA
Sbjct: 833 HLNGYKELICALCQLHRRKEA 853



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 220/503 (43%), Gaps = 55/503 (10%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           R G+T  V++R        Y   +    QPN +    +Y A+I +L K         +M+
Sbjct: 192 RLGMTAAVMDR--------YHRMLSEGVQPNLL----IYNAVINALCKDGNVADAETIMK 239

Query: 163 EMRKEKPQLITTEVFVILMRRFASARM--VKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           ++ + +   ++ + F          R   +  A++V ++M K GCEP+   +  L++ LC
Sbjct: 240 KVFESE---MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 221 KNSSVKEAAKLFDEM------------------------------------RERFKPSLR 244
            +  V EA  L  EM                                     +  +P++ 
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +T+L+ G C  G L  A  +  +M   G  P+ V YN L++   +  ++  AF +L  M
Sbjct: 357 TYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            R GC PN  +Y  +I+  C +   ++A      M + G  A++VTY T+I G+C S   
Sbjct: 417 GRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 476

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
                ILD M   G  P++ +Y  ++    K  ++E    L  EM   G  P+   Y  +
Sbjct: 477 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTAL 536

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK  +L  A ++   M+ +   P   ++ V++HG   Q     A E  K M+  G+
Sbjct: 537 IDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T  A+++ L +     +A ++++ ++ +GC  N+  ++  I +L   G V+EA
Sbjct: 597 F--PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654

Query: 545 CSYCLDMMDADVMPQPDTFAKLM 567
            +   ++    ++P   T+ K++
Sbjct: 655 ENLFAELERHGLIPDEITYVKMI 677



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 153/363 (42%), Gaps = 34/363 (9%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y ALI    K  K     +L+E M++   +P +   + + +L+        
Sbjct: 528 PNEV----TYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV---QTYNVLIHGLTKQNN 580

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
              A E+   M + G  P+   +  ++D LCKN S   A ++F++M E+   P+L  ++S
Sbjct: 581 FSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSS 640

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+    +EGK+ EA+ +  +++  G  PD + Y  ++  Y   GK+  AF  L  M + G
Sbjct: 641 LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 700

Query: 309 CDPNANSYTVLIQAL--------------------CRMEKMEEANRAFVEMERSGCEAD- 347
           C P   +Y VLI+ L                    C          A   M     E D 
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 348 ---VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
              V     L+S    + +     E+L SMI +G+ P+Q  Y  ++ +  +   ++  + 
Sbjct: 761 GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMG 820

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   GC   ++ Y  +I   C+L   KEA   +  M   + +P      V++ G L
Sbjct: 821 VFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLL 880

Query: 465 GQG 467
             G
Sbjct: 881 RDG 883



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 133/322 (41%), Gaps = 2/322 (0%)

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L  +  +G    +  Y+ LL   +++G      +    M  +G  PN   Y  +I ALC+
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
              + +A     ++  S    D  TYT++I G C+   +D   ++ + M + G  PN +T
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++        + E  +L+ EM   G +P        I   C +G  ++A  ++ +M+
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
                P   ++  ++ G    G L  A   F  M   G+   P   T  AL+N L+  ++
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRR 405

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++ A  V + +   GC  N+  +   I      G  K+A     +M+         T+  
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 566 LMRGLKKLYNRQIAAEITEKVR 587
           +++G     N   A  I + +R
Sbjct: 466 IIKGYCDSGNTTSALRILDLMR 487



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 2/276 (0%)

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           M      L  + + G      +Y+ L+  L R+         +  M   G + +++ Y  
Sbjct: 161 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 220

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I+  CK   +     I+  + +  + P+  TY  ++L H +K +L+  +++  +M K G
Sbjct: 221 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 280

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C P+   Y+ +I   C  G + EA ++  EM    + P   +    +      GC  +A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             F +M  +G    P   T  AL++ L  +  +++A  ++  +   G   N   +   I+
Sbjct: 341 RLFVDMKNKG--CEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALIN 398

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            L  N  +K A      M      P   T+ ++++G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 121/286 (42%), Gaps = 32/286 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y +LI++L +  K      L  E+  E+  LI  E+ +V ++  +  +  V+ A   L 
Sbjct: 637 TYSSLIRALGQEGKVEEAENLFAEL--ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 199 EMPKYGCEPDEFVFGCLLDALCKN------------------------SSVKEAAKLFDE 234
            M K GC+P  + +G L+  L KN                        ++ ++A  +   
Sbjct: 695 RMIKAGCQPTLWTYGVLIKGL-KNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSA 753

Query: 235 MRERFKP--SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
                 P  S++   +L+      G+  EA  +L  M   G  PD   YN+LL    ++ 
Sbjct: 754 KLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVR 813

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
            +  A  + K M  +GC+ + N Y  LI ALC++ + +EA   F  M       D V   
Sbjct: 814 NVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQA 873

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
            LI G  +    D C E L  M  R  +P+   +++ +LA E  ++
Sbjct: 874 VLIDGLLRDGYKDLCMEFLHIMETRRYMPS--FHIYTILAREASKK 917



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 40/256 (15%)

Query: 359 CKSRK-IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           C S++ + R    LD + Q G+      Y  +++   +       ++    M   G  P+
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN VI   CK G + +A  +  ++  + +SP T ++  M+ G   +  L  A + F 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA---------------------------- 509
           +M   G    P   T   L+N L  + +V  A                            
Sbjct: 275 QMAKEG--CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 510 ----KDVWSCIV---TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
               +D W   V    KGCE NVY +T  I  L  +G +K A      M    V P   T
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVT 392

Query: 563 FAKLMRGLKKLYNRQI 578
           +  L+  L +  NR+I
Sbjct: 393 YNALINILVE--NRRI 406


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 221/451 (49%), Gaps = 8/451 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI  L    +      L++ M +   KP LIT    V           V  A+ ++D
Sbjct: 145 FSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALV---NGLCLNGKVSDAVLLID 201

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G +P+E  +G +L  +CK+     A +L  +M ER  K     ++ ++ G CK+G
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  +  +M+  GF+ DI++Y  L+ G+   G+  D  +LL++M ++   P+  +++
Sbjct: 262 SLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    +  K+ EA     EM + G   D VTYT+LI GFCK  ++D+   +LD M+ +
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  T+  ++  + K   +++ +EL  +M   G V D   YN +I+  C+LG+L+ A
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA 441

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++ EM +  + P   S+ +++ G    G   +A E F+++    +      G    ++
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM--ELDIGIYNIII 499

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + +  A KV+ A D++  +  KG + +V  + I I  L   G + EA      M +    
Sbjct: 500 HGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHS 559

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           P   T+  L+R      +   +A++ E++++
Sbjct: 560 PNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 188/425 (44%), Gaps = 36/425 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVL 197
           +Y  LI+      ++     L+ +M K K   IT +V  F  L+  F     +++A E+ 
Sbjct: 284 IYTTLIRGFCYAGRWDDGAKLLRDMIKRK---ITPDVVAFSALIDCFVKEGKLREAEELH 340

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM + G  PD   +  L+D  CK + + +A  + D M  +   P++R F  L+ G+CK 
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + +   +  +M   G   D V YN L+ G+ ++GK+  A EL +EM  +   P+  SY
Sbjct: 401 NLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSY 460

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC   + E+A   F ++E+S  E D+  Y  +I G C + K+D  +++  S+  
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE--- 433
           +G+ P+  TY  ++    KK  L E   L  +M + G  P+   YN++IR    LGE   
Sbjct: 521 KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIR--AHLGEGDA 578

Query: 434 ---------------------LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ--GCLI 470
                                L+ A++    M  A   P   +F  ++  F  +    + 
Sbjct: 579 TKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVY 638

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A   FK M   G    P   T   ++  LL    +     V   +  +GC+ N    + 
Sbjct: 639 DAPTLFKNMKAMGY--KPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKST 696

Query: 531 WIHSL 535
           +I  L
Sbjct: 697 FISGL 701



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 197/440 (44%), Gaps = 10/440 (2%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD---EMPKYGCEPDEFVFGCLL 216
           L +EM + +P+       +   R F+     K+   VLD   +M   G   + +    ++
Sbjct: 59  LFQEMTRSRPR----PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114

Query: 217 DALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           +  C+   +  A     ++ +  ++P    F++L+ G C EG++ EA  ++ +M + G +
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P ++  N L++G    GK++DA  L+  M   G  PN  +Y  +++ +C+  +   A   
Sbjct: 175 PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMEL 234

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             +ME    + D V Y+ +I G CK   +D  + + + M  +G   + + Y  ++     
Sbjct: 235 LRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCY 294

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
               ++  +L+ +M K    PDV  ++ +I    K G+L+EA  +  EM    +SP T +
Sbjct: 295 AGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVT 354

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ GF  +  L +A      MV +G    P   T   L+N   +A  ++   +++  
Sbjct: 355 YTSLIDGFCKENQLDKANHMLDLMVSKG--CGPNIRTFNILINGYCKANLIDDGLELFRK 412

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +  +G   +   +   I      G ++ A     +M+   V P   ++  L+ GL     
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472

Query: 576 RQIAAEITEKVRKMAAERQI 595
            + A EI EK+ K   E  I
Sbjct: 473 PEKALEIFEKIEKSKMELDI 492



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 150/353 (42%), Gaps = 30/353 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K  +      +++ M  +   P + T   F IL+  +  A ++   +E+  
Sbjct: 355 YTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRT---FNILINGYCKANLIDDGLELFR 411

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M   G   D   +  L+   C+   ++ A +LF EM   R +P +  +  LL G C  G
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNG 471

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A  +  +++ +  E DI +YN ++ G     K+ DA++L   +  KG  P+  +Y 
Sbjct: 472 EPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYN 531

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF------CKSRK----IDRC 367
           ++I  LC+   + EA+  F +ME  G   +  TY  LI          KS K    I RC
Sbjct: 532 IMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRC 591

Query: 368 YEILDS------------MIQRGILPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIG 413
              +D+            M++ G  P+  T+  ++     E+   + +   L   M+ +G
Sbjct: 592 GFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMG 651

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             P+V  YN VI+       + +   V ++M      P   +    + G   Q
Sbjct: 652 YKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQ 704



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 145/310 (46%), Gaps = 21/310 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI+   ++ K      L +EM  R+ +P +++   + IL+         +KA+E+ +
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS---YKILLDGLCDNGEPEKALEIFE 481

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++ K   E D  ++  ++  +C  S V +A  LF  +  +  KP ++ +  ++ G CK+G
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA  +  +M++ G  P+   YN L+  +   G  T + +L++E++R G   +A++  
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLR 601

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC--KSRKIDRCYEILDSMI 375
             +  L RM K             +G E DV T+TTL+  FC  ++  +     +  +M 
Sbjct: 602 FALSTLARMLK-------------AGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMK 648

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             G  PN +TY  ++        + +   ++ +M + GC P+    +  I   CK     
Sbjct: 649 AMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHG 708

Query: 436 EAVNVWNEME 445
            A+ +  +ME
Sbjct: 709 SAILLLRKME 718



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 158/408 (38%), Gaps = 108/408 (26%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRR-----------------------------------KG 308
           L SG   + K  DA +L +EM R                                   KG
Sbjct: 44  LRSGIVDI-KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKG 102

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK----- 363
              N  + +++I   CR  K+  A  A  ++ + G E D VT++TLI+G C   +     
Sbjct: 103 IAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEAL 162

Query: 364 --IDRCYE----------------------------ILDSMIQRGILPNQLTYLHIMLAH 393
             +DR  E                            ++D M++ G  PN++TY  ++   
Sbjct: 163 ELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVM 222

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS----- 448
            K  +    +EL+ +M +     D   Y+++I   CK G L  A N++NEME        
Sbjct: 223 CKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282

Query: 449 ------------------------------LSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
                                         ++P   +F  ++  F+ +G L EA E  KE
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ RG+  +P   T  +L++   +  +++ A  +   +V+KGC  N+  + I I+     
Sbjct: 343 MIQRGI--SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             + +       M    V+    T+  L++G  +L   ++A E+ +++
Sbjct: 401 NLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 105/270 (38%), Gaps = 63/270 (23%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y+ L+  L    +      + E++ K K +L    ++ I++    +A  V  A ++   +
Sbjct: 460 YKILLDGLCDNGEPEKALEIFEKIEKSKMEL-DIGIYNIIIHGMCNASKVDDAWDLFCSL 518

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEA-------------------------------- 228
           P  G +PD   +  ++  LCK  S+ EA                                
Sbjct: 519 PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDA 578

Query: 229 ---AKLFDEMRE----------RF-------------KPSLRHFTSLLYGWCKE--GKLV 260
              AKL +E++           RF             +P +  FT+LL  +C E    + 
Sbjct: 579 TKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVY 638

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           +A  +   MK  G++P++V YN ++ G      ++    +L +M  +GC PNA + +  I
Sbjct: 639 DAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFI 698

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVT 350
             LC+ +    A     +ME      DV T
Sbjct: 699 SGLCKQDLHGSAILLLRKMEND--NEDVTT 726


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 220/477 (46%), Gaps = 53/477 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK---PQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  ++  L K R     + +++EMR  K   P L+T   +  ++  F     + +A E+L
Sbjct: 12  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVT---YSTVINGFCKQGEMDRACEIL 68

Query: 198 DEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
            EM  + G  PD   +  ++D LC++  +  A ++  EM+ +  +P    F++L+ GWC 
Sbjct: 69  REMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCN 128

Query: 256 EGKLVEA----------------------------------KYVLVQ----MKDAGFEPD 277
             K+ EA                                   Y L Q     +D  ++PD
Sbjct: 129 ARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPD 188

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V Y  L+ G+ + G +  A ++L  M  + C PN  +Y+ L+  LC+   +++A   F 
Sbjct: 189 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR 248

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
            M   GC  +VVTYTTLI G C + K+D    ++D M       + ++Y  ++  + +  
Sbjct: 249 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLG 308

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME-AASLSPGTDSF 456
            +EE  +L  EM    C+PD   Y  ++R  C    L+EA  +   M+ AA + P   ++
Sbjct: 309 RIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTY 368

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            ++V G+      +EA E+ +EM+ R +  AP   T  +L++ L +A +V  A +V   +
Sbjct: 369 SIVVAGYSRAKRFVEAAEFIQEMIARNV--APNAVTYSSLIDGLCKAGRVNHAMEVLKNV 426

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
                  +V  +TI I  L      +EA +   +M++  V P   TF  ++  L +L
Sbjct: 427 DKP----DVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRL 479



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 213/457 (46%), Gaps = 16/457 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +++  L +  K      ++ EM+ +  +P   T   F  L+  + +AR V +A+++  
Sbjct: 84  YTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFT---FSALITGWCNARKVDEALKLYK 140

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----FKPSLRHFTSLLYGWC 254
           E+    C  D      L+  LC+   + EA +LF EM  R    +KP +  +T+L+ G+C
Sbjct: 141 EILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFC 200

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K G L +A  +L  M+     P++V Y++LL G  + G +  A +L + M  KGC PN  
Sbjct: 201 KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVV 260

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT LI  LC   K++ A     EM  + C AD V+Y  L+ G+C+  +I+   ++   M
Sbjct: 261 TYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEM 320

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACKLGE 433
             +  LP+++TY  ++        LEE   L+  M+   G  PDV  Y++V+    +   
Sbjct: 321 AAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKR 380

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             EA     EM A +++P   ++  ++ G    G +  A E  K       +  P   T 
Sbjct: 381 FVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKN------VDKPDVVTY 434

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             ++  L    + E A  +   +V K  E +V  +   I +L   G + EA    + M  
Sbjct: 435 TIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA 494

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
             + P   T+  L+ G  +    +IA E+ E +R+ A
Sbjct: 495 HGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKA 531



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 203/425 (47%), Gaps = 46/425 (10%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKY 264
           P+E  +  +++ LCK     +A ++  EMR+     P L  +++++ G+CK+G++  A  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 265 VLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           +L +M  +D G  PD+V Y +++ G  + GKM  A E+++EM+ KG +P+  +++ LI  
Sbjct: 67  ILREMVTRD-GMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITG 125

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR---GI 379
            C   K++EA + + E+  S C  D V+ + LI+G C+ R+I   YE+   M  R     
Sbjct: 126 WCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAW 185

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    K   LE+ ++++G M    CVP+V  Y+ ++   CK G+L +A++
Sbjct: 186 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 245

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQ--------------------------------- 466
           ++  M +    P   ++  ++HG                                     
Sbjct: 246 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYC 305

Query: 467 --GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT-KGCEL 523
             G + EA + FKEM  +  L  P   T   L+     A ++E A+ +   + T  G + 
Sbjct: 306 RLGRIEEAKQLFKEMAAKSCL--PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 363

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           +V  ++I +          EA  +  +M+  +V P   T++ L+ GL K      A E+ 
Sbjct: 364 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVL 423

Query: 584 EKVRK 588
           + V K
Sbjct: 424 KNVDK 428



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 167/341 (48%), Gaps = 7/341 (2%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGK 293
           MRE   P+ R +  ++ G CK     +A  VL +M+D     PD+V Y+ +++G+ + G+
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 294 MTDAFELLKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           M  A E+L+EM  R G  P+  +YT ++  LCR  KM+ A     EM+  G E D  T++
Sbjct: 61  MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFS 120

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG--EMR 410
            LI+G+C +RK+D   ++   ++      + ++   ++    ++  + E  EL    EMR
Sbjct: 121 ALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMR 180

Query: 411 KIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           + G   PDV  Y  +I   CK G L++A+ +   ME     P   ++  ++HG    G L
Sbjct: 181 EDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDL 240

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A + F+ M  +G +  P   T   L++ L  A KV+ A+ +   +    C  +  ++ 
Sbjct: 241 DQALDLFRRMTSKGCV--PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYN 298

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +      G ++EA     +M     +P   T+  L+RG 
Sbjct: 299 ALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGF 339



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 155/321 (48%), Gaps = 20/321 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y AL+    ++ +      L +EM  +   P  IT   +  L+R F +A  +++A  +L+
Sbjct: 297 YNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRIT---YTCLVRGFCNASRLEEARFLLE 353

Query: 199 EM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            M    G +PD   +  ++    +     EAA+   EM  R   P+   ++SL+ G CK 
Sbjct: 354 NMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA 413

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++  A  VL  +     +PD+V Y  ++ G     +  +A  LL+EM  K  +P+  ++
Sbjct: 414 GRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTF 469

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             +I ALCR+  M+EA +  V M   G E  +VTYTTL+ GF ++ +++  YE+ + M +
Sbjct: 470 NSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRR 529

Query: 377 RG--------ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +         ++P Q  +  ++    K  E+++ + ++ E+R   C P   +   ++   
Sbjct: 530 KAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGL 588

Query: 429 CKLGELKEAVNVWNEMEAASL 449
            + G  +EA  + N +    L
Sbjct: 589 LRAGRTEEAGKLINSISKVGL 609


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 196/407 (48%), Gaps = 12/407 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARM 189
           PN V     + +LI  L K  +    ++L E+M      P  I   V+  L+R F     
Sbjct: 227 PNAV----TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAI---VYTSLIRSFFKCGR 279

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
            +   ++  EM   GC PD  +    +D + K    ++   LF E+    F P  R ++ 
Sbjct: 280 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 339

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++G  K G   E   +   MK+ G   D   YN ++ G+ + GK+  A++LL+EM+ KG
Sbjct: 340 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 399

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P   +Y  +I  L ++++++EA   F E + +G + +VV Y++LI GF K  +ID  Y
Sbjct: 400 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 459

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            I++ ++Q+G+ PN  T+  ++ A  K EE+ E +     M+ + C P+   Y+++I   
Sbjct: 460 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGL 519

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C++ +  +A   W EM+   L P T ++  M+ G    G ++EA   F      G    P
Sbjct: 520 CRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG--GIP 577

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
              +  A++  L  A K   A  ++     KGC ++     + + +L
Sbjct: 578 DSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDAL 624



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 196/432 (45%), Gaps = 7/432 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I       KF   + L+E  +K K  + +   +  ++      R V++A+ + +EM
Sbjct: 93  YNTMIMGYGSAGKFDEAYGLLER-QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM 151

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            K    P+   +  L+D LC+   +  A ++ D+M R    P++     ++   CK  KL
Sbjct: 152 -KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKL 210

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +   M D    P+ V +++L+ G  + G++ DA+ L ++M   G  P A  YT L
Sbjct: 211 EEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSL 270

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I++  +  + E+ ++ + EM  +GC  D+    T +    K+ + ++   +   +   G 
Sbjct: 271 IRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGF 330

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+  +Y  ++    K     E  EL   M++ GCV D   YN VI   CK G++ +A  
Sbjct: 331 IPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQ 390

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
           +  EM+     P   ++  ++ G      L EA   F+E    G+ L+   Y +   L++
Sbjct: 391 LLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS---LID 447

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +  +++ A  +   ++ KG   NVY W   + +L     + EA      M D    P
Sbjct: 448 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPP 507

Query: 559 QPDTFAKLMRGL 570
              T++ L+ GL
Sbjct: 508 NQITYSILINGL 519



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 153/297 (51%), Gaps = 1/297 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+     A +  +  E+   M + GC  D   +  ++D  CK+  V +A +L +EM+
Sbjct: 337 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 396

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P++  + S++ G  K  +L EA  +  + K  G + ++VVY++L+ G+ ++G++ 
Sbjct: 397 VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRID 456

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A+ +++E+ +KG  PN  ++  L+ AL + E++ EA   F  M+   C  + +TY+ LI
Sbjct: 457 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILI 516

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G C+ RK ++ +     M + G+ PN +TY  ++    K   + E   L    +  G +
Sbjct: 517 NGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 576

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           PD ++YN +I       +  +A  ++ E      +  T + VV++       CL +A
Sbjct: 577 PDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 633



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 202/492 (41%), Gaps = 84/492 (17%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD----------ALCKN 222
           ++ + + L+     +R +++A +++  M K+   P    +  L+            LCK 
Sbjct: 9   SSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKA 68

Query: 223 SSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           + + EA +LF+++ +  K P    + +++ G+   GK  EA  +L + K  G  P ++ Y
Sbjct: 69  NRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAY 128

Query: 282 NNLLSGYAQM----------------------------------GKMTDAFELLKEMRRK 307
           N +L+   +                                   GK+  A E+  +M R 
Sbjct: 129 NCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERA 188

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +  ++I  LC+ +K+EEA   F  M+   C  + VT+++LI G  K  ++D  
Sbjct: 189 GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDA 248

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           Y + + M+  G +P  + Y  ++ +  K    E+  ++  EM   GC PD++  N  +  
Sbjct: 249 YSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDC 308

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-- 485
             K GE ++   ++ E+ A    P   S+ +++HG +  G   E  E F  M  +G +  
Sbjct: 309 VFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD 368

Query: 486 -------------------------------SAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
                                            P   T  ++++ L +  +++ A  ++ 
Sbjct: 369 THAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFE 428

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
              + G +LNV  ++  I      G + EA     ++M   + P   T+  L+  L K  
Sbjct: 429 EAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK-- 486

Query: 575 NRQIAAEITEKV 586
               A EI E +
Sbjct: 487 ----AEEINEAL 494



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 138/281 (49%), Gaps = 13/281 (4%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ------- 321
           M  +GF P   +   L++   +  K+ +AF++++ MR+    P  ++YT+LI        
Sbjct: 1   MSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLL 60

Query: 322 ---ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
               LC+  +++EA   F ++E++        Y T+I G+  + K D  Y +L+    +G
Sbjct: 61  FPWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG 120

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            +P+ + Y  I+    KK  +EE + +  EM++   VP+V  YN++I + C+ G+L  A+
Sbjct: 121 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILIDMLCREGKLNAAL 179

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + ++ME A L P   +  +M+        L EAC  F+ M  +  +  P   T  +L++
Sbjct: 180 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK--VCTPNAVTFSSLID 237

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
            L +  +V+ A  ++  ++  G       +T  I S F  G
Sbjct: 238 GLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCG 278



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 43/293 (14%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA 185
            +A K+   V     Y A+I    K  K    + L+EEM+ +                  
Sbjct: 357 FYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK------------------ 398

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
                             G  P    +G ++D L K   + EA  LF+E +    K ++ 
Sbjct: 399 ------------------GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 440

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++SL+ G+ K G++ EA  ++ ++   G  P++  +N LL    +  ++ +A    + M
Sbjct: 441 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSM 500

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFV---EMERSGCEADVVTYTTLISGFCKS 361
           +   C PN  +Y++LI  LCR+ K    N+AFV   EM++ G + + +TYTT+ISG  K+
Sbjct: 501 KDLKCPPNQITYSILINGLCRVRKF---NKAFVFWQEMQKLGLKPNTITYTTMISGLAKA 557

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
             I     +       G +P+  +Y  ++       +  +   L  E R  GC
Sbjct: 558 GNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGC 610



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 50/351 (14%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV------------------- 279
           F PS      L+    K  KL EA  ++  M+   F P                      
Sbjct: 6   FGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVL 65

Query: 280 --------------------------VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
                                      YN ++ GY   GK  +A+ LL+  + KG  P+ 
Sbjct: 66  CKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSV 125

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  ++  L +  ++EEA R F EM+R     +V TY  LI   C+  K++   EI D 
Sbjct: 126 IAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDD 184

Query: 374 MIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
           M + G+ PN LT ++IM+    K ++LEE   +   M    C P+   ++ +I    K G
Sbjct: 185 MERAGLFPNVLT-VNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 243

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + +A +++ +M      PG   +  ++  F   G   +  + +KEMV  G   +P    
Sbjct: 244 RVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG--CSPDLTL 301

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +   ++ + +A + E  + ++  I   G   +  +++I IH L   G   E
Sbjct: 302 INTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANE 352


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 233/502 (46%), Gaps = 20/502 (3%)

Query: 141 YRALIKSLSKMRKFGAV--WALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEV 196
           +  L+ +++KM+KF  V   AL+ +M K   +P ++T      L+  +   + +  A+ +
Sbjct: 45  FNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSS---LLNGYCHGKRISDAVAL 101

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCK 255
           +D+M + G  PD   F  L+  L  ++   EA  L D M +R  +P+L  +  ++ G CK
Sbjct: 102 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 161

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G +  A  +L +M+ A  E D+V++N ++    +   + DA  L KEM  KG  PN  +
Sbjct: 162 RGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 221

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y+ LI  LC   +  +A++   +M       ++VT+  LI  F K  K     ++ D MI
Sbjct: 222 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI 281

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           +R I P+  TY  ++      + L++  ++   M    C PD+  YN +I+  CK   ++
Sbjct: 282 KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVE 341

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +   ++ EM    L   T ++  ++ G    G    A + FK+MV  G+   P   T   
Sbjct: 342 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV--PPDIMTYSI 399

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LL+ L    K+E A +V+  +     +L++Y +T  I  +   G V +       +    
Sbjct: 400 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 459

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI----TFKMYKRRGERDLKEK 611
           V P   T+  ++ G   L ++++  E    ++KM  +  +    T+    R   RD  + 
Sbjct: 460 VKPNVVTYNTMISG---LCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKA 516

Query: 612 AKKQVDGRKRRARQRRWGGGRS 633
           A  ++    R  R  R+ G  S
Sbjct: 517 ASAEL---IREMRSCRFVGDAS 535



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 182/390 (46%), Gaps = 12/390 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QPN V     Y  ++  L K       + L+ +M   K +     +F  ++      R V
Sbjct: 146 QPNLV----TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE-ADVVIFNTIIDSLCKYRHV 200

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  P+   +  L+  LC      +A++L  +M E+   P+L  F +L
Sbjct: 201 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 260

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGK VEA+ +   M     +PDI  YN+L++G+    ++  A ++ + M  K C
Sbjct: 261 IDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDC 320

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+ ++Y  LI+  C+ +++E+    F EM   G   D VTYTTLI G       D   +
Sbjct: 321 FPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 380

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ P+ +TY  ++       +LE+ +E+   M+K     D+  Y  +I   C
Sbjct: 381 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 440

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++ +  +++  +    + P   ++  M+ G   +  L EA    K+M   G L  P 
Sbjct: 441 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL--PD 498

Query: 490 YGTLKALLNSLLR----AQKVEMAKDVWSC 515
            GT   L+ + LR    A   E+ +++ SC
Sbjct: 499 SGTYNTLIRAHLRDGDKAASAELIREMRSC 528



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 189/402 (47%), Gaps = 5/402 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS---VKEAAKLFDEMRERFKPSLRHF 246
           +  AI +   M K    P  F F  LL A+ K      V   A L   M+  ++PS+   
Sbjct: 23  LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTL 82

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           +SLL G+C   ++ +A  ++ QM + G+ PD + +  L+ G     K ++A  L+  M +
Sbjct: 83  SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 142

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +GC PN  +Y V++  LC+   ++ A     +ME +  EADVV + T+I   CK R +D 
Sbjct: 143 RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDD 202

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +   M  +GI PN +TY  ++          +  +L+ +M +    P++  +N +I 
Sbjct: 203 ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 262

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              K G+  EA  + ++M   S+ P   ++  +++GF     L +A + F+ MV +    
Sbjct: 263 AFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF- 321

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   T   L+    ++++VE   +++  +  +G   +   +T  I  LF +G    A  
Sbjct: 322 -PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 380

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
               M+   V P   T++ L+ GL      + A E+ + ++K
Sbjct: 381 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 422



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     + ALI +  K  KF     L ++M  R   P + T   +  L+  F    
Sbjct: 251 NPNLV----TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFT---YNSLINGFCMHD 303

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA ++ + M    C PD   +  L+   CK+  V++  +LF EM  R        +T
Sbjct: 304 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 363

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G   +G    A+ V  QM   G  PDI+ Y+ LL G    GK+  A E+   M++ 
Sbjct: 364 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 423

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
               +   YT +I+ +C+  K+++    F  +   G + +VVTY T+ISG C  R +   
Sbjct: 424 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 483

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           Y +L  M + G LP+  TY  ++ AH +  +     EL+ EMR    V D S   +V
Sbjct: 484 YALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 540


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 189/391 (48%), Gaps = 3/391 (0%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           +  A ++  A  +   MP  GC    F +  LL  LC    V+EA  +F  M+ +   P 
Sbjct: 117 YCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPD 176

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              + ++++G C  G+  EA+ +L      GFEP++VVYN L+ GY  +G +  A ++ +
Sbjct: 177 PHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFE 236

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M   GC PN  +YT LI   C+  K++ A   F  M  +G   +VVTYT LI G C   
Sbjct: 237 RMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDG 296

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           ++D  Y +L SM   G++PN+ T   ++ A  K E + E   L+G + + G   +   Y 
Sbjct: 297 QLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYT 356

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I   CK G    A  +   + +    P   ++  ++ G   Q  L EA     +M+ +
Sbjct: 357 SLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEK 416

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+  +P   T   +++ L+R    + +K +   ++  G + +V+ +TI++ S    G ++
Sbjct: 417 GVQPSPV--TYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRME 474

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           +A    L M+D  V P   T+  L+ G   L
Sbjct: 475 DAEHMMLHMVDHGVCPNLVTYNALICGYANL 505



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 201/480 (41%), Gaps = 59/480 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    K RK      L   M      P ++T   +  L++   S   +  A  +L 
Sbjct: 250 YTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVT---YTALIQGQCSDGQLDCAYRLLQ 306

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M   G  P+E+    L+DALCK+  V EA  L   + ++  K +   +TSL+ G CK G
Sbjct: 307 SMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAG 366

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A  ++  +   GF PD   Y++L+ G  +  ++++A  +L +M  KG  P+  +YT
Sbjct: 367 RFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYT 426

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  L R    + + +   +M  +G + DV TYT  +  +C   +++    ++  M+  
Sbjct: 427 IIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDH 486

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA--------- 428
           G+ PN +TY  ++  +       +       M   GC P+  +Y V++RL          
Sbjct: 487 GVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNI 546

Query: 429 ------------------------------------------CKLGELKEAVNVWNEMEA 446
                                                     C++  L EA  +  EM++
Sbjct: 547 PANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQS 606

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
           A+L+P  D +  ++        L EA  +   MV  G +  PQ  + + +++SL     +
Sbjct: 607 ANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYI--PQLESYRHIISSLCEEGSI 664

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           + AK V+  +++K       AW I I  L   G+V E  S    M + +  P    +A+L
Sbjct: 665 QTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARL 724



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 2/329 (0%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           +LR +T+L+  +C  G L  +K  L  +  AGF PD   Y + + GY + G +  A  L 
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLF 130

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M  +GC   A +YT L+  LC    + EA   F  M+  GC  D   Y T++ G C +
Sbjct: 131 VLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGA 190

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            +      +L   +  G  PN + Y  ++  +    +LE  V++   M   GC P+V  Y
Sbjct: 191 GRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTY 250

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
             +I   CK  +L  A+ +++ M  A L P   ++  ++ G    G L  A    + M  
Sbjct: 251 TELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMEN 310

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            GL+  P   T   L+++L + ++V  A+ +   ++ KG ++N   +T  I  L   G  
Sbjct: 311 SGLV--PNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRF 368

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             A      ++    +P   T++ L+ GL
Sbjct: 369 AAADRLMQTLVSQGFVPDAHTYSSLIDGL 397



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 163/382 (42%), Gaps = 71/382 (18%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T   +  L+     A MV++A+ V   M   GC PD  V+  ++  LC     +EA  L 
Sbjct: 141 TAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLL 200

Query: 233 -DEMRERFKPSL-----------------------------------RHFTSLLYGWCKE 256
            D M E F+P++                                   R +T L+ G+CK 
Sbjct: 201 SDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKS 260

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            KL  A  +  +M DAG  P++V Y  L+ G    G++  A+ LL+ M   G  PN  + 
Sbjct: 261 RKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTC 320

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSG---------------CEA--------------- 346
           +VLI ALC+ E++ EA      + + G               C+A               
Sbjct: 321 SVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS 380

Query: 347 -----DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
                D  TY++LI G C+ +++     +LD M+++G+ P+ +TY  I+    ++   + 
Sbjct: 381 QGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADG 440

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             +++ +M   G  PDV  Y + +R  C  G +++A ++   M    + P   ++  ++ 
Sbjct: 441 SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALIC 500

Query: 462 GFLGQGCLIEACEYFKEMVGRG 483
           G+   G   +A   FK MV  G
Sbjct: 501 GYANLGLTSQAFSTFKHMVANG 522



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 146/322 (45%), Gaps = 53/322 (16%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY +LI  L K  +F A   LM+ +  +   +     +  L+      + + +A+ VLD+
Sbjct: 354 VYTSLIDGLCKAGRFAAADRLMQTLVSQG-FVPDAHTYSSLIDGLCRQKELSEAMLVLDD 412

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + G +P    +  ++D L +      + K+ D+M     KP +  +T  +  +C EG+
Sbjct: 413 MMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGR 472

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A+++++ M D G  P++V YN L+ GYA +G  + AF   K M   GC PN  SYTV
Sbjct: 473 MEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTV 532

Query: 319 LIQ---------------------------------------------------ALCRME 327
           L++                                                   +LCR++
Sbjct: 533 LLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVD 592

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           +++EA    +EM+ +        YT++I+  C+ + +      +DSM++ G +P   +Y 
Sbjct: 593 RLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYR 652

Query: 388 HIMLAHEKKEELEECVELMGEM 409
           HI+ +  ++  ++   ++ G+M
Sbjct: 653 HIISSLCEEGSIQTAKQVFGDM 674



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 2/170 (1%)

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           ++  Y  +I   C  G+L  +    + +  A  +P + ++   V G+   G L  AC  F
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLF 130

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             M  RG +      T  ALL+ L  A  V  A  V++ +   GC  + + +   +H L 
Sbjct: 131 VLMPLRGCVRTAF--TYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLC 188

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             G  +EA +   D M     P    +  L+ G   + + ++A ++ E++
Sbjct: 189 GAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERM 238



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 4/190 (2%)

Query: 147 SLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
           S+ K+ +   +  L+EEM K + P  I  +++   +        + +A  +L EM     
Sbjct: 552 SIWKIAEMKYLHGLLEEMVKLQLPSEI--DIYNCFLTSLCRVDRLDEAKILLIEMQSANL 609

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKY 264
            P E V+  ++   C+   + EA    D M +  + P L  +  ++   C+EG +  AK 
Sbjct: 610 TPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQ 669

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           V   M    +  + + +  L+ G  Q G + +   LL  M  K   P+   Y  L   + 
Sbjct: 670 VFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLTGKIT 729

Query: 325 RMEKMEEANR 334
               ++E  R
Sbjct: 730 DANDIQEIAR 739


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 205/415 (49%), Gaps = 8/415 (1%)

Query: 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           V+ LM       P  ++   + IL+        +++A  + D+M + GC+P    +  L+
Sbjct: 252 VFDLMSREGTCAPNSVS---YSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308

Query: 217 DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
            ALC    + +A  LFDEM  R  KP++  +T L+ G C++GK+ EA  V  +M   G  
Sbjct: 309 KALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIF 368

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P ++ YN L++GY + G++  AFELL  M ++ C PN  ++  L++ LCR+ K  +A   
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
              M  +G   D+V+Y  LI G C+   ++  Y++L SM    + P+ LT+  I+ A  K
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCK 488

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           + + +     +G M + G   D      +I   C +G+ ++A+ +   +    +     S
Sbjct: 489 QGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHS 548

Query: 456 FVVMVHGFLGQGC-LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
             V++   L +GC L E      ++   GL+  P   T   L++ L+R+  +  +  +  
Sbjct: 549 LNVILD-MLSKGCKLKEELAMLGKINKLGLV--PSVVTYTTLVDGLIRSGDISGSFRMLE 605

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            +   GC  NVY +TI I+ L   G V+EA      M D+ V P   T+  +++G
Sbjct: 606 LMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKG 660



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 209/440 (47%), Gaps = 8/440 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  LI  L ++ +    + L ++M ++  Q  +T  + +L++      ++ 
Sbjct: 264 PNSVS----YSILIHGLCEVGRLEEAFGLKDQMGEKGCQ-PSTRTYTVLIKALCDRGLID 318

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA  + DEM   GC+P+   +  L+D LC++  ++EA  +  +M ++   PS+  + +L+
Sbjct: 319 KAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALI 378

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+CK+G++V A  +L  M+    +P++  +N L+ G  ++GK   A  LLK M   G  
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLS 438

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  SY VLI  LCR   M  A +    M     E D +T+T +I+ FCK  K D     
Sbjct: 439 PDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAF 498

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M+++GI  +++T   ++       +  + + ++  + K+  +    + NV++ +  K
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSK 558

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             +LKE + +  ++    L P   ++  +V G +  G +  +    + M   G L  P  
Sbjct: 559 GCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCL--PNV 616

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                ++N L +  +VE A+ + S +   G   N   +T+ +    +NG +  A      
Sbjct: 617 YPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRA 676

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M++         ++ L+RG 
Sbjct: 677 MVERGYELNDRIYSSLLRGF 696



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 228/500 (45%), Gaps = 37/500 (7%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH--------------------SYDVY 141
           + P +  +VI+      ++  R++MW  K  +Y                      ++DV 
Sbjct: 67  MSPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSSGLFRVAHDVI 126

Query: 142 RALIKSLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            ALI+  S+  K    + +  +E+R+     +    +  L+   A   +   A      M
Sbjct: 127 VALIRECSRCEKEMLKLISCFDELREVSGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRM 186

Query: 201 PKYGCEPDEFVFG-----CLLDALCKNSSVKEAAKLF--DEMRERFKPSLRHFTSLLYGW 253
                E D FV G      +++ALCKN    EAA++F    ++  F       TSLL G+
Sbjct: 187 -----EADGFVVGMIDYRTIVNALCKNG-YTEAAEMFMCKILKVGFLLDSHIVTSLLLGF 240

Query: 254 CKEGKLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           C+   L +A  V   M   G   P+ V Y+ L+ G  ++G++ +AF L  +M  KGC P+
Sbjct: 241 CRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPS 300

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YTVLI+ALC    +++A   F EM   GC+ +V TYT LI G C+  KI+    +  
Sbjct: 301 TRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCR 360

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M++ GI P+ +TY  ++  + K   +    EL+  M K  C P+V  +N ++   C++G
Sbjct: 361 KMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVG 420

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +  +AV++   M    LSP   S+ V++ G   +G +  A +    M    L   P   T
Sbjct: 421 KPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDL--EPDCLT 478

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             A++N+  +  K ++A      ++ KG  L+    T  I  + + G  ++A      ++
Sbjct: 479 FTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLV 538

Query: 553 DADVMPQPDTFAKLMRGLKK 572
              ++  P +   ++  L K
Sbjct: 539 KMRMLTTPHSLNVILDMLSK 558



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 13/306 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +       + L+  M     +P  +T   F  ++  F        A   L 
Sbjct: 444 YNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLT---FTAIINAFCKQGKADVASAFLG 500

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG- 257
            M + G   DE     L+D +C     ++A  + + + +    +  H  +++     +G 
Sbjct: 501 LMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGC 560

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL E   +L ++   G  P +V Y  L+ G  + G ++ +F +L+ M+  GC PN   YT
Sbjct: 561 KLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYT 620

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  LC+  ++EEA +    M+ SG   + VTYT ++ G+  + K+DR  E + +M++R
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680

Query: 378 GILPNQLTYLHIM----LAHEKKEELE-ECV-ELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           G   N   Y  ++    L+ +   E + EC+ EL+  + ++G         +V RL CK 
Sbjct: 681 GYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRL-CKE 739

Query: 432 GELKEA 437
           G   E+
Sbjct: 740 GRTDES 745



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/345 (17%), Positives = 150/345 (43%), Gaps = 43/345 (12%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            LI  +  + K      ++E + K +  L T     +++   +    +K+ + +L ++ K
Sbjct: 516 TLIDGVCNVGKTRDALFILETLVKMR-MLTTPHSLNVILDMLSKGCKLKEELAMLGKINK 574

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVE 261
            G  P    +  L+D L ++  +  + ++ + M+     P++  +T ++ G C+ G++ E
Sbjct: 575 LGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEE 634

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A+ +L  M+D+G  P+ V Y  ++ GY   GK+  A E ++ M  +G + N   Y+ L++
Sbjct: 635 AEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLR 694

Query: 322 A----------------------------------------LCRMEKMEEANRAFVEMER 341
                                                    LC+  + +E+N     + +
Sbjct: 695 GFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILK 754

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SG   +      ++  +C  +K  +C E++  +++ G +P+  ++  ++   +K+ + E 
Sbjct: 755 SGVFLEK-AIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTER 813

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             EL+ E+     V + S     +    + G+  E +++ +++ +
Sbjct: 814 ARELVMELLTSNGVVEKSGVLPYVECLMETGDCSEVIDLVDQLHS 858


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 216/479 (45%), Gaps = 55/479 (11%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMP 201
           L+  + +M +   V +L ++M +++   I  ++  F IL++ F S   +  A+    ++ 
Sbjct: 85  LMGVVVRMERPDLVISLYQKMERKQ---IRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 141

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLV 260
           K G  PD   F  LL  LC    V EA  LF +M E   +P++  FT+L+ G C+EG++V
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVL 319
           EA  +L +M + G +P  + Y  ++ G  + G    A  LL++M       PN   Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS---------------RKI 364
           I +LC+  +  +A   F EM+  G   D+ TY ++I GFC S               RKI
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 365 D--------------------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                                   E+ D M+ RGI+PN +TY  ++    K+  L+    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   GC P++  +N +I   C    + + + + +EM    L   T ++  ++HGF 
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA-----------KDVW 513
             G L  A +  +EM+  GL   P   T   LL+ L    K++ A           KD+ 
Sbjct: 442 LVGDLNAALDLLQEMISSGL--CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +     G E +V  + I I  L + G   EA     +M    ++P   T++ ++ GL K
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 219/467 (46%), Gaps = 53/467 (11%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   F  LM        + +A+ +LD M + G +P +  +G ++D +CK      
Sbjct: 181 RPNVVT---FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVS 237

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E     P++  +++++   CK+G+  +A+ +  +M++ G  PD+  YN+++
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   G+ +DA +LL+EM  +   P+  +Y  LI A  +  K  EA   + EM   G  
Sbjct: 298 VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII 357

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            + +TY+++I GFCK  ++D    +   M  +G  PN +T+  ++  +   + +++ +EL
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL---------------- 449
           + EM + G V D + YN +I     +G+L  A+++  EM ++ L                
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 450 ------------------------------SPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
                                          P   ++ +++ G + +G  +EA E ++EM
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
             RG++  P   T  ++++ L +  +++ A  ++  + +K    NV  +T  I+     G
Sbjct: 538 PHRGIV--PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            V +      +M    ++    T+  L+ G +K+ N   A +I +++
Sbjct: 596 RVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 19/383 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I       ++     L++EM  RK  P ++T   +  L+  F       +A E+ D
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT---YNALINAFVKEGKFFEAEELYD 349

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  ++D  CK + +  A  +F  M  +   P+L  F +L+ G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +L +M + G   D   YN L+ G+  +G +  A +LL+EM   G  P+  +  
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDR 366
            L+  LC   K+++A   F  M++S           G E DV TY  LISG     K   
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P+V  +  +I 
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + + + ++ EM    +     +++ ++ GF   G +  A + F+EM+  G+  
Sbjct: 590 GYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY- 648

Query: 487 APQYGTLKALLNSLLRAQKVEMA 509
            P   T++ +L  L   ++++ A
Sbjct: 649 -PDTITIRNMLTGLWSKEELKRA 670



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 184/409 (44%), Gaps = 4/409 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L   F   + ++ AI++  +M +    P    F  L+  + +         L+ +M R++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +  +  FT L+  +C   KL  A     ++   G  PD+V +N LL G     ++++A 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +M    C PN  ++T L+  LCR  ++ EA      M   G +   +TY T++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 359 CKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           CK         +L  M +   I+PN + Y  I+ +  K     +   L  EM++ G  PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN +I   C  G   +A  +  EM    +SP   ++  +++ F+ +G   EA E + 
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ RG++  P   T  ++++   +  +++ A+ ++  + TKGC  N+  +   I     
Sbjct: 350 EMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              + +      +M +  ++    T+  L+ G   + +   A ++ +++
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P LIT   F  L+  +  A+ 
Sbjct: 358 PNTI----TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLIT---FNTLIDGYCGAKR 410

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EM + G   D   +  L+        +  A  L  EM      P +    +
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + F  M       +VVT+TTLI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 418 -VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++  N++  L  K  ELK AV +  +++ +
Sbjct: 651 TITIRNMLTGLWSK-EELKRAVAMLEKLQMS 680


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 145/553 (26%), Positives = 232/553 (41%), Gaps = 110/553 (19%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WAS  P + HS   YRALI+ L    +F  V+ L++EM          E+F+ ++R  
Sbjct: 59  FKWASNLPKFTHSQSTYRALIQKLCAFHRFDTVYQLLDEMPHAIGSPPDEEIFLTVIRGL 118

Query: 185 ASARMVKKAIEVLDEMPKYGCEP-----------------------------------DE 209
             ARM+   I+VLD + K+G  P                                   D+
Sbjct: 119 GRARMIPHVIKVLDLISKFGKNPSLKIFNSILDVLVKVDIDVAREFYRKQMMGSGVQGDD 178

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK---------- 258
           + F  L+  LC  + + +  +L   M+ R  KP+   + +LL+  CK GK          
Sbjct: 179 YTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVVYNTLLHALCKNGKVGRARSLMDE 238

Query: 259 ---------------------LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
                                LV+A  +L +    GF PD+V    ++      G++T+A
Sbjct: 239 IEEPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVEILCNAGRVTEA 298

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            E+L+ +  KG   +  +Y  L++  CR+ K++ A+R   EMER GC  +V TY  LISG
Sbjct: 299 VEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLPNVETYNILISG 358

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTY----------------LHIMLAHE------- 394
           FC S   D   ++ + M   GI  N  TY                L I+   E       
Sbjct: 359 FCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSG 418

Query: 395 --------------KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
                         KK   +E +E + +M K+   P   + ++ I   C+ G +K A  V
Sbjct: 419 GRISPYNSVLYGLYKKNMWDEALEFLMKMEKL--FPRAVDRSLRILGFCEKGAVKNAKMV 476

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNS 499
           +++M     +P    +  +VHGF  +G L EA E   EMVG G  L A  +    AL++ 
Sbjct: 477 FDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGYFLVASGF---NALIHG 533

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
                K E A  +   +V +GC  +   ++  I +L   G+ ++A S    M++  + P 
Sbjct: 534 FCGQGKDESALKLLDDMVGRGCVPDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGITPD 593

Query: 560 PDTFAKLMRGLKK 572
             T+  L+  L K
Sbjct: 594 SSTWNSLLIRLSK 606



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 190/443 (42%), Gaps = 60/443 (13%)

Query: 96  QHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK---QPNYVHSYDVYRALIKSLSKMR 152
            ++  +L  GL   + NR GD    G+R          +PN V    VY  L+ +L K  
Sbjct: 178 DYTFAILMKGLC--LTNRIGD----GFRLLQVMKSRGVKPNAV----VYNTLLHALCKNG 227

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212
           K G   +LM+E+  E+P  +T   F +L+  +     + +A+ +L++    G  PD    
Sbjct: 228 KVGRARSLMDEI--EEPNDVT---FNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTM 282

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH---FTSLLYGWCKEGKLVEAKYVLVQM 269
             +++ LC    V EA ++ +  R  +K  L     + +LL G+C+ GK+  A   L +M
Sbjct: 283 TKVVEILCNAGRVTEAVEMLE--RVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEM 340

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           +  G  P++  YN L+SG+   G    A ++  +M+  G   N ++Y  LI+ L    ++
Sbjct: 341 ERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRI 400

Query: 330 EEANRAFVEMERS--GCEADVVTYTTLISGFCK------------------SRKIDRCYE 369
           EE  +    ME S  G    +  Y +++ G  K                   R +DR   
Sbjct: 401 EEGLKILELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFPRAVDRSLR 460

Query: 370 IL---------------DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           IL               D MI  G  PN L Y  ++    ++  L E  ELM EM   G 
Sbjct: 461 ILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGY 520

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
               S +N +I   C  G+ + A+ + ++M      P   ++  ++     +G   +A  
Sbjct: 521 FLVASGFNALIHGFCGQGKDESALKLLDDMVGRGCVPDRGTYSPLIDALCRKGNFQKALS 580

Query: 475 YFKEMVGRGLLSAPQYGTLKALL 497
            F +M+ +G+   P   T  +LL
Sbjct: 581 IFNQMIEKGI--TPDSSTWNSLL 601



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 37/292 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L++   ++ K       ++EM + K  L   E + IL+  F  + M   A+++ ++M
Sbjct: 317 YNTLLRGFCRLGKIKVAHRFLKEMER-KGCLPNVETYNILISGFCDSGMFDMALDMFNDM 375

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS---LRHFTSLLYG----- 252
              G   +   +  L+  L     ++E  K+ + M E    S   +  + S+LYG     
Sbjct: 376 KTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGGRISPYNSVLYGLYKKN 435

Query: 253 ----------------------------WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
                                       +C++G +  AK V  QM + G  P+I+VY+ L
Sbjct: 436 MWDEALEFLMKMEKLFPRAVDRSLRILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCL 495

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G+ Q G + +AFEL+ EM   G    A+ +  LI   C   K E A +   +M   GC
Sbjct: 496 VHGFCQEGNLREAFELMNEMVGHGYFLVASGFNALIHGFCGQGKDESALKLLDDMVGRGC 555

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             D  TY+ LI   C+     +   I + MI++GI P+  T+  +++   K+
Sbjct: 556 VPDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGITPDSSTWNSLLIRLSKE 607


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 208/422 (49%), Gaps = 9/422 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           ++  L   R      AL ++M +      TT  +  L+     AR++ +A+ +L +M   
Sbjct: 52  ILAELCDARDTTTAMALFDKMAELGAVNHTT--YYNLIHPLCKARLLDEAMGLLLDMKSR 109

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           G  P   +   ++  LC+   ++ A  ++ +M +   P    +T L++G  K G+L +A 
Sbjct: 110 GMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAV 169

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            VL +M  A   PD      ++       ++ DA EL++EM  +G   NA +Y+ L+  L
Sbjct: 170 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 229

Query: 324 CRMEKMEEANRAFV-EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           C+ E+++EA    + E+ R G   D+VTY+T+I G CK+ ++    +I + M      P 
Sbjct: 230 CKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPT 286

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++  + +  +++E + L+G+M    C PDV  Y  ++   CK+G L +A  ++ 
Sbjct: 287 AITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQ 346

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           +M A  LSP   +F  +V G  G+G + +A E  +E+  RG    P   T   +++   +
Sbjct: 347 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG--CPPTIYTYNCVVDGYCK 404

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           + +V  A+++ +   ++G   N   + I +      G   +A  Y LD ++++  P P +
Sbjct: 405 SNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY-LDQLNSEGGPCPTS 463

Query: 563 FA 564
            A
Sbjct: 464 VA 465



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 206/427 (48%), Gaps = 16/427 (3%)

Query: 102 LRPG--LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYD--VYRALIKSLSKMRKFGAV 157
           + PG  L   VI     AG L  R+ +   +Q N  H  D   Y  L+  LSK  +    
Sbjct: 111 MNPGTLLHNVVIGGLCRAGRL--RHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDA 168

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
             +++EM   +  +       ++++       V  A E+++EM   G   +   +  L+D
Sbjct: 169 VQVLQEMVSAR-HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVD 227

Query: 218 ALCKNSSVKEAAKLF--DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
            LCK   + EA  L   +  R  F P +  +++++ G CK G+L +A  +  +M  A   
Sbjct: 228 GLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA--- 284

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  + YN+L+ GY + G M +A  LL +M    C P+  +YT L+ A C+M ++++A   
Sbjct: 285 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYEL 344

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F +M  +    DVVT+T+L+ G C   +++   E+L+ + +RG  P   TY  ++  + K
Sbjct: 345 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 404

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGT 453
             ++ +  EL+ + R  G VP+   YN+++   C+ G   +A+   +++  E        
Sbjct: 405 SNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSV 464

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
             + +++      G   +A ++++EM+ RG +  P   T   ++ +L +A + + A ++ 
Sbjct: 465 AMYAIILDALCRDGRTDDAVQFYEEMIQRGYV--PAAATFATVVFALCKAHQPQQAHELL 522

Query: 514 SCIVTKG 520
             ++  G
Sbjct: 523 EEMIKYG 529



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 7/307 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I  L K  +      + EEM    P  IT   +  L+  +  A  + +AI +L +M
Sbjct: 258 YSTVIDGLCKAGRLRDAVDIFEEMSC-APTAIT---YNSLIGGYCRAGDMDEAIRLLGKM 313

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
               C PD   +  L+ A CK   + +A +LF +M   +  P +  FTSL+ G C EG++
Sbjct: 314 VDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRM 373

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L ++   G  P I  YN ++ GY +  ++  A EL+ + R +G  PN  +Y +L
Sbjct: 374 EDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNIL 433

Query: 320 IQALCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +   CR  + ++A +   ++   G  C   V  Y  ++   C+  + D   +  + MIQR
Sbjct: 434 VAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQR 493

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G +P   T+  ++ A  K  + ++  EL+ EM K G  P     + V+   C+ G +++A
Sbjct: 494 GYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKA 553

Query: 438 VNVWNEM 444
             + +E+
Sbjct: 554 DELASEL 560



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 135/275 (49%), Gaps = 8/275 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    +         L+ +M  +   P +IT   +  LM  F     +  A E+  
Sbjct: 290 YNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVIT---YTTLMSAFCKMGRLDDAYELFQ 346

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M      PD   F  L+D LC    +++A +L +E+  R   P++  +  ++ G+CK  
Sbjct: 347 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSN 406

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNANS 315
           ++ +A+ ++   +  GF P+ V YN L++G  + G+   A + L ++  +G  C  +   
Sbjct: 407 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 466

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++ ALCR  + ++A + + EM + G      T+ T++   CK+ +  + +E+L+ MI
Sbjct: 467 YAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMI 526

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           + G  P   T   ++ A+ +   +++  EL  E+R
Sbjct: 527 KYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 216/479 (45%), Gaps = 55/479 (11%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMP 201
           L+  + +M +   V +L ++M +++   I  ++  F IL++ F S   +  A+    ++ 
Sbjct: 85  LMGVVVRMERPDLVISLYQKMERKQ---IRCDIYSFTILIKCFCSCSKLPFALSTFGKIT 141

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLV 260
           K G  PD   F  LL  LC    V EA  LF +M E   +P++  FT+L+ G C+EG++V
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVL 319
           EA  +L +M + G +P  + Y  ++ G  + G    A  LL++M       PN   Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS---------------RKI 364
           I +LC+  +  +A   F EM+  G   D+ TY ++I GFC S               RKI
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 365 D--------------------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                                   E+ D M+ RGI+PN +TY  ++    K+  L+    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   GC P++  +N +I   C    + + + + +EM    L   T ++  ++HGF 
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA-----------KDVW 513
             G L  A +  +EM+  GL   P   T   LL+ L    K++ A           KD+ 
Sbjct: 442 LVGDLNAALDLLQEMISSGL--CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +     G E +V  + I I  L + G   EA     +M    ++P   T++ ++ GL K
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/559 (22%), Positives = 244/559 (43%), Gaps = 83/559 (14%)

Query: 78  FRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHS 137
           F IL K      KL  AL   G + + GL                         P+ V  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGL------------------------HPDVV-- 150

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIE 195
              +  L+  L    +      L  +M +   +P ++T   F  LM        + +A+ 
Sbjct: 151 --TFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVT---FTTLMNGLCREGRIVEAVA 205

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGW 253
           +LD M + G +P +  +G ++D +CK      A  L  +M E     P++  +++++   
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+G+  +A+ +  +M++ G  PD+  YN+++ G+   G+ +DA +LL+EM  +   P+ 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  LI A  +  K  EA   + EM   G   + +TY+++I GFCK  ++D    +   
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M  +G  PN +T+  ++  +   + +++ +EL+ EM + G V D + YN +I     +G+
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 434 LKEAVNVWNEMEAASL-------------------------------------------- 449
           L  A+++  EM ++ L                                            
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN 505

Query: 450 --SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   ++ +++ G + +G  +EA E ++EM  RG++  P   T  ++++ L +  +++
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV--PDTITYSSMIDGLCKQSRLD 563

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A  ++  + +K    NV  +T  I+     G V +      +M    ++    T+  L+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 568 RGLKKLYNRQIAAEITEKV 586
            G +K+ N   A +I +++
Sbjct: 624 CGFRKVGNINGALDIFQEM 642



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 19/383 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I       ++     L++EM  RK  P ++T   +  L+  F       +A E+ D
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT---YNALINAFVKEGKFFEAEELYD 349

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  ++D  CK + +  A  +F  M  +   P+L  F +L+ G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +L +M + G   D   YN L+ G+  +G +  A +LL+EM   G  P+  +  
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDR 366
            L+  LC   K+++A   F  M++S           G E DV TY  LISG     K   
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P+V  +  +I 
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + + + ++ EM    +     +++ ++ GF   G +  A + F+EM+  G+  
Sbjct: 590 GYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY- 648

Query: 487 APQYGTLKALLNSLLRAQKVEMA 509
            P   T++ +L  L   ++++ A
Sbjct: 649 -PDTITIRNMLTGLWSKEELKRA 670



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 184/409 (44%), Gaps = 4/409 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L   F   + ++ AI++  +M +    P    F  L+  + +         L+ +M R++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +  +  FT L+  +C   KL  A     ++   G  PD+V +N LL G     ++++A 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +M    C PN  ++T L+  LCR  ++ EA      M   G +   +TY T++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 359 CKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           CK         +L  M +   I+PN + Y  I+ +  K     +   L  EM++ G  PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN +I   C  G   +A  +  EM    +SP   ++  +++ F+ +G   EA E + 
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ RG++  P   T  ++++   +  +++ A+ ++  + TKGC  N+  +   I     
Sbjct: 350 EMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              + +      +M +  ++    T+  L+ G   + +   A ++ +++
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P LIT   F  L+  +  A+ 
Sbjct: 358 PNTI----TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLIT---FNTLIDGYCGAKR 410

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EM + G   D   +  L+        +  A  L  EM      P +    +
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + F  M       +VVT+TTLI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 418 -VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++  N++  L  K  ELK AV +  +++ +
Sbjct: 651 TITIRNMLTGLWSK-EELKRAVAMLEKLQMS 680


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 232/524 (44%), Gaps = 63/524 (12%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVK 191
           +V     Y  +I  L    K    + L EEM+K    P + T   + IL+  F  A +++
Sbjct: 449 FVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYT---YTILIDSFCKAGLIQ 505

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLL 250
           +A    DEM +  C P+   +  L+ A  K   V +A KLF+ M  E  KP++  +T+L+
Sbjct: 506 QARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALI 565

Query: 251 YGWCKEGKLVEAKYVLVQMK--------DAGFE--------PDIVVYNNLLSGYAQMGKM 294
            G CK G++ +A  +  +M+        D  F+        P+I+ Y  L+ G  +  ++
Sbjct: 566 DGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRV 625

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG----------- 343
            +A ELL  M   GC+PN   Y  LI   C+  K+E A   FV+M   G           
Sbjct: 626 EEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSL 685

Query: 344 ------------------------CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                                   C  +VV YT +I G CK  K +  Y ++  M + G 
Sbjct: 686 INSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGC 745

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +TY  ++    K  ++E+C+EL  +M   GC P+   Y V+I   C  G L EA  
Sbjct: 746 YPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHR 805

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + +EM+         S+  ++ GF  +   I +     E+      S P     + L+++
Sbjct: 806 LLDEMKQTYWPRHISSYRKIIEGFNRE--FITSIGLLDELSENE--SVPVESLYRILIDN 861

Query: 500 LLRAQKVEMAKDVWSCIVTKG--CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
            ++A ++E A ++   I +       N Y +T  I SL     V +A      M++ +V+
Sbjct: 862 FIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVV 921

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYK 601
           P+  TF  L++GL ++   Q A ++++ + +M       F  YK
Sbjct: 922 PELSTFVHLIKGLTRVGKWQEALQLSDSICQMVCHVCSNFVNYK 965



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 196/425 (46%), Gaps = 31/425 (7%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV------KEA 228
           E+F  L+  +  +R    A ++  +M K GC+P   ++   + ++C N  +      + A
Sbjct: 343 EMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELA 402

Query: 229 AKLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            K + EM +      K ++ +F   L   C  GK  +A  ++ +M   GF PD   Y+ +
Sbjct: 403 EKAYSEMLDLGVVLNKVNVSNFARCL---CGAGKFDKAFEIICEMMSKGFVPDDSTYSKV 459

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +       K+  AF L +EM++ G  P+  +YT+LI + C+   +++A   F EM R  C
Sbjct: 460 IGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNC 519

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             +VVTYT+LI  + K+RK+    ++ + M+  G  PN +TY  ++  H K  ++++  +
Sbjct: 520 TPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQ 579

Query: 405 LMGEMR---------------KIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           +   M+                  C  P++  Y  ++   CK   ++EA  + + M    
Sbjct: 580 IYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNG 639

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P    +  ++ GF   G L  A E F +M  RG    P   T  +L+NSL + +++++
Sbjct: 640 CEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGY--CPNLYTYSSLINSLFKEKRLDL 697

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
              V S ++   C  NV  +T  I  L   G  +EA    L M +    P   T+  ++ 
Sbjct: 698 VLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMID 757

Query: 569 GLKKL 573
           G  K+
Sbjct: 758 GFGKI 762



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/464 (23%), Positives = 200/464 (43%), Gaps = 46/464 (9%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLS--------------------------KMRKF--- 154
           +++WAS+Q  Y H+  VY ALI+ L                           K+  F   
Sbjct: 119 FFLWASRQIGYSHTPVVYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQ 178

Query: 155 ----GAVWAL-MEEMRKEKP--QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
                 +W + +EE+ + K      +   +  L++ F  A  +  A  V  EM   G   
Sbjct: 179 KCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRM 238

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
           D    GC   +LCK     +A  L +  +E F P    +  ++ G C+     EA  +L 
Sbjct: 239 DGCTLGCFAYSLCKAGRCGDALSLLE--KEEFVPDTVFYNRMVSGLCEASLFQEAMDILD 296

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M+     P++V Y  LLSG    G++     +L  M  +GC PN   +  L+ A C+  
Sbjct: 297 RMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSR 356

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK------IDRCYEILDSMIQRGILP 381
               A + F +M + GC+   + Y   I   C + +      ++   +    M+  G++ 
Sbjct: 357 DYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVL 416

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N++   +         + ++  E++ EM   G VPD S Y+ VI   C   ++++A  ++
Sbjct: 417 NKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLF 476

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM+   + P   ++ +++  F   G + +A  +F EM+       P   T  +L+++ L
Sbjct: 477 EEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDN--CTPNVVTYTSLIHAYL 534

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
           +A+KV  A  ++  ++ +G + NV  +T  I      G + +AC
Sbjct: 535 KARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKAC 578



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 166/403 (41%), Gaps = 43/403 (10%)

Query: 211 VFGCLLDALCKNSSVKE--AAKLFDEMRERFKPSLRHFTS-LLYGWCKEGKLVEAKYVLV 267
           V+  L++ LC N+   +  + K   ++R+  +  LR   + L+   C+ G    A   L 
Sbjct: 135 VYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELG 194

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-----RRKGCD------------ 310
           ++KD G++     YN L+  + +  K+  AF + +EM     R  GC             
Sbjct: 195 RLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAG 254

Query: 311 ---------------PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
                          P+   Y  ++  LC     +EA      M    C  +VVTY  L+
Sbjct: 255 RCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILL 314

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           SG     ++ RC  IL  M+  G  PN+  +  ++ A+ K  +     +L  +M K GC 
Sbjct: 315 SGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQ 374

Query: 416 PDVSNYNVVIRLACKLGEL--KEAVNVWNEMEAASLSPGTDSFVVMVHGF----LGQGCL 469
           P    YN+ I   C   EL   + + +  +  +  L  G     V V  F     G G  
Sbjct: 375 PGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 434

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A E   EM+ +G +  P   T   ++  L  A KVE A  ++  +   G   +VY +T
Sbjct: 435 DKAFEIICEMMSKGFV--PDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYT 492

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           I I S    G +++A ++  +M+  +  P   T+  L+    K
Sbjct: 493 ILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLK 535


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 213/441 (48%), Gaps = 13/441 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I    K    G  ++   EM  R+  P ++T   +  ++      + + KA+EVL 
Sbjct: 199 YTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVT---YSSIIAALCKGQAMDKAMEVLT 255

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR------ERFKPSLRHFTSLLYG 252
            M K G  P+   +  ++   C +   KEA     ++R      +  +P +  + +LL G
Sbjct: 256 SMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQG 315

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +  +G LV    +L  M   G  PD  VYN L+  YA+ GK+ +A  +  +MR++G +P+
Sbjct: 316 YATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPD 375

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +Y  +I  LC+  ++E+A   F +M   G     + Y +LI G C   K +R  E++ 
Sbjct: 376 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 435

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ RGI  N + +  I+ +H K+  + E  +L   M +IG  PD+  Y+ +I   C  G
Sbjct: 436 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 495

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           ++ EA+ + + M +  L P T ++  +++G+     + +A   FKEM   G+  +P   T
Sbjct: 496 KMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGV--SPDIIT 553

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              +L  L + ++   AK+++  I   G ++ +  + I +H L  N    +A     ++ 
Sbjct: 554 YNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLC 613

Query: 553 DADVMPQPDTFAKLMRGLKKL 573
             D+  +  TF  ++  L K+
Sbjct: 614 LMDLKLEARTFNIMIDALLKV 634



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 212/457 (46%), Gaps = 18/457 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A K    VH+Y +   LI    +  +    +A +  + K K   +    F  L++   + 
Sbjct: 80  AGKVTPTVHTYAI---LIGCCCRADRLDLGFAALGNVVK-KGFRVEAITFTPLLKGLCAD 135

Query: 188 RMVKKAIE-VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPS 242
           +    A++ VL  M +  C PD F    LL  LC  +  +EA +L   M +       P 
Sbjct: 136 KRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPD 195

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +T+++ G+ KEG   +A     +M D    PD+V Y+++++   +   M  A E+L 
Sbjct: 196 VVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLT 255

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS------GCEADVVTYTTLIS 356
            M + G  PN  +YT ++   C   + +EA   F++  RS      G E D+ TY TL+ 
Sbjct: 256 SMVKNGVMPNCRTYTSIMHGYCSSGQPKEA-IGFLKKVRSDGVEPDGLEPDIATYCTLLQ 314

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G+     +   + +LD M++ GI P+   Y  ++ A+ K+ +++E + +  +MR+ G  P
Sbjct: 315 GYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNP 374

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D   Y  VI + CK G +++A+  + +M    LSPG   +  ++HG         A E  
Sbjct: 375 DAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            EM+ RG+     +    ++++S  +  +V  ++ ++  +V  G + ++  ++  I    
Sbjct: 435 LEMLDRGICLNTIF--FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 492

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             G + EA      M+   + P   T+  L+ G  K+
Sbjct: 493 LAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKI 529



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 187/422 (44%), Gaps = 42/422 (9%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P + T   +  L++ +A+   +     +LD M + G  PD +V+  L+ A  K   V E
Sbjct: 303 EPDIAT---YCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDE 359

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +F +MR++   P    + +++   CK G++ +A     QM D G  P  +VYN+L+ 
Sbjct: 360 AMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 419

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G     K   A EL+ EM  +G   N   +  +I + C+  ++ E+ + F  M R G + 
Sbjct: 420 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 479

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D++TY+TLI G+C + K+D   ++L  M+  G+ PN +TY  ++  + K   + + + L 
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLF 539

Query: 407 GEMRKIGCVPDV-----------------------------------SNYNVVIRLACKL 431
            EM   G  PD+                                   S YN+++   CK 
Sbjct: 540 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 599

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
               +A+ ++  +    L     +F +M+   L  G   EA + F      GL+  P Y 
Sbjct: 600 KLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLV--PNYW 657

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T + +  +++    +E    ++  +   GC ++       +  L   G +  A +Y L M
Sbjct: 658 TYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTY-LSM 716

Query: 552 MD 553
           +D
Sbjct: 717 ID 718



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 192/415 (46%), Gaps = 10/415 (2%)

Query: 133 NYVH-SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           N +H  + VY  LI + +K  K      +  +MR++   P  +T    + ++ +  S R 
Sbjct: 335 NGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCK--SGR- 391

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V+ A+   ++M   G  P   V+  L+  LC  +  + A +L  EM +R    +   F S
Sbjct: 392 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 451

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CKEG+++E++ +   M   G +PDI+ Y+ L+ GY   GKM +A +LL  M   G
Sbjct: 452 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG 511

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  +Y  LI   C++ +M +A   F EME SG   D++TY  ++ G  ++R+     
Sbjct: 512 LKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 571

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+   + + G      TY  I+    K +  ++ + +   +  +    +   +N++I   
Sbjct: 572 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 631

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K+G   EA +++    +  L P   ++ +M    +GQG L E  + F  M   G     
Sbjct: 632 LKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG--CTV 689

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
             G L  ++  LL+  ++  A    S I  K   L     +++I  L S G  +E
Sbjct: 690 DSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFI-DLLSGGKYQE 743


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 177/362 (48%), Gaps = 2/362 (0%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQP-NYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           P L   V+ R  + G    +++ +       YVH    +   I   +++     VW+L+ 
Sbjct: 56  PNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIH 115

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            MR  +    + + F I+  R+ASA    KA+++   M ++GC  D   F  +LD LCK+
Sbjct: 116 RMRSLRIG-PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 174

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
             V++A +LF  +R RF      +  +L GWC   +  +A  VL +M + G  P++  YN
Sbjct: 175 KRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYN 234

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L G+ + G++  A+E   EM+++ C+ +  +YT ++       +++ A   F EM R 
Sbjct: 235 TMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIRE 294

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G    V TY  +I   CK   ++    + + M++RG  PN  TY  ++       E    
Sbjct: 295 GVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRG 354

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            ELM  M   GC P+   YN++IR   +  E+++A+ ++ +M +    P  D++ +++ G
Sbjct: 355 EELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISG 414

Query: 463 FL 464
             
Sbjct: 415 MF 416



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 100/204 (49%), Gaps = 6/204 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  ++K   +  +    W    EM+K   + I    +  ++  F  A  +K+A  V DE
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE-IDVVTYTTVVHGFGVAGEIKRARNVFDE 290

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + G  P    +  ++  LCK  +V+ A  +F+EM R  ++P++  +  L+ G    G+
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
               + ++ +M++ G EP+   YN ++  Y++  ++  A  L ++M    C PN ++Y +
Sbjct: 351 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 410

Query: 319 LIQALCRMEKMEE----ANRAFVE 338
           LI  +   ++ E+     N+AF +
Sbjct: 411 LISGMFVRKRSEDMVVAGNQAFAK 434



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 113/233 (48%), Gaps = 11/233 (4%)

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + ++  M    I P+  T+  +   +    + ++ V+L   M + GC  D++++N ++ +
Sbjct: 111 WSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDV 170

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRG 483
            CK   +++A  ++  +     S  T ++ V+++G+    CLI+    A E  KEMV RG
Sbjct: 171 LCKSKRVEKAYELFRALRG-RFSVDTVTYNVILNGW----CLIKRTPKALEVLKEMVERG 225

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +   P   T   +L    RA ++  A + +  +  + CE++V  +T  +H     G +K 
Sbjct: 226 I--NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 283

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           A +   +M+   V+P   T+  +++ L K  N + A  + E++ +   E  +T
Sbjct: 284 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 336


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 216/457 (47%), Gaps = 9/457 (1%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEV 176
           +L +  Y    +    V+ Y +   +I +L K +K     + + +M ++   P ++T   
Sbjct: 79  DLAWEIYQEVVRSGVQVNVYTL-NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVT--- 134

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           +  L+  +    ++++A E++D M   G +P  F +  +++ LCK      A  + DEM 
Sbjct: 135 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 194

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +    P    +  LL   C+   +++A+ +  +M   G  PD+V ++ L+   ++ G + 
Sbjct: 195 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A +  ++M+  G  P+   YT+LI   CR   M EA +   EM   GC  DVVTY T++
Sbjct: 255 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 314

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G CK + +    E+   M +RG+ P+  T+  ++  + K   + + V L   M +    
Sbjct: 315 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 374

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  YN +I   CK  E+++   +WN+M +  + P   S+ ++++G+   GC+ EA   
Sbjct: 375 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 434

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           + EMV +G  +     T   ++    RA     A +  S ++ KG   +   +   I+  
Sbjct: 435 WDEMVEKGFEATII--TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGF 492

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
               ++  A +    M ++ ++P   T+  ++ G  +
Sbjct: 493 IKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSR 529



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 6/353 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI  LSK            +M+     P  +   ++ IL+  F    ++ +A++V D
Sbjct: 240 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNV---IYTILIGGFCRNGVMSEALKVRD 296

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + GC  D   +  +L+ LCK   + EA +LF EM ER   P    FT+L+ G+ K+G
Sbjct: 297 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDG 356

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  +   M     +PD+V YN L+ G+ +  +M    EL  +M  +   PN  SY 
Sbjct: 357 NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 416

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C M  + EA R + EM   G EA ++T  T++ G+C++    +  E L +M+ +
Sbjct: 417 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 476

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI+P+ +TY  ++    K+E ++    L+ +M   G +PDV  YNV++    + G ++EA
Sbjct: 477 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEA 536

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             +  +M    ++P   ++  +++G + Q  L EA     EM+ RG +   ++
Sbjct: 537 ELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 589



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 2/339 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L+  + +  KL E       +K  G    I   N+LL G  ++G +  A+E+ +E+ 
Sbjct: 30  FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 89

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           R G   N  +  ++I ALC+ +K+E       +ME  G   DVVTY TLI+ +C+   ++
Sbjct: 90  RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 149

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             +E++DSM  +G+ P   TY  I+    K  +      ++ EM KIG  PD + YN+++
Sbjct: 150 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 209

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+   + +A  +++EM +  + P   SF  ++      GCL +A +YF++M   GL 
Sbjct: 210 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL- 268

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            AP       L+    R   +  A  V   ++ +GC L+V  +   ++ L     + EA 
Sbjct: 269 -APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD 327

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
               +M +  V P   TF  L+ G  K  N   A  + E
Sbjct: 328 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 366



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 193/392 (49%), Gaps = 11/392 (2%)

Query: 189 MVKKA----IEVLDEMP-KYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKP 241
           MV+K+    +E+++ +   YG C  +  VF  L+    +   ++E  + F  ++ +    
Sbjct: 1   MVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCV 60

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           S+    SLL G  K G +  A  +  ++  +G + ++   N +++   +  K+ +    L
Sbjct: 61  SINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFL 120

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +M  KG  P+  +Y  LI A CR   +EEA      M   G +  V TY  +I+G CK+
Sbjct: 121 SDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKT 180

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            K  R   +LD M++ G+ P+  TY  +++   + + + +   +  EM   G VPD+ ++
Sbjct: 181 GKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSF 240

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           + +I L  K G L +A+  + +M+ A L+P    + +++ GF   G + EA +   EM+ 
Sbjct: 241 SALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLE 300

Query: 482 RG-LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           +G +L    Y T   +LN L + + +  A ++++ +  +G   + Y +T  I+    +G+
Sbjct: 301 QGCVLDVVTYNT---ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 357

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + +A +    M+  ++ P   T+  L+ G  K
Sbjct: 358 MNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 389


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 197/400 (49%), Gaps = 6/400 (1%)

Query: 174 TEVFVI--LMRRFASARMVKKAIEVLD-EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
             V VI  L++    A+ V +A ++L   M ++GC PD   +  +++   +   V++A  
Sbjct: 123 VNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYN 182

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           LF EM ++   P++  +T+++ G CK   +  AK V  QM D G +PD   YN L+ GY 
Sbjct: 183 LFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYL 242

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
             GK  +  ++L+EM   G +P+  +Y +L+  LC+  +  EA   F  M R G + DV 
Sbjct: 243 STGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVA 302

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            Y  L+ G+     +   +  LD M+  G+ PN+  +  +  A+ KK  +EE + +  +M
Sbjct: 303 IYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKM 362

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           R+ G  PDV ++  +I   CKLG + +AV  +N+M    ++P    F  +V+G    G  
Sbjct: 363 RQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKW 422

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A E F E++ +G+     +     L+ +L    +V  A+ +   ++  G   NV ++ 
Sbjct: 423 EKAEELFFEVLDQGICVDAVF--FNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYN 480

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             +      G + EA      M+   + P   T+  L+RG
Sbjct: 481 TLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRG 520



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 199/451 (44%), Gaps = 47/451 (10%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     Y  +I  L K +       + ++M  R  KP       +  L+  + S   
Sbjct: 194 PNVV----TYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPD---NGTYNCLIHGYLSTGK 246

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            K+ +++L+EM  +G EPD   +  LLD LCKN   +EA   FD M R+  KP +  +  
Sbjct: 247 WKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAI 306

Query: 249 LLYGWCKEGKLVE-----------------------------------AKYVLVQMKDAG 273
           LL+G+  +G L E                                   A ++  +M+  G
Sbjct: 307 LLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQG 366

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             PD+V +  L+    ++G++ DA     +M  +G  PN   ++ L+  LC + K E+A 
Sbjct: 367 LSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAE 426

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F E+   G   D V + TL+   C   ++     ++D MI+ G+ PN ++Y  ++  H
Sbjct: 427 ELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGH 486

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
                ++E  +L+  M   G  P+   Y +++R  CK   + +A +++ EM    ++P  
Sbjct: 487 CLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVV 546

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  ++HG    G   EA E +  M+     +     T   +LN L +   V+ A  ++
Sbjct: 547 ATYNTILHGLFQTGRFSEANELYLNMINSR--TKCDIYTYNIILNGLCKNNFVDEAFKMF 604

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             + +K  +L+   + I I +L   G  ++A
Sbjct: 605 RRLCSKDPQLDSVTFNIMIGALLKGGRKEDA 635



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 182/400 (45%), Gaps = 39/400 (9%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F I+   +A   M+++A+ + ++M + G  PD   FG L+DALCK   V +A   F++M
Sbjct: 338 IFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQM 397

Query: 236 -RERFKPSLRHFTSLLYG------W-----------------------------CKEGKL 259
             E   P++  F+SL+YG      W                             C EG++
Sbjct: 398 INEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRV 457

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +EA+ ++  M   G  P+++ YN L++G+   G++ +A +LL  M   G  PN  +YT+L
Sbjct: 458 MEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTIL 517

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++  C+  ++++A   F EM   G    V TY T++ G  ++ +     E+  +MI    
Sbjct: 518 LRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRT 577

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             +  TY  I+    K   ++E  ++   +       D   +N++I    K G  ++A++
Sbjct: 578 KCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMD 637

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  + A  L P   ++ ++    + +G L E    F  M   G  +AP    L AL+  
Sbjct: 638 LFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG--TAPNSHMLNALVRR 695

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           LL    +  A      +  K   L     ++ I SL+S G
Sbjct: 696 LLHRGDISRAGVYLYKLDEKNFSLEASTTSMLI-SLYSRG 734



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 169/390 (43%), Gaps = 45/390 (11%)

Query: 224 SVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEG------KLVEAKYVLVQMKDAGFEP 276
            + EA KLFDE+    +P S+R F  LL    + G      ++V     + +   +   P
Sbjct: 29  GLDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAP 88

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN--- 333
           +   Y+ L+  + +MG++   F     + + G   N    + L++ LC  ++++EA    
Sbjct: 89  NACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDIL 148

Query: 334 ---------------------------------RAFVEMERSGCEADVVTYTTLISGFCK 360
                                              F+EM   G   +VVTYTT+I G CK
Sbjct: 149 LLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCK 208

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           ++ +DR   +   MI RG+ P+  TY  ++  +    + +E V+++ EM   G  PD   
Sbjct: 209 AQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCIT 268

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y +++   CK G  +EA   ++ M    + P    + +++HG+  +G L E   +   MV
Sbjct: 269 YALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMV 328

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           G G+  +P       +  +  +   +E A  +++ +  +G   +V ++   I +L   G 
Sbjct: 329 GNGV--SPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGR 386

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V +A      M++  V P    F+ L+ GL
Sbjct: 387 VDDAVLQFNQMINEGVTPNIFVFSSLVYGL 416



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 129/279 (46%), Gaps = 3/279 (1%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PNA +Y++LI   CRM ++E    AF  + ++G   +V+  + L+ G C ++++D   +I
Sbjct: 88  PNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDI 147

Query: 371 -LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
            L  M + G  P+ + Y  ++    ++ ++E+   L  EM   G  P+V  Y  VI   C
Sbjct: 148 LLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLC 207

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K   +  A  V+ +M    + P   ++  ++HG+L  G   E  +  +EM   GL   P 
Sbjct: 208 KAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGL--EPD 265

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T   LL+ L +  +   A+  +  +  KG + +V  + I +H   + G + E  S+  
Sbjct: 266 CITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLD 325

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            M+   V P    F  +     K    + A  I  K+R+
Sbjct: 326 LMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQ 364


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 194/378 (51%), Gaps = 11/378 (2%)

Query: 141 YRALIKSLSK---MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y +LI +  K    +K  AV+ +M +    +P    T  F +LM  F  A+ V    ++ 
Sbjct: 92  YNSLIDAFVKAGYTQKALAVYRVMGQ-SGLRPD---TYTFNVLMNAFKKAKRVDSVWKLF 147

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
           +EM    C P+   +  L+DA+CK   V++A K+F +M+ R  +P++  +TS++ G  K 
Sbjct: 148 EEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKS 207

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G + +A ++  +M   G     VVYN+L+ G  + G+   A +L +EM  KG  P+  ++
Sbjct: 208 GHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTF 267

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T L+  L    +  EA R F E    GC  DV  Y  LI   CKS+++D  +EI   + +
Sbjct: 268 TSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEE 327

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G++P+  T+  +M    K   + +   L+G+M++ GC PDV+ YN +I    K G ++E
Sbjct: 328 DGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEE 387

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +  EM++    P   ++  ++      G + +A   F+E+  +G  +   Y T   +
Sbjct: 388 AGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTVTYNT---I 444

Query: 497 LNSLLRAQKVEMAKDVWS 514
           LN L  A +V+ A  +++
Sbjct: 445 LNGLCMAGRVDEAYKLFN 462



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 198/448 (44%), Gaps = 37/448 (8%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           + Y+++ W   Q   V S      L++ L   R+F     ++ E+ K +  ++   +F+ 
Sbjct: 1   MAYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSR-YILQPRIFIE 59

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L R +ASA +++K++E L  M  + C      +  L+DA  K    ++A  ++  M +  
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQ-- 117

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
                                           +G  PD   +N L++ + +  ++   ++
Sbjct: 118 --------------------------------SGLRPDTYTFNVLMNAFKKAKRVDSVWK 145

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L +EM+ + C PN  +Y++LI A+C+   +E+A + F++M+  GC  ++ TYT++I G  
Sbjct: 146 LFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLG 205

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           KS  +D+ + + + M   G++  ++ Y  ++    +    +   +L  EM   G  PD  
Sbjct: 206 KSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHV 265

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +  ++      G   EA  ++ E      +   + + V++        L EA E F E+
Sbjct: 266 TFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGEL 325

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              GL+  P   T  AL++ L ++ ++  A  +   +   GC  +V  +   I  L  +G
Sbjct: 326 EEDGLV--PDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSG 383

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLM 567
            V+EA    L+M      P   T+  L+
Sbjct: 384 RVEEAGQLLLEMQSLGYEPDVVTYNTLI 411



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 152/289 (52%), Gaps = 12/289 (4%)

Query: 110 VINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE- 167
           +I+  G +G++   ++++        V +  VY +LI  L +  +  A   L  EM  + 
Sbjct: 200 MIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKG 259

Query: 168 -KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
            +P  +T   F  L+     A    +A  +  E    GC  D  ++  L+D LCK+  + 
Sbjct: 260 LQPDHVT---FTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLD 316

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           EA ++F E+ E    P +  F +L+ G CK G++ +A  +L  MK AG  PD+ VYN L+
Sbjct: 317 EAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLI 376

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  + G++ +A +LL EM+  G +P+  +Y  LI   C+  ++E+A R F E+   G  
Sbjct: 377 DGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF- 435

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQR---GIL-PNQLTYLHIM 390
           A+ VTY T+++G C + ++D  Y++ + M Q    G++ P+ +TY  ++
Sbjct: 436 ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 139 DVY--RALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           DVY   AL+  L K  +    + L+ +M++    P +      +  +R+  S R V++A 
Sbjct: 333 DVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRK--SGR-VEEAG 389

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
           ++L EM   G EPD   +  L+D  CK   +++A +LF+E+  +   +   + ++L G C
Sbjct: 390 QLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTVTYNTILNGLC 449

Query: 255 KEGKLVEAKYVLVQMK----DAGFEPDIVVYNNLLSGYAQMG 292
             G++ EA  +   MK    D   +PD V Y  LL+G  Q G
Sbjct: 450 MAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAG 491


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 226/479 (47%), Gaps = 40/479 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN +    VY+ LI +LS+  +      L+EEM      +   + F  ++        + 
Sbjct: 251 PNSI----VYQTLIHALSQKNQVSEALKLLEEMFVMGC-MPDVQTFNDVIHGLCKVNKIH 305

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF------------------- 232
            A +++D M   G  PD   +G LL  LC+   + EA K+                    
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYV 365

Query: 233 --DEMRER------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
              +++E             F+P +  +  L++G CKEG L  A+ ++ +M   G EP++
Sbjct: 366 MSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNV 425

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           + Y  L++G  + G + +A  +L EM  +G   N+  Y  LI ALCR EK+  A     E
Sbjct: 426 ITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSE 485

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M   GC+ D+ TY +LI G CK  +ID  + +  +M+  G + N +TY  ++ A  ++  
Sbjct: 486 MCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGA 545

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            ++ + L+ +M   GC  D   YN +I+  CK+G +++ + ++ +M    L   T S  +
Sbjct: 546 FQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNI 605

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           M++G    G +  A E+ ++ + RG +  P   T  ++LN L +  +++ A +++  +  
Sbjct: 606 MINGLCKVGKVDNAFEFLRDAINRGFV--PDIVTYNSVLNGLCKVGRIKEALNLFDRLQV 663

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
           +G   + + +  +I      G V +AC +    ++   +P   T+  L+  L K  N++
Sbjct: 664 EGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQE 722



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 214/444 (48%), Gaps = 12/444 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q  Y H++DVY   I  L  + KF  +  L+ +M KE+  +    +F+I+M+ +  A   
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQM-KEEGIVFRESIFMIIMKHYGKAGQP 163

Query: 191 KKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTS 248
            +AI +L +M   Y CEP    +  +L+ L   +  + A  +F D + +   P++  F  
Sbjct: 164 GQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGI 223

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   C   ++  A  +L  M   G  P+ +VY  L+   +Q  ++++A +LL+EM   G
Sbjct: 224 VMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMG 283

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  ++  +I  LC++ K+ +A +    M   G   D +TY  L+ G C+  K++   
Sbjct: 284 CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEAR 343

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE-MRKIGCVPDVSNYNVVIRL 427
           +IL  +      PN      ++  +    +L+E    + E M   G  PD+  YN+++  
Sbjct: 344 KILIKI----PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHG 399

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LS 486
            CK G L  A ++ NEM      P   ++ ++V+G    G L EA     EM  RGL ++
Sbjct: 400 LCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTIN 459

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +  Y     L+ +L R +KV +A ++ S + TKGC+ +++ +   I+ L     + EA  
Sbjct: 460 SVIY---NCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFR 516

Query: 547 YCLDMMDADVMPQPDTFAKLMRGL 570
              +M+    +    T+  L+  L
Sbjct: 517 LFHNMLLDGAVANNVTYNTLIHAL 540



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 147/318 (46%), Gaps = 8/318 (2%)

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANS 315
           GK      +L+QMK+ G      ++  ++  Y + G+   A  LL +MR    C+P   S
Sbjct: 126 GKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKS 185

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y ++++ L      + A   F +M   G    V T+  ++   C   ++D    +L  M 
Sbjct: 186 YDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMT 245

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G +PN + Y  ++ A  +K ++ E ++L+ EM  +GC+PDV  +N VI   CK+ ++ 
Sbjct: 246 KHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH 305

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  + + M      P   ++  ++HG    G L EA +   +      +  P    L  
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIK------IPCPNNAILNT 359

Query: 496 LLNSLLRAQKVEMAKDVWS-CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           L+N  + + +++ A+   +  ++  G + +++ + I +H L   G +  A     +M   
Sbjct: 360 LINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 555 DVMPQPDTFAKLMRGLKK 572
              P   T+A L+ GL K
Sbjct: 420 GCEPNVITYAILVNGLCK 437



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 41/292 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN +     Y  L+  L K         ++ EM   +   I + ++  L+        V
Sbjct: 422 EPNVI----TYAILVNGLCKAGLLEEAGLVLHEM-SARGLTINSVIYNCLICALCRKEKV 476

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--------------- 235
             A+ +L EM   GC+PD F +  L+  LCK   + EA +LF  M               
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 236 ------RERFKPSLRHFTSLLY---------------GWCKEGKLVEAKYVLVQMKDAGF 274
                 R  F+ +L     +L+                +CK G + +   +  QM   G 
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
             D +  N +++G  ++GK+ +AFE L++   +G  P+  +Y  ++  LC++ +++EA  
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            F  ++  G   D  TY T IS  CK   ++         I+ G +P+ LT+
Sbjct: 657 LFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTW 708



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 3/184 (1%)

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL-SPGTDSFVVMVHG 462
           +L+ +M++ G V   S + ++++   K G+  +A+ +  +M A  L  P   S+ +++  
Sbjct: 133 KLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEI 192

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
            +   C   A   F +M+ +G+  +P   T   ++ +L    +V+ A  +   +   GC 
Sbjct: 193 LVTGNCPQVATNVFYDMLSKGV--SPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCV 250

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N   +   IH+L     V EA     +M     MP   TF  ++ GL K+     A ++
Sbjct: 251 PNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKL 310

Query: 583 TEKV 586
            +++
Sbjct: 311 VDRM 314


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 225/481 (46%), Gaps = 25/481 (5%)

Query: 109 RVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY----------------RALIKSLSKMR 152
           R++N     G + YR  + A  +  +V + +++                 +L+ +  +  
Sbjct: 118 RMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRD 177

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212
             G  + + E+M KE+     +  + IL+     A  +++A ++  EM + GC+P    +
Sbjct: 178 DLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTY 237

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
             L+ A C      +A K+ DEM  +   P++  +T L+   C+EGK+ EA  V  +M  
Sbjct: 238 TVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLK 297

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G  P I+ +N L++GY + G +  AF+LL  M +  C PN  +Y  L++ LCR+ K   
Sbjct: 298 HGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSK--- 354

Query: 332 ANRAFVEMER---SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           + +AF+ + R   +G   D VTY  L+ GFCK  +++  + I +SM   G+ P+  T+  
Sbjct: 355 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTA 414

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    K   LE+   ++G M K G   D   +  +I   CK+G+ K+   ++  M    
Sbjct: 415 LIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENR 474

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
                 +F   +        L EA     +M+  GL+  P   T   L+    RA +  +
Sbjct: 475 CLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLV--PSVVTHTILIEGHCRAGETAL 532

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           +  +   +   GC  NVY +TI I+ L +NG V+EA +    M    V P   T+A L++
Sbjct: 533 SLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVK 592

Query: 569 G 569
            
Sbjct: 593 A 593



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 209/438 (47%), Gaps = 45/438 (10%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           S +PN V     Y  LI  L +  +    + L +EM ++  Q  +T  + +L++      
Sbjct: 194 SCRPNSV----TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ-PSTRTYTVLIKAKCDIG 248

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
           M  KA+++LDEM    C P+   +  L+D LC+   ++EA  +F +M +    P +  F 
Sbjct: 249 MTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFN 308

Query: 248 SLLYGWCKEGKLVEAKYVLVQMK-----------------------------------DA 272
           +L+ G+CKEG +V A  +L  M+                                   D 
Sbjct: 309 ALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDN 368

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  PD V YN L+ G+ + G++  AF +   M   G +P+  ++T LI  LC++ ++E+A
Sbjct: 369 GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 428

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKI-DRCYEILDSMIQRGILPNQLTYLHIML 391
           N     M + G   D VT+T LI G CK  K  D C+ + ++M++   L    T+   + 
Sbjct: 429 NGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCF-LFENMVENRCLTTAHTFNCFLD 487

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K  +L E   ++G+M K G VP V  + ++I   C+ GE   ++ +   M+ A  SP
Sbjct: 488 ALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSP 547

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++ ++++G    G + EA      M   G+  +P + T   L+ + ++A +++ A  
Sbjct: 548 NVYTYTIIINGLCNNGRVEEAETILFSMSSFGV--SPNHFTYAVLVKAHVKAGRLDRAFQ 605

Query: 512 VWSCIVTKGCELNVYAWT 529
           + S +V  GC+ N + ++
Sbjct: 606 IVSTMVKNGCQPNSHIYS 623



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 140/538 (26%), Positives = 236/538 (43%), Gaps = 31/538 (5%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFG----AV 157
           + P L  ++I    +   LG R++ W  +Q +Y +  D    L+  L     FG    AV
Sbjct: 1   MTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKAV 60

Query: 158 WALMEEMRKEKPQLI--------TTEV--------FVILMRRFASARMVKKAIEVLDEMP 201
             L++E    +  ++         TE+        +  L+   A   M   A  V   M 
Sbjct: 61  VLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMV 120

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLF--DEMRERFKPSLRHFTSLLYGWCKEGKL 259
             G       +  +++ALCKN  V +AA++F    +R  F       TSL+   C+   L
Sbjct: 121 NEGFVLGGIDYRTVVNALCKNGFV-QAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDL 179

Query: 260 VEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
            EA  V  +M K+    P+ V Y+ L+ G  + G++ +AF+L +EM  KGC P+  +YTV
Sbjct: 180 GEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTV 239

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI+A C +   ++A +   EM    C  +V TYT LI   C+  KI+    +   M++ G
Sbjct: 240 LIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 299

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P  +T+  ++  + K+  +    +L+  M K  C P++  YN ++   C++ +  +A 
Sbjct: 300 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 359

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   +    L P   ++ ++V GF  +G L  A   F  M   GL   P   T  AL++
Sbjct: 360 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL--EPDGFTFTALID 417

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +  ++E A  +   +V KG  L+   +T  I      G  K+ C    +M++   + 
Sbjct: 418 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 477

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA-----AERQITFKMYKRRGERDLKEK 611
              TF   +  L K Y    A  +  K+ K           I  + + R GE  L  K
Sbjct: 478 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 535



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 144/327 (44%), Gaps = 6/327 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI    K     + + L+  M K   KP + T   +  LM          KA  +L 
Sbjct: 307 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT---YNELMEGLCRVSKSYKAFLLLR 363

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            +   G  PD   +  L+D  CK   +  A  +F+ M     +P    FT+L+ G CK G
Sbjct: 364 RVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLG 423

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  +L  M   G   D V +  L+ G+ ++GK  D   L + M    C   A+++ 
Sbjct: 424 RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 483

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             + AL +  K+ EAN    +M + G    VVT+T LI G C++ +     ++L+ M Q 
Sbjct: 484 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQA 543

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  I+        +EE   ++  M   G  P+   Y V+++   K G L  A
Sbjct: 544 GCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRA 603

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFL 464
             + + M      P +  +  ++ GF+
Sbjct: 604 FQIVSTMVKNGCQPNSHIYSALLSGFV 630



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 168/384 (43%), Gaps = 16/384 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + ALI  L K+ +      ++  M K+   L     F  L+         K    + + M
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEV-TFTALIDGHCKIGKAKDVCFLFENM 470

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
            +  C      F C LDAL K+  + EA A L   M+    PS+   T L+ G C+ G+ 
Sbjct: 471 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGET 530

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             +  +L +MK AG  P++  Y  +++G    G++ +A  +L  M   G  PN  +Y VL
Sbjct: 531 ALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVL 590

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS------RKIDRCYEILDS 373
           ++A  +  +++ A +    M ++GC+ +   Y+ L+SGF  S      R +    ++   
Sbjct: 591 VKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 650

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
            +      N     H+     +  +++  +++  E++K G VP    YN ++   CK G 
Sbjct: 651 SLSSEENDNNCLSSHVF----RLMDVDHALKIRDEIKKCG-VPTEDLYNFLVVGLCKEGR 705

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           + EA  +  +M    L P      ++ H    + C  + C  F ++V       P + + 
Sbjct: 706 IIEADQLTQDMVKHGLFPDKAISSIIEH--YCKTCKYDNCLEFMKLVLDNKF-VPSFASY 762

Query: 494 KALLNSLLRAQKVEMAKDVWSCIV 517
             +++ L    +V+ A+ + S +V
Sbjct: 763 CWVIHGLRNEGRVQEAQKLVSDLV 786



 Score = 39.3 bits (90), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V  A+++ DE+ K G  P E ++  L+  LCK   + EA +L  +M +      +  +S+
Sbjct: 672 VDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSI 730

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           +  +CK  K       +  + D  F P    Y  ++ G    G++ +A +L+ ++ R
Sbjct: 731 IEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 787


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 192/390 (49%), Gaps = 12/390 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y A+I  L K  +      L+ +M K K +     ++  ++      R V
Sbjct: 202 QPDLV----TYGAVINGLCKRGEPDLALNLLNKMEKGKIE-ADVVIYSTVIDSLCKYRHV 256

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  PD F +  L+  LC      +A++L  +M ER   P++  F SL
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSL 316

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGKL+EA+ +  +M     +P+IV YN+L++G+    ++ +A ++   M  K C
Sbjct: 317 IDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y  LI   C+ +K+ +    F +M R G   + VTYTTLI GF ++   D    
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM 436

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ PN +TY  ++    K  +LE+ + +   ++K    PD+  YN++    C
Sbjct: 437 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMC 496

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++++  +++  +    + P   ++  M+ GF  +G   EA   F +M   G L  P 
Sbjct: 497 KAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPL--PD 554

Query: 490 YGTLKALLNSLLR----AQKVEMAKDVWSC 515
            GT   L+ + LR    A   E+ K++ SC
Sbjct: 555 SGTYNTLIRAHLRDGDKAASAELIKEMRSC 584



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 202/429 (47%), Gaps = 12/429 (2%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKA 193
           H+   Y  +I  L +  +     A++ +M K    P ++T      L+  F     + +A
Sbjct: 98  HNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNS---LLNGFCHGNRISEA 154

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYG 252
           + ++D+M + G +PD   F  L+  L +++   EA  L + M  +  +P L  + +++ G
Sbjct: 155 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CK G+   A  +L +M+    E D+V+Y+ ++    +   + DA  L  EM  KG  P+
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y+ LI  LC   +  +A+R   +M       +VVT+ +LI  F K  K+    ++ D
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MIQR I PN +TY  ++      + L+E  ++   M    C+PDV  YN +I   CK  
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAK 394

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           ++ + + ++ +M    L   T ++  ++HGF        A   FK+MV  G+   P   T
Sbjct: 395 KVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV--HPNIMT 452

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA----CSYC 548
              LL+ L +  K+E A  V+  +     E ++Y + I    +   G V++     CS  
Sbjct: 453 YNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLS 512

Query: 549 LDMMDADVM 557
           L  +  DV+
Sbjct: 513 LKGVKPDVI 521



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 211/461 (45%), Gaps = 5/461 (1%)

Query: 137 SYDVYRALIKSLSKMR-KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           SYD YR  +   + +  K      L  EM K +P     E F  L+   A  +     I 
Sbjct: 28  SYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVE-FSKLLSAIAKMKKFDLVIS 86

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
             ++M   G   + + +  +++ LC+ S +  A  +  +M +  + PS+    SLL G+C
Sbjct: 87  FGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFC 146

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              ++ EA  ++ QM + G++PD V +  L+ G  Q  K ++A  L++ M  KGC P+  
Sbjct: 147 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 206

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y  +I  LC+  + + A     +ME+   EADVV Y+T+I   CK R +D    +   M
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             +GI P+  TY  ++          +   L+ +M +    P+V  +N +I    K G+L
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  +++EM   S+ P   ++  +++GF     L EA + F  MV +  L  P   T  
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL--PDVVTYN 384

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+N   +A+KV    +++  +  +G   N   +T  IH  F       A      M+  
Sbjct: 385 TLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD 444

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V P   T+  L+ GL K    + A  + E ++K   E  I
Sbjct: 445 GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDI 485



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 170/372 (45%), Gaps = 45/372 (12%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I SL K R       L  EM  +  +P + T    +  +  +        A  +L
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRW---SDASRLL 298

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M +    P+   F  L+DA  K   + EA KLFDEM +R   P++  + SL+ G+C  
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-------- 308
            +L EA+ +   M      PD+V YN L++G+ +  K+ D  EL ++M R+G        
Sbjct: 359 DRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTY 418

Query: 309 ------------CD---------------PNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                       CD               PN  +Y  L+  LC+  K+E+A   F  +++
Sbjct: 419 TTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQK 478

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           S  E D+ TY  +  G CK+ K++  +++  S+  +G+ P+ + Y  ++    KK   EE
Sbjct: 479 SKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEE 538

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV--- 458
              L  +M++ G +PD   YN +IR   + G+   +  +  EM +   +    ++ +   
Sbjct: 539 AYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTD 598

Query: 459 MVH-GFLGQGCL 469
           M+H G L +G L
Sbjct: 599 MLHDGRLDKGFL 610


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 202/441 (45%), Gaps = 51/441 (11%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +L+  L++   F  +  LME+M +   +P ++T   F IL+      R V  A+EVL++M
Sbjct: 310 SLLTGLAREGNFNRMNELMEKMVEMDIQPNVVT---FGILINHMCKFRRVDDALEVLEKM 366

Query: 201 P--------KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLL 250
                        EPD  ++  L+D LCK    +E   L + MR +    P    +  L+
Sbjct: 367 SGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLI 426

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+CK G++ + K +  +M   G  P++V  N L+ G  + G+++ A     E +R+G  
Sbjct: 427 DGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK 486

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            +A +YT LI A C +   E+A   F EM +SGC  D + Y TLISGF ++ ++     +
Sbjct: 487 GDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFV 546

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  + + GI P+ + Y  ++    +  +     E++ EM + G  PD   YN +I  A K
Sbjct: 547 LAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASK 606

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+LK A  V  +M  A + P   ++  +++ +   G   EA E FK+M           
Sbjct: 607 NGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDM----------- 655

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
              KA       A KV                 N   + I I+SL  N  VK A S   D
Sbjct: 656 ---KA-------ASKVPP---------------NTVIYNILINSLCKNNKVKSAVSLMED 690

Query: 551 MMDADVMPQPDTFAKLMRGLK 571
           M    V P   T+  + +GL+
Sbjct: 691 MKIWGVTPNTTTYNAIFKGLR 711



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 187/399 (46%), Gaps = 13/399 (3%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
            S +P+ V    +Y  LI  L K+ +      LME MR +K     T  +  L+  F  A
Sbjct: 377 VSVEPDVV----IYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKA 432

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             ++K  E+ DEM K G  P+      L+  +C+   V  A   F E + R  K     +
Sbjct: 433 GEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTY 492

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T+L+  +C      +A  +  +M  +G  PD +VY  L+SG++Q G+M DA  +L E+++
Sbjct: 493 TALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKK 552

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P+   Y  LI   CR  K         EME +G + D +TY TLI+   K+  +  
Sbjct: 553 LGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKF 612

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVI 425
             +++  MI+ G++P   TY  ++ A+       E +E+  +M+    V P+   YN++I
Sbjct: 613 AQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILI 672

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK  ++K AV++  +M+   ++P T ++  +  G   +  L +  E+   M+     
Sbjct: 673 NSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHA-- 730

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             P Y T++ L   L    ++E  K         GCE++
Sbjct: 731 CNPDYITMEILTEWLSAVGEIERLKK-----FVAGCEVS 764



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 177/422 (41%), Gaps = 30/422 (7%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           +T      L+R    + +V++++ + +++       + ++    L  L ++  VK+A K+
Sbjct: 155 LTVNAASFLLRASGRSELVEESLILFNDLDP--SVKNTYLRNVWLSILLRSGRVKDALKV 212

Query: 232 FDEMRERFKPSLRH---------FTSLLYGWCKEGKLVEAKYVLVQMK--DAGFEPDIVV 280
            DEM E    S            F+ LL     E  L E + V + +K  + G       
Sbjct: 213 IDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFW 272

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR---MEKMEEANRAFV 337
              L++   +  K    ++L  EM + G    + +   L+  L R     +M E     V
Sbjct: 273 MGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMV 332

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM--------IQRGILPNQLTYLHI 389
           EM+    + +VVT+  LI+  CK R++D   E+L+ M        I   + P+ + Y  +
Sbjct: 333 EMD---IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTL 389

Query: 390 MLAHEKKEELEECVELMGEMR-KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           +    K    +E + LM  MR + GC PD   YN +I   CK GE+++   +++EM    
Sbjct: 390 IDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEG 449

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           ++P   +   +V G    G +  A  +F E   RG+       T  AL+N+       E 
Sbjct: 450 VAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGM--KGDAVTYTALINAFCNVNNFEK 507

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A ++++ ++  GC  +   +   I      G + +A     ++    + P    +  L+ 
Sbjct: 508 AMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIG 567

Query: 569 GL 570
           G 
Sbjct: 568 GF 569



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/440 (20%), Positives = 178/440 (40%), Gaps = 34/440 (7%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPD-----EFVFGCLLD-ALCKNSSVKEAA 229
           +F  + RR  S+    K +  L         PD      + F  + + A C+  S    +
Sbjct: 85  LFYQITRRLPSSSQALKFLNYLQN--NSPSSPDTQSLLSYTFQAIFELAFCEPDSNANLS 142

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +L+   +E   P   +  S L       +LVE   +L    D   + +  + N  LS   
Sbjct: 143 RLYKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDLDPSVK-NTYLRNVWLSILL 201

Query: 290 QMGKMTDAFELLKEM----RRKGCDPNANSYTVLIQALCRMEKMEE--ANRAFVEMERSG 343
           + G++ DA +++ EM        C PN  +  +L   L + E+ EE  +    V +    
Sbjct: 202 RSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVNLVLKF 261

Query: 344 CEADVVTYT----TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            E  V+  +     LI+  C++RK +R +++   MI+ G +        ++    ++   
Sbjct: 262 GEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNF 321

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV-- 457
               ELM +M ++   P+V  + ++I   CK   + +A+ V  +M     S G    V  
Sbjct: 322 NRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEP 381

Query: 458 -VMVHGFLGQGCLIEACEYFKEMVGRGLLS--------APQYGTLKALLNSLLRAQKVEM 508
            V+++  L  G     C+  ++  G GL+         AP   T   L++   +A ++E 
Sbjct: 382 DVVIYNTLIDGL----CKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEK 437

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
            K+++  +  +G   NV      +  +   G V  A ++ ++     +     T+  L+ 
Sbjct: 438 GKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALIN 497

Query: 569 GLKKLYNRQIAAEITEKVRK 588
               + N + A E+  ++ K
Sbjct: 498 AFCNVNNFEKAMELFNEMLK 517



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 12/214 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    +  KF  V+ +++EM +   KP  IT    +    +    +  +K   V+ 
Sbjct: 562 YNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQK---VMR 618

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--ERFKPSLRHFTSLLYGWCKE 256
           +M K G  P    +G +++A C N +  EA ++F +M+   +  P+   +  L+   CK 
Sbjct: 619 KMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKN 678

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            K+  A  ++  MK  G  P+   YN +  G      +   FE +  M    C+P+  + 
Sbjct: 679 NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITM 738

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            +L + L  + ++E   + FV    +GCE    T
Sbjct: 739 EILTEWLSAVGEIERL-KKFV----AGCEVSSST 767


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 216/435 (49%), Gaps = 8/435 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  L+ +++KM+KF  V +L E M+  +   I+ +++   IL+  F     +  A+ VL 
Sbjct: 83  FNKLLSAIAKMKKFDLVISLGERMQNLR---ISYDLYSYNILINCFCRRSQLPLALAVLG 139

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K G EPD      LL+  C +  + +A  L D+M E  +KP    F +L++G     
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHN 199

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  ++ QM   G +PD+V Y  +++G  + G +  A  LLK+M +   + +   Y 
Sbjct: 200 KASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 259

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+ + +++A   F +ME  G   DV TY +LIS  C   +      +L +MI+R
Sbjct: 260 TIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIER 319

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +T+  ++ A  K+ +L E  +L  EM K    PD+  Y+ +I   C    L EA
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +++  M +    P   ++  ++ GF     + E  E F+EM  RGL+      T   L+
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV--TYNTLI 437

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L +A   +MA+ ++  +V+ G   ++  ++I +  L   G +++A      +  + + 
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 558 PQPDTFAKLMRGLKK 572
           P   T+  ++ G+ K
Sbjct: 498 PDIYTYNIMIEGMCK 512



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 211/446 (47%), Gaps = 15/446 (3%)

Query: 137 SYDVY--RALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKK 192
           SYD+Y    LI    +  +     A++ +M K   +P ++T      L+  +  ++ +  
Sbjct: 112 SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS---LLNGYCHSKRISD 168

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+ ++D+M + G +PD   F  L+  L  ++   EA  L D+M +R  +P L  + +++ 
Sbjct: 169 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVN 228

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G +  A  +L +M+    E D+V+YN ++ G  +   + DAF L  +M  KG  P
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRP 288

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +Y  LI  LC   +  +A+R    M       +VVT++ LI  F K  K+    ++ 
Sbjct: 289 DVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 348

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D MI+R I P+  TY  ++      + L+E   +   M    C P+V  YN +I+  CK 
Sbjct: 349 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 408

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             ++E + ++ EM    L   T ++  ++ G    G    A + FK+MV  G+   P   
Sbjct: 409 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV--PPDII 466

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA----CSY 547
           T   LL+ L +  K+E A  V+  +     E ++Y + I I  +   G V++     CS 
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 548 CLDMMDADVMPQPDTFAKLMR-GLKK 572
            L  +  +V+      +   R GLK+
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKE 552



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 193/390 (49%), Gaps = 12/390 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y A++  L K        +L+++M K K +     ++  ++      + +
Sbjct: 217 QPDLV----TYGAVVNGLCKRGDIDLALSLLKKMEKGKIE-ADVVIYNTIIDGLCKYKHI 271

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A  + ++M   G  PD F +  L+  LC      +A++L   M ER   P++  F++L
Sbjct: 272 DDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSAL 331

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGKLVEA+ +  +M     +PDI  Y++L++G+    ++ +A  + + M  K C
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y  LI+  C+ +++EE    F EM + G   + VTY TLI G  ++   D   +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           I   M+  G+ P+ +TY  ++    K  +LE+ + +   ++K    PD+  YN++I   C
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++++  +++  +    + P    +  M+ GF  +G   EA   F+EM   G L  P 
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL--PD 569

Query: 490 YGTLKALLNSLLR----AQKVEMAKDVWSC 515
            G    L+ + LR    A   E+ K++ SC
Sbjct: 570 SGCYNTLIRARLRDGDKAASAELIKEMRSC 599



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 185/395 (46%), Gaps = 3/395 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           AI +  EM +    P    F  LL A+ K         L + M+  R    L  +  L+ 
Sbjct: 64  AIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILIN 123

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +C+  +L  A  VL +M   G+EPDIV  ++LL+GY    +++DA  L+ +M   G  P
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 183

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  ++  LI  L    K  EA     +M + GC+ D+VTY  +++G CK   ID    +L
Sbjct: 184 DTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLL 243

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M +  I  + + Y  I+    K + +++   L  +M   G  PDV  YN +I   C  
Sbjct: 244 KKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNY 303

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G   +A  + + M    ++P   +F  ++  F+ +G L+EA + + EM+ R +   P   
Sbjct: 304 GRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIF 361

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L+N      +++ AK ++  +++K C  NV  +   I        V+E      +M
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               ++    T+  L++GL +  +  +A +I +K+
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 88/200 (44%), Gaps = 2/200 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ + L GEM +   +P +  +N ++    K+ +    +++   M+   +S    S+ 
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++++ F  +  L  A     +M+  G    P   TL +LLN    ++++  A  +   +V
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGY--EPDIVTLSSLLNGYCHSKRISDAVALVDQMV 177

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
             G + +   +   IH LF +    EA +    M+     P   T+  ++ GL K  +  
Sbjct: 178 EMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDID 237

Query: 578 IAAEITEKVRKMAAERQITF 597
           +A  + +K+ K   E  +  
Sbjct: 238 LALSLLKKMEKGKIEADVVI 257


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 199/426 (46%), Gaps = 16/426 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +++K L K R+F     +   M +    P + +   F IL+  F     VK+A++   
Sbjct: 230 YNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRS---FNILIGGFCRVGEVKEAVKFYK 286

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM      PD   F CL+    +   +  A     EM+     P    +T ++ G+C+ G
Sbjct: 287 EMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAG 346

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EA  V  +M   G  PD+V YN LL+G  +  ++ DA +LL EM  +G  P+  ++T
Sbjct: 347 SMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFT 406

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   CR    E A + F  + R     DVVTY +LI G C+   + +  E+ D M  R
Sbjct: 407 TLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAR 466

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            ILPN +TY  ++ +H +K ++E+    + EM K G +P++  YN +I+  C+ G +K+ 
Sbjct: 467 EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKG 526

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF----KEMVGRGLLSAPQYGTL 493
                +M   ++ P   +F  ++HG++ +  +  A   F    KEMV       P   T 
Sbjct: 527 QQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMV------RPDAVTY 580

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             ++N       ++ A  V+  +   G E + Y +   I+   + G+ K+A     +M+ 
Sbjct: 581 NMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIH 640

Query: 554 ADVMPQ 559
               P 
Sbjct: 641 RGFAPD 646



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 194/423 (45%), Gaps = 4/423 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I++  +        A  V+ EM K    PD      L+DA  +   V  A  L D M  R
Sbjct: 162 IMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANR 221

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             KP +  + S+L G CK  +  +AK V   M      PD+  +N L+ G+ ++G++ +A
Sbjct: 222 GLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEA 281

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +  KEM+ +   P+  S++ LI    R  +M+ A     EM+  G   D V YT +I G
Sbjct: 282 VKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           FC++  +     + D M+  G LP+ +TY  ++    K+  L +  +L+ EM + G  PD
Sbjct: 342 FCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPD 401

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  +  +I   C+ G  + A+ +++ +    L P   ++  ++ G   +G L +A E + 
Sbjct: 402 LCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWD 461

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           +M  R +L  P + T   L++S     +VE A      +V KG   N+  +   I     
Sbjct: 462 DMHAREIL--PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCR 519

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK-MAAERQIT 596
           +G+VK+   +   M   +V P   TF  L+ G  K  N   A  +   + K M     +T
Sbjct: 520 SGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVT 579

Query: 597 FKM 599
           + M
Sbjct: 580 YNM 582



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 173/395 (43%), Gaps = 19/395 (4%)

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP 241
           RR AS R      E++  +      P   VF  L+    ++   +EA + F  + +   P
Sbjct: 66  RRGASRR------EIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVP 119

Query: 242 SLRHFTSLLY------GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
                ++ L       GW     L +  Y LV   D+  E +    N ++  Y +  +  
Sbjct: 120 VPASASNALLAVLSRAGW---PHLAQEAYRLVLSSDS--EVNAYTLNIMVHSYCKTLEFD 174

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A  ++ EM ++   P+  ++ VLI A  R   ++ A      M   G +  +VTY +++
Sbjct: 175 GADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVL 234

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G CK R+ D+  E+  +M Q  + P+  ++  ++    +  E++E V+   EM+     
Sbjct: 235 KGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVT 294

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV +++ +I L  + GE+  A     EM+   L P    + +++ GF   G + EA   
Sbjct: 295 PDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             EMVG G L  P   T   LLN L +  ++  A+ + + +  +G   ++  +T  IH  
Sbjct: 355 RDEMVGFGCL--PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGY 412

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              G+ + A      ++   + P   T+  L+ G+
Sbjct: 413 CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGM 447



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 310 DPNANSYT--VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           D   N+YT  +++ + C+  + + A+    EME+     DVVT+  LI    ++  +D  
Sbjct: 152 DSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             ++DSM  RG+ P  +TY  ++    K    ++  E+   M +    PDV ++N++I  
Sbjct: 212 IALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGG 271

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++GE+KEAV  + EM+   ++P   SF  ++  F  +G +  A  Y +EM G GL+  
Sbjct: 272 FCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLV-- 329

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P       ++    RA  +  A  V   +V  GC  +V  +   ++ L     + +A   
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKL 389

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +M +  V P   TF  L+ G  +  N + A ++ + +
Sbjct: 390 LNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTL 428


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 213/421 (50%), Gaps = 6/421 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L+ ++SKM+K+  V  L E+M+    P  + T    IL+  F     +  A+  L +
Sbjct: 84  FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCT--CNILLNCFCRCSQLSLALSFLGK 141

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M K G EP    FG LL+  C+   V +A  +FD+M    +KP++  + +++ G CK  +
Sbjct: 142 MIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQ 201

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +  A  +L +M+  G  PD+V YN+L+SG    G+ +DA  ++  M ++   P+  ++  
Sbjct: 202 VDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNA 261

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI A  +  ++ EA   + EM R   + D+VTY+ LI G C   ++D   E+   M+ +G
Sbjct: 262 LIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG 321

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +TY  ++  + K +++E  ++L  EM + G V +   Y ++I+  C+ G+L  A 
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAE 381

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++  M    + P   ++ V++HG    G + +A     +M   G+       T   ++ 
Sbjct: 382 EIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGM--DADIVTYNIIIR 439

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            + +A +V  A D++  +  +G   +++ +T  +  L+  G  +EA +    M +  ++P
Sbjct: 440 GMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILP 499

Query: 559 Q 559
            
Sbjct: 500 N 500



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 207/450 (46%), Gaps = 7/450 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR ++++  +  K      L   M + +P L +   F  L+   +  +     I + ++M
Sbjct: 49  YREMLRNGIRFMKLDDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQM 107

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G   +      LL+  C+ S +  A     +M +   +PS+  F SLL G+C+  ++
Sbjct: 108 QMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRV 167

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A Y+  QM   G++P++V+YN ++ G  +  ++ +A +LL  M + G  P+  +Y  L
Sbjct: 168 YDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC   +  +A R    M +     DV T+  LI    K  ++    E  + MI+R +
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++        L+E  E+ G M   GC PDV  Y+++I   CK  +++  + 
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ EM    +   T ++ +++ G+   G L  A E F+ MV  G+   P   T   LL+ 
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV--HPNIITYNVLLHG 405

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L    K+E A  + + +   G + ++  + I I  +   G V +A      +    +MP 
Sbjct: 406 LCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPD 465

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             T+  +M G   LY + +  E     RKM
Sbjct: 466 IWTYTTMMLG---LYKKGLRREADALFRKM 492



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 184/426 (43%), Gaps = 58/426 (13%)

Query: 80  ILKKFHSRLPKLELALQHSGVVLRPGLTERVI------------NRCGDAGNLGYRYYMW 127
           IL     R  +L LAL   G +++ G    ++            +R  DA  + +   + 
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYM-FDQMVG 179

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFA 185
              +PN V    +Y  +I  L K ++      L+  M K+   P ++T   +  L+    
Sbjct: 180 MGYKPNVV----IYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVT---YNSLISGLC 232

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
           S+     A  ++  M K    PD F F  L+DA  K   V EA + ++EM R    P + 
Sbjct: 233 SSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIV 292

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++ L+YG C   +L EA+ +   M   G  PD+V Y+ L++GY +  K+    +L  EM
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            ++G   N  +YT+LIQ  CR  K+  A   F  M   G   +++TY  L+ G C + KI
Sbjct: 353 SQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI 412

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           ++   IL                                    +M+K G   D+  YN++
Sbjct: 413 EKALVIL-----------------------------------ADMQKNGMDADIVTYNII 437

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           IR  CK GE+ +A +++  +    L P   ++  M+ G   +G   EA   F++M   G+
Sbjct: 438 IRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGI 497

Query: 485 LSAPQY 490
           L    Y
Sbjct: 498 LPNECY 503



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 119/271 (43%), Gaps = 5/271 (1%)

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N + Y  +++   R  K++++   F  M +      +  ++ L+S   K +K D    + 
Sbjct: 45  NGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLW 104

Query: 372 DSMIQRGILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           + M   GI P+ L   +I+L    +  +L   +  +G+M K+G  P +  +  ++   C+
Sbjct: 105 EQMQMLGI-PHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCR 163

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              + +A+ ++++M      P    +  ++ G      +  A +    M   G+   P  
Sbjct: 164 GDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI--GPDV 221

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +L++ L  + +   A  + SC+  +    +V+ +   I +    G V EA  +  +
Sbjct: 222 VTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEE 281

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
           M+   + P   T++ L+ GL  +Y+R   AE
Sbjct: 282 MIRRSLDPDIVTYSLLIYGL-CMYSRLDEAE 311


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 221/474 (46%), Gaps = 36/474 (7%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-M 235
           F  L+   A  +     + +  +M  +G  PD +    ++++ C  + V  A  +  + +
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKIL 118

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +   +P    FT+L+ G C  GK+ EA  V  +M   GF+P++V Y  L++G  +  ++T
Sbjct: 119 KLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLT 178

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A  L  EM  KG  P+  +Y  LI ALC + + +       EM +S    +VV+   ++
Sbjct: 179 EALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVV 238

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
              CK  K+   ++++D MIQ G+ P+ +TY  +M  H  + E++E V++   M + GCV
Sbjct: 239 DALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCV 298

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +V +YN +I   CK+  + +A+ ++ EM    L P T ++  ++HG    G L +A   
Sbjct: 299 CNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIAL 358

Query: 476 FKEMVGRGLLS------------------APQYGTLKAL---------------LNSLLR 502
           F EMV  G +                   A     LKA+               ++ + R
Sbjct: 359 FNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCR 418

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           A  +E A+D++S +  +G + +V+   I I  L   G + EA     +M +   +    T
Sbjct: 419 AGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCT 478

Query: 563 FAKLMRGLKKLYNRQIAAEITEKV--RKMAAERQITFKMYKRRGERDLKEKAKK 614
           +  + +GL +      A ++ E++  R  +A+   T  + K   +  L +  K+
Sbjct: 479 YNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVKQ 532



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 192/403 (47%), Gaps = 10/403 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L++ L  + K G    + ++M  E  +P ++T   +  LM      R + +A+ +  
Sbjct: 129 FTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVT---YGTLMNGLCKDRQLTEALNLFS 185

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD F +  L+ ALC     K    L +EM + +  P++     ++   CKEG
Sbjct: 186 EMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEG 245

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  V+  M   G EPD+V Y  L+ G+    +M +A ++   M R GC  N  SY 
Sbjct: 246 KVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYN 305

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+++++++A   F EM R     + +TY+TLI G C   ++     + + M+  
Sbjct: 306 TLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVAC 365

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G +PN +TY  ++    K   L E + L+  +      PDV  YN+ I   C+ G+L+ A
Sbjct: 366 GQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAA 425

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTLKAL 496
            ++++ +    L P   +  +M+ G   +G L EA + F+EM   G L +   Y T+   
Sbjct: 426 RDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTIT-- 483

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              LL+  K   A  +   ++ +G   +V    + +  L  +G
Sbjct: 484 -QGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDG 525



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 207/436 (47%), Gaps = 6/436 (1%)

Query: 139 DVYR--ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           DVY    +I S   + +     +++ ++ K   Q   T  F  L+R       + +A++V
Sbjct: 90  DVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQ-PDTATFTTLVRGLCVVGKIGEALDV 148

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
            D+M   G +P+   +G L++ LCK+  + EA  LF EM  +   P +  + SL++  C 
Sbjct: 149 FDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCN 208

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             +      +L +M  +   P++V  N ++    + GK+T+A +++  M + G +P+  +
Sbjct: 209 LCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVT 268

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  L+   C   +M+EA + F  M R+GC  +VV+Y TLI+G+CK ++ID+   + + M 
Sbjct: 269 YAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMC 328

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           ++ ++PN +TY  ++        L++ + L  EM   G +P++  Y++++   CK   L 
Sbjct: 329 RQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLA 388

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA+ +   +E ++L P    + + + G    G L  A + F  +  RGL   P   T   
Sbjct: 389 EAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGL--QPDVWTHNI 446

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           ++  L +   ++ A  ++  +   GC  N   +      L  N     A     +M+   
Sbjct: 447 MIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARG 506

Query: 556 VMPQPDTFAKLMRGLK 571
                 T A L++ L 
Sbjct: 507 FSADVSTTALLVKMLS 522



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 137/295 (46%), Gaps = 2/295 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I  +  LL+  A+M   +    L K+M   G  P+  + T++I + C + +++ A   
Sbjct: 54  PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSV 113

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + D  T+TTL+ G C   KI    ++ D M+  G  PN +TY  +M    K
Sbjct: 114 LAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCK 173

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +L E + L  EM   G  PD+  YN +I   C L E K    + NEM  + + P   S
Sbjct: 174 DRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVS 233

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
             ++V     +G + EA +    M+  G+   P   T  AL++      +++ A  V+  
Sbjct: 234 LNIVVDALCKEGKVTEAHDVVDMMIQGGV--EPDVVTYAALMDGHCLRSEMDEAVKVFDM 291

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +V  GC  NV ++   I+       + +A     +M   +++P   T++ L+ GL
Sbjct: 292 MVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGL 346


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 225/461 (48%), Gaps = 12/461 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASAR 188
           +P+ V     +  LI  L    +      L++ M +   KP LIT    V          
Sbjct: 139 EPDTV----TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALV---NGLCLNG 191

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V  A+ ++D M + G +P+E  +G +L  +CK+     A +L  +M ER  K     ++
Sbjct: 192 KVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYS 251

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            ++ G CK+G L  A  +  +M+  GF+ DI++Y  L+ G+   G+  D  +LL++M ++
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              P+  +++ LI    +  K+ EA     EM + G   D VTYT+LI GFCK  ++D+ 
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +LD M+ +G  PN  T+  ++  + K   +++ +EL  +M   G V D   YN +I+ 
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+LG+L+ A  ++ EM +  + P   S+ +++ G    G   +A E F+++    +   
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM--E 489

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
              G    +++ +  A KV+ A D++  +  KG + +V  + I I  L   G + EA   
Sbjct: 490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLL 549

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              M +    P   T+  L+R      +   +A++ E++++
Sbjct: 550 FRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 161/331 (48%), Gaps = 7/331 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVL 197
           +Y  LI+      ++     L+ +M K K   IT +V  F  L+  F     +++A E+ 
Sbjct: 284 IYTTLIRGFCYAGRWDDGAKLLRDMIKRK---ITPDVVAFSALIDCFVKEGKLREAEELH 340

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM + G  PD   +  L+D  CK + + +A  + D M  +   P++R F  L+ G+CK 
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + +   +  +M   G   D V YN L+ G+ ++GK+  A EL +EM  +   P+  SY
Sbjct: 401 NLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSY 460

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC   + E+A   F ++E+S  E D+  Y  +I G C + K+D  +++  S+  
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ P+  TY  ++    KK  L E   L  +M + G  P+   YN++IR     G+  +
Sbjct: 521 KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATK 580

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +  +  E++    S    S V MV   L  G
Sbjct: 581 SAKLIEEIKRCGFSVDA-STVKMVVDMLSDG 610



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 197/440 (44%), Gaps = 10/440 (2%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD---EMPKYGCEPDEFVFGCLL 216
           L +EM + +P+       +   R F+     K+   VLD   +M   G   + +    ++
Sbjct: 59  LFQEMTRSRPR----PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114

Query: 217 DALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           +  C+   +  A     ++ +  ++P    F++L+ G C EG++ EA  ++ +M + G +
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P ++  N L++G    GK++DA  L+  M   G  PN  +Y  +++ +C+  +   A   
Sbjct: 175 PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMEL 234

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             +ME    + D V Y+ +I G CK   +D  + + + M  +G   + + Y  ++     
Sbjct: 235 LRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCY 294

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
               ++  +L+ +M K    PDV  ++ +I    K G+L+EA  +  EM    +SP T +
Sbjct: 295 AGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVT 354

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ GF  +  L +A      MV +G    P   T   L+N   +A  ++   +++  
Sbjct: 355 YTSLIDGFCKENQLDKANHMLDLMVSKG--CGPNIRTFNILINGYCKANLIDDGLELFRK 412

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +  +G   +   +   I      G ++ A     +M+   V P   ++  L+ GL     
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472

Query: 576 RQIAAEITEKVRKMAAERQI 595
            + A EI EK+ K   E  I
Sbjct: 473 PEKALEIFEKIEKSKMELDI 492



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 158/408 (38%), Gaps = 108/408 (26%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRR-----------------------------------KG 308
           L SG   + K  DA +L +EM R                                   KG
Sbjct: 44  LRSGIVDI-KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKG 102

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK----- 363
              N  + +++I   CR  K+  A  A  ++ + G E D VT++TLI+G C   +     
Sbjct: 103 IAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEAL 162

Query: 364 --IDRCYE----------------------------ILDSMIQRGILPNQLTYLHIMLAH 393
             +DR  E                            ++D M++ G  PN++TY  ++   
Sbjct: 163 ELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVM 222

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS----- 448
            K  +    +EL+ +M +     D   Y+++I   CK G L  A N++NEME        
Sbjct: 223 CKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 282

Query: 449 ------------------------------LSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
                                         ++P   +F  ++  F+ +G L EA E  KE
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ RG+  +P   T  +L++   +  +++ A  +   +V+KGC  N+  + I I+     
Sbjct: 343 MIQRGI--SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             + +       M    V+    T+  L++G  +L   ++A E+ +++
Sbjct: 401 NLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 203/422 (48%), Gaps = 19/422 (4%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           V L  GL  ++++R  D          WA     + HS D Y   +  L K +K+  +  
Sbjct: 147 VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 206

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            +E MR +K  L+T      +MRRFA A   ++A+ + D + ++G E +      LLD L
Sbjct: 207 FVERMRGDK--LVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 264

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           CK   V++A  +  +++    P+   F   ++GWCK  ++ EA + + +MK  GF P ++
Sbjct: 265 CKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVI 324

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  ++  Y Q  +    +E+L EM   G  PN+ +YT ++ +L   ++ EEA R    M
Sbjct: 325 SYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRM 384

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKKEE 398
           +RSGC+ D + Y  LI    ++ +++    +    M + G+  N  TY  ++  +   +E
Sbjct: 385 KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDE 444

Query: 399 LEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTD 454
            ++ +EL+ EM     C PDV  Y  ++R   K G++ E   +  EM      SL   T 
Sbjct: 445 EDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTY 504

Query: 455 SFVVMVHGFLGQGCLIEACEY----FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           +F++       + C    CE+    F+EM+ + +   P++ T   LL  + +    E A+
Sbjct: 505 TFLIQ------RLCRANMCEWAYCLFEEMISQDI--TPRHRTCLLLLEEVKKKNMHESAE 556

Query: 511 DV 512
            +
Sbjct: 557 RI 558



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN  H+++++   I    K  +       ++EM+    +P +I+   +  ++R +     
Sbjct: 286 PN-AHTFNIF---IHGWCKANRVEEALWTIQEMKGHGFRPCVIS---YTTIIRCYCQQFE 338

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
             K  E+L EM   G  P+   +  ++ +L      +EA ++   M R   KP    +  
Sbjct: 339 FIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNC 398

Query: 249 LLYGWCKEGKLVEAKYVL-VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L++   + G+L EA+ V  V+M + G   +   YN++++ Y    +   A ELLKEM   
Sbjct: 399 LIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 458

Query: 308 G-CDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEADVVTYTTLISGFCKSRKID 365
             C+P+ ++Y  L+++  +   + E  +   EM  +     D  TYT LI   C++   +
Sbjct: 459 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCE 518

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             Y + + MI + I P   T L ++L   KK+ + E  E +  + K
Sbjct: 519 WAYCLFEEMISQDITPRHRTCL-LLLEEVKKKNMHESAERIEHIMK 563



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 8/240 (3%)

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG   ++++Y + +  L + +K +   + FVE  R      + T   ++  F  + + + 
Sbjct: 179 KGHKHSSDAYDMAVDILGKAKKWDRM-KEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEE 237

Query: 367 CYEILDSMIQRGILPN--QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
              I D + + G+  N   +  L   L  EK+ E    V L     K    P+   +N+ 
Sbjct: 238 AVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQ---LKSHITPNAHTFNIF 294

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK   ++EA+    EM+     P   S+  ++  +  Q   I+  E   EM   G 
Sbjct: 295 IHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANG- 353

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            S P   T   +++SL   ++ E A  V + +   GC+ +   +   IH+L   G ++EA
Sbjct: 354 -SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEA 412


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 179/354 (50%), Gaps = 13/354 (3%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERF 239
           ++R+   R    A++  +E+P          +  L+  LCK     EA  L +EM     
Sbjct: 32  LQRWPGRRGCGAAVQDAEEVPT------AVTYNSLISGLCKAERASEAYDLLEEMVYSGC 85

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P +  +T+L+ G+CK  K  +A  V  Q+   GF PD+V Y+ L+ G  + G++ +A +
Sbjct: 86  IPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAID 145

Query: 300 LLKEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           L   M + G C PN  +Y  LI   CRM KM+EA      M  +G   DVVTYTTL++GF
Sbjct: 146 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 205

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK  ++D  Y++L+ M ++G+ PN +T+  +M    ++  L + V ++GEMR+  C P V
Sbjct: 206 CKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 265

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN ++   C++ +L+EA      +E     P   SF +M+ G        EA E  +E
Sbjct: 266 YTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEE 323

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIW 531
              R     P       +++ L R +KV+ A  V+  ++ + GC  N   ++ +
Sbjct: 324 --ARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 181/352 (51%), Gaps = 11/352 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP   H +  +R  ++     R  GA     EE+    P  +T   +  L+     A   
Sbjct: 18  QPKRCHVHGSHRRALQRWPGRRGCGAAVQDAEEV----PTAVT---YNSLISGLCKAERA 70

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A ++L+EM   GC PD F +  L+   CK+    +A ++F+++  R F+P +  ++ L
Sbjct: 71  SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 130

Query: 250 LYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           + G CKEG+L EA  +  +M K     P+ V YN+L+SG+ +MGKM +A  LL+ M   G
Sbjct: 131 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 190

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +YT L+   C++ ++++A     +M R G   +VVT+T+L+ G C+  ++    
Sbjct: 191 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAV 250

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            IL  M ++   P   TY  I+  + +  +LEE  + M  + ++ C P+V ++N++IR  
Sbjct: 251 HILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGL 308

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           CK+    EA+ +  E      +P    +  ++     +  + EAC  +++M+
Sbjct: 309 CKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKML 360



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 147/293 (50%), Gaps = 14/293 (4%)

Query: 306 RKGCD---------PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           R+GC          P A +Y  LI  LC+ E+  EA     EM  SGC  D+ TYTTLI+
Sbjct: 38  RRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLIT 97

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CV 415
           GFCKS+K D    + + ++ RG  P+ +TY  ++    K+  L+E ++L G M K G C+
Sbjct: 98  GFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCM 157

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+   YN +I   C++G++ EA+N+   M     SP   ++  +++GF     L +A + 
Sbjct: 158 PNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDL 217

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             +M  +GL   P   T  +L++ L R  ++  A  +   +  K C   VY +   +   
Sbjct: 218 LNQMTRKGL--TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGY 275

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
                ++EA  + L+ MD    P   +F  ++RGL K+     A E+ E+ R+
Sbjct: 276 CRVNQLEEARKFMLEEMDCP--PNVVSFNIMIRGLCKVNRSSEAMELVEEARR 326



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG 204
           +  L + RKF     ++EEM    P +++   F I++R         +A+E+++E  +  
Sbjct: 278 VNQLEEARKF-----MLEEM-DCPPNVVS---FNIMIRGLCKVNRSSEAMELVEEARRRR 328

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
           C PD  ++  ++D LC+   V EA +++ +M E
Sbjct: 329 CNPDVVMYTTVIDVLCREKKVDEACRVYRKMLE 361


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 213/449 (47%), Gaps = 8/449 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    K+        L EEM+    +P +IT   +  L+  F   + + +A E   
Sbjct: 170 YNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVIT---YNALINSFCKFKGMLRAFEFFR 226

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM     +P+   +  L+DALCK   ++ A K F +M R    P+   ++SL+   CK G
Sbjct: 227 EMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAG 286

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA  +  +M     + +IV Y  LL G  + G M +A EL + M + G  PN  +YT
Sbjct: 287 NLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYT 346

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    ++  M++A   F EM     + D++ + T++ G C   K++ C  I+  M + 
Sbjct: 347 ALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKES 406

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N + Y  +M A+ K     E + L+ EMR +G    V  +  +I   CK G ++EA
Sbjct: 407 GIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEA 466

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +  +  M    L P    +  ++ G     C+ +A + F EM  + ++  P      A++
Sbjct: 467 IYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMI--PDKIAYTAMI 524

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  L+    + A ++ + ++  G EL++YA+T  +  L   G V++A  +  +M+   ++
Sbjct: 525 DGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGII 584

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           P      +L+R   +L N   A E+  ++
Sbjct: 585 PDETLCTRLLRKHYELGNIDEAIELQNEL 613



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 180/398 (45%), Gaps = 3/398 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DE 234
           VF  L        M++ A +    M K+   P        L  L K      +   F D 
Sbjct: 64  VFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDM 123

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +     P++  +  ++   CKEG ++ A+ +  QMK  G  PDIV YN L+ GY ++G +
Sbjct: 124 VGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLL 183

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            ++  L +EM+  GC+P+  +Y  LI + C+ + M  A   F EM+    + +V++Y+TL
Sbjct: 184 DESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTL 243

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I   CK   +    +    M + G+LPN+ TY  ++ A+ K   L E   L  EM +   
Sbjct: 244 IDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHV 303

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             ++  Y  ++   C+ G + EA  ++  M  A ++P   ++  ++HG +    + +A E
Sbjct: 304 DLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAME 363

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F EM  + +   P       ++  L    K+E  K + + +   G   N   +T  + +
Sbjct: 364 LFNEMREKDI--KPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDA 421

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            F  G+  EA +   +M D        TF  L+ GL K
Sbjct: 422 YFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCK 459



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 169/346 (48%), Gaps = 2/346 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +  K    G  + L +EM +E   L     +  L+       M+ +A E+   M
Sbjct: 275 YSSLIDANCKAGNLGEAFMLADEMLQEHVDL-NIVTYTTLLDGLCEEGMMNEAEELFRAM 333

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K G  P+   +  L+    K  S+ +A +LF+EMRE+  KP +  + ++++G C E KL
Sbjct: 334 GKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKL 393

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            E K ++ +MK++G   + V+Y  L+  Y + G  T+A  LL+EMR  G +    ++  L
Sbjct: 394 EECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCAL 453

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC+   ++EA   F  M     + +V  YT LI G CK+  I    ++ D M  + +
Sbjct: 454 IDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNM 513

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+++ Y  ++  + K    +E + +  +M ++G   D+  Y  ++    + G++++A  
Sbjct: 514 IPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARK 573

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              EM    + P       ++      G + EA E   E+V +GL+
Sbjct: 574 FLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLI 619



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/462 (21%), Positives = 186/462 (40%), Gaps = 59/462 (12%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           TTE + IL+     ARM   A  +L E                   L  +S V   + +F
Sbjct: 8   TTESYCILVHILFYARMYFHANNILKE-------------------LVLSSWVLPGSDVF 48

Query: 233 DEM---RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           + +   R    P    F +L     + G L  A    ++M      P     N  L   +
Sbjct: 49  EILWTTRNVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLS 108

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G+   + +  ++M   G  P   +Y ++I  +C+   M  A   F +M++ G   D+V
Sbjct: 109 KAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIV 168

Query: 350 TYTTLISG-----------------------------------FCKSRKIDRCYEILDSM 374
           TY TLI G                                   FCK + + R +E    M
Sbjct: 169 TYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREM 228

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             + + PN ++Y  ++ A  K+  ++  ++   +M ++G +P+   Y+ +I   CK G L
Sbjct: 229 KDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNL 288

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  + +EM    +     ++  ++ G   +G + EA E F+ M   G+   P      
Sbjct: 289 GEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGV--TPNLQAYT 346

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           AL++  ++ + ++ A ++++ +  K  + ++  W   +  L S   ++E      +M ++
Sbjct: 347 ALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKES 406

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
            +   P  +  LM    K  NR  A  + E++R +  E  + 
Sbjct: 407 GIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVV 448


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 196/408 (48%), Gaps = 7/408 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  IT   FV           V  A++V+D M + G +PD F +  +++ LCKN  ++E
Sbjct: 283 EPDQITYNTFV---NGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 228 AAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  + ++M +R   P +  F +L+   C   +L EA  +  Q+   G  PD+  +N L++
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              ++G    A  L +EM+  GC P+  +Y  LI  LC + K+ +A     +ME +GC  
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             +TY T+I G CK  +I+   E+ D M  +GI  N +T+  ++    K +++++   L+
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLI 519

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M   G  P+   YN ++   CK G++K+A ++   M A        ++  +++G    
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G    A +  + M  +G+   P+      +L SL R   +  A  ++  +   G   +  
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPK--AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDAL 637

Query: 527 AWTIWIHSLF-SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            + I    L    G +KEA  + L+M+D   +P+  +F  L  GL  L
Sbjct: 638 TYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 193/394 (48%), Gaps = 5/394 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
           +L+  +     V+ A+  + +    G EPD+  +   ++ LC+N  V  A K+ D M +E
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P +  +  ++   CK G+L EAK +L QM D G  PDI  +N L++      ++ +A
Sbjct: 316 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA 375

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +L +++  KG  P+  ++ +LI ALC++     A R F EM+ SGC  D VTY TLI  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C   K+ +  ++L  M   G   + +TY  I+    KK  +EE  E+  +M   G   +
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              +N +I   CK  ++ +A  + N+M +  L P   ++  ++  +  QG + +A +  +
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 555

Query: 478 EMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M   G  +    YGTL   +N L +A + ++A  V   +  KG      A+   + SLF
Sbjct: 556 TMTANGFEVDVVTYGTL---INGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLF 612

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              ++++A S   +M +    P   T+  + RGL
Sbjct: 613 RRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 646



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 224/456 (49%), Gaps = 18/456 (3%)

Query: 140 VYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           VY  L+  L   SKM+   +V++ M   R  KP ++T   F  LM+    A  V+ A+ +
Sbjct: 148 VYNHLLNVLVEGSKMKLLESVYSEMGA-RGIKPDVVT---FNTLMKALCRAHQVRTAVLM 203

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCK 255
           L+EM   G  PDE  F  L+    +  S++ A ++   M E    + +     L+ G+CK
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++ +A   + Q    GFEPD + YN  ++G  Q   +  A +++  M ++G DP+  +
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +++  LC+  ++EEA     +M   GC  D+ T+ TLI+  C   +++   ++   + 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G+ P+  T+  ++ A  K  +    + L  EM+  GC PD   YN +I   C LG+L 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+++  +ME+      T ++  ++ G   +  + EA E F +M  +G+  +    T   
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGI--SRNAITFNT 501

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM---- 551
           L++ L + +K++ A  + + ++++G + N   +   +      G +K+A      M    
Sbjct: 502 LIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            + DV+    T+  L+ GL K    Q+A ++   +R
Sbjct: 562 FEVDVV----TYGTLINGLCKAGRTQVALKVLRGMR 593



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 228/498 (45%), Gaps = 7/498 (1%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLS 149
           L  AL        P + E +I + G  G L     + A  ++  +     V  + + S  
Sbjct: 61  LNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYE 120

Query: 150 KMRKFG-AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
             + F  AV  ++ +++        T V+  L+        +K    V  EM   G +PD
Sbjct: 121 GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPD 180

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
              F  L+ ALC+   V+ A  + +EM  R   P    FT+L+ G+ +EG +  A  V  
Sbjct: 181 VVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKA 240

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M + G     V  N L++GY ++G++ DA   +++    G +P+  +Y   +  LC+ +
Sbjct: 241 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQND 300

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
            +  A +    M + G + DV TY  +++  CK+ +++    IL+ M+ RG LP+  T+ 
Sbjct: 301 HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFN 360

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++ A      LEE ++L  ++   G  PDV  +N++I   CK+G+   A+ ++ EM+ +
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG-TLKALLNSLLRAQKV 506
             +P   ++  ++      G L +A +  K+M   G    P+   T   +++ L +  ++
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG---CPRSTITYNTIIDGLCKKMRI 477

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           E A++V+  +  +G   N   +   I  L  +  + +A      M+   + P   T+  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSI 537

Query: 567 MRGLKKLYNRQIAAEITE 584
           +    K  + + AA+I E
Sbjct: 538 LTHYCKQGDIKKAADILE 555


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 232/489 (47%), Gaps = 10/489 (2%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           R++ WA +   Y H   VY  +++ LSK +       ++  M + + QL   E F  +M 
Sbjct: 231 RFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQL-CPEAFGFVMV 289

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKP 241
            ++ A  ++ A++VL  M K G EP+  +    +  L   + +K+A +  + M      P
Sbjct: 290 SYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAP 349

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  +  L+ G+C   ++ +A  ++ QM   G  PD V Y  ++    +  ++ +  EL+
Sbjct: 350 NVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELI 409

Query: 302 KEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           K+M+      P+  +Y  LIQ L +    +EA     E E+   + D V Y+ ++  +CK
Sbjct: 410 KKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCK 469

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             KI +  E++  M  +G  P+ +TY  ++    +  +L++  ++M +M K  C P+   
Sbjct: 470 EGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVT 529

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y   +   C+ G+  EA  + N  E    +P   ++ V+VHG   +G L EAC+  +EM+
Sbjct: 530 YTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMI 589

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           G+G    P    +  L++SL R  K   A  +    + KGC +NV  +T  IH       
Sbjct: 590 GKGFFPNPV--EINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDD 647

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFK- 598
           ++ A S   DM   +  P   T+  L+  L K    + A E+T K +R+      +T++ 
Sbjct: 648 LEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRS 707

Query: 599 ---MYKRRG 604
               Y R+G
Sbjct: 708 VIHQYCRKG 716



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 189/377 (50%), Gaps = 7/377 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  L++ + +   V +A+E++D+MP  GC PD+  +  ++  LC++  + E 
Sbjct: 349 PNVVT---YNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEI 405

Query: 229 AKLFDEMR--ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            +L  +M+   +  P    + SL+    K G   EA  +L + +   F+ D V Y+ ++ 
Sbjct: 406 RELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVH 465

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            Y + GK+  A EL+ EM  KGCDP+  +YT ++   CR+ K+++A +   +M +  C+ 
Sbjct: 466 AYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKP 525

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + VTYTT ++G C++ K     ++++   +    PN +TY  ++    ++ +L E  +++
Sbjct: 526 NAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVV 585

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM   G  P+    N+++   C+ G+ +EA  +  E      +    +F  ++HGF  +
Sbjct: 586 REMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQK 645

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
             L  A     +M        P   T  AL+++L +  ++E A ++   ++ +G   +  
Sbjct: 646 DDLEAALSLLDDMYLCN--KHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPV 703

Query: 527 AWTIWIHSLFSNGHVKE 543
            +   IH     G V++
Sbjct: 704 TYRSVIHQYCRKGRVED 720



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 161/306 (52%), Gaps = 6/306 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           P++V     Y +LI+ LSK         +++E  K + ++   E +  ++  +     ++
Sbjct: 420 PDHV----TYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVE-YSAIVHAYCKEGKIQ 474

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA E++ EM   GC+PD   +  +LD  C+   + +A K+  +M +   KP+   +T+ L
Sbjct: 475 KAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFL 534

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C+ GK +EA+ ++   ++  + P+ + Y+ ++ G  + GK+ +A ++++EM  KG  
Sbjct: 535 NGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFF 594

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN     +L+ +LCR  K  EAN+   E    GC  +VV +TT+I GFC+   ++    +
Sbjct: 595 PNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSL 654

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M      P+ +TY  ++ A  K + +EE  EL  +M + G VP    Y  VI   C+
Sbjct: 655 LDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCR 714

Query: 431 LGELKE 436
            G +++
Sbjct: 715 KGRVED 720



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 8/272 (2%)

Query: 114 CGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQL 171
           C +  +L  R  M  S++  +  +   Y  ++  L +  K      ++ EM  +   P  
Sbjct: 538 CRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNP 597

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           +   + V  + R    R   +A ++L E    GC  +   F  ++   C+   ++ A  L
Sbjct: 598 VEINLLVHSLCRDGKPR---EANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSL 654

Query: 232 FDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
            D+M    K P    +T+L+    K  ++ EA  + ++M   G  P  V Y +++  Y +
Sbjct: 655 LDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCR 714

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            G++ D  +LLK+M  K     A  Y ++I+ LC+   +EEAN    E+ R+    D  T
Sbjct: 715 KGRVEDLLKLLKKMLLKSRFQTA--YNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKT 772

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
              L+  +         Y++   M  R ++P+
Sbjct: 773 CHVLMESYLNVGIPMSAYKVACRMFNRNLIPD 804


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 204/412 (49%), Gaps = 5/412 (1%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           + + M KE      +  + IL+        +++A  + D+M + GC+P    +  L+ AL
Sbjct: 252 VFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKAL 311

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C    + +A  LFDEM  R  KP++  +T L+ G C++GK+ EA  V  +M      P +
Sbjct: 312 CDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSV 371

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           + YN L++GY + G++  AFELL  M ++ C PN  ++  L++ LCR+ K  +A      
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKR 431

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M  +G   D+V+Y  LI G C+   ++  Y++L SM    I P+ LT+  I+ A  K+ +
Sbjct: 432 MLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGK 491

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            +     +G M + G   D      +I   CK+G+ ++A+ +   +    +     S  V
Sbjct: 492 ADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNV 551

Query: 459 MVHGFLGQGCLI-EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++   L +GC + E      ++   GL+  P   T   L++ L+R+  +  +  +   + 
Sbjct: 552 ILD-MLSKGCKVKEELAMLGKINKLGLV--PSVVTYTTLVDGLIRSGDITGSFRILELMK 608

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             GC  NVY +TI I+ L   G V+EA      M D+ V P   T+  +++G
Sbjct: 609 LSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKG 660



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 211/440 (47%), Gaps = 8/440 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  LI  L ++ +    + L ++M ++  Q  +T  + +L++      ++ 
Sbjct: 264 PNSVS----YSILIHGLCEVGRLEEAFGLKDQMGEKGCQ-PSTRTYTVLIKALCDRGLID 318

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           KA  + DEM   GC+P+   +  L+D LC++  ++EA  +  +M ++R  PS+  + +L+
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALI 378

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+CK+G++V A  +L  M+    +P++  +N L+ G  ++GK   A  LLK M   G  
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLS 438

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  SY VLI  LCR   M  A +    M     E D +T+T +I+ FCK  K D     
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAF 498

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M+++GI  +++T   ++    K  +  + + ++  + K+  +    + NV++ +  K
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSK 558

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             ++KE + +  ++    L P   ++  +V G +  G +  +    + M   G L  P  
Sbjct: 559 GCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCL--PNV 616

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                ++N L +  +VE A+ + S +   G   N   +T+ +    +NG +  A      
Sbjct: 617 YPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRA 676

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M++         ++ L++G 
Sbjct: 677 MVERGYELNDRIYSSLLQGF 696



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 229/502 (45%), Gaps = 41/502 (8%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNY-------------VHSYDVYR------ 142
           + P +  +VI+      ++  R++MW  K  +Y             + S  +YR      
Sbjct: 67  MNPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSSGLYRVAHAVI 126

Query: 143 -ALIKSLSKMRKFGAVWALM---EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            ALIK  S+  K   +  LM   +E+R+     +    +  L+   A   +   A     
Sbjct: 127 VALIKECSRCEK--EMLKLMYCFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYR 184

Query: 199 EMPKYGCEPDEFVFG-----CLLDALCKNSSVKEAAKLFDE--MRERFKPSLRHFTSLLY 251
            M     E D FV G      +++ALCKN    EAA++F    ++  F       TSLL 
Sbjct: 185 RM-----EADGFVVGMIDYRTIVNALCKNGYT-EAAEMFMSKILKIGFVLDSHIGTSLLL 238

Query: 252 GWCKEGKLVEAKYVL-VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           G+C+   L +A  V  V  K+    P+ V Y+ L+ G  ++G++ +AF L  +M  KGC 
Sbjct: 239 GFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQ 298

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +YTVLI+ALC    +++A   F EM   GC+ +V TYT LI G C+  KI+    +
Sbjct: 299 PSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGV 358

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M++  I P+ +TY  ++  + K   +    EL+  M K  C P+V  +N ++   C+
Sbjct: 359 CRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCR 418

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G+  +AV++   M    LSP   S+ V++ G   +G +  A +    M    +   P  
Sbjct: 419 VGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDI--EPDC 476

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  A++N+  +  K ++A      ++ KG  L+    T  I  +   G  ++A      
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILET 536

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           ++   ++  P +   ++  L K
Sbjct: 537 LVKMRILTTPHSLNVILDMLSK 558



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 6/226 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQL--ITTEVFVILMRRFASARMVKKAIEVLD 198
           + A+I +  K  K     A +  M ++   L  +T    +  + +    R    A+ +L+
Sbjct: 479 FTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTR---DALFILE 535

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            + K            +LD L K   VKE   +  ++ +    PS+  +T+L+ G  + G
Sbjct: 536 TLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSG 595

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  +  +L  MK +G  P++  Y  +++G  Q G++ +A +LL  M+  G  PN  +YT
Sbjct: 596 DITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYT 655

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           V+++      K++ A      M   G E +   Y++L+ GF  S+K
Sbjct: 656 VMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQK 701


>gi|413952128|gb|AFW84777.1| hypothetical protein ZEAMMB73_772209 [Zea mays]
          Length = 519

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 177/356 (49%), Gaps = 6/356 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP Y        +++  L+K R+F A  AL++EMR+      +    ++L+RR  +AR V
Sbjct: 129 QPGYAPGRRACHSMLDILAKHRRFDAARALLDEMRRA--STASPAAVLLLVRRHCAARDV 186

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
             A+     +P +G       F  LL ALC+  +V++A  L    ++ F    + F  +L
Sbjct: 187 AGAVAAFRALPSFGFHTGAAEFHGLLSALCRYKNVQDAENLLISWQKEFPFETKSFNIVL 246

Query: 251 YGWCK-EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
            GWC     + EAK     M+  G   D++ Y +++S +++ G +    +L   M   G 
Sbjct: 247 NGWCNIVCSVREAKRFWSSMERKGIARDVLSYGSMISCFSKAGSLDSVMKLFNRMNEAGV 306

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+   Y  ++ AL +   ++EA      ME      D  T+ +LI   CK+R+     E
Sbjct: 307 APDRKVYNAIVFALAKGRCVKEAKMLVRSMEEKQVAPDTATFNSLIGPLCKARQFQEAME 366

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D+M+QR + P+  T+ H +L   +     E  +L+ +M+++ C P++  Y ++IR  C
Sbjct: 367 MFDAMLQRKLSPSVRTF-HALLNVARNS--TEVFDLLDKMKQLRCEPEMDTYIMLIRKFC 423

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +  E +    +W+ M A  LSP   +++V++HG    G L EA  Y++EM  +G L
Sbjct: 424 RWREHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAARYYEEMKSKGFL 479



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 157/360 (43%), Gaps = 7/360 (1%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           G  P       +LD L K+     A  L DEMR     S      L+   C    +  A 
Sbjct: 131 GYAPGRRACHSMLDILAKHRRFDAARALLDEMRRASTASPAAVLLLVRRHCAARDVAGAV 190

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
                +   GF      ++ LLS   +   + DA  LL   +++       S+ +++   
Sbjct: 191 AAFRALPSFGFHTGAAEFHGLLSALCRYKNVQDAENLLISWQKE-FPFETKSFNIVLNGW 249

Query: 324 CRME-KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           C +   + EA R +  MER G   DV++Y ++IS F K+  +D   ++ + M + G+ P+
Sbjct: 250 CNIVCSVREAKRFWSSMERKGIARDVLSYGSMISCFSKAGSLDSVMKLFNRMNEAGVAPD 309

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           +  Y  I+ A  K   ++E   L+  M +    PD + +N +I   CK  + +EA+ +++
Sbjct: 310 RKVYNAIVFALAKGRCVKEAKMLVRSMEEKQVAPDTATFNSLIGPLCKARQFQEAMEMFD 369

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M    LSP   +F  +++       + +  +  K+     L   P+  T   L+    R
Sbjct: 370 AMLQRKLSPSVRTFHALLNVARNSTEVFDLLDKMKQ-----LRCEPEMDTYIMLIRKFCR 424

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
            ++ E  + +WS +   G   +  A+ + IH LF NG ++EA  Y  +M     +P+  T
Sbjct: 425 WREHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAARYYEEMKSKGFLPEKKT 484



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           F+ A  +   +++ + M + G  PD  V+  ++ AL K   VKEA  L   M E+   P 
Sbjct: 285 FSKAGSLDSVMKLFNRMNEAGVAPDRKVYNAIVFALAKGRCVKEAKMLVRSMEEKQVAPD 344

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              F SL+   CK  +  EA  +   M      P +  ++ LL+        T+ F+LL 
Sbjct: 345 TATFNSLIGPLCKARQFQEAMEMFDAMLQRKLSPSVRTFHALLN---VARNSTEVFDLLD 401

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M++  C+P  ++Y +LI+  CR  + E   + +  M  +G   D   Y  LI G   + 
Sbjct: 402 KMKQLRCEPEMDTYIMLIRKFCRWREHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNG 461

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           +++      + M  +G LP + T   +M   E +E
Sbjct: 462 RLEEAARYYEEMKSKGFLPEKKTEEMVMAWLEGRE 496



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

Query: 148 LSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
           L+  R    V+ L+++M++ +  P++ T   +++L+R+F   R  +   ++   MP  G 
Sbjct: 387 LNVARNSTEVFDLLDKMKQLRCEPEMDT---YIMLIRKFCRWREHESVEKLWSAMPANGL 443

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
            PD   +  L+  L  N  ++EAA+ ++EM+ + F P  +    ++  W +  +L +A  
Sbjct: 444 SPDRSAYIVLIHGLFLNGRLEEAARYYEEMKSKGFLPE-KKTEEMVMAWLEGRELAKASV 502

Query: 265 V 265
           +
Sbjct: 503 I 503


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 196/416 (47%), Gaps = 38/416 (9%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           A  VL    K G EPD   F  L++  C    V EA  L D M E + +P L   ++L+ 
Sbjct: 153 AFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLIN 212

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C +G++ EA  ++ +M + GF+PD V Y  +L+   + G    A +L ++M  +    
Sbjct: 213 GLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA 272

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +   Y+++I +LC+    ++A   F EME  G +ADVVTY++LI G C   K D   ++L
Sbjct: 273 SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKML 332

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKI----------------- 412
             MI R I+P+ +T+  ++    K+ +L E  EL  EM  R I                 
Sbjct: 333 REMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 392

Query: 413 ----------------GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
                           GC PD+  Y+++I   CK   + + + ++ E+ +  L P T ++
Sbjct: 393 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 452

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +V GF   G L  A E F+EMV RG+   P   T   LL+ L    ++  A +++  +
Sbjct: 453 NTLVLGFCQSGKLNAAKELFQEMVSRGV--PPSVVTYGILLDGLCDNGELNKALEIFEKM 510

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                 L +  + I IH + +   V +A S    + D  V P   T+  ++ GL K
Sbjct: 511 QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 566



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 211/458 (46%), Gaps = 55/458 (12%)

Query: 115 GDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLI 172
           G A  LGY        +P+ +     +  L+       +     AL++ M   K++P L+
Sbjct: 158 GRAWKLGY--------EPDTI----TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLV 205

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL---------------- 216
           T      L+        V +A+ ++D M +YG +PDE  +G +L                
Sbjct: 206 TVST---LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 262

Query: 217 -------------------DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
                              D+LCK+ S  +A  LF+EM  +  K  +  ++SL+ G C +
Sbjct: 263 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 322

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK  +   +L +M      PD+V ++ L+  + + GK+ +A EL  EM  +G  P+  +Y
Sbjct: 323 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 382

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI   C+   + EAN+ F  M   GCE D+VTY+ LI+ +CK++++D    +   +  
Sbjct: 383 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS 442

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G++PN +TY  ++L   +  +L    EL  EM   G  P V  Y +++   C  GEL +
Sbjct: 443 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 502

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ ++ +M+ + ++ G   + +++HG      + +A   F  +  +G+   P   T   +
Sbjct: 503 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGV--KPDVVTYNVM 560

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           +  L +   +  A  ++  +   GC  + + + I I +
Sbjct: 561 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 598



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 178/370 (48%), Gaps = 38/370 (10%)

Query: 148 LSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMPKYGC 205
           L+++ K G     ++  RK + + I   V  + I++           A+ + +EM   G 
Sbjct: 246 LNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGI 305

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
           + D   +  L+  LC +    + AK+  EM  R   P +  F++L+  + KEGKL+EAK 
Sbjct: 306 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKE 365

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +  +M   G  PD + YN+L+ G+ +   + +A ++   M  KGC+P+  +Y++LI + C
Sbjct: 366 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC 425

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           + +++++  R F E+   G   + +TY TL+ GFC+S K++   E+   M+ RG+ P+ +
Sbjct: 426 KAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVV 485

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKI-------------------------------- 412
           TY  ++       EL + +E+  +M+K                                 
Sbjct: 486 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 545

Query: 413 ---GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  PDV  YNV+I   CK G L EA  ++ +M+    +P   ++ +++   LG   L
Sbjct: 546 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGL 605

Query: 470 IEACEYFKEM 479
           I + E  +EM
Sbjct: 606 ISSVELIEEM 615



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 160/323 (49%), Gaps = 6/323 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI  L    K+     ++ EM  R   P ++T   F  L+  F     + +A E+ +
Sbjct: 312 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT---FSALIDVFVKEGKLLEAKELYN 368

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+D  CK + + EA ++FD M  +  +P +  ++ L+  +CK  
Sbjct: 369 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 428

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +  ++   G  P+ + YN L+ G+ Q GK+  A EL +EM  +G  P+  +Y 
Sbjct: 429 RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 488

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+  LC   ++ +A   F +M++S     +  Y  +I G C + K+D  + +  S+  +
Sbjct: 489 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 548

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++    KK  L E   L  +M++ GC PD   YN++IR       L  +
Sbjct: 549 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 608

Query: 438 VNVWNEMEAASLSPGTDSFVVMV 460
           V +  EM+    S  + +  +++
Sbjct: 609 VELIEEMKVCGFSADSSTIKMVI 631



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 37/377 (9%)

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T ++  +C++ KL+ A  VL +    G+EPD + ++ L++G+   G++++A  L+  M  
Sbjct: 138 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 197

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEA-----------------------NR--------- 334
               P+  + + LI  LC   ++ EA                       NR         
Sbjct: 198 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 257

Query: 335 ---AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
               F +ME    +A VV Y+ +I   CK    D    + + M  +GI  + +TY  ++ 
Sbjct: 258 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 317

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
                 + ++  +++ EM     +PDV  ++ +I +  K G+L EA  ++NEM    ++P
Sbjct: 318 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 377

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            T ++  ++ GF  + CL EA + F  MV +G    P   T   L+NS  +A++V+    
Sbjct: 378 DTITYNSLIDGFCKENCLHEANQMFDLMVSKG--CEPDIVTYSILINSYCKAKRVDDGMR 435

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           ++  I +KG   N   +   +     +G +  A     +M+   V P   T+  L+ GL 
Sbjct: 436 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 495

Query: 572 KLYNRQIAAEITEKVRK 588
                  A EI EK++K
Sbjct: 496 DNGELNKALEIFEKMQK 512



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 167/394 (42%), Gaps = 62/394 (15%)

Query: 225 VKEAAKLFDEM-RERFKPSLRHFT------------SLLYGWCKEGKLVEAKYVLVQMKD 271
           V +A  LF+ M + R  P+   F              L+ G+CK             M+ 
Sbjct: 80  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCK------------GMEL 127

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G E D+     +++ Y +  K+  AF +L    + G +P+  +++ L+   C   ++ E
Sbjct: 128 NGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSE 187

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A      M       D+VT +TLI+G C   ++     ++D M++ G  P+++TY  ++ 
Sbjct: 188 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 247

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME------ 445
              K       ++L  +M +      V  Y++VI   CK G   +A++++NEME      
Sbjct: 248 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKA 307

Query: 446 -----------------------------AASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
                                          ++ P   +F  ++  F+ +G L+EA E +
Sbjct: 308 DVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELY 367

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            EM+ RG+  AP   T  +L++   +   +  A  ++  +V+KGCE ++  ++I I+S  
Sbjct: 368 NEMITRGI--APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC 425

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
               V +      ++    ++P   T+  L+ G 
Sbjct: 426 KAKRVDDGMRLFREISSKGLIPNTITYNTLVLGF 459



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 14/211 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN +     Y  L+    +  K  A   L +EM  R   P ++T   + IL+        
Sbjct: 447 PNTI----TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT---YGILLDGLCDNGE 499

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + KA+E+ ++M K        ++  ++  +C  S V +A  LF  + ++  KP +  +  
Sbjct: 500 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 559

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK+G L EA  +  +MK+ G  PD   YN L+  +     +  + EL++EM  K 
Sbjct: 560 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM--KV 617

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           C  +A+S T  I+ +  M      +++F++M
Sbjct: 618 CGFSADSST--IKMVIDMLSDRRLDKSFLDM 646



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 37/278 (13%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K+ DA +L + M +    P    +  L  A+ R ++ +        ME +G E D+ T T
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +I+ +C+ +K+   + +L                                   G   K+
Sbjct: 139 IMINCYCRKKKLLFAFSVL-----------------------------------GRAWKL 163

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PD   ++ ++   C  G + EAV + + M      P   +   +++G   +G + EA
Sbjct: 164 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 223

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                 MV  G    P   T   +LN L ++    +A D++  +  +  + +V  ++I I
Sbjct: 224 LVLIDRMVEYGF--QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 281

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            SL  +G   +A S   +M    +     T++ L+ GL
Sbjct: 282 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 172/332 (51%), Gaps = 3/332 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL+        +  A+ VL +M K G +PD   F  L++ LC    +KEA +LF+EM  R
Sbjct: 126 ILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGR 185

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P+   FT L+   CK+G + EA+ V   M + G EP+I  YN L++GY    +M DA
Sbjct: 186 DAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDA 245

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++ + M  KGC P+ +SY++LI   C+  +++EA     +M       + VTY TL+ G
Sbjct: 246 SKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQG 305

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C +  +    E+   M   G+LPN  TY  ++    K   LEE ++L+  M++    PD
Sbjct: 306 LCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPD 365

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN++I+     G+L+ A  +++++ A  + P   ++ +M+ G L +G   EA + F+
Sbjct: 366 IVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFR 425

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +M   G L  P   +   ++   L+ Q    A
Sbjct: 426 KMEDDGFL--PDSCSYNVIIQGFLQNQDPSTA 455



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 195/418 (46%), Gaps = 41/418 (9%)

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSL 243
           A  +     + + ++M  +G   +++    L+++LC+ S +  A  +  +M +   +P  
Sbjct: 97  AKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDS 156

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             FT+L+ G C EG++ EA  +  +M      P+ V +  L+    + G +++A  + + 
Sbjct: 157 VTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFET 216

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M  KG +PN  +Y  L+   C   +M +A++ F  M   GC   V +Y+ LI+G+CKSR+
Sbjct: 217 MTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRR 276

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           ID    +L  M ++ ++PN +TY  +M        L E  EL  +M   G +P++  Y++
Sbjct: 277 IDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSI 336

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++   CK G L+EA+ +   M+   L P      ++++  L QG  I             
Sbjct: 337 LLDGLCKHGHLEEALKLLTSMQERKLEPD-----IVLYNILIQGMFI------------- 378

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
                              A K+E+AK+++S +   G   +V  + I I  L   G   E
Sbjct: 379 -------------------AGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDE 419

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV--RKMAAERQITFKM 599
           A      M D   +P   ++  +++G  +  +   A ++ +++  R+ +A+   TFKM
Sbjct: 420 AYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSS-TFKM 476



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 164/334 (49%), Gaps = 12/334 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QP+ V     +  LI  L    +      L  EM  R   P  +T   F IL+       
Sbjct: 153 QPDSV----TFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVT---FTILVDVLCKKG 205

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
           MV +A  V + M + G EP+ + +  L++  C    + +A+K+F+ M  +   PS+  ++
Sbjct: 206 MVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYS 265

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+ G+CK  ++ EAK +L QM +    P+ V YN L+ G      + +A EL K+M   
Sbjct: 266 ILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSS 325

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +Y++L+  LC+   +EEA +    M+    E D+V Y  LI G   + K++  
Sbjct: 326 GMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVA 385

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEEL-EECVELMGEMRKIGCVPDVSNYNVVIR 426
            E+   +   GI P+  TY +IM+    KE L +E  +L  +M   G +PD  +YNV+I+
Sbjct: 386 KELFSKLFANGIRPSVRTY-NIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQ 444

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
              +  +   A+ + +EM     S  + +F +++
Sbjct: 445 GFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLL 478



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           + IL+  +  +R + +A  +L +M +    P+   +  L+  LC  SS+ EA +LF +M 
Sbjct: 264 YSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMC 323

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
                P+LR ++ LL G CK G L EA  +L  M++   EPDIV+YN L+ G    GK+ 
Sbjct: 324 SSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLE 383

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A EL  ++   G  P+  +Y ++I+ L +    +EA + F +ME  G   D  +Y  +I
Sbjct: 384 VAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVII 443

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            GF +++      +++D M+ R    +  T+  ++L  E  +E+
Sbjct: 444 QGFLQNQDPSTAIQLIDEMVGRRFSADSSTF-KMLLDLESHDEI 486



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 144/321 (44%), Gaps = 11/321 (3%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P  V     L   A+  + +    L  +M   G   N  +  +LI +LCR+  +  A   
Sbjct: 84  PSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSV 143

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             +M + G + D VT+TTLI+G C   +I    E+ + M  R  +PN +T+  ++    K
Sbjct: 144 LSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCK 203

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           K  + E   +   M + G  P++  YN ++   C   E+ +A  V+  M     +P   S
Sbjct: 204 KGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHS 263

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           + ++++G+     + EA     +M  + L+  P   T   L+  L  A  +  A++++  
Sbjct: 264 YSILINGYCKSRRIDEAKALLTQMSEKELI--PNTVTYNTLMQGLCHASSLLEAQELFKK 321

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL----- 570
           + + G   N+  ++I +  L  +GH++EA      M +  + P    +  L++G+     
Sbjct: 322 MCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGK 381

Query: 571 ----KKLYNRQIAAEITEKVR 587
               K+L+++  A  I   VR
Sbjct: 382 LEVAKELFSKLFANGIRPSVR 402



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 2/242 (0%)

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +++A  +F  M         V     +    K ++      + + M   G+  N  T   
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++ +  +   +   V ++ +M K+G  PD   +  +I   C  G +KEAV ++NEM    
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P T +F ++V     +G + EA   F+ M  +G+   P   T  AL+N      ++  
Sbjct: 187 AMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGV--EPNIYTYNALMNGYCLRLEMND 244

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  V+  +V KGC  +V++++I I+    +  + EA +    M + +++P   T+  LM+
Sbjct: 245 ASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQ 304

Query: 569 GL 570
           GL
Sbjct: 305 GL 306


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 184/367 (50%), Gaps = 4/367 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y +LI  L K  +    + L E+M  +        V+  L+R F      +   ++  E
Sbjct: 194 TYCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 252

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           + + GC+PD  +    +D + K   V++   +F+++R   F P +R ++ L++G  K G+
Sbjct: 253 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 312

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             E   +   MK  GF  D   YN ++ G+ + GK+  A+E+L+EM+ K   P   +Y  
Sbjct: 313 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 372

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++  L ++++++EA   F E +  G E +VV Y++LI GF K  +ID  Y IL+ M+++G
Sbjct: 373 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 432

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN  T+  ++ A  K EE+ E +     M+++ C P+   Y+++I   C++ +  +A 
Sbjct: 433 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 492

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
             W +M+   L P   ++  M+ G    G + +A   F+     G    P   +  AL+ 
Sbjct: 493 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG--GIPDAASFNALIE 550

Query: 499 SLLRAQK 505
            +  A +
Sbjct: 551 GMSNANR 557



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 212/448 (47%), Gaps = 5/448 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +++  L K RK     +L E M+K+      +  + I++        V++A  +LDEM
Sbjct: 91  FNSILTCLGKKRKVDEALSLFEVMKKDAEP--NSSTYNIIIDMLCLGGRVEEAYRILDEM 148

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKL 259
                 P+      ++D LCK   ++EA K+F+   +R   P    + SL+ G  K+G++
Sbjct: 149 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 208

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M DAG   + VVY +L+  +   G+  D  ++ KE+ R+GC P+       
Sbjct: 209 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTY 268

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  + +  ++E+    F ++   G   DV +Y+ LI G  K+ +      I  +M Q+G 
Sbjct: 269 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 328

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             +   Y  ++    K  ++ +  E++ EM++    P V+ Y  ++    K+  L EA  
Sbjct: 329 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 388

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ E ++  +      +  ++ GF   G + EA    +EM+ +GL   P   T  +LL++
Sbjct: 389 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL--TPNVYTWNSLLDA 446

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L++A+++  A   +  +    C  N Y ++I I+ L       +A  +  DM    ++P 
Sbjct: 447 LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 506

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             T+  ++ GL K+ N   A  + E+ +
Sbjct: 507 VVTYTTMISGLAKVGNITDAYSLFERFK 534



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 221/447 (49%), Gaps = 11/447 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ++I  L K  + G    L  +M  E+  +     +  ++  + SA   + A ++L+ +
Sbjct: 21  YTSMIWVLCKAGRLGEAEELFAQMEAER-SVPCAYAYNTMIMGYGSAGRFEDAYKLLERL 79

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260
            + GC P    F  +L  L K   V EA  LF+ M++  +P+   +  ++   C  G++ 
Sbjct: 80  RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVE 139

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +L +M+ A   P+++  N ++    +  K+ +A+++ +   ++GC+P+  +Y  LI
Sbjct: 140 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 199

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             L +  +++EA R F +M  +G  A+ V YT+LI  F    + +  ++I   +I+RG  
Sbjct: 200 DGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCK 259

Query: 381 PNQLTYLHI-MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           P+ LT L+  M    K  E+E+   +  ++R  G +PDV +Y+++I    K G+ +E  N
Sbjct: 260 PD-LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSN 318

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +++ M+    +    ++  +V GF   G + +A E  +EM  + +   P   T  A+++ 
Sbjct: 319 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV--QPTVATYGAIVDG 376

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L +  +++ A  ++    +KG ELNV  ++  I      G + EA     +MM   + P 
Sbjct: 377 LAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 436

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             T+  L+  L K      A EI E +
Sbjct: 437 VYTWNSLLDALVK------AEEINEAL 457



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 174/363 (47%), Gaps = 6/363 (1%)

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A K F E++ +  KP    +TS+++  CK G+L EA+ +  QM+     P    YN ++ 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           GY   G+  DA++LL+ +R +GC P+  S+  ++  L +  K++EA   F E+ +   E 
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEP 120

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVEL 405
           +  TY  +I   C   +++  Y ILD M    + PN LT ++IM+    K  +LEE  ++
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLT-VNIMVDRLCKARKLEEAYKI 179

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
                + GC PD   Y  +I    K G++ EA  ++ +M  A  +     +  ++  F  
Sbjct: 180 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 239

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G   +  + FKE++ RG    P    L   ++ + +A +VE  + ++  I + G   +V
Sbjct: 240 HGRKEDGHKIFKELIRRG--CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 297

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
            +++I IH L   G  +E  +    M           +  ++ G  K      A EI E+
Sbjct: 298 RSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEE 357

Query: 586 VRK 588
           +++
Sbjct: 358 MKE 360



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 2/197 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y A++  L+K+ +    + L EE + +  +L    ++  L+  F     + +A  +L+E
Sbjct: 369 TYGAIVDGLAKIDRLDEAYMLFEEAKSKGIEL-NVVLYSSLIDGFGKVGRIDEAYLILEE 427

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
           M K G  P+ + +  LLDAL K   + EA   F  M+E +  P+   ++ L+ G C+  K
Sbjct: 428 MMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQK 487

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +A      M+  G  P++V Y  ++SG A++G +TDA+ L +  +  G  P+A S+  
Sbjct: 488 YNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNA 547

Query: 319 LIQALCRMEKMEEANRA 335
           LI+ +    +  EA +A
Sbjct: 548 LIEGMSNANRAMEAYQA 564



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 2/243 (0%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A KQ  +      Y A++    K  K    + ++EEM KEK    T   +  ++   A  
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM-KEKCVQPTVATYGAIVDGLAKI 380

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             + +A  + +E    G E +  ++  L+D   K   + EA  + +EM ++   P++  +
Sbjct: 381 DRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 440

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            SLL    K  ++ EA      MK+    P+   Y+ L++G  ++ K   AF   ++M++
Sbjct: 441 NSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 500

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +G  PN  +YT +I  L ++  + +A   F   + +G   D  ++  LI G   + +   
Sbjct: 501 QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAME 560

Query: 367 CYE 369
            Y+
Sbjct: 561 AYQ 563


>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
          Length = 555

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 188/403 (46%), Gaps = 13/403 (3%)

Query: 92  ELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS-- 149
           E AL   G  L   L   V++R      L +R+++WAS Q  Y H    Y  +I  LS  
Sbjct: 100 EAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQGGYEHEAATYNDVIDILSGT 159

Query: 150 --KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
             K R+FG +  +++ M++ + + +  +  + ++R +    +            +    P
Sbjct: 160 RYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKRRVRMRTPP 219

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
           +      LLDA CK+  V+EA  +F  ++ +   +   ++ L +GWC+      A  VL 
Sbjct: 220 ETDALNVLLDAFCKSGMVREAEAVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLE 279

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQALC 324
           +M      P+   YN  +  +   G +++A +L + MR +G     P A +Y+++I AL 
Sbjct: 280 EMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALA 339

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           +  +MEE      EM + GC  DV TY  LI G     K+D  Y +LD M + G  P+ +
Sbjct: 340 KAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIV 399

Query: 385 TY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           TY   L ++   +K ++  E  E M E     C P V  YN+++ +  ++ E   A+N+W
Sbjct: 400 TYNCFLKVLCGLQKADDALELCERMIEAH---CEPSVHTYNMLMVMFFEMREPDRAINIW 456

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            EM+        D++  M+ G    G   +A     E++ RG+
Sbjct: 457 IEMDKRGCHRAVDTYETMIDGLFDSGRTEDATTLLDEVINRGM 499



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 120/266 (45%), Gaps = 39/266 (14%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R ++  L   E + IL   +  AR  K+A++VL+EM +    P+ F +   +D+ C    
Sbjct: 246 RVKRKLLGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGL 305

Query: 225 VKEAAKLFDEMRER----FKPSLRHFTSLLYGWCKEGKL--------------------- 259
           V EA  LF+ MR        P+ + ++ ++    K G++                     
Sbjct: 306 VSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVST 365

Query: 260 -------------VEAKY-VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
                        ++A Y VL +M  AGF PDIV YN  L     + K  DA EL + M 
Sbjct: 366 YKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMI 425

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
              C+P+ ++Y +L+     M + + A   ++EM++ GC   V TY T+I G   S + +
Sbjct: 426 EAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTE 485

Query: 366 RCYEILDSMIQRGILPNQLTYLHIML 391
               +LD +I RG+  +   +  IML
Sbjct: 486 DATTLLDEVINRGMKLSYKKFDAIML 511



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 10/318 (3%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P+    N LL  + + G + +A  +   ++RK    NA +Y++L    CR    + A + 
Sbjct: 219 PETDALNVLLDAFCKSGMVREAEAVFSRVKRKLLG-NAETYSILFFGWCRARDPKRAMKV 277

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIMLA 392
             EM +     +  TY   I  FC +  +    ++ + M   G     P   TY  ++ A
Sbjct: 278 LEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAA 337

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K  ++EEC EL+ EMRK GC+PDVS Y  +I     + +L  A  V +EM  A   P 
Sbjct: 338 LAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPD 397

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLLRAQKVEMAK 510
               +V  + FL   C ++  +   E+  R + +   P   T   L+      ++ + A 
Sbjct: 398 ----IVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAI 453

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++W  +  +GC   V  +   I  LF +G  ++A +   ++++  +      F  +M  L
Sbjct: 454 NIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATTLLDEVINRGMKLSYKKFDAIMLRL 513

Query: 571 KKLYNRQIAAEITEKVRK 588
             + N      ++E +R+
Sbjct: 514 SAVGNLGAIHRLSEHMRR 531



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 63/319 (19%)

Query: 272 AGFEPDIVVYNN---LLSGYA----QMGKMTDAFELLKEMRRKGCDPNANSYTVLI---- 320
            G+E +   YN+   +LSG      Q G + D  + +K  RR    P  +   +L     
Sbjct: 140 GGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKR-RRTRSVPVDDLLGILRAYTE 198

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
           + L  + K+ +  R  V M R+  E D +    L+  FCKS  + R  E + S ++R +L
Sbjct: 199 KHLTHLRKLAKKRR--VRM-RTPPETDALN--VLLDAFCKSGMV-REAEAVFSRVKRKLL 252

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
            N  TY                                   +++    C+  + K A+ V
Sbjct: 253 GNAETY-----------------------------------SILFFGWCRARDPKRAMKV 277

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNS 499
             EM     +P   ++   +  F   G + EA + F+ M   G  +S+P   T   ++ +
Sbjct: 278 LEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAA 337

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC-LDMMDADVMP 558
           L +A ++E   ++ S +   GC  +V  +   I  +     +  A  YC LD M     P
Sbjct: 338 LAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAA--YCVLDEMAKAGFP 395

Query: 559 QPDT-----FAKLMRGLKK 572
            PD      F K++ GL+K
Sbjct: 396 -PDIVTYNCFLKVLCGLQK 413


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 203/422 (48%), Gaps = 19/422 (4%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           V L  GL  ++++R  D          WA     + HS D Y   +  L K +K+  +  
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            +E MR +K  L+T      +MRRFA A   ++A+ + D + ++G E +      LLD L
Sbjct: 143 FVERMRGDK--LVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 200

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           CK   V++A  +  +++    P+   F   ++GWCK  ++ EA + + +MK  GF P ++
Sbjct: 201 CKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVI 260

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  ++  Y Q  +    +E+L EM   G  PN+ +YT ++ +L   ++ EEA R    M
Sbjct: 261 SYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRM 320

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKKEE 398
           +RSGC+ D + Y  LI    ++ +++    +    M + G+  N  TY  ++  +   +E
Sbjct: 321 KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDE 380

Query: 399 LEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTD 454
            ++ +EL+ EM     C PDV  Y  ++R   K G++ E   +  EM      SL   T 
Sbjct: 381 EDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTY 440

Query: 455 SFVVMVHGFLGQGCLIEACEY----FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           +F++       + C    CE+    F+EM+ + +   P++ T   LL  + +    E A+
Sbjct: 441 TFLIQ------RLCRANMCEWAYCLFEEMISQDI--TPRHRTCLLLLEEVKKKNMHESAE 492

Query: 511 DV 512
            +
Sbjct: 493 RI 494



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN  H+++++   I    K  +       ++EM+    +P +I+   +  ++R +     
Sbjct: 222 PN-AHTFNIF---IHGWCKANRVEEALWTIQEMKGHGFRPCVIS---YTTIIRCYCQQFE 274

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
             K  E+L EM   G  P+   +  ++ +L      +EA ++   M R   KP    +  
Sbjct: 275 FIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNC 334

Query: 249 LLYGWCKEGKLVEAKYVL-VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L++   + G+L EA+ V  V+M + G   +   YN++++ Y    +   A ELLKEM   
Sbjct: 335 LIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394

Query: 308 G-CDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEADVVTYTTLISGFCKSRKID 365
             C+P+ ++Y  L+++  +   + E  +   EM  +     D  TYT LI   C++   +
Sbjct: 395 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCE 454

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             Y + + MI + I P   T L ++L   KK+ + E  E +  + K
Sbjct: 455 WAYCLFEEMISQDITPRHRTCL-LLLEEVKKKNMHESAERIEHIMK 499



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 8/240 (3%)

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG   ++++Y + +  L + +K +   + FVE  R      + T   ++  F  + + + 
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRM-KEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEE 173

Query: 367 CYEILDSMIQRGILPN--QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
              I D + + G+  N   +  L   L  EK+ E    V L     K    P+   +N+ 
Sbjct: 174 AVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQ---LKSHITPNAHTFNIF 230

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK   ++EA+    EM+     P   S+  ++  +  Q   I+  E   EM   G 
Sbjct: 231 IHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANG- 289

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            S P   T   +++SL   ++ E A  V + +   GC+ +   +   IH+L   G ++EA
Sbjct: 290 -SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEA 348


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 203/422 (48%), Gaps = 19/422 (4%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           V L  GL  ++++R  D          WA     + HS D Y   +  L K +K+  +  
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            +E MR +K  L+T      +MRRFA A   ++A+ + D + ++G E +      LLD L
Sbjct: 143 FVERMRGDK--LVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 200

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           CK   V++A  +  +++    P+   F   ++GWCK  ++ EA + + +MK  GF P ++
Sbjct: 201 CKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVI 260

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  ++  Y Q  +    +E+L EM   G  PN+ +YT ++ +L   ++ EEA R    M
Sbjct: 261 SYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRM 320

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKKEE 398
           +RSGC+ D + Y  LI    ++ +++    +    M + G+  N  TY  ++  +   +E
Sbjct: 321 KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDE 380

Query: 399 LEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTD 454
            ++ +EL+ EM     C PDV  Y  ++R   K G++ E   +  EM      SL   T 
Sbjct: 381 EDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTY 440

Query: 455 SFVVMVHGFLGQGCLIEACEY----FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           +F++       + C    CE+    F+EM+ + +   P++ T   LL  + +    E A+
Sbjct: 441 TFLIQ------RLCRANMCEWAYCLFEEMISQDI--TPRHRTCLLLLEEVKKKNMHESAE 492

Query: 511 DV 512
            +
Sbjct: 493 RI 494



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN  H+++++   I    K  +       ++EM+    +P +I+   +  ++R +     
Sbjct: 222 PN-AHTFNIF---IHGWCKANRVEEALWTIQEMKGHGFRPCVIS---YTTIIRCYCQQFE 274

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
             K  E+L EM   G  P+   +  ++ +L      +EA ++   M R   KP    +  
Sbjct: 275 FIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNC 334

Query: 249 LLYGWCKEGKLVEAKYVL-VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L++   + G+L EA+ V  V+M + G   +   YN++++ Y    +   A ELLKEM   
Sbjct: 335 LIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESS 394

Query: 308 G-CDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEADVVTYTTLISGFCKSRKID 365
             C+P+ ++Y  L+++  +   + E  +   EM  +     D  TYT LI   C++   +
Sbjct: 395 NLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCE 454

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             Y + + MI + I P   T L ++L   KK+ + E  E +  + K
Sbjct: 455 WAYCLFEEMISQDITPRHRTCL-LLLEEVKKKNMHESAERIEHIMK 499



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 8/240 (3%)

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           KG   ++++Y + +  L + +K +   + FVE  R      + T   ++  F  + + + 
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRM-KEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEE 173

Query: 367 CYEILDSMIQRGILPN--QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
              I D + + G+  N   +  L   L  EK+ E    V L     K    P+   +N+ 
Sbjct: 174 AVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQ---LKSHITPNAHTFNIF 230

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK   ++EA+    EM+     P   S+  ++  +  Q   I+  E   EM   G 
Sbjct: 231 IHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANG- 289

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            S P   T   +++SL   ++ E A  V + +   GC+ +   +   IH+L   G ++EA
Sbjct: 290 -SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEA 348


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 230/531 (43%), Gaps = 66/531 (12%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     +  ++K   K    G    L+E M+K      + E + I +        +
Sbjct: 290 RPNVV----TFNLMLKGFCKHGMMGDARGLVETMKKVG-NFDSLECYNIWLMGLLRNGEL 344

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSL 249
            +A  VLDEM   G EP+ + +  ++D LC+N  + +A  L D  MR    P    +++L
Sbjct: 345 LEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTL 404

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAG-----------------------------------F 274
           L+G+C  GK+ EAK VL +M   G                                   +
Sbjct: 405 LHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCY 464

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG----------------------CDPN 312
           +PD V  N +++G  + G++  A E++ EM   G                      C P+
Sbjct: 465 QPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPD 524

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT LI  LC++ ++EEA + F+EM       D VTY T I  FCK  KI   + +L 
Sbjct: 525 GITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLK 584

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M + G      TY  ++L      ++ E   L  EM++ G  PD+  YN +I   C+ G
Sbjct: 585 DMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGG 644

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           + K+A+++ +EM    +SP   SF +++  F        ACE F+  +    +   +   
Sbjct: 645 KAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALN---ICGRKEAL 701

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              + N LL   ++  AK+++   + +   L  + +   I  L  +  + +A S    ++
Sbjct: 702 YSLMFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLI 761

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRR 603
           D        +F  ++ GL K  N++ A E+ +++ ++  E +   + Y  R
Sbjct: 762 DKGYGFDHASFMPVIDGLSKRGNKRQADELAKRMMELELEDRPVDRTYSNR 812



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 207/490 (42%), Gaps = 72/490 (14%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           V+  L+ RF    M  +A  +++ M + G  PD   F   + ALC+   V EA+++F +M
Sbjct: 221 VYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDM 280

Query: 236 RERF-----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           +        +P++  F  +L G+CK G + +A+ ++  MK  G    +  YN  L G  +
Sbjct: 281 QMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLR 340

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            G++ +A  +L EM  KG +PNA +Y +++  LCR   + +A      M R+G   D V 
Sbjct: 341 NGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVA 400

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL---TYLHIMLAHEKKEELEECVELMG 407
           Y+TL+ G+C   K+     +L  MI+ G  PN     T LH +    +  E EE ++ M 
Sbjct: 401 YSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMN 460

Query: 408 EMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEM---------------------- 444
           E     C  PD    N+V+   C+ GEL +A  + +EM                      
Sbjct: 461 E----KCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIH 516

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
             ++  P   ++  +++G    G L EA + F EM+ + L   P   T    + S  +  
Sbjct: 517 NVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNL--RPDSVTYDTFIWSFCKQG 574

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-------------------------- 538
           K+  A  V   +   GC   +  +   I  L SN                          
Sbjct: 575 KISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYN 634

Query: 539 ---------GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
                    G  K+A S   +M+D  + P   +F  L++   K  + ++A E+ E    +
Sbjct: 635 NIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNI 694

Query: 590 AAERQITFKM 599
              ++  + +
Sbjct: 695 CGRKEALYSL 704



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 151/369 (40%), Gaps = 59/369 (15%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERF---KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           ++  L +   V +A   F  +R +F    PSL  +  LL    +  +     ++   M  
Sbjct: 84  MVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYSDMLA 143

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
           A   P    +N L+    +      A +L ++M +KGC PN  +  +L++ LCR   +++
Sbjct: 144 ARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQ 203

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A    V    S   A+ V Y TL+S FC+                               
Sbjct: 204 A-LELVNNNNSCRIANRVVYNTLVSRFCR------------------------------- 231

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA-ASLS 450
             E   E E  VE M E+   G +PDV  +N  I   C+ G++ EA  ++ +M+  A L 
Sbjct: 232 -EEMNNEAERLVERMNEL---GVLPDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELG 287

Query: 451 ---PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTLKAL------LNSL 500
              P   +F +M+ GF   G + +A         RGL+ +  + G   +L      L  L
Sbjct: 288 LPRPNVVTFNLMLKGFCKHGMMGDA---------RGLVETMKKVGNFDSLECYNIWLMGL 338

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
           LR  ++  A+ V   +V KG E N Y + I +  L  N  + +A      MM   V P  
Sbjct: 339 LRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDT 398

Query: 561 DTFAKLMRG 569
             ++ L+ G
Sbjct: 399 VAYSTLLHG 407


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 219/449 (48%), Gaps = 7/449 (1%)

Query: 140 VYRALIKSLSKMRKFG-AVWALMEEMRKEKPQL-ITTEVFVILMRRFASARMVKKAIEVL 197
           V R+ ++S +++R+F  AV  ++ ++  +   +   T VF  L+        +K    V 
Sbjct: 126 VVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVY 185

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +EM   G +PD      L+ ALC+   V+ A  + +EM      P    FT+L+ G+ +E
Sbjct: 186 NEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEE 245

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G +  A  V  +M +AG  P  V  N L++GY +MG++ DA   +++    G +P+  +Y
Sbjct: 246 GSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTY 305

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
              +  LC+   +  A +    M + G + DV TY T+I+   K+ ++D    I++ M+ 
Sbjct: 306 NTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVD 365

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RG LP+  T+  +++A   +  LEE ++L  E+   G  PDV  +N++I   CK+G+   
Sbjct: 366 RGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHL 425

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG-TLKA 495
            + ++ EM+++  +P   ++ +++      G L  A +   EM   G    P+   T   
Sbjct: 426 GIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG---CPRSTVTYNT 482

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           ++++L +  ++E A++V+  +  +G   +   +   I  L     + +A      M+   
Sbjct: 483 IIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG 542

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           + P   T+  ++    K  N + AA+I E
Sbjct: 543 LQPNNITYNSILTHYCKQGNIKKAADILE 571



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 216/464 (46%), Gaps = 15/464 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL--ITTEVFV---ILMRRFASA 187
           ++  S  VY  +++ L     F  +  L+ EMR+E  Q+  +    FV     +RRF  A
Sbjct: 84  DFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDA 143

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             V   +  LD    +G + D  VF  LL+ L + S +K    +++EM  R  +P +   
Sbjct: 144 --VDLVLNQLDN-DTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTL 200

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L+   C+  ++  A  +L +M   G  PD   +  L+ G+ + G +  A  +  +M  
Sbjct: 201 NTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMME 260

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVTYTTLISGFCKSRKID 365
            GC P   +  VLI   C+M ++E+A   +++ E   G E D VTY T + G C++  + 
Sbjct: 261 AGCSPTGVTVNVLINGYCKMGRVEDA-LGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVS 319

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              +++D M+Q G  P+  TY  ++    K  EL+E   ++ +M   GC+PD + +N +I
Sbjct: 320 HALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 379

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
                   L+EA+++  E+    LSP   +F ++++     G        F+EM   G  
Sbjct: 380 VALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG-- 437

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T   L++ L    K+  A D+ + + + GC  +   +   I +L     ++EA 
Sbjct: 438 CTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEA- 496

Query: 546 SYCLDMMDADVMPQPD-TFAKLMRGLKKLYNRQIAAEITEKVRK 588
               D MDA  + +   TF  L+ GL K      A E+ E++ K
Sbjct: 497 EEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVK 540



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 193/408 (47%), Gaps = 7/408 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  +T   FV           V  A++V+D M + G +PD F +  +++ L KN  + E
Sbjct: 299 EPDQVTYNTFV---HGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355

Query: 228 AAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  + ++M +R   P    F +L+     + +L EA  +  ++   G  PD+  +N L++
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILIN 415

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              ++G       L +EM+  GC P+  +Y +LI  LC M K+  A     EME +GC  
Sbjct: 416 ALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPR 475

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             VTY T+I   CK  +I+   E+ D M  +GI  + +T+  ++    K + +++  EL+
Sbjct: 476 STVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELI 535

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M K G  P+   YN ++   CK G +K+A ++   M A        ++  +++G    
Sbjct: 536 EQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKA 595

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G    A +  + M  +G+   P+      ++ SL R   +  A +++  +   G   +  
Sbjct: 596 GRTQVALKLLRGMRIKGIRPTPK--AYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDAL 653

Query: 527 AWTIWIHSLF-SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            + I   SL    G +KEA  + ++M++   MP+  +F  L  GL  L
Sbjct: 654 TYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNL 701



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 5/394 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
           +L+  +     V+ A+  + +    G EPD+  +   +  LC+N  V  A K+ D M +E
Sbjct: 272 VLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQE 331

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              P +  + +++    K G+L EAK ++ QM D G  PD   +N L+   +   ++ +A
Sbjct: 332 GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEA 391

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            +L +E+  KG  P+  ++ +LI ALC++       R F EM+ SGC  D VTY  LI  
Sbjct: 392 LDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C   K+    ++L+ M   G   + +TY  I+ A  KK  +EE  E+  +M   G    
Sbjct: 452 LCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRS 511

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              +N +I   CK   + +A  +  +M    L P   ++  ++  +  QG + +A +  +
Sbjct: 512 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILE 571

Query: 478 EMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            M   G  +    YGT   L+N L +A + ++A  +   +  KG      A+   I SLF
Sbjct: 572 TMTANGFEIDVVTYGT---LINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLF 628

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              ++++A +   +M +    P   T+  + R L
Sbjct: 629 RRNNLRDALNLFREMTEVGEPPDALTYKIVFRSL 662



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 51/208 (24%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI  L K ++      L+E+M KE  +P  IT   +  ++  +     +KKA ++L+
Sbjct: 515 FNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNIT---YNSILTHYCKQGNIKKAADILE 571

Query: 199 EMPKYGCEPDEFVFGCLLDALCK-----------------------------------NS 223
            M   G E D   +G L++ LCK                                    +
Sbjct: 572 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 631

Query: 224 SVKEAAKLFDEMRERFKP--SLRH---FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           ++++A  LF EM E  +P  +L +   F SL  G    G + EA   LV+M + GF P+ 
Sbjct: 632 NLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGG---GPIKEAFDFLVEMVNKGFMPEF 688

Query: 279 VVYNNLLSGYAQMGK---MTDAFELLKE 303
             +  L  G   +G    +  A EL+ E
Sbjct: 689 SSFRMLAEGLLNLGMDDYLISAIELIIE 716


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/481 (27%), Positives = 220/481 (45%), Gaps = 10/481 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ +++KM KF  V +L E+M+       L T  +F+     F     +  A+ +L 
Sbjct: 78  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFI---NYFCRRSQLSLALAILG 134

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K G  P       LL+  C  + + EA  L D+M E  ++P    FT+L++G  +  
Sbjct: 135 KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHN 194

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  ++ +M   G +PD+V Y  +++G  + G+   A  LL +M +   + +   Y 
Sbjct: 195 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYN 254

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+ + M++A   F +ME  G + DV TY  LIS  C   +      +L  M+++
Sbjct: 255 TIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEK 314

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKE 436
            I P+ + +  ++ A  K+ +L E  +L  EM K   C PDV  YN +I+  CK   ++E
Sbjct: 315 NINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEE 374

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
            + V+ EM    L   T ++  ++HGF        A   FK+MV  G+   P   T   L
Sbjct: 375 GMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV--HPDIMTYNIL 432

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L+ L     VE A  V+  +  +  +L++  +T  I +L   G V++       +    V
Sbjct: 433 LDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGV 492

Query: 557 MPQPDTFAKLMRGL-KKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
            P   T+  +M G  +K    +  A   E           T+    R   RD  E A  +
Sbjct: 493 KPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAE 552

Query: 616 V 616
           +
Sbjct: 553 L 553



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 185/410 (45%), Gaps = 2/410 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-R 238
           L R+      +  AI +  +M K    P    F  LL A+ K +       L ++M+   
Sbjct: 46  LSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG 105

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
              +L  ++  +  +C+  +L  A  +L +M   G+ P IV  N+LL+G+    ++++A 
Sbjct: 106 ISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAV 165

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L+ +M   G  P+  ++T L+  L +  K  EA      M   GC+ D+VTY  +I+G 
Sbjct: 166 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGL 225

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK  + D    +L+ M +  I  + + Y  I+    K + +++  +L  +M   G  PDV
Sbjct: 226 CKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDV 285

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   C  G   +A  + ++M   +++P    F  ++  F+ +G L+EA + + E
Sbjct: 286 FTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDE 345

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           MV +     P       L+    + ++VE   +V+  +  +G   N   +T  IH  F  
Sbjct: 346 MV-KSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQA 404

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
                A      M+   V P   T+  L+ GL    N + A  + E ++K
Sbjct: 405 RDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQK 454



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 169/363 (46%), Gaps = 42/363 (11%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y A+I  L K  +      L+ +M K K +     ++  ++      + +
Sbjct: 212 QPDLV----TYGAVINGLCKRGEPDLALNLLNKMEKGKIE-ADVVIYNTIIDGLCKYKHM 266

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A ++ ++M   G +PD F +  L+  LC      +A++L  +M E+   P L  F +L
Sbjct: 267 DDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNAL 326

Query: 250 LYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +  + KEGKLVEA+ +  +M K     PD+V YN L+ G+ +  ++ +  E+ +EM ++G
Sbjct: 327 IDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRG 386

Query: 309 --------------------CD---------------PNANSYTVLIQALCRMEKMEEAN 333
                               CD               P+  +Y +L+  LC    +E A 
Sbjct: 387 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETAL 446

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F  M++   + D+VTYTT+I   CK+ K++  +++  S+  +G+ PN +TY  +M   
Sbjct: 447 VVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 506

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            +K   EE   L  EM++ G +P+   YN +IR   + G+   +  +  EM +   +   
Sbjct: 507 CRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDA 566

Query: 454 DSF 456
            +F
Sbjct: 567 STF 569



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 7/291 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L    ++     L+ +M  +   P L+    F  L+  F     + +A ++ D
Sbjct: 288 YNPLISCLCNYGRWSDASRLLSDMLEKNINPDLV---FFNALIDAFVKEGKLVEAEKLYD 344

Query: 199 EMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           EM K   C PD   +  L+   CK   V+E  ++F EM +R    +   +T+L++G+ + 
Sbjct: 345 EMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQA 404

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
                A+ V  QM   G  PDI+ YN LL G    G +  A  + + M+++    +  +Y
Sbjct: 405 RDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTY 464

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T +I+ALC+  K+E+    F  +   G + +VVTYTT++SGFC+    +    +   M +
Sbjct: 465 TTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKE 524

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            G LPN  TY  ++ A  +  +     EL+ EMR  G   D S + +V  +
Sbjct: 525 DGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNM 575



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 84/200 (42%), Gaps = 2/200 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ + L G+M K    P +  ++ ++    K+ +    +++  +M+   +S    ++ 
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           + ++ F  +  L  A     +M+  G    P   TL +LLN      ++  A  +   +V
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGY--GPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
             G + +   +T  +H LF +    EA +    M+     P   T+  ++ GL K     
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232

Query: 578 IAAEITEKVRKMAAERQITF 597
           +A  +  K+ K   E  +  
Sbjct: 233 LALNLLNKMEKGKIEADVVI 252


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 189/384 (49%), Gaps = 4/384 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +LI  L K  +    + L E+M  +  ++    V+  L++ F      +   ++  EM  
Sbjct: 482 SLIDGLGKQGRVDDAYRLYEQML-DSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIH 540

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
            GC PD  +    +D + K     +   LF+E++ R F P +  ++ L++G  K G   E
Sbjct: 541 RGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARE 600

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
              +   MK+ G   D   YN  + G+ + GK+  A++LL+EM+ KG  P   +Y  +I 
Sbjct: 601 TYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVID 660

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            L ++++++EA   F E + +G E +VV Y++LI GF K  +ID  Y I++ ++Q+G+ P
Sbjct: 661 GLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 720

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  T+  ++ A  K EE+ E +     M+ +   P+   Y+++I   C++ +  +A   W
Sbjct: 721 NVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFW 780

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM+   L P T ++  M+ G    G + EA   F+     G    P   +  A++  L 
Sbjct: 781 QEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANG--GVPDSASYNAIIEGLS 838

Query: 502 RAQKVEMAKDVWSCIVTKGCELNV 525
            +++   A  ++     KGC ++ 
Sbjct: 839 YSRRAMEAYKIFEETRMKGCNIHT 862



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 161/317 (50%), Gaps = 6/317 (1%)

Query: 159 ALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           AL EE++     P +++   + IL+     A   ++  E+   M + GC  D   +   +
Sbjct: 568 ALFEEIKSRGFIPDVMS---YSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFI 624

Query: 217 DALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           D  CK+  V +A +L +EM+ + + P++  + S++ G  K  +L EA  +  + K  G E
Sbjct: 625 DGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLE 684

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
            ++V+Y++L+ G+ ++G++ +A+ +++E+ +KG  PN  ++  L+ AL + E++ EA   
Sbjct: 685 LNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVC 744

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F  M+      + +TY+ LI+G C+ RK ++ +     M ++G+ PN +TY  ++    K
Sbjct: 745 FQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAK 804

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              + E   L    +  G VPD ++YN +I          EA  ++ E      +  T +
Sbjct: 805 AGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKT 864

Query: 456 FVVMVHGFLGQGCLIEA 472
            + ++       CL +A
Sbjct: 865 CIALLDALQKDECLEQA 881



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 127/550 (23%), Positives = 233/550 (42%), Gaps = 56/550 (10%)

Query: 69  EFSHDVE-KIFRILKKFHSRLPKLELALQ----------HSGVVLRPGLTERVINRCGDA 117
           E  ++V   +F  + +  +R  +L+ AL           H+ +VL        I+  G A
Sbjct: 226 ELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLY----NVCIDCFGKA 281

Query: 118 GNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
           G +   +  +   + + +   DV Y ++I  L K  +      + E+M + +  +     
Sbjct: 282 GKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNR-NVPCAYA 340

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  ++  + SA    +A  +L+     GC P    + C+L  L K   + EA + F+EM+
Sbjct: 341 YNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK 400

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG----------------------- 273
           +   P+L  +  L+   CK G++  A  V   MK+AG                       
Sbjct: 401 KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDE 460

Query: 274 ----FE--------PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
               FE        PD V + +L+ G  + G++ DA+ L ++M      PNA  YT LI+
Sbjct: 461 ACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIK 520

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           +  +  + E+ ++ F EM   GC  D+      +    K+ +  +   + + +  RG +P
Sbjct: 521 SFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIP 580

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + ++Y  ++    K     E  EL   M++ GCV D   YN  I   CK G++ +A  + 
Sbjct: 581 DVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLL 640

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSL 500
            EM+     P   ++  ++ G      L EA   F+E    GL L+   Y +   L++  
Sbjct: 641 EEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSS---LIDGF 697

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +  +++ A  +   ++ KG   NVY W   + +L     + EA     +M +    P  
Sbjct: 698 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNH 757

Query: 561 DTFAKLMRGL 570
            T++ L+ GL
Sbjct: 758 ITYSILINGL 767



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/529 (21%), Positives = 223/529 (42%), Gaps = 83/529 (15%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASA 187
           ++  Y  S  ++  +I+  ++  +  A  +L++EM   K   +  ++  + + +  F  A
Sbjct: 225 QELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEM---KSNCLHADIVLYNVCIDCFGKA 281

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHF 246
             V  A +   E+  +G  PD+  +  ++  LCK + + EA ++F++M + R  P    +
Sbjct: 282 GKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAY 341

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +++ G+   GK  EA  +L + K  G  P ++ YN +L+   + G++ +A    +EM++
Sbjct: 342 NTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKK 401

Query: 307 K----------------------------------GCDPNANSYTVLIQALCRMEKMEEA 332
                                              G  PN  +  ++I  LC+ +K++EA
Sbjct: 402 DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEA 461

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
              F  M    C  D VT+ +LI G  K  ++D  Y + + M+    +PN + Y  ++ +
Sbjct: 462 CSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKS 521

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K    E+  ++  EM   GC PD+   N  +    K GE  +   ++ E+++    P 
Sbjct: 522 FFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPD 581

Query: 453 TDSFVVMVHGFLG----------------QGCLIEACEY-------------------FK 477
             S+ +++HG +                 QGC+++   Y                    +
Sbjct: 582 VMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLE 641

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM  +G    P   T  ++++ L +  +++ A  ++    + G ELNV  ++  I     
Sbjct: 642 EMKTKG--RQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGK 699

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            G + EA     ++M   + P   T+  L+  L K      A EI E +
Sbjct: 700 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK------AEEINEAL 742



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 196/439 (44%), Gaps = 29/439 (6%)

Query: 195 EVLDEMPKYGCEPD-----EFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           ++L EM   G  P      E +  C+     K++ ++E   L   MR+ +F+P+   +T+
Sbjct: 149 QILGEMSIAGFGPSTKTCIELILSCI-----KSNKLREGFDLIQCMRKFKFRPAFSAYTT 203

Query: 249 LLYGWCKEGKLVEAKYVLV---QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           L+        + E+  +L    QM++ G+E  + ++  ++  +A+ G++  A  LL EM+
Sbjct: 204 LIGAL---SSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMK 260

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
                 +   Y V I    +  K++ A + F E++  G   D VTYT++I   CK  ++D
Sbjct: 261 SNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLD 320

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              EI + M Q   +P    Y  +++ +    + +E   L+   +  GC+P V  YN ++
Sbjct: 321 EAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCIL 380

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               K G L EA+  + EM+  + +P   ++ V++      G +  A +    M   GL 
Sbjct: 381 TCLGKKGRLGEALRTFEEMKKDA-APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLF 439

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T+  +++ L +A+K++ A  ++  +  K C  +   +   I  L   G V +A 
Sbjct: 440 --PNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAY 497

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIAAEITEKVRKMAAERQIT 596
                M+D+D +P    +  L++            K++   I    +  +R + A     
Sbjct: 498 RLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCV 557

Query: 597 FKMYKRRGERDLKEKAKKQ 615
           FK  +    R L E+ K +
Sbjct: 558 FKAGETGKGRALFEEIKSR 576



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 165/417 (39%), Gaps = 43/417 (10%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL--RHFT 247
           V+ A+ +  E PK      + V G L  A      V +A   F     +   +L    + 
Sbjct: 82  VENALSLFVESPK-----TDLVIGVLRRA----KDVNQAISYFRWTERKTDQALCPEAYD 132

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SLL    K  K    + +L +M  AGF P       L+    +  K+ + F+L++ MR+ 
Sbjct: 133 SLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKF 192

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              P  ++YT LI AL  +++ +     F +M+  G E  V  +TT+I  F +  ++D  
Sbjct: 193 KFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAA 252

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +LD M    +  + + Y   +    K  +++   +   E++  G +PD   Y  +I +
Sbjct: 253 LSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGV 312

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-- 485
            CK   L EAV ++ +ME     P   ++  M+ G+   G   EA    +    RG +  
Sbjct: 313 LCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPS 372

Query: 486 ------------------------------SAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
                                         +AP   T   L++ L +A +VE A  V   
Sbjct: 373 VIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDA 432

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +   G   NV    I I  L     + EACS    M      P   TF  L+ GL K
Sbjct: 433 MKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGK 489



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRR 183
            +A K+   V     Y   I    K  K    + L+EEM+ +  +P ++T   +  ++  
Sbjct: 605 FYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVT---YGSVIDG 661

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPS 242
            A    + +A  + +E    G E +  ++  L+D   K   + EA  + +E M++   P+
Sbjct: 662 LAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 721

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  +  LL    K  ++ EA      MK+    P+ + Y+ L++G  ++ K   AF   +
Sbjct: 722 VYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQ 781

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM+++G  PN  +YT +I  L +   + EA+  F   + +G   D  +Y  +I G   SR
Sbjct: 782 EMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSR 841

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +    Y+I +    +G   +  T + ++ A +K E LE+   +   +R+I 
Sbjct: 842 RAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQAAIVGAVLREIA 892


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 176/362 (48%), Gaps = 2/362 (0%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQP-NYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           P L   V+ R  + G    +++ +       YVH    +   I   +++     VW+L+ 
Sbjct: 50  PNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIH 109

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            MR  +    + + F I+  R+ASA    KA+++   M ++GC  D   F  +LD LCK+
Sbjct: 110 RMRSLRIG-PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 168

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
             V++A +LF  +R RF      +  +L GWC   +  +   VL +M + G  P++  YN
Sbjct: 169 KRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYN 228

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L G+ + G++  A+E   EM+++ C+ +  +YT ++       +++ A   F EM R 
Sbjct: 229 TMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIRE 288

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G    V TY  +I   CK   ++    + + M++RG  PN  TY  ++       E    
Sbjct: 289 GVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRG 348

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            ELM  M   GC P+   YN++IR   +  E+++A+ ++ +M +    P  D++ +++ G
Sbjct: 349 EELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISG 408

Query: 463 FL 464
             
Sbjct: 409 MF 410



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 100/204 (49%), Gaps = 6/204 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  ++K   +  +    W    EM+K   + I    +  ++  F  A  +K+A  V DE
Sbjct: 226 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE-IDVVTYTTVVHGFGVAGEIKRARNVFDE 284

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + G  P    +  ++  LCK  +V+ A  +F+EM R  ++P++  +  L+ G    G+
Sbjct: 285 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 344

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
               + ++ +M++ G EP+   YN ++  Y++  ++  A  L ++M    C PN ++Y +
Sbjct: 345 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 404

Query: 319 LIQALCRMEKMEE----ANRAFVE 338
           LI  +   ++ E+     N+AF +
Sbjct: 405 LISGMFVRKRSEDMVVAGNQAFAK 428



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 112/233 (48%), Gaps = 11/233 (4%)

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + ++  M    I P+  T+  +   +    + ++ V+L   M + GC  D++++N ++ +
Sbjct: 105 WSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDV 164

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRG 483
            CK   +++A  ++  +     S  T ++ V+++G+    CLI+      E  KEMV RG
Sbjct: 165 LCKSKRVEKAYELFRALRG-RFSVDTVTYNVILNGW----CLIKRTPKTLEVLKEMVERG 219

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +   P   T   +L    RA ++  A + +  +  + CE++V  +T  +H     G +K 
Sbjct: 220 I--NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 277

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           A +   +M+   V+P   T+  +++ L K  N + A  + E++ +   E  +T
Sbjct: 278 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 330


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 182/348 (52%), Gaps = 2/348 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           + E ++ ++     A +  +A+   + M  YGC+PD+  F  ++ +L K     EA   F
Sbjct: 145 SPEPYMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFF 204

Query: 233 DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           D +++RF+P +  +TSL++GWC+ G + EA+ V  +MK AG +P++  Y+ ++    + G
Sbjct: 205 DSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSG 264

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           ++T A ++  EM   GCDPNA ++  L++   +  + E+  + + +M+R GC  D +TY 
Sbjct: 265 QITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYN 324

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            LI   C+   ++   +IL+S +++G   N  ++  I     K  ++     +  +M+ +
Sbjct: 325 FLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDL 383

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
            C P+   YN+++R+          + +  EM+   + P  +++ V++  F G G    A
Sbjct: 384 KCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNA 443

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
             +FKEM+    L  P     + +L  L +A +++  +++   +V +G
Sbjct: 444 YSFFKEMIEEKCLR-PSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRG 490



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y  +I LA K G   EAV+ +N ME     P   +F V++     +   IEA  +F  + 
Sbjct: 149 YMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK 208

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            R     P      +L++   RA  +  A+ V+  +   G + NVY ++I I +L  +G 
Sbjct: 209 DR---FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ 265

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMR 568
           +  A     +M+D    P   TF  LMR
Sbjct: 266 ITRAHDVFSEMIDVGCDPNAITFNNLMR 293



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 3/188 (1%)

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E V     M   GC PD   ++VVI    K     EA + ++ ++     P    +  +V
Sbjct: 164 EAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-RFEPDVVVYTSLV 222

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           HG+   G + EA   F EM   G+   P   T   ++++L R+ ++  A DV+S ++  G
Sbjct: 223 HGWCRAGNISEAERVFGEMKMAGI--QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVG 280

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C+ N   +   +      G  ++       M      P   T+  L+    +  N + A 
Sbjct: 281 CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAV 340

Query: 581 EITEKVRK 588
           +I   V+K
Sbjct: 341 KILNSVKK 348



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S++     I  L  +     ++A M+++ K +P  +T   + ILMR FA  +     +++
Sbjct: 356 SFNPIFGCISKLGDVNSAHRMFAKMKDL-KCRPNTVT---YNILMRMFADKKSTDMVLKL 411

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWC 254
             EM +   EP+   +  L+   C       A   F EM E    +PSL  +  +L    
Sbjct: 412 RKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR 471

Query: 255 KEGKLVEAKYVLVQMKDAGF 274
           K G+L + + ++ +M + GF
Sbjct: 472 KAGQLKKHEELVEKMVNRGF 491


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 205/448 (45%), Gaps = 49/448 (10%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVF 177
           L  R + WA++Q ++ H+   Y A + +L K         + ++M  ++  P + T   +
Sbjct: 19  LASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYT---Y 75

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL------ 231
            I++R          A+E+L +M      P  F+   L+  LCKN  V  A +L      
Sbjct: 76  GIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD 135

Query: 232 ----------------------------FDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
                                       F EM E    PSL  +  LLYG+C+ G++ +A
Sbjct: 136 ECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQA 195

Query: 263 KYVLVQM----KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +L +M    K +   PD+  YN ++SG+ +  ++  A  +L+ M + GC PN  ++  
Sbjct: 196 MTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNT 255

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC   K++EAN  F  M    CE   VTYT LI+G  ++ +ID+  +    M++RG
Sbjct: 256 LLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRG 315

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN  TY  ++       ++E+ +E++  M   G  P+V  Y  VI   CK G+++ A 
Sbjct: 316 VEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERAT 375

Query: 439 NVWNEM---EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            ++N+      A   P + ++  +V+    Q   +EA EYF  MV   L++ P     KA
Sbjct: 376 KLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPH--IYKA 433

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           + + L   Q+ E  + V       G EL
Sbjct: 434 MADGLELVQETEKVERVCLEASAHGIEL 461



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 178/361 (49%), Gaps = 9/361 (2%)

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F +   L+AL K     +A K+FD+M  +   P++  +  +L G C + K   A  +L  
Sbjct: 38  FTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQD 97

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M+     P   + N L+S   + GK+  A+EL K +  + C  +  SY +L   LC+ ++
Sbjct: 98  MESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQ 156

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ----RGILPNQL 384
           ++ A   F EME +     ++TY  L+ G+C++ ++++   +L+ MI+      ++P+  
Sbjct: 157 IDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMY 216

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           +Y  ++    K  +L     ++  M K GC P+V  +N ++   C  G+L EA  ++  M
Sbjct: 217 SYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
              +  P   ++ V++ G      + +A +YF +M+ RG+   P   T  AL+  L  A 
Sbjct: 277 VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV--EPNVYTYTALIGGLCDAN 334

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTF 563
           KVE A ++   + + G E NV  +T  I +L   G ++ A     D M +     +PD++
Sbjct: 335 KVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSY 394

Query: 564 A 564
           A
Sbjct: 395 A 395



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 145/327 (44%), Gaps = 7/327 (2%)

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           F+  +  YN  L+   + G  + A ++  +M  K C PN  +Y ++++ LC   K + A 
Sbjct: 33  FQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAAL 92

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               +ME             L+S  CK+ K+D  YE+   +     L ++++Y  +    
Sbjct: 93  ELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSL-DRISYNMLTYGL 151

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM----EAASL 449
            K ++++  + + GEM +   VP +  YN ++   C+ G +++A+ +  EM    + + +
Sbjct: 152 CKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDV 211

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P   S+  ++ GF     L  A    + M+  G   +P   T   LL+ L    K++ A
Sbjct: 212 VPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG--CSPNVVTFNTLLDGLCLTGKLDEA 269

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             ++  +V + CE     +T+ I        + +A  Y +DM+   V P   T+  L+ G
Sbjct: 270 NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGG 329

Query: 570 LKKLYNRQIAAEITEKVRKMAAERQIT 596
           L      + A EI +++     E  + 
Sbjct: 330 LCDANKVEDALEILKRMSSTGREPNVV 356


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 231/489 (47%), Gaps = 8/489 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNL--GYRYYMWASKQ 131
           V    R+L+   S  PKLE  L+    VL P    R + R    G++   + ++ WA +Q
Sbjct: 62  VRDTCRLLELRESWSPKLEAQLRQLLRVLSPPQV-RAVLRAQARGDVRRAFEFFRWADRQ 120

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
             Y H+ +V+  ++  LS  R       ++  M +   +   TE F  LM  ++ A  ++
Sbjct: 121 WRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRR-GTEQFAQLMLSYSRAGKLR 179

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLL 250
            A+ VL  M K GC PD  +    ++ L     V +A +  + MR    +P +  +  L+
Sbjct: 180 SAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLI 239

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GC 309
            G C   ++V+A  ++  M   G  PD + Y  ++S   +  ++ +   LL+ MR   G 
Sbjct: 240 KGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGL 299

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y VLI  L +    +EA     E E      D V Y+ ++  FC + ++    E
Sbjct: 300 FPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKE 359

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           I+  MI +G  P+ +TY  ++    +  EL++  ++M  M K  C P+   +  ++   C
Sbjct: 360 IVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLC 419

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K+G+  EA  + N+ E    +P   ++ V++HGF  +G L E+C+   +M+ +G    P 
Sbjct: 420 KVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFF--PT 477

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
              +  L+++L + +K   AKD      +KGC +NV  +T  IH     G ++ A S   
Sbjct: 478 TVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 550 DMMDADVMP 558
           DM  ++  P
Sbjct: 538 DMYLSNRHP 546



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 166/346 (47%), Gaps = 37/346 (10%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--- 236
           L++    AR V  A+E++  M + GC PD+  +  ++  LCK   V+E   L   MR   
Sbjct: 238 LIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDA 297

Query: 237 ----------------------------------ERFKPSLRHFTSLLYGWCKEGKLVEA 262
                                             +RF+     ++++++ +C  G++ EA
Sbjct: 298 GLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEA 357

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           K ++ +M   G +PD+V Y+ ++ G+ ++G++  A +++K M +  C PN  ++T L+  
Sbjct: 358 KEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNG 417

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC++ K  EA     + E        +TY+ ++ GF +  K+    +++  M+Q+G  P 
Sbjct: 418 LCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPT 477

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +    ++ A  K  +  E  + M + +  GC  +V N+  VI    + G+L+ A+++ +
Sbjct: 478 TVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           +M  ++  P   ++ V+V     +G L EA    ++M+ RG+L  P
Sbjct: 538 DMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTP 583



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 172/382 (45%), Gaps = 41/382 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L+K    G     +E +R+ E  +    EV +  ++  F     + +A E++ 
Sbjct: 306 YNVLIHGLAK---HGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVG 362

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   GC+PD   +  ++D  C+   + +A K+   M +   KP+    T+LL G CK G
Sbjct: 363 EMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVG 422

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  +L + ++  + P  + Y+ ++ G+ + GK+ ++ +++ +M +KG  P      
Sbjct: 423 KTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEIN 482

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI ALC+  K  EA     + +  GC  +VV +TT+I GF +   ++    ++D M   
Sbjct: 483 LLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLS 542

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV------------------- 418
              P+ +TY  ++ A  KK  L+E   L+ +M   G +P                     
Sbjct: 543 NRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDL 602

Query: 419 --------------SNYNVVIRLACKLGELKEAVN-VWNEMEAASLSPGTDSFVVMVHGF 463
                         S YN V+   C  G+L EA + ++  +  AS+       ++M   F
Sbjct: 603 LNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILM-ESF 661

Query: 464 LGQGCLIEACEYFKEMVGRGLL 485
           L +G  ++A      M  R L+
Sbjct: 662 LNRGLGLQAYNVACRMFRRNLI 683


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 217/472 (45%), Gaps = 29/472 (6%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVIL 180
           R + W  +Q  Y HS   Y   + +L+K       +   ++M++    P   T   + I+
Sbjct: 23  RLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFT---YSIV 79

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +R    A  + KA E+L ++ + G + +   +  ++D  CK S V +A ++F  M     
Sbjct: 80  LRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGG 139

Query: 241 --PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +  F SLL G C   ++ EA  +   M  AG EP+++ Y+ LL G  + G++ +A 
Sbjct: 140 CVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L +EM  K C P+  +YT  +  LC+  ++ EA     +M   G +AD V ++T+I   
Sbjct: 200 RLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGIL 259

Query: 359 CK-----------------SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           CK                 S  +D   +  + MI R   P+   +  ++ A  K + L +
Sbjct: 260 CKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPD 319

Query: 402 CVEL---MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            V L   M  M++  C P++  YN+++   CK  +L EA  + NEM    LSP   ++  
Sbjct: 320 GVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSA 379

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           +V G    G L  AC+  +EM   G+   P   T  ++LN+L +A KV+ A      +  
Sbjct: 380 LVDGLCKLGKLDRACDLLEEMSKEGVF--PDSFTDASILNALSKAGKVDYALSHLETMKA 437

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +G   ++  +   +  L   G + EA ++   M+ A   P   ++  ++  L
Sbjct: 438 RGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 216/488 (44%), Gaps = 71/488 (14%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   F  L++   S   + +A  + + M K GCEP+   +  LLD LCK   + EA
Sbjct: 142 PDVVT---FNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV-------- 279
            +L++EM E+   P L  +TS + G CK  ++ EA     +M   G + D V        
Sbjct: 199 CRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGI 258

Query: 280 --------------------------------------------VYNNLLSGYAQMGKMT 295
                                                       ++N L+    +  ++ 
Sbjct: 259 LCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLP 318

Query: 296 DA---FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           D    F+ +K M+   C PN  +Y +++  LC+ ++++EA     EM   G   DVVTY+
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            L+ G CK  K+DR  ++L+ M + G+ P+  T   I+ A  K  +++  +  +  M+  
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PD+  YN ++   CK G + EA+    +M AA  +P   S+ +++      G    A
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGA 498

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              F+EMV RG+L  P      +LL+ L R    ++A ++     T  C+ +     + +
Sbjct: 499 HAIFQEMVKRGVL--PDTVLYHSLLDGLARNGLEDLALELLK---TSLCKPDFVMHKMVV 553

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN----RQI---AAEITEK 585
             L   G  ++AC     M DA       T+  ++RGL+KL      RQ+   A+E    
Sbjct: 554 DGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASETHTS 613

Query: 586 VRKMAAER 593
           V +++ E+
Sbjct: 614 VERLSMEK 621



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 183/408 (44%), Gaps = 42/408 (10%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKE--GKLVEAKYVL 266
           V G +L  L K S++    +LFD +  ++ ++ S+  +   L    K   G+L   K+  
Sbjct: 7   VVGEVLRHLGKISTI---VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQ- 62

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            QM+  G+ PD   Y+ +L G  + G++  A ELL ++R  G   N  +Y+V+I   C+ 
Sbjct: 63  -QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKA 121

Query: 327 EKMEEANRAFVEMER-SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
            ++++A   F  M    GC  DVVT+ +L+ G C   ++   + + + M + G  PN ++
Sbjct: 122 SRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++    K   L+E   L  EM +  CVPD+  Y   +   CK   + EA +   +M 
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241

Query: 446 AASLSPGTDSFVV-----------------MVHGFLGQGCLIEACEYFKEMVGRG-LLSA 487
                    +F                   M+      G L EAC+ F+EM+ R    SA
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSA 301

Query: 488 PQYGTL-------KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             + TL       K L + +L  Q+++  K+ +       C  N+  + I + +L     
Sbjct: 302 ELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFY-------CPPNLETYNIMVDNLCKAKQ 354

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           + EA     +M +  + P   T++ L+ GL KL     A ++ E++ K
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSK 402


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 205/467 (43%), Gaps = 41/467 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L+ +++KM KF  V +L E+M+    P       + IL+  F     +  A+ VL +
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPH--NHYTYSILINCFCRRSQLPLALAVLGK 141

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY------- 251
           M K G EP+      LL+  C +  + EA  L D+M    ++P+   F +L++       
Sbjct: 142 MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 201

Query: 252 ----------------------------GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
                                       G CK G    A  +L +M+    EP +++YN 
Sbjct: 202 ASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNT 261

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           ++ G  +   M DA  L KEM  KG  PN  +Y+ LI  LC   +  +A+R   +M    
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              DV T++ LI  F K  K+    ++ D M++R I P+ +TY  ++      + L+E  
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           ++   M    C PDV  YN +I+  CK   ++E + V+ EM    L   T ++ +++ G 
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G    A E FKEMV  G+   P   T   LL+ L +  K+E A  V+  +     E 
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +Y + I I  +   G V++      ++    V P    +  ++ G 
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 191/392 (48%), Gaps = 16/392 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     Y  ++  L K       + L+ +M + K  P ++   ++  ++      +
Sbjct: 218 QPDLV----TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLCKYK 270

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +  A+ +  EM   G  P+   +  L+  LC      +A++L  +M ER   P +  F+
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+  + KEGKLVEA+ +  +M     +P IV Y++L++G+    ++ +A ++ + M  K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            C P+  +Y  LI+  C+ +++EE    F EM + G   + VTY  LI G  ++   D  
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            EI   M+  G+ PN +TY  ++    K  +LE+ + +   +++    P +  YN++I  
Sbjct: 451 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 510

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G++++  +++  +    + P   ++  M+ GF  +G   EA   FKEM   G L  
Sbjct: 511 MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL-- 568

Query: 488 PQYGTLKALLNSLL----RAQKVEMAKDVWSC 515
           P  G    L+ + L    R    E+ K++ SC
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSC 600



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 189/404 (46%), Gaps = 3/404 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L R   S   +  A+ +  EM K    P    F  LL A+ K +       L ++M+   
Sbjct: 52  LSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG 111

Query: 240 KPSLRHFTSLLYG-WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            P   +  S+L   +C+  +L  A  VL +M   G+EP+IV  ++LL+GY    ++++A 
Sbjct: 112 IPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV 171

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L+ +M   G  PN  ++  LI  L    K  EA      M   GC+ D+VTY  +++G 
Sbjct: 172 ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGL 231

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK    D  + +L+ M Q  + P  L Y  I+    K + +++ + L  EM   G  P+V
Sbjct: 232 CKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 291

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y+ +I   C  G   +A  + ++M    ++P   +F  ++  F+ +G L+EA + + E
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           MV R +   P   T  +L+N      +++ AK ++  +V+K C  +V  +   I      
Sbjct: 352 MVKRSI--DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKY 409

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
             V+E      +M    ++    T+  L++GL +  +  +A EI
Sbjct: 410 KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I  L K +       L +EM  +  +P ++T    +  +  +        A  +L
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW---SDASRLL 314

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M +    PD F F  L+DA  K   + EA KL+DEM +R   PS+  ++SL+ G+C  
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-------- 308
            +L EAK +   M      PD+V YN L+ G+ +  ++ +  E+ +EM ++G        
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434

Query: 309 ------------CD---------------PNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                       CD               PN  +Y  L+  LC+  K+E+A   F  ++R
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           S  E  + TY  +I G CK+ K++  +++  ++  +G+ P+ + Y  ++    +K   EE
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 554

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L  EM++ G +P+   YN +IR   + G+ + +  +  EM +   + G  S + +V 
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA-GDASTIGLVT 613

Query: 462 GFLGQG 467
             L  G
Sbjct: 614 NMLHDG 619



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 83/191 (43%), Gaps = 2/191 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ V L GEM K    P +  ++ ++    K+ +    +++  +M+   +     ++ 
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++++ F  +  L  A     +M+  G    P   TL +LLN    ++++  A  +   + 
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGY--EPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
             G + N   +   IH LF +    EA +    M+     P   T+  ++ GL K  +  
Sbjct: 179 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238

Query: 578 IAAEITEKVRK 588
           +A  +  K+ +
Sbjct: 239 LAFNLLNKMEQ 249


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 230/491 (46%), Gaps = 6/491 (1%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLG-YRYYMWAS 129
           SH V    R+L+   S   KLE  L+H    L P     V+           + ++ WA 
Sbjct: 60  SHLVRDTCRLLELRDSWSAKLEAQLRHFLRALTPSQVRAVLRAQAQRDARAAFEFFRWAD 119

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           +Q  Y H+ +V+  ++  LS+ R       ++  M +   +  T + F  LM  ++ A  
Sbjct: 120 RQWKYRHAPEVFDEMLALLSRTRLHDPARRVVRLMIRRGIRRGTRQ-FAHLMLSYSRAGK 178

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           ++ A+ VL  M K GC PD  +    ++ L     V +A +  + MR     P +  +  
Sbjct: 179 LRSAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNC 238

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK- 307
           L+ G C   ++VEA  ++  M   G  PD + Y  ++S   +  ++ + + LL+ MR   
Sbjct: 239 LIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMRNDA 298

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y +LI  L +    +EA     E E      D V Y+ ++  FC + ++   
Sbjct: 299 GIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEA 358

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            EI+  MI +G  P+ +TY  ++    +  EL++  ++M  M K GC P+   +  ++  
Sbjct: 359 KEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNG 418

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK+G+  EA  + N+ E    +P   ++ V++HGF  +G L+E+C+   +M+ +G    
Sbjct: 419 LCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGFF-- 476

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P    +  L+++L + QK   AKD      +KGC +NV  +T  IH     G ++ A S 
Sbjct: 477 PTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSL 536

Query: 548 CLDMMDADVMP 558
             DM   +  P
Sbjct: 537 LDDMYLTNRHP 547



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 192/410 (46%), Gaps = 53/410 (12%)

Query: 162 EEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           E MR+    P ++T   +  L++    AR + +A+E++  M + GC PD+  +  ++  L
Sbjct: 222 ERMRRVGVDPDVVT---YNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFL 278

Query: 220 CKNSSVKEAAKLFDEMR-------------------------------------ERFKPS 242
           CK   V E   L + MR                                     +RF+  
Sbjct: 279 CKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVD 338

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              ++++++ +C  G++ EAK ++ +M   G  PD+V Y+ ++ G+ ++G++  A +++K
Sbjct: 339 QVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMK 398

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            M + GC PN  ++T L+  LC++ K  EA     + E        +TY+ ++ GF +  
Sbjct: 399 HMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREG 458

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K+    +++  M+Q+G  P  +    ++ A  K+++     + M + +  GC  +V N+ 
Sbjct: 459 KLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFT 518

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            VI    + G+L+ A+++ ++M   +  P   ++ V+V     +G + EA    ++M+ R
Sbjct: 519 TVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNR 578

Query: 483 GLLSAP-----------QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           GLL  P           + G ++ LLN L +    +     ++ ++ K C
Sbjct: 579 GLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLTKQGFSSAYNQVIEKLC 628



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 180/417 (43%), Gaps = 75/417 (17%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK---PQLITTEVFV------------------- 178
           Y  ++  L K ++   VW L+E MR +    P  IT  + +                   
Sbjct: 271 YFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRES 330

Query: 179 -------------ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
                         ++  F     + +A E++ EM   GC PD   +  ++D  C+   +
Sbjct: 331 EGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGEL 390

Query: 226 KEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            +A K+   M +   KP+    T+LL G CK GK  EA  +L + ++  + P  + Y+ +
Sbjct: 391 DQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVI 450

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G+ + GK+ ++ +++ +M +KG  P A    +LI ALC+ +K   A     + +  GC
Sbjct: 451 MHGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGC 510

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSM------------------------------ 374
             +VV +TT+I GF +   ++    +LD M                              
Sbjct: 511 FINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATA 570

Query: 375 -----IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM-RKIGCVPDVSNYNVVIRLA 428
                + RG+LP  +TY  ++  + +K  +E+ + L+ +M  K G     S YN VI   
Sbjct: 571 LVEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLTKQGFS---SAYNQVIEKL 627

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           C  G+L EA N+ +++  ++      +  +++  FL +G  +++      M  R L+
Sbjct: 628 CAFGKLSEAYNLLSKVLRSASKRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLI 684


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 199/406 (49%), Gaps = 6/406 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L+ +++KM KF  V +L E+M+    P       + IL+  F     +  A+ VL +
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGMPH--NHYTYSILINCFCRRSQLPLALAVLGK 141

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M K G EP+      LL+  C +  + EA  L D+M    ++P+   F +L++G     K
Sbjct: 142 MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 201

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             EA  ++ +M   G +PD+V Y  +++G  + G    AF LL +M +   +P    YT 
Sbjct: 202 ASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTT 261

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I  LC+ + M++A   F EME  G   +VVTY++LIS  C   +      +L  MI+R 
Sbjct: 262 IIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P+  T+  ++ A  K+ +L E  +L  EM K    P +  Y+ +I   C    L EA 
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++  M +    P   S+  ++ GF     + E  E F+EM  RGL+      T   L+ 
Sbjct: 382 QMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV--TYTTLIQ 439

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            L +A   +MA++++  +V+ G   N+  +   +  L  NG +++A
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 220/463 (47%), Gaps = 10/463 (2%)

Query: 137 SYDVYRALIKS-LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           SYD    L ++ LS+++   AV AL  EM K +P     E F  L+   A        I 
Sbjct: 45  SYDYREKLSRNGLSELKLDDAV-ALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVIS 102

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWC 254
           + ++M   G   + + +  L++  C+ S +  A A L   M+  ++P++   +SLL G+C
Sbjct: 103 LGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYC 162

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
              ++ EA  ++ QM   G++P+ V +N L+ G     K ++A  L+  M  KGC P+  
Sbjct: 163 HSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLV 222

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y V++  LC+    + A     +ME+   E  V+ YTT+I G CK++ +D    +   M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM 282

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKIGCVPDVSNYNVVIRLACKLG 432
             +GI PN +TY  ++          +   L+ +M  RKI   PDV  ++ +I    K G
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN--PDVFTFSALIDAFVKEG 340

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +L EA  +++EM   S+ P   ++  +++GF     L EA + F+ MV +     P   +
Sbjct: 341 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF--PDVVS 398

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              L+    +A++V+   +++  +  +G   N   +T  I  LF  G    A     +M+
Sbjct: 399 YSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMV 458

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
              V P   T+  L+ GL K    + A  + E +++   E  I
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 194/392 (49%), Gaps = 16/392 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     Y  ++  L K       + L+ +M + K  P ++   ++  ++      +
Sbjct: 218 QPDLV----TYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVL---IYTTIIDGLCKNK 270

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +  A+ +  EM   G  P+   +  L+  LC      +A++L  +M ER   P +  F+
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+  + KEGKLVEA+ +  +M     +P IV Y++L++G+    ++ +A ++ + M  K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            C P+  SY+ LI+  C+ ++++E    F EM + G   + VTYTTLI G  ++   D  
Sbjct: 391 HCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMA 450

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            EI   M+  G+ PN +TY  ++    K  +LE+ + +   +++    P +  YN++I  
Sbjct: 451 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 510

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G++++  +++  +    + P   ++  M+ GF  +G   EA   FKEM   G L  
Sbjct: 511 MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL-- 568

Query: 488 PQYGTLKALLNSLL----RAQKVEMAKDVWSC 515
           P  G    L+ + L    R    E+ K++ SC
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSC 600



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I  L K +       L +EM  +  +P ++T    +  +  +        A  +L
Sbjct: 258 IYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW---SDASRLL 314

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M +    PD F F  L+DA  K   + EA KL+DEM +R   PS+  ++SL+ G+C  
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-------- 308
            +L EAK +   M      PD+V Y+ L+ G+ +  ++ +  EL +EM ++G        
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTY 434

Query: 309 ------------CD---------------PNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                       CD               PN  +Y  L+  LC+  K+E+A   F  ++R
Sbjct: 435 TTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           S  E  + TY  +I G CK+ K++  +++  ++  +G+ P+ + Y  ++    +K   EE
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 554

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L  EM++ G +P+   YN +IR   + G+ + +  +  EM +   + G  S + +V 
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA-GDASTIGLVT 613

Query: 462 GFLGQG 467
             L  G
Sbjct: 614 NMLHDG 619


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 210/419 (50%), Gaps = 8/419 (1%)

Query: 130 KQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFAS 186
           K P++    D+  Y A++K L   +++  V  LM EM R   P  + T  F  L+     
Sbjct: 203 KLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVAT--FNTLIAYLCR 260

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
             + ++  E L +MP++GC PD  ++  ++D +CK+   + A  +   M     KP++  
Sbjct: 261 NGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVC 320

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + ++L G C   +  EA+ +L +M       D V +N L+  + Q G +    ELL++M 
Sbjct: 321 YNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 380

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC P+  +YT +I   C+   ++EA      M   GC+ + ++YT ++ G C++ +  
Sbjct: 381 EHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWV 440

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              E++  MIQ+G LPN +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI
Sbjct: 441 DAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 500

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               K G+ +EA+ + N M    ++P T  +  M      +G   +  + F  +    + 
Sbjct: 501 DGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVR 560

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           S        A+++SL +  + + A D ++ +V+ GC  N   +TI I  L S G V+EA
Sbjct: 561 S--DAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREA 617



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 188/429 (43%), Gaps = 38/429 (8%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++R   +  ++  A+ VLDEMP  GC     +   +L+A C+    + A +    +  + 
Sbjct: 114 IVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKG 173

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
                 +   ++   C++G + E   +L ++   G EPDIV YN +L G     +  D  
Sbjct: 174 CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVE 233

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL+ EM R GC PN  ++  LI  LCR    E+ + A  +M   GC  D+  Y T+I G 
Sbjct: 234 ELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGI 293

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEE-------------- 401
           CK    +   +IL  M   G+ PN + Y   L  + + E+ EE E+              
Sbjct: 294 CKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDD 353

Query: 402 ------------------CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
                              +EL+ +M + GC+PDV  Y  VI   CK G + EAV +   
Sbjct: 354 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKN 413

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M A    P T S+ +++ G       ++A E    M+ +G L  P   T   L+N + + 
Sbjct: 414 MSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPV--TFNTLINFMCKK 471

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
             VE A ++   ++  GC  ++ +++  I  L   G  +EA      M++  + P    +
Sbjct: 472 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 531

Query: 564 AKLMRGLKK 572
           + +   L +
Sbjct: 532 SSMASALSR 540



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 169/336 (50%), Gaps = 15/336 (4%)

Query: 148 LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
           LS+M  +G            KP ++    +  +++   SA   ++A ++L EM +  C  
Sbjct: 306 LSRMPSYGL-----------KPNVVC---YNTVLKGLCSAERWEEAEDLLAEMFQEDCPL 351

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D+  F  L+D  C+N  V    +L ++M E    P +  +T+++ G+CKEG + EA  +L
Sbjct: 352 DDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLL 411

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
             M   G +P+ + Y  +L G  +  +  DA EL+  M ++GC PN  ++  LI  +C+ 
Sbjct: 412 KNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKK 471

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
             +E+A     +M  +GC  D+++Y+T+I G  K+ K +   E+L+ MI +GI PN + Y
Sbjct: 472 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 531

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             +  A  ++   ++ +++   ++      D + YN VI   CK  E   A++ +  M +
Sbjct: 532 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 591

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
               P   ++ +++ G   +G + EA +   E+  R
Sbjct: 592 NGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 627



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 157/319 (49%), Gaps = 4/319 (1%)

Query: 129 SKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           S+ P+Y    +V  Y  ++K L    ++     L+ EM +E   L     F IL+  F  
Sbjct: 307 SRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDV-TFNILVDFFCQ 365

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
             +V + IE+L++M ++GC PD   +  +++  CK   V EA  L   M     KP+   
Sbjct: 366 NGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTIS 425

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T +L G C+  + V+A+ ++  M   G  P+ V +N L++   + G +  A ELLK+M 
Sbjct: 426 YTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQML 485

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC P+  SY+ +I  L +  K EEA      M   G   + + Y+++ S   +  + D
Sbjct: 486 VNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTD 545

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +  ++ DS+    +  +   Y  ++ +  K+ E +  ++    M   GC+P+ S Y ++I
Sbjct: 546 KIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILI 605

Query: 426 RLACKLGELKEAVNVWNEM 444
           R     G ++EA ++ +E+
Sbjct: 606 RGLASEGLVREAQDLLSEL 624



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 155/362 (42%), Gaps = 7/362 (1%)

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P+   +  ++   C  G + +A  VL +M   G      + + +L    + G    A  
Sbjct: 105 PPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVR 164

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
            L+ +  KGC  ++ +  +++ A+C    ++E      ++   GCE D+V+Y  ++ G C
Sbjct: 165 ALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
            +++ D   E++  M++ G  PN  T+  ++    +    E+  E + +M + GC PD+ 
Sbjct: 225 MAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLR 284

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            Y  +I   CK G  + A ++ + M +  L P    +  ++ G        EA +   EM
Sbjct: 285 MYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEM 344

Query: 480 VGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
                   P    T   L++   +   V+   ++   ++  GC  +V  +T  I+     
Sbjct: 345 FQE---DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKE 401

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE--ITEKVRKMAAERQIT 596
           G V EA     +M      P   ++  +++GL +   R + A+  I+  +++      +T
Sbjct: 402 GLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR-AERWVDAQELISHMIQQGCLPNPVT 460

Query: 597 FK 598
           F 
Sbjct: 461 FN 462


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 184/366 (50%), Gaps = 4/366 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  L K  +    + L E+M  +        V+  L+R F      +   +V  E+
Sbjct: 327 YCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKEL 385

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + GC+PD  +    +D + K   V++   +F+++R   F P +R ++ L++G  K G+ 
Sbjct: 386 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA 445

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            E   +   MK  GF  D   YN ++ G+ + GK+  A+E+L+EM+ K   P   +Y  +
Sbjct: 446 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI 505

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  L ++++++EA   F E +  G E +VV Y++LI GF K  +ID  Y IL+ M+++G+
Sbjct: 506 VDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 565

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  T+  ++ A  K EE+ E +     M+++ C P+   Y+++I   C++ +  +A  
Sbjct: 566 TPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV 625

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            W +M+   L P   ++  M+ G    G + +A   F+     G    P   +  AL+  
Sbjct: 626 FWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG--GIPDAASFNALIEG 683

Query: 500 LLRAQK 505
           +  A +
Sbjct: 684 MSNANR 689



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 216/454 (47%), Gaps = 7/454 (1%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           ++  Y  LI +L++ R+      L+ +M +E    +   +F  L+R  A    V  A+ +
Sbjct: 44  AFSAYTVLIGALAEARRPERALELLRQM-QEVGYEVGVHLFTTLVRALAREGQVADALAL 102

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           +DE+     EPD  ++   +D   K  +V  A K F E++ +  KP    +TS+++  CK
Sbjct: 103 VDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCK 162

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G+L EA+ +  QM+     P    YN ++ GY   G+  DA++LL+ +R +GC P+  S
Sbjct: 163 AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS 222

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           +  ++  L +  K++EA   F E+ +   E +  TY  +I   C   +++  Y ILD M 
Sbjct: 223 FNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME 281

Query: 376 QRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              + PN LT ++IM+    K  +LEE  ++     + GC PD   Y  +I    K G++
Sbjct: 282 HASLFPNLLT-VNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 340

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  ++ +M  A  +     +  ++  F   G   +  + FKE++ RG    P    L 
Sbjct: 341 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRG--CKPDLTLLN 398

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
             ++ + +A +VE  + ++  I + G   +V +++I IH L   G  +E  +    M   
Sbjct: 399 TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQ 458

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
                   +  ++ G  K      A EI E++++
Sbjct: 459 GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 492



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 212/448 (47%), Gaps = 5/448 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +++  L K RK     +L E M+K+      +  + I++        V++A  +LDEM
Sbjct: 223 FNSILTCLGKKRKVDEALSLFEVMKKDAEP--NSSTYNIIIDMLCLGGRVEEAYRILDEM 280

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
                 P+      ++D LCK   ++EA K+F+   +R   P    + SL+ G  K+G++
Sbjct: 281 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV 340

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M DAG   + VVY +L+  +   G+  D  ++ KE+ R+GC P+       
Sbjct: 341 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTY 400

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  + +  ++E+    F ++   G   DV +Y+ LI G  K+ +      I  +M Q+G 
Sbjct: 401 MDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGF 460

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             +   Y  ++    K  ++ +  E++ EM++    P V+ Y  ++    K+  L EA  
Sbjct: 461 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 520

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ E ++  +      +  ++ GF   G + EA    +EM+ +GL   P   T  +LL++
Sbjct: 521 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL--TPNVYTWNSLLDA 578

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L++A+++  A   +  +    C  N Y ++I I+ L       +A  +  DM    ++P 
Sbjct: 579 LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 638

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             T+  ++ GL K+ N   A  + E+ +
Sbjct: 639 VVTYTTMISGLAKVGNITDAYSLFERFK 666



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 200/440 (45%), Gaps = 9/440 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I       +F   + L+E +R E+  + +   F  ++      R V +A+ + + M
Sbjct: 188 YNTMIMGYGSAGRFEDAYKLLERLR-ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM 246

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            K   EP+   +  ++D LC    V+EA ++ DEM      P+L     ++   CK  KL
Sbjct: 247 KK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKL 305

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +       G  PD V Y +L+ G  + G++ +A+ L ++M   G + N   YT L
Sbjct: 306 EEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSL 365

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+      + E+ ++ F E+ R GC+ D+    T +    K+ ++++   I + +   G 
Sbjct: 366 IRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF 425

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           LP+  +Y  ++    K  +  E   +   M++ G   D   YN V+   CK G++ +A  
Sbjct: 426 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 485

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
           +  EM+   + P   ++  +V G      L EA   F+E   +G+ L+   Y +   L++
Sbjct: 486 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSS---LID 542

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +  +++ A  +   ++ KG   NVY W   + +L     + EA      M +    P
Sbjct: 543 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 602

Query: 559 QPDTFAKLMRGLKKL--YNR 576
              T++ L+ GL ++  YN+
Sbjct: 603 NTYTYSILINGLCRVQKYNK 622



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 180/354 (50%), Gaps = 4/354 (1%)

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
           AR +  A+  +  M +    P    +  L+ AL +    + A +L  +M+E  ++  +  
Sbjct: 23  ARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHL 82

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           FT+L+    +EG++ +A  ++ ++K +  EPDIV+YN  +  + + G +  A +   E++
Sbjct: 83  FTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELK 142

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  P+  SYT +I  LC+  ++ EA   F +ME          Y T+I G+  + + +
Sbjct: 143 AQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFE 202

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             Y++L+ + +RG +P+ +++  I+    KK +++E + L   M+K    P+ S YN++I
Sbjct: 203 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIII 261

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            + C  G ++EA  + +EME ASL P   +  +MV        L EA + F+    RG  
Sbjct: 262 DMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG-- 319

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
             P   T  +L++ L +  +V+ A  ++  ++  G   N   +T  I + F +G
Sbjct: 320 CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG 373



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y A++  L+K+ +    + L EE + +  +L    ++  L+  F     + +A  +L+EM
Sbjct: 502 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIEL-NVVLYSSLIDGFGKVGRIDEAYLILEEM 560

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            K G  P+ + +  LLDAL K   + EA   F  M+E +  P+   ++ L+ G C+  K 
Sbjct: 561 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 620

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A      M+  G  P++V Y  ++SG A++G +TDA+ L +  +  G  P+A S+  L
Sbjct: 621 NKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNAL 680

Query: 320 IQALCRMEKMEEANRAFV-EMERSGC 344
           I+ +    +  EA +  V ++  S C
Sbjct: 681 IEGMSNANRAMEAYQTTVYQLSSSSC 706



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 3/277 (1%)

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L +   +  ++ DA   +  MRR    P  ++YTVLI AL    + E A     +M+  
Sbjct: 15  DLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEV 74

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G E  V  +TTL+    +  ++     ++D +    + P+ + Y   +    K   ++  
Sbjct: 75  GYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMA 134

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +   E++  G  PD  +Y  +I + CK G L EA  ++ +MEA    P   ++  M+ G
Sbjct: 135 CKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 194

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           +   G   +A +  + +  RG +  P   +  ++L  L + +KV+ A  ++  ++ K  E
Sbjct: 195 YGSAGRFEDAYKLLERLRERGCI--PSVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAE 251

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            N   + I I  L   G V+EA     +M  A + P 
Sbjct: 252 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 288



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 2/243 (0%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A KQ  +      Y A++    K  K    + ++EEM KEK    T   +  ++   A  
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM-KEKCVQPTVATYGAIVDGLAKI 512

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
             + +A  + +E    G E +  ++  L+D   K   + EA  + +EM ++   P++  +
Sbjct: 513 DRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 572

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            SLL    K  ++ EA      MK+    P+   Y+ L++G  ++ K   AF   ++M++
Sbjct: 573 NSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 632

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +G  PN  +YT +I  L ++  + +A   F   + +G   D  ++  LI G   + +   
Sbjct: 633 QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAME 692

Query: 367 CYE 369
            Y+
Sbjct: 693 AYQ 695


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 227/506 (44%), Gaps = 18/506 (3%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKK 192
           VH    Y  LI    +  +     AL+ +M K   +P ++T      L+  +   + +  
Sbjct: 117 VHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS---LLNGYCHGKRISD 173

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLY 251
           A+ ++D+M + G  PD   F  L+  L  ++   EA  L D M +R  +P+L  +  ++ 
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G    A  +L +M+ A  E D+V++N ++    +   + DA  L KEM  KG  P
Sbjct: 234 GLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP 293

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  +Y+ LI  LC   +  +A++   +M       ++VT+  LI  F K  K     ++ 
Sbjct: 294 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLY 353

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D MI+R I P+  TY  ++      + L++  ++   M    C PDV  YN +I+  CK 
Sbjct: 354 DDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS 413

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             +++   ++ EM    L   T ++  ++ G    G    A + FK+MV  G+   P   
Sbjct: 414 KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV--PPDIM 471

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   LL+ L    K+E A +V+  +     +L++Y +T  I  +   G V +       +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI----TFKMYKRRGERD 607
               V P   T+  ++ G   L ++++  E    ++KM  +  +    T+    R   RD
Sbjct: 532 SLKGVKPNVVTYNTMISG---LCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRD 588

Query: 608 LKEKAKKQVDGRKRRARQRRWGGGRS 633
             + A  ++    R  R  R+ G  S
Sbjct: 589 GDKAASAEL---IREMRSCRFVGDAS 611



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 180/390 (46%), Gaps = 12/390 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QPN V     Y  ++  L K         L+ +M   K +     +F  ++      R V
Sbjct: 222 QPNLV----TYGVVVNGLCKRGDTDLALNLLNKMEAAKIE-ADVVIFNTIIDSLCKYRHV 276

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  P+   +  L+  LC      +A++L  +M E+   P+L  F +L
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGK VEA+ +   M     +PDI  YN+L++G+    ++  A ++ + M  K C
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y  LI+  C+ +++E+    F EM   G   D VTYTTLI G       D   +
Sbjct: 397 FPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 456

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ P+ +TY  ++       +LE+ +E+   M+K     D+  Y  +I   C
Sbjct: 457 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 516

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++ +  +++  +    + P   ++  M+ G   +  L EA    K+M   G L  P 
Sbjct: 517 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL--PN 574

Query: 490 YGTLKALLNSLLR----AQKVEMAKDVWSC 515
            GT   L+ + LR    A   E+ +++ SC
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREMRSC 604



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 208/449 (46%), Gaps = 4/449 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR ++++     K      L   M K +P     E F  L+   A  +     I + ++M
Sbjct: 53  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVE-FNKLLSAIAKMKKFDVVISLGEKM 111

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            +       + +  L++  C+ S +  A  L  +M +  ++PS+   +SLL G+C   ++
Sbjct: 112 QRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  ++ QM + G+ PD + +  L+ G     K ++A  L+  M ++GC PN  +Y V+
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+    + A     +ME +  EADVV + T+I   CK R +D    +   M  +GI
Sbjct: 232 VNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGI 291

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +TY  ++          +  +L+ +M +    P++  +N +I    K G+  EA  
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++++M   S+ P   ++  +V+GF     L +A + F+ MV +     P   T   L+  
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF--PDVVTYNTLIKG 409

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             ++++VE   +++  +  +G   +   +T  I  LF +G    A      M+   V P 
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             T++ L+ GL      + A E+ + ++K
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQK 498



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     + ALI +  K  KF     L ++M  R   P + T   +  L+  F    
Sbjct: 327 NPNLV----TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT---YNSLVNGFCMHD 379

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA ++ + M    C PD   +  L+   CK+  V++  +LF EM  R        +T
Sbjct: 380 RLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 439

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G   +G    A+ V  QM   G  PDI+ Y+ LL G    GK+  A E+   M++ 
Sbjct: 440 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 499

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
               +   YT +I+ +C+  K+++    F  +   G + +VVTY T+ISG C  R +   
Sbjct: 500 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 559

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           Y +L  M + G LPN  TY  ++ AH +  +     EL+ EMR    V D S   +V
Sbjct: 560 YALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 616



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 85/200 (42%), Gaps = 2/200 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ + L G M K   +P +  +N ++    K+ +    +++  +M+   +  G  ++ 
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++++ F  +  +  A     +M+  G    P   TL +LLN     +++  A  +   +V
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
             G   +   +T  IH LF +    EA +    M+     P   T+  ++ GL K  +  
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 578 IAAEITEKVRKMAAERQITF 597
           +A  +  K+     E  +  
Sbjct: 243 LALNLLNKMEAAKIEADVVI 262


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 200/427 (46%), Gaps = 10/427 (2%)

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           +AL  +M + +  L TT  F I++R   SA    +A+E+L +MP+    P+   +  ++ 
Sbjct: 26  FALFADMFRLRLPLCTT-TFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIA 80

Query: 218 ALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-F 274
             C    V+ A  +  EMRER    P+   + +++ GWCK G++ EA  V  +M   G  
Sbjct: 81  GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 140

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+ V+YN L+ GY   GK+  A      M  +G      +Y +L+ AL    +  EA  
Sbjct: 141 KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYE 200

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              EM   G   DV TY  LI+G CK   + +  EI ++M +RG+    +TY  ++ A  
Sbjct: 201 LVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALS 260

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           KK +++E  +L  E  + G  PD+  YN +I      G +  A  +  EME   ++P   
Sbjct: 261 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDV 320

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ G    G + EA +   EM  RG+   P   T   L++       V+ A  + +
Sbjct: 321 TYNTLMRGLCLLGRVDEARKLIDEMTKRGI--QPDLVTYNTLISGYSMKGDVKDALRIRN 378

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            ++ KG    +  +   I  L  NG   +A +   +M++  + P   T+  L+ GL    
Sbjct: 379 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED 438

Query: 575 NRQIAAE 581
            R I  E
Sbjct: 439 ERAIDDE 445



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 196/398 (49%), Gaps = 10/398 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  +++ L    K      L+ +M   +P  +T   +  ++  F S   V+ A++++ EM
Sbjct: 44  FNIMLRHLCSAGKPARALELLRQM--PRPNAVT---YNTVIAGFCSRGRVQAALDIMREM 98

Query: 201 -PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKEG 257
             + G  P+++ +G ++   CK   V EA K+FDEM  +   KP    + +L+ G+C +G
Sbjct: 99  RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL  A     +M + G    +  YN L+      G+ T+A+EL++EM  KG  P+  +Y 
Sbjct: 159 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 218

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+   +++A   F  M R G  A VVTYT+LI    K  ++    ++ D  ++R
Sbjct: 219 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRR 278

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ + Y  ++ +H     ++   E+MGEM K    PD   YN ++R  C LG + EA
Sbjct: 279 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 338

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + +EM    + P   ++  ++ G+  +G + +A     EM+ +G    P   T  AL+
Sbjct: 339 RKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGF--NPTLLTYNALI 396

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             L +  + + A+++   +V  G   +   +   I  L
Sbjct: 397 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 8/249 (3%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           AF L  +M R        ++ ++++ LC   K   A    +E+ R     + VTY T+I+
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARA----LELLRQMPRPNAVTYNTVIA 80

Query: 357 GFCKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           GFC   ++    +I+  M +RG I PNQ TY  ++    K   ++E V++  EM   G V
Sbjct: 81  GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 140

Query: 416 -PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+   YN +I   C  G+L  A+   + M    ++    ++ ++VH     G   EA E
Sbjct: 141 KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYE 200

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM G+GL  AP   T   L+N   +   V+ A +++  +  +G    V  +T  I++
Sbjct: 201 LVEEMGGKGL--APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 258

Query: 535 LFSNGHVKE 543
           L   G V+E
Sbjct: 259 LSKKGQVQE 267


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 217/472 (45%), Gaps = 29/472 (6%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVIL 180
           R + W  +Q  Y HS   Y   + +L+K       +   ++M++    P   T   + I+
Sbjct: 23  RLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFT---YSIV 79

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +R    A  + KA E+L ++ + G + +   +  ++D  CK S V +A ++F  M     
Sbjct: 80  LRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGG 139

Query: 241 --PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +  F SLL G C   ++ EA  +   M  AG EP+++ Y+ LL G  + G++ +A 
Sbjct: 140 CVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L +EM  K C P+  +YT  +  LC+  ++ EA     +M   G +AD V ++T+I   
Sbjct: 200 RLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGIL 259

Query: 359 CK-----------------SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           CK                 S  +D   +  + MI R   P+   +  ++ A  K + L +
Sbjct: 260 CKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPD 319

Query: 402 CVEL---MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
            V L   M  M++  C P++  YN+++   CK  +L EA  + NEM    LSP   ++  
Sbjct: 320 GVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSA 379

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           +V G    G L  AC+  +EM   G+   P   T  ++LN+L +A KV+ A      +  
Sbjct: 380 LVDGLCKLGKLDRACDLLEEMSKEGVF--PDSFTDASILNALSKAGKVDYALSHLETMKA 437

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +G   ++  +   +  L   G + EA ++   M+ A   P   ++  ++  L
Sbjct: 438 RGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 215/488 (44%), Gaps = 71/488 (14%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   F  L++   S   + +A  + + M K GCEP+   +  LLD LCK   + EA
Sbjct: 142 PDVVT---FNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV-------- 279
            +L++EM E+   P L  +TS + G CK  ++ EA     +M   G + D V        
Sbjct: 199 CRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGI 258

Query: 280 --------------------------------------------VYNNLLSGYAQMGKMT 295
                                                       ++N L+    +  ++ 
Sbjct: 259 LCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLP 318

Query: 296 DA---FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           D    F+ +K M+   C PN  +Y +++  LC+ ++++EA     EM   G   DVVTY+
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            L+ G CK  K+DR  ++L+ M + G+ P+  T   I+ A  K  +++  +  +  M+  
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PD+  YN ++   CK G + EA+    +M AA  +P   S+ +++      G    A
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGA 498

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              F+EMV RG+L  P      +LL+ L R    ++A ++     T  C+ +     + +
Sbjct: 499 HAIFQEMVKRGVL--PDTVLYHSLLDGLARNGLEDLALELLK---TSLCKPDFVMHKMVL 553

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN----RQI---AAEITEK 585
             L   G  ++AC     M DA       T+  ++ GL+KL      RQ+   A+E    
Sbjct: 554 DGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASETHTS 613

Query: 586 VRKMAAER 593
           V +++ E+
Sbjct: 614 VERLSMEK 621



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 183/408 (44%), Gaps = 42/408 (10%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKE--GKLVEAKYVL 266
           V G +L  L K S++    +LFD +  ++ ++ S+  +   L    K   G+L   K+  
Sbjct: 7   VVGEVLRHLGKISTI---VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQ- 62

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            QM+  G+ PD   Y+ +L G  + G++  A ELL ++R  G   N  +Y+V+I   C+ 
Sbjct: 63  -QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKA 121

Query: 327 EKMEEANRAFVEMER-SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
            ++++A   F  M    GC  DVVT+ +L+ G C   ++   + + + M + G  PN ++
Sbjct: 122 SRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++    K   L+E   L  EM +  CVPD+  Y   +   CK   + EA +   +M 
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241

Query: 446 AASLSPGTDSFVV-----------------MVHGFLGQGCLIEACEYFKEMVGRG-LLSA 487
                    +F                   M+      G L EAC+ F+EM+ R    SA
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSA 301

Query: 488 PQYGTL-------KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             + TL       K L + +L  Q+++  K+ +       C  N+  + I + +L     
Sbjct: 302 ELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFY-------CPPNLETYNIMVDNLCKAKQ 354

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           + EA     +M +  + P   T++ L+ GL KL     A ++ E++ K
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSK 402


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 200/418 (47%), Gaps = 10/418 (2%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL++   SA  +K A +  DEM      PD   +G ++   C    ++ A KL DEM  +
Sbjct: 260 ILLKALLSAGRLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAK 316

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             + +   +TS++   C +G++ +A  VL  M   G   D VV+  ++SG+   G +  A
Sbjct: 317 GLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAA 376

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
             L +EM+++G   +  ++T LI  LCR  +++EA+R   EM   G + DVVTYT LI G
Sbjct: 377 RRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDG 436

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK   +   + + + M+ R + PN +TY  +     K+ ++    EL+ EM   G   +
Sbjct: 437 YCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELN 496

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN +I   CK G L++A+ +  EMEAA       ++  ++      G    A    +
Sbjct: 497 VYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQ 556

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ +G+   P   T   L+N    + +VE  K +   ++ K    NV  +   +     
Sbjct: 557 EMLDKGI--KPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCI 614

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA----AEITEKVRKMAA 591
           + ++K        M   +V P  +T+  L++G  K  N + A     E+ EK  ++ A
Sbjct: 615 DKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTA 672



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 202/417 (48%), Gaps = 6/417 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY ++I  L    +      ++E+M      L    VF  ++  F S   +  A  + +E
Sbjct: 324 VYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAV-VFTTVISGFCSKGDLAAARRLFEE 382

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M K G   D      L++ LC+   +KEA ++  EM ++     +  +T L+ G+CK G 
Sbjct: 383 MQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGN 442

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +VEA  V  +M      P++V Y  L  G  + G +  A ELL EM  KG + N  +Y  
Sbjct: 443 MVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNS 502

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC+   +E+A R   EME +G   DV TYTTLI   CKS + DR + +L  M+ +G
Sbjct: 503 LINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKG 562

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P+  TY  +M        +E   +L+  M +    P+V  YN +++  C    +K   
Sbjct: 563 IKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTT 622

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
            ++  M +  ++P  +++ +++ G      + EA  + +EM+ +GL L+A  Y  L  LL
Sbjct: 623 EIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLL 682

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           N   + +K   A+  +  +  +G       ++ ++   F+  +++   + C ++++A
Sbjct: 683 N---KKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVEA 736



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 194/428 (45%), Gaps = 20/428 (4%)

Query: 151 MRKFGAVWA-LMEEMRKEKPQLITTEVFVILMRRFASAR-------MVKKAIEVLDEMPK 202
           +R+ G   A L+  +R   P     E F+   + F+S         +   + E+L  + +
Sbjct: 162 VREPGTARAILVRALRFPSPHRHFVEQFIFTYKAFSSDPASFDLLLLCLPSAELLRRLRQ 221

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           YG  P       +L  L     + EA  LF E+ ++   ++     LL      G+L +A
Sbjct: 222 YGLSPSPESCNAVLSRL----PLDEAIALFRELPDK---NVCSHNILLKALLSAGRLKDA 274

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
                +M      PD+V Y  ++ GY   G++ +A +LL EM  KG + NA  YT +I  
Sbjct: 275 CQHFDEMSSP---PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIAL 331

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC   ++ +A R   +M   G   D V +TT+ISGFC    +     + + M +RG+  +
Sbjct: 332 LCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAAD 391

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           ++T+  ++    +  EL+E   ++ EM   G   DV  Y V+I   CK G + EA  V N
Sbjct: 392 RVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHN 451

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM    ++P   ++  +  G   QG +  A E   EM  +GL       T  +L+N L +
Sbjct: 452 EMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGL--ELNVYTYNSLINGLCK 509

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
              +E A  + + +   G   +VY +T  I +L  +G    A +   +M+D  + P   T
Sbjct: 510 FGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIAT 569

Query: 563 FAKLMRGL 570
           +  LM G 
Sbjct: 570 YNVLMNGF 577



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 139/312 (44%), Gaps = 6/312 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI    K       + +  EM  R+  P ++T   +  L         V+ A E+L
Sbjct: 429 TYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVT---YTALSDGLCKQGDVRAANELL 485

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM   G E + + +  L++ LCK  ++++A ++  EM     +  +  +T+L+   CK 
Sbjct: 486 HEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKS 545

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+   A  +L +M D G +P I  YN L++G+   G++    +LL+ M  K   PN  +Y
Sbjct: 546 GEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTY 605

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L++  C  + M+     +  M       +  TY  LI G CK+R +         MI+
Sbjct: 606 NSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIE 665

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+     +Y  ++    KK++  E      +MR  G   +   Y+  + ++     L+ 
Sbjct: 666 KGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLES 725

Query: 437 AVNVWNEMEAAS 448
            + + +E+  AS
Sbjct: 726 TITLCDELVEAS 737


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 188/394 (47%), Gaps = 6/394 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL++    A  V+ A ++ DEM      PD   +G L+   C    ++ A KL D+M 
Sbjct: 265 YNILLKVLCGAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDMV 321

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R  +P+   +TS++   C +G++ +A  V+  M       D  VY  +LSG+   G + 
Sbjct: 322 ARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLV 381

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A     EM+RKG   +  +YT LI  LCR  +++EA +   EM     + D VTYT L+
Sbjct: 382 SARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLV 441

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G+CK  K+   +++ ++M+QRG+ PN +TY  +     K+ +++   EL+ EM   G  
Sbjct: 442 DGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLE 501

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +   YN +I   CK G L +A+    +M+AA L P   ++  ++      G L  A + 
Sbjct: 502 LNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDL 561

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +EM+  G+   P   T   L+N    + +VE  K +   ++ K    N   +   +   
Sbjct: 562 LQEMLDNGI--KPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQY 619

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
               ++K        M   +V P  +T+  L++G
Sbjct: 620 CIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKG 653



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 205/420 (48%), Gaps = 6/420 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY +++  L    +      ++E+M   K  ++   V+  ++  F +   +  A    DE
Sbjct: 331 VYTSVVALLCDKGRVSDALTVVEDMVHHK-VILDEAVYTTVLSGFCNKGDLVSARRWFDE 389

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + G   D   +  L++ LC+   +KEA K+  EM   R       +T L+ G+CK GK
Sbjct: 390 MQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGK 449

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  V   M   G  P++V Y  L  G  + G +  A ELL EM  KG + NA +Y  
Sbjct: 450 MAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 509

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC+   +++A R   +M+ +G + DV TYTTLI   CKS ++DR +++L  M+  G
Sbjct: 510 LINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNG 569

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P  +TY  +M        +E   +L+  M +    P+ + YN +++  C    +K   
Sbjct: 570 IKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTT 629

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
            ++  M + ++ P  +++ +++ G      + EA  +  EM+ +G  L+A  Y  L  LL
Sbjct: 630 EIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLL 689

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N   + +K   A+ ++  +  +G       +  +I   F+  +++   + C ++++A ++
Sbjct: 690 N---KKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIV 746



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 149/343 (43%), Gaps = 48/343 (13%)

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +L +++  G  P     N +LS       + +A EL + +     D N  SY +L++ LC
Sbjct: 222 LLRRVRQYGISPSPEACNAVLSRL----PLDEAIELFQGLP----DKNVCSYNILLKVLC 273

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
              ++E+A + F EM       DVVTY  LI G+C   +++   ++LD M+ RG+ PN  
Sbjct: 274 GAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNAT 330

Query: 385 TYLHIM------------------LAHEK-----------------KEELEECVELMGEM 409
            Y  ++                  + H K                 K +L        EM
Sbjct: 331 VYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEM 390

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           ++ G   D   Y  +I   C+ GELKEA  V  EM A  L     ++ V+V G+  +G +
Sbjct: 391 QRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKM 450

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA +    MV RG+  AP   T  AL + L +   V+ A ++   +  KG ELN   + 
Sbjct: 451 AEAFQVHNTMVQRGV--APNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYN 508

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             I+ L   G++ +A     DM  A + P   T+  L+  L K
Sbjct: 509 SLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCK 551



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 41/285 (14%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y AL   L K     A   L+ EM  +  +L     +  L+     A  + 
Sbjct: 467 PNVV----TYTALSDGLCKQGDVQAANELLHEMSNKGLEL-NACTYNSLINGLCKAGYLD 521

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+  + +M   G +PD + +  L+DALCK+  +  A  L  EM +   KP++  +  L+
Sbjct: 522 QAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLM 581

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  G++   K +L  M +    P+   YN+L+  Y     M    E+ K M  +  +
Sbjct: 582 NGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVE 641

Query: 311 PNAN-----------------------------------SYTVLIQALCRMEKMEEANRA 335
           PN N                                   SY+ LI+ L + +K  EA + 
Sbjct: 642 PNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKL 701

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
           F +M + G  A+   Y   I        ++    + D +++  I+
Sbjct: 702 FHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIV 746


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 195/398 (48%), Gaps = 3/398 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
            T  + I+         V +A ++L +M   GC PD   +  +++  C+   ++   KL 
Sbjct: 252 NTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLI 311

Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           +EM+ +  KP+   +  ++   CK GK+ EA+ VL +M   G  PD V+Y  L+ G+ ++
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL 371

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G ++ A+ L  EM+++   P+  +YT +I  LC+  ++ EA++ F EM     E D VTY
Sbjct: 372 GNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 431

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           T LI G+CK  K+   + + + M+Q G+ PN +TY  +     K  E++   EL+ EM +
Sbjct: 432 TALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 491

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   ++  YN ++   CK G + +AV +  +ME A   P   ++  ++  +     ++ 
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A E  ++M+ R L   P   T   L+N    +  +E  + +   ++ KG   N   +   
Sbjct: 552 AHELLRQMLDREL--QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 609

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           I       +++        M    V+P  +T+  L++G
Sbjct: 610 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKG 647



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 203/412 (49%), Gaps = 10/412 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K  K      ++ EM  E   P  +   ++  L+  F     V  A  + D
Sbjct: 326 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGV---IYTTLIDGFCKLGNVSSAYRLFD 382

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM K    PD   +  ++  LC+   V EA KLF EM  +R +P    +T+L+ G+CKEG
Sbjct: 383 EMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEG 442

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  +  QM   G  P+IV Y  L  G  + G++  A ELL EM RKG + N  +Y 
Sbjct: 443 KMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYN 502

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC+   +++A +   +ME +G   D VTYTTL+  +CKSR++ R +E+L  M+ R
Sbjct: 503 SLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDR 562

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + P  +T+  +M        LE+  +L+  M + G +P+ + YN +I+  C    ++  
Sbjct: 563 ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 622

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKAL 496
             ++  M A  + P  +++ +++ G      + EA    ++MVG+G  L+   Y    AL
Sbjct: 623 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN---AL 679

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
           +    + +K   A++++  +  +G   +   + I+    +  G ++     C
Sbjct: 680 IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELC 731



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 189/397 (47%), Gaps = 4/397 (1%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN-SSVKEAAKLFDE 234
           VF I  +    A M+ +A ++ D+M  YG           +  L ++   +K A K+F E
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVE 243

Query: 235 MRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
             E     +   +  + +  C+ G++VEA  +L+QM+  G  PD++ Y+ +++GY Q+G+
Sbjct: 244 FPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGE 303

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +    +L++EM+ KG  PN  +Y  +I  LC+  K+ EA R   EM   G   D V YTT
Sbjct: 304 LQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTT 363

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI GFCK   +   Y + D M +R I P+ +TY  ++    +   + E  +L  EM    
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD   Y  +I   CK G++KEA ++ N+M    L+P   ++  +  G    G +  A 
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E   EM  +GL       T  +L+N L +A  ++ A  +   +   G   +   +T  + 
Sbjct: 484 ELLHEMCRKGL--ELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 541

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +   +  +  A      M+D ++ P   TF  LM G 
Sbjct: 542 AYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 149/310 (48%), Gaps = 14/310 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  K    ++L  +M +    P ++T   +  L         V  A E+L 
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT---YTALADGLCKCGEVDTANELLH 487

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM + G E + + +  L++ LCK  ++ +A KL  +M    F P    +T+L+  +CK  
Sbjct: 488 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 547

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++V A  +L QM D   +P +V +N L++G+   G + D  +LLK M  KG  PNA +Y 
Sbjct: 548 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 607

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVV----TYTTLISGFCKSRKIDRCYEILDS 373
            LI+  C    M    RA  E+ R  C   VV    TY  LI G CK+R +   + +   
Sbjct: 608 SLIKQYCIRNNM----RATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRD 663

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+ +G      +Y  ++    K+++  E  EL  +MR+ G V D   YN+   +    G+
Sbjct: 664 MVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGK 723

Query: 434 LKEAVNVWNE 443
           ++  + + +E
Sbjct: 724 MELTLELCDE 733



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 164/358 (45%), Gaps = 34/358 (9%)

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ-MGKMTDAFELLK 302
           R F        + G L EA+ +  +M + G    +   N  +S  ++ +  +  A ++  
Sbjct: 183 RVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFV 242

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           E    G   N  SY ++  +LC++ ++ EA++  ++ME  GC  DV++Y+T+I+G+C+  
Sbjct: 243 EFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVG 302

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           ++ R  ++++ M  +G+ PN  TY  ++L   K  ++ E   ++ EM   G  PD   Y 
Sbjct: 303 ELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYT 362

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I   CKLG +  A  +++EM+   +SP   ++  ++ G    G ++EA + F EMV +
Sbjct: 363 TLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCK 422

Query: 483 GLLS---------------------------------APQYGTLKALLNSLLRAQKVEMA 509
            L                                    P   T  AL + L +  +V+ A
Sbjct: 423 RLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTA 482

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            ++   +  KG ELN+Y +   ++ L   G++ +A     DM  A   P   T+  LM
Sbjct: 483 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 540



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y AL   L K  +      L+ EM ++  +L     +  L+     A  + 
Sbjct: 461 PNIV----TYTALADGLCKCGEVDTANELLHEMCRKGLEL-NIYTYNSLVNGLCKAGNID 515

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A++++ +M   G  PD   +  L+DA CK+  +  A +L  +M +R  +P++  F  L+
Sbjct: 516 QAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 575

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  G L + + +L  M + G  P+   YN+L+  Y     M    E+ + M  KG  
Sbjct: 576 NGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVV 635

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+ N+Y +LI+  C+   M+EA     +M   G    V +Y  LI GF K +K     E+
Sbjct: 636 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEAREL 695

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            + M + G++ ++  Y      +  + ++E  +EL  E  +   V D+   N
Sbjct: 696 FEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKN 747


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 203/409 (49%), Gaps = 12/409 (2%)

Query: 160 LMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           L++EM     KP +    ++ I +R       +++A ++ + M  +G  P+ + +  ++D
Sbjct: 255 LLDEMTSLGVKPNVY---IYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMID 311

Query: 218 ALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
             CK  ++++A  L+ E +     P++  F +L+ G+CK  +LV A+ + V M   G +P
Sbjct: 312 GYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDP 371

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           ++ VYN L+ G  + G M +A  LL EM      P+  +YT+LI  LC  E++ EANR F
Sbjct: 372 NLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLF 431

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             M+        VTY +LI GFCK   I++  ++   M   G+ PN +T+  ++  + K 
Sbjct: 432 QRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKV 491

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             ++  + L  EM   G VPDV  Y  +I    K   +KEA+ ++++M  A + P   +F
Sbjct: 492 RNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 551

Query: 457 VVMVHGFLGQGCLIEACEYFKE----MVGRGLL--SAPQYGTLKALLNSLLRAQKVEMAK 510
             +V GF  +G L +A +++ E      G+ ++  S  +Y     L+  L +   +  A 
Sbjct: 552 ACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRAS 611

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +S + + G   +++++   + +      + +      DM+   ++P 
Sbjct: 612 RFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPN 660



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 207/446 (46%), Gaps = 17/446 (3%)

Query: 136 HSYDVYRALIKSL-SKMRKFGA-------VWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           H Y + R LIKSL  ++R++         ++  +E+++  K    +  VF +L+  F   
Sbjct: 123 HKYTLARCLIKSLIERLRRYSEPTNISHRLFNALEDIQSPK---FSIGVFSLLIMEFLEM 179

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
            + + A+ V  EM    C PD      +L+ L +          +  M  R      H  
Sbjct: 180 GLFEDALWVSREMR---CSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIY 236

Query: 248 SLLYGWC-KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           S+L+  C K+G   + + +L +M   G +P++ +Y   +    +  KM +A ++ + M+ 
Sbjct: 237 SVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKI 296

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  PN  +Y+ +I   C+   + +A   + E+  +    +VV + TL+ GFCK+R++  
Sbjct: 297 HGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVA 356

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +   M++ G+ PN   Y  ++    K   + E + L+ EM  +   PDV  Y ++I 
Sbjct: 357 ARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILIN 416

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C    L EA  ++  M+   + P + ++  ++HGF  +  + +A +   EM   G+  
Sbjct: 417 GLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGV-- 474

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   T   L++   + + ++ A  ++  +  KG   +V  +T  I + F   ++KEA  
Sbjct: 475 EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALR 534

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKK 572
              DM++A + P   TFA L+ G  K
Sbjct: 535 LYSDMLEAGIHPNDHTFACLVDGFWK 560



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 16/254 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L    +      L + M+ E+  P  +T   +  L+  F     ++KA+++  
Sbjct: 411 YTILINGLCTEERLAEANRLFQRMKNERIFPSSVT---YNSLIHGFCKEYNIEKALDLCS 467

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G EP+   F  L+D  CK  ++K A  L+ EM  +   P +  +T+L+    KE 
Sbjct: 468 EMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEA 527

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL---------KEMRRKG 308
            + EA  +   M +AG  P+   +  L+ G+ + G+++DA +           K + ++ 
Sbjct: 528 NMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRS 587

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C      +T LI+ LC+   +  A+R F +M+  G   D+ +Y +++    + ++I    
Sbjct: 588 CWKYV-GFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTM 646

Query: 369 EILDSMIQRGILPN 382
            +   MI+ GILPN
Sbjct: 647 MLHCDMIKTGILPN 660


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 226/473 (47%), Gaps = 24/473 (5%)

Query: 79  RILKKFHSRLPKLELALQHSGVVLRPGLTERVINR-CGDAGNLGYRYYMWASKQPNYVHS 137
           R+L+  H R           G  L  G    V+N  C   G++     +      ++   
Sbjct: 174 RVLQDLHGR-----------GCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCD 222

Query: 138 YDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKA 193
            DV  Y A++K L   +++G V  LMEEM +    P ++T   F  L+       + ++ 
Sbjct: 223 PDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT---FNTLIGYLCRNGLFERV 279

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
            +VL +M  +GC PD  ++  +LD +CK   ++ A ++ D M     KP++  + ++L G
Sbjct: 280 HQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKG 339

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            C   +  +A+ +L +M D     D V +N L+  + Q G +    ELL++M   GC P+
Sbjct: 340 LCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPD 399

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT +I   C+   ++EA      M   GC  + ++YT ++ G C + +     +++ 
Sbjct: 400 VITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMS 459

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI++G  PN +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G
Sbjct: 460 QMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAG 519

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYG 491
           +  EA+ + N M    +SP T  +  +      +G +    + F  +    + S A  Y 
Sbjct: 520 KTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLY- 578

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              A+++SL +    + A +  + +V+ GC  N   +TI I  L S G VKEA
Sbjct: 579 --NAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEA 629



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 178/377 (47%), Gaps = 3/377 (0%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           ++++EM + GC P+   F  L+  LC+N   +   ++  +M +    P +R + ++L G 
Sbjct: 246 DLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGV 305

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CKEG L  A  +L +M   G +P++V YN +L G     +   A ELL EM    C  + 
Sbjct: 306 CKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDD 365

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++ +L+   C+   +        +M   GC  DV+TYTT+I+GFCK   ID    +L S
Sbjct: 366 VTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKS 425

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  PN ++Y  ++      E   +  +LM +M + GC P+   +N VI   CK G 
Sbjct: 426 MAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGL 485

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +++A+ +  +M     SP   S+  ++ G    G   EA E    MV +G+  +P     
Sbjct: 486 VEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGM--SPNTIIY 543

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++ ++L +  ++     ++  I       +   +   I SL   G    A  +   M+ 
Sbjct: 544 SSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVS 603

Query: 554 ADVMPQPDTFAKLMRGL 570
           +  MP   T+  L+RGL
Sbjct: 604 SGCMPNESTYTILIRGL 620



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 160/319 (50%), Gaps = 4/319 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++    +  +++   SA   ++A E+L EM    C  D+  F  L+D  C+N  V  
Sbjct: 327 KPNVVC---YNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYR 383

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
             +L ++M E    P +  +T+++ G+CKEG + EA  +L  M   G  P+ + Y  +L 
Sbjct: 384 VIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLK 443

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G     +  DA +L+ +M  +GC PN  ++  +I  LC+   +E+A     +M  +GC  
Sbjct: 444 GLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSP 503

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+++Y+T+I G  K+ K D   E+L+ M+ +G+ PN + Y  I  A  K+  +   +++ 
Sbjct: 504 DLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMF 563

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             ++ +    D   YN VI   CK G    A+     M ++   P   ++ +++ G   +
Sbjct: 564 DNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASE 623

Query: 467 GCLIEACEYFKEMVGRGLL 485
           G + EA E   E+  +G L
Sbjct: 624 GFVKEAQEMLTELCSKGAL 642



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 193/434 (44%), Gaps = 43/434 (9%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV---KEAAKLFDEMR 236
           ++R   +   +  A+ VLDEM + GC P   ++  +L+A C        + A ++  ++ 
Sbjct: 121 VVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLH 180

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLV-EAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGK 293
            R     + +   +L   C +G  V EA  +L  +  + G +PD+V YN +L G     +
Sbjct: 181 GRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKR 240

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
                +L++EM R GC PN  ++  LI  LCR    E  ++   +M   GC  D+  Y T
Sbjct: 241 WGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYAT 300

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEE--------- 401
           ++ G CK   ++  +EILD M   G+ PN + Y   L  + + E+ E+ EE         
Sbjct: 301 VLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDND 360

Query: 402 -----------------------CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
                                   +EL+ +M + GCVPDV  Y  VI   CK G + EAV
Sbjct: 361 CPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAV 420

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   M A    P T S+ +++ G       ++A +   +M+ +G   +P   T   ++N
Sbjct: 421 MLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG--CSPNPVTFNTVIN 478

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +   VE A ++   ++  GC  ++ +++  I  L   G   EA      M++  + P
Sbjct: 479 FLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 538

Query: 559 QPDTFAKLMRGLKK 572
               ++ +   L K
Sbjct: 539 NTIIYSSIASALSK 552



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 153/315 (48%), Gaps = 6/315 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y  ++K L    ++     L+ EM      L     F IL+  F    +V
Sbjct: 327 KPNVV----CYNTVLKGLCSAERWEQAEELLAEMFDNDCPL-DDVTFNILVDFFCQNGLV 381

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSL 249
            + IE+L++M ++GC PD   +  +++  CK   + EA  L   M     +P+   +T +
Sbjct: 382 YRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIV 441

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L G C   + V+A+ ++ QM + G  P+ V +N +++   + G +  A ELLK+M   GC
Sbjct: 442 LKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGC 501

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  SY+ +I  L +  K +EA      M   G   + + Y+++ S   K  +I+R  +
Sbjct: 502 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQ 561

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D++    I  + + Y  ++ +  K+   +  +E +  M   GC+P+ S Y ++IR   
Sbjct: 562 MFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLA 621

Query: 430 KLGELKEAVNVWNEM 444
             G +KEA  +  E+
Sbjct: 622 SEGFVKEAQEMLTEL 636



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 10/332 (3%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+C+ G+L  A+ +   +      P+   Y  ++      G++ DA  +L EMR
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVP---VPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 306 RKGCDPNANSYTVLIQALCR---MEKMEEANRAFVEMERSGCEADVVTYTTLISGFC-KS 361
           R+GC P    Y V+++A C          A R   ++   GC  DV     +++  C + 
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 362 RKIDRCYEIL-DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             +D    +L D     G  P+ ++Y  ++      +      +LM EM ++GC P+V  
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           +N +I   C+ G  +    V  +M     +P    +  ++ G   +G L  A E    M 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             GL   P       +L  L  A++ E A+++ + +    C L+   + I +     NG 
Sbjct: 323 SYGL--KPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGL 380

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           V         M++   +P   T+  ++ G  K
Sbjct: 381 VYRVIELLEQMLEHGCVPDVITYTTVINGFCK 412



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 104/239 (43%), Gaps = 6/239 (2%)

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  ++SG+C++ ++     +  S+    + PN  TY  ++ A   +  + + + ++ EMR
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASV---PVPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 411 KIGCVPDVSNYNVVIRLACK---LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           + GC P    Y+V++  AC     G  + AV V  ++     +    +  ++++    QG
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
             ++        +       P   +  A+L  L  A++    +D+   +V  GC  NV  
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +   I  L  NG  +        M+D    P    +A ++ G+ K  + ++A EI +++
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRM 321


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 220/466 (47%), Gaps = 39/466 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFV-------------------- 178
           +  ++ SL KM+ +  V +L ++M  +   P L+T  + +                    
Sbjct: 13  FGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKIL 72

Query: 179 ------------ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
                        LM+       VKK++   D++   G + D+  +G LL+ LCK    +
Sbjct: 73  KLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETR 132

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLV-QMKDAGFEPDIVVYNNL 284
            A KL   + +R  +P +  +++++ G CK+ KLV+  Y L  +M   G  PD++ Y  L
Sbjct: 133 CAIKLLRTIEDRSTRPDVVMYSTIIDGLCKD-KLVDEAYDLYSEMNARGIFPDVITYTTL 191

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G+   G++ +AF LL EM  K  +PN  +Y  LI  LC+  K++E+      M + G 
Sbjct: 192 ICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGV 251

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           + DVV Y+ L+ G+C   ++ +  +I   M+Q G+ P+  +Y  I+    K + ++E + 
Sbjct: 252 KPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMN 311

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ EM     +PD   Y+ +I   CKLG +   +++  EM          ++  ++ G  
Sbjct: 312 LLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLC 371

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
               L +A   F +M  RG+   P   T  AL++ L +  +++  + ++  ++ KG  ++
Sbjct: 372 KNQNLDKAIALFMKMKERGI--QPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCID 429

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           V+ +T+ I  L   G   EA +    M D   +P   TF  ++R L
Sbjct: 430 VWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSL 475



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 180/360 (50%), Gaps = 10/360 (2%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFAS 186
           S +P+ V    +Y  +I  L K +     + L  EM  R   P +IT   +  L+  F  
Sbjct: 145 STRPDVV----MYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT---YTTLICGFCL 197

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
           A  + +A  +L+EM      P+ + +  L+D LCK   VKE+  L   M ++  KP +  
Sbjct: 198 AGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVI 257

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           ++ L+ G+C  G++ +AK + + M   G  PD+  YN +++G  +  ++ +A  LL+EM 
Sbjct: 258 YSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREML 317

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            K   P+  +Y+ LI  LC++ ++        EM   G  A++VTY +L+ G CK++ +D
Sbjct: 318 HKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLD 377

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +   +   M +RGI PN+ TY  ++    K   L++   L   +   G   DV  Y V+I
Sbjct: 378 KAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMI 437

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK G   EA+ + ++ME     P   +F +++   L +    +A +   EM+ +GLL
Sbjct: 438 SGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLL 497



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 185/383 (48%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K+ +      L+   E R  +P ++   ++  ++      ++V +A ++  
Sbjct: 118 YGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVV---MYSTIIDGLCKDKLVDEAYDLYS 174

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+   C    + EA  L +EM  +   P++  + +L+   CKEG
Sbjct: 175 EMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEG 234

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ E+K +L  M   G +PD+V+Y+ L+ GY  +G++  A ++   M + G +P+  SY 
Sbjct: 235 KVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYN 294

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  LC+ ++++EA     EM       D VTY++LI G CK  +I    ++   M  R
Sbjct: 295 IIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHR 354

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   N +TY  ++    K + L++ + L  +M++ G  P+   Y  +I   CK G LK+ 
Sbjct: 355 GQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKG 414

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++  +          ++ VM+ G   +G   EA     +M   G +  P   T + ++
Sbjct: 415 QALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCI--PNAVTFEIII 472

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            SLL   + + A+ +   ++ KG
Sbjct: 473 RSLLEKDENDKAEKLLHEMIAKG 495



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 191/381 (50%), Gaps = 3/381 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLY 251
            I +  +M   G  PD      L++  C    +  +  +  + ++  ++P+     +L+ 
Sbjct: 29  VISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMK 88

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C +G++ ++ +   ++   GF+ D V Y  LL+G  ++G+   A +LL+ +  +   P
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRP 148

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +   Y+ +I  LC+ + ++EA   + EM   G   DV+TYTTLI GFC + ++   + +L
Sbjct: 149 DVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLL 208

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + MI + I PN  TY  ++    K+ +++E   L+  M K G  PDV  Y++++   C +
Sbjct: 209 NEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLV 268

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           GE+++A  ++  M    ++P   S+ ++++G      + EA    +EM+ + ++  P   
Sbjct: 269 GEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMI--PDTV 326

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L++ L +  ++    D+   +  +G   N+  +   +  L  N ++ +A +  + M
Sbjct: 327 TYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKM 386

Query: 552 MDADVMPQPDTFAKLMRGLKK 572
            +  + P   T+  L+ GL K
Sbjct: 387 KERGIQPNKYTYTALIDGLCK 407



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 2/297 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I+ +  +L    +M        L K+M  KG  P+  + ++LI   C + +M  +   
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + + +   TL+ G C   ++ +     D ++ +G   +Q++Y  ++    K
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             E    ++L+  +      PDV  Y+ +I   CK   + EA ++++EM A  + P   +
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ GF   G L+EA     EM+ + +   P   T   L+++L +  KV+ +K++ + 
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNI--NPNIYTYNTLIDTLCKEGKVKESKNLLAV 245

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  KG + +V  ++I +      G V++A    L M+   V P   ++  ++ GL K
Sbjct: 246 MTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCK 302



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 6/188 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMV 190
           N +     Y +LI  L K+ +   +  L +EM  R +   L+T   +  L+      + +
Sbjct: 320 NMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVT---YNSLLDGLCKNQNL 376

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            KAI +  +M + G +P+++ +  L+D LCK   +K+   LF  +  + +   +  +T +
Sbjct: 377 DKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVM 436

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G CKEG   EA  +  +M+D G  P+ V +  ++    +  +   A +LL EM  KG 
Sbjct: 437 ISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGL 496

Query: 310 DPNANSYT 317
            P  N ++
Sbjct: 497 LPFRNFHS 504



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P  + +  I+ +  K +     + L  +M   G VPD+   +++I   C LG++  + +
Sbjct: 7   IPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFS 66

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
           V  ++      P T     ++ G   +G + ++  +  ++V +G  +    YG    LLN
Sbjct: 67  VLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGI---LLN 123

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +  +   A  +   I  +    +V  ++  I  L  +  V EA     +M    + P
Sbjct: 124 GLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFP 183

Query: 559 QPDTFAKLMRGL 570
              T+  L+ G 
Sbjct: 184 DVITYTTLICGF 195


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 227/506 (44%), Gaps = 18/506 (3%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKK 192
           VH    Y  LI    +  +     AL+ +M K   +P ++T      L+  +   + +  
Sbjct: 79  VHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS---LLNGYCHGKRISD 135

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+ ++D+M + G  PD   F  L+  L  ++   EA  L D M +R  +P+L  +  ++ 
Sbjct: 136 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 195

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G    A  +L +M+ A  E D+V++N ++    +   + DA  L KEM  KG  P
Sbjct: 196 GLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP 255

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  +Y+ LI  LC   +  +A++   +M       ++VT+  LI  F K  K     ++ 
Sbjct: 256 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLY 315

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D MI+R I P+  TY  ++      + L++  ++   M    C PDV  YN +I+  CK 
Sbjct: 316 DDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS 375

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             +++   ++ EM    L   T ++  ++ G    G    A + FK+MV  G+   P   
Sbjct: 376 KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV--PPDIM 433

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   LL+ L    K+E A +V+  +     +L++Y +T  I  +   G V +       +
Sbjct: 434 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 493

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI----TFKMYKRRGERD 607
               V P   T+  ++ G   L ++++  E    ++KM  +  +    T+    R   RD
Sbjct: 494 SLKGVKPNVVTYNTMISG---LCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRD 550

Query: 608 LKEKAKKQVDGRKRRARQRRWGGGRS 633
             + A  ++    R  R  R+ G  S
Sbjct: 551 GDKAASAEL---IREMRSCRFVGDAS 573



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 180/390 (46%), Gaps = 12/390 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QPN V     Y  ++  L K         L+ +M   K +     +F  ++      R V
Sbjct: 184 QPNLV----TYGVVVNGLCKRGDTDLALNLLNKMEAAKIE-ADVVIFNTIIDSLCKYRHV 238

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  P+   +  L+  LC      +A++L  +M E+   P+L  F +L
Sbjct: 239 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 298

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGK VEA+ +   M     +PDI  YN+L++G+    ++  A ++ + M  K C
Sbjct: 299 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 358

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y  LI+  C+ +++E+    F EM   G   D VTYTTLI G       D   +
Sbjct: 359 FPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 418

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ P+ +TY  ++       +LE+ +E+   M+K     D+  Y  +I   C
Sbjct: 419 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 478

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++ +  +++  +    + P   ++  M+ G   +  L EA    K+M   G L  P 
Sbjct: 479 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL--PN 536

Query: 490 YGTLKALLNSLLR----AQKVEMAKDVWSC 515
            GT   L+ + LR    A   E+ +++ SC
Sbjct: 537 SGTYNTLIRAHLRDGDKAASAELIREMRSC 566



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 208/449 (46%), Gaps = 4/449 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR ++++     K      L   M K +P     E F  L+   A  +     I + ++M
Sbjct: 15  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVE-FNKLLSAIAKMKKFDVVISLGEKM 73

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            +       + +  L++  C+ S +  A  L  +M +  ++PS+   +SLL G+C   ++
Sbjct: 74  QRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 133

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  ++ QM + G+ PD + +  L+ G     K ++A  L+  M ++GC PN  +Y V+
Sbjct: 134 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 193

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+    + A     +ME +  EADVV + T+I   CK R +D    +   M  +GI
Sbjct: 194 VNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGI 253

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +TY  ++          +  +L+ +M +    P++  +N +I    K G+  EA  
Sbjct: 254 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 313

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++++M   S+ P   ++  +V+GF     L +A + F+ MV +     P   T   L+  
Sbjct: 314 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF--PDVVTYNTLIKG 371

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             ++++VE   +++  +  +G   +   +T  I  LF +G    A      M+   V P 
Sbjct: 372 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 431

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             T++ L+ GL      + A E+ + ++K
Sbjct: 432 IMTYSILLDGLCNNGKLEKALEVFDYMQK 460



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     + ALI +  K  KF     L ++M  R   P + T   +  L+  F    
Sbjct: 289 NPNLV----TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFT---YNSLVNGFCMHD 341

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA ++ + M    C PD   +  L+   CK+  V++  +LF EM  R        +T
Sbjct: 342 RLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 401

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G   +G    A+ V  QM   G  PDI+ Y+ LL G    GK+  A E+   M++ 
Sbjct: 402 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 461

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
               +   YT +I+ +C+  K+++    F  +   G + +VVTY T+ISG C  R +   
Sbjct: 462 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 521

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           Y +L  M + G LPN  TY  ++ AH +  +     EL+ EMR    V D S   +V
Sbjct: 522 YALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 578



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 85/200 (42%), Gaps = 2/200 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ + L G M K   +P +  +N ++    K+ +    +++  +M+   +  G  ++ 
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++++ F  +  +  A     +M+  G    P   TL +LLN     +++  A  +   +V
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMV 144

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
             G   +   +T  IH LF +    EA +    M+     P   T+  ++ GL K  +  
Sbjct: 145 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 204

Query: 578 IAAEITEKVRKMAAERQITF 597
           +A  +  K+     E  +  
Sbjct: 205 LALNLLNKMEAAKIEADVVI 224


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 225/476 (47%), Gaps = 44/476 (9%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V    +Y+ LI +L +  +      L+E+M     +P +   + F  ++     A  
Sbjct: 238 PNSV----IYQTLIHALCENNRVSEALQLLEDMFLMCCEPDV---QTFNDVIHGLCRAGR 290

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL------------------ 231
           + +A ++LD M   G   D   +G L+  LC+   V EA  L                  
Sbjct: 291 IHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISG 350

Query: 232 ------FDEMRER---------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
                 F+E ++          ++P    F  ++ G  K+G LV A  +L +M    FEP
Sbjct: 351 YVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEP 410

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           +++ Y  L++G+ + G++ +A E++  M  KG   N   Y  LI ALC+   +EEA + F
Sbjct: 411 NVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLF 470

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM   GC+ D+ T+ +LI+G CK+ K++    +   M   G++ N +TY  ++ A   +
Sbjct: 471 GEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMR 530

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
           + +++  +L+ EM   GC  D   YN +I+  CK G +++ + ++ EM    + P   S 
Sbjct: 531 DSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISC 590

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            +++ G    G + +A ++ ++M+ RGL   P   T  +L+N L +   V+ A ++++ +
Sbjct: 591 NILISGLCRTGKVNDALKFLQDMIHRGL--TPDIVTYNSLINGLCKMGHVQEASNLFNKL 648

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            ++G   +   +   I      G   +AC      +D+  +P   T++ L+  + K
Sbjct: 649 QSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 209/447 (46%), Gaps = 12/447 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A  Q  Y H++D    LI  L  +  F  +  L+++M+ E   L    +F+++M+ +  A
Sbjct: 89  AGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEG-LLFKESLFILIMKHYGKA 147

Query: 188 RMVKKAIEVLDEM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
            +  +A  +L +M   Y C+P    +  +LD L      + A  +F +M  R   P++  
Sbjct: 148 GLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYT 207

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  ++   C   ++  A  +L  M   G  P+ V+Y  L+    +  ++++A +LL++M 
Sbjct: 208 FGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMF 267

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
              C+P+  ++  +I  LCR  ++ EA +    M   G   D +TY  L+ G C+  ++D
Sbjct: 268 LMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVD 327

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM-GEMRKIGCVPDVSNYNVV 424
               +L+ +      PN + Y  ++  +      EE  +L+   M   G  PD   +N++
Sbjct: 328 EARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIM 383

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I    K G L  A+ + NEM A    P   ++ ++++GF  QG L EA E    M  +GL
Sbjct: 384 IDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGL 443

Query: 485 -LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            L+   Y     L+ +L +   +E A  ++  +  KGC+ ++Y +   I+ L  N  ++E
Sbjct: 444 SLNTVGY---NCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEE 500

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL 570
           A S   DM    V+    T+  L+   
Sbjct: 501 ALSLYHDMFLEGVIANTVTYNTLVHAF 527



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 152/346 (43%), Gaps = 19/346 (5%)

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-RRKGCD 310
           G   + K++E   +L QMKD G      ++  ++  Y + G    A  LL +M     CD
Sbjct: 110 GAVGDFKVIEK--LLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCD 167

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P   SY V++  L   +    A   F +M   G    V T+  ++   C   ++D    +
Sbjct: 168 PTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSL 227

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M + G +PN + Y  ++ A  +   + E ++L+ +M  + C PDV  +N VI   C+
Sbjct: 228 LRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCR 287

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA--- 487
            G + EA  + + M     S    ++  ++HG    G + EA         R LL+    
Sbjct: 288 AGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEA---------RALLNKIPN 338

Query: 488 PQYGTLKALLNSLLRAQKVEMAKD-VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           P       L++  + + + E AKD +++ +V  G E + Y + I I  L   G++  A  
Sbjct: 339 PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALE 398

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
              +M+     P   T+  L+ G  K    + AAEI   V  M+A+
Sbjct: 399 LLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEI---VNSMSAK 441


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 203/412 (49%), Gaps = 10/412 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K  K      ++ EM  E   P  +   ++  L+  F     V  A  + D
Sbjct: 226 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGV---IYTTLIDGFCKLGNVSSAYRLFD 282

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM K    PD   +  ++  LC+   V EA KLF EM  +R +P    +T+L+ G+CKEG
Sbjct: 283 EMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEG 342

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  +  QM   G  P+IV Y  L  G  + G++  A ELL EM RKG + N  +Y 
Sbjct: 343 KMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYN 402

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC+   +++A +   +ME +G   D VTYTTL+  +CKSR++ R +E+L  M+ R
Sbjct: 403 SLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDR 462

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + P  +T+  +M        LE+  +L+  M + G +P+ + YN +I+  C    ++  
Sbjct: 463 ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 522

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKAL 496
             ++  M A  + P  +++ +++ G      + EA    ++MVG+G  L+   Y    AL
Sbjct: 523 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN---AL 579

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
           +    + +K   A++++  +  +G   +   + I+    +  G ++     C
Sbjct: 580 IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELC 631



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 171/341 (50%), Gaps = 3/341 (0%)

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           KL +EM+ +  KP+   +  ++   CK GK+ EA+ VL +M   G  PD V+Y  L+ G+
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            ++G ++ A+ L  EM+++   P+  +YT +I  LC+  ++ EA++ F EM     E D 
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           VTYT LI G+CK  K+   + + + M+Q G+ PN +TY  +     K  E++   EL+ E
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M + G   ++  YN ++   CK G + +AV +  +ME A   P   ++  ++  +     
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           ++ A E  ++M+ R L   P   T   L+N    +  +E  + +   ++ KG   N   +
Sbjct: 449 MVRAHELLRQMLDREL--QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTY 506

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
              I       +++        M    V+P  +T+  L++G
Sbjct: 507 NSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKG 547



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 196/406 (48%), Gaps = 5/406 (1%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
            +++++EM   G +P+ + +  ++  LCK   V EA ++  EM  E   P    +T+L+ 
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+CK G +  A  +  +M+     PD + Y  ++ G  Q G++ +A +L  EM  K  +P
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT LI   C+  KM+EA     +M + G   ++VTYT L  G CK  ++D   E+L
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 386

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M ++G+  N  TY  ++    K   +++ V+LM +M   G  PD   Y  ++   CK 
Sbjct: 387 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS 446

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            E+  A  +  +M    L P   +F V+++GF   G L +  +  K M+ +G++  P   
Sbjct: 447 REMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIM--PNAT 504

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L+        +    +++  +  KG   +   + I I       ++KEA     DM
Sbjct: 505 TYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDM 564

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK--MAAERQI 595
           +         ++  L++G  K      A E+ E++R+  + A+R+I
Sbjct: 565 VGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREI 610



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 149/310 (48%), Gaps = 14/310 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  K    ++L  +M +    P ++T   +  L         V  A E+L 
Sbjct: 331 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT---YTALADGLCKCGEVDTANELLH 387

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM + G E + + +  L++ LCK  ++ +A KL  +M    F P    +T+L+  +CK  
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 447

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++V A  +L QM D   +P +V +N L++G+   G + D  +LLK M  KG  PNA +Y 
Sbjct: 448 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 507

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVV----TYTTLISGFCKSRKIDRCYEILDS 373
            LI+  C    M    RA  E+ R  C   VV    TY  LI G CK+R +   + +   
Sbjct: 508 SLIKQYCIRNNM----RATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRD 563

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+ +G      +Y  ++    K+++  E  EL  +MR+ G V D   YN+   +    G+
Sbjct: 564 MVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGK 623

Query: 434 LKEAVNVWNE 443
           ++  + + +E
Sbjct: 624 MELTLELCDE 633



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y AL   L K  +      L+ EM ++  +L     +  L+     A  + 
Sbjct: 361 PNIV----TYTALADGLCKCGEVDTANELLHEMCRKGLEL-NIYTYNSLVNGLCKAGNID 415

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A++++ +M   G  PD   +  L+DA CK+  +  A +L  +M +R  +P++  F  L+
Sbjct: 416 QAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 475

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  G L + + +L  M + G  P+   YN+L+  Y     M    E+ + M  KG  
Sbjct: 476 NGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVV 535

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+ N+Y +LI+  C+   M+EA     +M   G    V +Y  LI GF K +K     E+
Sbjct: 536 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEAREL 595

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            + M + G++ ++  Y      +  + ++E  +EL  E  +   V D+   N
Sbjct: 596 FEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKN 647



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 2/196 (1%)

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           E  ++L+ EM+  G  P+   YN VI L CK G++ EA  V  EM +  ++P    +  +
Sbjct: 205 EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 264

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + GF   G +  A   F EM  R +  +P + T  A++  L +  +V  A  ++  +V K
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKI--SPDFITYTAVICGLCQTGRVMEADKLFHEMVCK 322

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
             E +   +T  I      G +KEA S    M+   + P   T+  L  GL K      A
Sbjct: 323 RLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTA 382

Query: 580 AEITEKVRKMAAERQI 595
            E+  ++ +   E  I
Sbjct: 383 NELLHEMCRKGLELNI 398


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 205/448 (45%), Gaps = 49/448 (10%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVF 177
           L  R + WA++Q ++ H+   Y A + +L K         + ++M  ++  P + T   +
Sbjct: 19  LASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYT---Y 75

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL------ 231
            I++R          A+E+L +M      P  F+   L+  LCKN  V  A +L      
Sbjct: 76  GIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD 135

Query: 232 ----------------------------FDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
                                       F EM E    PSL  +  LLYG+C+ G++ +A
Sbjct: 136 ECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQA 195

Query: 263 KYVLVQM----KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +L +M    K +   PD+  YN ++SG+ +  ++  A  +L+ M + GC PN  ++  
Sbjct: 196 MTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNT 255

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC   K++EAN  F  M    CE   VTYT LI+G  ++ +ID+  +    M++RG
Sbjct: 256 LLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRG 315

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN  TY  ++       ++E+ +E++  M   G  P+V  Y  VI   CK G+++ A 
Sbjct: 316 VEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERAT 375

Query: 439 NVWNEM---EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            ++N+      A   P + ++  +++    Q   +EA EYF  MV   L++ P     KA
Sbjct: 376 KLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPH--IYKA 433

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           + + L   Q+ E  + V       G EL
Sbjct: 434 MADGLELVQETEKVERVCLEASAHGIEL 461



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 178/361 (49%), Gaps = 9/361 (2%)

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F +   L+AL K     +A K+FD+M  +   P++  +  +L G C + K   A  +L  
Sbjct: 38  FTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQD 97

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M+     P   + N L+S   + GK+  A+EL K +  + C  +  SY +L   LC+ ++
Sbjct: 98  MESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQ 156

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ----RGILPNQL 384
           ++ A   F EME +     ++TY  L+ G+C++ ++++   +L+ MI+      ++P+  
Sbjct: 157 IDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMY 216

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           +Y  ++    K  +L     ++  M K GC P+V  +N ++   C  G+L EA  ++  M
Sbjct: 217 SYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
              +  P   ++ V++ G      + +A +YF +M+ RG+   P   T  AL+  L  A 
Sbjct: 277 VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV--EPNVYTYTALIGGLCDAN 334

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTF 563
           KVE A ++   + + G E NV  +T  I +L   G ++ A     D M +     +PD++
Sbjct: 335 KVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSY 394

Query: 564 A 564
           A
Sbjct: 395 A 395



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 145/327 (44%), Gaps = 7/327 (2%)

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           FE  +  YN  L+   + G  + A ++  +M  K C PN  +Y ++++ LC   K + A 
Sbjct: 33  FEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAAL 92

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               +ME             L+S  CK+ K+D  YE+   +     L ++++Y  +    
Sbjct: 93  ELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSL-DRISYNMLTYGL 151

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM----EAASL 449
            K ++++  + + GEM +   VP +  YN ++   C+ G +++A+ +  EM    + + +
Sbjct: 152 CKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDV 211

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P   S+  ++ GF     L  A    + M+  G   +P   T   LL+ L    K++ A
Sbjct: 212 VPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG--CSPNVVTFNTLLDGLCLTGKLDEA 269

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             ++  +V + CE     +T+ I        + +A  Y +DM+   V P   T+  L+ G
Sbjct: 270 NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGG 329

Query: 570 LKKLYNRQIAAEITEKVRKMAAERQIT 596
           L      + A EI +++     E  + 
Sbjct: 330 LCDANKVEDALEILKRMSSTGREPNVV 356


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 226/482 (46%), Gaps = 6/482 (1%)

Query: 108 ERVINRCGDAGNLGY-RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK 166
           E +I + G AG        +   ++  +     V R+ ++S +++R+F     L+     
Sbjct: 93  EEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLN 152

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
                  T V+  L+   A    +K    V +EM   G +PD      L+ ALC+   V+
Sbjct: 153 TFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVR 212

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A  + +EM      P    FT+L+ G+ +EG +  A  V  +M + G  P  V  N L+
Sbjct: 213 TAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLI 272

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           +GY +MG++ DA   +++    G +P+  +Y   +  LC+   +  A +    M + G +
Sbjct: 273 NGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHD 332

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            DV TY T+I+   K+ ++D    I++ M+ RG LP+  T+  +++A   +  LEE ++L
Sbjct: 333 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDL 392

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             E+   G  PDV  +N++I   CK+G+    + ++ EM+++  +P   ++ +++     
Sbjct: 393 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCS 452

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYG-TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            G L+ A +  KEM   G    P+   T   ++++L +  ++E A++V+  +   G   +
Sbjct: 453 MGKLVNALDLLKEMESNG---CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRS 509

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
              +   I  L     + +A      M+   + P   T+  ++    K  + + AA+I E
Sbjct: 510 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILE 569

Query: 585 KV 586
            +
Sbjct: 570 TM 571



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 185/386 (47%), Gaps = 4/386 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTS 248
           V  A++V+D M + G +PD F +  +++ L KN  + EA  + ++M +R   P    F +
Sbjct: 316 VSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNT 375

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   C + +L EA  +  ++   G  PD+  +N L++   ++G       L +EM+  G
Sbjct: 376 LIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG 435

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C P+  +Y +LI  LC M K+  A     EME +GC    VTY T+I   CK  +I+   
Sbjct: 436 CAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAE 495

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+ D M   GI  + +T+  ++    K + +++  EL+ +M K G  P    YN ++   
Sbjct: 496 EVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHY 555

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G+LK+A ++   M A        ++  +++G    G    A +  + M  +G+   P
Sbjct: 556 CKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTP 615

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF-SNGHVKEACSY 547
           +      ++ SL R   +  A  ++  +   G   +   + I    L    G +KEA  +
Sbjct: 616 K--AYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 673

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKL 573
            ++M++   MP+  +F  L  GL  L
Sbjct: 674 LVEMVNKGFMPEFSSFRMLAEGLLNL 699



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 205/477 (42%), Gaps = 45/477 (9%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V        LIK+L +  +      ++EEM         T  F  LM+ F     +
Sbjct: 192 QPDVV----TLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDET-TFTTLMQGFIEEGSI 246

Query: 191 KKAIEVLDEMPKYGC-----------------------------------EPDEFVFGCL 215
           + A+ V  +M + GC                                   EPD+  +   
Sbjct: 247 EAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTF 306

Query: 216 LDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           +  LC+N  V  A K+ D M +E   P +  + +++    K G+L EAK ++ QM D G 
Sbjct: 307 VHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 366

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD   +N L+       ++ +A +L +E+  KG  P+  ++ +LI ALC++       R
Sbjct: 367 LPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 426

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F EM+ SGC  D VTY  LI   C   K+    ++L  M   G   + +TY  I+ A  
Sbjct: 427 LFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALC 486

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+  +EE  E+  +M   G       +N +I   CK   + +A  +  +M    L P   
Sbjct: 487 KQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNI 546

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
           ++  ++  +  QG L +A +  + M   G  +    YGT   L+N L +A + ++A  + 
Sbjct: 547 TYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGT---LINGLCKAGRTQVALKLL 603

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +  KG      A+   I SLF   ++++A S   +M +    P   T+  + RGL
Sbjct: 604 RGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGL 660



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 208/476 (43%), Gaps = 45/476 (9%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A  + ++  S  VY  +I+ L     F  +  L+ EMR+E  +     V    +  +A  
Sbjct: 79  ALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHE-AGAGVVRSFVESYARL 137

Query: 188 RMVKKAIEVL-DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
           R    A++++ +++  +G + D  V+  LL+ L + S +K    +++EM +R  +P +  
Sbjct: 138 RRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVT 197

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
             +L+   C+  ++  A  +L +M      PD   +  L+ G+ + G +  A  +  +M 
Sbjct: 198 LNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMM 257

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVTYTTLISGFCKSRKI 364
             GC P   +  VLI   C+M ++E+A   +++ E   G E D VTY T +   C++  +
Sbjct: 258 ETGCSPTRVTVNVLINGYCKMGRVEDA-LGYIQKEIADGFEPDQVTYNTFVHCLCQNGHV 316

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
               +++D M+Q G              H+                     PDV  YN V
Sbjct: 317 SHALKVMDLMLQEG--------------HD---------------------PDVFTYNTV 341

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I    K GEL EA  + N+M      P T +F  ++     Q  L EA +  +E+  +GL
Sbjct: 342 INCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGL 401

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +P   T   L+N+L +     +   ++  + + GC  +   + I I  L S G +  A
Sbjct: 402 --SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNA 459

Query: 545 CSYCLDMMDADVMPQPD-TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFK 598
               L  M+++  P+   T+  ++  L K    + A E+ +++      R  +TF 
Sbjct: 460 LDL-LKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFN 514



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 45/205 (21%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI  L K ++      L+E+M KE  +P  IT   +  ++  +     +KKA ++L+
Sbjct: 513 FNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNIT---YNSILTHYCKQGDLKKAADILE 569

Query: 199 EMPKYGCEPDEFVFGCLLDALCK-----------------------------------NS 223
            M   G E D   +G L++ LCK                                    +
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 629

Query: 224 SVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLV-EAKYVLVQMKDAGFEPDIVVY 281
           ++++A  LF EM E  +P     +  +  G C+ G  + EA   LV+M + GF P+   +
Sbjct: 630 NLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSF 689

Query: 282 NNLLSGYAQMGK---MTDAFELLKE 303
             L  G   +G    +  A EL+ E
Sbjct: 690 RMLAEGLLNLGMDDYLISAIELIIE 714


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 203/385 (52%), Gaps = 4/385 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMR-ERFKPSLRHFT 247
           +  A  +L  M + G  P+ + +  L+ ALC     +EA  +  D+MR     P++  + 
Sbjct: 135 LPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYN 194

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+  +C+ G++  A+ ++  M++ G  P +V +N +++G  + G+M DA ++  EM R+
Sbjct: 195 TLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMARE 254

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  SY  L+   C+   + EA   F EM + G   DVVT+T+LI   C++  ++R 
Sbjct: 255 GLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERA 314

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             ++  M +RG+  N+ T+  ++    +   L++ +  M EMR+    P V  YNV+I  
Sbjct: 315 VALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLING 374

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CKLG + EA  + +EMEA  + P   ++  ++ G+   G    A E  ++M+ +G++  
Sbjct: 375 YCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVV-- 432

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T  +L+  L   +++  A +++  ++  G + + + +T  I      G+V++A S 
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
             +M+   V+P   T++ L+ GL K
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGLSK 517



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 212/437 (48%), Gaps = 28/437 (6%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S   +  ++  L K  +      + +EM +E   P  ++   +  L+  +  A  + +A+
Sbjct: 224 SLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVS---YNTLVSGYCKAGCLHEAL 280

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
            V  EM + G  PD   F  L+ A+C+  +++ A  L  +MRER  + +   FT+L+ G+
Sbjct: 281 AVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGF 340

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+ G L +A   + +M++   +P +V YN L++GY ++G+M +A EL+ EM  KG  P+ 
Sbjct: 341 CRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDV 400

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y+ ++   C++   + A     +M + G   D +TY++LI G C+ R++    E+ + 
Sbjct: 401 VTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEK 460

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+Q G+ P++ TY  ++  H K+  +++ + L  EM K G +PDV  Y+V+I    K   
Sbjct: 461 MLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSAR 520

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            KEA  +  ++      P    +  ++H      C   A                ++ ++
Sbjct: 521 TKEAQRLLFKLYYEDPVPDNIKYEALMH------CCRTA----------------EFKSV 558

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ALL        +  A  V+  ++ +  +L+   +++ IH     G++ +A S+   ++ 
Sbjct: 559 VALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLR 618

Query: 554 ADVMPQPDTFAKLMRGL 570
               P   +   L+RGL
Sbjct: 619 CGFSPNSTSTISLVRGL 635



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 187/393 (47%), Gaps = 56/393 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    K        A+  EM ++   P ++T   F  L+     A  +++A+ ++ 
Sbjct: 263 YNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVT---FTSLIHAMCRAGNLERAVALVG 319

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           +M + G   +EF F  L+D  C+N  + +A     EMRE R +PS+  +  L+ G+CK G
Sbjct: 320 QMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLG 379

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+ ++ +M+  G +PD+V Y+ +LSGY ++G    AFEL ++M +KG  P+A +Y+
Sbjct: 380 RMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYS 439

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+ LC   ++ +A   F +M + G + D  TYTTLI G CK   + +   + D MI++
Sbjct: 440 SLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKK 499

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-------------------- 417
           G+LP+ +TY  ++    K    +E   L+ ++     VPD                    
Sbjct: 500 GVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVV 559

Query: 418 ------------------------------VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
                                          S Y+V+I   C+ G + +A++   ++   
Sbjct: 560 ALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRC 619

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
             SP + S + +V G   +G  +EA    +E++
Sbjct: 620 GFSPNSTSTISLVRGLFEEGMTVEADNVIQELL 652



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 167/355 (47%), Gaps = 4/355 (1%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           + PSL  + ++L     +  L  A+ +L  M   G  P++  YN L+      G+  +A 
Sbjct: 116 YAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 299 ELL-KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++  +MR  GC PN  +Y  L+ A CR  +++ A R    M   G    +VT+ T+++G
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNG 234

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK+ +++   ++ D M + G+ P+ ++Y  ++  + K   L E + +  EM + G VPD
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD 294

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +  +I   C+ G L+ AV +  +M    L     +F  ++ GF   G L +A    K
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMK 354

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM  R     P       L+N   +  +++ A+++   +  KG + +V  ++  +     
Sbjct: 355 EM--RECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            G    A      M+   V+P   T++ L+RGL +      A E+ EK+ ++  +
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQ 467



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 21/233 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L + R+ G    L E+M +   +P   T   +  L+        V+KA+ + D
Sbjct: 438 YSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT---YTTLIDGHCKEGNVQKALSLHD 494

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF------DEMRERFK----------PS 242
           EM K G  PD   +  L+D L K++  KEA +L       D + +  K            
Sbjct: 495 EMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAE 554

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
            +   +LL G+  +G + +A  V   M D  ++ D  VY+ L+ G+ + G +  A    K
Sbjct: 555 FKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHK 614

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           ++ R G  PN+ S   L++ L       EA+    E+      AD  T   LI
Sbjct: 615 QLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADAETSKALI 667



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 4/212 (1%)

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ L Y  ++LA      L     L+  M + G  P+V  YN+++R  C  G+ +EA
Sbjct: 115 GYAPSLLAYNAVLLALSDAS-LPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 438 VNV-WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           + V  ++M  A  +P   ++  +V  F   G  ++A E    ++  G +  P   T   +
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG-EVDAAERLVGVMREGGVR-PSLVTFNTV 231

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +N L +A ++E A+ ++  +  +G   +  ++   +      G + EA +   +M    V
Sbjct: 232 VNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           +P   TF  L+  + +  N + A  +  ++R+
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRE 323


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 196/416 (47%), Gaps = 38/416 (9%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           A  VL    K G EPD   F  L++  C    V EA  L D M E + +P L   ++L+ 
Sbjct: 124 AFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLIN 183

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C +G++ EA  ++ +M + GF+PD V Y  +L+   + G    A +L ++M  +    
Sbjct: 184 GLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA 243

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +   Y+++I +LC+    ++A   F EME  G +ADVVTY++LI G C   K D   ++L
Sbjct: 244 SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKML 303

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKI----------------- 412
             MI R I+P+ +T+  ++    K+ +L E  EL  EM  R I                 
Sbjct: 304 REMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 363

Query: 413 ----------------GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
                           GC PD+  Y+++I   CK   + + + ++ E+ +  L P T ++
Sbjct: 364 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 423

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +V GF   G L  A E F+EMV RG+   P   T   LL+ L    ++  A +++  +
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVSRGV--PPSVVTYGILLDGLCDNGELNKALEIFEKM 481

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                 L +  + I IH + +   V +A S    + D  V P   T+  ++ GL K
Sbjct: 482 QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 211/458 (46%), Gaps = 55/458 (12%)

Query: 115 GDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLI 172
           G A  LGY        +P+ +     +  L+       +     AL++ M   K++P L+
Sbjct: 129 GRAWKLGY--------EPDTI----TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLV 176

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL---------------- 216
           T      L+        V +A+ ++D M +YG +PDE  +G +L                
Sbjct: 177 TVST---LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233

Query: 217 -------------------DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
                              D+LCK+ S  +A  LF+EM  +  K  +  ++SL+ G C +
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 293

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK  +   +L +M      PD+V ++ L+  + + GK+ +A EL  EM  +G  P+  +Y
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI   C+   + EAN+ F  M   GCE D+VTY+ LI+ +CK++++D    +   +  
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS 413

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G++PN +TY  ++L   +  +L    EL  EM   G  P V  Y +++   C  GEL +
Sbjct: 414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 473

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ ++ +M+ + ++ G   + +++HG      + +A   F  +  +G+   P   T   +
Sbjct: 474 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGV--KPDVVTYNVM 531

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           +  L +   +  A  ++  +   GC  + + + I I +
Sbjct: 532 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 569



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 178/370 (48%), Gaps = 38/370 (10%)

Query: 148 LSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMPKYGC 205
           L+++ K G     ++  RK + + I   V  + I++           A+ + +EM   G 
Sbjct: 217 LNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGI 276

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
           + D   +  L+  LC +    + AK+  EM  R   P +  F++L+  + KEGKL+EAK 
Sbjct: 277 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKE 336

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +  +M   G  PD + YN+L+ G+ +   + +A ++   M  KGC+P+  +Y++LI + C
Sbjct: 337 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC 396

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           + +++++  R F E+   G   + +TY TL+ GFC+S K++   E+   M+ RG+ P+ +
Sbjct: 397 KAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVV 456

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKI-------------------------------- 412
           TY  ++       EL + +E+  +M+K                                 
Sbjct: 457 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 516

Query: 413 ---GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  PDV  YNV+I   CK G L EA  ++ +M+    +P   ++ +++   LG   L
Sbjct: 517 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGL 576

Query: 470 IEACEYFKEM 479
           I + E  +EM
Sbjct: 577 ISSVELIEEM 586



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 160/323 (49%), Gaps = 6/323 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI  L    K+     ++ EM  R   P ++T   F  L+  F     + +A E+ +
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT---FSALIDVFVKEGKLLEAKELYN 339

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+D  CK + + EA ++FD M  +  +P +  ++ L+  +CK  
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +  ++   G  P+ + YN L+ G+ Q GK+  A EL +EM  +G  P+  +Y 
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+  LC   ++ +A   F +M++S     +  Y  +I G C + K+D  + +  S+  +
Sbjct: 460 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ +TY  ++    KK  L E   L  +M++ GC PD   YN++IR       L  +
Sbjct: 520 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 579

Query: 438 VNVWNEMEAASLSPGTDSFVVMV 460
           V +  EM+    S  + +  +++
Sbjct: 580 VELIEEMKVCGFSADSSTIKMVI 602



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 37/377 (9%)

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T ++  +C++ KL+ A  VL +    G+EPD + ++ L++G+   G++++A  L+  M  
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEA-----------------------NR--------- 334
               P+  + + LI  LC   ++ EA                       NR         
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228

Query: 335 ---AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
               F +ME    +A VV Y+ +I   CK    D    + + M  +GI  + +TY  ++ 
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
                 + ++  +++ EM     +PDV  ++ +I +  K G+L EA  ++NEM    ++P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            T ++  ++ GF  + CL EA + F  MV +G    P   T   L+NS  +A++V+    
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDLMVSKG--CEPDIVTYSILINSYCKAKRVDDGMR 406

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           ++  I +KG   N   +   +     +G +  A     +M+   V P   T+  L+ GL 
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

Query: 572 KLYNRQIAAEITEKVRK 588
                  A EI EK++K
Sbjct: 467 DNGELNKALEIFEKMQK 483



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 167/394 (42%), Gaps = 62/394 (15%)

Query: 225 VKEAAKLFDEM-RERFKPSLRHFT------------SLLYGWCKEGKLVEAKYVLVQMKD 271
           V +A  LF+ M + R  P+   F              L+ G+CK             M+ 
Sbjct: 51  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCK------------GMEL 98

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G E D+     +++ Y +  K+  AF +L    + G +P+  +++ L+   C   ++ E
Sbjct: 99  NGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSE 158

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A      M       D+VT +TLI+G C   ++     ++D M++ G  P+++TY  ++ 
Sbjct: 159 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 218

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME------ 445
              K       ++L  +M +      V  Y++VI   CK G   +A++++NEME      
Sbjct: 219 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKA 278

Query: 446 -----------------------------AASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
                                          ++ P   +F  ++  F+ +G L+EA E +
Sbjct: 279 DVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELY 338

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            EM+ RG+  AP   T  +L++   +   +  A  ++  +V+KGCE ++  ++I I+S  
Sbjct: 339 NEMITRGI--APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC 396

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
               V +      ++    ++P   T+  L+ G 
Sbjct: 397 KAKRVDDGMRLFREISSKGLIPNTITYNTLVLGF 430



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 14/211 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN +     Y  L+    +  K  A   L +EM  R   P ++T   + IL+        
Sbjct: 418 PNTI----TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT---YGILLDGLCDNGE 470

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + KA+E+ ++M K        ++  ++  +C  S V +A  LF  + ++  KP +  +  
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK+G L EA  +  +MK+ G  PD   YN L+  +     +  + EL++EM  K 
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM--KV 588

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           C  +A+S T  I+ +  M      +++F++M
Sbjct: 589 CGFSADSST--IKMVIDMLSDRRLDKSFLDM 617



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 37/278 (13%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K+ DA +L + M +    P    +  L  A+ R ++ +        ME +G E D+ T T
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +I+ +C+ +K+   + +L                                   G   K+
Sbjct: 110 IMINCYCRKKKLLFAFSVL-----------------------------------GRAWKL 134

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PD   ++ ++   C  G + EAV + + M      P   +   +++G   +G + EA
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                 MV  G    P   T   +LN L ++    +A D++  +  +  + +V  ++I I
Sbjct: 195 LVLIDRMVEYGF--QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            SL  +G   +A S   +M    +     T++ L+ GL
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/515 (24%), Positives = 231/515 (44%), Gaps = 75/515 (14%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL-------------- 219
           T  F IL+  +     VK A++ +++M ++GC PD   +  +LDAL              
Sbjct: 213 TNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLL 272

Query: 220 ---------------------CKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
                                C+   +KEA K+ + M R    P++  +  L+ G+C +G
Sbjct: 273 DMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDG 332

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA  +  +M+     PD+V YN L+ G +Q    ++ + L++EM +KG   NA +Y 
Sbjct: 333 KIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYN 392

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS---------------- 361
           ++++ +C+   M EA     +ME +G   D VTY TLI  +CK+                
Sbjct: 393 IILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSK 452

Query: 362 -------------------RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
                              +K+D  Y +L S  +RG + ++++Y  ++L + K E+ +  
Sbjct: 453 GLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRA 512

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L  EM++   +P    YN VI   C+  ++ +A++  NEM    L P   ++ +++HG
Sbjct: 513 LNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHG 572

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F  +G + +A ++  EM+    L  P   T   LL  L R   +E A  +++ +V+KG +
Sbjct: 573 FCLEGNVEKAFQFHNEMIEN--LFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKD 630

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           ++V  +   I SL   G  + A     +M    + P   T+  ++  L      + A E 
Sbjct: 631 IDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEF 690

Query: 583 TEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
           T K+ +         K+ K  G+  L  +  +  D
Sbjct: 691 TLKMVESGIVHDQNLKLGK--GQNVLTSEVSEHFD 723



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 195/400 (48%), Gaps = 5/400 (1%)

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           L T   + +L+  F +   + +A  + DEM K    PD   +  L+D   +     E   
Sbjct: 315 LPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYS 374

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           L +EM ++  K +   +  +L   CK+G + EA   L +M++ G  PD V YN L+  Y 
Sbjct: 375 LIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYC 434

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + GKM  AF ++ EM  KG   +  +   ++  LC  +K++EA        + G   D V
Sbjct: 435 KAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEV 494

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +Y  LI G+ K  K DR   + D M +R I+P+ +TY  ++    +  ++++ ++ + EM
Sbjct: 495 SYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEM 554

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G VPD + YN++I   C  G +++A    NEM      P   +  +++ G   +G L
Sbjct: 555 LENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGML 614

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A + F  +V +G        T   +++SL +  K E A D+ + +  K    + Y + 
Sbjct: 615 EKALKLFNTLVSKG--KDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYK 672

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           + I +L   G +KEA  + L M+++ ++   D   KL +G
Sbjct: 673 VIIAALTDAGRIKEAEEFTLKMVESGIV--HDQNLKLGKG 710



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 188/382 (49%), Gaps = 6/382 (1%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCK---NSSVKEAAKLF-DEMRERFKPSLRHFTS 248
           A ++ ++M +    P+      L+++L +   +SS+  A ++  D ++    P+   F  
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+YG+C E K+ +A   + +M + G  PD V YN +L    +   + +A +LL +M+ KG
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKG 278

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN ++Y +L+   CR+  ++EA +    M R+     V TY  L++GFC   KID  +
Sbjct: 279 LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAF 338

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            I D M +  +LP+ +TY  ++    +  +  E   L+ EM K G   +   YN++++  
Sbjct: 339 RIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWM 398

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G + EA    ++ME   LSP   ++  ++  +   G + +A     EM  +GL    
Sbjct: 399 CKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGL--KI 456

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              TL  +L+ L   +K++ A ++      +G  L+  ++ I I   F +     A +  
Sbjct: 457 DTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLW 516

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
            +M +  +MP   T+  ++ GL
Sbjct: 517 DEMKERQIMPSTITYNSVIGGL 538



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 197/434 (45%), Gaps = 16/434 (3%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI   S+ R    V++L+EEM K+  +      + I+++       + +A   LD+
Sbjct: 355 TYNTLIDGCSQWRDSSEVYSLIEEMDKKGVK-CNAVTYNIILKWMCKKGNMTEATTTLDK 413

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G  PD   +  L+ A CK   + +A ++ DEM  +  K       ++L+  C E K
Sbjct: 414 MEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKK 473

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  +L      G+  D V Y  L+ GY +  K   A  L  EM+ +   P+  +Y  
Sbjct: 474 LDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNS 533

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I  LC+  K+++A     EM  +G   D  TY  +I GFC    +++ ++  + MI+  
Sbjct: 534 VIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENL 593

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+  T   ++    ++  LE+ ++L   +   G   DV  YN +I   CK G+ + A 
Sbjct: 594 FKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAY 653

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           ++  EMEA  L P   ++ V++      G + EA E+  +MV  G++             
Sbjct: 654 DLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHD----------- 702

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +  K+   ++V +  V++  +    A++  I+ L +    K+A    +++    V  
Sbjct: 703 ---QNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVAL 759

Query: 559 QPDTFAKLMRGLKK 572
              T+  LM GL K
Sbjct: 760 NKYTYLNLMEGLIK 773



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 26/294 (8%)

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
            Y     ASK+  Y+     Y  LI    K  K      L +EM KE+  + +T  +  +
Sbjct: 477 AYNLLCSASKR-GYILDEVSYGILILGYFKDEKGDRALNLWDEM-KERQIMPSTITYNSV 534

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-F 239
           +     +R V +AI+ L+EM + G  PDE  +  ++   C   +V++A +  +EM E  F
Sbjct: 535 IGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLF 594

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KP +     LL G C+EG L +A  +   +   G + D+V YN ++S   + GK  +A++
Sbjct: 595 KPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYD 654

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD------------ 347
           LL EM  K   P+  +Y V+I AL    +++EA    ++M  SG   D            
Sbjct: 655 LLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVL 714

Query: 348 -----------VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
                       + Y+  I+  C   K      +   + + G+  N+ TYL++M
Sbjct: 715 TSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLM 768



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 137/299 (45%), Gaps = 11/299 (3%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE--- 331
           EP   + +  +  Y QM +   A ++  +M+R    PN  +   L+ +L R         
Sbjct: 137 EPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILL 196

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A +   +  + G   +  ++  LI G+C   K+    + ++ M + G +P+ ++Y  I+ 
Sbjct: 197 ARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILD 256

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  K+  L+E  +L+ +M+  G  P+   YN+++   C+LG LKEA  V   M   +L P
Sbjct: 257 ALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLP 316

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++ ++V+GF   G + EA     EM    +L  P   T   L++   + +    + +
Sbjct: 317 TVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVL--PDVVTYNTLIDGCSQWRD---SSE 371

Query: 512 VWSCIV---TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           V+S I     KG + N   + I +  +   G++ EA +    M +  + P   T+  L+
Sbjct: 372 VYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLI 430



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 27/249 (10%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y ++I  L + RK       + EM +    L+  E  + I++  F     V+KA +  +
Sbjct: 530 TYNSVIGGLCQSRKVDQAIDKLNEMLENG--LVPDETTYNIIIHGFCLEGNVEKAFQFHN 587

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEG 257
           EM +   +PD +    LL  LC+   +++A KLF+ +  + K   +  + +++   CKEG
Sbjct: 588 EMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEG 647

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN--- 314
           K   A  +L +M+     PD   Y  +++     G++ +A E   +M   G   + N   
Sbjct: 648 KFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKL 707

Query: 315 --------------------SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
                               +Y+  I  LC   K ++A   FVE+ + G   +  TY  L
Sbjct: 708 GKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNL 767

Query: 355 ISGFCKSRK 363
           + G  K RK
Sbjct: 768 MEGLIKRRK 776


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 214/500 (42%), Gaps = 89/500 (17%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL----------- 171
           R   WASKQPN+  +  +Y  +++ L K+  F ++  +++EM+    Q+           
Sbjct: 72  RLLSWASKQPNFRPNSSIYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDS 131

Query: 172 ------------------------ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
                                   + T ++  L+        +K    V   M   G +P
Sbjct: 132 YAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKP 191

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D   F  L+ ALCK   ++ A  + +EM      P  + FT+L+ G+ +EG +  A  V 
Sbjct: 192 DVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVK 251

Query: 267 VQMKDAGFEPDIVVYNNLLSGY----------------AQMGKMTDAFELLKEMRRKGCD 310
            QM DAG     V  N L+ G+                +  GK T A EL  EM+ KGC 
Sbjct: 252 EQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQ 311

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y +LI +LC   K++EA     EME SGC  +V+TY TLI GFCK++KI+   EI
Sbjct: 312 PDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEI 371

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            D M  +G+  N +TY  ++    K   ++E  +LM +M   G  PD   YN ++   C+
Sbjct: 372 FDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCR 431

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G++++A ++   M +                    GC                   P  
Sbjct: 432 EGDIQKAADIVQTMTS-------------------NGC------------------EPDI 454

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   L+  L +A +VE+A  +   I  KG  L  +A+   I +LF     KEA     +
Sbjct: 455 VTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFRE 514

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M +    P   T+  + RGL
Sbjct: 515 MEEKGNTPDAFTYKIVFRGL 534



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 182/386 (47%), Gaps = 58/386 (15%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP + T   F IL++    A  ++ AI V++EM  YG  PDE  F  L+    +  ++  
Sbjct: 190 KPDVST---FNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDG 246

Query: 228 AAKLFDEMRERFKPSLRHFTSLL-YGWCKEGKLVEA-----------KYVLV-----QMK 270
           A ++ ++M +   P      ++L +G+CKEG++ EA           K+ +      +MK
Sbjct: 247 AFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMK 306

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           + G +PD   YN L+      GK+ +A  LL+EM   GC  N  +Y  LI   C+ +K+E
Sbjct: 307 NKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIE 366

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA   F +ME  G   + VTY TLI G CKSR++    +++D MI  G+ P++ TY  ++
Sbjct: 367 EAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSML 426

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL---------------- 434
               ++ ++++  +++  M   GC PD+  Y  +I   CK G +                
Sbjct: 427 TYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMV 486

Query: 435 -------------------KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI-EACE 474
                              KEA+ ++ EME    +P   ++ ++  G    G  I EA +
Sbjct: 487 LTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVD 546

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSL 500
           +  EM+ +G L  P++ +   L   L
Sbjct: 547 FVIEMIEKGFL--PEFSSFYMLAEGL 570



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 13/242 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI  L K R+      LM++M  E  KP   T   +  ++  F     ++KA +++
Sbjct: 386 TYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFT---YNSMLTYFCREGDIQKAADIV 442

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH-FTSLLYGWCKE 256
             M   GCEPD   +G L+  LCK   V+ A++L   ++ +      H +  ++    K 
Sbjct: 443 QTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKR 502

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG-KMTDAFELLKEMRRKGCDPNANS 315
            +  EA  +  +M++ G  PD   Y  +  G +  G  + +A + + EM  KG  P  +S
Sbjct: 503 KRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSS 562

Query: 316 YTVLIQALCRMEKMEEANRAFVE--MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           + +L + LC +  ME+     V+  ME++    + V    +I GF K RK       L  
Sbjct: 563 FYMLAEGLCSL-SMEDTLIKLVDLVMEKANFSQNEV---VMIRGFLKIRKFQDALATLGG 618

Query: 374 MI 375
           ++
Sbjct: 619 LL 620


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 211/451 (46%), Gaps = 12/451 (2%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
            +  ++ +++KM KF  V  L  +M       I+ ++  F IL+  F        A+ +L 
Sbjct: 618  FTRVLTAIAKMNKFDIVIYLFHKMENLG---ISHDLYSFTILIHCFCRCSRFSLALALLG 674

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            +M K G +P     G LL+  C+ +  +EA  L D M E   +P++  + +++ G CK  
Sbjct: 675  KMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNR 734

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             L  A  +   M+  G   D V YN L+SG    G+ TDA  LL++M ++  DPN   +T
Sbjct: 735  DLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFT 794

Query: 318  VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             LI    +   + EA   + EM R     +++TY +LI+GFC   ++     + D M+ +
Sbjct: 795  ALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSK 854

Query: 378  GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            G  P+ +TY  ++    K + +E+ ++L  EM   G V D   YN +I   C+ G+L  A
Sbjct: 855  GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVA 914

Query: 438  VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              V+N M    + P   ++ +++      G  IE      E + +  +      T   ++
Sbjct: 915  QKVFNRMVDCGVPPDIVTYNILLDCLCNNG-KIEKALVMVEDLQKNQMDVDII-TYNIII 972

Query: 498  NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
              + R  KV+ A  ++  +  KG +L+  A+   I  L  NG  +EA   C  M +   M
Sbjct: 973  QGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFM 1032

Query: 558  PQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            P    + + +R     +   ++AE+ + V +
Sbjct: 1033 PSERIYDETLRD----HYTSLSAELIKAVHE 1059



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 188/414 (45%), Gaps = 46/414 (11%)

Query: 137 SYDVYR--ALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKK 192
           S+D+Y    LI    +  +     +++ +M K    P ++T   F  L+  F     +  
Sbjct: 97  SHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVT---FGSLLHGFCLRNRIHD 153

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLL 250
           A  ++  M K G EP+  V+  L+D LCKN  V  A +L +EM  + R    L  + +LL
Sbjct: 154 AFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLL 213

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C  G+  +A  +L  M      PD+  +  L+  + + G + +A EL K+M +    
Sbjct: 214 TGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIG 273

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  LI  LC   ++  A + F  M   GC  +VVTY TLI+GFCKSR+++   ++
Sbjct: 274 PNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKL 333

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M + G++ +  TY  ++  + +  +L    ++   M   G  PD+  + +++   C 
Sbjct: 334 FQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCV 393

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            GE+  A+  +N+M +     G  ++ +M+HG                            
Sbjct: 394 NGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHG---------------------------- 425

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                    L +A KVE A +++  +  +G + +   +TI I  L  NG  +EA
Sbjct: 426 ---------LCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREA 470



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 174/364 (47%), Gaps = 6/364 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS- 242
           F  +   + A+++  EM +    P    F  LL A+  N    E    F +  E F  S 
Sbjct: 40  FLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAI-ANLRRYETVIYFSQQMELFGISH 98

Query: 243 -LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
            L  FT L++ +C+  +L  A  +L +M   G++P IV + +LL G+    ++ DAF L+
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCK 360
             M + G +PN   Y  LI  LC+   +  A     EME+ G   AD+VTY TL++G C 
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           S +  +   IL  M +R I P+  T+  ++ A  K+  L+E  EL  +M +    P+   
Sbjct: 219 SGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVT 278

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN +I   C  G L  A   ++ M +    P   ++  +++GF     + +  + F+ M 
Sbjct: 279 YNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMY 338

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             GL+      T   L++   +  K+ +AKD++S +V+ G   ++    I +H L  NG 
Sbjct: 339 REGLVGDTF--TYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGE 396

Query: 541 VKEA 544
           +  A
Sbjct: 397 IGSA 400



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 178/398 (44%), Gaps = 28/398 (7%)

Query: 71   SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNL------GYRY 124
            SHD+   F IL     R  +  LAL   G +++ G    ++      G+L      G R+
Sbjct: 647  SHDLYS-FTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVT----LGSLLNGFCQGNRF 701

Query: 125  YMWASK---------QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE 175
                S          +PN V    +Y  +I  L K R       +   M  EK  ++   
Sbjct: 702  QEAVSLVDSMAELGLEPNVV----IYNTVINGLCKNRDLNNALEIFYGM--EKKGIVADA 755

Query: 176  V-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            V +  L+    ++     A  +L +M K   +P+   F  L+D   K  ++ EA  L+ E
Sbjct: 756  VTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKE 815

Query: 235  M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
            M R    P++  + SL+ G+C +G+L +AK++   M   G  PD+V YN L++G+ +  +
Sbjct: 816  MIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKR 875

Query: 294  MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
            + D  +L  EM  +G   +A +Y  LI   C+  K+  A + F  M   G   D+VTY  
Sbjct: 876  VEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNI 935

Query: 354  LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
            L+   C + KI++   +++ + +  +  + +TY  I+    + ++++E   L   + + G
Sbjct: 936  LLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKG 995

Query: 414  CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
               D   Y  +I   C+ G  +EA  +   M+     P
Sbjct: 996  VKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMP 1033



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 167/371 (45%), Gaps = 13/371 (3%)

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           G L  A   +S    +A+ +   RE+ +    H            +  +A  + ++M  +
Sbjct: 10  GFLKKAAYPSSGGGASARAYSGYREKLRTGFLHSI----------RFEDALDLFLEMVQS 59

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
              P +V +  LL+  A + +        ++M   G   +  S+T+LI   CR  ++  A
Sbjct: 60  QPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLA 119

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                +M + G +  +VT+ +L+ GFC   +I   + ++ SM++ G  PN + Y  ++  
Sbjct: 120 LSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDC 179

Query: 393 HEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
             K  ++   +EL+ EM K G    D+  YN ++   C  GE ++A  +  +M    ++P
Sbjct: 180 LCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINP 239

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              +F  ++  F+ QG L EA E +K+M+   +   P   T  +L+N L    ++  AK 
Sbjct: 240 DVFTFTALIDAFVKQGNLDEAQELYKQMLQSSI--GPNTVTYNSLINGLCMHGRLYHAKK 297

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
            +  + +KGC  NV  +   I+    +  V++       M    ++    T+  L+ G  
Sbjct: 298 TFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYC 357

Query: 572 KLYNRQIAAEI 582
           ++   ++A +I
Sbjct: 358 QVGKLRVAKDI 368



 Score = 38.9 bits (89), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L+  L    + G+      +MR  +  L     + I++     A  V++A E+   +P  
Sbjct: 387 LLHGLCVNGEIGSAMVKFNDMRSGEKYL-GIVAYNIMIHGLCKADKVEEAWELFCRLPVE 445

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
           G +PD   +  ++  LCKN   +EA +LF  M+E
Sbjct: 446 GVKPDARTYTIMILGLCKNGPRREADELFRRMKE 479


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 215/460 (46%), Gaps = 25/460 (5%)

Query: 79  RILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSY 138
           R +K F+S L           V+++ GL  R          L +  ++  +K  N   + 
Sbjct: 129 RTVKSFNSVL----------NVIIQEGLFYRA---------LEFYNHVIGAKGVNISPNV 169

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
             +  +IK++ K+        +  +M   K +P + T   +  LM     A  + +A+ +
Sbjct: 170 LTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYT---YCTLMDGLCKADRIDEAVSL 226

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           LDEM   GC P    F  L++ LCK   +   AKL D M  +   P+   + +L++G C 
Sbjct: 227 LDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCL 286

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +GKL +A  +L +M  +   P++V Y  +++G  + G+  D   +L  M  +G   N   
Sbjct: 287 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYV 346

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y+ LI  L +  K +EA + F EM    CE + + Y+ +I G C+  K D   E+L  M 
Sbjct: 347 YSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMT 406

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
                PN  TY  +M    +     + +E+  +M K     +   Y+V+I   CK G++K
Sbjct: 407 NNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVK 466

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA+ VW +M      P   ++  M++G    G + +A + + EM+ +   S P   T   
Sbjct: 467 EAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNI 526

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           LLN+L +   +  A D+ + ++ +GC+ ++    I++ +L
Sbjct: 527 LLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTL 566



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 134/557 (24%), Positives = 252/557 (45%), Gaps = 48/557 (8%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           + +    K  +Y      + +LI + + +  F ++  +++ MR EK +++  + FV++ +
Sbjct: 45  KIFKSGPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEK-RVVVEKCFVVIFK 103

Query: 183 RFASARMVKKAIEVLDEMP-KYGCE----------------------------------- 206
            +  A + +KA+ + D M  ++ C+                                   
Sbjct: 104 AYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGV 163

Query: 207 ---PDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEA 262
              P+   F  ++  +CK   V +A ++F +M   + +P +  + +L+ G CK  ++ EA
Sbjct: 164 NISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEA 223

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +L +M+  G  P  V +N L++G  + G +    +L+  M  KGC PN  +Y  LI  
Sbjct: 224 VSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHG 283

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC   K+E+A      M  S C  +VVTY T+I+G  K  +      +L  M +RG   N
Sbjct: 284 LCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVN 343

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           +  Y  ++    K+ + +E ++L  EM    C  +   Y+ VI   C+ G+  EA+ V +
Sbjct: 344 EYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLS 403

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM      P   ++  ++ GF   G   +A E +K+M                L++ L +
Sbjct: 404 EMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQ--NEVCYSVLIHGLCK 461

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD- 561
             KV+ A  VW+ ++ KGC+ +V A+   I+ L + G V++A     +M+  +   QPD 
Sbjct: 462 DGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDV 521

Query: 562 -TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFKMYKR--RGERDLKEKAKKQVD 617
            T+  L+  L K  +   A ++   +     +   +T  ++ R  R + D  +  ++ +D
Sbjct: 522 VTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDGREFLD 581

Query: 618 GRKRRARQRRWGGGRSK 634
           G   R  +R+   G SK
Sbjct: 582 GLVVRLLKRQRVLGASK 598



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 119/256 (46%), Gaps = 22/256 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY A+I  L +  K      ++ EM     KP   T   +  LM+ F  A    KAIE+ 
Sbjct: 381 VYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYT---YSSLMKGFFEAGNGHKAIEMW 437

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M K+    +E  +  L+  LCK+  VKEA  ++ +M  +  KP +  + S++ G    
Sbjct: 438 KDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNA 497

Query: 257 GKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           G + +A  +  +M  ++   +PD+V YN LL+   +   ++ A +LL  M  +GCDP+  
Sbjct: 498 GLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLV 557

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +  + ++ L       +  R F++               L+    K +++    +I++ M
Sbjct: 558 TCIIFLRTLREKLDPPQDGREFLD--------------GLVVRLLKRQRVLGASKIVEVM 603

Query: 375 IQRGILPNQLTYLHIM 390
           +Q+ + P   T+  ++
Sbjct: 604 LQKLLPPKPSTWTRVV 619


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 232/472 (49%), Gaps = 32/472 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI   SK          ++EM ++  +P ++T   +  L+  +  A+ V  A E+ +
Sbjct: 527 YTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVT---YTTLIHAYLKAKKVSVANELFE 583

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-----------------KP 241
            M   GC P+   +  L+D  CK+ ++++A +++  MR                    KP
Sbjct: 584 LMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKP 643

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  + +L+ G CK  K+ +A+ +L  M   G EP+ +VY+ L+ G+ +  K+ +A E+ 
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +M  +G +PN  +Y+ LI  L + ++++   +   +M  + C  ++V YT +I G  K 
Sbjct: 704 HKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            K D  Y+++  M ++G  PN +TY  ++    K  ++++C+EL  EM   GC P+   Y
Sbjct: 764 AKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            V+I   C  G L EA  +  EM+         S+  ++ G+  +   I +    +E+  
Sbjct: 824 TVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKRE--FILSLGLLEEVEK 881

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMA----KDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            G  SAP     K L+++ ++A ++E+A    K+V S  ++   + N+Y  T  I+S   
Sbjct: 882 NG--SAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLY--TSLIYSFSY 937

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
              +  A     DM+   V+P   TF  L+ GL ++   + A ++++ + +M
Sbjct: 938 ASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQM 989



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 194/423 (45%), Gaps = 31/423 (7%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS------SVKEAA 229
           +F  L+  +  +     A ++L +M K  C+P   V+  L+ ++C         + + A 
Sbjct: 380 IFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAE 439

Query: 230 KLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           K ++EM        K ++  F   L G+   GK  +A  V+ +M   GF PD   Y+ ++
Sbjct: 440 KAYNEMLSAGTVLNKVNVVSFARCLCGF---GKFEKAYKVIHEMMGNGFVPDTSTYSEVI 496

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
                  ++ +AF L KEM+  G  P+  +YT+LI    +   +++A+    EM R GCE
Sbjct: 497 GFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCE 556

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             VVTYTTLI  + K++K+    E+ + MI +G  PN +TY  ++  + K   +E+  ++
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 406 MGEMRKIGCVPDVSNY-----------NVVIRLA-----CKLGELKEAVNVWNEMEAASL 449
              MR    +PDV  Y           NVV   A     CK  ++K+A ++   M     
Sbjct: 617 YARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P T  +  ++ GF     L EA E F +MV RG    P   T  +L++ L + +++++ 
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGY--NPNVYTYSSLIDRLFKDKRLDLV 734

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             V S ++   C  N+  +T  I  L       EA    L M +    P   T+  ++ G
Sbjct: 735 LKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDG 794

Query: 570 LKK 572
             K
Sbjct: 795 FGK 797



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/560 (23%), Positives = 233/560 (41%), Gaps = 50/560 (8%)

Query: 48  LKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
           L +  D C  + T  T    NE    ++ I      F     K  + L+     L P L 
Sbjct: 85  LDSHADSCSSHRTLQTVKISNEAFLILDAIRNCDDGFGE---KTHIVLRQFRQKLNPDLV 141

Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
             +++    +  L  ++++WA +Q  Y H+  VY AL+    +          + E+R +
Sbjct: 142 VEILSFL-KSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGD 200

Query: 168 KPQLI----------------------------------TTEVFVILMRRFASARMVKKA 193
             +++                                  T   +  L++ F  A  +  A
Sbjct: 201 DKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTA 260

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
             V  EM + G   DEF  G    ALCK    +EA  L +  +E F P+   +  ++ G 
Sbjct: 261 QLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIE--KEDFVPNTILYNKMISGL 318

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+     EA   L +M+     P++  Y  LL G     ++     +L  M  +GC P+ 
Sbjct: 319 CEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSY 378

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR--CYEI- 370
             +  L+ A C+ +    A +   +ME+  C+   V Y  LI   C   ++     +E+ 
Sbjct: 379 TIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELA 438

Query: 371 ---LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
               + M+  G + N++  +          + E+  +++ EM   G VPD S Y+ VI  
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGF 498

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C    ++ A  ++ EM+   + P   ++ +++  F   G + +A  +  EMV  G    
Sbjct: 499 LCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG--CE 556

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L+++ L+A+KV +A +++  ++ KGC  NV  +T  I     +G++++AC  
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 548 CLDMM-DADVMPQPDTFAKL 566
              M  DAD+ P  D + K+
Sbjct: 617 YARMRGDADI-PDVDMYFKI 635



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           S  PN V    +Y  +I  LSK+ K    + LM  M ++  KP ++T   +  ++  F  
Sbjct: 745 SCAPNIV----IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT---YTAMIDGFGK 797

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF 246
           A  V K +E+  EM   GC P+   +  L++  C    + EA  L +EM++ + P  +H 
Sbjct: 798 AGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWP--KHV 855

Query: 247 TSLLYGWCK--EG---KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           +S    +CK  EG   + + +  +L +++  G  P I++Y  L+  + + G++  A EL 
Sbjct: 856 SS----YCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELH 911

Query: 302 KEMRRKGCDPNA--NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           KE+        A  N YT LI +     K++ A   F +M R G   D+ T+  L+ G  
Sbjct: 912 KEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLI 971

Query: 360 KSRKIDRCYEILDSMIQRGI 379
           + R+ +   ++ DS+ Q  I
Sbjct: 972 RVRRWEEALQLSDSLCQMDI 991


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 221/479 (46%), Gaps = 27/479 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           YR LI  L K  +  AV  L+ ++     KP ++   ++  ++      +++  A ++  
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVV---MYNTIIHSLCKNKLLGDACDLYS 227

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  L+   C    +KEA  L +EM+ +   P +  F +L+    KEG
Sbjct: 228 EMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEG 287

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+  AK VL  M  A  +PD+V YN+L+ GY  + K+ +A  +   M + G  PN  +YT
Sbjct: 288 KMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYT 347

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+ + ++EA   F EM+      D+VTYT+LI G CK+  ++R   +   M ++
Sbjct: 348 TMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQ 407

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+  +Y  ++ A  K   LE   E    +   G   +V  YNV+I   CK     EA
Sbjct: 408 GIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEA 467

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA---------- 487
           +++ ++ME     P   +F  ++     +    +A +  +EM+ RGL  A          
Sbjct: 468 MDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKI 527

Query: 488 -----------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
                      P   T   L++      +++ AK V+  +   G   NV  +TI I  L 
Sbjct: 528 VLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLC 587

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
               V EA S   +M   ++ P   T+  L+  L K ++ + A  + +++++   +  +
Sbjct: 588 KKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDV 646



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 208/456 (45%), Gaps = 31/456 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI +L K  K  A   ++  M K   KP ++T   +  L+  +     VK A  V  
Sbjct: 276 FNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVT---YNSLIDGYFFLNKVKNAKYVFY 332

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
            M + G  P+   +  ++D LCK   V EA  LF+EM+ +   P +  +TSL+ G CK  
Sbjct: 333 SMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNH 392

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  +  +MK+ G +PD+  Y  LL    + G++ +A E  + +  KG   N  +Y 
Sbjct: 393 HLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYN 452

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           V+I  LC+ +   EA     +ME  GC  D +T+ T+I    +  + D+  +IL  MI R
Sbjct: 453 VMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIAR 512

Query: 378 G-----------------------ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           G                       I P+ +TY  +M  +    EL+    +   M ++G 
Sbjct: 513 GLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGV 572

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+V  Y ++I   CK   + EA++++ EM+  ++ P   ++  ++        L  A  
Sbjct: 573 TPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIA 632

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             KEM   G+   P   +   LL+ L ++ ++E AK+++  ++ KG  LNV  +T  I+ 
Sbjct: 633 LLKEMKEHGI--QPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINE 690

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           L   G   EA      M D   MP   TF  ++  L
Sbjct: 691 LCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWAL 726



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 189/434 (43%), Gaps = 43/434 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL   + +  V +L +  E     P L T     ILM  F     +  A  VL 
Sbjct: 66  FNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLN---ILMNCFCHLTHITFAFSVLA 122

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-------------------- 238
            + K G  P+      L+  LC    +K+A    D++  +                    
Sbjct: 123 NILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTG 182

Query: 239 ----------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                            KP +  + ++++  CK   L +A  +  +M   G  P++V YN
Sbjct: 183 ETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYN 242

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+ G+  MG + +AF LL EM+ K  +P+  ++  LI AL +  KM+ A      M ++
Sbjct: 243 ALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKA 302

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
             + DVVTY +LI G+    K+     +  SM Q G+ PN  TY  ++    K++ ++E 
Sbjct: 303 CIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEA 362

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L  EM+    +PD+  Y  +I   CK   L+ A+ +  +M+   + P   S+ +++  
Sbjct: 363 MSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDA 422

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G L  A E+F+ ++ +G     Q  T   ++N L +A     A D+ S +  KGC 
Sbjct: 423 LCKGGRLENAKEFFQRLLVKGYHLNVQ--TYNVMINGLCKADLFGEAMDLKSKMEGKGCM 480

Query: 523 LNVYAWTIWIHSLF 536
            +   +   I +LF
Sbjct: 481 PDAITFKTIICALF 494



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 176/373 (47%), Gaps = 26/373 (6%)

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
           +MV +A+ + +EM      PD   +  L+D LCKN  ++ A  L  +M+E+  +P +  +
Sbjct: 357 KMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSY 416

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T LL   CK G+L  AK    ++   G+  ++  YN +++G  +     +A +L  +M  
Sbjct: 417 TILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEG 476

Query: 307 KGCDPNANSYTVLIQAL-----------------------CRMEKMEEANRAFVEMERSG 343
           KGC P+A ++  +I AL                        R  +++EA      M ++ 
Sbjct: 477 KGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKAC 536

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + DVVTY TL+ G+    ++     +  SM Q G+ PN   Y  ++    KK+ ++E +
Sbjct: 537 IKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAM 596

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L  EM+     P++  Y  +I   CK   L+ A+ +  EM+   + P   S+ +++ G 
Sbjct: 597 SLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 656

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G L  A E F+ ++ +G     Q  T  A++N L +A   + A D+   +  KGC  
Sbjct: 657 CKSGRLEGAKEIFQRLLVKGYHLNVQVYT--AMINELCKAGLFDEALDLQXKMEDKGCMP 714

Query: 524 NVYAWTIWIHSLF 536
           +   + I I +LF
Sbjct: 715 DAVTFDIIIWALF 727



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 216/486 (44%), Gaps = 9/486 (1%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
           A +  M  MR   P    T  F  ++    + +     I +  +    G  PD      L
Sbjct: 49  ASFDRMLLMRPPPP----TFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNIL 104

Query: 216 LDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  C  + +  A  +   + +R + P+     +L+ G C  G++ +A Y   Q+   GF
Sbjct: 105 MNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGF 164

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           + + V Y  L++G  + G+      LL+++      P+   Y  +I +LC+ + + +A  
Sbjct: 165 QLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACD 224

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            + EM   G   +VVTY  L+ GFC    +   + +L+ M  + I P+  T+  ++ A  
Sbjct: 225 LYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALG 284

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+ +++    ++  M K    PDV  YN +I     L ++K A  V+  M  + ++P   
Sbjct: 285 KEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVR 344

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  M+ G   +  + EA   F+EM  + ++  P   T  +L++ L +   +E A  +  
Sbjct: 345 TYTTMIDGLCKEKMVDEAMSLFEEMKYKNMI--PDIVTYTSLIDGLCKNHHLERAIALCK 402

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            +  +G + +VY++TI + +L   G ++ A  +   ++         T+  ++ GL K  
Sbjct: 403 KMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKAD 462

Query: 575 NRQIAAEITEKVR-KMAAERQITFK-MYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGR 632
               A ++  K+  K      ITFK +     E+D  +KA+K +     R  Q       
Sbjct: 463 LFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRL 522

Query: 633 SKAKIL 638
            +AKI+
Sbjct: 523 KEAKIV 528



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 11/314 (3%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           +  + + +++     A +  +A+++  +M   GC PD   F  ++ AL +     +A K+
Sbjct: 446 LNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKI 505

Query: 232 FDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
             EM  R     R           + +L EAK VL  M  A  +PD+V Y  L+ GY  +
Sbjct: 506 LREMIARGLQEAR-----------KVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLV 554

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            ++  A  +   M + G  PN   YT++I  LC+ + ++EA   F EM+      ++VTY
Sbjct: 555 NELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTY 614

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           T+LI   CK+  ++R   +L  M + GI P+  +Y  ++    K   LE   E+   +  
Sbjct: 615 TSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLV 674

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   +V  Y  +I   CK G   EA+++  +ME     P   +F +++     +    +
Sbjct: 675 KGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDK 734

Query: 472 ACEYFKEMVGRGLL 485
           A +   EM+ RGL+
Sbjct: 735 AEKILXEMIARGLM 748



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVIL 180
           +Y  ++  Q     +   Y  +I  L K +      +L EEM+ +   P ++T   +  L
Sbjct: 561 KYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVT---YTSL 617

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-F 239
           +        +++AI +L EM ++G +PD + +  LLD LCK+  ++ A ++F  +  + +
Sbjct: 618 IDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGY 677

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
             +++ +T+++   CK G   EA  +  +M+D G  PD V ++ ++    +  +   A +
Sbjct: 678 HLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEK 737

Query: 300 LLKEMRRKG 308
           +L EM  +G
Sbjct: 738 ILXEMIARG 746


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 227/514 (44%), Gaps = 59/514 (11%)

Query: 106 LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR 165
           L ++++N   D   L  RY+ W+ K+    HS ++   ++ SL+  +K+  + + +++  
Sbjct: 1   LLQQLLNSGADP-ELILRYFTWSQKEFKLSHSLELTFRILNSLAHTKKYSKIRSFLDKFV 59

Query: 166 KEKPQLITTEVF-----------------VILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
           K +     + +F                  +L+  F     + +  E       YG +  
Sbjct: 60  KYEKDYSVSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLS 119

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
                 LL  L K S   +   ++ EM + + + ++  F  ++ G CK GKL  A  V+ 
Sbjct: 120 LISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIE 179

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQM---GKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
            MK  G  P+++ YN L+ GY +M   GKM  A  +LKEM  KG  PN  +Y +LI   C
Sbjct: 180 DMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFC 239

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI--------- 375
           + E +  A R F EM+R G   +VVTY  LI+G C   K+D    + D M+         
Sbjct: 240 KDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVV 299

Query: 376 --------------------------QRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
                                     ++G+ PN +TY  ++ A+ K   +E+   L   M
Sbjct: 300 THNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMM 359

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  P+VS YN +I   C+ G++K A ++ NEM +  LS    ++ +++     +G  
Sbjct: 360 IDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGES 419

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A +   EM  +GL   P + T   L++   R   +  A  V + +  KG + NV    
Sbjct: 420 RKAVKLLDEMFEKGL--NPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHN 477

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           + I      G +++A     +M++  ++P   T+
Sbjct: 478 VLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 147/314 (46%), Gaps = 5/314 (1%)

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           V A +  + M    F  + ++ + L+  + +  K+   FE  K     G   +  S   L
Sbjct: 67  VSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPL 126

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  L +  +  +    + EM +   E +V+++  +++G CK  K++R  ++++ M   G+
Sbjct: 127 LSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGV 186

Query: 380 LPNQLTYLHIMLAHEKKEELEECVE---LMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            PN +TY  ++  + K   + +  +   ++ EM   G  P+   YN++I   CK   +  
Sbjct: 187 SPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSG 246

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ V+ EM+   L P   ++ ++++G    G + EA     +MV   L   P   T   L
Sbjct: 247 AMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDL--EPNVVTHNVL 304

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +N   + + V  A ++++ +  +G + N   +T  I +   +G +++A +    M+D  +
Sbjct: 305 INGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGI 364

Query: 557 MPQPDTFAKLMRGL 570
            P+  T+  L+ GL
Sbjct: 365 FPEVSTYNCLIAGL 378


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 194/386 (50%), Gaps = 8/386 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           YR LI  L K+   G   A ++ ++K + +L+ T+V  + I++      + V  A ++  
Sbjct: 167 YRTLINGLCKI---GETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYS 223

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM      PD   F  L+   C    +KEA  LF EM  +   P +  F+ L+   CK+G
Sbjct: 224 EMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDG 283

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  AK +L  M   G  PD+V Y++L+ GY  + ++  A  +   M R G  P+A+SY 
Sbjct: 284 NITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYN 343

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  L +++ ++EA   F EM   G   D VTY +LI G CK  +I   ++++D M   
Sbjct: 344 IMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNN 403

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  + LTY  ++    K   +++ + L+ +++  G  P +  YN++I   CK G LK A
Sbjct: 404 GIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNA 463

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +V+ ++     S    ++ +M++G   +G   EA     +M   G++  P   T + ++
Sbjct: 464 QDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGII--PDAVTYETII 521

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCEL 523
            +L R  + E A+ +   ++ +G  L
Sbjct: 522 RALFRKDENEKAEKLLREMIIRGLLL 547



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 200/444 (45%), Gaps = 41/444 (9%)

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           E++   P ++T   F IL+  +     +  A  +  ++ K G  P    F  L++ +C N
Sbjct: 86  ELKGITPTIVT---FNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLN 142

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK--------------EGKLVEAKYVLV 267
             +KEA    D +    F      + +L+ G CK              EGKLV    V+ 
Sbjct: 143 GKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMY 202

Query: 268 QM------KDAG---------------FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +      KD                   PD+V +N+L+ G+  +G++ +AF L  EM  
Sbjct: 203 NIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVL 262

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K  +P+  ++++L+ ALC+   +  A      M + G   DVVTY++L+ G+C   ++++
Sbjct: 263 KNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNK 322

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +  +M + G+ P+  +Y  ++    K + ++E + L  EM   G  PD   YN +I 
Sbjct: 323 AKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLID 382

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CKLG +  A  + +EM    +     ++  ++        + +A    K++  +G+  
Sbjct: 383 GLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGI-- 440

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   T   L++ L +  +++ A+DV+  ++ KG  +N + + I I+ L   G   EA  
Sbjct: 441 QPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEV 500

Query: 547 YCLDMMDADVMPQPDTFAKLMRGL 570
               M +  ++P   T+  ++R L
Sbjct: 501 LLSKMENNGIIPDAVTYETIIRAL 524



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 6/349 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I SL K +     + L  EM  ++  P ++T   F  L+  F     +K+A  + 
Sbjct: 201 MYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVT---FNSLILGFCVVGQLKEAFGLF 257

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKE 256
            EM      PD + F  L+DALCK+ ++  A  +    M++   P +  ++SL+ G+C  
Sbjct: 258 HEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLV 317

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +AK+V   M   G  P    YN +++G  ++  + +A  L KEM  KG  P+  +Y
Sbjct: 318 NEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTY 377

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI  LC++ ++  A +   EM  +G  AD++TY +LI   CK+  ID+   ++  +  
Sbjct: 378 NSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKD 437

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI P+  TY  ++    K   L+   ++  ++   G   +   YN++I   CK G   E
Sbjct: 438 QGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNE 497

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           A  + ++ME   + P   ++  ++     +    +A +  +EM+ RGLL
Sbjct: 498 AEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 183/381 (48%), Gaps = 3/381 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLY 251
           AI +  ++   G  P    F  L++  C    +  A  +F + ++  + P+   F +L+ 
Sbjct: 78  AISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLIN 137

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C  GKL EA +    +   GF  D V Y  L++G  ++G+   A ++LK++  K  + 
Sbjct: 138 GICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNT 197

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +   Y ++I +LC+ + + +A + + EM       DVVT+ +LI GFC   ++   + + 
Sbjct: 198 DVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLF 257

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M+ + I P+  T+  ++ A  K   +     ++  M K G +PDV  Y+ ++   C +
Sbjct: 258 HEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLV 317

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            E+ +A +V++ M    ++P   S+ +M++G      + EA   FKEM  +G+  AP   
Sbjct: 318 NEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGI--APDTV 375

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L++ L +  ++  A  +   +   G   ++  +   I  L  N H+ +A +    +
Sbjct: 376 TYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKI 435

Query: 552 MDADVMPQPDTFAKLMRGLKK 572
            D  + P   T+  L+ GL K
Sbjct: 436 KDQGIQPSMYTYNILIDGLCK 456



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 141/335 (42%), Gaps = 39/335 (11%)

Query: 276 PDIVVYNNLLSGY--AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           P IV +N +L     A     T A  L  ++  KG  P   ++ +L+   C + +M  A 
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY------- 386
             F ++ + G     +T+ TLI+G C + K+       D +I  G   +Q++Y       
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGL 174

Query: 387 ---------LHIMLAHE-------------------KKEELEECVELMGEMRKIGCVPDV 418
                    L ++   E                   K + + +  +L  EM      PDV
Sbjct: 175 CKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDV 234

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +N +I   C +G+LKEA  +++EM   +++P   +F ++V      G +  A      
Sbjct: 235 VTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAV 294

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+ +G++  P   T  +L++      +V  AK V+S +   G   + +++ I I+ L   
Sbjct: 295 MMKQGVI--PDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKI 352

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             V EA S   +M    + P   T+  L+ GL KL
Sbjct: 353 KMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKL 387


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 218/452 (48%), Gaps = 8/452 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K  +   V  L+ EMR    +P ++T    V    +F   RM ++A     
Sbjct: 232 YNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFG--RM-ERAYSYFA 288

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G   +   F   +DA CKN  V+EA KLF +MR +  KP+   +T L+ G CK G
Sbjct: 289 EMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAG 348

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L +A  +  +M   G   ++V Y  L+ G  + GK+ +A ++ + M R G   N   YT
Sbjct: 349 RLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYT 408

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI      +  E A     EM+  G E DV  Y  LI G C  +K+D    +L+ M + 
Sbjct: 409 TLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDEC 468

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN + Y +IM A  K  +  E + L+ +M   G  P++  Y  ++   CK G + EA
Sbjct: 469 GLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEA 528

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++ +N+M    L P   ++  +V G    G L +A     EM+ +G+  +       +L+
Sbjct: 529 ISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGM--SLDNVVCTSLM 586

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  L+   ++ A  + + ++  G +L++Y +T ++    +   ++EA     +M++  + 
Sbjct: 587 DGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGIT 646

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           P    +  L+   +KL N + AA +  ++  +
Sbjct: 647 PDAVVYNCLINKCQKLGNMEEAAILQNEMESL 678



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 200/409 (48%), Gaps = 12/409 (2%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R   P ++ T     L+   A   ++  A+  L  + +    P+      +L  L +  S
Sbjct: 124 RSALPSVVDT-----LLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERS 178

Query: 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            + A +LF+++     P++  F  ++   CKEG L EA+ +L +MK  G  PD+V YN+L
Sbjct: 179 SELAWRLFEQLP---APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSL 235

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + GY + G++ +  +L+ EMR  GC P+  +Y  L+   C+  +ME A   F EM+R G 
Sbjct: 236 IDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGV 295

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
            A+VVT++T +  FCK+  +    ++   M  +G+ PN++TY  ++    K   L++ + 
Sbjct: 296 MANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALV 355

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  EM + G   +V  Y V++   CK G++ EA +V+  ME A +      +  ++HG  
Sbjct: 356 LTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHF 415

Query: 465 GQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                  A     EM  +G+ L    YG   AL+  L   QK++ AK + + +   G + 
Sbjct: 416 VYKNSERALSLLSEMKDKGMELDVSLYG---ALIWGLCNLQKLDEAKSLLNKMDECGLKP 472

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           N   +T  + + F      EA +    MMD+   P   T+  L+ GL K
Sbjct: 473 NNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCK 521


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 245/514 (47%), Gaps = 16/514 (3%)

Query: 55  CKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRL------PKLELALQHSGVVLRPGLTE 108
           CK  ++   +G ++E  +  E   +I+    + L      P  E AL       +P    
Sbjct: 10  CKHLSSLSDNGENHEKPYTFEGNRQIVNDICNVLETGAWGPSAENALSALNFKPQPEFVI 69

Query: 109 RVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE- 167
            V+ R  D  N    Y+ W  ++    H  + Y +L+  +++ R F A+  ++ EM    
Sbjct: 70  GVLRRLKDV-NRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAG 128

Query: 168 -KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P + T    + ++     A  +++  +V+  M K+   P    +  L+ A    +   
Sbjct: 129 FGPSVNTC---IEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSD 185

Query: 227 EAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
               LF +M+E  ++P++  FT+L+ G+ KEG++  A  +L +MK +  + DIV+YN  +
Sbjct: 186 MMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCI 245

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
             + ++GK+  A++   E+   G  P+  +YT +I  LC+  +++EA   F  +E++   
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
                Y T+I G+  + K D  Y +L+    +G +P+ + Y  I+    K  +++E + +
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRV 365

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             EM+K    P++S YN++I + C+ G+L  A  + + M+ A L P   +  +MV     
Sbjct: 366 FEEMKK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
              L EAC  F++M  +  +  P   T  +L++ L +  +V+ A  ++  ++   C  N 
Sbjct: 425 SQKLDEACAIFEQMDYK--VCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNS 482

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +T  I + F++G  ++      DM++ +  P 
Sbjct: 483 IVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPD 516



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 195/403 (48%), Gaps = 4/403 (0%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +LI  L K+ +    + + E+M     +   + V+  L++ F +    +   ++  +M  
Sbjct: 452 SLIDGLGKVGRVDDAYKIYEKMLDSDCR-TNSIVYTSLIKNFFNHGRKEDGHKIYKDMVN 510

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
             C PD  +    +D + K    ++   +F+E++ R F P  R ++ L++G  K G   E
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANE 570

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
              +   MK+ G   D   YN ++ G+ + GK+  A++LL+EM+ KG +P   +Y  +I 
Sbjct: 571 TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVID 630

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            L ++++++EA   F E +    E +VV Y++LI GF K  +ID  Y IL+ ++Q+G+ P
Sbjct: 631 GLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  T+  ++ A  K EE+ E +     M+++ C P+   Y ++I   CK+ +  +A   W
Sbjct: 691 NVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFW 750

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM+   + P T S+  M+ G    G + EA   F      G    P      A++  L 
Sbjct: 751 QEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG--GVPDSACYNAMIEGLS 808

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              +   A  ++     +G  ++     + + +L  N  +++A
Sbjct: 809 NGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQA 851



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/530 (20%), Positives = 224/530 (42%), Gaps = 85/530 (16%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           ++  Y  +  ++  LI+  +K  +  +  +L++EM+          ++ + +  F     
Sbjct: 195 QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIV-LYNVCIDSFGKVGK 253

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           V  A +   E+   G +PDE  +  ++  LCK + + EA ++F+ + + R  P    + +
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA----------- 297
           ++ G+   GK  EA  +L + +  G  P ++ YN +L+   +MGK+ +A           
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA 373

Query: 298 -----------------------FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
                                  FEL   M++ G  PN  +  +++  LC+ +K++EA  
Sbjct: 374 APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACA 433

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM---L 391
            F +M+   C  D +T+ +LI G  K  ++D  Y+I + M+      N + Y  ++    
Sbjct: 434 IFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFF 493

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            H +KE+     ++  +M    C PD+   N  +    K GE ++   ++ E+++    P
Sbjct: 494 NHGRKEDGH---KIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVP 550

Query: 452 GTDSFVVMVHGFLG----------------QGCLIE-------------------ACEYF 476
              S+ +++HG +                 QGC+++                   A +  
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLL 610

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           +EM  +G    P   T  ++++ L +  +++ A  ++    +K  ELNV  ++  I    
Sbjct: 611 EEMKTKGF--EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             G + EA     ++M   + P   T+  L+  L K      A EI E +
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVK------AEEINEAL 712



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 197/437 (45%), Gaps = 11/437 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I       KF   ++L+E  R +   P +I     +  +R+      V +A+ V +
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK---VDEALRVFE 367

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM K    P+   +  L+D LC+   +  A +L D M++    P++R    ++   CK  
Sbjct: 368 EMKK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL EA  +  QM      PD + + +L+ G  ++G++ DA+++ ++M    C  N+  YT
Sbjct: 427 KLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYT 486

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+      + E+ ++ + +M    C  D+    T +    K+ + ++   + + +  R
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSR 546

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
             +P+  +Y  ++    K     E  EL   M++ GCV D   YN+VI   CK G++ +A
Sbjct: 547 RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKA 606

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKAL 496
             +  EM+     P   ++  ++ G      L EA   F+E   + + L+   Y +   L
Sbjct: 607 YQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS---L 663

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++   +  +++ A  +   ++ KG   NVY W   + +L     + EA      M +   
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKC 723

Query: 557 MPQPDTFAKLMRGLKKL 573
            P   T+  L+ GL K+
Sbjct: 724 TPNQVTYGILINGLCKV 740



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 175/433 (40%), Gaps = 73/433 (16%)

Query: 49  KTKEDDCKCNNTTDTHGSHNEFSH----DVEKIFRILKKFHSRLPKLELALQHSGVVLRP 104
           K  + DC+ N+   T    N F+H    D  KI++ +   +   P L+L   +   + + 
Sbjct: 472 KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCS-PDLQLLNTYMDCMFKA 530

Query: 105 GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           G  E+             R      K   +V     Y  LI  L K       + L   M
Sbjct: 531 GEPEKG------------RAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
            KE+  ++ T  + I++  F     V KA ++L+EM   G EP    +G ++D L K   
Sbjct: 579 -KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDR 637

Query: 225 VKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           + EA  LF+E + +R + ++  ++SL+ G+ K G++ EA  +L ++   G  P++  +N+
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNS 697

Query: 284 LL-----------------------------------SGYAQMGKMTDAFELLKEMRRKG 308
           LL                                   +G  ++ K   AF   +EM+++G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  SYT +I  L +   + EA   F   + +G   D   Y  +I G     +    +
Sbjct: 758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + +   +RG        LHI   H K      CV L+  + K  C+   +    V+R  
Sbjct: 818 SLFEETRRRG--------LHI---HNKT-----CVVLLDTLHKNDCLEQAAIVGAVLR-- 859

Query: 429 CKLGELKEAVNVW 441
            + G+ + A   W
Sbjct: 860 -ETGKARHAARSW 871


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 197/405 (48%), Gaps = 9/405 (2%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMP 201
           L+  + +M +   V +L ++M +++   I  ++  F IL++ F S   +  A+    ++ 
Sbjct: 85  LMGVVVRMERPDLVISLYQKMERKQ---IRCDIYSFNILIKCFCSCSKLPFALSTFGKIT 141

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLV 260
           K G  PD   F  LL  LC    V EA   F +M E   +P++  FT+L+ G C+EG++V
Sbjct: 142 KLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVL 319
           EA  +L +M + G +P  + Y  ++ G  + G    A  LL++M       PN   Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I +LC+  +  +A   F EM+  G   D+ TY ++I GFC S +     ++L  M++R I
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++ A  K+ +  E  EL  EM   G +P+   YN +I   CK   L  A +
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 381

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  M     SP   +F  ++ G+ G   + +  E   EM  RGL++     T   L++ 
Sbjct: 382 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV--TYNTLIHG 439

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                 +  A D+   +++ G   ++      +  L  NG +K+A
Sbjct: 440 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 484



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 199/416 (47%), Gaps = 14/416 (3%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   F  LM        + +A+ +LD M + G +P +  +G ++D +CK      
Sbjct: 181 RPNVVT---FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVS 237

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E     P++  +++++   CK+G+  +A+ +  +M++ G  PD+  YN+++
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   G+ +DA +LL+EM  +   P+  +Y  LI A  +  K  EA   + EM   G  
Sbjct: 298 VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 357

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            + +TY ++I GFCK  ++D   ++   M  +G  P+  T+  ++  +   + +++ +EL
Sbjct: 358 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 417

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + EM + G V +   YN +I   C +G+L  A+++  +M ++ + P   +   ++ G   
Sbjct: 418 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 477

Query: 466 QGCLIEACEYFKEMVGRGL-LSA--------PQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            G L +A E FK M    + L A        P   T   L+  L+   K   A++++  +
Sbjct: 478 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 537

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +G   +   ++  I  L     + EA    + M      P   TF  L+ G  K
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCK 593



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 186/427 (43%), Gaps = 58/427 (13%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V    +Y A+I SL K  +      L  EM+++   P L T    ++    F S+  
Sbjct: 253 PNVV----IYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV---GFCSSGR 305

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
              A ++L EM +    PD   +  L++A  K     EAA+L+DEM  R   P+   + S
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNS 365

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G+CK+ +L  A+ +   M   G  PD+  +  L+ GY    ++ D  ELL EM R+G
Sbjct: 366 MIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRG 425

Query: 309 CDPNANSYTVLIQA-----------------------------------LCRMEKMEEAN 333
              N  +Y  LI                                     LC   K+++A 
Sbjct: 426 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDAL 485

Query: 334 RAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
             F  M++S           G E DV+TY  LI G     K     E+ + M  RGI+P+
Sbjct: 486 EMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++    K+  L+E  ++   M      P+V  +N +I   CK G + + + ++ 
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFC 605

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM    +      ++ +++GF   G +  A + F+EM+  G+   P   T++ +L     
Sbjct: 606 EMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY--PDTITIRNMLTGFWS 663

Query: 503 AQKVEMA 509
            +++E A
Sbjct: 664 KEELERA 670



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 185/409 (45%), Gaps = 4/409 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L   F   + ++ AI++  +M +    P    F  L+  + +         L+ +M R++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +  +  F  L+  +C   KL  A     ++   G  PD+V +  LL G     ++++A 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +   +M    C PN  ++T L+  LCR  ++ EA      M   G +   +TY T++ G 
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 359 CKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           CK         +L  M +   I+PN + Y  I+ +  K     +   L  EM++ G  PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN +I   C  G   +A  +  EM    +SP   ++  +++ F+ +G   EA E + 
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYD 349

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ RG++  P   T  ++++   +  +++ A+D++  + TKGC  +V+ +T  I     
Sbjct: 350 EMLPRGII--PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 407

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              + +      +M    ++    T+  L+ G   + +   A ++++++
Sbjct: 408 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 456



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 152/330 (46%), Gaps = 21/330 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P + T   F  L+  +  A+ 
Sbjct: 358 PNTI----TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT---FTTLIDGYCGAKR 410

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EMP+ G   +   +  L+   C    +  A  L  +M      P +    +
Sbjct: 411 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 470

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD++ YN L+ G    GK  +A
Sbjct: 471 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 530

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + FV M       +VVT+ TLI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 590

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ + + Y+ ++    K   +   +++  EM   G  PD
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
                 ++       EL+ AV +  +++ +
Sbjct: 651 TITIRNMLTGFWSKEELERAVAMLEDLQMS 680


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 30/440 (6%)

Query: 136 HSYDVYRAL--IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           H +D+  AL   KS++  + F           K  P       + +++ + AS R +   
Sbjct: 52  HEHDITLALEYFKSIANSKSF-----------KHTPL-----TYQMMIEKLASEREMDCV 95

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
             +L +M   G    E +F  ++ +  +  S ++A K F  M++ R KP+++ +  +L  
Sbjct: 96  QYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDA 155

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
              E +      +   MK  G EP++  YN LL    +  ++  A +LL EM  KGCDP+
Sbjct: 156 LLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPD 215

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             SYT LI +LC++ K++EA    +    S     V  Y  LI+G CK    +  +++LD
Sbjct: 216 EVSYTTLISSLCKLGKVKEARELAMSFTPS-----VPVYNALINGVCKEYTFEEAFQLLD 270

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ +GI PN ++Y  I+ A      +E  + ++ +M   GC P++  +  +I+     G
Sbjct: 271 EMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKG 330

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
              EA++ W+ M    + P   ++  ++HG   +  L +A   F +M   G    P   T
Sbjct: 331 GSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING--CCPNVRT 388

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL--D 550
             AL++   +A  ++ A +VW+ ++T GC  NV A+T  +  L  N    +A  YCL  +
Sbjct: 389 YSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQA--YCLIEN 446

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M   +  P   TF   ++GL
Sbjct: 447 MQVENCPPNTVTFNTFIKGL 466



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 205/449 (45%), Gaps = 11/449 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  ++ +L    +F  +  +   M+K+  +P + T   + IL++       V  A ++L
Sbjct: 148 IYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFT---YNILLKALCKNNRVDGAHKLL 204

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
            EM   GC+PDE  +  L+ +LCK   VKEA     E+   F PS+  + +L+ G CKE 
Sbjct: 205 VEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR----ELAMSFTPSVPVYNALINGVCKEY 260

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              EA  +L +M + G +P+++ Y  +++  +  G +  +  +L +M  +GC PN +++T
Sbjct: 261 TFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFT 320

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+         EA   +  M R G   +VV Y  L+ G C  R +     + + M   
Sbjct: 321 SLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEIN 380

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  ++  + K  +L+   E+   M   GC P+V  Y  ++ + C+     +A
Sbjct: 381 GCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQA 440

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M+  +  P T +F   + G  G G +  A + F +M   G    P   T   LL
Sbjct: 441 YCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCF--PNTTTYNELL 498

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +SLL+ ++   A  +   +  +G ELN+  +   I+     G + EA      M+     
Sbjct: 499 DSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTK 558

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           P   T   ++    K     IA ++ +++
Sbjct: 559 PDAITVNIVIDAYCKQGKVNIAIQLMDRL 587



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 195/436 (44%), Gaps = 22/436 (5%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           ++  S  VY ALI  + K   F   + L++EM  +   P +I+   +  ++   + A  V
Sbjct: 241 SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVIS---YTTIINALSDAGNV 297

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           + ++ VL +M   GC P+   F  L+          EA   +D M RE   P++  + +L
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++G C +  L +A  V  QM+  G  P++  Y+ L+ GYA+ G +  A E+   M   GC
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGC 417

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +YT ++  LCR     +A      M+   C  + VT+ T I G C S ++D   +
Sbjct: 418 HPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M   G  PN  TY  ++ +  K     E   L+ +M   G   ++  YN +I   C
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA-- 487
             G L EA+ +  +M      P   +  +++  +  QG +  A +          LSA  
Sbjct: 538 CAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR------LSAGK 591

Query: 488 --PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHVKEA 544
             P      +L++ +     VE A      ++++G   NV  W + +  LFSN GH    
Sbjct: 592 WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGH---- 647

Query: 545 CSYCLDMMDADVMPQP 560
            S  +  +DA  + QP
Sbjct: 648 -SGAVQFLDASSIMQP 662


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 30/440 (6%)

Query: 136 HSYDVYRAL--IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           H +D+  AL   KS++  + F           K  P       + +++ + AS R +   
Sbjct: 52  HEHDITLALEYFKSIANSKSF-----------KHTPL-----TYQMMIEKLASEREMDCV 95

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
             +L +M   G    E +F  ++ +  +  S ++A K F  M++ R KP+++ +  +L  
Sbjct: 96  QYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDA 155

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
              E +      +   MK  G EP++  YN LL    +  ++  A +LL EM  KGCDP+
Sbjct: 156 LLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPD 215

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             SYT LI +LC++ K++EA    +    S     V  Y  LI+G CK    +  +++LD
Sbjct: 216 EVSYTTLISSLCKLGKVKEARELAMSFTPS-----VPVYNALINGVCKEYTFEEAFQLLD 270

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+ +GI PN ++Y  I+ A      +E  + ++ +M   GC P++  +  +I+     G
Sbjct: 271 EMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKG 330

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
              EA++ W+ M    + P   ++  ++HG   +  L +A   F +M   G    P   T
Sbjct: 331 GSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING--CCPNVRT 388

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL--D 550
             AL++   +A  ++ A +VW+ ++T GC  NV A+T  +  L  N    +A  YCL  +
Sbjct: 389 YSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQA--YCLIEN 446

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M   +  P   TF   ++GL
Sbjct: 447 MQVENCPPNTVTFNTFIKGL 466



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 205/449 (45%), Gaps = 11/449 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  ++ +L    +F  +  +   M+K+  +P + T   + IL++       V  A ++L
Sbjct: 148 IYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFT---YNILLKALCKNNRVDGAHKLL 204

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
            EM   GC+PDE  +  L+ +LCK   VKEA     E+   F PS+  + +L+ G CKE 
Sbjct: 205 VEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR----ELAMSFTPSVPVYNALINGVCKEY 260

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              EA  +L +M + G +P+++ Y  +++  +  G +  +  +L +M  +GC PN +++T
Sbjct: 261 TFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFT 320

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI+         EA   +  M R G   +VV Y  L+ G C  R +     + + M   
Sbjct: 321 SLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEIN 380

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  ++  + K  +L+   E+   M   GC P+V  Y  ++ + C+     +A
Sbjct: 381 GCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQA 440

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +   M+  +  P T +F   + G  G G +  A + F +M   G    P   T   LL
Sbjct: 441 YCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCF--PNTTTYNELL 498

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +SLL+ ++   A  +   +  +G ELN+  +   I+     G + EA      M+     
Sbjct: 499 DSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTK 558

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           P   T   ++    K     IA ++ +++
Sbjct: 559 PDAITVNIVIDAYCKQGKVNIAIQLMDRL 587



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 187/416 (44%), Gaps = 17/416 (4%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           ++  S  VY ALI  + K   F   + L++EM  +   P +I+   +  ++   + A  V
Sbjct: 241 SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVIS---YTTIINALSDAGNV 297

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           + ++ VL +M   GC P+   F  L+          EA   +D M RE   P++  + +L
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++G C +  L +A  V  QM+  G  P++  Y+ L+ GYA+ G +  A E+   M   GC
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGC 417

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +YT ++  LCR     +A      M+   C  + VT+ T I G C S ++D   +
Sbjct: 418 HPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M   G  PN  TY  ++ +  K     E   L+ +M   G   ++  YN +I   C
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA-- 487
             G L EA+ +  +M      P   +  +++  +  QG +  A +          LSA  
Sbjct: 538 CAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR------LSAGK 591

Query: 488 --PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GH 540
             P      +L++ +     VE A      ++++G   NV  W + +  LFSN GH
Sbjct: 592 WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGH 647



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 173/381 (45%), Gaps = 11/381 (2%)

Query: 110 VINRCGDAGN----LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR 165
           +IN   DAGN    L     M+A      +H++    +LIK      K G+  AL    R
Sbjct: 287 IINALSDAGNVELSLAVLAKMFARGCSPNLHTF---TSLIKGF--FLKGGSHEALDFWDR 341

Query: 166 KEKPQLITTEV-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
             +  ++   V +  LM    S R +  A+ V ++M   GC P+   +  L+D   K   
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 225 VKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           +  A+++++ M      P++  +T ++   C+     +A  ++  M+     P+ V +N 
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
            + G    G++  A ++  +M   GC PN  +Y  L+ +L +  +  EA     +ME  G
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            E ++VTY T+I G+C +  +    E+L  M+ RG  P+ +T   ++ A+ K+ ++   +
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI 581

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +LM  +      PD+  Y  +I   C    ++EA+     M +  +SP   ++ V+V   
Sbjct: 582 QLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641

Query: 464 LGQGCLIEACEYFKEMVGRGL 484
                   A ++   ++G G 
Sbjct: 642 FSNMGHSGAVQFLDAVLGSGF 662


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 212/435 (48%), Gaps = 4/435 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+  LS   +F     L+E+M     + ++   +  L+R F    M ++A ++  EM
Sbjct: 245 YNVLVNGLSGKGEFDRAKELIEQMSMLGLK-VSAHTYNPLIRGFCKKEMFEEANDLRREM 303

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G  P    +  ++ +LC+   V +A +  D M  E   P L  + +L+YG+ + G  
Sbjct: 304 LGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNF 363

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +++     P +V YN L+ G  + G +  A  +  +M + G  P+  ++T+L
Sbjct: 364 AEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTIL 423

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           ++  C+M  +  A   F EM   G + D + YTT I G  K     + + + + M   G 
Sbjct: 424 VRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGF 483

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    K    ++  EL+ +MR  G VPD   Y  +I      G L++A  
Sbjct: 484 PPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEE 543

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V+++M    + P   ++ V++H +  +G L  A +YF EM  +G+  +P   T  AL+  
Sbjct: 544 VFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV--SPNVITYNALIYG 601

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L +   +++A ++++ + +KG   N Y +TI I+   +  + ++A     DM+D ++ P 
Sbjct: 602 LCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPD 661

Query: 560 PDTFAKLMRGLKKLY 574
             T + LM+ L K Y
Sbjct: 662 SCTHSALMKHLSKDY 676



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 227/521 (43%), Gaps = 51/521 (9%)

Query: 97  HSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGA 156
           HS V  +P    RV+N          R++ W  KQPN+  S   + A++  L+K      
Sbjct: 45  HSAVT-QPEFLLRVLNSVKHRPLTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKP 103

Query: 157 VWALMEEMRKEKPQLITTEVFV----------------ILMRRFASARMVKKAIEVLDEM 200
            + +ME+  + K      +V V                +L++ FA   +++K + V  +M
Sbjct: 104 AYWVMEKAIEVKVDGGVLDVLVGIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKM 163

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
              G  PD      +L  L   S V E  +++  M + + +P++  F +++   CKEG++
Sbjct: 164 VNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEV 223

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  VL  M+  G +P+ V YN L++G +  G+   A EL+++M   G   +A++Y  L
Sbjct: 224 GRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPL 283

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+  C+ E  EEAN    EM   G    VVTY T++   C+  ++      LD M+   +
Sbjct: 284 IRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDL 343

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+ ++Y  ++  + +     E + L  E+R    VP V  YN +I   C+ G L  A  
Sbjct: 344 MPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKG 403

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS------------- 486
           + ++M    L P   +F ++V GF   G L  A E F EM+ RGL               
Sbjct: 404 MKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGEL 463

Query: 487 --------------------APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
                                P   T   L+N L +    + A ++   +  +G   +  
Sbjct: 464 KLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHV 523

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            +T  IH+   +G +++A     DM+   + P   T+  L+
Sbjct: 524 TYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLI 564



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 178/369 (48%), Gaps = 8/369 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  ++ SL ++ +       ++ M  E   P L++    +    R  +     +A+ +  
Sbjct: 315 YNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGN---FAEALLLFS 371

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           E+      P    +  L+D  C+  ++  A  + D+M +    P +  FT L+ G+C+ G
Sbjct: 372 ELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMG 431

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  AK +  +M   G +PD + Y   + G  ++G  + AF + +EM+ +G  P+  +Y 
Sbjct: 432 NLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYN 491

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VLI  LC++   ++AN    +M   G   D VTYT++I     S  + +  E+   M+++
Sbjct: 492 VLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKK 551

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  ++ ++  +  L+   +   EM+  G  P+V  YN +I   CK   +  A
Sbjct: 552 GIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVA 611

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            N++ EME+  +SP   ++ ++++         +A + +K+M+ R +   P   T  AL+
Sbjct: 612 YNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREI--KPDSCTHSALM 669

Query: 498 NSLLRAQKV 506
             L +  K+
Sbjct: 670 KHLSKDYKL 678


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 200/427 (46%), Gaps = 10/427 (2%)

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           +AL  +M + +  L TT  F I++R   SA    +A+E+L +MP+    P+   +  ++ 
Sbjct: 99  FALFADMFRLRLPLCTT-TFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIA 153

Query: 218 ALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-F 274
             C    V+ A  +  EMRER    P+   + +++ GWCK G++ EA  V  +M   G  
Sbjct: 154 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 213

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+ V+YN L+ GY   GK+  A      M  +G      +Y +L+ AL    +  EA  
Sbjct: 214 KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYE 273

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              EM   G   DV TY  LI+G CK   + +  EI ++M +RG+    +TY  ++ A  
Sbjct: 274 LVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALS 333

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           KK +++E  +L  E  + G  PD+  YN +I      G +  A  +  EME   ++P   
Sbjct: 334 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDV 393

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ G    G + EA +   EM  RG+   P   T   L++       V+ A  + +
Sbjct: 394 TYNTLMRGLCLLGRVDEARKLIDEMTERGI--QPDLVTYNTLISGYSMKGDVKDALRIRN 451

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            ++ KG    +  +   I  L  NG   +A +   +M++  + P   T+  L+ GL    
Sbjct: 452 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED 511

Query: 575 NRQIAAE 581
            R I  E
Sbjct: 512 ERAIDDE 518



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 8/249 (3%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           AF L  +M R        ++ ++++ LC   K   A    +E+ R     + VTY T+I+
Sbjct: 98  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARA----LELLRQMPRPNAVTYNTVIA 153

Query: 357 GFCKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           GFC   ++    +I+  M +RG I PNQ TY  ++    K   ++E V++  EM   G V
Sbjct: 154 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 213

Query: 416 -PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+   YN +I   C  G+L  A+   + M    ++    ++ ++VH     G   EA E
Sbjct: 214 KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYE 273

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM G+GL  AP   T   L+N   +   V+ A +++  +  +G    V  +T  I++
Sbjct: 274 LVEEMGGKGL--APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA 331

Query: 535 LFSNGHVKE 543
           L   G V+E
Sbjct: 332 LSKKGQVQE 340


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 224/467 (47%), Gaps = 13/467 (2%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           P L L  +HS +     L   + N      +  +  +M    QP +      +  ++ SL
Sbjct: 20  PNLFLLCRHSRLYYTQPLPSFIDNVDDAVSSFNHILHMRNPVQPIFE-----FNKILSSL 74

Query: 149 SKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            K+  F    +  ++M  ++ +P L T   F IL+  F     +  A  VL ++ K G  
Sbjct: 75  VKLNHFHTAISFSKQMELKQIQPDLFT---FNILINCFCHLGHLNFAFSVLAKIFKLGFH 131

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           PD      L+  LC N  V+EA    D++  + F      + +L+ G CK G+   A  V
Sbjct: 132 PDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQV 191

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L ++     +P++V+YN ++    +   +  A +L  EM  K   P+  +YT LI     
Sbjct: 192 LRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLI 251

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
           + +++EA   F +M     + DV T+  L+ G CK  ++ +   +L  MI++G+  N +T
Sbjct: 252 VGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVT 311

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  +M  +   ++  +   +   M + G  PDV +Y+++I   CK   + EAVN++ EM 
Sbjct: 312 YNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMH 371

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
           + S++P T ++  ++ G L  G + +A +   EM  RG        T  +LL++L +  +
Sbjct: 372 SKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRG--QPADVITYSSLLDALCKNHQ 429

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
           V+ A  + + I  +G + N+Y +TI +  L  NG +K+A +   D++
Sbjct: 430 VDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLL 476



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 187/388 (48%), Gaps = 18/388 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K    G   A ++ +RK    L+   V  +  ++      ++V  A ++  
Sbjct: 172 YGTLINGLCKT---GETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCS 228

Query: 199 EMPKYGCEPD-----EFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYG 252
           EM      PD       ++GCL+        +KEA  LF++M  +  KP +  F  L+ G
Sbjct: 229 EMIVKRIFPDVVTYTTLIYGCLIVG-----RLKEAVGLFNQMLLKNIKPDVYTFNILVDG 283

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CKEG++ +A+ VL  M   G + +IV YN+L+ GY  + +   A  +   M R+G  P+
Sbjct: 284 LCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPD 343

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             SY+++I  LC+ + ++EA   F EM       + VTY +LI G  K  +I   +++++
Sbjct: 344 VQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVN 403

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M  RG   + +TY  ++ A  K  ++++ + L+ +++  G  P++  Y +++   CK G
Sbjct: 404 EMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNG 463

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            LK+A  V+ ++           + VMV+G   +G   EA     +M   G +  P   T
Sbjct: 464 RLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCI--PDAVT 521

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            + L+ +L    K + A  +   ++ +G
Sbjct: 522 YETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 173/399 (43%), Gaps = 38/399 (9%)

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F F  +L +L K +    A     +M  ++ +P L  F  L+  +C  G L  A  VL +
Sbjct: 65  FEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAK 124

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           +   GF PD V    L+ G    GK+ +A     ++  KG   +  SY  LI  LC+  +
Sbjct: 125 IFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGE 184

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
              A +   +++    + +VV Y T+I   CK + +    ++   MI + I P+ +TY  
Sbjct: 185 TRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTT 244

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN--------- 439
           ++        L+E V L  +M      PDV  +N+++   CK GE+K+A N         
Sbjct: 245 LIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQG 304

Query: 440 --------------------------VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
                                     V+N M    ++P   S+ +M++G      + EA 
Sbjct: 305 VDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAV 364

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             FKEM  + +  AP   T  +L++ LL+  ++  A D+ + +  +G   +V  ++  + 
Sbjct: 365 NLFKEMHSKSM--APNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLD 422

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +L  N  V +A +    + D  + P   T+  L+ GL K
Sbjct: 423 ALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCK 461



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 134/295 (45%), Gaps = 2/295 (0%)

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           I  +N +LS   ++     A    K+M  K   P+  ++ +LI   C +  +  A     
Sbjct: 64  IFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLA 123

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           ++ + G   D VT TTLI G C + K+       D +I +G   +Q++Y  ++    K  
Sbjct: 124 KIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTG 183

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           E    ++++ ++  +   P+V  YN +I   CK   +  A ++ +EM    + P   ++ 
Sbjct: 184 ETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYT 243

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            +++G L  G L EA   F +M+ + +   P   T   L++ L +  +++ A++V + ++
Sbjct: 244 TLIYGCLIVGRLKEAVGLFNQMLLKNI--KPDVYTFNILVDGLCKEGEMKKARNVLAVMI 301

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +G + N+  +   +   F      +A      M    V P   +++ ++ GL K
Sbjct: 302 KQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCK 356



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFAS 186
           S  PN V     Y +LI  L K  +    W L+ EM  R +   +IT   +  L+     
Sbjct: 374 SMAPNTV----TYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVIT---YSSLLDALCK 426

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRH 245
              V KAI ++ ++   G +P+ + +  L+D LCKN  +K+A  ++ D + + +   ++ 
Sbjct: 427 NHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKM 486

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +  ++ G CKEG   EA  ++ +M+D G  PD V Y  L+    +  K   A +LL+EM 
Sbjct: 487 YNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMI 546

Query: 306 RKGCDPNAN 314
            +G    +N
Sbjct: 547 VQGSAVGSN 555


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 230/499 (46%), Gaps = 57/499 (11%)

Query: 90  KLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY----MWASK-QPNYVHSYDVYRAL 144
           +L + ++   +V+ P     V+     +G+L   Y     M AS  +PN V    +Y  L
Sbjct: 403 ELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV----IYTTL 458

Query: 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVLDEMPK 202
           IK+  +  +FG    +++EM   K Q I  ++F    L+   + A+ + +A   L EM +
Sbjct: 459 IKTFLQNSRFGDAMRVLKEM---KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVE 261
            G +P+ F +G  +    + S    A K   EMRE    P+    T L+  +CK+GK++E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A      M D G   D   Y  L++G  +  K+ DA E+ +EMR KG  P+  SY VLI 
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
              ++  M++A+  F EM   G   +V+ Y  L+ GFC+S +I++  E+LD M  +G+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N +TY  I+  + K  +L E   L  EM+  G VPD   Y  ++   C+L +++ A+ ++
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
                     GT+           +GC                  A       AL+N + 
Sbjct: 756 ----------GTNK----------KGC------------------ASSTAPFNALINWVF 777

Query: 502 RAQKVEMAKDVWSCIVTKGCE----LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  K E+  +V + ++    +     N   + I I  L   G+++ A      M +A++M
Sbjct: 778 KFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM 837

Query: 558 PQPDTFAKLMRGLKKLYNR 576
           P   T+  L+ G  K+  R
Sbjct: 838 PTVITYTSLLNGYDKMGRR 856



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 200/435 (45%), Gaps = 7/435 (1%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           ++YDV   LI  L K+++     +L+ EM      L     + +L+      R    A  
Sbjct: 278 YTYDV---LIDGLCKIKRLEDAKSLLVEMDSLGVSL-DNHTYSLLIDGLLKGRNADAAKG 333

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           ++ EM  +G     +++ C +  + K   +++A  LFD M      P  + + SL+ G+C
Sbjct: 334 LVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           +E  + +   +LV+MK          Y  ++ G    G +  A+ ++KEM   GC PN  
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            YT LI+   +  +  +A R   EM+  G   D+  Y +LI G  K++++D     L  M
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           ++ G+ PN  TY   +  + +  E     + + EMR+ G +P+      +I   CK G++
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA + +  M    +     ++ V+++G      + +A E F+EM G+G+  AP   +  
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI--APDVFSYG 631

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+N   +   ++ A  ++  +V +G   NV  + + +     +G +++A     +M   
Sbjct: 632 VLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK 691

Query: 555 DVMPQPDTFAKLMRG 569
            + P   T+  ++ G
Sbjct: 692 GLHPNAVTYCTIIDG 706



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 51/368 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K      +  EMR +    I  +VF   +L+  F+    ++KA  + D
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKG---IAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  P+  ++  LL   C++  +++A +L DEM  +   P+   + +++ G+CK G
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-------- 309
            L EA  +  +MK  G  PD  VY  L+ G  ++  +  A  +     +KGC        
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFN 770

Query: 310 -------------------------------DPNANSYTVLIQALCRMEKMEEANRAFVE 338
                                           PN  +Y ++I  LC+   +E A   F +
Sbjct: 771 ALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ 830

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M+ +     V+TYT+L++G+ K  +    + + D  I  GI P+ + Y  I+ A  K+  
Sbjct: 831 MQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890

Query: 399 LEECVELMGEM-----RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
             + + L+ +M        GC   +S    ++    K+GE++ A  V   M      P +
Sbjct: 891 TTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDS 950

Query: 454 DSFVVMVH 461
            + + +++
Sbjct: 951 ATVIELIN 958



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 59/413 (14%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G   D  +FG L D       ++EA  +F   M     P L     LL    +  +L   
Sbjct: 146 GKSDDGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 263 KYVLVQMKDAGFEPDIVVYNNLL-----SGYAQMGK----------------MTDAFELL 301
             V   M +     D+  Y+ L+     +G  Q+GK                +  A +L 
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           + M  KG  P   +Y VLI  LC+++++E+A    VEM+  G   D  TY+ LI G  K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 362 RKID-----------------------------------RCYEILDSMIQRGILPNQLTY 386
           R  D                                   +   + D MI  G++P    Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++  + +++ + +  EL+ EM+K   V     Y  V++  C  G+L  A N+  EM A
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
           +   P    +  ++  FL      +A    KEM  +G+  AP      +L+  L +A+++
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI--APDIFCYNSLIIGLSKAKRM 503

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           + A+     +V  G + N + +  +I           A  Y  +M +  V+P 
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/474 (24%), Positives = 229/474 (48%), Gaps = 10/474 (2%)

Query: 89  PKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           P  E  L       +P     V+ R  D  N    Y+ W  ++    H  + Y +L+  +
Sbjct: 50  PSAENTLSALSFKPQPEFVIGVLRRLKDV-NRAIEYFRWYERRTELPHCPESYNSLLLVM 108

Query: 149 SKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
           ++ R F A+  ++ EM      P + T    + ++     A  +++  +V+  M K+   
Sbjct: 109 ARCRNFDALDQILGEMSVAGFGPSVNTC---IEMVLGCVKANKLREGYDVVQMMRKFKFR 165

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           P    +  L+ A    +       LF +M+E  ++P++  FT+L+ G+ KEG++  A  +
Sbjct: 166 PAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSL 225

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L +MK +  + DIV+YN  +  + ++GK+  A++   E+   G  P+  +YT +I  LC+
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
             +++EA   F  +E++        Y T+I G+  + K D  Y +L+    +G +P+ + 
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIA 345

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  I+    K  +++E +++  EM+K    P++S YN++I + C+ G+L  A  + + M+
Sbjct: 346 YNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQ 404

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
            A L P   +  +MV        L EAC  F+EM  +  +  P   T  +L++ L +  +
Sbjct: 405 KAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK--VCTPDEITFCSLIDGLGKVGR 462

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           V+ A  V+  ++   C  N   +T  I + F++G  ++      DM++ +  P 
Sbjct: 463 VDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 195/403 (48%), Gaps = 4/403 (0%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +LI  L K+ +    + + E+M     +   + V+  L++ F +    +   ++  +M  
Sbjct: 452 SLIDGLGKVGRVDDAYKVYEKMLDSDCR-TNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN 510

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVE 261
             C PD  +    +D + K    ++   +F+E++  RF P  R ++ L++G  K G   E
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANE 570

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
              +   MK+ G   D   YN ++ G+ + GK+  A++LL+EM+ KG +P   +Y  +I 
Sbjct: 571 TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVID 630

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            L ++++++EA   F E +    E +VV Y++LI GF K  +ID  Y IL+ ++Q+G+ P
Sbjct: 631 GLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  T+  ++ A  K EE+ E +     M+++ C P+   Y ++I   CK+ +  +A   W
Sbjct: 691 NLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFW 750

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM+   + P T S+  M+ G    G + EA   F      G    P      A++  L 
Sbjct: 751 QEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG--GVPDSACYNAMIEGLS 808

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              +   A  ++     +G  ++     + + +L  N  +++A
Sbjct: 809 NGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQA 851



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/530 (21%), Positives = 224/530 (42%), Gaps = 85/530 (16%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           ++  Y  +  ++  LI+  +K  +  +  +L++EM+          ++ + +  F     
Sbjct: 195 QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIV-LYNVCIDSFGKVGK 253

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           V  A +   E+   G +PDE  +  ++  LCK + + EA ++F+ + + R  P    + +
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA----------- 297
           ++ G+   GK  EA  +L + +  G  P ++ YN +L+   +MGK+ +A           
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA 373

Query: 298 -----------------------FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
                                  FEL   M++ G  PN  +  +++  LC+ +K++EA  
Sbjct: 374 APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACA 433

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM---L 391
            F EM+   C  D +T+ +LI G  K  ++D  Y++ + M+      N + Y  ++    
Sbjct: 434 MFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFF 493

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            H +KE+     ++  +M    C PD+   N  +    K GE ++   ++ E++A    P
Sbjct: 494 NHGRKEDGH---KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVP 550

Query: 452 GTDSFVVMVHGFLG----------------QGCLIE-------------------ACEYF 476
              S+ +++HG +                 QGC+++                   A +  
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLL 610

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           +EM  +G    P   T  ++++ L +  +++ A  ++    +K  ELNV  ++  I    
Sbjct: 611 EEMKTKGF--EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             G + EA     ++M   + P   T+  L+  L K      A EI E +
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK------AEEINEAL 712



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 216/500 (43%), Gaps = 41/500 (8%)

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKP 169
           I+  G  G +   +  +   + N +   +V Y ++I  L K  +      + E + K + 
Sbjct: 245 IDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNR- 303

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           ++  T  +  ++  + SA    +A  +L+     G  P    + C+L  L K   V EA 
Sbjct: 304 RVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEAL 363

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           K+F+EM++   P+L  +  L+   C+ GKL  A  +   M+ AG  P++   N ++    
Sbjct: 364 KVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLC 423

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           +  K+ +A  + +EM  K C P+  ++  LI  L ++ ++++A + + +M  S C  + +
Sbjct: 424 KSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSI 483

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPN-QL--TYLHIMLAHEKKEE-------- 398
            YT+LI  F    + +  ++I   MI +   P+ QL  TY+  M    + E+        
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI 543

Query: 399 ------------------------LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
                                     E  EL   M++ GCV D   YN+VI   CK G++
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTL 493
            +A  +  EM+     P   ++  ++ G      L EA   F+E   + + L+   Y + 
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS- 662

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++   +  +++ A  +   ++ KG   N+Y W   + +L     + EA      M +
Sbjct: 663 --LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKE 720

Query: 554 ADVMPQPDTFAKLMRGLKKL 573
               P   T+  L+ GL K+
Sbjct: 721 LKCTPNQVTYGILINGLCKV 740



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 174/433 (40%), Gaps = 73/433 (16%)

Query: 49  KTKEDDCKCNNTTDTHGSHNEFSH----DVEKIFRILKKFHSRLPKLELALQHSGVVLRP 104
           K  + DC+ N+   T    N F+H    D  KI++ +   +   P L+L   +   + + 
Sbjct: 472 KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCS-PDLQLLNTYMDCMFKA 530

Query: 105 GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           G  E+             R      K   +V     Y  LI  L K       + L   M
Sbjct: 531 GEPEKG------------RAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
            KE+  ++ T  + I++  F     V KA ++L+EM   G EP    +G ++D L K   
Sbjct: 579 -KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDR 637

Query: 225 VKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           + EA  LF+E + +R + ++  ++SL+ G+ K G++ EA  +L ++   G  P++  +N+
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697

Query: 284 LL-----------------------------------SGYAQMGKMTDAFELLKEMRRKG 308
           LL                                   +G  ++ K   AF   +EM+++G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  SYT +I  L +   + EA   F   + +G   D   Y  +I G     +    +
Sbjct: 758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + +   +RG LP           H K      CV L+  + K  C+   +    V+R  
Sbjct: 818 SLFEETRRRG-LP----------IHNKT-----CVVLLDTLHKNDCLEQAAIVGAVLR-- 859

Query: 429 CKLGELKEAVNVW 441
            + G+ + A   W
Sbjct: 860 -ETGKARHAARSW 871


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 200/427 (46%), Gaps = 10/427 (2%)

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           +AL  +M + +  L TT  F I++R   SA    +A+E+L +MP+    P+   +  ++ 
Sbjct: 139 FALFADMFRLRLPLCTT-TFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIA 193

Query: 218 ALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-F 274
             C    V+ A  +  EMRER    P+   + +++ GWCK G++ EA  V  +M   G  
Sbjct: 194 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 253

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P+ V+YN L+ GY   GK+  A      M  +G      +Y +L+ AL    +  EA  
Sbjct: 254 KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYE 313

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              EM   G   DV TY  LI+G CK   + +  EI ++M +RG+    +TY  ++ A  
Sbjct: 314 LVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALS 373

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           KK +++E  +L  E  + G  PD+  YN +I      G +  A  +  EME   ++P   
Sbjct: 374 KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDV 433

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ G    G + EA +   EM  RG+   P   T   L++       V+ A  + +
Sbjct: 434 TYNTLMRGLCLLGRVDEARKLIDEMTKRGI--QPDLVTYNTLISGYSMKGDVKDALRIRN 491

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            ++ KG    +  +   I  L  NG   +A +   +M++  + P   T+  L+ GL    
Sbjct: 492 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED 551

Query: 575 NRQIAAE 581
            R I  E
Sbjct: 552 ERAIDDE 558


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 230/499 (46%), Gaps = 57/499 (11%)

Query: 90  KLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY----MWASK-QPNYVHSYDVYRAL 144
           +L + ++   +V+ P     V+     +G+L   Y     M AS  +PN V    +Y  L
Sbjct: 403 ELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV----IYTTL 458

Query: 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVLDEMPK 202
           IK+  +  +FG    +++EM   K Q I  ++F    L+   + A+ + +A   L EM +
Sbjct: 459 IKTFLQNSRFGDAMRVLKEM---KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVE 261
            G +P+ F +G  +    + S    A K   EMRE    P+    T L+  +CK+GK++E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A      M D G   D   Y  L++G  +  K+ DA E+ +EMR KG  P+  SY VLI 
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
              ++  M++A+  F EM   G   +V+ Y  L+ GFC+S +I++  E+LD M  +G+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N +TY  I+  + K  +L E   L  EM+  G VPD   Y  ++   C+L +++ A+ ++
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
                     GT+           +GC                  A       AL+N + 
Sbjct: 756 ----------GTNK----------KGC------------------ASSTAPFNALINWVF 777

Query: 502 RAQKVEMAKDVWSCIVTKGCE----LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  K E+  +V + ++    +     N   + I I  L   G+++ A      M +A++M
Sbjct: 778 KFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM 837

Query: 558 PQPDTFAKLMRGLKKLYNR 576
           P   T+  L+ G  K+  R
Sbjct: 838 PTVITYTSLLNGYDKMGRR 856



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 200/435 (45%), Gaps = 7/435 (1%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE 195
           ++YDV   LI  L K+++     +L+ EM      L     + +L+      R    A  
Sbjct: 278 YTYDV---LIDGLCKIKRLEDAKSLLVEMDSLGVSL-DNHTYSLLIDGLLKGRNADAAKG 333

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           ++ EM  +G     +++ C +  + K   +++A  LFD M      P  + + SL+ G+C
Sbjct: 334 LVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           +E  + +   +LV+MK          Y  ++ G    G +  A+ ++KEM   GC PN  
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            YT LI+   +  +  +A R   EM+  G   D+  Y +LI G  K++++D     L  M
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           ++ G+ PN  TY   +  + +  E     + + EMR+ G +P+      +I   CK G++
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA + +  M    +     ++ V+++G      + +A E F+EM G+G+  AP   +  
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI--APDVFSYG 631

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+N   +   ++ A  ++  +V +G   NV  + + +     +G +++A     +M   
Sbjct: 632 VLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK 691

Query: 555 DVMPQPDTFAKLMRG 569
            + P   T+  ++ G
Sbjct: 692 GLHPNAVTYCTIIDG 706



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 194/443 (43%), Gaps = 12/443 (2%)

Query: 182 RRFASARM-VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           + F +A + V  A+++ + M   G  P ++ +  L+D LCK   +++A  L  EM     
Sbjct: 249 KEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGV 308

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
               H  SLL     +G+  +A   LV +M   G      +Y+  +   ++ G M  A  
Sbjct: 309 SLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKA 368

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L   M   G  P A +Y  LI+  CR + + +     VEM++        TY T++ G C
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMC 428

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
            S  +D  Y I+  MI  G  PN + Y  ++    +     + + ++ EM++ G  PD+ 
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN +I    K   + EA +   EM    L P   ++   + G++       A +Y KEM
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM 548

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G+L  P       L+N   +  KV  A   +  +V +G   +   +T+ ++ LF N 
Sbjct: 549 RECGVL--PNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAAERQITFK 598
            V +A     +M    + P   ++  L+ G  KL N Q A+ I  E V +      I + 
Sbjct: 607 KVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYN 666

Query: 599 M----YKRRGERDLKEKAKKQVD 617
           M    + R GE    EKAK+ +D
Sbjct: 667 MLLGGFCRSGE---IEKAKELLD 686



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 51/368 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K      +  EMR +    I  +VF   +L+  F+    ++KA  + D
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKG---IAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  P+  ++  LL   C++  +++A +L DEM  +   P+   + +++ G+CK G
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-------- 309
            L EA  +  +MK  G  PD  VY  L+ G  ++  +  A  +     +KGC        
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFN 770

Query: 310 -------------------------------DPNANSYTVLIQALCRMEKMEEANRAFVE 338
                                           PN  +Y ++I  LC+   +E A   F +
Sbjct: 771 ALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ 830

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M+ +     V+TYT+L++G+ K  +    + + D  I  GI P+ + Y  I+ A  K+  
Sbjct: 831 MQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890

Query: 399 LEECVELMGEM-----RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
             + + L+ +M        GC   +S    ++    K+GE++ A  V   M      P +
Sbjct: 891 TTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDS 950

Query: 454 DSFVVMVH 461
            + + +++
Sbjct: 951 ATVIELIN 958



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 59/413 (14%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G   D  +FG L D       ++EA  +F   M     P L     LL    +  +L   
Sbjct: 146 GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 263 KYVLVQMKDAGFEPDIVVYNNLL-----SGYAQMGK----------------MTDAFELL 301
             V   M +     D+  Y+ L+     +G  Q+GK                +  A +L 
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           + M  KG  P   +Y VLI  LC+++++E+A    VEM+  G   D  TY+ LI G  K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 362 RKID-----------------------------------RCYEILDSMIQRGILPNQLTY 386
           R  D                                   +   + D MI  G++P    Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++  + +++ + +  EL+ EM+K   V     Y  V++  C  G+L  A N+  EM A
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
           +   P    +  ++  FL      +A    KEM  +G+  AP      +L+  L +A+++
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI--APDIFCYNSLIIGLSKAKRM 503

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           + A+     +V  G + N + +  +I           A  Y  +M +  V+P 
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 194/400 (48%), Gaps = 7/400 (1%)

Query: 173 TTEVF--VILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEA 228
           T +VF   +L++     +  ++A++++  M + G  C P+   +  ++    K   V +A
Sbjct: 81  TPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKA 140

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
             LF EM +R   P +    S++ G CK   + +A+ VL QM D    PD   YN+L+ G
Sbjct: 141 YTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHG 200

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           Y   G++ +A  +LK+M R G  PN  +Y++LI  LC+     EA      M +S    +
Sbjct: 201 YLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPN 260

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V TY  L+ G+     +     ++D M+Q G+ P+   +   + A+ K   L+E +    
Sbjct: 261 VATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFN 320

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +MR+ G +PD+ +Y  +I   CK+G L  A++ + +M    LSP    F  ++HGF   G
Sbjct: 321 KMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYG 380

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
              +A E F EM+ RG+   P       +++ L +  KV  AK ++  +     + NV +
Sbjct: 381 KWEKAEELFYEMMDRGI--RPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVS 438

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
           +   IH  F  G + E      DM+   + P   TF  L+
Sbjct: 439 YNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLL 478



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 146/289 (50%), Gaps = 1/289 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L+  + S+  +K+A+ +L +M ++G  P+   +  L+D LCK     EA ++ + M + R
Sbjct: 197 LVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSR 256

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P++  +  LL+G+  +G LVE   ++  M   G  PD  ++N  +  Y + G++ +A 
Sbjct: 257 GNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAM 316

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
               +MR++G  P+  SY  +I  LC++ +++ A   F +M   G   D+V +T LI GF
Sbjct: 317 LTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGF 376

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
               K ++  E+   M+ RGI P  + +  ++    K+ ++ E   L   M      P+V
Sbjct: 377 SMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNV 436

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            +YN +I      G+L E + + ++M +  L P   +F  ++   L  G
Sbjct: 437 VSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMG 485



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 173/405 (42%), Gaps = 41/405 (10%)

Query: 207 PDEFVFGCLLDALCKNSSVKEA-AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           P    +  L+   C    +  A A L   ++   + +   FT +L   C E +  +A  +
Sbjct: 11  PTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTSDAMNI 70

Query: 266 LVQ-MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNANSYTVLIQA 322
           +++     G  PD+  Y  LL G     K  +A +L+  M   G  C PN  SYT +I  
Sbjct: 71  VIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHG 130

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
             + +++ +A   F EM   G   DVVT  ++I G CK + +D+  E+L  M  + I+P+
Sbjct: 131 FFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPD 190

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
             TY  ++  +    +L+E V ++ +M + G  P+   Y+++I   CK G   EA  + N
Sbjct: 191 CTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILN 250

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIE------------------------------- 471
            M  +  +P   ++  ++HG+  +G L+E                               
Sbjct: 251 SMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCG 310

Query: 472 ----ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
               A   F +M  +GL+  P   +   +++ L +  +++ A   +  ++  G   ++  
Sbjct: 311 RLDEAMLTFNKMRQQGLM--PDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVV 368

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +T  IH     G  ++A     +MMD  + P    F  ++  L K
Sbjct: 369 FTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFK 413



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 4/228 (1%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            +F I +  +     + +A+   ++M + G  PD   +G ++D LCK   +  A   F +
Sbjct: 297 HIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQ 356

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  +   P +  FT+L++G+   GK  +A+ +  +M D G  P +VV+  ++    + GK
Sbjct: 357 MIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGK 416

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +T+A  L   M      PN  SY  +I       K++E  +   +M   G + + VT+ T
Sbjct: 417 VTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNT 476

Query: 354 LISGFCK---SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           L+           +  C  ++DS  + G + + LT    ML+   K +
Sbjct: 477 LLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTD 524



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 339 MERSGCE---ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           M R+G +      VTYT LIS  C    ++  +  L  +I+ G+  N +++  I+     
Sbjct: 1   MARAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCA 60

Query: 396 KEELEECVELMGE-MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPG 452
           ++   + + ++     K+GC PDV +Y V+++  C   + +EAV++ + M  +     P 
Sbjct: 61  EKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPN 120

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             S+  ++HGF  +  + +A   F EM+ RG+   P   T  ++++ L + Q ++ A++V
Sbjct: 121 VVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGI--PPDVVTCNSIIDGLCKVQAMDKAEEV 178

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +  K    +   +   +H   S+G +KEA      M      P   T++ L+  L K
Sbjct: 179 LRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCK 238

Query: 573 LYNRQIAAEI 582
                 A EI
Sbjct: 239 FGGHTEAREI 248



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K+ +  A  +   +M  +   P ++   VF  L+  F+     +KA E+  
Sbjct: 334 YGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIV---VFTNLIHGFSMYGKWEKAEELFY 390

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P   VF  ++D L K   V EA  LFD M     KP++  + ++++G+   G
Sbjct: 391 EMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAG 450

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL E   +L  M   G +P+ V +N LL                 +M   G  P+  +  
Sbjct: 451 KLDEVLKLLDDMLSVGLKPNAVTFNTLLD----------------DMLSMGLKPDVATCN 494

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            LI + C   ++E+    F EM     + D VT
Sbjct: 495 TLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVT 527


>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
 gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 555

 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 187/403 (46%), Gaps = 13/403 (3%)

Query: 92  ELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS-- 149
           E AL   G  L   L   V++R      L +R+++WAS Q  Y H    Y  +I  LS  
Sbjct: 100 EAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQDGYEHEAATYNDVIDILSGT 159

Query: 150 --KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
             K R+FG +  +++ M++ + + +  +  + ++R +    +            +    P
Sbjct: 160 RYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKRRVRMRTPP 219

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
           +      LLDA CK   V+EA  +F  ++ +   +   ++ L +GWC+      A  VL 
Sbjct: 220 ETDALNVLLDAFCKCGMVREAEVVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLE 279

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQALC 324
           +M      P+   YN  +  +   G +++A +L + MR +G     P A +Y+++I AL 
Sbjct: 280 EMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALA 339

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           +  +MEE      EM + GC  DV TY  LI G     K+D  Y +LD M + G  P+ +
Sbjct: 340 KAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIV 399

Query: 385 TY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           TY   L ++   +K ++  E  E M E     C P V  YN+++ +  ++ E   A+N+W
Sbjct: 400 TYNCFLKVLCGLQKADDALELCERMIEAH---CEPSVHTYNMLMVMFFEMREPDRAINIW 456

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            EM+        D++  M+ G    G   +A     E++ RG+
Sbjct: 457 IEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGM 499



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 120/266 (45%), Gaps = 39/266 (14%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R ++  L   E + IL   +  AR  K+A++VL+EM +    P+ F +   +D+ C    
Sbjct: 246 RVKRKLLGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGL 305

Query: 225 VKEAAKLFDEMRER----FKPSLRHFTSLLYGWCKEGKL--------------------- 259
           V EA  LF+ MR        P+ + ++ ++    K G++                     
Sbjct: 306 VSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVST 365

Query: 260 -------------VEAKY-VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
                        ++A Y VL +M  AGF PDIV YN  L     + K  DA EL + M 
Sbjct: 366 YKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMI 425

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
              C+P+ ++Y +L+     M + + A   ++EM++ GC   V TY T+I G   S + +
Sbjct: 426 EAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTE 485

Query: 366 RCYEILDSMIQRGILPNQLTYLHIML 391
               +LD +I RG+  +   +  IML
Sbjct: 486 DATALLDEVINRGMKLSYKKFDAIML 511



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 10/318 (3%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P+    N LL  + + G + +A  +   ++RK    NA +Y++L    CR    + A + 
Sbjct: 219 PETDALNVLLDAFCKCGMVREAEVVFSRVKRKLLG-NAETYSILFFGWCRARDPKRAMKV 277

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIMLA 392
             EM +     +  TY   I  FC +  +    ++ + M   G     P   TY  ++ A
Sbjct: 278 LEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAA 337

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K  ++EEC EL+ EMRK GC+PDVS Y  +I     + +L  A  V +EM  A   P 
Sbjct: 338 LAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPD 397

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLLRAQKVEMAK 510
               +V  + FL   C ++  +   E+  R + +   P   T   L+      ++ + A 
Sbjct: 398 ----IVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAI 453

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++W  +  +GC   V  +   I  LF +G  ++A +   ++++  +      F  +M  L
Sbjct: 454 NIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGMKLSYKKFDAIMLRL 513

Query: 571 KKLYNRQIAAEITEKVRK 588
             + N      ++E +R+
Sbjct: 514 SAVGNLGAIHRLSEHMRR 531


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 182/387 (47%), Gaps = 3/387 (0%)

Query: 79  RILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP-NYVHS 137
           +++  FH  L   +  L        P L   V+ R  + G    +++ +       YVH 
Sbjct: 30  KLILSFHQTLDD-QFILSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHD 88

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
              +   I   +++     VW+L+  MR  +    + + F I+  R+AS+    KA+++ 
Sbjct: 89  ASSFDLAIDIAARLHIHPTVWSLIHRMRSLRIG-PSPKTFAIVAERYASSGKPDKAVKLF 147

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
             M ++GC  D   F  +LD LCK+  V++A +LF  +R RF      +  ++ GWC   
Sbjct: 148 LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIK 207

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A  VL +M D G  P++  YN +L G+ + G++  A+E   EM+++ C+ +  +YT
Sbjct: 208 RTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYT 267

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++       +++     F EM R G    V TY   I   CK   ++    + + M+++
Sbjct: 268 TVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRK 327

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  ++       +     ELM  M   GC P+   YN++IR   +  E+++A
Sbjct: 328 GYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKA 387

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFL 464
           + ++ +M      P  D++ +++ G  
Sbjct: 388 LGLFEKMGTGDCLPNLDTYNILISGMF 414



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 99/203 (48%), Gaps = 6/203 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +++   +  +    W    EM+K   + I    +  ++  F  A  +K+   V DEM
Sbjct: 231 YNTMLQGFFRAGQIRQAWEFFLEMKKRNCE-IDVVTYTTVVHGFGVAGEIKRTRNVFDEM 289

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            + G  P    +   +  LCK  SV+ A  +F+EM R+ ++P++  +  L+ G    GK 
Sbjct: 290 IREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKF 349

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
              + ++ +M++ G EP+   YN ++  Y++  ++  A  L ++M    C PN ++Y +L
Sbjct: 350 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNIL 409

Query: 320 IQALCRMEKMEE----ANRAFVE 338
           I  +   ++ E+     N+AF +
Sbjct: 410 ISGMFVRKRSEDMVVAGNQAFAK 432



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 111/233 (47%), Gaps = 11/233 (4%)

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + ++  M    I P+  T+  +   +    + ++ V+L   M + GC  D++++N ++ +
Sbjct: 109 WSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDV 168

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRG 483
            CK   +++A  ++  +     S  T ++ V+V+G+    CLI+    A E  KEMV RG
Sbjct: 169 LCKSKRVEKAYELFRALRG-RFSADTVTYNVIVNGW----CLIKRTPKALEVLKEMVDRG 223

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +   P   T   +L    RA ++  A + +  +  + CE++V  +T  +H     G +K 
Sbjct: 224 I--NPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKR 281

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
             +   +M+   V+P   T+   ++ L K  + + A  + E++ +   E  +T
Sbjct: 282 TRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVT 334


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 205/448 (45%), Gaps = 10/448 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S  +  A +  L         +AL  +M + +  L TT  F I++R   SA    +A+E+
Sbjct: 447 SLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTT-TFNIMLRHLCSAGKPARALEL 505

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWC 254
           L +MP+    P+   +  ++   C    V+ A  +  EMRER    P+   + +++ GWC
Sbjct: 506 LRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWC 561

Query: 255 KEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           K G++ EA  V  +M   G  +P+ V+YN L+ GY   GK+  A      M  +G     
Sbjct: 562 KVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTV 621

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y +L+ AL    +  EA     EM   G   DV TY  LI+G CK   + +  EI ++
Sbjct: 622 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 681

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M +RG+    +TY  ++ A  KK +++E  +L  E  + G  PD+  YN +I      G 
Sbjct: 682 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 741

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A  +  EME   ++P   ++  ++ G    G + EA +   EM  RG+   P   T 
Sbjct: 742 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGI--QPDLVTY 799

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++       V+ A  + + ++ KG    +  +   I  L  NG   +A +   +M++
Sbjct: 800 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 859

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             + P   T+  L+ GL     R I  E
Sbjct: 860 NGITPDDSTYISLIEGLTTEDERAIDDE 887


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 228/505 (45%), Gaps = 18/505 (3%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKA 193
           H+   Y  LI    +  +     AL+ +M K   +P ++T      L+  +   + +  A
Sbjct: 43  HNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS---LLNGYCHGKRISDA 99

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           + ++D+M + G  PD   F  L+  L  ++   EA  L D M +R  +P+L  +  ++ G
Sbjct: 100 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CK G +  A  +L +M+ A  E D+V++N ++    +   + DA  L KEM  KG  PN
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y+ LI  LC   +  +A++   +M       ++VT+  LI  F K  K     ++ D
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 279

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI+R I P+  TY  ++      + L++  ++   M    C PD+  YN +I+  CK  
Sbjct: 280 DMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSK 339

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +++   ++ EM    L   T ++  ++ G    G    A + FK+MV  G+   P   T
Sbjct: 340 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV--PPDIMT 397

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              LL+ L    K+E A +V+  +     +L++Y +T  I  +   G V +       + 
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 457

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI----TFKMYKRRGERDL 608
              V P   T+  ++ G   L ++++  E    ++KM  +  +    T+    R   RD 
Sbjct: 458 LKGVKPNVVTYNTMISG---LCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514

Query: 609 KEKAKKQVDGRKRRARQRRWGGGRS 633
            + A  ++    R  R  R+ G  S
Sbjct: 515 DKAASAEL---IREMRSCRFVGDAS 536



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 203/407 (49%), Gaps = 8/407 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  L+ +++KM+KF  V +L E+M++     I+  ++   IL+  F     +  A+ +L 
Sbjct: 13  FNKLLSAIAKMKKFDLVISLGEKMQRLG---ISHNLYTYNILINCFCRRSQISLALALLG 69

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K G EP       LL+  C    + +A  L D+M E  ++P    FT+L++G     
Sbjct: 70  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  ++ +M   G +P++V Y  +++G  + G +  AF LL +M     + +   + 
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I +LC+   +++A   F EME  G   +VVTY++LIS  C   +     ++L  MI++
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 249

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +T+  ++ A  K+ +  E  +L  +M K    PD+  YN +I   C    L +A
Sbjct: 250 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 309

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++  M +    P  D++  ++ GF     + +  E F+EM  RGL+      T   L+
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV--TYTTLI 367

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             L      + A+ V+  +V+ G   ++  ++I +  L +NG +++A
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 414



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 182/390 (46%), Gaps = 12/390 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QPN V     Y  ++  L K       + L+ +M   K +     +F  ++      R V
Sbjct: 147 QPNLV----TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE-ADVVIFNTIIDSLCKYRHV 201

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  P+   +  L+  LC      +A++L  +M E+   P+L  F +L
Sbjct: 202 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 261

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGK VEA+ +   M     +PDI  YN+L++G+    ++  A ++ + M  K C
Sbjct: 262 IDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDC 321

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+ ++Y  LI+  C+ +++E+    F EM   G   D VTYTTLI G       D   +
Sbjct: 322 FPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 381

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ P+ +TY  ++       +LE+ +E+   M+K     D+  Y  +I   C
Sbjct: 382 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 441

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++ +  +++  +    + P   ++  M+ G   +  L EA    K+M   G L  P 
Sbjct: 442 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL--PD 499

Query: 490 YGTLKALLNSLLR----AQKVEMAKDVWSC 515
            GT   L+ + LR    A   E+ +++ SC
Sbjct: 500 SGTYNTLIRAHLRDGDKAASAELIREMRSC 529



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 218/458 (47%), Gaps = 10/458 (2%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVK 191
           Y  S     +L+      ++     AL+++M +   +P  IT   F  L+          
Sbjct: 76  YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT---FTTLIHGLFLHNKAS 132

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLL 250
           +A+ ++D M + GC+P+   +G +++ LCK   +  A  L ++M   + +  +  F +++
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
              CK   + +A  +  +M+  G  P++V Y++L+S     G+ +DA +LL +M  K  +
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  ++  LI A  +  K  EA +   +M +   + D+ TY +LI+GFC   ++D+  ++
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + M+ +   P+  TY  ++    K + +E+  EL  EM   G V D   Y  +I+    
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQ 489
            G+   A  V+ +M +  + P   ++ +++ G    G L +A E F  M    + L    
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
           Y T   ++  + +A KV+   D++  +  KG + NV  +   I  L S   ++EA +   
Sbjct: 433 YTT---MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 489

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            M +   +P   T+  L+R   +  ++  +AE+  ++R
Sbjct: 490 KMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 527



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 203/426 (47%), Gaps = 4/426 (0%)

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           M K +P L +   F  L+   A  +     I + ++M + G   + + +  L++  C+ S
Sbjct: 1   MVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 59

Query: 224 SVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            +  A  L  +M +  ++PS+   +SLL G+C   ++ +A  ++ QM + G+ PD + + 
Sbjct: 60  QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+ G     K ++A  L+  M ++GC PN  +Y V++  LC+   ++ A     +ME +
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
             EADVV + T+I   CK R +D    +   M  +GI PN +TY  ++          + 
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +L+ +M +    P++  +N +I    K G+  EA  + ++M   S+ P   ++  +++G
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 299

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F     L +A + F+ MV +     P   T   L+    ++++VE   +++  +  +G  
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDCF--PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 357

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            +   +T  I  LF +G    A      M+   V P   T++ L+ GL      + A E+
Sbjct: 358 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 417

Query: 583 TEKVRK 588
            + ++K
Sbjct: 418 FDYMQK 423



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     + ALI +  K  KF     L ++M  R   P + T   +  L+  F    
Sbjct: 252 NPNLV----TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFT---YNSLINGFCMHD 304

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA ++ + M    C PD   +  L+   CK+  V++  +LF EM  R        +T
Sbjct: 305 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 364

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G   +G    A+ V  QM   G  PDI+ Y+ LL G    GK+  A E+   M++ 
Sbjct: 365 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 424

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
               +   YT +I+ +C+  K+++    F  +   G + +VVTY T+ISG C  R +   
Sbjct: 425 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 484

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           Y +L  M + G LP+  TY  ++ AH +  +     EL+ EMR    V D S   +V
Sbjct: 485 YALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 541



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 34/183 (18%), Positives = 76/183 (41%), Gaps = 2/183 (1%)

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +P +  +N ++    K+ +    +++  +M+   +S    ++ ++++ F  +  +  A  
Sbjct: 7   LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
              +M+  G    P   TL +LLN     +++  A  +   +V  G   +   +T  IH 
Sbjct: 67  LLGKMMKLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           LF +    EA +    M+     P   T+  ++ GL K  +  +A  +  K+     E  
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184

Query: 595 ITF 597
           +  
Sbjct: 185 VVI 187


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 237/520 (45%), Gaps = 23/520 (4%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRY------YMWASKQPNYVHSYDVYR------ 142
           ++ SGV  R  + E +I+ C   G++G  Y      Y+ A K      ++ + R      
Sbjct: 162 VRKSGVS-RVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSV 220

Query: 143 ---ALIKSLSKMRKFGAV---WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
              A  K L  + + G V   W +  E+ +   +L       I++      R  +  +  
Sbjct: 221 SINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIEL-NVYTLNIMVNALCKDRKFENVMFF 279

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           L +M   G   D   +  L++A C+   V+EA +L +    R  +P L  + ++LYG CK
Sbjct: 280 LSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCK 339

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            GK   AK VL++M   G  P+   YN LL    +   + +A E+  EM R+G  P+  S
Sbjct: 340 IGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVS 399

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           ++ LI  L R   + +A   F EMERSG   D V YT LI GFC++  +    ++ D M+
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            RG   + +TY   +    KK+   +   L  EM + G VPD   +  +IR  CK G + 
Sbjct: 460 ARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMD 519

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+N++  M   +L P   ++  ++ GF   G +  A E + +M+ + ++  P + +   
Sbjct: 520 KALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII--PDHISYGT 577

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +LN    +  +  A ++   ++ KG   N+      I     +G + +A  Y   M+   
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           ++P   ++  L+ G  K  N + A  +  ++ K   +  I
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI 677



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 171/334 (51%), Gaps = 2/334 (0%)

Query: 159 ALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           ALM     E+  ++   V + IL+  F     +  A+++ DEM   GC  D   +   L+
Sbjct: 416 ALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLN 475

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
            LCK     +A  LF+EM ER   P    FT+L+ G+CK+G + +A  +   M     +P
Sbjct: 476 GLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKP 535

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D V YN L+ G+ + G+M  A EL  +M RK   P+  SY  ++   C    + EA    
Sbjct: 536 DKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLC 595

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +M   G   ++VT  TLI G+C+S  + + YE L  MI  GI+P+  +Y  ++  + K+
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             LE+   L+ EM K G   ++  YN+++   C  G+++EA  V  +M    ++P   ++
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATY 715

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             +++G + Q  + EA  +  EM+ RGL+   ++
Sbjct: 716 SSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDRF 749



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 139/280 (49%), Gaps = 6/280 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y   +  L K + F     L  EM  R   P   T   F  L+R +     + KA+ + +
Sbjct: 470 YNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYT---FTTLIRGYCKDGNMDKALNLFE 526

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M +   +PD+  +  L+D  CK   +  A +L+D+M R+   P    + ++L G+C  G
Sbjct: 527 AMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA  +  QM + G  P++V  N L+ GY + G M  A+E L +M   G  P++ SY 
Sbjct: 587 LLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYN 646

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    +   +E+A     EME+ G + +++TY  +++GFC   K+    ++L  MI+ 
Sbjct: 647 TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI 706

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           GI P+  TY  ++  H  ++ ++E      EM + G VPD
Sbjct: 707 GINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 120/309 (38%), Gaps = 56/309 (18%)

Query: 315 SYTVLIQALCRMEKMEEA------------------------------------------ 332
           S + ++  L R  ++ EA                                          
Sbjct: 137 SLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRT 196

Query: 333 ----------NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
                     + AF  + R G    +     L+ G  ++  +D  +EI   +++ GI  N
Sbjct: 197 YVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELN 256

Query: 383 QLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
             T L+IM+ A  K  + E  +  + +M   G   D+  YN +I   C+ G ++EA  + 
Sbjct: 257 VYT-LNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           N   +  + PG  ++  +++G    G    A +   EM+  GL   P   T   LL  + 
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGL--TPNAATYNTLLVEIC 373

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           R   +  A++++  +  +G   ++ +++  I  L  NGH+ +A  +  +M  + ++P   
Sbjct: 374 RRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNV 433

Query: 562 TFAKLMRGL 570
            +  L+ G 
Sbjct: 434 IYTILIDGF 442


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 205/448 (45%), Gaps = 10/448 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S  +  A +  L         +AL  +M + +  L TT  F I++R   SA    +A+E+
Sbjct: 452 SLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTT-TFNIMLRHLCSAGKPARALEL 510

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWC 254
           L +MP+    P+   +  ++   C    V+ A  +  EMRER    P+   + +++ GWC
Sbjct: 511 LRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWC 566

Query: 255 KEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           K G++ EA  V  +M   G  +P+ V+YN L+ GY   GK+  A      M  +G     
Sbjct: 567 KVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTV 626

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y +L+ AL    +  EA     EM   G   DV TY  LI+G CK   + +  EI ++
Sbjct: 627 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 686

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M +RG+    +TY  ++ A  KK +++E  +L  E  + G  PD+  YN +I      G 
Sbjct: 687 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 746

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A  +  EME   ++P   ++  ++ G    G + EA +   EM  RG+   P   T 
Sbjct: 747 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGI--QPDLVTY 804

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++       V+ A  + + ++ KG    +  +   I  L  NG   +A +   +M++
Sbjct: 805 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 864

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             + P   T+  L+ GL     R I  E
Sbjct: 865 NGITPDDSTYISLIEGLTTEDERAIDDE 892


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/515 (25%), Positives = 234/515 (45%), Gaps = 27/515 (5%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY-MWASKQP 132
           VEKI   LK+ +S +       ++  + L P     V+ RC +  +LG R+        P
Sbjct: 45  VEKICFSLKQGNSNV-------RNHLIRLNPLAVVEVLYRCRNDLSLGQRFVDQLGFNFP 97

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP--------QLITT--------EV 176
           N+ H+     A+I  L +  +     + +  M +            L++T         V
Sbjct: 98  NFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSV 157

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           F +L+R F  AR +++A E    +   G          L+ +L +   V+ A +++ E+ 
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEIS 217

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R     ++     ++   CK+GK+ +    L ++++ G  PDIV YN L+S Y+  G M 
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +AFEL+  M  KG  P   +Y  +I  LC+  K E A   F EM RSG   D  TY +L+
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 337

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
              CK         I   M  R ++P+ + +  +M    +   L++ +     +++ G +
Sbjct: 338 MEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 397

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD   Y ++I+  C+ G + EA+N+ NEM     +    ++  ++HG   +  L EA + 
Sbjct: 398 PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 457

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F EM  RGL   P   TL  L++   +   ++ A +++  +  K  +L+V  +   +   
Sbjct: 458 FNEMTERGLF--PDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGF 515

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              G +  A     DM+  +++P P +F+ L+  L
Sbjct: 516 GKVGDIDTAKEIWADMVSKEILPTPISFSILVNAL 550



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 212/448 (47%), Gaps = 9/448 (2%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVF 177
           L +R Y   S+    V+ Y +   ++ +L K  K   V   + E++++   P ++T   +
Sbjct: 208 LAWRIYQEISRSGVGVNVYTL-NIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVT---Y 263

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-R 236
             L+  ++S  ++++A E++  MP  G  P  + +  +++ LCK+   + A ++F EM R
Sbjct: 264 NTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR 323

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
               P    + SLL   CK+G  VE + +   M+     PD+V +++++S + + G +  
Sbjct: 324 SGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDK 383

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A      ++  G  P+   YT+LIQ  CR   + EA     EM + GC  DVVTY T++ 
Sbjct: 384 ALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILH 443

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           G CK + +    ++ + M +RG+ P+  T   ++  H K   L+  +EL  +M++     
Sbjct: 444 GLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKL 503

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           DV  YN ++    K+G++  A  +W +M +  + P   SF ++V+    +G L EA   +
Sbjct: 504 DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVW 563

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            EM+ + +   P      +++    R+      +     ++++G   +  ++   I+   
Sbjct: 564 DEMISKSI--KPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFV 621

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFA 564
              ++ +A      M +      PD F 
Sbjct: 622 KEENMSKAFGLVKKMEEKQGGLVPDVFT 649



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 160/343 (46%), Gaps = 2/343 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L+  + +  KL EA      ++  G+   I   N L+    ++G +  A+ + +E+ 
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEIS 217

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           R G   N  +  +++ ALC+  KME+      E++  G   D+VTY TLIS +     ++
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             +E++ +M  +G  P   TY  ++    K  + E   E+  EM + G  PD + Y  ++
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 337

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             ACK G+  E  N++++M +  + P    F  M+  F   G L +A  YF  +   GL+
Sbjct: 338 MEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 397

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P       L+    R   +  A ++ + ++ +GC ++V  +   +H L     + EA 
Sbjct: 398 --PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 455

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
               +M +  + P   T   L+ G  KL N Q A E+ +K+++
Sbjct: 456 KLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKE 498



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 5/236 (2%)

Query: 153 KFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           K G +   ME  +K K + I  +V  +  L+  F     +  A E+  +M      P   
Sbjct: 482 KLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPI 541

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
            F  L++ALC    + EA +++DEM  +  KP++    S++ G+C+ G   + +  L +M
Sbjct: 542 SFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKM 601

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK--GCDPNANSYTVLIQALCRME 327
              GF PD + YN L+ G+ +   M+ AF L+K+M  K  G  P+  +Y  ++   CR  
Sbjct: 602 ISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCREN 661

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           +M+EA     +M   G   D  TYT+LI+GF     +   +   D M+QRG  P+ 
Sbjct: 662 QMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDD 717



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 143/331 (43%), Gaps = 39/331 (11%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           Y  + K+   +    +Y  LI+   +         L  EM ++   +       IL    
Sbjct: 387 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTIL-HGL 445

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSL 243
              +M+ +A ++ +EM + G  PD +    L+D  CK  +++ A +LF +M+E R K  +
Sbjct: 446 CKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDV 505

Query: 244 RHFTSLLYGW-----------------------------------CKEGKLVEAKYVLVQ 268
             + +LL G+                                   C +G L EA  V  +
Sbjct: 506 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDE 565

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M     +P +++ N+++ GY + G  +D    L++M  +G  P+  SY  LI    + E 
Sbjct: 566 MISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEEN 625

Query: 329 MEEANRAFVEME--RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
           M +A     +ME  + G   DV TY +++ GFC+  ++     +L  MI+RG+ P++ TY
Sbjct: 626 MSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTY 685

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
             ++     ++ L E      EM + G  PD
Sbjct: 686 TSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 213/438 (48%), Gaps = 10/438 (2%)

Query: 135 VHSYD-VYRALIK-SLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           V SY+ V  AL++ S S  R +     +  +M +    P + T   + +++R   S   +
Sbjct: 167 VLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYT---YNVIIRGVVSQGDL 223

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSL 249
           +K +  + +M K G  P+   +  L+DA CK   VKEA  L   M       +L  + S+
Sbjct: 224 EKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSV 283

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G C +G++ E   ++ +M+  G  PD V YN L++G+ + G +     LL EM  KG 
Sbjct: 284 INGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGL 343

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +YT LI  +C+   +  A   F +M   G   +  TYTTLI GFC+   ++  Y+
Sbjct: 344 SPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYK 403

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +L  MI  G  P+ +TY  ++  +     ++E V ++  M + G  PDV +Y+ VI   C
Sbjct: 404 VLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFC 463

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           +  EL +A  +  EM    + P T ++  ++ G   Q  L+EA + F+EM+ RGL   P 
Sbjct: 464 RERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGL--PPD 521

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T  +L+N+     ++  A  +   +V +G   +   +++ I+ L      K A    L
Sbjct: 522 EVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLL 581

Query: 550 DMMDADVMPQPDTFAKLM 567
            +   + +P   T+  L+
Sbjct: 582 KLFYEESVPDDVTYNTLI 599



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 202/453 (44%), Gaps = 39/453 (8%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK-----E 227
           ++ VF ++++  +    V KA+ +L    ++G  P    +  +LDAL + SS       +
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A ++F +M R    P++  +  ++ G   +G L +    + +M+  G  P++V YN L+ 
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              +  K+ +A  LL+ M   G   N  SY  +I  LC   +M E      EM   G   
Sbjct: 251 ASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVP 310

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D VTY TL++GFCK   + +   +L  M+ +G+ PN +TY  ++    K   L   VE+ 
Sbjct: 311 DEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIF 370

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +MR  G  P+   Y  +I   C+ G + EA  V +EM  +  SP   ++  +VHG+   
Sbjct: 371 DQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFL 430

Query: 467 GCLIEACEYFKEMVGRGLLS---------------------------------APQYGTL 493
           G + EA    + MV RGL                                    P   T 
Sbjct: 431 GRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTY 490

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            +L+  L   QK+  A D++  ++ +G   +   +T  I++   +G + +A     +M+ 
Sbjct: 491 SSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQ 550

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              +P   T++ L+ GL K    ++A  +  K+
Sbjct: 551 RGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 201/435 (46%), Gaps = 72/435 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    K         L+ EM  +   P ++T   +  L+     A  + +A+E+ D
Sbjct: 315 YNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVT---YTTLINCMCKAGNLSRAVEIFD 371

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M   G  P+E  +  L+D  C+   + EA K+  EM    F PS+  + +L++G+C  G
Sbjct: 372 QMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLG 431

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  +L  M + G  PD+V Y+ +++G+ +  ++  AF++ +EM  KG  P+  +Y+
Sbjct: 432 RVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYS 491

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LIQ LC  +K+ EA   F EM R G   D VTYT+LI+ +C   ++ +   + D M+QR
Sbjct: 492 SLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQR 551

Query: 378 GILPNQLTYLHIMLAHEKK---------------EE-----------LEEC-------VE 404
           G LP+ +TY  ++    KK               EE           +E C       VE
Sbjct: 552 GFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVE 611

Query: 405 ----------LMGEMRKI-------GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
                     LM E  ++          P+ + YN++I    + G + +A N++ E+E +
Sbjct: 612 GLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHS 671

Query: 448 SLSPGTDSFVVMVHGFLGQGC----------LIEACEYFKEMVGRGLLSAP-QYGTLKAL 496
           S +  T + + +V     +G           ++ +C      V + L+    + G + A+
Sbjct: 672 SFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAV 731

Query: 497 LNSLLRAQKVEMAKD 511
           LN L      EMAKD
Sbjct: 732 LNVL-----TEMAKD 741



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 17/293 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I    + R+ G  + + EEM  EK  L  T  +  L++     + + +A ++  EM
Sbjct: 455 YSTVIAGFCRERELGKAFQMKEEM-VEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREM 513

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + G  PDE  +  L++A C +  + +A +L DEM +R F P    ++ L+ G  K+ + 
Sbjct: 514 MRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKART 573

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLS---------------GYAQMGKMTDAFELLKEM 304
             AK +L+++      PD V YN L+                G+   G M +A  + K M
Sbjct: 574 KVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTM 633

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            ++   PNA  Y ++I    R   + +A   ++E+E S      V    L+    +    
Sbjct: 634 LQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMN 693

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           D    +L ++++   L +      ++  + K+  ++  + ++ EM K G +PD
Sbjct: 694 DELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 194/383 (50%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE--VFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G + A ++ +++   +L+     ++ +++     A++V  A ++  
Sbjct: 169 YGTLINGLCKV---GRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYS 225

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           +M      PD F +  L+      S +  A  LF++M+ E   P++  F  L+ G+CKEG
Sbjct: 226 QMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEG 285

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ +AK VL  M     +PD+V YN+L+ GY  + K+  A ++   M   G   N   YT
Sbjct: 286 KVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYT 345

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++   C+++ ++EA   F EM       +VVTY++LI G CK  +I    +++D M  R
Sbjct: 346 TMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDR 405

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +TY  I+ A  K   +++ + L+  ++  G  PD+  Y ++I+  C+ G L++A
Sbjct: 406 GQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDA 465

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            NV+ ++     +    ++ VM+ GF  +G   +A     +M   G +  P   T + ++
Sbjct: 466 QNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCI--PNAKTYELVI 523

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            SL    + + A+ +   ++ +G
Sbjct: 524 LSLFEKDENDTAEKLLREMIVRG 546



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 206/433 (47%), Gaps = 8/433 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI   S++      +++  ++ K+   P  IT   F  L++       + +A+   D
Sbjct: 99  FNILINCFSQLGLNSLSFSIFAKILKKGYHPTAIT---FNTLIKGLCLKGHIHQALHFHD 155

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           ++   G   D+  +G L++ LCK   +  A +L   +  +  +P+   +  ++   CK  
Sbjct: 156 KVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAK 215

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  +  QM      PD+  YN L+SG++ + K+  A +L  +M+++  +PN  ++ 
Sbjct: 216 LVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFN 275

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+   C+  K+ +A      M +   + DVVTY +L+ G+C   K+++  +I DSM   
Sbjct: 276 ILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASG 335

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G++ N   Y  ++    K + ++E + L  EMR    +P+V  Y+ +I   CKLG +  A
Sbjct: 336 GVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYA 395

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + + +EM      P   ++  ++        + +A      +  +G+   P   T   L+
Sbjct: 396 LKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGI--RPDMYTYTILI 453

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L ++ ++E A++V+  ++ KG  L+VYA+T+ I      G   +A +    M D   +
Sbjct: 454 KGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCI 513

Query: 558 PQPDTFAKLMRGL 570
           P   T+  ++  L
Sbjct: 514 PNAKTYELVILSL 526



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 190/392 (48%), Gaps = 3/392 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRER 238
           ++     A+    A+ +  +M   G E D F F  L++   +      +  +F + +++ 
Sbjct: 67  ILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKG 126

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           + P+   F +L+ G C +G + +A +   ++   GF  D V Y  L++G  ++G++T A 
Sbjct: 127 YHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAAL 186

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +LLK +  K   PNA  Y ++I  +C+ + + +A   + +M       DV TY  LISGF
Sbjct: 187 QLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGF 246

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
               K++   ++ + M +  I PN  T+  ++    K+ ++ +   ++  M K    PDV
Sbjct: 247 SAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDV 306

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN ++   C + ++ +A ++++ M +  +      +  MV+GF     + EA   F+E
Sbjct: 307 VTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEE 366

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  R ++  P   T  +L++ L +  ++  A  +   +  +G   N+  ++  + +L  N
Sbjct: 367 MRCRKII--PNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKN 424

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            HV +A +   ++ D  + P   T+  L++GL
Sbjct: 425 HHVDKAIALLTNLKDQGIRPDMYTYTILIKGL 456



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 2/241 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +L+     + K      + + M      +   +++  ++  F   +MV +AI + +EM
Sbjct: 309 YNSLMDGYCSINKVNKAKDIFDSM-ASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEM 367

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKL 259
                 P+   +  L+D LCK   +  A KL DEM +R +P ++  ++S+L   CK   +
Sbjct: 368 RCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHV 427

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L  +KD G  PD+  Y  L+ G  Q G++ DA  + +++  KG + +  +YTV+
Sbjct: 428 DKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVM 487

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           IQ  C     ++A     +ME +GC  +  TY  +I    +  + D   ++L  MI RG+
Sbjct: 488 IQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547

Query: 380 L 380
           L
Sbjct: 548 L 548



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 154/370 (41%), Gaps = 39/370 (10%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F  S+R F+ L +   +E  L+ +   L+  K+    P    +N +LS   +    + A 
Sbjct: 24  FPSSIRLFSQLHHKQDEENNLISSFNHLLLHKNP--TPPTFQFNKILSSLVKAKHHSTAL 81

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L ++M   G + +  ++ +LI    ++     +   F ++ + G     +T+ TLI G 
Sbjct: 82  SLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGL 141

Query: 359 CKSRKIDRCYEILDSMIQRG-----------------------------------ILPNQ 383
           C    I +     D ++ +G                                   + PN 
Sbjct: 142 CLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNA 201

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           + Y  I+    K + + +  +L  +M      PDV  YN +I     + +L  A++++N+
Sbjct: 202 VMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNK 261

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M+  +++P   +F ++V GF  +G + +A      M+   +   P   T  +L++     
Sbjct: 262 MKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDI--KPDVVTYNSLMDGYCSI 319

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            KV  AKD++  + + G   NV  +T  ++       V EA +   +M    ++P   T+
Sbjct: 320 NKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTY 379

Query: 564 AKLMRGLKKL 573
           + L+ GL KL
Sbjct: 380 SSLIDGLCKL 389


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 237/520 (45%), Gaps = 23/520 (4%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRY------YMWASKQPNYVHSYDVYR------ 142
           ++ SGV  R  + E +I+ C   G++G  Y      Y+ A K      ++ + R      
Sbjct: 162 VRKSGVS-RVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSV 220

Query: 143 ---ALIKSLSKMRKFGAV---WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
              A  K L  + + G V   W +  E+ +   +L       I++      R  +  +  
Sbjct: 221 SINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIEL-NVYTLNIMVNALCKDRKFENVMFF 279

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           L +M   G   D   +  L++A C+   V+EA +L +    R  +P L  + ++LYG CK
Sbjct: 280 LSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCK 339

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            GK   AK VL++M   G  P+   YN LL    +   + +A E+  EM R+G  P+  S
Sbjct: 340 IGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVS 399

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           ++ LI  L R   + +A   F EMERSG   D V YT LI GFC++  +    ++ D M+
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            RG   + +TY   +    KK+   +   L  EM + G VPD   +  +IR  CK G + 
Sbjct: 460 ARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMD 519

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+N++  M   +L P   ++  ++ GF   G +  A E + +M+ + ++  P + +   
Sbjct: 520 KALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII--PDHISYGT 577

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +LN    +  +  A ++   ++ KG   N+      I     +G + +A  Y   M+   
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           ++P   ++  L+ G  K  N + A  +  ++ K   +  I
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI 677



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 171/334 (51%), Gaps = 2/334 (0%)

Query: 159 ALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           ALM     E+  ++   V + IL+  F     +  A+++ DEM   GC  D   +   L+
Sbjct: 416 ALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLN 475

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
            LCK     +A  LF+EM ER   P    FT+L+ G+CK+G + +A  +   M     +P
Sbjct: 476 GLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKP 535

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D V YN L+ G+ + G+M  A EL  +M RK   P+  SY  ++   C    + EA    
Sbjct: 536 DKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLC 595

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +M   G   ++VT  TLI G+C+S  + + YE L  MI  GI+P+  +Y  ++  + K+
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             LE+   L+ EM K G   ++  YN+++   C  G+++EA  V  +M    ++P   ++
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATY 715

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             +++G + Q  + EA  +  EM+ RGL+   ++
Sbjct: 716 SSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDRF 749



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 139/280 (49%), Gaps = 6/280 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y   +  L K + F     L  EM  R   P   T   F  L+R +     + KA+ + +
Sbjct: 470 YNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYT---FTTLIRGYCKDGNMDKALNLFE 526

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M +   +PD+  +  L+D  CK   +  A +L+D+M R+   P    + ++L G+C  G
Sbjct: 527 AMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA  +  QM + G  P++V  N L+ GY + G M  A+E L +M   G  P++ SY 
Sbjct: 587 LLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYN 646

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    +   +E+A     EME+ G + +++TY  +++GFC   K+    ++L  MI+ 
Sbjct: 647 TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI 706

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           GI P+  TY  ++  H  ++ ++E      EM + G VPD
Sbjct: 707 GINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 56/312 (17%)

Query: 312 NANSYTVLIQALCRMEKMEEA--------------------------------------- 332
           ++ S + ++  L R  ++ EA                                       
Sbjct: 134 SSXSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLL 193

Query: 333 -------------NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                        + AF  + R G    +     L+ G  ++  +D  +EI   +++ GI
Sbjct: 194 VRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGI 253

Query: 380 LPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             N  T L+IM+ A  K  + E  +  + +M   G   D+  YN +I   C+ G ++EA 
Sbjct: 254 ELNVYT-LNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAF 312

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + N   +  + PG  ++  +++G    G    A +   EM+  GL   P   T   LL 
Sbjct: 313 QLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGL--TPNAATYNTLLV 370

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            + R   +  A++++  +  +G   ++ +++  I  L  NGH+ +A  +  +M  + ++P
Sbjct: 371 EICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVP 430

Query: 559 QPDTFAKLMRGL 570
               +  L+ G 
Sbjct: 431 DNVIYTILIDGF 442


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 231/472 (48%), Gaps = 32/472 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI   SK          ++EM ++  +P ++T   +  L+  +  A+ V  A E+ +
Sbjct: 527 YTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVT---YTTLIHAYLKAKKVSVANELFE 583

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-----------------KP 241
            M   GC P+   +  L+D  CK+ ++++A +++  MR                    KP
Sbjct: 584 LMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKP 643

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  + +L+ G CK  K+ +A+ +L  M   G EP+ +VY+ L+ G+ +  K+ +A E+ 
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            +M   G +PN  +Y+ LI  L + ++++   +   +M  + C  ++V YT +I G  K 
Sbjct: 704 HKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            K D  Y+++  M ++G  PN +TY  ++    K  ++++C+EL  EM   GC P+   Y
Sbjct: 764 AKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            V+I   C  G L EA  +  EM+         S+  ++ G+  +   I +    +E+  
Sbjct: 824 TVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKRE--FILSLGLLEEVEK 881

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMA----KDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            G  SAP     K L+++ ++A ++E+A    K+V S  ++   + N+Y  T  I+S   
Sbjct: 882 NG--SAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLY--TSLIYSFSY 937

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
              +  A     DM+   V+P   TF  L+ GL ++   + A ++++ + +M
Sbjct: 938 ASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQM 989



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 193/423 (45%), Gaps = 31/423 (7%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS------SVKEAA 229
           +F  L+  +  +     A ++L +M K  C+P   V+  L+ ++C         + + A 
Sbjct: 380 IFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAE 439

Query: 230 KLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           K ++EM        K ++  F   L G+   GK  +A  V+ +M   GF PD   Y+ ++
Sbjct: 440 KAYNEMLSAGTVLNKVNVVSFARCLCGF---GKFEKAYKVIHEMMGNGFVPDTSTYSEVI 496

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
                  ++ +AF L KEM+  G  P+  +YT+LI    +   +++A+    EM R GCE
Sbjct: 497 GFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCE 556

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             VVTYTTLI  + K++K+    E+ + MI +G  PN +TY  ++  + K   +E+  ++
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 406 MGEMRKIGCVPDVSNY-----------NVVIRLA-----CKLGELKEAVNVWNEMEAASL 449
              MR    +PDV  Y           NVV   A     CK  ++K+A ++   M     
Sbjct: 617 YARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P T  +  ++ GF     L EA E F +MV  G    P   T  +L++ L + +++++ 
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGY--NPNVYTYSSLIDRLFKDKRLDLV 734

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             V S ++   C  N+  +T  I  L       EA    L M +    P   T+  ++ G
Sbjct: 735 LKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDG 794

Query: 570 LKK 572
             K
Sbjct: 795 FGK 797



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 128/560 (22%), Positives = 233/560 (41%), Gaps = 50/560 (8%)

Query: 48  LKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
           L +  D C  + T  T    NE    ++ +      F     K  + L+     L P L 
Sbjct: 85  LDSHADSCSSHRTLQTVKISNEAFLILDAVRNCDDGFGE---KTHIVLRQFRQKLNPDLV 141

Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
             +++    +  L  ++++WA +Q  Y H+  VY AL+    +          + E+R +
Sbjct: 142 VEILSFL-KSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGD 200

Query: 168 KPQLI----------------------------------TTEVFVILMRRFASARMVKKA 193
             +++                                  T   +  L++ F  A  +  A
Sbjct: 201 DKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTA 260

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253
             V  EM + G   DEF  G    ALCK    +EA  L +  +E F P+   +  ++ G 
Sbjct: 261 QLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIE--KEDFVPNTILYNKMISGL 318

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+     EA   L +M+     P++  Y  LL G     ++     +L  M  +GC P+ 
Sbjct: 319 CEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSY 378

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR--CYEI- 370
             +  L+ A C+ +    A +   +ME+  C+   V Y  LI   C   ++     +E+ 
Sbjct: 379 TIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELA 438

Query: 371 ---LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
               + M+  G + N++  +          + E+  +++ EM   G VPD S Y+ VI  
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGF 498

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C    ++ A  ++ EM+   + P   ++ +++  F   G + +A  +  EMV  G    
Sbjct: 499 LCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG--CE 556

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L+++ L+A+KV +A +++  ++ KGC  NV  +T  I     +G++++AC  
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 548 CLDMM-DADVMPQPDTFAKL 566
              M  DAD+ P  D + K+
Sbjct: 617 YARMRGDADI-PDVDMYFKI 635



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           S  PN V    +Y  +I  LSK+ K    + LM  M ++  KP ++T   +  ++  F  
Sbjct: 745 SCAPNIV----IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT---YTAMIDGFGK 797

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF 246
           A  V K +E+  EM   GC P+   +  L++  C    + EA  L +EM++ + P  +H 
Sbjct: 798 AGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWP--KHV 855

Query: 247 TSLLYGWCK--EG---KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           +S    +CK  EG   + + +  +L +++  G  P I++Y  L+  + + G++  A EL 
Sbjct: 856 SS----YCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELH 911

Query: 302 KEMRRKGCDPNA--NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           KE+        A  N YT LI +     K+  A   F +M R G   D+ T+  L+ G  
Sbjct: 912 KEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLI 971

Query: 360 KSRKIDRCYEILDSMIQRGI 379
           + R+ +   ++ DS+ Q  I
Sbjct: 972 RVRRWEEALQLSDSLCQMDI 991


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 196/394 (49%), Gaps = 3/394 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++  FA  +    A+ +   +   G +PD      L++  C    +     +  ++ +R 
Sbjct: 65  ILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           ++P    FT+L+ G C +G++ +A +   ++   G + D V Y  L++G  ++G    A 
Sbjct: 125 YQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAI 184

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +L++++  +   PN   Y  +I ALC+ + + EA   F EM   G  ADVVTYTTLI GF
Sbjct: 185 KLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGF 244

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C + K+     +L+ M+ + I PN  TY  ++ A  K+ +++E   ++  M K    PDV
Sbjct: 245 CIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDV 304

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y+ ++     + ELK+A +V+N M    ++P   S+ ++++GF     + EA   FKE
Sbjct: 305 ITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKE 364

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  + ++  P   T  +L++ L ++ ++    D+   +  +G   NV  +   I  L  N
Sbjct: 365 MHQKNMV--PGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKN 422

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           GH+  A +    M D  + P   TF  L+ GL K
Sbjct: 423 GHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCK 456



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 200/409 (48%), Gaps = 6/409 (1%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R  +P  IT   F  L++       V KA+   D++   G + D+  +G L++ +CK   
Sbjct: 123 RGYQPHTIT---FTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGD 179

Query: 225 VKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
            + A KL  ++  R  KP++  + +++   CK   + EA  +  +M   G   D+V Y  
Sbjct: 180 TRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTT 239

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+ G+    K+ +A  LL EM  K  +PN  +Y +L+ ALC+  K++EA      M ++ 
Sbjct: 240 LIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKAC 299

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            + DV+TY+TL+ G+    ++ +   + ++M   G+ P+  +Y  ++    K + ++E +
Sbjct: 300 VKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEAL 359

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L  EM +   VP +  Y+ +I   CK G +    ++ +EM    +     ++  ++ G 
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGL 419

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G L  A   F +M  +G+   P   T   LL+ L +  +++ A++ +  ++TKG  L
Sbjct: 420 CKNGHLDRAIALFNKMKDQGI--RPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHL 477

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +VY + + I+     G ++EA +    M +   +P   TF  ++  L K
Sbjct: 478 DVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFK 526



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 184/383 (48%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  + K+        L+ ++  R  KP +   E++  ++      ++V +A  +  
Sbjct: 167 YGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNV---EMYNTIIDALCKYQLVSEAYGLFS 223

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G   D   +  L+   C  S +KEA  L +EM  +   P++  +  L+   CKEG
Sbjct: 224 EMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK VL  M  A  +PD++ Y+ L+ GY  + ++  A  +   M   G  P+ +SYT
Sbjct: 284 KVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYT 343

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+ + ++EA   F EM +      +VTY++LI G CKS +I   ++++D M  R
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N +TY  ++    K   L+  + L  +M+  G  P    + +++   CK G LK+A
Sbjct: 404 GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDA 463

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              + ++           + VM++G   QG L EA     +M   G    P   T   ++
Sbjct: 464 QEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENG--CVPNAVTFDIII 521

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
           N+L +  + + A+ +   ++ +G
Sbjct: 522 NALFKKDENDKAEKLLRQMICRG 544



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 177/350 (50%), Gaps = 6/350 (1%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEV 196
           ++Y  +I +L K +     + L  EM  +    I+ +V  +  L+  F  A  +K+AI +
Sbjct: 200 EMYNTIIDALCKYQLVSEAYGLFSEMTAKG---ISADVVTYTTLIYGFCIASKLKEAIGL 256

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L+EM      P+ + +  L+DALCK   VKEA  +   M +   KP +  +++L+ G+  
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFL 316

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             +L +A++V   M   G  PD+  Y  L++G+ +   + +A  L KEM +K   P   +
Sbjct: 317 VYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVT 376

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y+ LI  LC+  ++        EM   G  A+V+TY +LI G CK+  +DR   + + M 
Sbjct: 377 YSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMK 436

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +GI P   T+  ++    K   L++  E   ++   G   DV  YNV+I   CK G L+
Sbjct: 437 DQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLE 496

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           EA+ + ++ME     P   +F ++++    +    +A +  ++M+ RGLL
Sbjct: 497 EALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 138/320 (43%), Gaps = 37/320 (11%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I+ +N +L  +A++   + A  L   +  KG  P+  +  +LI   C M ++      
Sbjct: 57  PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G +   +T+TTLI G C   ++++     D ++ +GI  +Q++Y  ++    K
Sbjct: 117 LAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCK 176

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +    ++L+ ++      P+V  YN +I   CK   + EA  +++EM A  +S    +
Sbjct: 177 IGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVT 236

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +++GF    C+       KE +G              LLN +               
Sbjct: 237 YTTLIYGF----CIASK---LKEAIG--------------LLNEM--------------- 260

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
            V K    NVY + I + +L   G VKEA +    M+ A V P   T++ LM G   +Y 
Sbjct: 261 -VLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 576 RQIAAEITEKVRKMAAERQI 595
            + A  +   +  M     +
Sbjct: 320 LKKAQHVFNAMSLMGVTPDV 339



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 37/210 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q N V     Y +LI  L K  +   VW L++EMR                         
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR----------------------- 403

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
                        G   +   +  L+D LCKN  +  A  LF++M+++  +P    FT L
Sbjct: 404 -------------GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTIL 450

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L G CK G+L +A+     +   G+  D+  YN +++G+ + G + +A  +L +M   GC
Sbjct: 451 LDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGC 510

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            PNA ++ ++I AL + ++ ++A +   +M
Sbjct: 511 VPNAVTFDIIINALFKKDENDKAEKLLRQM 540


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 200/414 (48%), Gaps = 7/414 (1%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCG-DAGNLG--YRYYMWAS 129
           DV+K+F IL    S   +L+ +L+ SGV L   + ++V+ R     GN      ++ +  
Sbjct: 33  DVQKVFGILSS-TSTPEQLKQSLKSSGVFLSNDVIDQVLKRVRFSHGNPSQTLEFFRYTG 91

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           ++  + HS      ++  L + R FG VW L+ E R++    IT    ++++ R A    
Sbjct: 92  RRKGFYHSSFSLDTMLYILGRSRMFGQVWELLIEARRKDQTAITARTVMVVLGRIAKVCS 151

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V++ +E   +  K   E D   F  LL  LC+  S+ +A  ++  ++ RF+P+L+ F  L
Sbjct: 152 VRQTVESFRKFRKLVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHRFRPNLQTFNIL 211

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L GW       +A     +MK+ G  PD+V YN+L+  Y +  ++  A+++L EMR +  
Sbjct: 212 LSGWKTPE---DADLFFKEMKEMGVTPDVVTYNSLMDVYCKGREIEKAYKMLDEMRDQDF 268

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +YT +I  L  + + ++A     EM+  GC  D   Y   I  FC ++++   + 
Sbjct: 269 SPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDAHG 328

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +++ M+ +G+ PN  TY           +L+    +   M   GC+P+  +   +IRL  
Sbjct: 329 LVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEGCLPNTQSCMFLIRLFR 388

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +  +++ A+  W +M        T    V+       G L EA + F EMV +G
Sbjct: 389 RHEKVEMALQFWGDMVEKGFGSYTLVSDVLFDLLCDMGKLEEAEKCFLEMVEKG 442



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 141/342 (41%), Gaps = 44/342 (12%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           +L   A++  +    E  ++ R+   + + N +  L++ LC+ + M +A   +  ++   
Sbjct: 142 VLGRIAKVCSVRQTVESFRKFRKLVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHR- 200

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++ T+  L+SG+      D  ++ +  M   G+ P+ +TY  +M  + K  E+E+  
Sbjct: 201 FRPNLQTFNILLSGWKTPEDADLFFKEMKEM---GVTPDVVTYNSLMDVYCKGREIEKAY 257

Query: 404 ELMGEMR-----------------------------------KIGCVPDVSNYNVVIRLA 428
           +++ EMR                                   + GC PD + YN  IR  
Sbjct: 258 KMLDEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAIRNF 317

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C    L +A  +  EM    LSP   ++ +    F     L  +   ++ M+  G L  P
Sbjct: 318 CIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEGCL--P 375

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              +   L+    R +KVEMA   W  +V KG         +    L   G ++EA    
Sbjct: 376 NTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFGSYTLVSDVLFDLLCDMGKLEEAEKCF 435

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           L+M++    P   +F ++ + L +L NR  A  +   ++KMA
Sbjct: 436 LEMVEKGQKPSHVSFRRI-KVLMELANRHEA--LQSLMQKMA 474


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 211/450 (46%), Gaps = 20/450 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFV--------------ILMRRF 184
           Y  +I  L K  +    + L  EM  +   P ++T    +              +L + F
Sbjct: 142 YNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMF 201

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSL 243
              ++ ++A+ +L +M   G +PD   +  L+D  CK     EA  +FD M  R + P  
Sbjct: 202 DKGQL-EEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDA 260

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             + +LL+G+  +G LV+   +L  M   G   +  V+N L+  YA+   +  A     E
Sbjct: 261 YTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIE 320

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR+KG  PN  +YT +I  LC+  ++E+A   F +M   G   D++T+T+LI G C   +
Sbjct: 321 MRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGE 380

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
             +  ++   MI RGI PN +    IM +  K+  + E  +   ++  +G  PDV +Y +
Sbjct: 381 WKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTI 440

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   C  G++ E++ +   M +  L P   ++  +++G+   G + +A   ++EM  + 
Sbjct: 441 LIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKD 500

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +   P   T   +L+ L  A +V  A++ +  IV  G +L +  + I +  L  N  V E
Sbjct: 501 V--KPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDE 558

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           A      +   +   +  TF  ++ GL K+
Sbjct: 559 ALRMFQGLRSKEFQLEVRTFNIMIVGLLKV 588



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 194/409 (47%), Gaps = 36/409 (8%)

Query: 193 AIEVLDEMPKYGCE---PDEFVFGCLLDALC-----------KNSSVKEAAKLFDEMRER 238
           A+ + + M + G      D   FG L+   C           ++   + A  +  +    
Sbjct: 75  AVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYN 134

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG----------- 287
             P++  +  ++ G  KEG++ +A  +  +M   GF P+IV YN+++ G           
Sbjct: 135 CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE 194

Query: 288 --YAQM---GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
               QM   G++ +A  LLK+M   G  P+  +Y++LI   C++ +  EA   F  M R 
Sbjct: 195 AVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRR 254

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D  TY TL+ G+     +   +++L  MIQ GI      +  ++ A+ K E L++ 
Sbjct: 255 GQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKA 314

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           +    EMR+ G  P+V  Y  VI + CK G +++AV+ +++M +  LSP   +F  ++HG
Sbjct: 315 MTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHG 374

Query: 463 F--LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
              +G+   +E   +  EM+ RG+   P    L  +++SL +  +V  A D +  I+  G
Sbjct: 375 LCTIGEWKKVEKLSF--EMINRGI--HPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVG 430

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            + +V ++TI I     +G + E+      M+   + P   T++ L+ G
Sbjct: 431 VKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNG 479



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 165/367 (44%), Gaps = 45/367 (12%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y  +I  L K  +     +   +M  E   P +IT   F  L+    +   
Sbjct: 328 PNVV----TYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIIT---FTSLIHGLCTIGE 380

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            KK  ++  EM   G  P+      ++D+LCK   V EA   FD++     KP +  +T 
Sbjct: 381 WKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTI 440

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C +GK+ E+  +L +M   G  PD V Y+ LL+GY + G++ DA  L +EM  K 
Sbjct: 441 LIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKD 500

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID--- 365
             PNA +Y +++  L    ++  A   ++++  SG +  + TY  ++ G C++  +D   
Sbjct: 501 VKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEAL 560

Query: 366 ---------------RCYEIL-----------------DSMIQRGILPNQLTYLHIMLAH 393
                          R + I+                  +++  G++P+ + Y  ++ +H
Sbjct: 561 RMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSH 620

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            ++  LEE  EL   M K GC  +    N ++R   + G+++ A     +++    S   
Sbjct: 621 IEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDEKEYSVEA 680

Query: 454 DSFVVMV 460
            + V+++
Sbjct: 681 STAVLLI 687



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 196/439 (44%), Gaps = 52/439 (11%)

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ 170
           I RC +A N+ +   +   + P+   +Y  YR L+   +       +  L+  M ++   
Sbjct: 238 IGRCTEARNI-FDSMVRRGQNPD---AY-TYRTLLHGYATKGALVDMHDLLALMIQDGIP 292

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           L    VF IL+R +A    + KA+    EM + G  P+   +  ++D LCK   V++A  
Sbjct: 293 L-EDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVS 351

Query: 231 LFDEM-RERFKPSLRHFTSLLYG------W-----------------------------C 254
            F +M  E   P +  FTSL++G      W                             C
Sbjct: 352 HFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLC 411

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           KEG+++EA     Q+   G +PD+V Y  L+ GY   GKM ++ +LL  M   G  P+  
Sbjct: 412 KEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNV 471

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE----I 370
           +Y+ L+   C+  ++++A   + EM     + + +TY  ++ G   + ++    E    I
Sbjct: 472 TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKI 531

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +DS IQ GI     TY  ++    +   ++E + +   +R      +V  +N++I    K
Sbjct: 532 VDSGIQLGI----NTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLK 587

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G + +A ++++ +  + L P    + +M+   + +G L E+ E F  M   G  +  + 
Sbjct: 588 VGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSR- 646

Query: 491 GTLKALLNSLLRAQKVEMA 509
            TL A++  LL    V  A
Sbjct: 647 -TLNAIVRKLLEKGDVRRA 664



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 21/262 (8%)

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C PN  SY ++I  L +  ++++A   F EM   G   ++VTY ++I G CK++ +D+  
Sbjct: 135 CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE 194

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  M  +G                   +LEE V L+ +M   G  PDV  Y+++I   
Sbjct: 195 AVLQQMFDKG-------------------QLEEAVRLLKKMSGGGLQPDVVTYSLLIDYY 235

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK+G   EA N+++ M     +P   ++  ++HG+  +G L++  +    M+  G+    
Sbjct: 236 CKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGI--PL 293

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
           +      L+ +  + + ++ A   +  +  KG   NV  +T  I  L   G V++A S+ 
Sbjct: 294 EDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHF 353

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
             M+   + P   TF  L+ GL
Sbjct: 354 SQMVSEGLSPDIITFTSLIHGL 375



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 6/219 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y AL+    K  +     AL  EM  +  KP  IT  +  IL   F + R+V  A E   
Sbjct: 473 YSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNI--ILHGLFHAGRVVA-AREFYM 529

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++   G +     +  +L  LC+NS V EA ++F  +R + F+  +R F  ++ G  K G
Sbjct: 530 KIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVG 589

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +AK +   +  +G  PD ++Y  ++  + + G + ++ EL   M + GC  N+ +  
Sbjct: 590 RIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLN 649

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
            +++ L     +  A     +++      +  T   LIS
Sbjct: 650 AIVRKLLEKGDVRRAGTYLTKIDEKEYSVEASTAVLLIS 688


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 175/322 (54%), Gaps = 3/322 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L+  F     V  A+ ++D+M + G  PD   +  ++D+LCK   V +A   F E+ R+ 
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKG 220

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T+L+ G C  G+  +A  +L  M      P+++ Y+ LL  + + GK+ +A 
Sbjct: 221 IRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+ +EM R   DP+  +Y+ LI  LC  ++++EAN+ F  M   GC  DVV+Y TLI+GF
Sbjct: 281 EIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGF 340

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK+++++   ++   M QRG++ N +TY  ++    +  ++++  E   +M   G  PD+
Sbjct: 341 CKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDI 400

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN+++   C  G L++A+ ++ +M+ + +     ++  ++ G    G + +A   F  
Sbjct: 401 WTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCS 460

Query: 479 MVGRGLLSAPQYGTLKALLNSL 500
           +  +GL   P   T   +++ L
Sbjct: 461 LSLKGL--KPDIVTYTTMMSGL 480



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 220/428 (51%), Gaps = 15/428 (3%)

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR--KEKPQLIT 173
           DA NL +R  +     P+ V     +  L+ ++ KM+K+  V +L ++M     +  L T
Sbjct: 68  DAINL-FREMVKTRPFPSIVD----FNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYT 122

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
              F I++  F     V  A+ VL +M K G EPD    G L++  C+ + V +A  L D
Sbjct: 123 ---FNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 234 EMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           +M E  ++P +  + +++   CK  ++ +A     ++   G  P++V Y  L++G    G
Sbjct: 180 KMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSG 239

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  DA  LL++M ++   PN  +Y+ L+ A  +  K+ EA   F EM R   + D+VTY+
Sbjct: 240 RWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +LI+G C   +ID   ++ D M+ +G  P+ ++Y  ++    K + +E+ ++L  +M + 
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQR 359

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G V +   YN +I+   ++G++ +A   +++M++  +SP   ++ +++ G    G L +A
Sbjct: 360 GLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKA 419

Query: 473 CEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
              F++M    + L    Y T   ++  + +  KVE A  ++  +  KG + ++  +T  
Sbjct: 420 LVIFEDMQKSEMDLDIVTYTT---VIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTM 476

Query: 532 IHSLFSNG 539
           +  L + G
Sbjct: 477 MSGLCTKG 484



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 189/385 (49%), Gaps = 11/385 (2%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           AI +  EM K    P    F  LL A+ K         L  +M     +  L  F  ++ 
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +C   ++  A  VL +M   G+EPD V   +L++G+ +  +++DA  L+ +M   G  P
Sbjct: 129 CFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRP 188

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +Y  +I +LC+  ++ +A   F E+ R G   +VVTYT L++G C S + +    +L
Sbjct: 189 DIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLL 248

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             MI+R I PN +TY  ++ A  K  ++ E  E+  EM ++   PD+  Y+ +I   C  
Sbjct: 249 RDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLH 308

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             + EA  +++ M +    P   S+  +++GF     + +  + F++M  RGL++     
Sbjct: 309 DRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTV-- 366

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   L+    +   V+ A++ +S + + G   +++ + I +  L  NG +++A     DM
Sbjct: 367 TYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDM 426

Query: 552 ----MDADVMPQPDTFAKLMRGLKK 572
               MD D++    T+  +++G+ K
Sbjct: 427 QKSEMDLDIV----TYTTVIQGMCK 447



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 177/382 (46%), Gaps = 31/382 (8%)

Query: 112 NRCGDAGNL-------GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           NR  DA +L       GYR        P+ V     Y A+I SL K R+        +E+
Sbjct: 169 NRVSDAVSLVDKMVEIGYR--------PDIV----AYNAIIDSLCKTRRVNDALDFFKEI 216

Query: 165 RKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            ++  +P ++T   +  L+    ++     A  +L +M K    P+   +  LLDA  KN
Sbjct: 217 GRKGIRPNVVT---YTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKN 273

Query: 223 SSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
             V EA ++F+EM R    P +  ++SL+ G C   ++ EA  +   M   G  PD+V Y
Sbjct: 274 GKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSY 333

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L++G+ +  ++ D  +L ++M ++G   N  +Y  LIQ   ++  +++A   F +M+ 
Sbjct: 334 NTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDS 393

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   D+ TY  L+ G C +  +++   I + M +  +  + +TY  ++    K  ++E+
Sbjct: 394 FGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVED 453

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L   +   G  PD+  Y  ++   C  G   E   ++ +M+   L    DS +    
Sbjct: 454 AWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMK-NDSMLC--- 509

Query: 462 GFLGQGCLIEACEYFKEMVGRG 483
             LG G +  + E  K+M+  G
Sbjct: 510 --LGDGDITISAELIKKMLSCG 529



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 134/280 (47%), Gaps = 2/280 (0%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K+ DA  L +EM +    P+   +  L+ A+ +M+K +       +ME  G   D+ T+ 
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            +I+ FC   ++     +L  M++ G  P+++T   ++    ++  + + V L+ +M +I
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  PD+  YN +I   CK   + +A++ + E+    + P   ++  +V+G    G   +A
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
               ++M+ R +   P   T  ALL++ ++  KV  AK+++  +V    + ++  ++  I
Sbjct: 245 ARLLRDMIKRKI--TPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLI 302

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + L  +  + EA      M+     P   ++  L+ G  K
Sbjct: 303 NGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCK 342


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 202/439 (46%), Gaps = 8/439 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  +I  L K +       +++ M  +  +L     +  ++     A+ V 
Sbjct: 197 PNVV----TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKL-DVVTYSTIIDGLCKAQAVD 251

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A  VL  M   G +PD   +  ++D LCK  +V  A  +   M ++  KP +  + +++
Sbjct: 252 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII 311

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK   +  A  VL  M D   +PDI  YN L+ GY   G+  +    L+EM  +G D
Sbjct: 312 DGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLD 371

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y++L+  LC+  K  EA + F  M R G + +V  Y  L+ G+     I    ++
Sbjct: 372 PDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDL 431

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M+  GI PN   +  ++ A+ KK  ++E + +   M + G  PDV  Y ++I   CK
Sbjct: 432 LDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           LG + +AV  +N+M    ++P +  F  +V+G        +A E F EM  +G+   P  
Sbjct: 492 LGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGV--RPNV 549

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                ++ +L    +V +A+ +   +   G   NV ++   I      G   EA      
Sbjct: 550 VFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDV 609

Query: 551 MMDADVMPQPDTFAKLMRG 569
           M+   + P   ++  L+RG
Sbjct: 610 MVSVGLKPDLISYDTLLRG 628



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 179/373 (47%), Gaps = 3/373 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F I++  +A   M+ +A+ +   M ++G  PD   +G L+DALCK   V +A   F++M
Sbjct: 446 IFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQM 505

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
             +   P+   F SL+YG C   +  +A+ +  +M D G  P++V +N ++      G++
Sbjct: 506 INDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQV 565

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  L+  M R G  PN  SY  LI   C   + +EA +    M   G + D+++Y TL
Sbjct: 566 MVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G+CK+ +ID  Y +   M+++G+ P  +TY  I+          E  EL   M K G 
Sbjct: 626 LRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ 685

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             D+  YN+++   CK   + EA  ++  + +  L P   +F +M+      G   +A +
Sbjct: 686 QWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMD 745

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F  +   GL+  P   T   ++ ++++   ++   +++  +   GC  +       I S
Sbjct: 746 LFASIPSHGLV--PNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRS 803

Query: 535 LFSNGHVKEACSY 547
           L   G +  A +Y
Sbjct: 804 LLGRGEIMRAGAY 816



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 206/435 (47%), Gaps = 8/435 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K +       +++ M  +  KP +   + +  L+  + S    K+ +  L+
Sbjct: 307 YNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDI---QTYNCLIHGYLSTGEWKEVVRRLE 363

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +PD   +  LLD LCKN    EA K+F  M R+  KP++  +  LL+G+   G
Sbjct: 364 EMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARG 423

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +   +L  M   G  P+  ++N +L  YA+   + +A  +   M + G  P+  +Y 
Sbjct: 424 AIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYG 483

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI ALC++ ++++A   F +M   G   + V + +L+ G C   + ++  E+   M  +
Sbjct: 484 ILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQ 543

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN + +  IM     + ++     L+  M ++G  P+V +YN +I   C  G   EA
Sbjct: 544 GVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEA 603

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + + M +  L P   S+  ++ G+   G +  A   F+EM+ +G+   P   T   +L
Sbjct: 604 AQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGV--TPGAVTYSTIL 661

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L   ++   AK+++  ++  G + ++Y + I ++ L     V EA      +   D+ 
Sbjct: 662 QGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLR 721

Query: 558 PQPDTFAKLMRGLKK 572
           P   TF  ++  L K
Sbjct: 722 PNIITFTIMIDVLFK 736



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 167/354 (47%), Gaps = 8/354 (2%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           PD   +  L    C+   ++     F   ++  ++ +      LL G C   ++ EA  +
Sbjct: 88  PDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDI 147

Query: 266 LVQ-MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQ 321
           L++ M + G  P++V  N LL G     ++ +A ELL  M   G   C PN  +Y  +I 
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            LC+ + ++ A      M   G + DVVTY+T+I G CK++ +DR   +L  MI +G+ P
Sbjct: 208 GLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKP 267

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + +TY  I+    K + ++    ++  M   G  PDV  YN +I   CK   +  A  V 
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVL 327

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
             M    + P   ++  ++HG+L  G   E     +EM  RGL   P   T   LL+ L 
Sbjct: 328 QHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGL--DPDVVTYSLLLDYLC 385

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +  K   A+ ++ C++ KG + NV  + I +H   + G + +     LD+M A+
Sbjct: 386 KNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDL-LDLMVAN 438



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 171/342 (50%), Gaps = 6/342 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI +L K+ +         +M  +   P  +   VF  L+    +    +KA E+  
Sbjct: 482 YGILIDALCKLGRVDDAVLKFNQMINDGVTPNSV---VFNSLVYGLCTVDRWEKAEELFF 538

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   F  ++  LC    V  A +L D M R   +P++  + +L+ G C  G
Sbjct: 539 EMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAG 598

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA  +L  M   G +PD++ Y+ LL GY + G++ +A+ L +EM RKG  P A +Y+
Sbjct: 599 RTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYS 658

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++Q L    +  EA   ++ M +SG + D+ TY  +++G CK+  +D  ++I  S+  +
Sbjct: 659 TILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSK 718

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + PN +T+  ++    K    ++ ++L   +   G VP+V  Y ++++   + G L E 
Sbjct: 719 DLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEF 778

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            N++  ME +  +P +     ++   LG+G ++ A  Y  ++
Sbjct: 779 DNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKI 820


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 210/437 (48%), Gaps = 12/437 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S   +  ++  L K  K  A     E +R+  P  ++   F IL+     A M+ +A  +
Sbjct: 189 SLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMP--VSAATFSILINGLVKAGMMIQAHSL 246

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
             E    GC  D   +  +++ L KN  ++EA  L +++      P++  + +LL G CK
Sbjct: 247 AQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCK 306

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G+L EA  +L ++ D G  PD+V Y +L+ G  +  +  +A++L KEM  +G   +   
Sbjct: 307 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVC 366

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           YT LI+ L +  K+ +A+  +  M   GC  DVVT +T+I G  K+ +I     I  SM 
Sbjct: 367 YTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSME 426

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            RG+ PN++ Y  ++    K  +++  +E++ +M+K  C PD   YN++I   CK G+++
Sbjct: 427 ARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 486

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A   ++EM  A   P   ++ +++ G    G    AC    +M      S+ ++    +
Sbjct: 487 AARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM------SSSRF-VYSS 539

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L++ L ++ K+E    ++  +   G   N    T  I  L     V EA S   + +  +
Sbjct: 540 LVDGLCKSGKLEGGCMLFHEMERSGVA-NSQTRTRLIFHLCKANRVDEAVSL-FNAIRKE 597

Query: 556 VMPQPDTFAKLMRGLKK 572
            MP P  +  ++  L K
Sbjct: 598 GMPHPYAYNSIISALIK 614



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 214/469 (45%), Gaps = 20/469 (4%)

Query: 111 INRCGDAGNLGYRYYM-WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169
           I +C    +L +  +   +S +  + HS     AL+   ++ ++      L+      K 
Sbjct: 91  IFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLL------KN 144

Query: 170 QLIT-----TEVFVILMRRFASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNS 223
           +L T      E + +L+  +  AR  ++A  V+ EM + +G  P       +L  LCK+ 
Sbjct: 145 ELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSG 204

Query: 224 SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
            V  A   F+ +R     S   F+ L+ G  K G +++A  +  +    G   DI  Y  
Sbjct: 205 KVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTA 264

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           +++  A+  K+ +A  L++++   GC P   +Y  L+  LC+M ++EEA     ++  +G
Sbjct: 265 IVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 324

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C  DVVTYT+LI G  K ++    Y++   M  RG+  + + Y  ++    +  ++ +  
Sbjct: 325 CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQAS 384

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +   M   GCVPDV   + +I    K G +  AV ++  MEA  L+P    +  ++HG 
Sbjct: 385 SVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 444

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                +  A E   +M  +     P   T   L++ L ++  VE A+  +  ++  GC+ 
Sbjct: 445 CKARKMDCALEMLAQM--KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP 502

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +VY + I I  L   G+   AC    DM  +  +     ++ L+ GL K
Sbjct: 503 DVYTYNILISGLCKAGNTDAACGVLDDMSSSRFV-----YSSLVDGLCK 546



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 172/379 (45%), Gaps = 8/379 (2%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           +F CL DA        E  +     R  F+ S+    +LL  + +  +  EA  +L    
Sbjct: 91  IFQCLKDA----DLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNEL 146

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEKM 329
              F PD+  +N L++GY    +  +AF +++EM    G  P+  ++ +++  LC+  K+
Sbjct: 147 ATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKV 206

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
             A   F  + RS       T++ LI+G  K+  + + + +       G   +  TY  I
Sbjct: 207 LAAMDHFEAVRRS-MPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAI 265

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +    K ++++E V LM ++   GC P ++ YN ++   CK+G L+EA+++  ++     
Sbjct: 266 VNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 325

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           +P   ++  ++ G   +    EA + FKEM  RGL  A       AL+  LL+  K+  A
Sbjct: 326 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGL--ALDTVCYTALIRGLLQTGKIPQA 383

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             V+  + + GC  +V   +  I  L   G +  A      M    + P    ++ L+ G
Sbjct: 384 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 443

Query: 570 LKKLYNRQIAAEITEKVRK 588
           L K      A E+  +++K
Sbjct: 444 LCKARKMDCALEMLAQMKK 462



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 122/280 (43%), Gaps = 44/280 (15%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDEMPK 202
           +I  LSK  + GA   + + M  E   L   EV +  L+     AR +  A+E+L +M K
Sbjct: 405 MIDGLSKAGRIGAAVRIFKSM--EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 462

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
             C PD   +  L+D LCK+  V+ A   FDEM E   KP +  +  L+ G CK G    
Sbjct: 463 AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDA 522

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A  VL  M  + F     VY++L+ G  + GK+     L  EM R G   N+ + T LI 
Sbjct: 523 ACGVLDDMSSSRF-----VYSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANSQTRTRLIF 576

Query: 322 ALCRMEKMEEANRAFVEMERSGC---------------------------------EADV 348
            LC+  +++EA   F  + + G                                  + D 
Sbjct: 577 HLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTRWWKPDR 636

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           VTY  L++G   + ++DR +     M  RG +P  ++ LH
Sbjct: 637 VTYNALLNGMIGANRMDRAHYYYLEMTGRGYVP-PVSILH 675



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 101/273 (36%), Gaps = 79/273 (28%)

Query: 110 VINRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +I+    AG +G    ++ S +     PN V    VY ALI  L K RK      ++ +M
Sbjct: 405 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEV----VYSALIHGLCKARKMDCALEMLAQM 460

Query: 165 RKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD-------------- 208
           +K    P  IT   + IL+     +  V+ A    DEM + GC+PD              
Sbjct: 461 KKAFCTPDTIT---YNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKA 517

Query: 209 ----------------EFVFGCLLDALCKNSS---------------------------- 224
                            FV+  L+D LCK+                              
Sbjct: 518 GNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFH 577

Query: 225 ------VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
                 V EA  LF+ +R+   P    + S++    K GK+ E + V  +M    ++PD 
Sbjct: 578 LCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTR-WWKPDR 636

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           V YN LL+G     +M  A     EM  +G  P
Sbjct: 637 VTYNALLNGMIGANRMDRAHYYYLEMTGRGYVP 669


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 215/479 (44%), Gaps = 55/479 (11%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLDEMP 201
           L+  + +M +   V +L ++M +++   I  ++  F IL++ F S   +  A+    ++ 
Sbjct: 85  LMGVVVRMERPDLVISLYQKMERKQ---IRCDIYSFNILIKCFCSCSKLPFALSTFGKIT 141

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLV 260
           K G  PD   F  LL  LC    V EA   F +M E   +P++  FT+L+ G C+EG++V
Sbjct: 142 KLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVL 319
           EA  +L +M + G +P  + Y  ++ G  + G    A  LL++M       PN   Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS---------------RKI 364
           I +LC+  +  +A   F EM+  G   D+ TY ++I GFC S               RKI
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 365 D--------------------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                                   E+ D M+ RGI+PN +TY  ++    K+  L+    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   GC P++  +N +I   C    + + + + +EM    L   T ++  ++HGF 
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA-----------KDVW 513
             G L  A +  +EM+  GL   P   T   LL+ L    K++ A           KD+ 
Sbjct: 442 LVGDLNAALDLLQEMISSGL--CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +     G E +V  + I I  L + G   EA     +M    ++P   T++ ++ GL K
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 219/467 (46%), Gaps = 53/467 (11%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P ++T   F  LM        + +A+ +LD M + G +P +  +G ++D +CK      
Sbjct: 181 RPNVVT---FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVS 237

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E     P++  +++++   CK+G+  +A+ +  +M++ G  PD+  YN+++
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   G+ +DA +LL+EM  +   P+  +Y  LI A  +  K  EA   + EM   G  
Sbjct: 298 VGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII 357

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            + +TY+++I GFCK  ++D    +   M  +G  PN +T+  ++  +   + +++ +EL
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL---------------- 449
           + EM + G V D + YN +I     +G+L  A+++  EM ++ L                
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 450 ------------------------------SPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
                                          P   ++ +++ G + +G  +EA E ++EM
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
             RG++  P   T  ++++ L +  +++ A  ++  + +K    NV  +T  I+     G
Sbjct: 538 PHRGIV--PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            V +      +M    ++    T+  L+ G +K+ N   A +I +++
Sbjct: 596 RVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 19/383 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I       ++     L++EM  RK  P ++T   +  L+  F       +A E+ D
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT---YNALINAFVKEGKFFEAEELYD 349

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  ++D  CK + +  A  +F  M  +   P+L  F +L+ G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +L +M + G   D   YN L+ G+  +G +  A +LL+EM   G  P+  +  
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDR 366
            L+  LC   K+++A   F  M++S           G E DV TY  LISG     K   
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P+V  +  +I 
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + + + ++ EM    +     +++ ++ GF   G +  A + F+EM+  G+  
Sbjct: 590 GYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY- 648

Query: 487 APQYGTLKALLNSLLRAQKVEMA 509
            P   T++ +L  L   ++++ A
Sbjct: 649 -PDTITIRNMLTGLWSKEELKRA 670



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P LIT   F  L+  +  A+ 
Sbjct: 358 PNTI----TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLIT---FNTLIDGYCGAKR 410

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EM + G   D   +  L+        +  A  L  EM      P +    +
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + F  M       +VVT+TTLI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 418 -VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++  N++  L  K  ELK AV +  +++ +
Sbjct: 651 TITIRNMLTGLWSK-EELKRAVAMLEKLQMS 680



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 182/409 (44%), Gaps = 4/409 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L   F   + ++ AI++  +M +    P    F  L+  + +         L+ +M R++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +  +  F  L+  +C   KL  A     ++   G  PD+V +  LL G     ++++A 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +   +M    C PN  ++T L+  LCR  ++ EA      M   G +   +TY T++ G 
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 359 CKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           CK         +L  M +   I+PN + Y  I+ +  K     +   L  EM++ G  PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN +I   C  G   +A  +  EM    +SP   ++  +++ F+ +G   EA E + 
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ RG++  P   T  ++++   +  +++ A+ ++  + TKGC  N+  +   I     
Sbjct: 350 EMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              + +      +M +  ++    T+  L+ G   + +   A ++ +++
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 208/418 (49%), Gaps = 15/418 (3%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYR---YYMWAS 129
           DVE +FRI+    S    L+ +L+ SGV L   L ++V+ R   +    ++   ++ + +
Sbjct: 59  DVETVFRIVSS-ASSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQALAFFNYTN 117

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K+  + H+      ++  L + R+F  +W L+ +MR++   LI+     +++ R A    
Sbjct: 118 KRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSLISPRSVQVVLGRIAKVCS 177

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           VK+ +E   +  K   E D   F  LL  LC+  S+++A  ++  ++  F+P LR F  L
Sbjct: 178 VKQTVESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRTFNIL 237

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L GW K  +  EA+    +M++ G EPD+V YN L+  Y +  ++  A++++ +MR +  
Sbjct: 238 LSGW-KSAE--EAEGFFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQI 294

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  SYT +I  L  + + ++A     EM+  GC  DV  Y   I  FC + ++     
Sbjct: 295 SPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIANRLGDADG 354

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           ++D M+ +G+ PN  TY           +L     L   M+K GC+P+  +   + RL  
Sbjct: 355 LMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQSCMFLTRLFR 414

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFV----VMVHGFLGQGCLIEACEYFKEMVGRG 483
           +  +++ A+ +WN+M    +  G  S++    V+       G L+E  +   +M+ +G
Sbjct: 415 RQEKVEMALELWNDM----VEKGFGSYILVSDVLFDMLCDMGKLVEVEKCCLQMIEKG 468



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 46/307 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           + AL+++L + +       +   ++ + +P L T   F IL+  + SA   ++A    DE
Sbjct: 200 FNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRT---FNILLSGWKSA---EEAEGFFDE 253

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGK 258
           M + G EPD   + CL+D  CK   ++ A K+ D+MR E+  P +  +TS++ G    G+
Sbjct: 254 MREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQ 313

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-------------- 304
             +A+ VL +MK+ G  PD+  YN  +  +    ++ DA  L+ EM              
Sbjct: 314 PDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNATTYNL 373

Query: 305 ---------------------RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
                                ++ GC PN  S   L +   R EK+E A   + +M   G
Sbjct: 374 FFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQSCMFLTRLFRRQEKVEMALELWNDMVEKG 433

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE---KKEELE 400
             + ++    L    C   K+    +    MI++G  P+ +++  I +  E   K E L+
Sbjct: 434 FGSYILVSDVLFDMLCDMGKLVEVEKCCLQMIEKGHKPSNVSFRRIKVLMELANKHEALQ 493

Query: 401 ECVELMG 407
              E M 
Sbjct: 494 NLTEKMA 500


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 220/472 (46%), Gaps = 44/472 (9%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN +    +Y+ LI +LS+  +      L+EEM     +P +   + F  ++     A  
Sbjct: 233 PNSI----IYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDV---QTFNDVIHGLCKAGR 285

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL------------------ 231
           + +A ++ D M       D  + G L+  LC+   V EA  +                  
Sbjct: 286 IHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLING 345

Query: 232 ------FDEMRE---------RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
                 F+E ++          F+P    F  ++ G CK+G LV A   L +M   GFEP
Sbjct: 346 YVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEP 405

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           +++ Y  L+ G+ + G   +A +++  M  KG   N   Y  LI ALC+  K+++A + +
Sbjct: 406 NVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMY 465

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM   GC+ D+ T+ +LI G CK+ K++    +   M+  G++ N +TY  ++ A  + 
Sbjct: 466 GEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRL 525

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
           E +++  +L+GEMR  GC  D   YN +I+  CK G  ++ + +  +M    + P  +S 
Sbjct: 526 ELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSC 585

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            ++++ F   G + +A ++ ++M+ RGL   P   T  +L+N L +  + + A ++++ +
Sbjct: 586 NILINSFCRTGKVNDALQFLRDMIQRGL--TPDIVTYNSLINGLCKMGRFQEALNLFNGL 643

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
             KG   +   +   I      G   +AC      +    +P   T++ L+ 
Sbjct: 644 QAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILIN 695



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 219/464 (47%), Gaps = 12/464 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A  Q  Y+HS+ VY  LI  L  + +F  +  L+++M+ E   +    +F+++MR +  A
Sbjct: 84  AGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGC-VFKESLFILIMRYYGKA 142

Query: 188 RMVKKAIEVLDEMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
            +  +A  +L +M    C EP    +  +L+ L   +  K A  +F +M  R   P++  
Sbjct: 143 GLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYT 202

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  ++  +C   ++  A  +L  M   G  P+ ++Y  L+   ++  ++ +A +LL+EM 
Sbjct: 203 FGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMF 262

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC+P+  ++  +I  LC+  ++ EA +    M      AD +    L+ G C+  K+D
Sbjct: 263 LMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVD 322

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM-GEMRKIGCVPDVSNYNVV 424
               +L  +      PN + Y  ++  +      EE  +L+   M   G  PD   +N++
Sbjct: 323 EARAMLSKIPN----PNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIM 378

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK G L  A+   +EM      P   ++ +++ GF  QG   EA +    M  +GL
Sbjct: 379 IDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGL 438

Query: 485 -LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            L+   Y     L+ +L +  K++ A  ++  + +KGC+ ++Y +   I+ L  N  ++E
Sbjct: 439 SLNTVGY---NCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEE 495

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           A     DM+   V+    T+  L+    +L   Q A ++  ++R
Sbjct: 496 ALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMR 539



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 173/358 (48%), Gaps = 10/358 (2%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-- 167
           V  R  +A +L Y+  + A  +P+       +  +I  L K     +    ++EM K+  
Sbjct: 348 VSGRFEEAKDLLYKNMVIAGFEPDAF----TFNIMIDGLCKKGYLVSALEFLDEMVKKGF 403

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P +IT   + IL+  F      ++A +V++ M   G   +   + CL+ ALCK+  +++
Sbjct: 404 EPNVIT---YTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQD 460

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A +++ EM  +  KP +  F SL+YG CK  K+ EA  +   M   G   + V YN L+ 
Sbjct: 461 ALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIH 520

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            + ++  +  A +L+ EMR +GC  +  +Y  LI+ALC+    E+      +M       
Sbjct: 521 AFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFP 580

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
            + +   LI+ FC++ K++   + L  MIQRG+ P+ +TY  ++    K    +E + L 
Sbjct: 581 SINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLF 640

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
             ++  G  PD   YN +I   C  G   +A  +  +  +    P   ++ ++++ F+
Sbjct: 641 NGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFV 698



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 139 DVY--RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           D+Y   +LI  L K  K      L  +M  E   +  T  +  L+  F    ++++A ++
Sbjct: 476 DIYTFNSLIYGLCKNDKMEEALGLYRDMLLEG-VIANTVTYNTLIHAFLRLELIQQADKL 534

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           + EM   GC  D   +  L+ ALCK  + ++   L ++M  E   PS+     L+  +C+
Sbjct: 535 VGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCR 594

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            GK+ +A   L  M   G  PDIV YN+L++G  +MG+  +A  L   ++ KG  P+A +
Sbjct: 595 TGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVT 654

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           Y  LI   C      +A +   +   +G   + +T++ LI+ F K+      + IL
Sbjct: 655 YNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTIL 710


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 213/450 (47%), Gaps = 12/450 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
            S  PN V     Y  +I  L K +       + + M  +K        +  L+  + S 
Sbjct: 196 GSHTPNVV----TYTTVIDGLCKAQMVDRAKGVFQHM-IDKGVRPNNHTYTCLIHGYLST 250

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHF 246
              K+ +++L EM  +G +PD  ++  LLD LCKN    EA  +FD + R+  KP +  +
Sbjct: 251 GKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIY 310

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             LL+G+  EG L E    L  M   G  PD  ++N + + YA+   + +A  +  +MR+
Sbjct: 311 GILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQ 370

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +   P   +Y  LI ALC++ ++++A   F +M   G   D+  +++L+ G C   K ++
Sbjct: 371 QWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEK 430

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++   ++ +GI  N   +  +M    ++  + E   L+  M ++   PDV +YN ++ 
Sbjct: 431 AEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVD 490

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C  G + EA  + + M +  L P   ++  ++HG+     + +A   F+EM+ +GL  
Sbjct: 491 GHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGL-- 548

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC- 545
            P   T   +L+ L +  +   AK+++  ++    + ++Y +TI ++ L  N  V EA  
Sbjct: 549 TPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFK 608

Query: 546 ---SYCLDMMDADVMPQPDTFAKLMRGLKK 572
              S C   +  D+         L++G +K
Sbjct: 609 MFQSLCSKDLQLDIFTINIMIGALLKGGRK 638



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 198/435 (45%), Gaps = 9/435 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL-DE 199
           Y  LI    +M +    +A    + K    L  T +F  L++    A+ V +A ++L   
Sbjct: 95  YTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRR 154

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLYGWCK 255
           MP++GC  +   +  LL  LC     +EA +L   M +       P++  +T+++ G CK
Sbjct: 155 MPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCK 214

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
              +  AK V   M D G  P+   Y  L+ GY   GK  +  ++L+EM   G  P+   
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVI 274

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y VL+  LC+  +  EA   F  + R G +  V  Y  L+ G+     +   +  LD M+
Sbjct: 275 YAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMV 334

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G+ P+   +  +  A+ KK  ++E + +  +MR+    P V NY  +I   CKLG + 
Sbjct: 335 RNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVD 394

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLK 494
           +AV  +N+M    ++P    F  +V+G        +A + F E++ +G+ L+A  +    
Sbjct: 395 DAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNI-- 452

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L+ +L R  +V  A+ +   ++      +V ++   +      G + EA      M+  
Sbjct: 453 -LMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSI 511

Query: 555 DVMPQPDTFAKLMRG 569
            + P   T+  L+ G
Sbjct: 512 GLKPDEFTYNTLLHG 526



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 178/375 (47%), Gaps = 8/375 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVLD 198
           Y ALI +L K+ +         +M  E    +T ++FV   L+    +    +KA ++  
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMINEG---VTPDIFVFSSLVYGLCTVDKWEKAEKLFF 436

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           E+   G   +   F  L+  LC+   V EA +L D M R   +P +  + +L+ G C  G
Sbjct: 437 EVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTG 496

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  +L  M   G +PD   YN LL GY +  ++ DA+ L +EM  KG  P   +Y 
Sbjct: 497 RIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYN 556

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  L ++ +  EA   ++ M  +  + D+ TYT +++G C++  +D  +++  S+  +
Sbjct: 557 TILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSK 616

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            +  +  T   ++ A  K    E+ ++L   +   G VPDV  Y ++     K G L+E 
Sbjct: 617 DLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEEL 676

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +++ ME    +P +     +V   L +G +  A  Y  ++  +    + +  T   L+
Sbjct: 677 DELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNF--SLEASTTSMLI 734

Query: 498 NSLLRAQKVEMAKDV 512
           +   RA+  ++AK +
Sbjct: 735 SIYSRAEYQQLAKSL 749



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 7/283 (2%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA-DVVTYTTLISGFCKSRKIDRCYE 369
           P++ +YT+LI   CRM +++    AF  + ++G    + V +  L+ G C ++++D   +
Sbjct: 90  PSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATD 149

Query: 370 I-LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG---CVPDVSNYNVVI 425
           I L  M + G   N ++Y  ++     ++  EE +ELM  M   G     P+V  Y  VI
Sbjct: 150 ILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVI 209

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK   +  A  V+  M    + P   ++  ++HG+L  G   E  +  +EM   GL 
Sbjct: 210 DGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGL- 268

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P       LL+ L +  +   A++++  ++ KG + +V  + I +H   + G + E  
Sbjct: 269 -QPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMH 327

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           S+   M+   V P    F  +     K      A  I +K+R+
Sbjct: 328 SFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQ 370


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 195/420 (46%), Gaps = 11/420 (2%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            + HS+  +  +I  L     F     L+  M++EK   IT ++F+ + R +        
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCN-ITEDIFLSICRAYGRVHKPLD 103

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+ V  +M +Y CEP +  +  +   L   + +K A + +  MRE    PS+     L+ 
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 252 GWCK-EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
             CK  G +  A  +  +M + G  P    Y  L+ G  ++GK+ +A EL KEM  K C 
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACS 223

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P   +Y  LI  LC+ + ++ A R   EM   G + +V TY++L+ G CKS    R  E+
Sbjct: 224 PTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALEL 283

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M+ R  LPN +TY  ++    K+ +L+E VE++  M+  G  PD   Y  +I   C 
Sbjct: 284 LDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCD 343

Query: 431 LGELKEAVNVWNEMEAASLSPG--TDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGL 484
           + +  EA N  +EM    +SP   T S  V +H  + QG   E    A + +  M  RG+
Sbjct: 344 ICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGI 403

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +    T  +L+N       +  A  +   +V  GC  +   W   + + +    V+E+
Sbjct: 404 --SIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDRRKVRES 461



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 144/284 (50%), Gaps = 21/284 (7%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKA 193
           HSY  Y  LI  L ++ K G    L +EM  +   P ++T   +  L+     ++ +  A
Sbjct: 190 HSY-TYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVT---YXSLIHGLCQSKDLDSA 245

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYG 252
           I +L+EM   G +P+ F +  L+D  CK+     A +L D M   R  P++  +++L++G
Sbjct: 246 IRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHG 305

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CKEGKL EA  +L +MK  G  PD  +Y  ++SG+  + K  +A   L EM   G  PN
Sbjct: 306 LCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPN 365

Query: 313 ANSYT-------VLIQALCRMEKMEEANRAF---VEMERSGCEADVVTYTTLISGFCKSR 362
             +++       +++Q LC     E  NRAF   + M   G   D  T+ +L++ FC   
Sbjct: 366 RLTWSLHVRIHNIVVQGLC----TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKG 421

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
            + +   ++D M+  G +P++ T+  ++ A   + ++ E  EL+
Sbjct: 422 DLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDRRKVRESAELV 465



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 48/389 (12%)

Query: 225 VKEAAKLFDEMRERFKPSLRH----FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           +++A  +FD     +    RH    F+ ++           A+ +L +MK+        +
Sbjct: 28  IQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDI 87

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY------------------------ 316
           + ++   Y ++ K  DA  + ++M+   C+P+  SY                        
Sbjct: 88  FLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMR 147

Query: 317 -----------TVLIQALCRME-KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
                       VLI+ALC+    M+ A R F EM   GC     TY TLI G C+  KI
Sbjct: 148 EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKI 207

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
               E+   M  +   P  +TY  ++    + ++L+  + L+ EM   G  P+V  Y+ +
Sbjct: 208 GEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSL 267

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +   CK G    A+ + + M +    P   ++  +VHG   +G L EA E    M  +GL
Sbjct: 268 MDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGL 327

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT--IWIHSLFSNG--- 539
              P  G    +++      K   A +    +V  G   N   W+  + IH++   G   
Sbjct: 328 --RPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCT 385

Query: 540 -HVKEACSYCLDMMDADVMPQPDTFAKLM 567
            H   A    L M    +     TF  L+
Sbjct: 386 EHPNRAFQLYLSMRTRGISIDAKTFDSLV 414



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 141/321 (43%), Gaps = 48/321 (14%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GF      ++ ++S          A ELL  M+ + C+   + +  + +A  R+ K  +A
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            R F +M+   CE                                   P+Q +Y+ +   
Sbjct: 105 VRVFRKMKEYECE-----------------------------------PSQKSYITVFAI 129

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK-LGELKEAVNVWNEMEAASLSP 451
              + +L+  +     MR++G  P V++ NV+I+  CK  G +  A+ ++ EM      P
Sbjct: 130 LVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPP 189

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
            + ++  ++ G    G + EA E FKEM  +    +P   T  +L++ L +++ ++ A  
Sbjct: 190 HSYTYGTLIXGLCRLGKIGEAKELFKEMETKA--CSPTVVTYXSLIHGLCQSKDLDSAIR 247

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY-CLDMMDADV----MPQPDTFAKL 566
           +   + +KG + NV+ +     S   +GH K  CS   L+++D  V    +P   T++ L
Sbjct: 248 LLEEMASKGIKPNVFTY-----SSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTL 302

Query: 567 MRGLKKLYNRQIAAEITEKVR 587
           + GL K    Q A EI ++++
Sbjct: 303 VHGLCKEGKLQEAVEILDRMK 323


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 182/375 (48%), Gaps = 3/375 (0%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           MP+ GC    F +  LL  LC    V+EA  +F  M  +   P    ++ +++G C  G+
Sbjct: 135 MPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGR 194

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             EA  +L      GF P++ VYN L+ GY   G +  A ++ K M+ KGC PN  +YT 
Sbjct: 195 AGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQ 254

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   C+  K+E A   +  M  +G   +VVTYTTLI G C    ++  + +L SM   G
Sbjct: 255 LICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACG 314

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN+ T L ++ A  K   +EE  + +G + + G   +   Y  +I   CK G+   A 
Sbjct: 315 LAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAH 374

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           N+  ++      P    +  ++ G   +  L+EA     +M+  G+ +     T+  L++
Sbjct: 375 NLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTI--LID 432

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
             LR  + +  K +   +   G + +V  +T++I S   +G +++A S  + M+D  V P
Sbjct: 433 KHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRP 492

Query: 559 QPDTFAKLMRGLKKL 573
              T+  L++G   L
Sbjct: 493 NLTTYNTLIKGYANL 507



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 184/411 (44%), Gaps = 8/411 (1%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           LL AL ++  + +   L   M  R   +L  +T+L+  +C  G L  AK  L  +  AG 
Sbjct: 49  LLMALARHGMLSDMESLAARMPVR---NLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGL 105

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            PD   Y + + GY + G    A  L   M ++GC     +Y  L+Q LC    + EA  
Sbjct: 106 APDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMA 165

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F  M   GC  D   Y+ ++ G C + +      +L   + +G +PN   Y  ++  + 
Sbjct: 166 VFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYC 225

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
              +LE  +++   M+  GC+P+V  Y  +I   CK G+++ A+ +++ M  A L+P   
Sbjct: 226 STGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVV 285

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ G   +G L  A      M   GL  AP   T   L+++L +  ++E A+    
Sbjct: 286 TYTTLIQGQCSEGHLEHAFRLLHSMEACGL--APNEWTCLVLIDALCKHGRIEEAQQFLG 343

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            +V KG ++N   +T  I +L  +G    A +    ++    +P    ++ L+ GL +  
Sbjct: 344 SLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCR-E 402

Query: 575 NRQIAA--EITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRA 623
           N+ + A   + + +        + F +   +  R+ +  + K +  R   A
Sbjct: 403 NKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAA 453



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 195/439 (44%), Gaps = 16/439 (3%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY  ++  L    + G   AL+ +    K  +    V+  L+  + S   ++ AI++   
Sbjct: 181 VYSIMVHGLCGAGRAGEAVALLTDAMG-KGFVPNVAVYNALIDGYCSTGDLELAIDIFKG 239

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   GC P+   +  L+   CK+  V+ A  L+  M E    P++  +T+L+ G C EG 
Sbjct: 240 MQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGH 299

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L  A  +L  M+  G  P+      L+    + G++ +A + L  + +KG   N   YT 
Sbjct: 300 LEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTS 359

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I ALC+  K + A+    ++   G   D   Y++LI G C+  K+     +L+ MI+ G
Sbjct: 360 MIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESG 419

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           +  N + +  ++  H ++   +    +   M   G  PDV  Y V IR  C+ G +++A 
Sbjct: 420 VQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAE 479

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG--------------L 484
           ++  +M    + P   ++  ++ G+   G + +A    K M+  G              L
Sbjct: 480 SMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLL 539

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L    Y  L A   SL +   +++ +++   ++   C    Y +  +I  L     ++EA
Sbjct: 540 LKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEA 599

Query: 545 CSYCLDMMDADVMPQPDTF 563
            S+ + M  A++ P  D +
Sbjct: 600 KSFLVGMQSANLTPSEDVY 618



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 151/366 (41%), Gaps = 53/366 (14%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y ++I +L K  KF     LM+++  E   +    ++  L+        + +AI +L++
Sbjct: 356 IYTSMIDALCKSGKFDGAHNLMQKIITEG-FVPDAHMYSSLIDGLCRENKLLEAISLLND 414

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G + +   F  L+D   +         + D M     KP +  +T  +  +C++G+
Sbjct: 415 MIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGR 474

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A+ +++QM D G  P++  YN L+ GYA +G ++ AF  LK M   GC PN  SYTV
Sbjct: 475 MEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTV 534

Query: 319 L---------------------------------------------------IQALCRME 327
           L                                                   I+ L +++
Sbjct: 535 LLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVD 594

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           ++EEA    V M+ +        YT +I    + + +      LDSM++R  LP   +Y 
Sbjct: 595 RLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYR 654

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            I+ A  ++        + G++       D   + ++I    + G   +   + + ME  
Sbjct: 655 FIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQ 714

Query: 448 SLSPGT 453
           +  PG+
Sbjct: 715 NCRPGS 720



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 182/465 (39%), Gaps = 69/465 (14%)

Query: 73  DVEKIFRILKKFHSR--LPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           D+E    I K   S+  LP +    Q      + G  ER +        + Y   + A  
Sbjct: 229 DLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAM--------VLYSRMIEAGL 280

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE-VFVILMRRFASARM 189
            PN V     Y  LI+           + L+  M  E   L   E   ++L+        
Sbjct: 281 APNVV----TYTTLIQGQCSEGHLEHAFRLLHSM--EACGLAPNEWTCLVLIDALCKHGR 334

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +++A + L  + + G + ++ ++  ++DALCK+     A  L  ++  E F P    ++S
Sbjct: 335 IEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSS 394

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G C+E KL+EA  +L  M ++G + + V +  L+  + +  +      +   M   G
Sbjct: 395 LIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAG 454

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +YTV I++ C+  +ME+A    ++M   G   ++ TY TLI G+     + + +
Sbjct: 455 VKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAF 514

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV----------------ELMGEMRKI 412
             L +MI  G  PN  +Y  ++    KK    + V                EL+ E+ K+
Sbjct: 515 SSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKL 574

Query: 413 GC-----------------------------------VPDVSNYNVVIRLACKLGELKEA 437
            C                                    P    Y  +I    ++  LKEA
Sbjct: 575 QCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEA 634

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           +   + M   +  P  +S+  ++     +G    A   F +++ +
Sbjct: 635 LRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSK 679



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 26/278 (9%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           A  +P+ V     Y   I+S  +  +     ++M +M     +P L T   +  L++ +A
Sbjct: 453 AGVKPDVV----TYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTT---YNTLIKGYA 505

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA------------KLFD 233
           +  +V +A   L  M   GC+P++  +  LL  L K +S  +              K+ +
Sbjct: 506 NLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLE 565

Query: 234 EMRE---RFKPSLRHFTSLLYGWC--KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           E+ E   + + S   +    +  C  K  +L EAK  LV M+ A   P   VY  ++   
Sbjct: 566 ELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECC 625

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +M  + +A   L  M ++   P   SY  +I ALC       A   F ++       D 
Sbjct: 626 YRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDE 685

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
           + +  LI G  +      C  +L  M ++   P    Y
Sbjct: 686 IAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIY 723



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/342 (17%), Positives = 128/342 (37%), Gaps = 53/342 (15%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            +V    +Y +LI  L +  K     +L+ +M +   Q      F IL+ +         
Sbjct: 384 GFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVP-FTILIDKHLREFRSDS 442

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
              + D M   G +PD   +   + + C++  +++A  +  +M +   +P+L  + +L+ 
Sbjct: 443 PKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIK 502

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEP-------------------DIV------------- 279
           G+   G + +A   L  M D G +P                   D+V             
Sbjct: 503 GYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMK 562

Query: 280 -------------------VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
                              VY+  +   +++ ++ +A   L  M+     P+ + YT +I
Sbjct: 563 VLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMI 622

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
           +   RM+ ++EA R    M +      + +Y  +I   C+         I   ++ +   
Sbjct: 623 ECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYN 682

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +++ +  ++    +K    +C  L+  M +  C P  + Y+
Sbjct: 683 RDEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYS 724


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 217/444 (48%), Gaps = 12/444 (2%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           LR GL +    +  DA +L +R  + +   P  +     +  L  +++K +++  V AL 
Sbjct: 60  LRSGLVDI---KADDAIDL-FRDMIHSRPLPTVID----FSRLFSAIAKTKQYDLVLALC 111

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           ++M + K          I++  F   R +  A   + ++ K G EP+   F  L++ LC 
Sbjct: 112 KQM-ELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCL 170

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
              V EA +L D M E   KP L    +L+ G C  GK  EA  ++ +M + G +P+ V 
Sbjct: 171 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y  +L+   + G+   A ELL++M  +    +A  Y+++I  LC+   ++ A   F EME
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   +++TY  LI GFC + + D   ++L  MI+R I PN +T+  ++ +  K+ +L 
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 350

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  EL  EM   G  PD   Y  +I   CK   L +A  + + M +    P   +F +++
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 410

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           +G+     + +  E F++M  RG+++     T   L+       K+ +AK+++  +V++ 
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTV--TYNTLIQGFCELGKLNVAKELFQEMVSRK 468

Query: 521 CELNVYAWTIWIHSLFSNGHVKEA 544
              N+  + I +  L  NG  ++A
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKA 492



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 202/428 (47%), Gaps = 22/428 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASAR 188
           QPN V    V   + KS       G     ME +RK + + I  +   + I++       
Sbjct: 225 QPNAVTYGPVLNVMCKS-------GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 277

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFT 247
            +  A  + +EM   G   +   +  L+   C      + AKL  D ++ +  P++  F+
Sbjct: 278 SLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFS 337

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+  + KEGKL EA+ +  +M   G  PD + Y +L+ G+ +   +  A +++  M  K
Sbjct: 338 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GCDPN  ++ +LI   C+  ++++    F +M   G  AD VTY TLI GFC+  K++  
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 457

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+   M+ R + PN +TY  ++       E E+ +E+  ++ K     D+  YN++I  
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 517

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C   ++ +A +++  +    + PG  ++ +M+ G   +G L EA   F++M   G   A
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG--HA 575

Query: 488 PQYGTLKALLNSLLRAQ--KVEMAKDVWSCIVTKGCELNVYAWTI-WIHSLFSNGHVKEA 544
           P   T     N L+RA     +  K V      K C  +V A TI  +  + S+G +K++
Sbjct: 576 PDGWT----YNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKS 631

Query: 545 CSYCLDMM 552
               LDM+
Sbjct: 632 ---FLDML 636



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 191/442 (43%), Gaps = 40/442 (9%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L  +M   +P L T   F  L    A  +     + +  +M   G   + +    +++  
Sbjct: 75  LFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCF 133

Query: 220 CKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C+   +  A     ++ +  ++P+   F++L+ G C EG++ EA  ++ +M + G +PD+
Sbjct: 134 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 193

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           +  N L++G    GK  +A  L+ +M   GC PNA +Y  ++  +C+  +   A     +
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRK 253

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME    + D V Y+ +I G CK   +D  + + + M  +GI  N                
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN---------------- 297

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
                              +  YN++I   C  G   +   +  +M    ++P   +F V
Sbjct: 298 -------------------IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++  F+ +G L EA E  KEM+ RG+  AP   T  +L++   +   ++ A  +   +V+
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGI--APDTITYTSLIDGFCKENHLDKANQMVDLMVS 396

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
           KGC+ N+  + I I+       + +       M    V+    T+  L++G  +L    +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456

Query: 579 AAEI-TEKVRKMAAERQITFKM 599
           A E+  E V +      +T+K+
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKI 478



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 142/316 (44%), Gaps = 6/316 (1%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG   + K  DA +L ++M      P    ++ L  A+ + ++ +       +ME  G
Sbjct: 60  LRSGLVDI-KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKG 118

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++ T + +I+ FC+ RK+   +  +  +I+ G  PN +T+  ++     +  + E +
Sbjct: 119 IAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEAL 178

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           EL+  M ++G  PD+   N ++   C  G+  EA+ + ++M      P   ++  +++  
Sbjct: 179 ELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVM 238

Query: 464 LGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              G    A E  ++M  R + L A +Y     +++ L +   ++ A ++++ +  KG  
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSI---IIDGLCKHGSLDNAFNLFNEMEMKGIT 295

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N+  + I I    + G   +      DM+   + P   TF+ L+    K    + A E+
Sbjct: 296 TNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 355

Query: 583 -TEKVRKMAAERQITF 597
             E + +  A   IT+
Sbjct: 356 HKEMIHRGIAPDTITY 371


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/559 (22%), Positives = 244/559 (43%), Gaps = 83/559 (14%)

Query: 78  FRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHS 137
           F IL K      KL  AL   G + + GL                         P+ V  
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGL------------------------HPDVV-- 150

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIE 195
              +  L+  L    +      L  +M +   +P ++T   F  LM        + +A+ 
Sbjct: 151 --TFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVT---FTTLMNGLCREGRIVEAVA 205

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGW 253
           +LD M + G +P +  +G ++D +CK      A  L  +M E     P++  +++++   
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+G+  +A+ +  +M++ G  PD+  YN+++ G+   G+ +DA +LL+EM  +   P+ 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  LI A  +  K  EA   + EM   G   + +TY+++I GFCK  ++D    +   
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M  +G  PN +T+  ++  +   + +++ +EL+ EM + G V D + YN +I     +G+
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 434 LKEAVNVWNEMEAASL-------------------------------------------- 449
           L  A+++  EM ++ L                                            
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN 505

Query: 450 --SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
              P   ++ +++ G + +G  +EA E ++EM  RG++  P   T  ++++ L +  +++
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV--PDTITYSSMIDGLCKQSRLD 563

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A  ++  + +K    NV  +T  I+     G V +      +M    ++    T+  L+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 568 RGLKKLYNRQIAAEITEKV 586
            G +K+ N   A +I +++
Sbjct: 624 CGFRKVGNINGALDIFQEM 642



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 19/383 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I       ++     L++EM  RK  P ++T   +  L+  F       +A E+ D
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT---YNALINAFVKEGKFFEAEELYD 349

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  ++D  CK + +  A  +F  M  +   P+L  F +L+ G+C   
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +   +L +M + G   D   YN L+ G+  +G +  A +LL+EM   G  P+  +  
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-----------GCEADVVTYTTLISGFCKSRKIDR 366
            L+  LC   K+++A   F  M++S           G E DV TY  LISG     K   
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E+ + M  RGI+P+ +TY  ++    K+  L+E  ++   M      P+V  +  +I 
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + + + ++ EM    +     +++ ++ GF   G +  A + F+EM+  G+  
Sbjct: 590 GYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY- 648

Query: 487 APQYGTLKALLNSLLRAQKVEMA 509
            P   T++ +L  L   ++++ A
Sbjct: 649 -PDTITIRNMLTGLWSKEELKRA 670



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 182/409 (44%), Gaps = 4/409 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           L   F   + ++ AI++  +M +    P    F  L+  + +         L+ +M R++
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +  +  F  L+  +C   KL  A     ++   G  PD+V +  LL G     ++++A 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +M    C PN  ++T L+  LCR  ++ EA      M   G +   +TY T++ G 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 359 CKSRKIDRCYEILDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           CK         +L  M +   I+PN + Y  I+ +  K     +   L  EM++ G  PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN +I   C  G   +A  +  EM    +SP   ++  +++ F+ +G   EA E + 
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ RG++  P   T  ++++   +  +++ A+ ++  + TKGC  N+  +   I     
Sbjct: 350 EMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              + +      +M +  ++    T+  L+ G   + +   A ++ +++
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +     Y ++I    K  +  A   +   M  +   P LIT   F  L+  +  A+ 
Sbjct: 358 PNTI----TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLIT---FNTLIDGYCGAKR 410

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +   +E+L EM + G   D   +  L+        +  A  L  EM      P +    +
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDA 297
           LL G C  GKL +A  +   M+ +           G EPD+  YN L+SG    GK  +A
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            EL +EM  +G  P+  +Y+ +I  LC+  +++EA + F  M       +VVT+TTLI+G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           +CK+ ++D   E+   M +RGI+ N +TY+ ++    K   +   +++  EM   G  PD
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 418 -VSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++  N++  L  K  ELK AV +  +++ +
Sbjct: 651 TITIRNMLTGLWSK-EELKRAVAMLEKLQMS 680


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 207/442 (46%), Gaps = 15/442 (3%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
           V+++ GL  R          L +  ++ ASK  N   +   +  +IK++ ++        
Sbjct: 141 VIVQEGLFNRA---------LEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIE 191

Query: 160 LMEE--MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           +  E  +R   P   T   +  LM        + +A+ +LDEM   G  P+   F  L+ 
Sbjct: 192 VFREIPLRNCAPDNYT---YSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLIS 248

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           ALCK   +  AAKL D M  +   P+   + +L++G C +GKL +A  +L QM      P
Sbjct: 249 ALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVP 308

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + V +  L++G+   G+ +D   +L  +  +G   N   Y+ LI  LC+  K  +A   +
Sbjct: 309 NDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELW 368

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM   GC  + + Y+ LI G C+  K+D     L  M  +G LPN  TY  +M  + + 
Sbjct: 369 KEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEA 428

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            +  + + +  EM    C+ +   Y+++I   CK G+  EA+ VW +M +  +     ++
Sbjct: 429 GDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAY 488

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             M+HGF     + +  + F +M+ +G +  P   T   LLN+    + +  A D+ + +
Sbjct: 489 SSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIM 548

Query: 517 VTKGCELNVYAWTIWIHSLFSN 538
           + +GC+ +     I++ +L  N
Sbjct: 549 LDQGCDPDFITCDIFLKTLREN 570



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 217/464 (46%), Gaps = 43/464 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +LI+S +    F ++  ++ +M++E+ ++   + F+++ + +  A + +KA+++   M
Sbjct: 64  FYSLIESHASSLDFRSLEEVLHQMKRER-RVFLEKNFIVMFKAYGKAHLPEKAVDLFHRM 122

Query: 201 -PKYGCE--------------------------------------PDEFVFGCLLDALCK 221
             ++ C+                                      P+   F  ++ A+C+
Sbjct: 123 WGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCR 182

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
              V +A ++F E+  R   P    +++L++G CKE ++ EA  +L +M+  G  P++V 
Sbjct: 183 LGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVA 242

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           +N L+S   + G +  A +L+  M  KGC PN  +Y  L+  LC   K+E+A     +M 
Sbjct: 243 FNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMV 302

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            + C  + VT+ TLI+GF    +      +L S+  RG   N+  Y  ++    K+ +  
Sbjct: 303 SNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFN 362

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           + +EL  EM   GC P+   Y+ +I   C+ G+L EA    +EM+     P + ++  ++
Sbjct: 363 QAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLM 422

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G+   G   +A   +KEM     +      ++  L+N L +  K   A  VW  ++++G
Sbjct: 423 RGYFEAGDSHKAILVWKEMANNNCIHNEVCYSI--LINGLCKDGKFMEALMVWKQMLSRG 480

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
            +L+V A++  IH   +   V++       M+    + QPD   
Sbjct: 481 IKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVIT 524



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 5/292 (1%)

Query: 281 YNNLLSGYAQMGKMTDAFELLKEM---RRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +N++L+   Q G    A E    +   +     PNA ++ ++I+A+CR+  +++A   F 
Sbjct: 135 FNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFR 194

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           E+    C  D  TY+TL+ G CK  +ID    +LD M   G  PN + +  ++ A  KK 
Sbjct: 195 EIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKG 254

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L    +L+  M   GCVP+   YN ++   C  G+L++AV++ N+M +    P   +F 
Sbjct: 255 DLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFG 314

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            +++GF+ QG   +       +  RG     +Y    +L++ L +  K   A ++W  +V
Sbjct: 315 TLINGFVMQGRASDGTRVLVSLEARGH-RGNEY-VYSSLISGLCKEGKFNQAMELWKEMV 372

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            KGC  N   ++  I  L   G + EA  +  +M +   +P   T++ LMRG
Sbjct: 373 GKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRG 424



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 22/258 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN +    VY ALI  L +  K       + EM K K  L  +  +  LMR +  A    
Sbjct: 378 PNTI----VYSALIDGLCREGKLDEARGFLSEM-KNKGYLPNSFTYSSLMRGYFEAGDSH 432

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           KAI V  EM    C  +E  +  L++ LCK+    EA  ++ +M  R  K  +  ++S++
Sbjct: 433 KAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMI 492

Query: 251 YGWCKEGKLVEAKYVLVQMKDAG--FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +G+C    + +   +  QM   G   +PD++ YN LL+ +     +  A ++L  M  +G
Sbjct: 493 HGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQG 552

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           CDP+  +  + ++ L       +  R F++               L+    K ++     
Sbjct: 553 CDPDFITCDIFLKTLRENMNPPQDGREFLD--------------ELVVRLVKRQRTIGAS 598

Query: 369 EILDSMIQRGILPNQLTY 386
           +I++ M+ + +LP   T+
Sbjct: 599 KIIEVMMHKFLLPKASTW 616


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 3/321 (0%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           L+  LCK  +++EA +L  +M ER F      + +L+ G CKEGK+ E   +  +M   G
Sbjct: 497 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 556

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
            EPD   YN L+ G  ++GK+ +A  L  E + +   PN  +Y V+I   C+ +K+EE  
Sbjct: 557 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 616

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           + F E+     E + V Y TLI  +C++      +++ D M  +GI P   TY  ++   
Sbjct: 617 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGM 676

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
                +E+   L+ EMRK G +P+V  Y  +I   CKLG++ + VNV  EM +  + P  
Sbjct: 677 CNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNK 736

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++ VM+ G+   G +  A +   EMVG+G++  P   T   L N   +  K+E    + 
Sbjct: 737 ITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIV--PDTVTYNVLTNGFCKEGKIEEGFKIC 794

Query: 514 SCIVTKGCELNVYAWTIWIHS 534
             +  +G  L+   +T  +H 
Sbjct: 795 DYMSQEGLPLDEITYTTLVHG 815



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 209/461 (45%), Gaps = 47/461 (10%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V     Y  LI  L K       +   E+M K+     LIT   + +L+       
Sbjct: 278 SPNVV----TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLIT---YSVLINGLMKLE 330

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
              +A  VL E  + G  P+E V+  L+D  CK  ++ +A ++  +M  +   P+     
Sbjct: 331 KFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLN 390

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++ G+CK G++ +A+ +L +M   GF  +   +  ++       +   A   L+EM  +
Sbjct: 391 SIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLR 450

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN    T L+  LC+  K  +A   +  +   G  A++VT   LI G CK+  +   
Sbjct: 451 NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEA 510

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L  M++RG + +++TY  ++    K+ ++EE  +L GEM K G  PD   YN++I  
Sbjct: 511 VRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 570

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++G+L EAVN+WNE ++  L P   ++ VM+ G+                        
Sbjct: 571 MCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY------------------------ 606

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
                         +A K+E  + +++ ++T+  ELN   +   I +   NG+  EA   
Sbjct: 607 -------------CKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             DM    + P   T++ L+ G+  +   + A  + +++RK
Sbjct: 654 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRK 694



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 147/275 (53%), Gaps = 1/275 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V++  ++  EM K G EPD F +  L+  +C+   + EA  L++E + R   P++  +  
Sbjct: 542 VEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGV 601

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G+CK  K+ E + +  ++     E + VVYN L+  Y + G   +AF+L  +MR KG
Sbjct: 602 MIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKG 661

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P   +Y+ LI  +C + +ME+A     EM + G   +VV YT LI G+CK  ++D+  
Sbjct: 662 IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVV 721

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  M    I PN++TY  ++  + K  +++   +L+ EM   G VPD   YNV+    
Sbjct: 722 NVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGF 781

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           CK G+++E   + + M    L     ++  +VHG+
Sbjct: 782 CKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGW 816



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 37/379 (9%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
           + AI V   +   G  P       LL +L K + ++++  +F+ MR+   P +  F++ +
Sbjct: 194 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAI 253

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
             +CK GK+ +A  +   M+  G  P++V YNNL+ G  + G + +AF   ++M + G +
Sbjct: 254 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 313

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
               +Y+VLI  L ++EK  EAN    E    G   + V Y TLI G+CK   +     I
Sbjct: 314 ATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRI 373

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M+ +GI PN +T                                    N +I+  CK
Sbjct: 374 RGDMVSKGINPNSVT-----------------------------------LNSIIQGFCK 398

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G++++A  +  EM +   S    +F  ++H          A  + +EM+ R +   P  
Sbjct: 399 IGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNM--RPND 456

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
           G L  L+  L +  K   A ++W  ++ KG   N+      IH L   G+++EA      
Sbjct: 457 GLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKK 516

Query: 551 MMDADVMPQPDTFAKLMRG 569
           M++   +    T+  L+ G
Sbjct: 517 MLERGFVLDKITYNTLISG 535



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 2/157 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI  +  + +      L++EMRKE   L     +  L+  +     + K + VL EM
Sbjct: 669 YSSLIHGMCNIGRMEDAKCLIDEMRKEG-LLPNVVCYTALIGGYCKLGQMDKVVNVLQEM 727

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
             Y   P++  +  ++D   K+  +K AAKL  EM  +   P    +  L  G+CKEGK+
Sbjct: 728 SSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKI 787

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
            E   +   M   G   D + Y  L+ G+ Q   +T+
Sbjct: 788 EEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSALTN 824



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   F+ +  +G+   P   T   LL+SL++A ++E +  V+  +  +G   +VY ++  
Sbjct: 196 AIGVFRFLANKGVF--PTVKTCTFLLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTA 252

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           I++    G V++A     DM    V P   T+  L+ GL K  N   A    EK+ K
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK 309


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 198/384 (51%), Gaps = 3/384 (0%)

Query: 191 KKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           ++A+++L  M K  GC PD   +  ++  L     + +A  LF+EM ++   P++  + S
Sbjct: 253 QEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNS 312

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +++  CK   + +A+ VL QM D   +PD V Y  ++ GY+ +G+  +A ++ KEM R+G
Sbjct: 313 IVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREG 372

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  ++  L+ +LC+ ++ +EA   F  +   G + D+++Y+ L+ G+    +     
Sbjct: 373 LIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMN 432

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +  SM   GI+ +   +  ++ AH K+  ++E + +  EMR  G  P+V  Y  VI   
Sbjct: 433 NLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C++G L +A+   ++M +  L P T  +  ++ GF   G LI+A E   EM+ +G +  P
Sbjct: 493 CRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG-IPRP 551

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                 ++++SL    +V  A+DV++ ++  G   +++ +   I      G + +A    
Sbjct: 552 NITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVL 611

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
             M+ A   P   T++ L+ G  K
Sbjct: 612 DAMVSAGTEPDVVTYSTLINGYFK 635



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 191/445 (42%), Gaps = 44/445 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L    +      L  EM ++   P ++T    V        AR + KA  VL 
Sbjct: 275 YTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIV---HALCKARAMDKAELVLR 331

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M     +PDE  +  ++         KEAAK+F EM RE   P +  F SL+   CK  
Sbjct: 332 QMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHK 391

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA  +   +   G +PDI+ Y+ LL GYA  G+  D   L   M   G   +++ + 
Sbjct: 392 RSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFN 451

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI A  +   M+EA   F EM   G   +VVTY T+I+  C+  ++    E L  MI  
Sbjct: 452 ILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISI 511

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRK-------------------------- 411
           G+ PN + Y  ++       +L +  EL+ EM                            
Sbjct: 512 GLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMN 571

Query: 412 ----------IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                     IG  PD+  +N +I   C +G++ +A  V + M +A   P   ++  +++
Sbjct: 572 AQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLIN 631

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G+   G + +    F+EM+ + +   P   T   +L+ L RA +   AK ++  ++  G 
Sbjct: 632 GYFKSGRIDDGLILFREMLCKRV--KPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGT 689

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACS 546
            +++  +TI +  L  N    EA +
Sbjct: 690 AMSISTYTIILQGLCRNNCTDEAIT 714



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 192/413 (46%), Gaps = 13/413 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI + +K         +  EMR +   P ++T    +  + R      +  A+E L 
Sbjct: 450 FNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGR---LADAMEKLS 506

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKE 256
           +M   G +P+  V+  L+   C +  + +A +L  EM ++   +P++  F+S+++  C E
Sbjct: 507 QMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNE 566

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+++ A+ V   +   G  PDI  +N+L+ GY  +GKM  AF +L  M   G +P+  +Y
Sbjct: 567 GRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTY 626

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI    +  ++++    F EM     +   VTY+ ++ G  ++ +     ++   MI+
Sbjct: 627 STLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIE 686

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G   +  TY  I+    +    +E + L  ++  +    +++  N +I    K+   +E
Sbjct: 687 SGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREE 746

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A +++  + A+ L P   ++ VM+   L +G + EA   F  M   G   AP    L  +
Sbjct: 747 AHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTG--CAPSSRLLNDI 804

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI-WIHSLF-SNGHVKEACSY 547
           +  LL  QK E+ K  +      G  +++ A T   + SLF S G  +E   +
Sbjct: 805 IRMLL--QKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKGRYREQIKF 855



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 45/364 (12%)

Query: 217 DALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW-----CKEGKLVEAKYVLVQMK 270
           D++  + +   A  LF+ + RE   P +   T   YG      C+  +         ++ 
Sbjct: 133 DSVACSDAPALAVALFNRICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLL 192

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFE-LLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
            AG   D +V N  L       +  +A   LL  M   GC P+A SY  +I++LC   + 
Sbjct: 193 RAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRS 252

Query: 330 EEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +EA    + M +  GC  DVV+YT +I G     +I +   + + M+Q+G++PN +T   
Sbjct: 253 QEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVT--- 309

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
                                           YN ++   CK   + +A  V  +M   S
Sbjct: 310 --------------------------------YNSIVHALCKARAMDKAELVLRQMFDNS 337

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P   ++  M+HG+   G   EA + FKEM   GL+  P   T  +L++SL + ++ + 
Sbjct: 338 IQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLI--PDIVTFNSLMDSLCKHKRSKE 395

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A +++  I TKG + ++ +++I +H   + G   +  +    M D  ++     F  L+ 
Sbjct: 396 AAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILIN 455

Query: 569 GLKK 572
              K
Sbjct: 456 AHAK 459



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 119/276 (43%), Gaps = 37/276 (13%)

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
             ++Y +L+   CR  + +     F  + R+G   D +   T +   C +++ D   E L
Sbjct: 164 TVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTD---EAL 220

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             ++ R                               M ++GCVPD  +YN VI+  C  
Sbjct: 221 SMLLHR-------------------------------MSELGCVPDAFSYNTVIKSLCGG 249

Query: 432 GELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              +EA+++   M +    SP   S+ +++HG   +G + +AC  F EMV +G++  P  
Sbjct: 250 SRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVV--PNV 307

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +++++L +A+ ++ A+ V   +     + +   +T  IH     G  KEA     +
Sbjct: 308 VTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKE 367

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           M    ++P   TF  LM  L K    + AAEI   +
Sbjct: 368 MTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSI 403


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 189/394 (47%), Gaps = 4/394 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +LI  L K  +    + + E M  +  Q+    V+  L+R F      +   ++  EM +
Sbjct: 345 SLIDGLGKQGRVDDAYRIYERML-DADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMR 403

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
            GC PD  +    +D + K    ++   LF+E++ R F P  R ++ L++   K G   E
Sbjct: 404 SGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARE 463

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
              +   MKD G   D   YN ++ G+ + GK+  A++LL+EM+  G  P   +Y  ++ 
Sbjct: 464 TYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVD 523

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            L ++++++EA   F E + +G E + V Y++LI GF K  ++D  Y +++ M+Q+G+ P
Sbjct: 524 GLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTP 583

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  T+  ++    K EE+ E +     M+ + C P+   Y ++I   CK+ +  +A   W
Sbjct: 584 NVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFW 643

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM+   L P T ++  M+ G    G + +A   F+     G    P   +  A++  L 
Sbjct: 644 QEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASG--GIPDSASYNAMIEGLS 701

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            A +   A  ++     KGC ++       + +L
Sbjct: 702 IANRALDAYQLFEETRLKGCSIHTKTCVALLDAL 735



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 209/456 (45%), Gaps = 7/456 (1%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           ++  Y  LI +LS++ +   + AL  +M +E    +   +   L+R F+    V  A+ +
Sbjct: 60  AFSAYTTLIGALSEVGESDRMLALFNQM-QELGYEVNVHLLTTLIRVFSREGRVDAALSL 118

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           LDEM     + D  ++   +D   K   V  A K F EM+     P    +TS++   CK
Sbjct: 119 LDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCK 178

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             +L EA  +  QM+     P    YN ++ GY   GK  +A+ LL+  R KGC P+  +
Sbjct: 179 ANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVA 238

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  ++  L +  K ++A R F EM+R     ++ TY  +I   CK+  ++  +++ D+M 
Sbjct: 239 YNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMK 297

Query: 376 QRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           + G+ PN  T ++IM+    K ++L+E   +   M    C PD + +  +I    K G +
Sbjct: 298 EAGLFPNVRT-INIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRV 356

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            +A  ++  M  A   P    +  ++  F       +  + +KEM+  G   +P    L 
Sbjct: 357 DDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSG--CSPDLMLLN 414

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
             ++ + +A + E  + ++  I  +G   +  +++I IHSL   G  +E       M D 
Sbjct: 415 TYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQ 474

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
             +     +  ++ G  K      A ++ E+++ M 
Sbjct: 475 GCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMG 510



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 212/500 (42%), Gaps = 41/500 (8%)

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKP 169
           I+  G  G +   +  +   + N +   DV Y +++  L K  +      + E+M + + 
Sbjct: 138 IDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNR- 196

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           Q+     +  ++  + SA    +A  +L+     GC P    + C+L  L K     +A 
Sbjct: 197 QVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKAL 256

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG---------------- 273
           ++F+EM+    P+L  +  ++   CK G +  A  V   MK+AG                
Sbjct: 257 RIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLC 316

Query: 274 -----------FE--------PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
                      FE        PD   + +L+ G  + G++ DA+ + + M      PN  
Sbjct: 317 KAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVV 376

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            YT LI+   + ++ E+ ++ + EM RSGC  D++   T +    K+ + ++   + + +
Sbjct: 377 VYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEI 436

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             RG LP+  +Y  ++ +  K     E  EL   M+  GCV D   YN VI   CK G++
Sbjct: 437 KARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKV 496

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTL 493
            +A  +  EM+     P   ++  +V G      L EA   F+E    G+ L+   Y +L
Sbjct: 497 NKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSL 556

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
              ++   +  +V+ A  V   ++ KG   NVY W   +  L     + EA      M D
Sbjct: 557 ---IDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKD 613

Query: 554 ADVMPQPDTFAKLMRGLKKL 573
               P   T+  L+ GL K+
Sbjct: 614 LKCTPNQITYCILINGLCKV 633



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/511 (22%), Positives = 213/511 (41%), Gaps = 75/511 (14%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           LI+  S+  +  A  +L++EM+          ++ + +  F     V  A +   EM   
Sbjct: 102 LIRVFSREGRVDAALSLLDEMKSNTFDADIV-LYNVCIDCFGKVGKVDMAWKFFHEMKAN 160

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEA 262
           G  PD+  +  ++  LCK + + EA ++F++M + R  P    + +++ G+   GK  EA
Sbjct: 161 GLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEA 220

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK--------------- 307
             +L + +  G  P +V YN +L+   + GK   A  + +EM+R                
Sbjct: 221 YSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGML 280

Query: 308 -------------------GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
                              G  PN  +  ++I  LC+ +K++EA   F  M+   C  D 
Sbjct: 281 CKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDG 340

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            T+ +LI G  K  ++D  Y I + M+    +PN + Y  ++    K +  E+  ++  E
Sbjct: 341 ATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKE 400

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL---- 464
           M + GC PD+   N  +    K GE ++   ++ E++A    P T S+ +++H  +    
Sbjct: 401 MMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGF 460

Query: 465 ------------GQGCLIEACEYFKEMVG-----------------RGLLSAPQYGTLKA 495
                        QGC+++   Y   + G                 + +   P   T  +
Sbjct: 461 ARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGS 520

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +++ L +  +++ A  ++    + G ELN   ++  I      G V EA     +MM   
Sbjct: 521 VVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKG 580

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           + P   T+  L+ GL K      A EI E +
Sbjct: 581 LTPNVYTWNCLLDGLVK------AEEINEAL 605



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           AL EE+ K +  L  T  + IL+     A   ++  E+   M   GC  D   +  ++D 
Sbjct: 431 ALFEEI-KARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDG 489

Query: 219 LCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            CK+  V +A +L +EM+     P++  + S++ G  K  +L EA  +  + K  G E +
Sbjct: 490 FCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELN 549

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
            V+Y++L+ G+ ++G++ +A+ +++EM +KG  PN  ++  L+  L + E++ EA   F 
Sbjct: 550 QVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQ 609

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
            M+   C  + +TY  LI+G CK RK ++ +     M ++G+ PN +TY  ++    K  
Sbjct: 610 SMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSG 669

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
            + +   L    R  G +PD ++YN +I          +A  ++ E      S  T + V
Sbjct: 670 NVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCV 729

Query: 458 VMVHGFLGQGCLIEA 472
            ++       CL +A
Sbjct: 730 ALLDALHKAECLEQA 744



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 180/351 (51%), Gaps = 4/351 (1%)

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
           +R + +A ++L  M  +   P    +  L+ AL +         LF++M+E  ++ ++  
Sbjct: 39  SRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHL 98

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
            T+L+  + +EG++  A  +L +MK   F+ DIV+YN  +  + ++GK+  A++   EM+
Sbjct: 99  LTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMK 158

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             G  P+  +YT ++  LC+  +++EA   F +ME++        Y T+I G+  + K D
Sbjct: 159 ANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFD 218

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             Y +L+    +G +P+ + Y  I+    KK + ++ + +  EM++   +P++  YN++I
Sbjct: 219 EAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR-DAMPNLPTYNIII 277

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            + CK G ++ A  V + M+ A L P   +  +M+        L EAC  F+ M  +  +
Sbjct: 278 GMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYK--V 335

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            +P   T  +L++ L +  +V+ A  ++  ++      NV  +T  I + F
Sbjct: 336 CSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFF 386



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 181/379 (47%), Gaps = 4/379 (1%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGW 253
           ++L EM   G  P  +    L+ +  K+  + EA  L   MR  +F+P+   +T+L+   
Sbjct: 12  QILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGAL 71

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            + G+      +  QM++ G+E ++ +   L+  +++ G++  A  LL EM+    D + 
Sbjct: 72  SEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADI 131

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
             Y V I    ++ K++ A + F EM+ +G   D VTYT+++   CK+ ++D   EI + 
Sbjct: 132 VLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQ 191

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M Q   +P    Y  +++ +    + +E   L+   R  GC+P V  YN ++    K G+
Sbjct: 192 MEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGK 251

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             +A+ ++ EM+  ++ P   ++ +++      G +  A +    M   GL   P   T+
Sbjct: 252 TDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLF--PNVRTI 308

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             +++ L +AQK++ A  ++  +  K C  +   +   I  L   G V +A      M+D
Sbjct: 309 NIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLD 368

Query: 554 ADVMPQPDTFAKLMRGLKK 572
           AD +P    +  L+R   K
Sbjct: 369 ADQIPNVVVYTSLIRNFFK 387



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 127/283 (44%), Gaps = 7/283 (2%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVI 179
           Y  Y +A K    V     Y  +I    K  K    + L+EEM+     P ++T   +  
Sbjct: 465 YELY-YAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVT---YGS 520

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++   A    + +A  + +E    G E ++ ++  L+D   K   V EA  + +EM ++ 
Sbjct: 521 VVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKG 580

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P++  +  LL G  K  ++ EA      MKD    P+ + Y  L++G  ++ K   AF
Sbjct: 581 LTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAF 640

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
              +EM+++G  PN  +YT +I  L +   + +A+  F     SG   D  +Y  +I G 
Sbjct: 641 VFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGL 700

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
             + +    Y++ +    +G   +  T + ++ A  K E LE+
Sbjct: 701 SIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQ 743


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 207/424 (48%), Gaps = 22/424 (5%)

Query: 70  FSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVI------NRCGDAGNLG-- 121
            SHDV  +  ++  F  RL  ++      G +++ GL   VI      N     G +G  
Sbjct: 122 ISHDVLSLTILINCF-CRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRA 180

Query: 122 ---YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEV 176
              +   +    +PN VHSY +   +IK L ++ K   V  L+E M+    +P ++   +
Sbjct: 181 IELFDVMVARGYKPN-VHSYSI---IIKGLCRVGKTTEVIKLLEHMKVVGCEPDVV---I 233

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  ++ R    R+V +A+ +  +M   G  P    +  L+  L      KEA  L +EM+
Sbjct: 234 YNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK 293

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
                P L  F+ L+   CKEG++ EA+ +L  M + G EPD+  YN L++GY    ++ 
Sbjct: 294 GGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVV 353

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A ++ + M  KG  P+  S+++L+   C+ ++++EA + F EM   G   D V+Y TLI
Sbjct: 354 EARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLI 413

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           SG C++R+     E+   M   G  PN +TY  ++    K+  L++ + L   M   G  
Sbjct: 414 SGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLK 473

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD+  YN++I   CK G+ K+A  ++ E+    L P        + G    G L EA + 
Sbjct: 474 PDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKA 533

Query: 476 FKEM 479
           F++M
Sbjct: 534 FRQM 537



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 205/442 (46%), Gaps = 43/442 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF--VILMRRFASARMVKKAIEVLD 198
           +  L  +L +M+ +  V +L ++M       I+ +V    IL+  F     V     VL 
Sbjct: 94  FGELFSALVRMKHYKTVVSLSKQMEMAG---ISHDVLSLTILINCFCRLCHVDYGFSVLG 150

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++ K G EP+   F  L++  C    +  A +LFD M  R +KP++  ++ ++ G C+ G
Sbjct: 151 KIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVG 210

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYN----------------------------------- 282
           K  E   +L  MK  G EPD+V+YN                                   
Sbjct: 211 KTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYT 270

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L+ G   +G+  +AF LL EM+     P+  +++VLI  +C+  ++ EA      M   
Sbjct: 271 SLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEM 330

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G E DV TY TL++G+C   ++    ++ + MI +G +P+  ++  ++  + K + ++E 
Sbjct: 331 GVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEA 390

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +L  EM   G +PD  +YN +I   C+     EA  ++ +M +    P   ++ +++  
Sbjct: 391 KQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDC 450

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              QG L +A   F+ M   GL   P   T   +++ + +  K + A+++++ +  KG +
Sbjct: 451 LSKQGYLDQAMGLFRAMENSGL--KPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQ 508

Query: 523 LNVYAWTIWIHSLFSNGHVKEA 544
            N +  T  I  +   G + EA
Sbjct: 509 PNNWVCTPTIDGVCKGGLLDEA 530



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 179/386 (46%), Gaps = 3/386 (0%)

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHF 246
           R +  A+   + M      P    FG L  AL +    K    L  +M        +   
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T L+  +C+   +     VL ++   G EP+++ ++ L++G+   GK+  A EL   M  
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +G  PN +SY+++I+ LCR+ K  E  +    M+  GCE DVV Y T++   CK R ++ 
Sbjct: 190 RGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNE 249

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              I   M   GILP  +TY  ++         +E   L+ EM+    +PD+  ++V+I 
Sbjct: 250 AVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLID 309

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + CK GE+ EA  +   M    + P   ++  +++G+  +  ++EA + F+ M+ +G + 
Sbjct: 310 IMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRM- 368

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   +   L+N   +A++++ AK ++  +  +G   +  ++   I  L       EA  
Sbjct: 369 -PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEE 427

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKK 572
              DM      P   T++ L+  L K
Sbjct: 428 LFKDMHSNGYPPNLVTYSILLDCLSK 453



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 35/278 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRR---FASARMVKKAI- 194
           Y +LI  L  + ++   + L+ EM+     P L+   V + +M +    + AR++ K + 
Sbjct: 269 YTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMT 328

Query: 195 ----------------------------EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
                                       +V + M   G  PD F F  L++  CK   + 
Sbjct: 329 EMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRID 388

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           EA +LFDEM  R   P    + +L+ G C+  + +EA+ +   M   G+ P++V Y+ LL
Sbjct: 389 EAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILL 448

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
              ++ G +  A  L + M   G  P+  +Y ++I  +C+  K ++A   F E+   G +
Sbjct: 449 DCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQ 508

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
            +    T  I G CK   +D  ++    M +    P Q
Sbjct: 509 PNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQ 546



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 120/302 (39%), Gaps = 37/302 (12%)

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + DA      M      P+   +  L  AL RM+  +       +ME +G   DV++ T 
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI+ FC+   +D  + +L  +I+ G+ PN +T+  ++     + ++   +EL   M   G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             P+V +Y+++I+  C++G+  E + +   M+     P    +  +V        + EA 
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAV 251

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             F +M G G+L                                       V  +T  IH
Sbjct: 252 HIFCKMKGTGILPT-------------------------------------VVTYTSLIH 274

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593
            L + G  KEA     +M   ++MP    F+ L+  + K      A  I + + +M  E 
Sbjct: 275 GLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEP 334

Query: 594 QI 595
            +
Sbjct: 335 DV 336



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 2/212 (0%)

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
           R I+      + M+    LP+ + +  +  A  + +  +  V L  +M   G   DV + 
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            ++I   C+L  +    +V  ++    L P   +F  +++GF  +G +  A E F  MV 
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
           RG    P   +   ++  L R  K      +   +   GCE +V  +   +  L  +  V
Sbjct: 190 RGY--KPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLV 247

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            EA      M    ++P   T+  L+ GL+ L
Sbjct: 248 NEAVHIFCKMKGTGILPTVVTYTSLIHGLRNL 279


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 197/414 (47%), Gaps = 10/414 (2%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           SG+ L   + + ++ + GD       ++ WA  + +Y H+      ++  L KMR+   +
Sbjct: 42  SGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQM 101

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           W L+ +M      L+T E     +RR A AR  K  + + D++   G E +      LLD
Sbjct: 102 WELLSDMHGRG--LVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 159

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   ++ A ++F  +     P    F   ++GWC   ++ EA + + +MK  GF P 
Sbjct: 160 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 219

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y  +L  Y +       +E+L  M  +GC PN  +YT+++ +L + E+ EEA     
Sbjct: 220 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSH 279

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKK 396
            M+ SGC+ D + Y +LI+   KS  +    ++    M   G+  N  TY  ++      
Sbjct: 280 RMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYY 339

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRL-ACKLGELKEAVNVWNEMEAA-SLSPGTD 454
              ++ + ++ EM    C PD+ +Y  ++RL   + G+     ++ +E+ +  +L    D
Sbjct: 340 GRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLD 399

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           ++ +++HG    G  + A + F EMV   +  AP+  T   LL+    AQ+  M
Sbjct: 400 TYTLLIHGLCRVGDTVWAYQLFDEMVSSEI--APRSKTCVMLLD---EAQRTNM 448



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 102/263 (38%), Gaps = 39/263 (14%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++    +M ++   +ELL +M  +G      +    I+ L    + ++    F ++E 
Sbjct: 86  NRMVDLLGKMRQIDQMWELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLED 144

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G E +  T   L+   CK RKI+   E+  +++   I P+  T+   +        ++E
Sbjct: 145 MGLERNTETMNVLLDVLCKERKIEVAREVF-AVLSPHIPPDAYTFNIFVHGWCSIRRIDE 203

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            +  + EM++ G  P V  Y  V+   CK    +    V + M +               
Sbjct: 204 AMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGS--------------- 248

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               QGC                   P   T   ++ SL + ++ E A  V   + + GC
Sbjct: 249 ----QGC------------------HPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGC 286

Query: 522 ELNVYAWTIWIHSLFSNGHVKEA 544
           + +   +   I+ L  +GH+ EA
Sbjct: 287 KPDTLFYNSLINLLGKSGHLFEA 309


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 222/481 (46%), Gaps = 7/481 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLG-YRYYMWASKQP 132
           V    R+L+   S   KLE  L+H    + P     V+           + ++ WA +Q 
Sbjct: 61  VRDTCRLLELRDSWSAKLEAQLRHLLRAMTPSQVRAVLRAQAQRDARAAFEFFRWADRQW 120

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVK 191
            Y H+ +V+  ++  LS+ R       +M  M R+  P+   T  F  LM  ++ A  ++
Sbjct: 121 KYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPR--GTRQFAHLMLSYSRAGKLR 178

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLL 250
            A+ VL  M K GC PD  +    ++ L     + +A +  + MR     P +  +  L+
Sbjct: 179 SAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLI 238

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C   ++V+A  ++  M   G  PD + Y  ++S   +  ++ D   LL+ M   G  
Sbjct: 239 KGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIF 298

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +Y +LI  L +    +EA     E E      D V Y+  +  FC + ++    EI
Sbjct: 299 PDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEI 358

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  MI +G  P+ +TY  ++    +  EL++  ++M  M K GC P+   +  ++   CK
Sbjct: 359 IGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCK 418

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G+  EA  + N+ E    +P   ++ V++HGF  +G L E+C+   +M+ +G    P  
Sbjct: 419 VGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFF--PTT 476

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
             +  L+++L   +K   AKD      +KGC +NV  +T  IH     G ++ A S   D
Sbjct: 477 VEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDD 536

Query: 551 M 551
           M
Sbjct: 537 M 537



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 187/398 (46%), Gaps = 21/398 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LIK L   R+      ++  M +    P  I+   +  +M      + V     +L
Sbjct: 233 TYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKIS---YFTVMSFLCKEKRVADVQNLL 289

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
           + M   G  PD+  +  L+  L K+    EA     E   +RF+     +++ ++ +C  
Sbjct: 290 ERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLN 349

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ EAK ++ +M   G  PD+V Y+ ++ G+ ++G++  A +++K M + GC PN  ++
Sbjct: 350 GRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTH 409

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T L+  LC++ K  EA     + E        +TY+ ++ GF +  K+    +++  M+Q
Sbjct: 410 TALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQ 469

Query: 377 RGILPN--QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           +G  P   ++  L   L +E+K    +  + M + +  GC  +V N+  VI    + G+L
Sbjct: 470 KGFFPTTVEINLLIHALCNERKP--ADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDL 527

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP------ 488
           + A+++ ++M   +  P   ++ V+V     +G + EA    ++M+ RGL   P      
Sbjct: 528 ESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTV 587

Query: 489 -----QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                + G ++ LLN L +    E     ++ ++ K C
Sbjct: 588 IHRYCEKGAVEDLLNLLDKMLAKEGFSSAYNQVIEKLC 625



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 38/330 (11%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           +A E++ EM   GC PD   +  ++D  C+   + +A K+   M +   KP+    T+LL
Sbjct: 354 EAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALL 413

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK GK  EA  +L + ++  + P  + Y+ ++ G+ + GK+ ++ +++ +M +KG  
Sbjct: 414 NGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFF 473

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P      +LI ALC   K  +A     + +  GC  +VV +TT+I GF +   ++    +
Sbjct: 474 PTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSL 533

Query: 371 LDSM-----------------------------------IQRGILPNQLTYLHIMLAHEK 395
           LD M                                   + RG+ P  +TY  ++  + +
Sbjct: 534 LDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCE 593

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           K  +E+ + L+ +M  +      S YN VI   C  G+L EA N+ +++   +      +
Sbjct: 594 KGAVEDLLNLLDKM--LAKEGFSSAYNQVIEKLCAFGKLSEANNLLSKVLRTASKRDAQT 651

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             +++  FL +G  +++      M  R L+
Sbjct: 652 CHILMDSFLNRGLPLQSYNVACRMFQRNLI 681



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 123/290 (42%), Gaps = 47/290 (16%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     + AL+  L K+ K    W L+ +  +E   P  IT   + ++M  F    
Sbjct: 403 KPNTV----THTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAIT---YSVVMHGFRREG 455

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +K++ +V+ +M + G  P       L+ ALC      +A    ++ + +    ++ +FT
Sbjct: 456 KLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFT 515

Query: 248 SLLYGWCKEG-----------------------------------KLVEAKYVLVQMKDA 272
           ++++G+ ++G                                   K+ EA  ++ +M + 
Sbjct: 516 TVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNR 575

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  P  V Y  ++  Y + G + D   LL +M  K  +  +++Y  +I+ LC   K+ EA
Sbjct: 576 GLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLAK--EGFSSAYNQVIEKLCAFGKLSEA 633

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           N    ++ R+  + D  T   L+  F       + Y +   M QR ++P+
Sbjct: 634 NNLLSKVLRTASKRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLIPD 683


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 213/435 (48%), Gaps = 14/435 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           Y+ +   Y  LIK L    +      L   M+K    P  +T   +  L++       V 
Sbjct: 157 YIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVT---YGTLIKGLCQTGNVN 213

Query: 192 KAI----EVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
            A+    E+L++  +YG  C+P    +  ++D LCK     EA +LF+EM+ +   P + 
Sbjct: 214 IALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVI 273

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +++L++G+C  GK  ++K++  +M D G +PD+V ++ L+    + GK+T+A +LL+ M
Sbjct: 274 SYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVM 333

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            ++G  PN  +Y  LI   C +  +  A   F+ M   G E D ++YTTLI+G+CK+ K+
Sbjct: 334 IQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKV 393

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
                + + M+Q G  PN  TY  ++    +K ++ +  +L G M+  G   +   Y + 
Sbjct: 394 KEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIF 453

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +   CK   L EA+ ++NE+++ +     +++  ++ G    G L  A E F+++   GL
Sbjct: 454 LDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGL 513

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   +++   +  +V+ A  ++  +   GC  ++ A+   +        ++E 
Sbjct: 514 --QPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEV 571

Query: 545 CSYCLDMMDADVMPQ 559
                 M+  DV P 
Sbjct: 572 IKLLHKMVQKDVSPN 586



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 135/541 (24%), Positives = 233/541 (43%), Gaps = 70/541 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+  L+K+  +  +++L  EMR     P L T     IL     +   V +A+  + 
Sbjct: 94  FNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLS---ILANCLCNVNRVSEALAAMA 150

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            + + G  P+   +  L+  LC    + EA +LF  M++    P+   + +L+ G C+ G
Sbjct: 151 GILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTG 210

Query: 258 KL-VEAKYVLVQMKDA-----GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            + +  K     + DA       +P ++ Y+ ++ G  ++G+  +A EL +EM+ +G  P
Sbjct: 211 NVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIP 270

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  SY+ LI   C   K +++   F EM   G + D+VT++ LI   CK  K+    ++L
Sbjct: 271 DVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLL 330

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + MIQRGI+PN +TY  ++       +L    EL   M   G  PD  +Y  +I   CK 
Sbjct: 331 EVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKT 390

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG------------------------ 467
            ++KEA+N++NEM     SP   ++  ++ G   +G                        
Sbjct: 391 WKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIY 450

Query: 468 -----------CLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
                      CL EA E F E+      L+   Y     L++ L +A K+E A +++  
Sbjct: 451 GIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY---SCLIDGLCKAGKLETAWELFEK 507

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG------ 569
           +  +G + +V  + I IH     G V  A      M +    P    +  L+ G      
Sbjct: 508 LSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNK 567

Query: 570 ---LKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQR 626
              + KL ++ +  +++      AA   I   M  +       EK KK VD   +   QR
Sbjct: 568 LEEVIKLLHKMVQKDVSPN----AASCTIVVDMLCK------DEKYKKFVDLLPKFPVQR 617

Query: 627 R 627
            
Sbjct: 618 H 618



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 177/360 (49%), Gaps = 11/360 (3%)

Query: 220 CKNSSVK--EAAKLFD-EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           CK  ++   +A   FD  MR    P +  F  LL G  K     +   +  +M+ AG  P
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D+   + L +    + ++++A   +  + R+G  PN  +YT LI+ LC   ++ EA R F
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCY----EILDSMIQRGI--LPNQLTYLHIM 390
           + M++ GC  + VTY TLI G C++  ++       E+L+   Q G+   P  +TY  I+
Sbjct: 185 LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIII 244

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               K    +E  EL  EM+  G +PDV +Y+ +I   C  G+  ++ ++++EM    + 
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   +F V++     +G + EA +  + M+ RG++  P   T  +L++       +  A+
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIV--PNLITYNSLIDGFCMVGDLNSAR 362

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +++  + +KG E +  ++T  I+       VKEA +   +M+     P   T+  L++GL
Sbjct: 363 ELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 158/313 (50%), Gaps = 10/313 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QP+ V     +  LI +L K  K      L+E M  R   P LIT   +  L+  F    
Sbjct: 304 QPDMV----TFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLIT---YNSLIDGFCMVG 356

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFT 247
            +  A E+   MP  G EPDE  +  L++  CK   VKEA  L++EM +  K P++  + 
Sbjct: 357 DLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYG 416

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +LL G  ++GK+ +AK +   MK  G   +  +Y   L G  +   + +A EL  E++  
Sbjct: 417 TLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSY 476

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
               N  +Y+ LI  LC+  K+E A   F ++ + G + DVVTY  +I GFCK  ++D  
Sbjct: 477 NFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNA 536

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             + + M + G  P+ + Y  ++    +  +LEE ++L+ +M +    P+ ++  +V+ +
Sbjct: 537 NILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDM 596

Query: 428 ACKLGELKEAVNV 440
            CK  + K+ V++
Sbjct: 597 LCKDEKYKKFVDL 609



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 125/312 (40%), Gaps = 48/312 (15%)

Query: 272 AGFEPDIVVYNNLLSGY---AQMGKMT--DAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
           A F  + + +++ LS +    + G +T   AF     M R    P  +S+  L+  L ++
Sbjct: 45  AAFNREEISFHHPLSLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKI 104

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               +    + EM  +G   D+ T + L +  C   ++      +  +++RG +PN +TY
Sbjct: 105 NHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTY 164

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM-- 444
             ++     +  + E   L   M+K+GC P+   Y  +I+  C+ G +  A+ +  EM  
Sbjct: 165 TTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLN 224

Query: 445 ----EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
                  +  PG  ++ +++ G    G   EA E F+EM  +G++               
Sbjct: 225 DASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIP-------------- 270

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
                                  +V +++  IH     G   ++     +M+D  V P  
Sbjct: 271 -----------------------DVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDM 307

Query: 561 DTFAKLMRGLKK 572
            TF+ L+  L K
Sbjct: 308 VTFSVLIDTLCK 319


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 197/414 (47%), Gaps = 10/414 (2%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           SG+ L   + + ++ + GD       ++ WA  + +Y H+      ++  L KMR+   +
Sbjct: 76  SGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQM 135

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           W L+ +M      L+T E     +RR A AR  K  + + D++   G E +      LLD
Sbjct: 136 WELLSDMHGRG--LVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 193

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   ++ A ++F  +     P    F   ++GWC   ++ EA + + +MK  GF P 
Sbjct: 194 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 253

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y  +L  Y +       +E+L  M  +GC PN  +YT+++ +L + E+ EEA     
Sbjct: 254 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSH 313

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKK 396
            M+ SGC+ D + Y +LI+   KS  +    ++    M   G+  N  TY  ++      
Sbjct: 314 RMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYY 373

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRL-ACKLGELKEAVNVWNEMEAA-SLSPGTD 454
              ++ + ++ EM    C PD+ +Y  ++RL   + G+     ++ +E+ +  +L    D
Sbjct: 374 GRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLD 433

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           ++ +++HG    G  + A + F EMV   +  AP+  T   LL+    AQ+  M
Sbjct: 434 TYTLLIHGLCRVGDTVWAYQLFDEMVSSEI--APRSKTCVMLLD---EAQRTNM 482



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 102/263 (38%), Gaps = 39/263 (14%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++    +M ++   +ELL +M  +G      +    I+ L    + ++    F ++E 
Sbjct: 120 NRMVDLLGKMRQIDQMWELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLED 178

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G E +  T   L+   CK RKI+   E+  +++   I P+  T+   +        ++E
Sbjct: 179 MGLERNTETMNVLLDVLCKERKIEVAREVF-AVLSPHIPPDAYTFNIFVHGWCSIRRIDE 237

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            +  + EM++ G  P V  Y  V+   CK    +    V + M +               
Sbjct: 238 AMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGS--------------- 282

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               QGC                   P   T   ++ SL + ++ E A  V   + + GC
Sbjct: 283 ----QGC------------------HPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGC 320

Query: 522 ELNVYAWTIWIHSLFSNGHVKEA 544
           + +   +   I+ L  +GH+ EA
Sbjct: 321 KPDTLFYNSLINLLGKSGHLFEA 343


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 149/560 (26%), Positives = 235/560 (41%), Gaps = 83/560 (14%)

Query: 68  NEFSHDV-EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYM 126
           +EF H V  ++ R++    +  P  E  L+H    L+P L   V+    D   +   ++ 
Sbjct: 130 SEFRHPVVREVCRLITLSSAWNPNFEGRLRHLLRSLKPPLVCAVLRSQADE-RVALNFFY 188

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKF-GA--VWALMEEMRKEKPQLITTEVFVILMRR 183
           WA +Q  Y H   VY  ++  LSK +   GA  V  LM     E P     E F  +M  
Sbjct: 189 WADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECP----PEAFGYVMVS 244

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           ++ A  ++ A+ VL  M K G EP   +    +  L K   +++A K  + M+    KP 
Sbjct: 245 YSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPD 304

Query: 243 LRHFTSLLYGW-----------------------------------CKEGKLVEAKYVLV 267
           +  + SL+ G+                                   CKE K+ E K ++ 
Sbjct: 305 IVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLME 364

Query: 268 QMK-DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
           +M  ++   PD V YN L+   ++ G   DA   LKE + KG   +   Y+ ++ + C+ 
Sbjct: 365 KMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQK 424

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            +M+EA    ++M   GC  DVVTYT ++ GFC+  +ID   +IL  M + G  PN ++ 
Sbjct: 425 GRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVS- 483

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
                                             Y  ++   C  G+  EA  + N  E 
Sbjct: 484 ----------------------------------YTALLNGLCHSGKSLEAREMINVSEE 509

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
              +P   ++  ++HG   +G L EAC+  +EMV +G    P    +  L+ SL + QKV
Sbjct: 510 HWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPV--EINLLIQSLCQNQKV 567

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             AK      + KGC +NV  +T  IH     G ++ A S   DM  +   P   T+  L
Sbjct: 568 VEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTAL 627

Query: 567 MRGLKKLYNRQIAAEITEKV 586
              L K      AAE+  K+
Sbjct: 628 FDALGKKGRLDEAAELIVKM 647



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/437 (21%), Positives = 200/437 (45%), Gaps = 53/437 (12%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S  +    I  L K  K       +E M+    KP ++T   +  L++ +     ++ A+
Sbjct: 269 SLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVT---YNSLIKGYCDLNRIEDAL 325

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKP------SLRH- 245
           E++  +P  GC PD+  +  ++  LCK   ++E   L ++M       P      +L H 
Sbjct: 326 ELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHM 385

Query: 246 ----------------------------FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
                                       ++++++ +C++G++ EAK +++ M   G  PD
Sbjct: 386 LSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPD 445

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V Y  ++ G+ ++G++ +A ++L++M + GC PN  SYT L+  LC   K  EA     
Sbjct: 446 VVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMIN 505

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
             E      + +TY  ++ G  +  K+    ++   M+++G  P  +    ++ +  + +
Sbjct: 506 VSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQ 565

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           ++ E  + + E    GC  +V N+  VI   C++G+++ A++V ++M  +   P   ++ 
Sbjct: 566 KVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYT 625

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-----------QYGTLKALLNSLLRAQKV 506
            +      +G L EA E   +M+ +GL   P           Q+G +  +LN L +  K 
Sbjct: 626 ALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKR 685

Query: 507 EMAKDVWSCIVTKGCEL 523
           +  + V++ ++ K C+ 
Sbjct: 686 QPFRTVYNQVIEKLCDF 702



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 169/380 (44%), Gaps = 39/380 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++ S  +  +     +L+ +M  R   P ++T   +  ++  F     + +A ++L 
Sbjct: 414 YSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVT---YTAIVDGFCRLGRIDEAKKILQ 470

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M K+GC+P+   +  LL+ LC +    EA ++ +   E +  P+   + ++++G  +EG
Sbjct: 471 QMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREG 530

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL EA  +  +M + GF P  V  N L+    Q  K+ +A + L+E   KGC  N  ++T
Sbjct: 531 KLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFT 590

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I   C++  ME A     +M  SG   D VTYT L     K  ++D   E++  M+ +
Sbjct: 591 TVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSK 650

Query: 378 GILPNQLTY----------------LHIMLAHEKKE-----------------ELEECVE 404
           G+ P  +TY                L+++    K++                  LEE  +
Sbjct: 651 GLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQPFRTVYNQVIEKLCDFGNLEEAEK 710

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+G++ +     D +  +V++    K G    A  V   M   +L+P       +    +
Sbjct: 711 LLGKVLRTASKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTPDLKLCEKVSKKLV 770

Query: 465 GQGCLIEACEYFKEMVGRGL 484
             G L+EA       V RG+
Sbjct: 771 LDGKLVEADNLMLRFVERGI 790



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 4/270 (1%)

Query: 114 CGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT 173
           C    +L  R  +  S++  +  +   Y A++  L +  K      L  EM  EK    T
Sbjct: 492 CHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREM-VEKGFFPT 550

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
                +L++     + V +A + L+E    GC  +   F  ++   C+   ++ A  + D
Sbjct: 551 PVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLD 610

Query: 234 EMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           +M    K P    +T+L     K+G+L EA  ++V+M   G +P  V Y +++  Y+Q G
Sbjct: 611 DMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWG 670

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           ++ D   LL++M ++   P    Y  +I+ LC    +EEA +   ++ R+  + D  T  
Sbjct: 671 RVDDMLNLLEKMLKR--QPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCH 728

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            L+  + K       Y++   M +R + P+
Sbjct: 729 VLMESYLKKGVAISAYKVACRMFRRNLTPD 758



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 50/317 (15%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNANSYTVLIQALCRMEKMEEANRAF 336
           VVY  +L   ++      A  +L+ M R+G  C P A  Y ++  +  R  K+  A R  
Sbjct: 201 VVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMV--SYSRAGKLRNALRVL 258

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             M+++G E  +    T I    K  K+++  + L+ M   GI P+ +TY  ++  +   
Sbjct: 259 TLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDL 318

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV-----NVWNEMEAASLSP 451
             +E+ +EL+  +   GC PD  +Y  V+   CK  +++E        VWN    ++L P
Sbjct: 319 NRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWN----SNLIP 374

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  ++H     G   +A  + KE                              A+D
Sbjct: 375 DQVTYNTLIHMLSKHGHADDALAFLKE------------------------------AQD 404

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
                  KG  ++   ++  +HS    G + EA S  +DM      P   T+  ++ G  
Sbjct: 405 -------KGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFC 457

Query: 572 KLYNRQIAAEITEKVRK 588
           +L     A +I +++ K
Sbjct: 458 RLGRIDEAKKILQQMYK 474


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 184/373 (49%), Gaps = 5/373 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L K+  F   + L+  MR ++ +      +  ++        V++A E++++M
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAI-AYSTIINWLCKLNRVEEARELIEKM 106

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +Y   PD   +G +++ LCK   + +A    +EM  R  KP    +  +L G C+E K+
Sbjct: 107 ARYA-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 165

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA+ +  +M      P++V YN L++G  +  ++  A+EL KEM  KG  P   SY  L
Sbjct: 166 EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 225

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+ + +  A   F +M RS C  +VVTYTTLI G  KS K+    E+LD M+++G+
Sbjct: 226 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 285

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  TY  ++    K   ++E  +L+ +M   G  P V  YN+++   C+  +L++A  
Sbjct: 286 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFK 345

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  M      P   ++  ++        L  A   + EM+ +G    P   T   L   
Sbjct: 346 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG--CPPDAITYDTLAWG 403

Query: 500 LLRAQKVEMAKDV 512
           L RA KV  A+++
Sbjct: 404 LTRAGKVHEAQEL 416



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 174/340 (51%), Gaps = 3/340 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I  L K+ +      L+E+M +  P    T  +  ++ R    + +  A+  ++EM
Sbjct: 83  YSTIINWLCKLNRVEEARELIEKMARYAPPDALT--YGPIVERLCKTKRIDDALATVEEM 140

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G +PD F++  +L  LC+   V+EA  LF++M ++R  P++  + +L+ G CK  ++
Sbjct: 141 ATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRI 200

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +  +M   G+ P  V YN L+ G+ +   +  A ++  +M R  C PN  +YT L
Sbjct: 201 ETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTL 260

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L +  K++ A      M + G   +V TY+ LI GFCK R++D  +++L+ M+ +GI
Sbjct: 261 IDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 320

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P  +TY  ++ +  + ++LE+  +L   M +  C P V  YN ++R  C   +L  A  
Sbjct: 321 APTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHR 380

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
           ++ EM A    P   ++  +  G    G + EA E  ++M
Sbjct: 381 LYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 202/405 (49%), Gaps = 4/405 (0%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPS 242
           FA A  +++  EV   M + G       +G L+  LCK  +  EA KL   MR +RFK  
Sbjct: 20  FAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRK 79

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              +++++   CK  ++ EA+ ++ +M      PD + Y  ++    +  ++ DA   ++
Sbjct: 80  AIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERLCKTKRIDDALATVE 138

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM  +G  P+A  Y  ++  LC+ EK+EEA   F +M +     +VVTY TLI+G CK+ 
Sbjct: 139 EMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAW 198

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +I+  YE+   M  +G +P +++Y  ++    KK++L    ++  +M +  CVP+V  Y 
Sbjct: 199 RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYT 258

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I    K G+++ A  V + M    ++P   ++  ++ GF     + EA +  ++MV +
Sbjct: 259 TLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ 318

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G+  AP   T   LLNSL RA K+E A  ++  +  + C   V  +   + +L  +  + 
Sbjct: 319 GI--APTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 376

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            A     +M+     P   T+  L  GL +      A E+ EK++
Sbjct: 377 GAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 3/333 (0%)

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           R  P    F ++  G+ K G+L + K V   M +AG+      Y  L+S   ++G   +A
Sbjct: 5   RVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEA 64

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           ++LL  MR K     A +Y+ +I  LC++ ++EEA     +M R     D +TY  ++  
Sbjct: 65  YKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVER 123

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK+++ID     ++ M  RGI P+   Y  ++    ++E++EE   L  +M K    P+
Sbjct: 124 LCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPN 183

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN +I   CK   ++ A  ++ EM      P   S+  ++ GF  +  L+ A + F 
Sbjct: 184 VVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFD 243

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           +MV    +  P   T   L++ L ++ KV+ A +V   +V KG   NV  ++  I     
Sbjct: 244 KMVRSNCV--PNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 301

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              V EA      M+   + P   T+  L+  L
Sbjct: 302 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 334



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 6/186 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           N V +   Y  LI  LSK  K  A   +++ M K+   P + T   +  L+  F   R V
Sbjct: 249 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT---YSCLIDGFCKVRRV 305

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A ++L++M   G  P    +  LL++LC+   +++A KLF  M +R   P++  + +L
Sbjct: 306 DEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTL 365

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L   C   +L  A  +  +M   G  PD + Y+ L  G  + GK+ +A EL+++M+    
Sbjct: 366 LRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKR 425

Query: 310 DPNANS 315
           +P   S
Sbjct: 426 NPFGRS 431



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 3/209 (1%)

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M  R ++P   T+  +     K   LE+  E+   M + G     S Y ++I   CK+G 
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             EA  + + M          ++  +++       + EA E  ++M       A  YG  
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYG-- 118

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             ++  L + ++++ A      + T+G + + + +   +  L     V+EA      M+ 
Sbjct: 119 -PIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVK 177

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
             + P   T+  L+ GL K +  + A E+
Sbjct: 178 QRINPNVVTYNTLINGLCKAWRIETAYEL 206


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 197/414 (47%), Gaps = 10/414 (2%)

Query: 98  SGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           SG+ L   + + ++ + GD       ++ WA  + +Y H+      ++  L KMR+   +
Sbjct: 30  SGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQM 89

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           W L+ +M      L+T E     +RR A AR  K  + + D++   G E +      LLD
Sbjct: 90  WELLSDMHGRG--LVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 147

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            LCK   ++ A ++F  +     P    F   ++GWC   ++ EA + + +MK  GF P 
Sbjct: 148 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 207

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++ Y  +L  Y +       +E+L  M  +GC PN  +YT+++ +L + E+ EEA     
Sbjct: 208 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSH 267

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-SMIQRGILPNQLTYLHIMLAHEKK 396
            M+ SGC+ D + Y +LI+   KS  +    ++    M   G+  N  TY  ++      
Sbjct: 268 RMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYY 327

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRL-ACKLGELKEAVNVWNEMEAA-SLSPGTD 454
              ++ + ++ EM    C PD+ +Y  ++RL   + G+     ++ +E+ +  +L    D
Sbjct: 328 GRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLD 387

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           ++ +++HG    G  + A + F EMV   +  AP+  T   LL+    AQ+  M
Sbjct: 388 TYTLLIHGLCRVGDTVWAYQLFDEMVSSEI--APRSKTCVMLLDE---AQRTNM 436



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 102/263 (38%), Gaps = 39/263 (14%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++    +M ++   +ELL +M  +G      +    I+ L    + ++    F ++E 
Sbjct: 74  NRMVDLLGKMRQIDQMWELLSDMHGRGL-VTVETVAKSIRRLAGARRWKDVVLLFDKLED 132

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G E +  T   L+   CK RKI+   E+  +++   I P+  T+   +        ++E
Sbjct: 133 MGLERNTETMNVLLDVLCKERKIEVAREVF-AVLSPHIPPDAYTFNIFVHGWCSIRRIDE 191

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            +  + EM++ G  P V  Y  V+   CK    +    V + M +               
Sbjct: 192 AMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGS--------------- 236

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               QGC                   P   T   ++ SL + ++ E A  V   + + GC
Sbjct: 237 ----QGC------------------HPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGC 274

Query: 522 ELNVYAWTIWIHSLFSNGHVKEA 544
           + +   +   I+ L  +GH+ EA
Sbjct: 275 KPDTLFYNSLINLLGKSGHLFEA 297


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 217/446 (48%), Gaps = 21/446 (4%)

Query: 58  NNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRC-GD 116
           +++TD    H     ++E +FRI+    S    ++ +L+ S V L   L + V+ R    
Sbjct: 30  SSSTDNQSLH----QNIETVFRIITT-SSSSTDMKHSLESSRVFLSNELIDGVLKRVRFS 84

Query: 117 AGN--LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
            GN      ++ + +K+  + H+      ++  L + RKF  +W ++ +++ + P LI+ 
Sbjct: 85  HGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISL 144

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
              ++++ R A    V++ +E   +  K+  E D   F  LL  LC+  S+ +A  ++  
Sbjct: 145 RTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHG 204

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           ++  F+P+L+ F  LL GW       EA+    +M + G +PD+V YN L+  Y +  +M
Sbjct: 205 LKSMFRPNLQTFNILLSGWKSSE---EAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREM 261

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             AF+++ +MR +    +  +YT +I  L  + + ++A     EM+  GC  DV  Y   
Sbjct: 262 DKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNAT 321

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I  FC ++++   +++LD M+ +G+ PN  TY           +L+    L   M   GC
Sbjct: 322 IRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGC 381

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC----LI 470
           +P+  +   ++RL  K  + + A+ +WN+M    +  G  S++++        C    LI
Sbjct: 382 LPNTQSCLFLVRLFKKYEKEEMALELWNDM----IQKGFGSYILVSEELFDLLCDLGKLI 437

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKAL 496
           EA   F +MV +G    P Y + K +
Sbjct: 438 EAESCFLQMVDKG--HKPSYTSFKRI 461



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 52/327 (15%)

Query: 134 YVHSYDV--YRALIKSLSK---MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           +V  +DV  + AL+++L +   M     V+  ++ M +  P L   + F IL+  + S+ 
Sbjct: 173 FVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLKSMFR--PNL---QTFNILLSGWKSS- 226

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRHFT 247
             ++A    DEM + G +PD   + CL+D  CKN  + +A K+  +MR+   P+ +  +T
Sbjct: 227 --EEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYT 284

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++ G    G+  +A+ +L +MK+ G  PD+  YN  +  +    ++ +AF+LL EM  K
Sbjct: 285 SIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNK 344

Query: 308 -----------------------------------GCDPNANSYTVLIQALCRMEKMEEA 332
                                              GC PN  S   L++   + EK E A
Sbjct: 345 GLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMA 404

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
              + +M + G  + ++    L    C   K+         M+ +G  P+  ++  I + 
Sbjct: 405 LELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRIKVL 464

Query: 393 HE---KKEELEECVELMGEMRKIGCVP 416
            E   K E L+   + M ++  I  +P
Sbjct: 465 MELANKHEALQNLSKKMDDIIWIKKMP 491



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 15/279 (5%)

Query: 310 DPNANSYTVLIQALCRMEKM---EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI-- 364
           DP+  S   ++  L R+ K+    +   +F + ++   E DV  +  L+   C+ + +  
Sbjct: 138 DPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMD 197

Query: 365 -DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
               Y  L SM +    PN  T+ +I+L+  K  E  E      EM ++G  PDV +YN 
Sbjct: 198 ARNVYHGLKSMFR----PNLQTF-NILLSGWKSSE--EAEGFFDEMIEMGVKPDVVSYNC 250

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++ + CK  E+ +A  V  +M    +     ++  ++ G    G   +A    KEM   G
Sbjct: 251 LVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYG 310

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P      A + +   A+++  A D+   +V KG   N   + ++    F +  ++ 
Sbjct: 311 --CYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQS 368

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           A +    MMD   +P   +   L+R  KK    ++A E+
Sbjct: 369 AWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALEL 407


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 217/446 (48%), Gaps = 21/446 (4%)

Query: 58  NNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRC-GD 116
           +++TD    H     ++E +FRI+    S    ++ +L+ S V L   L + V+ R    
Sbjct: 30  SSSTDNQSLH----QNIETVFRIITT-SSSSTDMKHSLESSRVFLSNELIDGVLKRVRFS 84

Query: 117 AGN--LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
            GN      ++ + +K+  + H+      ++  L + RKF  +W ++ +++ + P LI+ 
Sbjct: 85  HGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISL 144

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
              ++++ R A    V++ +E   +  K+  E D   F  LL  LC+  S+ +A  ++  
Sbjct: 145 RTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHG 204

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           ++  F+P+L+ F  LL GW       EA+    +M + G +PD+V YN L+  Y +  +M
Sbjct: 205 LKSMFRPNLQTFNILLSGWKSSE---EAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREM 261

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             AF+++ +MR +    +  +YT +I  L  + + ++A     EM+  GC  DV  Y   
Sbjct: 262 DKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNAT 321

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I  FC ++++   +++LD M+ +G+ PN  TY           +L+    L   M   GC
Sbjct: 322 IRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGC 381

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC----LI 470
           +P+  +   ++RL  K  + + A+ +WN+M    +  G  S++++        C    LI
Sbjct: 382 LPNTQSCLFLVRLFKKYEKEEMALELWNDM----IQKGFGSYILVSEELFDLLCDLGKLI 437

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKAL 496
           EA   F +MV +G    P Y + K +
Sbjct: 438 EAESCFLQMVDKG--HKPSYTSFKRI 461



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 52/327 (15%)

Query: 134 YVHSYDV--YRALIKSLSK---MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           +V  +DV  + AL+++L +   M     V+  ++ M +  P L   + F IL+  + S+ 
Sbjct: 173 FVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLKSMFR--PNL---QTFNILLSGWKSS- 226

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRHFT 247
             ++A    DEM + G +PD   + CL+D  CKN  + +A K+  +MR+   P+ +  +T
Sbjct: 227 --EEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYT 284

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++ G    G+  +A+ +L +MK+ G  PD+  YN  +  +    ++ +AF+LL EM  K
Sbjct: 285 SIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNK 344

Query: 308 -----------------------------------GCDPNANSYTVLIQALCRMEKMEEA 332
                                              GC PN  S   L++   + EK E A
Sbjct: 345 GLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMA 404

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
              + +M + G  + ++    L    C   K+         M+ +G  P+  ++  I + 
Sbjct: 405 LELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRIKVL 464

Query: 393 HE---KKEELEECVELMGEMRKIGCVP 416
            E   K E L+   + M ++  I  +P
Sbjct: 465 MELANKHEALQNLSKKMDDIFWIKKMP 491



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 15/279 (5%)

Query: 310 DPNANSYTVLIQALCRMEKM---EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI-- 364
           DP+  S   ++  L R+ K+    +   +F + ++   E DV  +  L+   C+ + +  
Sbjct: 138 DPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMD 197

Query: 365 -DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
               Y  L SM +    PN  T+ +I+L+  K  E  E      EM ++G  PDV +YN 
Sbjct: 198 ARNVYHGLKSMFR----PNLQTF-NILLSGWKSSE--EAEGFFDEMIEMGVKPDVVSYNC 250

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++ + CK  E+ +A  V  +M    +     ++  ++ G    G   +A    KEM   G
Sbjct: 251 LVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYG 310

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P      A + +   A+++  A D+   +V KG   N   + ++    F +  ++ 
Sbjct: 311 --CYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQS 368

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           A +    MMD   +P   +   L+R  KK    ++A E+
Sbjct: 369 AWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALEL 407


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/605 (23%), Positives = 267/605 (44%), Gaps = 101/605 (16%)

Query: 58  NNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDA 117
           N  +  H  H+  +H +     I K      P L+ +L    +  +P L  ++ N+    
Sbjct: 114 NFISSDHPHHSLHAHLLRSDHTIPK------PLLDTSLAAYVISKQPHLGHQIFNK---M 164

Query: 118 GNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR-KEKPQLITTEV 176
             L +R        PN +    +  AL++S S      +     + ++   +P + T   
Sbjct: 165 KRLRFR--------PNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNT--- 213

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS------------ 224
           F IL+  + S    ++A+ ++++M +YGC PD   +  +L ALCK S             
Sbjct: 214 FNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMK 273

Query: 225 -----------------------VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
                                  +KEAA++ + M  +   P +  + +++ G C EGK+ 
Sbjct: 274 NSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKID 333

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +  +M+     PD+V YN L+ G  +      AF+L++EM+ +G   N  ++ ++I
Sbjct: 334 EAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMI 393

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM------ 374
           +  C   K++EA+   V+M  SG   D  TY T+I+G+CK+ K+   Y+++D M      
Sbjct: 394 KWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLK 453

Query: 375 -----------------------------IQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
                                         +RG + +++TY  +++ + K E+ +  ++L
Sbjct: 454 LDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKL 513

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             EM++ G V  +  YN +IR  C  G+  +AV+  NE+    L P   +  +++HG+  
Sbjct: 514 WEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCW 573

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           +G + +A ++  +MV   L   P   T   LL  L R   +E    +++  ++KG  ++ 
Sbjct: 574 EGAVEKAFQFHNKMVEHSL--KPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDT 631

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
             + I I S      +++A     +M   ++ P   T+  ++ GL K       A  TE+
Sbjct: 632 VTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTK-------AGRTEE 684

Query: 586 VRKMA 590
             K+A
Sbjct: 685 AEKLA 689



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/522 (23%), Positives = 238/522 (45%), Gaps = 44/522 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  ++ +L K  +   V  L+ +M K          + IL+  +   + +K+A EV++ 
Sbjct: 248 TYNTVLTALCKRSQLTQVRDLLLQM-KNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIEL 306

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLLYG----- 252
           M   G  PD + +  ++  LC    + EA +L D+M E FK  P +  + +L+ G     
Sbjct: 307 MTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKM-ESFKLVPDVVTYNTLIDGCFEHR 365

Query: 253 ------------------------------WCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                                         +C EGK+ EA  V+V+M ++GF PD   YN
Sbjct: 366 GSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYN 425

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +++GY + GKM +A++++ EM RKG   +  +   L+  +C  +++++A    ++  + 
Sbjct: 426 TMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKR 485

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D VTY TLI G+ K  + DR  ++ + M + GI+   +TY  I+       + ++ 
Sbjct: 486 GYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQA 545

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           V+ + E+ + G VPD S  N++I   C  G +++A    N+M   SL P   +  +++ G
Sbjct: 546 VDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRG 605

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +G L +    F   + +G        T   +++S  + +++E A D+ + +  K  E
Sbjct: 606 LCREGMLEKGLTLFNTWISKG--KPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLE 663

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            + Y +   +  L   G  +EA    L   +     +    +  +     +Y+ QI++  
Sbjct: 664 PDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLC 723

Query: 583 TEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRAR 624
           T+   K A +    F+  +++G    K    K +DG  +R +
Sbjct: 724 TQGKYKDAMK---LFQQAEQKGVSLNKYTYIKLMDGLLKRRK 762



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 15/227 (6%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I++  +     V+KA +  ++M ++  +PD F    LL  LC+   +++   LF+    +
Sbjct: 566 IIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISK 625

Query: 239 FKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            KP     +  ++  +CKE +L +A  ++ +M+    EPD   YN +++G  + G+  +A
Sbjct: 626 GKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEA 685

Query: 298 FELLKEMRRKG-------CDPNANS----YTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            +L  +   KG         P   +    Y+  I +LC   K ++A + F + E+ G   
Sbjct: 686 EKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSL 745

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL---PNQLTYLHIM 390
           +  TY  L+ G  K RK      +L  M+   I     N + Y HI+
Sbjct: 746 NKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQFFDRNPMRYAHIL 792


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 188/400 (47%), Gaps = 6/400 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           + IL++    A  VK A ++ DEM      PD   +G L+   C    ++ A KL DEM 
Sbjct: 262 YNILLKALCDAGRVKDARQLFDEM---ASAPDVVTYGILIHGHCALGELENAVKLLDEMV 318

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
               +P+   +TS++   C +G + +A  V+  M       D  +Y  +LSG+   G + 
Sbjct: 319 AGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLV 378

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A     EM+RKG   +  +YT +I  LCR  ++EEA +   EM     + D VTYT LI
Sbjct: 379 SARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLI 438

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G+CK  K+   +++ ++M+QRG+ PN +TY  +     K+ +++   EL+ EM   G  
Sbjct: 439 DGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLE 498

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +   YN +I   CK G L++A+    +M+ A L P   ++  ++      G L  A   
Sbjct: 499 LNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSL 558

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +EM+ +G+   P   T   L+N    + +VE  K +   ++ K    N   +   +   
Sbjct: 559 LQEMLDKGI--KPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQY 616

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
               ++K        M   DV P  +T+  L++G  K  N
Sbjct: 617 CIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARN 656



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 203/420 (48%), Gaps = 6/420 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY +++  L           ++E+M + K  ++   ++  ++  F +   +  A    DE
Sbjct: 328 VYTSVVALLCDKGWISDALRVVEDMVQRK-VILDEALYTTVLSGFCNKGDLVSARRWFDE 386

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + G   D   +  +++ LC+   ++EA KL  EM   R       +T L+ G+CK GK
Sbjct: 387 MQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGK 446

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +   M   G  P++V Y  L  G  + G +  A ELL EM  KG + NA +Y  
Sbjct: 447 MAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 506

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC+   +E+A R   +M+ +  + DV TYTTLI   CKS  +DR + +L  M+ +G
Sbjct: 507 LINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKG 566

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P  +TY  +M        +E   +L+  M +    P+ + YN +++  C    +K   
Sbjct: 567 IKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTT 626

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
            ++  M +  + P  +++ +++ G      + EA  +  EM+ +G  L+A  Y  L  LL
Sbjct: 627 EIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLL 686

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N   + +K   A++++  +  +G       +  +I   F+  +++   + C ++++A ++
Sbjct: 687 N---KKKKFVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVEASIV 743



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L+E +EL  E+       +V +YN++++  C  G +K+A  +++EM +A   P   ++ +
Sbjct: 244 LDEAIELFQELPH----KNVCSYNILLKALCDAGRVKDARQLFDEMASA---PDVVTYGI 296

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
           ++HG    G L  A +   EMV  G+  +A  Y ++ ALL
Sbjct: 297 LIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALL 336


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 193/383 (50%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L ++   G   A ++ +R+   +L+   V  +  ++      ++V  A ++  
Sbjct: 166 YGTLINGLCRV---GETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYC 222

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM      PD   +  L+   C    +K A  LF+ M  +   P++  F+ L+ G+CKEG
Sbjct: 223 EMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEG 282

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK VL  M     + D+V YN+L+ GY  + ++  A  L   M ++G  P+  SY+
Sbjct: 283 KVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYS 342

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++ ++EA + F EM       +VVTY +L+ G CKS +     E++D M  R
Sbjct: 343 IMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDR 402

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   N +TY  I+ A  K   +++ + L+ ++++ G  PD+  Y V+I   CK+G L +A
Sbjct: 403 GQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDA 462

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+ ++     SP   ++  +++GF  +G   E      +M   G +  P   T + L+
Sbjct: 463 QKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCI--PNAITYEILI 520

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
           +SL    + + A+ +   ++ +G
Sbjct: 521 HSLFEKDENDKAEKLLREMIARG 543



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 197/407 (48%), Gaps = 14/407 (3%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P  +T   F IL++       V KA+   D++   G + D+  +G L++ LC+    K A
Sbjct: 126 PDAVT---FTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAA 182

Query: 229 AKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            +L   +  +  +P++  +++++   CK+  + +A  +  +M      PD+V Y++L+SG
Sbjct: 183 VQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISG 242

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           +  +GK+  A +L   M     +PN  ++++LI   C+  K+ EA      M +   + D
Sbjct: 243 FCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLD 302

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           VVTY +L+ G+C  +++++   + + M QRG+ P+  +Y  ++    K + ++E ++L  
Sbjct: 303 VVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFE 362

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM      P+V  YN ++   CK G    A+ + +EM       G  S ++  +  L   
Sbjct: 363 EMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMH----DRGQPSNIITYNSILDAI 418

Query: 468 C----LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           C    + +A     ++  +G+   P   T   L+N L +  +++ A+ V+  ++ KG   
Sbjct: 419 CKNNHVDKAIVLLTKIKEKGI--QPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSP 476

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           N+Y +T  I+   + G   E  +    M D   +P   T+  L+  L
Sbjct: 477 NIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSL 523



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 200/408 (49%), Gaps = 3/408 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRER 238
           ++     A+  + A+ +  +M   G +PD      L++   +   +K +  +F + +++ 
Sbjct: 64  ILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKG 123

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           + P    FT L+ G C +G++ +A Y   ++   GF+ D V Y  L++G  ++G+   A 
Sbjct: 124 YHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAV 183

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +LL+ +  K   PN   Y+ +I ++C+ + + +A   + EM       DVVTY++LISGF
Sbjct: 184 QLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGF 243

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C   K+    ++ + MI   I PN  T+  ++    K+ ++ E   ++  M K     DV
Sbjct: 244 CVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDV 303

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN ++   C + ++ +A +++N M    ++P   S+ +M++GF     + EA + F+E
Sbjct: 304 VTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEE 363

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  + +   P   T  +L++ L ++ +   A ++   +  +G   N+  +   + ++  N
Sbjct: 364 MHCKQIF--PNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKN 421

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            HV +A      + +  + P   T+  L+ GL K+     A ++ E +
Sbjct: 422 NHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDL 469



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 6/312 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI     + K      L   M  +   P + T   F IL+  F     V++A  VL 
Sbjct: 236 YSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYT---FSILIDGFCKEGKVREAKNVLA 292

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M K   + D   +  L+D  C    V +A  LF+ M +R   P +  ++ ++ G+CK  
Sbjct: 293 VMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIK 352

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EA  +  +M      P++V YN+L+ G  + G+ + A EL+ EM  +G   N  +Y 
Sbjct: 353 MVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYN 412

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++ A+C+   +++A     +++  G + D+ TYT LI+G CK  ++D   ++ + ++ +
Sbjct: 413 SILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVK 472

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  ++     K   +E + ++ +M+  GC+P+   Y ++I    +  E  +A
Sbjct: 473 GYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKA 532

Query: 438 VNVWNEMEAASL 449
             +  EM A  L
Sbjct: 533 EKLLREMIARGL 544



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 175/356 (49%), Gaps = 4/356 (1%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P    F  +L    K  +   A  +  QM+  G +PD +  N L++ ++Q+G +  +F +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             ++ +KG  P+A ++T+LI+ LC   ++ +A     ++   G + D V+Y TLI+G C+
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             +     ++L  +  + + PN + Y  I+ +  K + + +  +L  EM      PDV  
Sbjct: 176 VGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVT 235

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y+ +I   C +G+LK AV+++N M + +++P   +F +++ GF  +G + EA      M+
Sbjct: 236 YSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMM 295

Query: 481 GRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
            + + L    Y +   L++     ++V  AK +++ +  +G   +V++++I I+      
Sbjct: 296 KKNVKLDVVTYNS---LMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIK 352

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V EA     +M    + P   T+  L+ GL K      A E+ +++        I
Sbjct: 353 MVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNI 408


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/515 (26%), Positives = 232/515 (45%), Gaps = 57/515 (11%)

Query: 90  KLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY----MWASK-QPNYVHSYDVYRAL 144
           +L + ++   +V+ P      +     +G+L   Y     M AS  +PN V    +Y  L
Sbjct: 406 ELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVV----IYTTL 461

Query: 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVLDEMPK 202
           IK+  +  +FG    +++EMR+   Q I  + F    L+   + A+ + +A   L EM +
Sbjct: 462 IKTFLQKSRFGDAVRVLKEMRE---QGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE 518

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVE 261
            G +PD F +G  +    +      A K   EM E    P+    T L+  +CK+GK++E
Sbjct: 519 NGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIE 578

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A      M + G   D   Y  L++G  + GK+ DA E+  EMR KG  P+  SY  LI 
Sbjct: 579 ACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLID 638

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
              ++  M++A+  F EM ++G  ++V+ Y  L+ GFC+S +I++  E+LD M  +G  P
Sbjct: 639 GFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPP 698

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N +TY  I+  + K  +L E  +L  EM+  G VPD   Y  ++   C+L +++ A+ ++
Sbjct: 699 NAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 758

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
              E                    +GC                  A       AL+N + 
Sbjct: 759 ETNE--------------------KGC------------------ASSSAPFNALINWVF 780

Query: 502 RAQKVEMAKDVWSCIV----TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  K E+  D+ + ++     K  + N   + I I  L   G+++ A      M  A++M
Sbjct: 781 KFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLM 840

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
           P   T+  L+ G  K+  R     + ++V     E
Sbjct: 841 PTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIE 875



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 212/460 (46%), Gaps = 8/460 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQL--ITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K R   A   L+ EM      +  +  + F+ +M +  +   ++KA  + D
Sbjct: 318 YSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGA---MEKAKALFD 374

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M  +G  P    +  L++   +  +V++  +L  E+++R    S   + + + G C  G
Sbjct: 375 GMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSG 434

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  ++ +M  +G  P++V+Y  L+  + Q  +  DA  +LKEMR +G  P+   Y 
Sbjct: 435 DLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYN 494

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  L + +KM+EA    +EM  +G + D  TY   ISG+ ++ +     + +  M++ 
Sbjct: 495 SLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLEC 554

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G++PN++    ++  + KK ++ E       M + G + D   Y V++    K G++ +A
Sbjct: 555 GVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDA 614

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +++EM    ++P   S+  ++ GF   G + +A   F EMV  GL S         LL
Sbjct: 615 EEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTS--NVIIYNMLL 672

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               R+ ++E AK++   +  KG   N   +   I     +G + EA     +M    ++
Sbjct: 673 GGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLV 732

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
           P    +  L+ G  +L + + A  I E   K  A     F
Sbjct: 733 PDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPF 772



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 177/360 (49%), Gaps = 11/360 (3%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           E+  L   + + +LM        V  A E+  EM   G  PD F +G L+D   K  +++
Sbjct: 588 EQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQ 647

Query: 227 EAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A+ +FDEM +     ++  +  LL G+C+ G++ +AK +L +M   GF P+ V Y  ++
Sbjct: 648 KASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTII 707

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            GY + G + +AF+L  EM+ KG  P++  YT L+   CR+  +E A   F E    GC 
Sbjct: 708 DGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKGCA 766

Query: 346 ADVVTYTTLISGFCKSRKI----DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE-ELE 400
           +    +  LI+   K  K     D    ++D    +   PN +TY +IM+ +  KE  LE
Sbjct: 767 SSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTY-NIMIDYLCKEGNLE 825

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
              EL   M+K   +P V  Y  ++    K+G   E  +V++E+ AA + P    + V++
Sbjct: 826 AAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVII 885

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAP---QYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           + FL +G   +A     +M  +  +         T +ALL+   +  ++E+A+ V   +V
Sbjct: 886 NAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMV 945



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 192/436 (44%), Gaps = 15/436 (3%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFT 247
           V +A+E+   M   G  P    +  L+D LCK   +++A  L  EM     F  ++ +  
Sbjct: 261 VDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAY-- 318

Query: 248 SLLYGWCKEGKLVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           S+L     +G+  +A   LV +M   GF  D ++Y+  +   ++ G M  A  L   M  
Sbjct: 319 SILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMIT 378

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P A +Y  LI+   R + + +     VE+++        TY T + G C S  +D 
Sbjct: 379 FGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDG 438

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
            Y I+  M   G  PN + Y  ++    +K    + V ++ EMR+ G  PD   YN +I 
Sbjct: 439 AYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLII 498

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              K  ++ EA +   EM      P   ++   + G++  G    A +Y KEM+  G++ 
Sbjct: 499 GLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVI- 557

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P       L+N   +  KV  A   +  +V +G   +   +T+ ++ L  NG V +A  
Sbjct: 558 -PNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEE 616

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAAERQITFKM----YK 601
              +M    + P   ++  L+ G  KL N Q A+ I  E V+       I + M    + 
Sbjct: 617 IFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFC 676

Query: 602 RRGERDLKEKAKKQVD 617
           R GE    EKAK+ +D
Sbjct: 677 RSGE---IEKAKELLD 689



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 158/368 (42%), Gaps = 51/368 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K      +  EMR +    I  +VF    L+  F+    ++KA  + D
Sbjct: 598 YTVLMNGLVKNGKVNDAEEIFHEMRGKG---IAPDVFSYGTLIDGFSKLGNMQKASSIFD 654

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G   +  ++  LL   C++  +++A +L DEM  + F P+   + +++ G+CK G
Sbjct: 655 EMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSG 714

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-------- 309
            L EA  +  +MK  G  PD  VY  L+ G  ++  +  A  +  E   KGC        
Sbjct: 715 DLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKGCASSSAPFN 773

Query: 310 -------------------------------DPNANSYTVLIQALCRMEKMEEANRAFVE 338
                                           PN  +Y ++I  LC+   +E A   F  
Sbjct: 774 ALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHH 833

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M+++     V+TYT+L++G+ K  +    + + D +I  GI P+ + Y  I+ A  K+  
Sbjct: 834 MQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGM 893

Query: 399 LEECVELMGEM-----RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
             + + L+ +M        GC   +S    ++    K+GE++ A  V   M      P +
Sbjct: 894 TTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDS 953

Query: 454 DSFVVMVH 461
            + + +++
Sbjct: 954 STVIELIN 961



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 52/381 (13%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LLDAL K + +     ++  M ER     ++ +  L+   C++G +  AK VL++ ++  
Sbjct: 195 LLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEE- 253

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
                        G A +  + +A EL K M  KG  P+  SY +LI  LC+ +++E+A 
Sbjct: 254 ------------LGTATL-NVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAK 300

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKID---------------------------- 365
              VEM   G  AD V Y+ LI G  K R  D                            
Sbjct: 301 SLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVM 360

Query: 366 -------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
                  +   + D MI  G+ P    Y  ++    +++ + +  EL+ E++K   V   
Sbjct: 361 SKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISP 420

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y   ++  C  G+L  A N+  EM A+   P    +  ++  FL +    +A    KE
Sbjct: 421 YTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKE 480

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  +G+  AP      +L+  L +A+K++ A+     +V  G + + + +  +I      
Sbjct: 481 MREQGI--APDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEA 538

Query: 539 GHVKEACSYCLDMMDADVMPQ 559
           G    A  Y  +M++  V+P 
Sbjct: 539 GEFASADKYVKEMLECGVIPN 559



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 164/410 (40%), Gaps = 50/410 (12%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP----------SLRHFTS--------- 248
           D F F  L   LC   S+++A  +   M ER  P           LR F           
Sbjct: 98  DSFSFLAL--DLCNFGSIEKAHSVVIRMIERKWPVAEVWSSIVRCLREFVGKSDDRVLLF 155

Query: 249 --LLYGWCKEGKLVEAKYVLVQMKDAGFE--PDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
             L+ G+ ++G L EA +V    KD   +  P +   N+LL    +  ++   +++ K M
Sbjct: 156 GILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYKGM 215

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS------------------GCEA 346
             +    +  SY +LI A CR   ++ A    ++ E                     C+ 
Sbjct: 216 VERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCKG 275

Query: 347 DVV---TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            V    +Y  LI G CK ++++    +L  M   G+  + + Y  ++    K    +   
Sbjct: 276 LVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAAN 335

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L+ EM   G   D   Y+  I +  K G +++A  +++ M    ++PG  ++  ++ GF
Sbjct: 336 GLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGF 395

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
             +  + +  E   E+  R ++ +P  YGT    +  +  +  ++ A ++   +   GC 
Sbjct: 396 FREKNVRKGYELLVEIKKRNIVISPYTYGT---AVKGMCSSGDLDGAYNIVKEMGASGCR 452

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            NV  +T  I +        +A     +M +  + P    +  L+ GL K
Sbjct: 453 PNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSK 502



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260
           K+G +P++  +  ++D LCK  +++ A +LF  M++    P++  +TSLL G+ K G+  
Sbjct: 802 KFG-KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRS 860

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-----GCDPNANS 315
           E   V  ++  AG EPD ++Y+ +++ + + G  T A  LL +M  K     GC  + ++
Sbjct: 861 EMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSIST 920

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
              L+    ++ +ME A +    M R     D  T   LI+  C S
Sbjct: 921 CRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCIS 966


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 194/383 (50%), Gaps = 8/383 (2%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           + + +++  S  P+ + +  +Y A+I  L+K   F     L++EMR E+   I+ ++ + 
Sbjct: 128 VAFFHHVLPSLPPDSLPA--LYAAMIDLLAKHHHFPLARHLLDEMR-ERSVPISAQLILA 184

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           L+RR+  A M  +A ++   M +YG   PD      LL AL K     EA  +FD  +  
Sbjct: 185 LIRRYVRAEMPSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV 244

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P +  +T+L++ WC+ G+L EA+ V  +M+ AG  P++  Y  ++    + G++  A 
Sbjct: 245 FTPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQ 304

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           ELL +M   GC PN  ++  +++A  +  + E+  +   +M + GCE D++TY  L+   
Sbjct: 305 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 364

Query: 359 C--KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           C      +D   ++L  MI +G +P+  T+  ++        +    +L   M+++ C P
Sbjct: 365 CGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKP 424

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           +V  YN+++RL      +   + +  +M+A  + P  +++  ++  F G+G    A    
Sbjct: 425 NVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTL 484

Query: 477 KEMVGRGLL--SAPQYGTLKALL 497
           +EMV    L  + P Y  + ALL
Sbjct: 485 REMVEEKALKPTKPVYDMVLALL 507



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 86/246 (34%), Gaps = 39/246 (15%)

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  +I    K         +LD M +R +  +    L ++  + + E   E  +L   M 
Sbjct: 147 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 206

Query: 411 KIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           + G   PD +    ++    K     EA  +++  ++   +P    +  +VH +   G L
Sbjct: 207 EYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV-FTPDVVLYTTLVHAWCRSGRL 265

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA   F EM   G+                                       NVY +T
Sbjct: 266 NEAERVFAEMQQAGVTP-------------------------------------NVYTYT 288

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             I +++  G V  A      M+D+   P   TF  +MR   K    +   ++  ++R++
Sbjct: 289 AVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQL 348

Query: 590 AAERQI 595
             E  I
Sbjct: 349 GCEPDI 354


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 204/438 (46%), Gaps = 9/438 (2%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           Y  S   Y A++ +LS      +     + M  +   P + T   + IL+R        K
Sbjct: 119 YAPSVLAYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYT---YNILVRALCGRGHRK 174

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLL 250
           +A+ VL +M   GC+P+   +  L+ A C+   V  A +L D MRE   KP+L  F S++
Sbjct: 175 EALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVV 234

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK G++ +A+ V  +M   G  PD V YN L+ GY ++G   +A  +  EM RKG  
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  ++T LI  +C+   +E A     EM   G + + +T+T LI GFCK   +D     
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M Q  I P+ + Y  ++  +     ++E  EL+ EM   G  PDV  Y+ ++   CK
Sbjct: 355 VREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCK 414

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+   A  +  +M    + P   ++  ++     +  L +A   FK M+  GL   P  
Sbjct: 415 NGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGL--QPDE 472

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +L++   +   VE A  +   +V  G   +V  +++ I+ L  +   KEA      
Sbjct: 473 VTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFK 532

Query: 551 MMDADVMPQPDTFAKLMR 568
           +   + +P    +  LMR
Sbjct: 533 LYHEEPVPANIKYDALMR 550



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 196/377 (51%), Gaps = 3/377 (0%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCK 255
            D M   G  P+ + +  L+ ALC     KEA  +  +MR     P+   + +L+  +C+
Sbjct: 145 FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCR 204

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++  A+ ++  M++ G +P++V +N++++G  + G+M DA ++  EM ++G  P+  S
Sbjct: 205 AGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVS 264

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  L+   C++    EA   F EM R G   DVVT+T+LI   CK+  ++R   ++  M 
Sbjct: 265 YNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMR 324

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           +RG+  N++T+  ++    KK  L++ +  + EMR+    P V  YN +I   C +G + 
Sbjct: 325 ERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMD 384

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA  +  EMEA  + P   ++  ++  +   G    A +  ++M+  G+L  P   T  +
Sbjct: 385 EARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL--PDAITYSS 442

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+  L   +++  A  ++  +++ G + +   +T  I      G+V+ A S   +M+ A 
Sbjct: 443 LIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAG 502

Query: 556 VMPQPDTFAKLMRGLKK 572
           V+P   T++ L+ GL K
Sbjct: 503 VLPDVVTYSVLINGLSK 519



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 221/462 (47%), Gaps = 35/462 (7%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     + +++  + K  +      + +EM KE   P  ++   +  L+  +    
Sbjct: 224 KPNLV----TFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVS---YNTLVGGYCKVG 276

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
              +A+ V  EM + G  PD   F  L+  +CK  +++ A  L  EMRER  + +   FT
Sbjct: 277 CSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFT 336

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+CK+G L +A   + +M+    +P +V YN L++GY  +G+M +A EL++EM  K
Sbjct: 337 ALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK 396

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y+ ++ A C+      A +   +M  +G   D +TY++LI   C+ +++   
Sbjct: 397 GVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDA 456

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + +  +MI  G+ P+++TY  ++  H K+  +E  + L  EM K G +PDV  Y+V+I  
Sbjct: 457 HVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLING 516

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             K    KEA  +  ++      P    +  ++            C    E+  + +L+ 
Sbjct: 517 LSKSARTKEAQRLLFKLYHEEPVPANIKYDALMR-----------CCRNAEL--KSVLAL 563

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
            +   +K L+N          A  V+  I+ +   L+   +++ IH     G+V +A S+
Sbjct: 564 LKGFCMKGLMNE---------ADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSF 614

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
              M+     P   +   L+RG   L+ + +  E  + ++++
Sbjct: 615 HKQMLQCGFAPNSTSTISLIRG---LFEKGMVVEADQVIQQL 653



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 163/332 (49%), Gaps = 3/332 (0%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           + PS+  + ++L     +  L  A+     M   G  P++  YN L+      G   +A 
Sbjct: 119 YAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 177

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            +L++MR  GCDPNA +Y  L+ A CR  +++ A R    M   G + ++VT+ ++++G 
Sbjct: 178 SVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGI 237

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK+ +++   ++ D M++ G+ P+ ++Y  ++  + K     E + +  EM + G +PDV
Sbjct: 238 CKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDV 297

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +  +I + CK G L+ AV +  EM    L     +F  ++ GF  +G L +A    +E
Sbjct: 298 VTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVRE 357

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  R     P      AL+N      +++ A+++   +  KG + +V  ++  + +   N
Sbjct: 358 M--RQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKN 415

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           G    A      M++  V+P   T++ L+R L
Sbjct: 416 GDTHSAFQLNQQMLENGVLPDAITYSSLIRVL 447



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 144/362 (39%), Gaps = 52/362 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + ALI    K          + EMR+ + Q  +   +  L+  +     + +A E++ EM
Sbjct: 335 FTALIDGFCKKGFLDDALLAVREMRQCRIQ-PSVVCYNALINGYCMVGRMDEARELVREM 393

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G +PD   +  +L A CKN     A +L  +M E    P    ++SL+   C+E +L
Sbjct: 394 EAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRL 453

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +   M   G +PD V Y +L+ G+ + G +  A  L  EM + G  P+  +Y+VL
Sbjct: 454 GDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVL 513

Query: 320 IQALCRMEKMEEANR------------------------------AFVEMERSGC----- 344
           I  L +  + +EA R                              + + + +  C     
Sbjct: 514 INGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLM 573

Query: 345 -EADVV--------------TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
            EAD V               Y+ LI G C+   + +       M+Q G  PN  + + +
Sbjct: 574 NEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISL 633

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +    +K  + E  +++ ++     + D      +I L  K G +   ++V + M    L
Sbjct: 634 IRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGL 693

Query: 450 SP 451
            P
Sbjct: 694 LP 695



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 21/260 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L + ++ G    L + M     +P  +T   +  L+        V++A+ + D
Sbjct: 440 YSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVT---YTSLIDGHCKEGNVERALSLHD 496

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPS--------------- 242
           EM K G  PD   +  L++ L K++  KEA +L F    E   P+               
Sbjct: 497 EMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAE 556

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L+   +LL G+C +G + EA  V   + D  +  D  VY+ L+ G+ + G +  A    K
Sbjct: 557 LKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHK 616

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M + G  PN+ S   LI+ L     + EA++   ++      AD      LI    K  
Sbjct: 617 QMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEG 676

Query: 363 KIDRCYEILDSMIQRGILPN 382
            +D   ++L  M + G+LP+
Sbjct: 677 NVDAVLDVLHGMARDGLLPS 696



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ L Y  ++LA      L         M   G  P+V  YN+++R  C  G  KEA
Sbjct: 118 GYAPSVLAYNAVLLALSDAS-LPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++V  +M  A   P   ++  +V  F   G  ++  E   +M+  G L  P   T  +++
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAG-EVDRAERLVDMMREGGLK-PNLVTFNSVV 234

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N + +A ++E A+ V+  +V +G   +  ++   +      G   EA S   +M    +M
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE-RQITF 597
           P   TF  L+  + K  N + A  +  ++R+   +  +ITF
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITF 335


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 206/436 (47%), Gaps = 3/436 (0%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D  K+  ILKK +     +  AL  SG+     L  +++ R  +   +    ++WA  Q 
Sbjct: 106 DAHKVGEILKKHYLSEDAVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIWAKNQT 165

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            YVH  ++Y ++I  L K RKF  +W L++EM       ++      +M+R        +
Sbjct: 166 GYVHKPEIYNSMIDILGKSRKFSLMWDLVQEMSGLN-GYVSLVTMGKVMKRLVRDGKYNE 224

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           AI+    + K+G          L+D L +N  V++A  +  E         R +  L  G
Sbjct: 225 AIDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVALEFEGCLTLDYRSYNILSSG 284

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +CK     +A+  + +M++ GF P++V Y   +  Y +     +   +L EM+ KGC P+
Sbjct: 285 YCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKGCPPD 344

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YTV I+AL +  ++ +A     E++R+G       Y +LI   C S ++   + I +
Sbjct: 345 LITYTVYIRALGKARQINKALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFE 404

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            + ++G+  +   Y  ++ A     + E  ++L+ +M +  C PDV  Y  ++++ C+  
Sbjct: 405 DVEKQGVGRDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKK 464

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +K    + N M    +S    ++ ++VHG   QG L  AC +F+E V +G++  P   T
Sbjct: 465 SMKMLKFLLNHMFENDVSIDIVTYDLLVHGLRKQGKLKYACFFFQEAVLKGMV--PCDKT 522

Query: 493 LKALLNSLLRAQKVEM 508
            K LL  L R    EM
Sbjct: 523 YKILLEELERKNMAEM 538



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 148/332 (44%), Gaps = 40/332 (12%)

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC-EADVVT 350
           GK  +A +  + + + G   +  +  VL+  L R  ++E+A    +E E  GC   D  +
Sbjct: 220 GKYNEAIDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVALEFE--GCLTLDYRS 277

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  L SG+CK+R      + ++ M +RG  PN ++Y   + A+ ++++      ++ EM+
Sbjct: 278 YNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQ 337

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + GC PD+  Y V IR   K  ++ +A+ +  E++      GT  +  ++H     G L 
Sbjct: 338 EKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLK 397

Query: 471 EACEYF----KEMVGRGL------LSA-----------------------PQYGTLKALL 497
           +A   F    K+ VGR L      +SA                       P   T   LL
Sbjct: 398 DAWNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYAPLL 457

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               R + ++M K + + +      +++  + + +H L   G +K AC +  + +   ++
Sbjct: 458 KMCCRKKSMKMLKFLLNHMFENDVSIDIVTYDLLVHGLRKQGKLKYACFFFQEAVLKGMV 517

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           P   T+  L+  L+    R+  AE+  K+ K+
Sbjct: 518 PCDKTYKILLEELE----RKNMAEMKGKIEKL 545


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 221/497 (44%), Gaps = 69/497 (13%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI +L +    GAV  +   MRK+  +P + T   + +L+R       V  A ++L
Sbjct: 136 LYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFT---YNLLVRALCQNHRVGAARKML 192

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD--------------------EMRE 237
           DEM   GC PD+  +G ++ ALC    V EA ++                       M+E
Sbjct: 193 DEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNAVILALCREFRMQE 252

Query: 238 RF-----------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            F           +P++  +T+++  +CK G+L  A  +L +M   G  P++  +  L+ 
Sbjct: 253 VFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVG 312

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G    G++ DA ++ K M  +G  P+  SY VLI+ LC +  ++ A+    +ME+ GC  
Sbjct: 313 GLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFP 372

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           +  TY+TLI GF K+  +D    I + M + G  PN + Y +++    KK    +   L+
Sbjct: 373 NARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLI 432

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M    C P+   +N +IR  C    +  A+ V++EM      P   ++  ++HG   +
Sbjct: 433 DKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFRE 492

Query: 467 GCLIEACEYFKEM-------------------------------VGRGLLSA--PQYGTL 493
           G   +A +   EM                               VGR ++    P   T 
Sbjct: 493 GNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTF 552

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            A++++  +  +V MA  +   +    C  N+  +TI +  L +   +++A  Y L M+ 
Sbjct: 553 TAIIHAYCKEGEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLY 612

Query: 554 ADVMPQPDTFAKLMRGL 570
             + P   T+  L+RG+
Sbjct: 613 EGIYPNTVTWNVLVRGV 629



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 152/298 (51%), Gaps = 2/298 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           +T  + +L+R   S   +K A  VL++M ++GC P+   +  L+D   K   +  A  ++
Sbjct: 338 STVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIW 397

Query: 233 DEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           ++M R   KP++  +T+++  +CK+    +A+ ++ +M      P+ V +N L+      
Sbjct: 398 NDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNC 457

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            ++  A  +  EMRR GC PN  +Y  L+  L R     +A +  +EM+  G E  +VTY
Sbjct: 458 RRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTY 517

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            T++SG C+ R        +  MI RGI P+  T+  I+ A+ K+ E+     ++G M  
Sbjct: 518 NTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNV 577

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG-FLGQGC 468
           + C  ++  Y +++   C   +L++A+    +M    + P T ++ V+V G F   GC
Sbjct: 578 VNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRGVFRNLGC 635



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 168/394 (42%), Gaps = 11/394 (2%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF- 239
           +RR A+A  V      L EM   G    E      + A  +  +   A K F        
Sbjct: 68  VRRLAAAGDVDGVQLELQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLG 127

Query: 240 --KPSL-RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
             +P+  R +  L+    +E  +     V   M+  G +P++  YN L+    Q  ++  
Sbjct: 128 CARPTAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGA 187

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A ++L EM  KGC P+  +Y  ++ ALC + +++EA         S       +Y  +I 
Sbjct: 188 ARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVL-----SAAPPVAASYNAVIL 242

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             C+  ++   + ++  M+ RG+ PN +TY  I+ A  K  EL     ++  M   GC P
Sbjct: 243 ALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTP 302

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           +V+ +  ++      G + +A+++W  M A   +P T S+ V++ G    G L  A    
Sbjct: 303 NVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVL 362

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            +M   G    P   T   L++   +A  ++ A  +W+ +   GC+ NV  +T  +    
Sbjct: 363 NDMEQHGCF--PNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFC 420

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
                 +A S    M+  +  P   TF  L+R L
Sbjct: 421 KKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSL 454


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/548 (24%), Positives = 257/548 (46%), Gaps = 56/548 (10%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNY 134
           EK + I+++  S+           G +       +VI    +A  +   + ++   + N+
Sbjct: 462 EKAYSIIREMMSK-----------GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510

Query: 135 VHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           V   DV  Y  LI S  K+          +EM ++   P ++T   +  L+  +  AR +
Sbjct: 511 VVP-DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVT---YTALIHAYLKARKM 566

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER---------FK- 240
             A E+ + M   GC P+   +  L+D  CK+  +++A +++  MR           FK 
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 241 -------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
                  P++  + +L+ G CK  K+ EA+ +L  M   G EP+ +VY+ L+ G+ ++GK
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A  +  +M  +G  PN  +Y+ LI  L + ++++ A +    M  + C  +V+ YT 
Sbjct: 687 LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I G CK  K D  Y ++  M ++G  PN +TY  ++    K  ++++C+ELM +M   G
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF-----LGQGC 468
           C P+   Y V+I   C  G L +A  + +EM+          +  ++ GF     +  G 
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGL 866

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA----KDVWSCIVTKGCELN 524
           L E  E          ++ P     + L++S  +A ++E+A    K++ SC      + +
Sbjct: 867 LDEIAEN---------VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKD 917

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +Y+  I   SL S   V +A     DM+    +P+   F  L++GL ++   + A ++++
Sbjct: 918 LYSSLIESLSLASK--VDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975

Query: 585 KVRKMAAE 592
            + +M  +
Sbjct: 976 CICQMMVD 983



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 209/464 (45%), Gaps = 30/464 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     YR L+    + R+ G    ++  M  E     +  +F  L+  +  +    
Sbjct: 332 PNVV----TYRILLCGCLRKRQLGRCKRILSMMITEGCY-PSRRIFNSLIHAYCRSGDYS 386

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE------AAKLFDEMRE-RFKPSLR 244
            A ++L +M   GC+P   V+  L+  +C N  +        A K + EM +     +  
Sbjct: 387 YAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKV 446

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           + ++L    C  GK  +A  ++ +M   GF PD   Y+ ++       K+ +AF L +EM
Sbjct: 447 NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +     P+  +YT+LI + C++  +++A + F EM R GC  +VVTYT LI  + K+RK+
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----- 419
               E+ + M+  G +PN +TY  ++  H K  ++E+  ++   MR    +PDV      
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 420 -----------NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
                       Y  ++   CK  ++KEA ++ + M      P    +  ++ GF   G 
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           L EA   F +M  RG    P   T  +L++ L + +++++A  V S ++   C  NV  +
Sbjct: 687 LDEAQMVFTKMSERGY--GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIY 744

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           T  I  L   G   EA      M +    P   T+  ++ G  K
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 217/491 (44%), Gaps = 46/491 (9%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           LG ++++WA +Q  Y H+  VY AL++ L            + E+R E  +++   + V+
Sbjct: 144 LGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVL 203

Query: 180 ----------------------------------LMRRFASARMVKKAIEVLDEMPKYGC 205
                                             L+R F  A  +  A  V  EM   G 
Sbjct: 204 IRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGF 263

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
             D +  GC +  LCK    +EA  L +  +E FK     +T ++ G C+     EA   
Sbjct: 264 NMDGYTLGCFVHLLCKAGRWREALALIE--KEEFKLDTVIYTQMISGLCEASLFEEAMDF 321

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L +M+ +   P++V Y  LL G  +  ++     +L  M  +GC P+   +  LI A CR
Sbjct: 322 LSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCR 381

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-------SMIQRG 378
                 A +   +M   GC+   V Y  LI G C + K+    ++L+        M+   
Sbjct: 382 SGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPS-LDVLELAEKAYGEMLDAH 440

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++ N++   ++        + E+   ++ EM   G +PD S Y+ VI L C   ++  A 
Sbjct: 441 VVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAF 500

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++ EM++  + P   ++ +++  F   G L +A ++F EMV  G   AP   T  AL++
Sbjct: 501 LLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIH 558

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           + L+A+K+  A +++  ++++GC  NV  +T  I     +G +++AC     M     +P
Sbjct: 559 AYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIP 618

Query: 559 QPDTFAKLMRG 569
             D + K+  G
Sbjct: 619 DVDMYFKIDDG 629


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 218/476 (45%), Gaps = 18/476 (3%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           +E +L   G +L P L  +VI+R  D  N  +  + WA KQ  + H+      L+    K
Sbjct: 56  IEKSLGLYGDILVPDLVGKVIHRIPDP-NTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVK 114

Query: 151 MRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
            R+        +   K   +P  ++   +  LM  F  A  VKKA+ +  EM   G    
Sbjct: 115 ARRVEDAHLFFQSHMKNVFEPDEVS---YNTLMNGFFKAGDVKKALALFGEMKDSGIAVL 171

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
                 +L  LC    +  A ++F +M   F P+L  +T ++ G CK  K+ +A  +  Q
Sbjct: 172 R-SHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQ 230

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M D    PD+V Y  L+ G  +  ++ +A++L +E R KGC P   +Y  +I  LC+  +
Sbjct: 231 MVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGR 290

Query: 329 MEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           +E A   + +M R    + D+ TY+ LI+G   S + ++ YE+ + M+  G  P+ +TY 
Sbjct: 291 IENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYN 350

Query: 388 HIMLAHEKKEELEECVELMGEMRKIG----CVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            ++    K    ++ +E+    RK+G    C P+V  Y V+I   CK+  L +AV +  E
Sbjct: 351 TLLDGLCKSGCEDKAMEI---FRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKE 407

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           ME  SL P   +F  ++     +  + EA E F+ +   G    P       +L    + 
Sbjct: 408 MEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESI---GKTCKPDSVLFNTMLAGYCKI 464

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            +++ AK +   ++  GC   +  +T  +      G   +A     +M++    P+
Sbjct: 465 TRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 9/248 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  +I  L K  +      L ++M +E   KP + T   +  L+     +   +KA E+ 
Sbjct: 278 YNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFT---YSALINGLNLSNRGEKAYELY 334

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--ERFKPSLRHFTSLLYGWCK 255
           +EM   GC PD   +  LLD LCK+    +A ++F +M       P++  +T L+  +CK
Sbjct: 335 EEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCK 394

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             +L +A  +  +M+     PD V +  ++    +  ++ +A EL + +  K C P++  
Sbjct: 395 VDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIG-KTCKPDSVL 453

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           +  ++   C++ ++++A +    M  SGC   + TYT L++GFC++ +      +   MI
Sbjct: 454 FNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMI 513

Query: 376 QRGILPNQ 383
           + G  P +
Sbjct: 514 EMGFPPER 521



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD  +YN ++    K G++K+A+ ++ EM+ + ++    S  +++ G    G +  A E 
Sbjct: 135 PDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEV 193

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           FK+M G   + +P   +   +++ L +++KV+ A  ++  +V K    +V  +   I  L
Sbjct: 194 FKDMSG---IFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGL 250

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                VKEA     +       P   T+  ++ GL K
Sbjct: 251 GKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCK 287


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 206/474 (43%), Gaps = 44/474 (9%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S   Y +L+  L K R   +V  L++EM     KP + T   F I +R    A  + +A 
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYT---FTICIRVLGRAGKINEAY 278

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGW 253
           E+L  M   GC PD   +  L+DALC    +  A ++F++M+  R KP    + +LL  +
Sbjct: 279 EILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRF 338

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
                L   K    +M+  G  PD+V +  L+    + G   +AF+ L  MR +G  PN 
Sbjct: 339 SDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++Y  LI  L R+ ++++A   F  ME  G +    TY   I  + KS       E  + 
Sbjct: 399 HTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458

Query: 374 MIQRGILPN-----------------------------------QLTYLHIMLAHEKKEE 398
           M  +GI PN                                    +TY  +M  + K  E
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           ++E ++L+ EM + GC PDV   N +I    K   + EA  ++  M+   L P   ++  
Sbjct: 519 IDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNT 578

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G    G + EA E F+ MV +G    P   T   L + L +  +V +A  +   ++ 
Sbjct: 579 LLAGLGKNGKIQEAIELFEGMVQKG--CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMD 636

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            GC  +V+ +   I  L  NG VKEA  +    M   V P   T   L+ G+ K
Sbjct: 637 MGCVPDVFTYNTIIFGLVKNGQVKEAMCF-FHQMKKLVYPDFVTLCTLLPGVVK 689



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 232/516 (44%), Gaps = 46/516 (8%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
           + Y+   +   N VH+ +    ++++L    K+ +   V+ LM++   ++     T  ++
Sbjct: 102 FSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKR----DTNTYL 157

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
            + +  +    +K+A   L +M ++G   + + +  L+  L K+    EA +++  M  E
Sbjct: 158 TIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILE 217

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            F+PSL+ ++SL+ G  K   +     +L +M+  G +P++  +   +    + GK+ +A
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 277

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF--------------------- 336
           +E+LK M  +GC P+  +YTVLI ALC   K++ A   F                     
Sbjct: 278 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDR 337

Query: 337 --------------VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
                          EME+ G   DVVT+T L+   CK+      ++ LD M  +GILPN
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
             TY  ++    +   L++ +EL G M  +G  P    Y V I    K G+   A+  + 
Sbjct: 398 LHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 457

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           +M+   ++P   +    ++     G   EA + F  +   GL+  P   T   ++    +
Sbjct: 458 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLV--PDSVTYNMMMKCYSK 515

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             +++ A  + S ++  GCE +V      I++L+    V EA    + M +  + P   T
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575

Query: 563 FAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITF 597
           +  L+ GL K    Q A E+ E  V+K      ITF
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITF 611



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 176/340 (51%), Gaps = 7/340 (2%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           +++R  D  +L      W+  + + +V     +  L+ +L K   FG  +  ++ MR + 
Sbjct: 334 LLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQG 393

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P L T    +  + R      +  A+E+   M   G +P  + +   +D   K+    
Sbjct: 394 ILPNLHTYNTLICGLLR---VHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSV 450

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A + F++M+ +   P++    + LY   K G+  EAK +   +KD G  PD V YN ++
Sbjct: 451 SALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 510

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
             Y+++G++ +A +LL EM   GC+P+      LI  L + ++++EA + F+ M+    +
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 570

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             VVTY TL++G  K+ KI    E+ + M+Q+G  PN +T+  +     K +E+   +++
Sbjct: 571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKM 630

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           + +M  +GCVPDV  YN +I    K G++KEA+  +++M+
Sbjct: 631 LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK 670



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 175/382 (45%), Gaps = 20/382 (5%)

Query: 95   LQHSGVVLRPGLTERVINR--CGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR 152
            L  +G+      +ER++    C D  ++      ++ K  N   +  ++    K L    
Sbjct: 724  LAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQP 783

Query: 153  KFGAVWALMEEMRKEKPQLITTEVFV---------------ILMRRFASARMVKKAIEVL 197
            K      L+  + +     I  +VF+                L+  +  +  + +  E+ 
Sbjct: 784  KLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELY 843

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRER-FKPSLRHFTSLLYGWCK 255
             EM  + CE +      ++  L K  +V +A  L+ D M +R F P+   +  L+ G  K
Sbjct: 844  KEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSK 903

Query: 256  EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             G+L EAK +   M D G  P+  +YN L++G+ + G+   A  L K M ++G  P+  +
Sbjct: 904  SGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963

Query: 316  YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM- 374
            Y+VL+  LC + +++E    F E++ SG   DVV Y  +I+G  KS +++    + + M 
Sbjct: 964  YSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMK 1023

Query: 375  IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              RGI P+  TY  ++L       +EE  ++  E+++ G  P+V  +N +IR     G+ 
Sbjct: 1024 TSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKP 1083

Query: 435  KEAVNVWNEMEAASLSPGTDSF 456
            + A  V+  M     SP T ++
Sbjct: 1084 EHAYAVYQTMVTGGFSPNTGTY 1105



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 167/352 (47%), Gaps = 8/352 (2%)

Query: 220  CKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKEGKLVE-AKYVLVQMKDAGFEP 276
            CK+++V  A  LF++  +    +P L  + +LL G   E  ++E A+ V +Q+K  G  P
Sbjct: 760  CKHNNVSGARTLFEKFTKDLGVQPKLPTY-NLLIGGLLEADMIEIAQDVFLQVKSTGCIP 818

Query: 277  DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
            D+  YN LL  Y + GK+ + FEL KEM    C+ N  ++ ++I  L +   +++A   +
Sbjct: 819  DVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLY 878

Query: 337  VE-MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             + M          TY  LI G  KS ++    ++ + M+  G  PN   Y  ++    K
Sbjct: 879  YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938

Query: 396  KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              E +    L   M K G  PD+  Y+V++   C +G + E ++ + E++ + L+P    
Sbjct: 939  AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVC 998

Query: 456  FVVMVHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
            + ++++G      L EA   F EM   RG+   P   T  +L+ +L  A  VE A  +++
Sbjct: 999  YNLIINGLGKSHRLEEALVLFNEMKTSRGI--TPDLYTYNSLILNLGIAGMVEEAGKIYN 1056

Query: 515  CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             I   G E NV+ +   I     +G  + A +    M+     P   T+ +L
Sbjct: 1057 EIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 203/467 (43%), Gaps = 16/467 (3%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  L+  L K  K      L E M ++   P  IT   F  L         V  A+++L 
Sbjct: 576  YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT---FNTLFDCLCKNDEVTLALKMLF 632

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            +M   GC PD F +  ++  L KN  VKEA   F +M++   P      +LL G  K   
Sbjct: 633  KMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVK-AS 691

Query: 259  LVEAKYVLVQ--MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            L+E  Y ++   + +   +P  + + +L+        + +A    + +   G   + +S 
Sbjct: 692  LIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSI 751

Query: 317  TV-LIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
             V +I+  C+   +  A   F +  +  G +  + TY  LI G  ++  I+   ++   +
Sbjct: 752  LVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQV 811

Query: 375  IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
               G +P+  TY  ++ A+ K  +++E  EL  EM    C  +   +N+VI    K G +
Sbjct: 812  KSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV 871

Query: 435  KEAVNVWNE-MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             +A++++ + M     SP   ++  ++ G    G L EA + F+ M+  G    P     
Sbjct: 872  DDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYG--CRPNCAIY 929

Query: 494  KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
              L+N   +A + + A  ++  +V +G   ++  +++ +  L   G V E   Y  ++ +
Sbjct: 930  NILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKE 989

Query: 554  ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
            + + P    +  ++ GL K +  + A  +     +M   R IT  +Y
Sbjct: 990  SGLNPDVVCYNLIINGLGKSHRLEEALVL---FNEMKTSRGITPDLY 1033


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 194/383 (50%), Gaps = 8/383 (2%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           + + +++  S  P+ + +  +Y A+I  L+K   F     L++EMR E+   I+ ++ + 
Sbjct: 129 VAFFHHVLPSLPPDSLPA--LYAAMIDLLAKHHHFPLARHLLDEMR-ERSVPISAQLILA 185

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           L+RR+  A M  +A ++   M +YG   PD      LL AL K     EA  +FD  +  
Sbjct: 186 LIRRYVRAEMPSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV 245

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P +  +T+L++ WC+ G+L EA+ V  +M+ AG  P++  Y  ++    + G++  A 
Sbjct: 246 FTPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQ 305

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           ELL +M   GC PN  ++  +++A  +  + E+  +   +M + GCE D++TY  L+   
Sbjct: 306 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 365

Query: 359 C--KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           C      +D   ++L  MI +G +P+  T+  ++        +    +L   M+++ C P
Sbjct: 366 CGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKP 425

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           +V  YN+++RL      +   + +  +M+A  + P  +++  ++  F G+G    A    
Sbjct: 426 NVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTL 485

Query: 477 KEMVGRGLL--SAPQYGTLKALL 497
           +EMV    L  + P Y  + ALL
Sbjct: 486 REMVEEKALKPTKPVYDMVLALL 508



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 79/209 (37%), Gaps = 35/209 (16%)

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y  +I L  K      A ++ +EM   S+       + ++  ++      EA + F+ M 
Sbjct: 148 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 207

Query: 481 GRGLLSAPQYGTLKALLNSL----------------------------------LRAQKV 506
             G   AP   TL +LL +L                                   R+ ++
Sbjct: 208 EYGA-GAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSGRL 266

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           + A+ V++ +   G   NVY +T  I +++  G V  A      M+D+   P   TF  +
Sbjct: 267 DEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAI 326

Query: 567 MRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           MR   K    +   ++  ++R++  E  I
Sbjct: 327 MRAHVKAGRSEQVLQVHNQMRQLGCEPDI 355


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 223/489 (45%), Gaps = 39/489 (7%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L K L ++  +G VW L +++ +  PQ      F  ++  F     +     +L  MPK+
Sbjct: 27  LFKLLLRVGDYGNVWKLFKDVIRRGPQ-PCKYTFSGIILGFCRKGCIHLGESLLHLMPKF 85

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEA 262
            CEP+ F +  +++A C      +A   F+ M ER   P++  F +++  +CKEG +VEA
Sbjct: 86  HCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEA 145

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           + +   +K+ GF P+ ++YN L++GY +M ++  A  L +EMR+KG  P+  ++ +L+  
Sbjct: 146 RKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSG 205

Query: 323 -----------------------------------LCRMEKMEEANRAFVEMERSGCEAD 347
                                              LC   +++EA    ++M   G    
Sbjct: 206 HYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPS 265

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           ++ + ++I+ + ++   D+ +E    M+  G+ P+  T   +++       L+E  EL+G
Sbjct: 266 IIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIG 325

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M + G   +   + V++    K G++  A ++W EME   + P   +F   + G   QG
Sbjct: 326 QMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQG 385

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            + EA   F EM+ +GL+  P      +L+    +  K+  A  +   +  +G   +++ 
Sbjct: 386 LVEEAYNVFLEMLRKGLI--PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFT 443

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             + I  L   G ++ A +  +DM    + P   T+  L+ G  K ++   A  +  ++ 
Sbjct: 444 TNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMY 503

Query: 588 KMAAERQIT 596
              +   +T
Sbjct: 504 ASGSNPDLT 512



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 182/382 (47%), Gaps = 3/382 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLL 250
           +A+E+L  M + G  P       L   L +        KLF D +R   +P    F+ ++
Sbjct: 4   QALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGII 63

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C++G +   + +L  M     EP+   YN +++     G+ +DA      M  +GC+
Sbjct: 64  LGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCN 123

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P   ++  +I A C+   + EA + F  ++  G   + + Y TL++G+ K R+ID+   +
Sbjct: 124 PTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANML 183

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + M ++GI P+ +T+  ++  H K    E+   L+ ++  +G +PD S +++ +   C 
Sbjct: 184 YEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCW 243

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G L EA+    +M    LSP   +F  ++  +   G   +A E +K MV  GL  +P  
Sbjct: 244 AGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS- 302

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +LL  L    +++ A ++   ++ KG  +N  A+T+ +   F  G V  A S   +
Sbjct: 303 -TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGE 361

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M    + P    F+  + GL K
Sbjct: 362 MERRGIFPDVVAFSAFIDGLSK 383



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 182/396 (45%), Gaps = 18/396 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN +    +Y  L+    KMR+      L EEMRK+   P  IT  + V    ++    
Sbjct: 158 SPNAI----MYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGRE- 212

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             +    +L ++   G  PD  +F   +  LC    + EA +   +M E+   PS+  F 
Sbjct: 213 --EDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFN 270

Query: 248 SLLYGWCKEG---KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           S++  + + G   K  EA  ++V     G  P     ++LL G +  G++ +A EL+ +M
Sbjct: 271 SVIAAYSQAGLEDKAFEAYKLMVHF---GLTPSPSTCSSLLMGLSINGRLQEATELIGQM 327

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             KG   N  ++TVL+    +   +  A   + EMER G   DVV ++  I G  K   +
Sbjct: 328 IEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLV 387

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +  Y +   M+++G++PN   Y  ++    K  +L E ++L   MR  G +PD+   N++
Sbjct: 388 EEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMI 447

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK G ++ A+NV+ +M    LSP   ++  +++G+     ++ A      M   G 
Sbjct: 448 IGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASG- 506

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            S P   T    ++    ++++  A  +   +V+ G
Sbjct: 507 -SNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAG 541



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 1/230 (0%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           EK   +    F +L+ +F     V  A  +  EM + G  PD   F   +D L K   V+
Sbjct: 329 EKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVE 388

Query: 227 EAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           EA  +F EM R+   P+   + SL+ G+CK GKL EA  +   M+  G  PDI   N ++
Sbjct: 389 EAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMII 448

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  + G+M  A  +  +M + G  P+  +Y  LI   C+   M  A+     M  SG  
Sbjct: 449 GGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSN 508

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
            D+ TY   I GFC SR+++R   +LD ++  GIL         + AH K
Sbjct: 509 PDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFSFACPPTLNAHTK 558



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 93/220 (42%), Gaps = 12/220 (5%)

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           + +E++G MR++G  P  S   ++ +L  ++G+      ++ ++      P   +F  ++
Sbjct: 4   QALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGII 63

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            GF  +GC I   E    ++ +     P       ++N+     +   A   ++ ++ +G
Sbjct: 64  LGFCRKGC-IHLGESLLHLMPK-FHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERG 121

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C   V  +   I++    G+V EA      + +    P    +  LM G  K+     A 
Sbjct: 122 CNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQAN 181

Query: 581 EITEKVRKMA-AERQITFKM-------YKRR--GERDLKE 610
            + E++RK   A   ITF +       Y R   G+R LK+
Sbjct: 182 MLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKD 221


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/533 (24%), Positives = 237/533 (44%), Gaps = 70/533 (13%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALI 145
           +R P L LAL   G +LR GL    I       N   +   +A++    V+         
Sbjct: 170 ARRPDLGLAL--FGCILRTGLKMDQIT-----ANTLLKCLCYANRTEEAVNVL------- 215

Query: 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG- 204
             L +M + G V           P  ++   + I+++      M ++A+++L  M K G 
Sbjct: 216 --LHRMSELGCV-----------PNAVS---YSIVLKALCDNSMSQRALDLLQMMAKQGG 259

Query: 205 -CEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEA 262
            C PD   +  ++          +A  LF EM R+  KP +  +  ++   CK   + +A
Sbjct: 260 ACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKA 319

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           + VL QM   G +PD V Y+ ++ GYA +G++ +A ++ +EM+++G  PN  +    + +
Sbjct: 320 ELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLAS 379

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+  + +EA   F  M   G + D+ +Y TL+ G+           + +SM   GI  N
Sbjct: 380 LCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAAN 439

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
              +  ++ A+ K+  +++ + +  EM++ G  PDV  Y+ VI    ++G L +A+  +N
Sbjct: 440 CHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFN 499

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           +M A  + P T  +  ++ GF   G L++A E   EM+ +G +  P      +++NSL +
Sbjct: 500 QMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKG-IPRPDIVFFSSVINSLCK 558

Query: 503 AQKVEMAKDVWS---------------------CIVTK--------------GCELNVYA 527
             +V  A D++                      C+V K              G E ++  
Sbjct: 559 DGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVT 618

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           +   +   F NG + +  +   +M    V P   T+  ++ GL +   R +AA
Sbjct: 619 YNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR-AGRTVAA 670



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/500 (22%), Positives = 219/500 (43%), Gaps = 71/500 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I +L K R       ++ +M  +  Q   T  +  ++  +A+   +K+A ++  EM
Sbjct: 303 YNLIIDALCKARAMDKAELVLRQMTTDGAQ-PDTVTYSCMIHGYATLGRLKEAAKMFREM 361

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K G  P+       L +LCK+   KEAA+ FD M  +  KP +  + +LL+G+  EG  
Sbjct: 362 KKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCF 421

Query: 260 V-----------------------------------EAKYVLVQMKDAGFEPDIVVYNNL 284
                                               +A  +  +M+  G  PD+V Y+ +
Sbjct: 422 ADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTV 481

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +S +++MG++TDA E   +M  +G  PN   Y+ +IQ  C    + +A     EM   G 
Sbjct: 482 ISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGI 541

Query: 345 -EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              D+V ++++I+  CK  ++   ++I D     G  P  +T+  ++  +    ++++  
Sbjct: 542 PRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAF 601

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +++  M  +G  PD+  YN ++    K G + + + ++ EM+   + P T ++ +M+ G 
Sbjct: 602 KILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL 661

Query: 464 LGQGCLIEACEYFKEMVGRG-LLSAPQYG------------------------------- 491
              G  + A + F EM+  G  ++   YG                               
Sbjct: 662 FRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSI 721

Query: 492 -TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
             L  ++N++ + Q+ E AK++++ I   G   N   + + I +L  +G V++A +    
Sbjct: 722 TILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSS 781

Query: 551 MMDADVMPQPDTFAKLMRGL 570
           M  + ++P      +++R L
Sbjct: 782 MEKSGIVPGSRLLNRIIRML 801



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 177/352 (50%), Gaps = 13/352 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I + S+M +         +M  R  +P    T V+  +++ F     + KA E++ 
Sbjct: 478 YSTVISTFSRMGRLTDAMEKFNQMVARGIQPN---TAVYSSIIQGFCMHGGLVKAKELVS 534

Query: 199 EMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFD---EMRERFKPSLRHFTSLLYGWC 254
           EM   G   PD   F  ++++LCK+  V +A  +FD   ++ ER  P +  F SL+ G+C
Sbjct: 535 EMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGER--PGVITFNSLIDGYC 592

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             GK+ +A  +L  M+  G EPDIV YN LL GY + G++ D   L +EM+RKG  PN  
Sbjct: 593 LVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTV 652

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y +++  L R  +   A + F EM  SG    V  Y  ++ G C++   D    +   +
Sbjct: 653 TYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKL 712

Query: 375 IQRGILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
               +    +T L+ M+ A  K +  EE  EL   +   G +P+ S Y V+I    K G 
Sbjct: 713 GTMNV-KFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGG 771

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +++A N+++ ME + + PG+     ++   L +G + +A  Y  ++ G+ +L
Sbjct: 772 VEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRIL 823



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 114/273 (41%), Gaps = 45/273 (16%)

Query: 311 PNANSYTVLIQALCRME-----------------KMEE------------ANRA------ 335
           P   +Y +L+   CR                   KM++            ANR       
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 336 -FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG--ILPNQLTYLHIMLA 392
               M   GC  + V+Y+ ++   C +    R  ++L  M ++G    P+ + Y  ++  
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
              + E  +   L  EM + G  PDV  YN++I   CK   + +A  V  +M      P 
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
           T ++  M+HG+   G L EA + F+EM  RGL+  P   T  + L SL +  + + A + 
Sbjct: 335 TVTYSCMIHGYATLGRLKEAAKMFREMKKRGLI--PNIVTCNSFLASLCKHGRSKEAAEF 392

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
           +  +  KG + +++++   +H     G+  E C
Sbjct: 393 FDSMTAKGHKPDIFSYCTLLH-----GYASEGC 420



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 116/240 (48%), Gaps = 5/240 (2%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE-LMGE 408
           TY  L+   C++R+ D    +   +++ G+  +Q+T   ++         EE V  L+  
Sbjct: 159 TYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHR 218

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQ 466
           M ++GCVP+  +Y++V++  C     + A+++   M  +  + SP   ++  ++HGF  +
Sbjct: 219 MSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNE 278

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G   +AC  F EM  +G+   P   T   ++++L +A+ ++ A+ V   + T G + +  
Sbjct: 279 GETGKACSLFHEMTRQGV--KPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTV 336

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            ++  IH   + G +KEA     +M    ++P   T    +  L K    + AAE  + +
Sbjct: 337 TYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSM 396


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 214/458 (46%), Gaps = 51/458 (11%)

Query: 86  SRLPKLELA------LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW-ASKQPNYVHSY 138
           S LP  ELA      L   GV+  P +    I     AG L     +  A+  P+     
Sbjct: 99  SGLPGAELAAVAARELHGEGVLHHPRVLATAIRVMARAGRLAEASALLDAAPGPDA---- 154

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEV 196
             Y AL+ + S+  +F    A+   M     +P ++T  V + +  + A     K+ +E+
Sbjct: 155 GAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW--KEVVEL 212

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           +  M ++G  PD + +  L+    + +  KEAA++FDEM                     
Sbjct: 213 VASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEM--------------------- 251

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
                        K +GFEPD V +N+LL  Y +  +  +A E+++EM R GC P+  +Y
Sbjct: 252 -------------KASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTY 298

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI +  +   +E+A     EME  G + DVVTYTTLISG  ++ KID      D M++
Sbjct: 299 NSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVR 358

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G  PN  TY  ++  H  + +  E + +  E R  G VPD+  +N ++ +  + G   E
Sbjct: 359 NGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSE 418

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
              V+ EM+ A   P  D++V ++  +   G    A + +K M+  G+   P   T  A+
Sbjct: 419 VSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIY--PDVSTYNAV 476

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           L++L R  + E A+ +++ +  + C+ + Y+++  +H+
Sbjct: 477 LSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 514



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 180/408 (44%), Gaps = 43/408 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +  K  A     +EM +   KP L T   +  L++         + + V D
Sbjct: 333 YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCT---YNALIKMHGVRGKFPEMMAVFD 389

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           E    G  PD   +  LL    +N    E + +F EM++  + P    + SL+  + + G
Sbjct: 390 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 449

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +  +M +AG  PD+  YN +LS  A+ G+   A +L  EM  + C P+  SY+
Sbjct: 450 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 509

Query: 318 VLIQALC---RMEKME--------------------------------EANRAFVEMERS 342
            L+ A     R++KM+                                EA +AF+E+ + 
Sbjct: 510 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 569

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C  D+     ++S + K+R + +  +IL  M +  I  +  TY  +M  + +  + E+C
Sbjct: 570 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 629

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             ++ E++  G  PD  +YN VI    + G++KEA  +++EM+ + L P   ++ + V  
Sbjct: 630 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 689

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           ++      EA E  + MV +G    P   T  +++    R  K+  AK
Sbjct: 690 YVSNSMFEEAIELVRYMVTQG--CKPNERTYNSIVEGYCRNGKLTDAK 735



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 202/477 (42%), Gaps = 78/477 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + +L+    K R+      +++EM +    P ++T   +  L+  +    ++++A+ +  
Sbjct: 263 FNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVT---YNSLISSYVKDGLLEQAVALKQ 319

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +PD   +  L+  L +   +  A   +DEM R   KP+L  + +L+      G
Sbjct: 320 EMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 379

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--------- 308
           K  E   V  + + AGF PDIV +N LL+ + Q G  ++   + KEM++ G         
Sbjct: 380 KFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 439

Query: 309 --------CD------------------PNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                   C                   P+ ++Y  ++ AL R  + E+A + F EME  
Sbjct: 440 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER 499

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C+ D  +Y++L+  +  ++++D+   + D +    I P+      ++L + K   L E 
Sbjct: 500 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEA 559

Query: 403 VELMGEMRKIGCVPDV-----------------------------------SNYNVVIRL 427
            +   E+R+  C  D+                                   + YN ++ +
Sbjct: 560 EKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHM 619

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             +LG+ ++  N+  E++++ + P   S+  +++ +  +G + EA   F EM   GL   
Sbjct: 620 YSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGL--K 677

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           P   T    + S +     E A ++   +VT+GC+ N   +   +     NG + +A
Sbjct: 678 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDA 734


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 220/465 (47%), Gaps = 14/465 (3%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           LIK    M+K      +ME + K  KP +     +  ++  F  A  V  A +VLD M K
Sbjct: 118 LIKGFFNMKKIEKAIQVMEILEKHGKPDVFA---YNAVISGFCKADRVDHASKVLDRMKK 174

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVE 261
            G EPD   +  L+   C    +  A ++ D++ ++  KP++  +T L+     +G + E
Sbjct: 175 RGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDE 234

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A  +L +M   G  PD   YN +++G  + G +  AFE L  + + GC    ++Y +L++
Sbjct: 235 AMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLR 294

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            L    K E   +   +M   GCE + +TY+TLI+  C+  KID    +L  M ++ + P
Sbjct: 295 DLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAP 354

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           +  +Y  ++ A  ++ +++  +E + +M   G +PD+ +YN ++   CK G   EA+N++
Sbjct: 355 DGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIF 414

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            ++      P   S+  +       G  I A     EM+  G+   P   T  +L++ L 
Sbjct: 415 EKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGI--DPDEITYNSLISCLC 472

Query: 502 R----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           R     Q +E+  D++    ++ C+  V ++   +  L     + +A      M++   +
Sbjct: 473 RDGLVDQAIELLVDMFE---SEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCL 529

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKR 602
           P   T+  L++G+     R  A E+   +  M A  + +FK +++
Sbjct: 530 PNETTYTLLIQGIGFAGWRYDAMELANLLVNMDAISEDSFKRFQK 574



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 193/396 (48%), Gaps = 6/396 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F+  + R   +    +++  L  M   G +PD  +   L+        +++A ++ + + 
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILE 139

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           +  KP +  + +++ G+CK  ++  A  VL +MK  GFEPD+V YN L+  +   G++  
Sbjct: 140 KHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDL 199

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A  ++ ++ +  C P   +YT+LI+A      ++EA +   EM   G   D  TY  +++
Sbjct: 200 ALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVN 259

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIGC 414
           G CK   +DR +E L  + + G +    TY  ++  L +E K E  E  +LM +M   GC
Sbjct: 260 GMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGE--KLMSDMLVKGC 317

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+   Y+ +I   C+ G++ EA NV   M+  +L+P   S+  ++     +G +  A E
Sbjct: 318 EPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIE 377

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           +  +M+  G L  P   +  ++L SL +    + A +++  +   GC  N  ++     +
Sbjct: 378 FLDDMISGGHL--PDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGA 435

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           L+S+G    A    L+M+   + P   T+  L+  L
Sbjct: 436 LWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCL 471



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 166/346 (47%), Gaps = 3/346 (0%)

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           +F   L   CK  K  E+ Y L  M + G++PD+++   L+ G+  M K+  A ++++ +
Sbjct: 79  NFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEIL 138

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            + G  P+  +Y  +I   C+ ++++ A++    M++ G E DVVTY  LI  FC   ++
Sbjct: 139 EKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRL 197

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           D    ++D +++    P  +TY  ++ A   +  ++E ++L+ EM   G  PD   YNVV
Sbjct: 198 DLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVV 257

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +   CK G L  A    + +       G  ++ +++   L +G      +   +M+ +G 
Sbjct: 258 VNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKG- 316

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   L+ +L R  K++ AK+V   +  K    + Y++   I +L   G V  A
Sbjct: 317 -CEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLA 375

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
             +  DM+    +P   ++  ++  L K  N   A  I EK+ ++ 
Sbjct: 376 IEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVG 421


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 229/496 (46%), Gaps = 35/496 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+  L K+++F     +M+EM  E   + T      L+        V  A ++++ +
Sbjct: 299 YCTLVLGLCKVQEFEVGAGVMDEM-IELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRV 357

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K G  P  FV+  L+++LCK+    EA  LF EM E+    +   ++ L+  +C+ GKL
Sbjct: 358 KKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKL 417

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A + L +M  AG +  +  YN+L++G+ ++G ++ A     EM  KG  P   SYT L
Sbjct: 418 DTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSL 477

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C   K+ EA R + EM   G   +  T+TTLIS   ++ ++   + + D M+++ +
Sbjct: 478 ISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNM 537

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +PN++TY  ++  H K+    +  EL+ +M + G VPD   Y  +I   C  G + EA  
Sbjct: 538 MPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKK 597

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL--------------- 484
             +++           +  ++HG+  +G L +A    +EMV RG+               
Sbjct: 598 FIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTI 657

Query: 485 ---LSAPQYGTLKALLNSLLRAQK---------------VEMAKDVWSCIVTKGCELNVY 526
               ++  +G LK + +  LR  K               V+ A  +W  ++ +GC  N+ 
Sbjct: 658 KEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIV 717

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            +T  I+ L   G + +A     +M+ ++  P   T+   +  L +  + + A ++   +
Sbjct: 718 TYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM 777

Query: 587 RKMAAERQITFKMYKR 602
            K      +++ +  R
Sbjct: 778 LKGLLANTVSYNILVR 793



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 211/434 (48%), Gaps = 6/434 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y A+I+S  +++ F     +++ M      ++   V+ +L+      + V +A+E+ + 
Sbjct: 230 IYVAVIRSFCELKNFAKAKEMIQRMESSDLNVV---VYNVLIHGLCKNKRVWEAVEIKNG 286

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           + + G    E  +  L+  LCK    +  A + DEM E  F P+    +SL+ G  ++GK
Sbjct: 287 LIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGK 346

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +V+A  ++ ++K  G  P + VYN L++   + GK  +A  L KEM  KG   N  +Y++
Sbjct: 347 VVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSI 406

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI + CR  K++ A     +M  +G +  V  Y +LI+G CK   +       D MI +G
Sbjct: 407 LIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG 466

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P  ++Y  ++  +  K +L E   L  EM   G  P+   +  +I    +   + +A 
Sbjct: 467 LKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAF 526

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +++EM   ++ P   ++ VM+ G   +G  ++A E   +MV +GL+  P   T + L++
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLV--PDTYTYRPLIS 584

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           SL    +V  AK     +  +  +LN   ++  +H     G +++A   C +M+   V  
Sbjct: 585 SLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDM 644

Query: 559 QPDTFAKLMRGLKK 572
               +A L+ G  K
Sbjct: 645 DLVCYAVLIDGTIK 658



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 196/435 (45%), Gaps = 5/435 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY ALI SL K  KF     L +EM  EK        + IL+  F     +  AI  L +
Sbjct: 368 VYNALINSLCKDGKFDEAELLFKEM-GEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGK 426

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G +   + +  L++  CK  ++  A   FDEM ++  KP++  +TSL+ G+C +GK
Sbjct: 427 MIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGK 486

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  +  +M   G  P+   +  L+S   +  +MTDAF L  EM  +   PN  +Y V
Sbjct: 487 LHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNV 546

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I+  C+     +A     +M + G   D  TY  LIS  C + ++    + +D + +  
Sbjct: 547 MIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREH 606

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              N++ Y  ++  + K+  L + + +  EM K G   D+  Y V+I    K  +     
Sbjct: 607 FKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVF 666

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   M    L P    +  M+ G+   G + +A   +  M+  G    P   T   L+N
Sbjct: 667 GLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEG--CTPNIVTYTTLIN 724

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A  ++ A+ +W  ++      N   +  ++  L   G +++A     DM+   ++ 
Sbjct: 725 ELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKG-LLA 783

Query: 559 QPDTFAKLMRGLKKL 573
              ++  L+RG  KL
Sbjct: 784 NTVSYNILVRGFCKL 798



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 209/457 (45%), Gaps = 51/457 (11%)

Query: 85  HSRLPKLELALQHSGVVLRPGLTERVINRCG------DAGNL--GYRYYMWASKQPNYVH 136
           H +L  L  A+     ++  GL   V++         + G L   +R Y   + +    +
Sbjct: 446 HCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPN 505

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIE 195
           +Y  +  LI +L +  +    + L +EM ++   ++  EV + +++          KA E
Sbjct: 506 TY-TFTTLISALFRANRMTDAFRLFDEMLEQ--NMMPNEVTYNVMIEGHCKEGNTVKAFE 562

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           +L++M + G  PD + +  L+ +LC    V EA K  D++ RE FK +   +++LL+G+C
Sbjct: 563 LLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYC 622

Query: 255 KEGKLVEAKYV-----------------------------------LVQMKDAGFEPDIV 279
           KEG+L +A  V                                   L  M D    PD V
Sbjct: 623 KEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKV 682

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           +Y +++ GY++ G +  AF +   M  +GC PN  +YT LI  LC+   M++A   + EM
Sbjct: 683 IYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEM 742

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
             S    + VTY   +    +   +++  ++ + M+ +G+L N ++Y  ++    K   +
Sbjct: 743 LVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRV 801

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           EE  +L+ EM      PD   Y+ +I   C+ G L  A+  W+ M    L P T ++  +
Sbjct: 802 EEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFL 861

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           ++G    G L +A E   +M+ RG+   P   T K+L
Sbjct: 862 IYGCCIAGELGKAFELRDDMIRRGV--KPNQATHKSL 896



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 205/472 (43%), Gaps = 42/472 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K+    A  +  +EM  +  KP +++   +  L+  + +   + +A  +  
Sbjct: 439 YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVS---YTSLISGYCNKGKLHEAFRLYH 495

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+ + F  L+ AL + + + +A +LFDEM E+   P+   +  ++ G CKEG
Sbjct: 496 EMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEG 555

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             V+A  +L QM   G  PD   Y  L+S     G++ +A + + ++ R+    N   Y+
Sbjct: 556 NTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYS 615

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C+  ++ +A     EM + G + D+V Y  LI G  K +     + +L +M  +
Sbjct: 616 ALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQ 675

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + P+++ Y  ++  + K   +++   +   M   GC P++  Y  +I   CK G + +A
Sbjct: 676 RLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKA 735

Query: 438 VNVWNEMEAASLSPG----------------------------------TDSFVVMVHGF 463
             +W EM  ++ +P                                   T S+ ++V GF
Sbjct: 736 ELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGF 795

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G + EA +   EM+   +   P   T   ++    R   ++ A + W  ++ KG + 
Sbjct: 796 CKLGRVEEATKLLDEMIDNAIF--PDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKP 853

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +  A+   I+     G + +A     DM+   V P   T   L  G  + ++
Sbjct: 854 DTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASRKFS 905



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 123/537 (22%), Positives = 213/537 (39%), Gaps = 90/537 (16%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L+P   E+V+    D   L  R++ +     N+ HS   +  LI +L     F    +L+
Sbjct: 69  LKPHHVEKVLLLTLDDTRLALRFFNFLGLHKNFNHSTMSFCILIHALVNANLFWPASSLL 128

Query: 162 EEMRK-----------------EKPQLITTEVFVILMRRF-------------------- 184
           + +                   EK   I++  F +L++ +                    
Sbjct: 129 QTLLLRGGLDPREVFEALLDCFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCE 188

Query: 185 ---------------ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
                          A  R V   + +  E+   G  PD +++  ++ + C+  +  +A 
Sbjct: 189 LMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAK 248

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKL---VEAKYVLVQ------------------ 268
           ++   M E    ++  +  L++G CK  ++   VE K  L+Q                  
Sbjct: 249 EMIQRM-ESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLC 307

Query: 269 --------------MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
                         M + GF P     ++L+ G  + GK+ DAF+L+  +++ G  P+  
Sbjct: 308 KVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLF 367

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            Y  LI +LC+  K +EA   F EM   G  A+ VTY+ LI  FC+  K+D     L  M
Sbjct: 368 VYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKM 427

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           I  GI      Y  ++  H K   L   V    EM   G  P V +Y  +I   C  G+L
Sbjct: 428 IMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKL 487

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA  +++EM    ++P T +F  ++        + +A   F EM+ + ++  P   T  
Sbjct: 488 HEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMM--PNEVTYN 545

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
            ++    +      A ++ + +V KG   + Y +   I SL S G V EA  +  D+
Sbjct: 546 VMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDL 602



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 192/430 (44%), Gaps = 45/430 (10%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           ++  L+K+R+   V  L  E+     +P +    ++V ++R F   +   KA E++  M 
Sbjct: 199 VLNGLAKIRRVDMVLVLFGEILSMGIRPDIY---IYVAVIRSFCELKNFAKAKEMIQRME 255

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
               + +  V+  L+  LCKN  V EA ++ + + ++    S   + +L+ G CK  +  
Sbjct: 256 S--SDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFE 313

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
               V+ +M + GF P     ++L+ G  + GK+ DAF+L+  +++ G  P+        
Sbjct: 314 VGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPS-------- 365

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
                                      +  Y  LI+  CK  K D    +   M ++G+ 
Sbjct: 366 ---------------------------LFVYNALINSLCKDGKFDEAELLFKEMGEKGLC 398

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
            N +TY  ++ +  ++ +L+  +  +G+M   G    V  YN +I   CKLG L  AV+ 
Sbjct: 399 ANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSF 458

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           ++EM    L P   S+  ++ G+  +G L EA   + EM G+G+  AP   T   L+++L
Sbjct: 459 FDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGI--APNTYTFTTLISAL 516

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            RA ++  A  ++  ++ +    N   + + I      G+  +A      M+   ++P  
Sbjct: 517 FRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDT 576

Query: 561 DTFAKLMRGL 570
            T+  L+  L
Sbjct: 577 YTYRPLISSL 586



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 180/398 (45%), Gaps = 22/398 (5%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMP-KYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           +T  F IL+    +A +   A  +L  +  + G +P E VF  LLD   K   +      
Sbjct: 104 STMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPRE-VFEALLDCFEKCDFISSLG-- 160

Query: 232 FDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
                         F  L+  + +E ++ ++  +   M+     P +     +L+G A++
Sbjct: 161 --------------FDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKI 206

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            ++     L  E+   G  P+   Y  +I++ C ++   +A      ME S  + +VV Y
Sbjct: 207 RRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESS--DLNVVVY 264

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             LI G CK++++    EI + +IQ+G+  +++TY  ++L   K +E E    +M EM +
Sbjct: 265 NVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIE 324

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
           +G VP  +  + ++    + G++ +A ++ N ++     P    +  +++     G   E
Sbjct: 325 LGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDE 384

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   FKEM  +GL +     T   L++S  R  K++ A      ++  G ++ VY +   
Sbjct: 385 AELLFKEMGEKGLCANDV--TYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSL 442

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           I+     G++  A S+  +M+D  + P   ++  L+ G
Sbjct: 443 INGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISG 480



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 44/257 (17%)

Query: 140 VYRALIKSLSK---MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           +Y ++I   SK   ++K   +W +M +     P ++T   +  L+     A ++ KA  +
Sbjct: 683 IYTSMIDGYSKAGSVKKAFGIWDIMID-EGCTPNIVT---YTTLINELCKAGLMDKAELL 738

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
             EM      P+   + C LD L +  S+++A +L ++M +    +   +  L+ G+CK 
Sbjct: 739 WKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKL 798

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ EA  +L +M D    PD + Y+ ++    + G +  A E    M  KG  P+  +Y
Sbjct: 799 GRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAY 858

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI                      GC              C + ++ + +E+ D MI+
Sbjct: 859 NFLIY---------------------GC--------------CIAGELGKAFELRDDMIR 883

Query: 377 RGILPNQLTYLHIMLAH 393
           RG+ PNQ T  H  L+H
Sbjct: 884 RGVKPNQAT--HKSLSH 898


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 224/489 (45%), Gaps = 39/489 (7%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L K L ++  +G VW L +++ +  PQ      F  ++  F     +     +L  MPK+
Sbjct: 237 LFKLLLRVGDYGNVWKLFKDVIRRGPQ-PCKYTFSGIILGFCRKGCIHLGESLLHLMPKF 295

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEA 262
            CEP+ F +  +++A C      +A   F+ M ER   P++  F +++  +CKEG +VEA
Sbjct: 296 HCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEA 355

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           + +   +K+ GF P+ ++YN L++GY +M ++  A  L +EMR+KG  P+  ++ +L+  
Sbjct: 356 RKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSG 415

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
             +  + E+ +R   ++   G   D   +   +SG C + ++D   E L  M+++G+ P+
Sbjct: 416 HYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPS 475

Query: 383 QLTYLHIMLAHEK-----------------------------------KEELEECVELMG 407
            + +  ++ A+ +                                      L+E  EL+G
Sbjct: 476 IIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIG 535

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M + G   +   + V++    K G++  A ++W EME   + P   +F   + G   QG
Sbjct: 536 QMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQG 595

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            + EA   F EM+ +GL+  P      +L+    +  K+  A  +   +  +G   +++ 
Sbjct: 596 LVEEAYNVFLEMLRKGLI--PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFT 653

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             + I  L   G ++ A +  +DM    + P   T+  L+ G  K ++   A  +  ++ 
Sbjct: 654 TNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMY 713

Query: 588 KMAAERQIT 596
              +   +T
Sbjct: 714 ASGSNPDLT 722



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 189/394 (47%), Gaps = 3/394 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRER 238
           LMR F +A M  +A+E+L  M + G  P       L   L +        KLF D +R  
Sbjct: 202 LMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRG 261

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P    F+ ++ G+C++G +   + +L  M     EP+   YN +++     G+ +DA 
Sbjct: 262 PQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDAL 321

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
                M  +GC+P   ++  +I A C+   + EA + F  ++  G   + + Y TL++G+
Sbjct: 322 AWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGY 381

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            K R+ID+   + + M ++GI P+ +T+  ++  H K    E+   L+ ++  +G +PD 
Sbjct: 382 VKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDR 441

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
           S +++ +   C  G L EA+    +M    LSP   +F  ++  +   G   +A E +K 
Sbjct: 442 SLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKL 501

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           MV  GL  +P   T  +LL  L    +++ A ++   ++ KG  +N  A+T+ +   F  
Sbjct: 502 MVHFGLTPSPS--TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKR 559

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G V  A S   +M    + P    F+  + GL K
Sbjct: 560 GDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSK 593



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 190/426 (44%), Gaps = 27/426 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN +    +Y  L+    KMR+      L EEMRK+   P  IT  + V    ++    
Sbjct: 368 SPNAI----MYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGRE- 422

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             +    +L ++   G  PD  +F   +  LC    + EA +   +M E+   PS+  F 
Sbjct: 423 --EDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFN 480

Query: 248 SLLYGWCKEG---KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           S++  + + G   K  EA  ++V     G  P     ++LL G +  G++ +A EL+ +M
Sbjct: 481 SVIAAYSQAGLEDKAFEAYKLMVHF---GLTPSPSTCSSLLMGLSINGRLQEATELIGQM 537

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             KG   N  ++TVL+    +   +  A   + EMER G   DVV ++  I G  K   +
Sbjct: 538 IEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLV 597

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +  Y +   M+++G++PN   Y  ++    K  +L E ++L   MR  G +PD+   N++
Sbjct: 598 EEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMI 657

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK G ++ A+NV+ +M    LSP   ++  +++G+     ++ A      M   G 
Sbjct: 658 IGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASG- 716

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            S P   T    ++    ++++  A  +   +V+ G   N   +         N  +   
Sbjct: 717 -SNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTY---------NSMLNGV 766

Query: 545 CSYCLD 550
           CS  LD
Sbjct: 767 CSDILD 772



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 128/294 (43%), Gaps = 2/294 (0%)

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           +E D  V ++L+  +        A E+L  MR  G  P+A+   +L + L R+       
Sbjct: 192 YESDFSVLDSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVW 251

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           + F ++ R G +    T++ +I GFC+   I     +L  M +    PN   Y  ++ A 
Sbjct: 252 KLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINAC 311

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
             +    + +     M + GC P V  +N VI   CK G + EA  +++ ++    SP  
Sbjct: 312 CIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNA 371

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
             +  +++G++    + +A   ++EM  +G+  AP   T   L++   +  + E    + 
Sbjct: 372 IMYNTLMNGYVKMREIDQANMLYEEMRKKGI--APDGITFNILVSGHYKYGREEDGDRLL 429

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             I   G   +   + I +  L   G + EA  + +DM++  + P    F  ++
Sbjct: 430 KDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVI 483



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 12/232 (5%)

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           +M A    E   + +E++G MR++G  P  S   ++ +L  ++G+      ++ ++    
Sbjct: 202 LMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRG 261

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   +F  ++ GF  +GC I   E    ++ +     P       ++N+     +   
Sbjct: 262 PQPCKYTFSGIILGFCRKGC-IHLGESLLHLMPK-FHCEPNAFAYNIVINACCIRGRTSD 319

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A   ++ ++ +GC   V  +   I++    G+V EA      + +    P    +  LM 
Sbjct: 320 ALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMN 379

Query: 569 GLKKLYNRQIAAEITEKVRKMA-AERQITFKM-------YKRR--GERDLKE 610
           G  K+     A  + E++RK   A   ITF +       Y R   G+R LK+
Sbjct: 380 GYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKD 431


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 215/450 (47%), Gaps = 12/450 (2%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + WA  Q  Y H++DVY  LI  L   ++F  +  L+ ++++E        +F+ +M+ +
Sbjct: 89  FQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAF-RESLFICIMKYY 147

Query: 185 ASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
             A +  +A  +L +M   Y CEP    +  +LD L   +    AA +F EM  +   P+
Sbjct: 148 GRANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPT 207

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  F  ++   C   ++  A  +L  M   G  P+ VVY  L+   ++  ++ +A +LL+
Sbjct: 208 VYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLE 267

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM   GC P+ +++  +I  LCR+ ++ E  +    M   G   + +TY  L++G C+  
Sbjct: 268 EMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVG 327

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC-VELMGEMRKIGCVPDVSNY 421
           K+D    +L+ +      PN + +  ++  + K   L+E    L  +M K GC PDV  +
Sbjct: 328 KVDEAQVLLNKVPT----PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTF 383

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   CK G +  AV++ N+M A   +P   ++  ++ GF  +  L EA     EM  
Sbjct: 384 NTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSA 443

Query: 482 RGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
           +G  L+   Y     LL +L +  KV  A D+   +  KGC+ +++ +   I  L     
Sbjct: 444 KGFELNIMGY---NVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDR 500

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++A +   DM+   V+    T+  L+   
Sbjct: 501 KEDALALYRDMLLDGVIANTVTYNTLIHAF 530



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 232/513 (45%), Gaps = 75/513 (14%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V    VY+ LI +LSK  +      L+EEM      L   + F  ++        + 
Sbjct: 241 PNSV----VYQTLIHALSKRDRVNEALKLLEEMFLMG-CLPDVDTFNDVIYGLCRLNRIH 295

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251
           +  +++D M   G  P++  +G L++ LC+   V EA  L +++     P+  HFT L+ 
Sbjct: 296 EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP---TPNDVHFTILIN 352

Query: 252 GWCKEGKLVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           G+ K G+L EA   L  +M   G  PD+  +N L+ G  + G M  A +++ +M   GC 
Sbjct: 353 GYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCT 412

Query: 311 PNANSYTVLIQALCRMEKMEEAN----------------------RAFV----------- 337
           PN  +YT L+   C+  ++EEA                       RA             
Sbjct: 413 PNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDM 472

Query: 338 --EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             EM   GC+ D+ T+ TLI G CK  + +    +   M+  G++ N +TY  ++ A  +
Sbjct: 473 LGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLR 532

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              ++E ++L+ +M   GC  D   YN +I+  CKLG  ++A+ +++EM    L P   S
Sbjct: 533 GGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNIS 592

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
             ++++G    G +  A E  ++M+ RGL  AP   T  +L+N L +   +  A ++++ 
Sbjct: 593 CNLLINGLCRVGKVCNALELLRDMIHRGL--APDVVTYNSLINGLCKMGNIREAFNLFNK 650

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC-LDMMDADVMPQPDTFAKLMRGLKKLY 574
           +  +G + +   +   I            C +C   M D       D +  L+RG++   
Sbjct: 651 LQAEGIQPDAITYNTLI------------CWHCRAGMFD-------DAYLLLLRGVE--- 688

Query: 575 NRQIAAEIT------EKVRKMAAERQITFKMYK 601
           N  I  ++T        ++++  E  I+F   K
Sbjct: 689 NAFIPNDVTWYILVSNFIKEIGKENGISFGTAK 721



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 144/323 (44%), Gaps = 10/323 (3%)

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR-KGCD 310
           G  KE K+++   +L+Q+K+ G      ++  ++  Y +      A  +L +M+    C+
Sbjct: 113 GAAKEFKVIDK--LLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCE 170

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P   SY V++  L        A   F EM   G    V T+  ++   C   ++D    +
Sbjct: 171 PTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M + G +PN + Y  ++ A  K++ + E ++L+ EM  +GC+PDV  +N VI   C+
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           L  + E   + + M     +P   ++ V+++G    G + EA     +      +  P  
Sbjct: 291 LNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNK------VPTPND 344

Query: 491 GTLKALLNSLLRAQKVEMAKD-VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
                L+N  +++ +++ A   ++  ++  GC  +V+ +   IH L   G +  A     
Sbjct: 345 VHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVN 404

Query: 550 DMMDADVMPQPDTFAKLMRGLKK 572
           DM      P   T+  L+ G  K
Sbjct: 405 DMSANGCTPNLITYTTLLDGFCK 427


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 209/408 (51%), Gaps = 10/408 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++K L   +++G V  LM+EM +    P ++T   F  L+       + ++  EVL 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT---FNTLIGYLCRNGLFERVHEVLA 275

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M ++GC PD  ++  ++D +CK   ++ A ++ + M     KP++  + ++L G C   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA+ +L +M       D V +N L+  + Q G +    ELL++M   GC P+  +YT
Sbjct: 336 RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I   C+   ++EA      M   GC+ + V+YT ++ G C + +     E++  MIQ+
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G+ +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTLKAL 496
           + + N M    +SP T  +  +      +G + +  + F  +    + S A  Y    A+
Sbjct: 516 LELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLY---NAV 572

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           ++SL +  + + A D ++ +V+ GC  N   +T+ I  L S G  KEA
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 195/422 (46%), Gaps = 6/422 (1%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           E++DEM +  C P+   F  L+  LC+N   +   ++  +M E    P +R + +++ G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CKEG L  A  +L +M   G +P++V YN +L G     +  +A ELL EM +K C  + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++ +L+   C+   ++       +M   GC  DV+TYTT+I+GFCK   ID    +L S
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  PN ++Y  ++          +  ELM +M + GC P+   +N +I   CK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +++A+ +  +M     SP   S+  ++ G    G   EA E    MV +G+  +P     
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI--SPNTIIY 534

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++  +L R  +V     ++  I       +   +   I SL        A  +   M+ 
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAK 613
              MP   T+  L++GL    +  +A E  E + ++ +   +   + +  G  +  ++  
Sbjct: 595 NGCMPNESTYTMLIKGLA---SEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENG 651

Query: 614 KQ 615
           KQ
Sbjct: 652 KQ 653



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 163/319 (51%), Gaps = 4/319 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++    +  +++   SA   K+A E+L EM +  C  D+  F  L+D  C+N  V  
Sbjct: 318 KPNVVC---YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
             +L ++M      P +  +T+++ G+CKEG + EA  +L  M   G +P+ V Y  +L 
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G    G+  DA EL+ +M ++GC PN  ++  LI  LC+   +E+A     +M  +GC  
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+++Y+T+I G  K+ K +   E+L+ M+ +GI PN + Y  I  A  ++  + + +++ 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             ++      D   YN VI   CK  E   A++ +  M +    P   ++ +++ G   +
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 467 GCLIEACEYFKEMVGRGLL 485
           G   EA E   E+  RG L
Sbjct: 615 GLAKEAQELLSELCSRGAL 633



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 210/462 (45%), Gaps = 19/462 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  ++++  +   F     ++E M  +   L T    ++L         V +A+ +L +
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL-NAICEQGCVDEAVGLLRK 206

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           +  +GCE D   +  +L  LC      +  +L DEM R    P++  F +L+   C+ G 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL 266

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
                 VL QM + G  PDI +Y  ++ G  + G +  A E+L  M   G  PN   Y  
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +++ LC  E+ +EA     EM +  C  D VT+  L+  FC++  +DR  E+L+ M+  G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            +P+ +TY  ++    K+  ++E V L+  M   GC P+  +Y +V++  C  G   +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + ++M      P   +F  +++    +G + +A E  K+M+  G   +P   +   +++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVID 504

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A K E A ++ + +V KG   N   ++    +L   G V +      ++ D  +  
Sbjct: 505 GLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI-- 562

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
                    R    LYN    A I+   ++   +R I F  Y
Sbjct: 563 ---------RSDAVLYN----AVISSLCKRWETDRAIDFFAY 591



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 192/432 (44%), Gaps = 38/432 (8%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F  ++R   +   +  A+EVLDEM   GC P   ++  +L+A C++   + + ++ + M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +       +   +L   C++G + EA  +L ++   G E DIV YN +L G     +  
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D  EL+ EM R  C PN  ++  LI  LCR    E  +    +M   GC  D+  Y T+I
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEE----------- 401
            G CK   ++   EIL+ M   G+ PN + Y   L  + + E+ +E EE           
Sbjct: 294 DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCP 353

Query: 402 ---------------------CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
                                 +EL+ +M   GC+PDV  Y  VI   CK G + EAV +
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
              M +    P T S+ +++ G    G  ++A E   +M+ +G    P   T   L+N L
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG--CPPNPVTFNTLINFL 471

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +   VE A ++   ++  GC  ++ +++  I  L   G  +EA      M++  + P  
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 561 DTFAKLMRGLKK 572
             ++ +   L +
Sbjct: 532 IIYSSIACALSR 543



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 160/397 (40%), Gaps = 75/397 (18%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+C+ G+L  A+ +   +      P+   +  ++ G    G++ DA E+L EM 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMS 138

Query: 306 RKGCDPNANSYTVLIQALCR----------MEKM-------------------------E 330
            KGC P    Y V+++A CR          +E M                         +
Sbjct: 139 FKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVD 198

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA     ++   GCEAD+V+Y  ++ G C +++     E++D M++    PN +T+  ++
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               +    E   E++ +M + GC PD+  Y  +I   CK G L+ A  + N M +  L 
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 451 PGT-----------------------------------DSFVVMVHGFLGQGCLIEACEY 475
           P                                      +F ++V  F   G +    E 
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            ++M+  G +  P   T   ++N   +   ++ A  +   + + GC+ N  ++TI +  L
Sbjct: 379 LEQMLSHGCM--PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            S G   +A      M+     P P TF  L+  L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 124/326 (38%), Gaps = 78/326 (23%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  ++K L    ++     L+ EM +K+ P  +    F IL+  F    +
Sbjct: 318 KPNVV----CYNTVLKGLCSAERWKEAEELLSEMFQKDCP--LDDVTFNILVDFFCQNGL 371

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V + IE+L++M  +GC PD   +  +++  CK   + EA  L   M     KP+   +T 
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGF---------------------------------- 274
           +L G C  G+ V+A+ ++ QM   G                                   
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 275 -EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--------------------- 312
             PD++ Y+ ++ G  + GK  +A ELL  M  KG  PN                     
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 313 --------------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
                         A  Y  +I +LC+  + + A   F  M  +GC  +  TYT LI G 
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQL 384
                     E+L  +  RG L   L
Sbjct: 612 ASEGLAKEAQELLSELCSRGALRKHL 637


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 191/369 (51%), Gaps = 9/369 (2%)

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAA 229
           L     + +L+R    A  ++ A+++L EM +  G  P   ++   + ALCK+  V EA 
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 230 KLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           ++   M++   KP +  F +L+ G CK G+L EA+ VL +M+ +GF  ++V YN L++G 
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEAD 347
           +  G+  +A  +++ M      P+  +Y  +I   C+  +++ A     EM +R+GC  D
Sbjct: 135 SSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVELM 406
             TY+ LI+G CKS  + +  E+L  MI R     + + +  ++  + K ++L+   EL+
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELL 251

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M + GC PDV  Y+ +I   C+ G++ +   +  +M +    P   ++ V+V G    
Sbjct: 252 SSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKA 311

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G ++EAC   K M+  G    P   T   + + L +  K++MA D+ + I  KG   +V 
Sbjct: 312 GKMVEACRLVKRMLEDG--CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVV 369

Query: 527 AWTIWIHSL 535
           A+   + S+
Sbjct: 370 AFETLLLSV 378



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 159/342 (46%), Gaps = 41/342 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+++     +  A   L+ EM ++     T  ++   +     +  V +A+EV+  M
Sbjct: 21  YFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNM 80

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
               C+PD   F  L+  LCK   + EA ++ DEM R  F  +L  + +L+ G    G+ 
Sbjct: 81  KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR-RKGCDPNANSYTV 318
            EA  V+  M      PD   YN ++ G+ + G++  A+  L+EM+ R GC P+  +Y++
Sbjct: 141 GEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSI 197

Query: 319 LIQALCRMEKMEEANRAFVEM--------------------------ERS---------- 342
           LI  LC+   + +A+    EM                          +R+          
Sbjct: 198 LINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEH 257

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  DVVTY+T+I G C+   +D+ + +L+ M+ RG  P+ +TY  ++    K  ++ E 
Sbjct: 258 GCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEA 317

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
             L+  M + GC P+   Y++V    CK+ +L  A ++   +
Sbjct: 318 CRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSI 359



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 139/259 (53%), Gaps = 7/259 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  LS   + G    +M+ M         T+ +  ++  F  +  + +A   L+EM
Sbjct: 127 YNTLINGLSSAGRSGEAVLVMQGMTTTPD----TQTYNAIIHGFCKSGEIDRAYGFLEEM 182

Query: 201 -PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKEG 257
             + GC PD F +  L++ LCK+S++++A +L  EM  R+    S+  F +L+ G+CK  
Sbjct: 183 KQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQ 242

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A+ +L  M + G  PD+V Y+ ++ G  + G +   F LL++M  +GC P+  +YT
Sbjct: 243 DLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYT 302

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VL+  LC+  KM EA R    M   GC  + VTY+ +  G CK  K+D   ++L S+  +
Sbjct: 303 VLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDK 362

Query: 378 GILPNQLTYLHIMLAHEKK 396
           G + + + +  ++L+ +K+
Sbjct: 363 GRVTDVVAFETLLLSVKKR 381



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 8/342 (2%)

Query: 249 LLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L+   C  G+L  A  +L +M +  G  P   +YN  +    + GK+ +A E++K M+  
Sbjct: 24  LVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDG 83

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            C P+  ++  LI  LC+  +++EA +   EMERSG  A++VTY TLI+G   + +    
Sbjct: 84  ACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEA 143

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR-KIGCVPDVSNYNVVIR 426
             ++  M      P+  TY  I+    K  E++     + EM+ + GC PD   Y+++I 
Sbjct: 144 VLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200

Query: 427 LACKLGELKEAVNVWNEMEA-ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             CK   L++A  +  EM           +F  +V G+     L  A E    M+  G  
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG-- 258

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            AP   T   +++ L R   V+    +   +V++GC+ +V  +T+ +  L   G + EAC
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
                M++    P   T++ +  GL K+    +A ++   +R
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIR 360


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 213/421 (50%), Gaps = 15/421 (3%)

Query: 70  FSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRC-GDAGN--LGYRYYM 126
            + DVE ++RI+    S +  L+ +L  +G+ L   L ++V+ R     GN      ++ 
Sbjct: 35  LNDDVEVVYRIITS-SSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHGNPLQALEFFY 93

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           +   +  + H+      ++  L + RKF  +W ++ +M+++   LI+     I++ R A 
Sbjct: 94  YTDNRKGFYHTPYSLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAK 153

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF 246
              V++ +E   +  K+    D   F  LL  LC+  S+ +A  ++  +++ FKP+L+ F
Sbjct: 154 LCSVRQTVESFRKFKKFVSVLDTTCFNALLRTLCQEKSMTDARNVYHRLKKEFKPNLQTF 213

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             LL GW K+ +  EA+    +M++ G +PD+V YN+L+  Y +  +M  A++++++MR 
Sbjct: 214 NILLSGW-KQSE--EAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMRE 270

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +   P+  +YT +I  L  + + ++A     EM+  GC  DV  Y  +I  +C ++++  
Sbjct: 271 EDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIRNYCIAKRLGD 330

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              ++D M  +G+ PN  TY           +L     L   M + GC+P+  +   +IR
Sbjct: 331 ASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESGCLPNTQSCMFLIR 390

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFV----VMVHGFLGQGCLIEACEYFKEMVGR 482
           L  K  +++ A+ +WN+M    +  G  S++    V+       G L+EA + F +M+ +
Sbjct: 391 LFRKHEKVEMALTLWNDM----VEKGFGSYILVSDVLFDLLCDMGKLVEAEKCFLQMIEK 446

Query: 483 G 483
           G
Sbjct: 447 G 447



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 43/310 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           + AL+++L + +       +   ++KE KP L   + F IL+   +  +  ++A    +E
Sbjct: 179 FNALLRTLCQEKSMTDARNVYHRLKKEFKPNL---QTFNILL---SGWKQSEEAELFFEE 232

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G +PD   +  L+D  CK+  +++A K+ ++MRE    P +  +TS++ G    G+
Sbjct: 233 MRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQ 292

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK----------- 307
             +A+ +L +MK+ G  PD+  YN ++  Y    ++ DA  L+ EM  K           
Sbjct: 293 PDKARDILNEMKEYGCYPDVAAYNAVIRNYCIAKRLGDASNLMDEMASKGLSPNATTYNL 352

Query: 308 ------------------------GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
                                   GC PN  S   LI+   + EK+E A   + +M   G
Sbjct: 353 FFRVFYWSNDLRNSWSLYRRMMESGCLPNTQSCMFLIRLFRKHEKVEMALTLWNDMVEKG 412

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
             + ++    L    C   K+    +    MI++G  P+ +++  I +  E   + +  +
Sbjct: 413 FGSYILVSDVLFDLLCDMGKLVEAEKCFLQMIEKGHKPSNVSFRRIKVLMELVNKHDALL 472

Query: 404 ELMGEMRKIG 413
            L  +M   G
Sbjct: 473 NLQKKMAIFG 482


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 212/435 (48%), Gaps = 8/435 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  L+ +++KM KF  V +L E M+  +   I+ +++   IL+  F     +  A+ VL 
Sbjct: 83  FNKLLSAIAKMNKFDLVISLGERMQNLR---ISYDLYSYNILINCFCRRSQLPLALAVLG 139

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K G EPD      LL+  C    + EA  L D+M    ++P+   F +L++G     
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHN 199

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  ++ +M   G +PD+  Y  +++G  + G +  A  LLK+M +   + +   YT
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT 259

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I ALC  + + +A   F EM+  G   +VVTY +LI   C   +      +L  MI+R
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +T+  ++ A  K+ +L E  +L  EM K    PD+  Y+ +I   C    L EA
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +++  M +    P   ++  ++ GF     + E  E F+EM  RGL+      T   L+
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV--TYNTLI 437

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L +A   +MA+ ++  +V+ G   ++  ++I +  L   G +++A      +  + + 
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 558 PQPDTFAKLMRGLKK 572
           P   T+  ++ G+ K
Sbjct: 498 PDIYTYNIMIEGMCK 512



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 190/380 (50%), Gaps = 8/380 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  ++  L K        +L+++M K K +     ++  ++    + + V  A+ +  EM
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIE-ADVVIYTTIIDALCNYKNVNDALNLFTEM 281

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  P+   +  L+  LC      +A++L  +M ER   P++  F++L+  + KEGKL
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           VEA+ +  +M     +PDI  Y++L++G+    ++ +A  + + M  K C PN  +Y  L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+  C+ +++EE    F EM + G   + VTY TLI G  ++   D   +I   M+  G+
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    K  +LE+ + +   ++K    PD+  YN++I   CK G++++  +
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  +    + P    +  M+ GF  +G   EA   F+EM   G L  P  GT   L+ +
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL--PNSGTYNTLIRA 579

Query: 500 LLR----AQKVEMAKDVWSC 515
            LR    A   E+ K++ SC
Sbjct: 580 RLRDGDKAASAELIKEMRSC 599



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 199/439 (45%), Gaps = 10/439 (2%)

Query: 137 SYDVY--RALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKK 192
           SYD+Y    LI    +  +     A++ +M K   +P ++T      L+  +   + + +
Sbjct: 112 SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS---LLNGYCHGKRISE 168

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+ ++D+M     +P+   F  L+  L  ++   EA  L D M  R  +P L  + +++ 
Sbjct: 169 AVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 228

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G +  A  +L +M+    E D+V+Y  ++        + DA  L  EM  KG  P
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP 288

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  +Y  LI+ LC   +  +A+R   +M       +VVT++ LI  F K  K+    ++ 
Sbjct: 289 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 348

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D MI+R I P+  TY  ++      + L+E   +   M    C P+V  YN +I+  CK 
Sbjct: 349 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 408

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             ++E + ++ EM    L   T ++  ++ G    G    A + FK+MV  G+   P   
Sbjct: 409 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV--PPDII 466

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   LL+ L +  K+E A  V+  +     E ++Y + I I  +   G V++       +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 552 MDADVMPQPDTFAKLMRGL 570
               V P    +  ++ G 
Sbjct: 527 SLKGVKPNVIIYTTMISGF 545



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 186/395 (47%), Gaps = 3/395 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           A+++  EM +    P    F  LL A+ K +       L + M+  R    L  +  L+ 
Sbjct: 64  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 123

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +C+  +L  A  VL +M   G+EPDIV  ++LL+GY    ++++A  L+ +M      P
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 183

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  ++  LI  L    K  EA      M   GC+ D+ TY T+++G CK   ID    +L
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 243

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M +  I  + + Y  I+ A    + + + + L  EM   G  P+V  YN +IR  C  
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 303

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G   +A  + ++M    ++P   +F  ++  F+ +G L+EA + + EM+ R +   P   
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIF 361

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L+N      +++ AK ++  +++K C  NV  +   I        V+E      +M
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               ++    T+  L++GL +  +  +A +I +K+
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 141/316 (44%), Gaps = 8/316 (2%)

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL +A  +  +M  +   P IV +N LLS  A+M K      L + M+      +  SY 
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   CR  ++  A     +M + G E D+VT ++L++G+C  ++I     ++D M   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 378 GILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              PN +T+   +H +  H K     E V L+  M   GC PD+  Y  V+   CK G++
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKA---SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
             A+++  +ME   +      +  ++        + +A   F EM  +G+   P   T  
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI--RPNVVTYN 294

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           +L+  L    +   A  + S ++ +    NV  ++  I +    G + EA     +M+  
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 555 DVMPQPDTFAKLMRGL 570
            + P   T++ L+ G 
Sbjct: 355 SIDPDIFTYSSLINGF 370



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 2/200 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ V+L GEM +   +P +  +N ++    K+ +    +++   M+   +S    S+ 
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++++ F  +  L  A     +M+  G    P   TL +LLN     +++  A  +   + 
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGY--EPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
               + N   +   IH LF +    EA +    M+     P   T+  ++ GL K  +  
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237

Query: 578 IAAEITEKVRKMAAERQITF 597
           +A  + +K+ K   E  +  
Sbjct: 238 LALSLLKKMEKGKIEADVVI 257


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 235/528 (44%), Gaps = 31/528 (5%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELA--LQHSGVVLRPGLTERVINRCGDAGNLGYRYY 125
           N F   V KI  IL       PK E +  L H    L+P     ++    +  ++  R++
Sbjct: 45  NPFPELVSKISTILSS-----PKWEHSSELCHLSPKLKPHHVVNILQTHKNTDSV-LRFF 98

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGA--------------------VWALMEEMR 165
            W S++  + H    + +++  L + R F                      V   + E+ 
Sbjct: 99  FWISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEIN 158

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
            +     T   F  L+ +     MV  A ++  +M   G  P    F  +++ LCK   V
Sbjct: 159 SKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRV 218

Query: 226 KEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
           +EA  +   + R    P+   +TSL+ G C+   L  A  +  +M   G +P+ V Y+ L
Sbjct: 219 QEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTL 278

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           ++G    G++ +A ++L+EM +KG +P   +YT+ + +LC      EA     +M++ GC
Sbjct: 279 INGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGC 338

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             ++ T+T LISG  +  K +    +   M+  G++P  +TY  ++     +   E    
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFT 398

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   G +P    YN +I+  C +G++++A+ ++++M  A  SP   ++  +++G+ 
Sbjct: 399 IFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYC 458

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            QG L  A    + M G GL   P   T   L++   R  K+E A  ++  ++  G   N
Sbjct: 459 KQGNLNNAMRLLEIMKGNGL--KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +T  I   F+   V +A +    M+++  +P   T+  ++ G  K
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 198/422 (46%), Gaps = 6/422 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L+T   F  ++        V++A  ++  + +Y   P+ F +  L+   C+N ++  
Sbjct: 199 RPSLLT---FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +FD M ++   P+   +++L+ G C EG+L EA  +L +M   G EP +  Y   L 
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
                G  ++A ELL +M+++GC PN  ++T LI  L R  K E A   + +M   G   
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             VTY  LI+  C   + +  + I   M+  G LP+  TY  I+       ++++ + + 
Sbjct: 376 TTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIF 435

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M K G  P+V  YN +I   CK G L  A+ +   M+   L P   ++  ++ GF   
Sbjct: 436 DKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRG 495

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A   F  M+  G+  +P + T  A+++      KV+ A  ++  +V  G   +  
Sbjct: 496 GKLEHATSLFYGMMEHGI--SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            + + I        + EA ++C  M+   ++P   T+   + GL +     +A +I  ++
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 587 RK 588
            K
Sbjct: 614 EK 615



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 192/442 (43%), Gaps = 12/442 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  LI  L    +      ++EEM ++  +  T   + I +     A    
Sbjct: 270 PNSV----TYSTLINGLCSEGRLEEAMDMLEEMVQKGIE-PTVYTYTIPLVSLCDAGCSS 324

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           +A+E+L +M K GC P+   F  L+  L ++   + A  L+ +M  +   P+   + +L+
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
              C EG+   A  +   M   G  P    YN ++  +  MG +  A  +  +M + G  
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  LI   C+   +  A R    M+ +G + D  TYT LISGF +  K++    +
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSL 504

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M++ GI PN +TY  I+  +    ++++ + L  +M + G +P    YNV+I    K
Sbjct: 505 FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              + EA N   +M    L P   ++   + G    G    A + F EM  R     P  
Sbjct: 565 TNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF--PNL 622

Query: 491 GTLKALLNSLL---RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
            T  +L+  L    RA+  EM  ++ + +   GCE NV  +T  +  L   G   EA   
Sbjct: 623 YTYSSLIYGLCQEGRAEDAEMY-NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQL 681

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
            + M    + P  + +  L+ G
Sbjct: 682 VVSMQKKGLQPSEEIYRALLIG 703



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 190/413 (46%), Gaps = 6/413 (1%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           V +   + ALI  LS+  KF     L  +M  +   + TT  +  L+ +       + A 
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG-LVPTTVTYNALINQLCVEGRFETAF 397

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
            +   M  +G  P    +  ++   C    +++A  +FD+M +    P++  + +L+YG+
Sbjct: 398 TIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGY 457

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+G L  A  +L  MK  G +PD   Y  L+SG+++ GK+  A  L   M   G  PN 
Sbjct: 458 CKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNH 517

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +YT +I     + K+++A   F +M  SG      TY  +ISGF K+  I         
Sbjct: 518 VTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGK 577

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+++G+LPN +TY   +    +        ++  EM K    P++  Y+ +I   C+ G 
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGR 637

Query: 434 LKEA--VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            ++A   N+   +      P  D++  +V G  G+G   EA +    M  +GL   P   
Sbjct: 638 AEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGL--QPSEE 695

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +ALL    +  KVE A +++  + T G +L++  +   I +L     ++EA
Sbjct: 696 IYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEA 748



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 196/439 (44%), Gaps = 10/439 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y ALI  L    +F   + + + M      L +T+ +  +++ F     ++KA+ + D+
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHG-SLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M K G  P+   +  L+   CK  ++  A +L + M+    KP    +T L+ G+ + GK
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L  A  +   M + G  P+ V Y  ++ GY  + K+ DA  L  +M   G  P++ +Y V
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNV 557

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I    +   + EA     +M + G   +V+TYT+ I G C++ +    ++I   M +R 
Sbjct: 558 MISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617

Query: 379 ILPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
             PN  TY  ++  L  E + E  E   L+  +   GC P+V  Y  +++  C  G   E
Sbjct: 618 YFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYE 677

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKA 495
           A  +   M+   L P  + +  ++ G      +  A   F  M   G  L    Y   KA
Sbjct: 678 ADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDY---KA 734

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA- 554
           L+ +L +   +E A+ ++  ++ K    +   WT+ +  L   G   + C   L +M++ 
Sbjct: 735 LICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGET-DLCLKLLHVMESR 793

Query: 555 DVMPQPDTFAKLMRGLKKL 573
           +      T+  L R L  L
Sbjct: 794 NCTLNFQTYVMLARELSAL 812



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 11/313 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN+V     Y A+I     + K     AL  +M  E   L +++ + +++  F+    +
Sbjct: 514 SPNHV----TYTAIIDGYFNLAKVDDALALFWKM-VESGNLPSSQTYNVMISGFSKTNSI 568

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A     +M K G  P+   +   +D LC+N     A K+F EM +R + P+L  ++SL
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSL 628

Query: 250 LYGWCKEGKLVEAKY--VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +YG C+EG+  +A+   +L ++   G EP++  Y  L+ G    G+  +A +L+  M++K
Sbjct: 629 IYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKK 688

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+   Y  L+   C+  K+E A   F  M+  G +  +  Y  LI   CK   I+  
Sbjct: 689 GLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEA 748

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             I  +M+++    +++ +  ++    K+ E + C++L+  M    C     N+   + L
Sbjct: 749 QCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNC---TLNFQTYVML 805

Query: 428 ACKLGELKEAVNV 440
           A +L  L  A+ +
Sbjct: 806 ARELSALDCAIKI 818



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 152/337 (45%), Gaps = 8/337 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI   S+  K     +L   M +    P  +T   +  ++  + +   V  A+ + 
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT---YTAIIDGYFNLAKVDDALALF 540

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            +M + G  P    +  ++    K +S+ EA     +M ++   P++  +TS + G C+ 
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA--FELLKEMRRKGCDPNAN 314
           G+   A  +  +M+   + P++  Y++L+ G  Q G+  DA  + LL  +   GC+PN +
Sbjct: 601 GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT L++ LC   +  EA++  V M++ G +     Y  L+ G CK+ K++    I  SM
Sbjct: 661 TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSM 720

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              G   +   Y  ++ A  K+  +EE   +   M +     D   + V++    K GE 
Sbjct: 721 DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGET 780

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
              + + + ME+ + +    ++V++        C I+
Sbjct: 781 DLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIK 817


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 232/518 (44%), Gaps = 21/518 (4%)

Query: 87  RLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIK 146
           R P  E  L  S   L P L +  + R     +     +  A  +P+ V     +  L+ 
Sbjct: 54  RFPAAERLLASSSP-LTPALLQAALRRVRLDPDAALHLFRLAPSRPSLVS----HAQLLH 108

Query: 147 SLSKMRKFGAVWALMEEMRKEK----PQL--------ITTEVFVILMRRFASARMVKKAI 194
            L++ R+F    AL+  +        P L         +   F +L+R  A A  +  A+
Sbjct: 109 ILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSAL 168

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGW 253
            V D M K GC P       LL+ L ++     AA ++ +MR     P       +   +
Sbjct: 169 NVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAY 228

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C++G++ +A   + +M+  G E ++V Y+ ++  Y  MG   DA  +L+ ++RKG  PN 
Sbjct: 229 CRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNV 288

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILD 372
            +YT+L++  C+  +MEEA R   EM+ +G    D V Y  +I+G+C+  ++D    + +
Sbjct: 289 VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRN 348

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M   GI  N   Y  ++    K   +EE  +++ EM  +G  PD  +YN +I   C+ G
Sbjct: 349 EMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREG 408

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +++A  +   M    L+  T ++  ++ GF     + +A   +  M+ RG+  AP   +
Sbjct: 409 SMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGV--APNEIS 466

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              LL+ L +A K E A ++W   + +G   NV  +   I+ L   G + EA      M 
Sbjct: 467 CSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMK 526

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           +    P   T+  L  G  KL     A  +  K+  + 
Sbjct: 527 ELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 225/499 (45%), Gaps = 12/499 (2%)

Query: 78  FRILKKFHSRLPKLELALQ----HSGVVLRPGL--TERVINRCGDAGNLGYRYYMWASKQ 131
           F +L + H+   +L  AL        V  RP L    R++N+   +G+ G    ++   +
Sbjct: 151 FDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMR 210

Query: 132 PNYVHSYDVYRALI-KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
              V   +   A++ K+  +  +       +EEM     + +    +  +M  +      
Sbjct: 211 IAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLE-VNLVAYHAVMDCYCGMGWT 269

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--FTS 248
           + A  +L+ + + G  P+   +  L+   CK+  ++EA ++  EM+E     +    +  
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGM 329

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G+C+ G++ +A  V  +M+DAG   ++ VYN +++G  ++G+M +  ++L+EM   G
Sbjct: 330 MINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVG 389

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  SY  LI   CR   M +A      M R+G  A  +TY TL+ GFC    ID   
Sbjct: 390 MRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDAL 449

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   M++RG+ PN+++   ++    K  + E+ + L  E    G   +V  +N VI   
Sbjct: 450 RLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGL 509

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK+G + EA  + + M+     P + ++  +  G+   G L  A     +M   G   AP
Sbjct: 510 CKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGF--AP 567

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                 + +     A++     D+ S +  +G   N+  +   I      G++ EAC+  
Sbjct: 568 SVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLY 627

Query: 549 LDMMDADVMPQPDTFAKLM 567
            +M++  + P     + LM
Sbjct: 628 FEMVNNGMNPNVFICSALM 646



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 206/467 (44%), Gaps = 35/467 (7%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARM 189
            PN V     Y  L+K   K  +      +++EM KE   ++  EV + +++  +     
Sbjct: 285 SPNVV----TYTLLVKGYCKDGRMEEAERVVKEM-KETGDIVVDEVAYGMMINGYCQRGR 339

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           +  A  V +EM   G   + FV+  +++ LCK   ++E  K+  EM +   +P    + +
Sbjct: 340 MDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNT 399

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C+EG + +A  +   M   G     + YN LL G+  +  + DA  L   M ++G
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  S + L+  L +  K E+A   + E    G   +V+T+ T+I+G CK  ++    
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAE 519

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+LD M +    P+ LTY  +   + K  +L     LM +M  +G  P V  +N  I   
Sbjct: 520 ELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGH 579

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
               +  +  ++ +EM A  LSP   ++  ++ G+  +G L EAC  + EMV  G+   P
Sbjct: 580 FIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGM--NP 637

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVT----KGCELNV------------------- 525
                 AL++   +  KV+ A  V   +V      GC ++                    
Sbjct: 638 NVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPH 697

Query: 526 ---YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
                W + I  L  +G + +A S    + +   +P   T++ L+ G
Sbjct: 698 SANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHG 744



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 176/403 (43%), Gaps = 25/403 (6%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
           +VL EM   G  PD++ +  L+D  C+  S+++A ++   M R     +   + +LL G+
Sbjct: 380 KVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGF 439

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C    + +A  +   M   G  P+ +  + LL G  + GK   A  L KE   +G   N 
Sbjct: 440 CSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNV 499

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++  +I  LC++ +M EA      M+   C  D +TY TL  G+CK  ++     +++ 
Sbjct: 500 ITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  P+   +   +  H   ++  +  ++  EM   G  P++  Y  +I   CK G 
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L EA N++ EM    ++P       ++  F  +G + EA    +++V   ++      T+
Sbjct: 620 LHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTI 679

Query: 494 K------------------------ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
           +                         ++  L ++ ++  AK ++  +  K    + + ++
Sbjct: 680 EIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYS 739

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             IH   ++G + EA S    M+ A + P   T+  L+ GL K
Sbjct: 740 SLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCK 782



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 161/383 (42%), Gaps = 78/383 (20%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           + +A E+LD M +  C PD   +  L D  CK   +  A  L ++M    F PS+  F S
Sbjct: 515 MAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNS 574

Query: 249 -----------------------------------LLYGWCKEGKLVEAKYVLVQMKDAG 273
                                              L+ GWCKEG L EA  +  +M + G
Sbjct: 575 FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNG 634

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR----KGC------------------DP 311
             P++ + + L+S + + GK+ +A  +L+++       GC                  D 
Sbjct: 635 MNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADG 694

Query: 312 NANS----YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           N +S    + V+I  LC+  ++ +A   F  +       D  TY++LI G   S  ID  
Sbjct: 695 NPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEA 754

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + + D M+  G+ PN +TY  ++    K  +L   V L  +++  G  P+   YN +I  
Sbjct: 755 FSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDE 814

Query: 428 ACKLGE----------------LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            CK G+                ++EA+ + ++M   ++ P   ++  ++HG++  G + E
Sbjct: 815 YCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEE 874

Query: 472 ACEYFKEMVGRGLLSAPQYGTLK 494
             + + EM  RGLL     G  K
Sbjct: 875 ISKLYDEMHIRGLLPTNWIGNWK 897


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 193/394 (48%), Gaps = 8/394 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A +E +R+   +L+  +V  +  ++      + V  A ++  
Sbjct: 178 YGTLINGLCKV---GETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYS 234

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM       +   +  L+   C    +K+A  LF++M  E   P +  F  L+  +CKEG
Sbjct: 235 EMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEG 294

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EAK  L  M   G +PDIV YN+L+ GY  + ++  A  +L  M  +G      SY 
Sbjct: 295 RVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYN 354

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++ +++A + F EM       +V+TY +LI G CKS +I    E++D M  R
Sbjct: 355 IVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDR 414

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ +TY  I+ A  K   +++ + L+ +++  G  P++  Y ++I   CK G L++A
Sbjct: 415 GQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 474

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            N++ ++     +   +++ VM+ GF   G   EA     +M     +  P   T + ++
Sbjct: 475 RNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCI--PDAITYEIII 532

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
            SL    + + A+ +   ++T+G   +   +  W
Sbjct: 533 CSLFDKDENDKAEKLLREMITRGLLYSFLEYGSW 566



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 211/443 (47%), Gaps = 12/443 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASAR 188
           +PN+V+    +  LI    ++      ++++ ++ K   +P  IT   F+   + F    
Sbjct: 102 KPNFVN----FNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFI---KGFCLKG 154

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
            + +A+   D++   G   D+  +G L++ LCK    + A +L   +  +  +  +  ++
Sbjct: 155 QIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYS 214

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   CK+  + +A  +  +M       +IV Y+ L+SG+  +GK+ DA  L  +M  +
Sbjct: 215 TIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSE 274

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
             +P+  ++ +L+ A C+  +++EA      M + G + D+VTY +L+ G+C   +++  
Sbjct: 275 NINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMA 334

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             IL++M  RG+     +Y  ++    K + +++ ++L  EM      P+V  YN +I  
Sbjct: 335 KSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDG 394

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G +  A+ + + M      P   ++  ++        + +A     ++  +G+   
Sbjct: 395 LCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGI--R 452

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L++ L +  ++E A++++  ++ KG  L V  +T+ I    S+G   EA S 
Sbjct: 453 PNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSL 512

Query: 548 CLDMMDADVMPQPDTFAKLMRGL 570
              M D   +P   T+  ++  L
Sbjct: 513 LSKMKDNSCIPDAITYEIIICSL 535



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 197/433 (45%), Gaps = 8/433 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL K + +  V +L ++M  R  KP  +    F IL+  F    ++  A  VL 
Sbjct: 73  FGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVN---FNILINCFCQLGLIPFAFSVLA 129

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++ K G EPD       +   C    + +A    D++    F      + +L+ G CK G
Sbjct: 130 KILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVG 189

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A  +L ++     + D+V+Y+ ++    +   + DAF+L  EM  +    N  +Y+
Sbjct: 190 ETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYS 249

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C + K+++A   F +M       DV T+  L+  FCK  ++      L  M+++
Sbjct: 250 ALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQ 309

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+ +TY  +M  +    E+     ++  M   G    V +YN+VI   CK+  + +A
Sbjct: 310 GIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQA 369

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + ++ EM    + P   ++  ++ G    G +  A E    M  RG    P   T  ++L
Sbjct: 370 MKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRG--QQPDIITYSSIL 427

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++L +   V+ A  +   +  +G   N+Y +TI I  L   G +++A +   D++     
Sbjct: 428 DALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYN 487

Query: 558 PQPDTFAKLMRGL 570
              +T+  +++G 
Sbjct: 488 LTVNTYTVMIQGF 500



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 146/325 (44%), Gaps = 46/325 (14%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T   + I++  F   +MV +A+++  EM      P+   +  L+D LCK+  +  A +L 
Sbjct: 349 TVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELI 408

Query: 233 DEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           D M +R + P +  ++S+L   CK   + +A  +L+++KD G  P++  Y  L+ G  + 
Sbjct: 409 DLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKG 468

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G++ DA  + +++  KG +   N+YTV+IQ  C     +EA     +M+ + C  D +TY
Sbjct: 469 GRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITY 528

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY----LHIMLAHE---KKEELE---- 400
             +I       + D+  ++L  MI RG+L + L Y    L  M A       + L+    
Sbjct: 529 EIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSS 588

Query: 401 ----------------ECVELMGEMR------------------KIGCVPDVSNYNVVIR 426
                           +CV     MR                  K G + DV+ Y V+I+
Sbjct: 589 QESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQ 648

Query: 427 LACKLGELKEAVNVWNEMEAASLSP 451
             C  G   E++ + ++ME     P
Sbjct: 649 GFCSHGLFDESLALLSKMEVNGCIP 673



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 179/382 (46%), Gaps = 15/382 (3%)

Query: 221 KNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEGKLVEAKY------VLVQMKDAG 273
            N+ V +A  LF+  +R+   P    F  +L      G LV++K+      +  +M+  G
Sbjct: 47  NNNDVVDAVSLFNCLLRQNPTPPDMEFGQIL------GSLVKSKHYHTVLSLFQKMEYRG 100

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
            +P+ V +N L++ + Q+G +  AF +L ++ + G +P+  +    I+  C   ++ +A 
Sbjct: 101 IKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQAL 160

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               ++   G   D V+Y TLI+G CK  +     E+L  +  + +  + + Y  I+ + 
Sbjct: 161 NFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSM 220

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K + + +  +L  EM       ++  Y+ +I   C +G+LK+A+ ++N+M + +++P  
Sbjct: 221 CKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDV 280

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            +F ++V  F  +G + EA      M+ +G+   P   T  +L++      +V MAK + 
Sbjct: 281 YTFNILVDAFCKEGRVKEAKNGLAMMMKQGI--KPDIVTYNSLMDGYCLVNEVNMAKSIL 338

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           + +  +G    V ++ I I+       V +A     +M    + P   T+  L+ GL K 
Sbjct: 339 NTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKS 398

Query: 574 YNRQIAAEITEKVRKMAAERQI 595
                A E+ + +     +  I
Sbjct: 399 GRISYALELIDLMHDRGQQPDI 420



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 138/314 (43%), Gaps = 40/314 (12%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN +     Y +LI  L K  +      L++ M  R ++P +IT   +  ++       +
Sbjct: 383 PNVI----TYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIIT---YSSILDALCKNHL 435

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V KAI +L ++   G  P+ + +  L+D LCK   +++A  +F+++  + +  ++  +T 
Sbjct: 436 VDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTV 495

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G+C  G   EA  +L +MKD    PD + Y  ++       +   A +LL+EM  +G
Sbjct: 496 MIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRG 555

Query: 309 CDPN-------------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
              +             A ++ +   +L      E  N A + +ER  C+  V+T     
Sbjct: 556 LLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDC-VLT----- 609

Query: 356 SGFCKSRKIDRCYEILDSMI-------QRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
               KS   D+  E    +I       ++G + +  TY  ++         +E + L+ +
Sbjct: 610 ----KSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSK 665

Query: 409 MRKIGCVPDVSNYN 422
           M   GC+PD   Y+
Sbjct: 666 MEVNGCIPDAVTYD 679


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 219/446 (49%), Gaps = 16/446 (3%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           LR GL +    +  DA +L +R  + +   P  +     +  L  +++K +++  V AL 
Sbjct: 158 LRSGLVDI---KADDAIDL-FRDMIHSRPLPTVID----FSRLFSAIAKTKQYDLVLALC 209

Query: 162 EEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           ++M  +    I   ++   I++  F   R +  A   + ++ K G EP+   F  L++ L
Sbjct: 210 KQMELKG---IAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGL 266

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C    V EA +L D M E   KP L    +L+ G C  GK  EA  ++ +M + G +P+ 
Sbjct: 267 CLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 326

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V Y  +L+   + G+   A ELL++M  +    +A  Y+++I  LC+   ++ A   F E
Sbjct: 327 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 386

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME  G   +++TY  LI GFC + + D   ++L  MI+R I PN +T+  ++ +  K+ +
Sbjct: 387 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 446

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L E  EL  EM   G  PD   Y  +I   CK   L +A  + + M +    P   +F +
Sbjct: 447 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 506

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           +++G+     + +  E F++M  RG+++     T   L+       K+ +AK+++  +V+
Sbjct: 507 LINGYCKANRIDDGLELFRKMSLRGVVA--DTVTYNTLIQGFCELGKLNVAKELFQEMVS 564

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEA 544
           +    N+  + I +  L  NG  ++A
Sbjct: 565 RKVPPNIVTYKILLDGLCDNGESEKA 590



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 178/374 (47%), Gaps = 12/374 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASAR 188
           QPN V    V   + KS       G     ME +RK + + I  +   + I++       
Sbjct: 323 QPNAVTYGPVLNVMCKS-------GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 375

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFT 247
            +  A  + +EM   G   +   +  L+   C      + AKL  D ++ +  P++  F+
Sbjct: 376 SLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFS 435

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+  + KEGKL EA+ +  +M   G  PD + Y +L+ G+ +   +  A +++  M  K
Sbjct: 436 VLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 495

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GCDPN  ++ +LI   C+  ++++    F +M   G  AD VTY TLI GFC+  K++  
Sbjct: 496 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 555

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+   M+ R + PN +TY  ++       E E+ +E+  ++ K     D+  YN++I  
Sbjct: 556 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 615

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C   ++ +A +++  +    + PG  ++ +M+ G   +G L EA   F++M   G   A
Sbjct: 616 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG--HA 673

Query: 488 PQYGTLKALLNSLL 501
           P   T   L+ + L
Sbjct: 674 PDGWTYNILIRAHL 687



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 155/314 (49%), Gaps = 6/314 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI       ++     L+ +M  RK  P ++T   F +L+  F     +++A E+ 
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT---FSVLIDSFVKEGKLREAEELH 454

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKE 256
            EM   G  PD   +  L+D  CK + + +A ++ D M  +   P++R F  L+ G+CK 
Sbjct: 455 KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 514

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +   +  +M   G   D V YN L+ G+ ++GK+  A EL +EM  +   PN  +Y
Sbjct: 515 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 574

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC   + E+A   F ++E+S  E D+  Y  +I G C + K+D  +++  S+  
Sbjct: 575 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 634

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ P   TY  ++    KK  L E   L  +M + G  PD   YN++IR     G+  +
Sbjct: 635 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATK 694

Query: 437 AVNVWNEMEAASLS 450
           +V +  E++    S
Sbjct: 695 SVKLIEELKRCGFS 708



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 192/442 (43%), Gaps = 40/442 (9%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L  +M   +P L T   F  L    A  +     + +  +M   G   + +    +++  
Sbjct: 173 LFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCF 231

Query: 220 CKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           C+   +  A     ++ +  ++P+   F++L+ G C EG++ EA  ++ +M + G +PD+
Sbjct: 232 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 291

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           +  N L++G    GK  +A  L+ +M   GC PNA +Y  ++  +C+  +   A     +
Sbjct: 292 ITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRK 351

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ME    + D V Y+ +I G CK   +D  + + + M                        
Sbjct: 352 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM------------------------ 387

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
                    EM+  G   ++  YN++I   C  G   +   +  +M    ++P   +F V
Sbjct: 388 ---------EMK--GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 436

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++  F+ +G L EA E  KEM+ RG+  AP   T  +L++   +   ++ A  +   +V+
Sbjct: 437 LIDSFVKEGKLREAEELHKEMIHRGI--APDTITYTSLIDGFCKENHLDKANQMVDLMVS 494

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
           KGC+ N+  + I I+       + +       M    V+    T+  L++G  +L    +
Sbjct: 495 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 554

Query: 579 AAEI-TEKVRKMAAERQITFKM 599
           A E+  E V +      +T+K+
Sbjct: 555 AKELFQEMVSRKVPPNIVTYKI 576



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 6/187 (3%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI+   ++ K      L +EM  RK  P ++T   + IL+         +KA+E+ 
Sbjct: 538 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT---YKILLDGLCDNGESEKALEIF 594

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +++ K   E D  ++  ++  +C  S V +A  LF  +  +  KP ++ +  ++ G CK+
Sbjct: 595 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKK 654

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G L EA+ +  +M++ G  PD   YN L+  +   G  T + +L++E++R G   +A++ 
Sbjct: 655 GPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTI 714

Query: 317 TVLIQAL 323
            ++I  L
Sbjct: 715 KMVIDML 721



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 142/316 (44%), Gaps = 6/316 (1%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG   + K  DA +L ++M      P    ++ L  A+ + ++ +       +ME  G
Sbjct: 158 LRSGLVDI-KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKG 216

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++ T + +I+ FC+ RK+   +  +  +I+ G  PN +T+  ++     +  + E +
Sbjct: 217 IAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEAL 276

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           EL+  M ++G  PD+   N ++   C  G+  EA+ + ++M      P   ++  +++  
Sbjct: 277 ELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVM 336

Query: 464 LGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              G    A E  ++M  R + L A +Y     +++ L +   ++ A ++++ +  KG  
Sbjct: 337 CKSGQTALAMELLRKMEERNIKLDAVKYSI---IIDGLCKHGSLDNAFNLFNEMEMKGIT 393

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N+  + I I    + G   +      DM+   + P   TF+ L+    K    + A E+
Sbjct: 394 TNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 453

Query: 583 -TEKVRKMAAERQITF 597
             E + +  A   IT+
Sbjct: 454 HKEMIHRGIAPDTITY 469


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 212/435 (48%), Gaps = 8/435 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  L+ +++KM KF  V +L E M+  +   I+ +++   IL+  F     +  A+ VL 
Sbjct: 67  FNKLLSAIAKMNKFDLVISLGERMQNLR---ISYDLYSYNILINCFCRRSQLPLALAVLG 123

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K G EPD      LL+  C    + EA  L D+M    ++P+   F +L++G     
Sbjct: 124 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHN 183

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  ++ +M   G +PD+  Y  +++G  + G +  A  LLK+M +   + +   YT
Sbjct: 184 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT 243

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I ALC  + + +A   F EM+  G   +VVTY +LI   C   +      +L  MI+R
Sbjct: 244 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 303

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +T+  ++ A  K+ +L E  +L  EM K    PD+  Y+ +I   C    L EA
Sbjct: 304 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 363

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +++  M +    P   ++  ++ GF     + E  E F+EM  RGL+      T   L+
Sbjct: 364 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV--TYNTLI 421

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L +A   +MA+ ++  +V+ G   ++  ++I +  L   G +++A      +  + + 
Sbjct: 422 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 481

Query: 558 PQPDTFAKLMRGLKK 572
           P   T+  ++ G+ K
Sbjct: 482 PDIYTYNIMIEGMCK 496



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 190/380 (50%), Gaps = 8/380 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  ++  L K        +L+++M K K +     ++  ++    + + V  A+ +  EM
Sbjct: 207 YGTVVNGLCKRGDIDLALSLLKKMEKGKIE-ADVVIYTTIIDALCNYKNVNDALNLFTEM 265

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  P+   +  L+  LC      +A++L  +M ER   P++  F++L+  + KEGKL
Sbjct: 266 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 325

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           VEA+ +  +M     +PDI  Y++L++G+    ++ +A  + + M  K C PN  +Y  L
Sbjct: 326 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+  C+ +++EE    F EM + G   + VTY TLI G  ++   D   +I   M+  G+
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY  ++    K  +LE+ + +   ++K    PD+  YN++I   CK G++++  +
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 505

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  +    + P    +  M+ GF  +G   EA   F+EM   G L  P  GT   L+ +
Sbjct: 506 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL--PNSGTYNTLIRA 563

Query: 500 LLR----AQKVEMAKDVWSC 515
            LR    A   E+ K++ SC
Sbjct: 564 RLRDGDKAASAELIKEMRSC 583



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 199/439 (45%), Gaps = 10/439 (2%)

Query: 137 SYDVY--RALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKK 192
           SYD+Y    LI    +  +     A++ +M K   +P ++T      L+  +   + + +
Sbjct: 96  SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS---LLNGYCHGKRISE 152

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+ ++D+M     +P+   F  L+  L  ++   EA  L D M  R  +P L  + +++ 
Sbjct: 153 AVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 212

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G +  A  +L +M+    E D+V+Y  ++        + DA  L  EM  KG  P
Sbjct: 213 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP 272

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  +Y  LI+ LC   +  +A+R   +M       +VVT++ LI  F K  K+    ++ 
Sbjct: 273 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 332

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D MI+R I P+  TY  ++      + L+E   +   M    C P+V  YN +I+  CK 
Sbjct: 333 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 392

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             ++E + ++ EM    L   T ++  ++ G    G    A + FK+MV  G+   P   
Sbjct: 393 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV--PPDII 450

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   LL+ L +  K+E A  V+  +     E ++Y + I I  +   G V++       +
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510

Query: 552 MDADVMPQPDTFAKLMRGL 570
               V P    +  ++ G 
Sbjct: 511 SLKGVKPNVIIYTTMISGF 529



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 186/395 (47%), Gaps = 3/395 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           A+++  EM +    P    F  LL A+ K +       L + M+  R    L  +  L+ 
Sbjct: 48  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 107

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +C+  +L  A  VL +M   G+EPDIV  ++LL+GY    ++++A  L+ +M      P
Sbjct: 108 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 167

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  ++  LI  L    K  EA      M   GC+ D+ TY T+++G CK   ID    +L
Sbjct: 168 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 227

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M +  I  + + Y  I+ A    + + + + L  EM   G  P+V  YN +IR  C  
Sbjct: 228 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 287

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G   +A  + ++M    ++P   +F  ++  F+ +G L+EA + + EM+ R +   P   
Sbjct: 288 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIF 345

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L+N      +++ AK ++  +++K C  NV  +   I        V+E      +M
Sbjct: 346 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 405

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               ++    T+  L++GL +  +  +A +I +K+
Sbjct: 406 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 440



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 141/316 (44%), Gaps = 8/316 (2%)

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL +A  +  +M  +   P IV +N LLS  A+M K      L + M+      +  SY 
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 103

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   CR  ++  A     +M + G E D+VT ++L++G+C  ++I     ++D M   
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 163

Query: 378 GILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              PN +T+   +H +  H K     E V L+  M   GC PD+  Y  V+   CK G++
Sbjct: 164 EYQPNTVTFNTLIHGLFLHNKA---SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 220

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
             A+++  +ME   +      +  ++        + +A   F EM  +G+   P   T  
Sbjct: 221 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI--RPNVVTYN 278

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           +L+  L    +   A  + S ++ +    NV  ++  I +    G + EA     +M+  
Sbjct: 279 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 338

Query: 555 DVMPQPDTFAKLMRGL 570
            + P   T++ L+ G 
Sbjct: 339 SIDPDIFTYSSLINGF 354



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 2/200 (1%)

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L++ V+L GEM +   +P +  +N ++    K+ +    +++   M+   +S    S+ 
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 103

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           ++++ F  +  L  A     +M+  G    P   TL +LLN     +++  A  +   + 
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGY--EPDIVTLSSLLNGYCHGKRISEAVALVDQMF 161

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
               + N   +   IH LF +    EA +    M+     P   T+  ++ GL K  +  
Sbjct: 162 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 221

Query: 578 IAAEITEKVRKMAAERQITF 597
           +A  + +K+ K   E  +  
Sbjct: 222 LALSLLKKMEKGKIEADVVI 241


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 232/518 (44%), Gaps = 21/518 (4%)

Query: 87  RLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIK 146
           R P  E  L  S   L P L +  + R     +     +  A  +P+ V     +  L+ 
Sbjct: 54  RFPAAERLLASSSP-LTPALLQAALRRVRLDPDAALHLFRLAPSRPSLVS----HAQLLH 108

Query: 147 SLSKMRKFGAVWALMEEMRKEK----PQL--------ITTEVFVILMRRFASARMVKKAI 194
            L++ R+F    AL+  +        P L         +   F +L+R  A A  +  A+
Sbjct: 109 ILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSAL 168

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGW 253
            V D M K GC P       LL+ L ++     AA ++ +MR     P       +   +
Sbjct: 169 NVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAY 228

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C++G++ +A   + +M+  G E ++V Y+ ++  Y  MG   DA  +L+ ++RKG  PN 
Sbjct: 229 CRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNV 288

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEILD 372
            +YT+L++  C+  +MEEA R   EM+ +G    D V Y  +I+G+C+  ++D    + +
Sbjct: 289 VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRN 348

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M   GI  N   Y  ++    K   +EE  +++ EM  +G  PD  +YN +I   C+ G
Sbjct: 349 EMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREG 408

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +++A  +   M    L+  T ++  ++ GF     + +A   +  M+ RG+  AP   +
Sbjct: 409 SMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGV--APNEIS 466

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              LL+ L +A K E A ++W   + +G   NV  +   I+ L   G + EA      M 
Sbjct: 467 CSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMK 526

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           +    P   T+  L  G  KL     A  +  K+  + 
Sbjct: 527 ELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 225/499 (45%), Gaps = 12/499 (2%)

Query: 78  FRILKKFHSRLPKLELALQ----HSGVVLRPGL--TERVINRCGDAGNLGYRYYMWASKQ 131
           F +L + H+   +L  AL        V  RP L    R++N+   +G+ G    ++   +
Sbjct: 151 FDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMR 210

Query: 132 PNYVHSYDVYRALI-KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
              V   +   A++ K+  +  +       +EEM     + +    +  +M  +      
Sbjct: 211 IAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLE-VNLVAYHAVMDCYCGMGWT 269

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--FTS 248
           + A  +L+ + + G  P+   +  L+   CK+  ++EA ++  EM+E     +    +  
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGM 329

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G+C+ G++ +A  V  +M+DAG   ++ VYN +++G  ++G+M +  ++L+EM   G
Sbjct: 330 MINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVG 389

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  SY  LI   CR   M +A      M R+G  A  +TY TL+ GFC    ID   
Sbjct: 390 MRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDAL 449

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   M++RG+ PN+++   ++    K  + E+ + L  E    G   +V  +N VI   
Sbjct: 450 RLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGL 509

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK+G + EA  + + M+     P + ++  +  G+   G L  A     +M   G   AP
Sbjct: 510 CKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGF--AP 567

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                 + +     A++     D+ S +  +G   N+  +   I      G++ EAC+  
Sbjct: 568 SVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLY 627

Query: 549 LDMMDADVMPQPDTFAKLM 567
            +M++  + P     + LM
Sbjct: 628 FEMVNNGMNPNVFICSALM 646



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 206/467 (44%), Gaps = 35/467 (7%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARM 189
            PN V     Y  L+K   K  +      +++EM KE   ++  EV + +++  +     
Sbjct: 285 SPNVV----TYTLLVKGYCKDGRMEEAERVVKEM-KETGDIVVDEVAYGMMINGYCQRGR 339

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           +  A  V +EM   G   + FV+  +++ LCK   ++E  K+  EM +   +P    + +
Sbjct: 340 MDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNT 399

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C+EG + +A  +   M   G     + YN LL G+  +  + DA  L   M ++G
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  S + L+  L +  K E+A   + E    G   +V+T+ T+I+G CK  ++    
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAE 519

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+LD M +    P+ LTY  +   + K  +L     LM +M  +G  P V  +N  I   
Sbjct: 520 ELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGH 579

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
               +  +  ++ +EM A  LSP   ++  ++ G+  +G L EAC  + EMV  G+   P
Sbjct: 580 FIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGM--NP 637

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVT----KGCELNV------------------- 525
                 AL++   +  KV+ A  V   +V      GC ++                    
Sbjct: 638 NVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPH 697

Query: 526 ---YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
                W + I  L  +G + +A S    + +   +P   T++ L+ G
Sbjct: 698 SANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHG 744



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 175/382 (45%), Gaps = 28/382 (7%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            YR L     K+ + G    LM +M +      + E+F   +     A+   K  ++  E
Sbjct: 536 TYRTLFDGYCKLGQLGTATHLMNKM-EHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSE 594

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M   G  P+   +G L+   CK  ++ EA  L+ EM      P++   ++L+  + KEGK
Sbjct: 595 MSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654

Query: 259 LVEAKYVLVQMKDAGFEPDI--------------------------VVYNNLLSGYAQMG 292
           + EA  VL ++ +    P                            V++N ++ G  + G
Sbjct: 655 VDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSG 714

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           ++ DA  L + +R K   P+  +Y+ LI        ++EA      M  +G   +++TY 
Sbjct: 715 RIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYN 774

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +LI G CKS K+ R   + + +  +GI PN +TY  ++  + K+ +  E  +L  +M + 
Sbjct: 775 SLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE 834

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G  P V  Y+++I   C  G ++EA+ + ++M   ++ P   ++  ++HG++  G + E 
Sbjct: 835 GIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEI 894

Query: 473 CEYFKEMVGRGLLSAPQYGTLK 494
            + + EM  RGLL     G  K
Sbjct: 895 SKLYDEMHIRGLLPTNWIGNWK 916



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 176/403 (43%), Gaps = 25/403 (6%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
           +VL EM   G  PD++ +  L+D  C+  S+++A ++   M R     +   + +LL G+
Sbjct: 380 KVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGF 439

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C    + +A  +   M   G  P+ +  + LL G  + GK   A  L KE   +G   N 
Sbjct: 440 CSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNV 499

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++  +I  LC++ +M EA      M+   C  D +TY TL  G+CK  ++     +++ 
Sbjct: 500 ITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  P+   +   +  H   ++  +  ++  EM   G  P++  Y  +I   CK G 
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L EA N++ EM    ++P       ++  F  +G + EA    +++V   ++      T+
Sbjct: 620 LHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTI 679

Query: 494 K------------------------ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
           +                         ++  L ++ ++  AK ++  +  K    + + ++
Sbjct: 680 EIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYS 739

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             IH   ++G + EA S    M+ A + P   T+  L+ GL K
Sbjct: 740 SLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCK 782


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 135/546 (24%), Positives = 256/546 (46%), Gaps = 56/546 (10%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNY 134
           EK + I+++  S+           G +       +VI    +A  +   + ++   + N+
Sbjct: 462 EKAYSIIREMMSK-----------GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510

Query: 135 VHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           V   DV  Y  LI S  K+          +EM ++   P ++T   +  L+  +  AR +
Sbjct: 511 VVP-DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVT---YTALIHAYLKARKM 566

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER---------FK- 240
             A E+ + M   GC P+   +  L+D  CK+  +++A +++  MR           FK 
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 241 -------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
                  P++  + +L+ G CK  K+ EA+ +L  M   G EP+ +VY+ L+ G+ ++GK
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A  +  +M  +G  PN  +Y+ LI  L + ++++ A +    M  + C  +V+ YT 
Sbjct: 687 LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I G CK  K D  Y ++  M ++G  PN +TY  ++    K  ++++C+ELM +M   G
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF-----LGQGC 468
           C P+   Y V+I   C  G L +A  + +EM+          +  ++ GF     +  G 
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGL 866

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA----KDVWSCIVTKGCELN 524
           L E  E          ++ P     + L++S  +A ++E+A    K++ SC      + +
Sbjct: 867 LDEIAEN---------VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKD 917

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +Y+  I   SL S   V +A     DM+    +P+   F  L++GL ++   + A ++++
Sbjct: 918 LYSSLIESLSLASK--VDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975

Query: 585 KVRKMA 590
            + +M 
Sbjct: 976 CICQMV 981



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 209/464 (45%), Gaps = 30/464 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     YR L+    + R+ G    ++  M  E     +  +F  L+  +  +    
Sbjct: 332 PNVV----TYRILLCGCLRKRQLGRCKRILSMMITEGCY-PSRRIFNSLIHAYCRSGDYS 386

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE------AAKLFDEMRE-RFKPSLR 244
            A ++L +M   GC+P   V+  L+  +C N  +        A K + EM +     +  
Sbjct: 387 YAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKV 446

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           + ++L    C  GK  +A  ++ +M   GF PD   Y+ ++       K+ +AF L +EM
Sbjct: 447 NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +     P+  +YT+LI + C++  +++A + F EM R GC  +VVTYT LI  + K+RK+
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----- 419
               E+ + M+  G +PN +TY  ++  H K  ++E+  ++   MR    +PDV      
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 420 -----------NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
                       Y  ++   CK  ++KEA ++ + M      P    +  ++ GF   G 
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           L EA   F +M  RG    P   T  +L++ L + +++++A  V S ++   C  NV  +
Sbjct: 687 LDEAQMVFTKMSERGY--GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIY 744

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           T  I  L   G   EA      M +    P   T+  ++ G  K
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 217/491 (44%), Gaps = 46/491 (9%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           LG ++++WA +Q  Y H+  VY AL++ L            + E+R E  +++   + V+
Sbjct: 144 LGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVL 203

Query: 180 ----------------------------------LMRRFASARMVKKAIEVLDEMPKYGC 205
                                             L+R F  A  +  A  V  EM   G 
Sbjct: 204 IRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGF 263

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
             D +  GC +  LCK    +EA  L +  +E FK     +T ++ G C+     EA   
Sbjct: 264 NMDGYTLGCFVHLLCKAGRWREALALIE--KEEFKLDTVIYTQMISGLCEASLFEEAMDF 321

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L +M+ +   P++V Y  LL G  +  ++     +L  M  +GC P+   +  LI A CR
Sbjct: 322 LSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCR 381

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-------SMIQRG 378
                 A +   +M   GC+   V Y  LI G C + K+    ++L+        M+   
Sbjct: 382 SGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPS-LDVLELAEKAYGEMLDAH 440

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++ N++   ++        + E+   ++ EM   G +PD S Y+ VI L C   ++  A 
Sbjct: 441 VVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAF 500

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++ EM++  + P   ++ +++  F   G L +A ++F EMV  G   AP   T  AL++
Sbjct: 501 LLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIH 558

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           + L+A+K+  A +++  ++++GC  NV  +T  I     +G +++AC     M     +P
Sbjct: 559 AYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIP 618

Query: 559 QPDTFAKLMRG 569
             D + K+  G
Sbjct: 619 DVDMYFKIDDG 629


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 191/369 (51%), Gaps = 9/369 (2%)

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAA 229
           L     + +L+R    A  ++ A+++L EM +  G  P   ++   + ALCK+  V EA 
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 230 KLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           ++   M++   KP +  F +L+ G CK G+L EA+ VL +M+ +GF  ++V YN L++G 
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM-ERSGCEAD 347
           +  G+  +A  +++ M      P+  +Y  +I   C+  +++ A     EM +R+GC  D
Sbjct: 135 SSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVELM 406
             TY+ LI+G CKS  + +  E+L  MI R     + + +  ++  + K ++L+   EL+
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELL 251

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M + GC PDV  Y+ +I   C+ G++ +   +  +M +    P   ++ V+V G    
Sbjct: 252 SSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKA 311

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G ++EAC   K M+  G    P   T   + + L +  K++MA D+ + I  KG   +V 
Sbjct: 312 GKMVEACRLVKRMLEDG--CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVV 369

Query: 527 AWTIWIHSL 535
           A+   + S+
Sbjct: 370 AFEALLLSV 378



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 159/342 (46%), Gaps = 41/342 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+++     +  A   L+ EM ++     T  ++   +     +  V +A+EV+  M
Sbjct: 21  YFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNM 80

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
               C+PD   F  L+  LCK   + EA ++ DEM R  F  +L  + +L+ G    G+ 
Sbjct: 81  KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR-RKGCDPNANSYTV 318
            EA  V+  M      PD   YN ++ G+ + G++  A+  L+EM+ R GC P+  +Y++
Sbjct: 141 GEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSI 197

Query: 319 LIQALCRMEKMEEANRAFVEM--------------------------ERS---------- 342
           LI  LC+   + +A+    EM                          +R+          
Sbjct: 198 LINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEH 257

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  DVVTY+T+I G C+   +D+ + +L+ M+ RG  P+ +TY  ++    K  ++ E 
Sbjct: 258 GCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEA 317

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
             L+  M + GC P+   Y++V    CK+ +L  A ++   +
Sbjct: 318 CRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSI 359



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 139/259 (53%), Gaps = 7/259 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  LS   + G    +M+ M         T+ +  ++  F  +  + +A   L+EM
Sbjct: 127 YNTLINGLSSAGRSGEAVLVMQGMTTTPD----TQTYNAIIHGFCKSGEIDRAYGFLEEM 182

Query: 201 -PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCKEG 257
             + GC PD F +  L++ LCK+S++++A +L  EM  R+    S+  F +L+ G+CK  
Sbjct: 183 KQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQ 242

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A+ +L  M + G  PD+V Y+ ++ G  + G +   F LL++M  +GC P+  +YT
Sbjct: 243 DLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYT 302

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VL+  LC+  KM EA R    M   GC  + VTY+ +  G CK  K+D   ++L S+  +
Sbjct: 303 VLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDK 362

Query: 378 GILPNQLTYLHIMLAHEKK 396
           G + + + +  ++L+ +K+
Sbjct: 363 GRITDVVAFEALLLSVKKR 381



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 8/342 (2%)

Query: 249 LLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           L+   C  G+L  A  +L +M +  G  P   +YN  +    + GK+ +A E++K M+  
Sbjct: 24  LVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDG 83

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            C P+  ++  LI  LC+  +++EA +   EMERSG  A++VTY TLI+G   + +    
Sbjct: 84  ACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEA 143

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR-KIGCVPDVSNYNVVIR 426
             ++  M      P+  TY  I+    K  E++     + EM+ + GC PD   Y+++I 
Sbjct: 144 VLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200

Query: 427 LACKLGELKEAVNVWNEMEA-ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             CK   L++A  +  EM           +F  +V G+     L  A E    M+  G  
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG-- 258

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
            AP   T   +++ L R   V+    +   +V++GC+ +V  +T+ +  L   G + EAC
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
                M++    P   T++ +  GL K+    +A ++   +R
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIR 360


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 209/408 (51%), Gaps = 10/408 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++K L   +++G V  LM+EM +    P ++T   F  L+       + ++  EVL 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT---FNTLIGYLCRNGLFERVHEVLA 275

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M ++GC PD  ++  ++D +CK   ++ A ++ + M     KP++  + ++L G C   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA+ +L +M       D V +N L+  + Q G +    ELL++M   GC P+  +YT
Sbjct: 336 RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I   C+   ++EA      M   GC+ + V+YT ++ G C + +     E++  MIQ+
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G+ +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTLKAL 496
           + + N M    +SP T  +  +      +G + +  + F  +    + S A  Y    A+
Sbjct: 516 LELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLY---NAV 572

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           ++SL +  + + A D ++ +V+ GC  N   +T+ I  L S G  KEA
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 195/422 (46%), Gaps = 6/422 (1%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           E++DEM +  C P+   F  L+  LC+N   +   ++  +M E    P +R + +++ G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CKEG L  A  +L +M   G +P++V YN +L G     +  +A ELL EM +K C  + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++ +L+   C+   ++       +M   GC  DV+TYTT+I+GFCK   ID    +L S
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  PN ++Y  ++          +  ELM +M + GC P+   +N +I   CK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +++A+ +  +M     SP   S+  ++ G    G   EA E    MV +G+  +P     
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI--SPNTIIY 534

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++  +L R  +V     ++  I       +   +   I SL        A  +   M+ 
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAK 613
              MP   T+  L++GL    +  +A E  E + ++ +   +   + +  G  +  ++  
Sbjct: 595 NGCMPNESTYTMLIKGLA---SEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENG 651

Query: 614 KQ 615
           KQ
Sbjct: 652 KQ 653



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 163/319 (51%), Gaps = 4/319 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++    +  +++   SA   K+A E+L EM +  C  D+  F  L+D  C+N  V  
Sbjct: 318 KPNVVC---YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
             +L ++M      P +  +T+++ G+CKEG + EA  +L  M   G +P+ V Y  +L 
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G    G+  DA EL+ +M ++GC PN  ++  LI  LC+   +E+A     +M  +GC  
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+++Y+T+I G  K+ K +   E+L+ M+ +GI PN + Y  I  A  ++  + + +++ 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             ++      D   YN VI   CK  E   A++ +  M +    P   ++ +++ G   +
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 467 GCLIEACEYFKEMVGRGLL 485
           G   EA E   E+  RG L
Sbjct: 615 GLAKEAQELLSELCSRGAL 633



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 210/462 (45%), Gaps = 19/462 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  ++++  +   F     ++E M  +   L T    ++L         V +A+ +L +
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL-NAICEQGCVDEAVGLLRK 206

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           +  +GCE D   +  +L  LC      +  +L DEM R    P++  F +L+   C+ G 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL 266

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
                 VL QM + G  PDI +Y  ++ G  + G +  A E+L  M   G  PN   Y  
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +++ LC  E+ +EA     EM +  C  D VT+  L+  FC++  +DR  E+L+ M+  G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            +P+ +TY  ++    K+  ++E V L+  M   GC P+  +Y +V++  C  G   +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + ++M      P   +F  +++    +G + +A E  K+M+  G   +P   +   +++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVID 504

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A K E A ++ + +V KG   N   ++    +L   G V +      ++ D  +  
Sbjct: 505 GLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI-- 562

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
                    R    LYN    A I+   ++   +R I F  Y
Sbjct: 563 ---------RSDAVLYN----AVISSLCKRWETDRAIDFFAY 591



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 192/432 (44%), Gaps = 38/432 (8%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F  ++R   +   +  A+EVLDEM   GC P   ++  +L+A C++   + + ++ + M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +       +   +L   C++G + EA  +L ++   G E DIV YN +L G     +  
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D  EL+ EM R  C PN  ++  LI  LCR    E  +    +M   GC  D+  Y T+I
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEE----------- 401
            G CK   ++   EIL+ M   G+ PN + Y   L  + + E+ +E EE           
Sbjct: 294 DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCP 353

Query: 402 ---------------------CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
                                 +EL+ +M   GC+PDV  Y  VI   CK G + EAV +
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
              M +    P T S+ +++ G    G  ++A E   +M+ +G    P   T   L+N L
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG--CPPNPVTFNTLINFL 471

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +   VE A ++   ++  GC  ++ +++  I  L   G  +EA      M++  + P  
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 561 DTFAKLMRGLKK 572
             ++ +   L +
Sbjct: 532 IIYSSIACALSR 543



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 160/397 (40%), Gaps = 75/397 (18%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+C+ G+L  A+ +   +      P+   +  ++ G    G++ DA E+L EM 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMS 138

Query: 306 RKGCDPNANSYTVLIQALCR----------MEKM-------------------------E 330
            KGC P    Y V+++A CR          +E M                         +
Sbjct: 139 FKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVD 198

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA     ++   GCEAD+V+Y  ++ G C +++     E++D M++    PN +T+  ++
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               +    E   E++ +M + GC PD+  Y  +I   CK G L+ A  + N M +  L 
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 451 PGT-----------------------------------DSFVVMVHGFLGQGCLIEACEY 475
           P                                      +F ++V  F   G +    E 
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            ++M+  G +  P   T   ++N   +   ++ A  +   + + GC+ N  ++TI +  L
Sbjct: 379 LEQMLSHGCM--PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            S G   +A      M+     P P TF  L+  L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 124/326 (38%), Gaps = 78/326 (23%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  ++K L    ++     L+ EM +K+ P  +    F IL+  F    +
Sbjct: 318 KPNVV----CYNTVLKGLCSAERWKEAEELLSEMFQKDCP--LDDVTFNILVDFFCQNGL 371

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V + IE+L++M  +GC PD   +  +++  CK   + EA  L   M     KP+   +T 
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGF---------------------------------- 274
           +L G C  G+ V+A+ ++ QM   G                                   
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 275 -EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--------------------- 312
             PD++ Y+ ++ G  + GK  +A ELL  M  KG  PN                     
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 313 --------------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
                         A  Y  +I +LC+  + + A   F  M  +GC  +  TYT LI G 
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQL 384
                     E+L  +  RG L   L
Sbjct: 612 ASEGLAKEAQELLSELCSRGALRKHL 637


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 235/528 (44%), Gaps = 31/528 (5%)

Query: 68  NEFSHDVEKIFRILKKFHSRLPKLELA--LQHSGVVLRPGLTERVINRCGDAGNLGYRYY 125
           N F   V KI  IL       PK E +  L H    L+P     ++    +  ++  R++
Sbjct: 45  NPFPELVSKISTILSS-----PKWEHSSELCHLSPKLKPHHVVNILQTHKNTDSV-LRFF 98

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGA--------------------VWALMEEMR 165
            W S++  + H    + +++  L + R F                      V   + E+ 
Sbjct: 99  FWISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEIN 158

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
            +     T   F  L+ +     MV  A ++  +M   G  P    F  +++ LCK   V
Sbjct: 159 SKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRV 218

Query: 226 KEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
           +EA  +   + R    P+   +TSL+ G C+   L  A  +  +M   G +P+ V Y+ L
Sbjct: 219 QEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTL 278

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           ++G    G++ +A ++L+EM +KG +P   +YT+ + +LC      EA     +M++ GC
Sbjct: 279 INGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGC 338

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             ++ T+T LISG  +  K +    +   M+  G++P  +TY  ++     +   E    
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFT 398

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +   M   G +P    YN +I+  C +G++++A+ ++++M  A  SP   ++  +++G+ 
Sbjct: 399 IFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYC 458

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            QG L  A    + M G GL   P   T   L++   R  K+E A  ++  ++  G   N
Sbjct: 459 KQGNLNNAMRLLEIMKGNGL--KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +T  I   F+   V +A +    M+++  +P   T+  ++ G  K
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 198/422 (46%), Gaps = 6/422 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L+T   F  ++        V++A  ++  + +Y   P+ F +  L+   C+N ++  
Sbjct: 199 RPSLLT---FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +FD M ++   P+   +++L+ G C EG+L EA  +L +M   G EP +  Y   L 
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
                G  ++A ELL +M+++GC PN  ++T LI  L R  K E A   + +M   G   
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             VTY  LI+  C   + +  + I   M+  G LP+  TY  I+       ++++ + + 
Sbjct: 376 TTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIF 435

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M K G  P+V  YN +I   CK G L  A+ +   M+   L P   ++  ++ GF   
Sbjct: 436 DKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRG 495

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A   F  M+  G+  +P + T  A+++      KV+ A  ++  +V  G   +  
Sbjct: 496 GKLEHATSLFYGMMEHGI--SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            + + I        + EA ++C  M+   ++P   T+   + GL +     +A +I  ++
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 587 RK 588
            K
Sbjct: 614 EK 615



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 192/442 (43%), Gaps = 12/442 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  LI  L    +      ++EEM ++  +  T   + I +     A    
Sbjct: 270 PNSV----TYSTLINGLCSEGRLEEAMDMLEEMVQKGIE-PTVYTYTIPLVSLCDAGCSS 324

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           +A+E+L +M K GC P+   F  L+  L ++   + A  L+ +M  +   P+   + +L+
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
              C EG+   A  +   M   G  P    YN ++  +  MG +  A  +  +M + G  
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  LI   C+   +  A R    M+ +G + D  TYT LISGF +  K++    +
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSL 504

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M++ GI PN +TY  I+  +    ++++ + L  +M + G +P    YNV+I    K
Sbjct: 505 FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
              + EA N   +M    L P   ++   + G    G    A + F EM  R     P  
Sbjct: 565 TNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF--PNL 622

Query: 491 GTLKALLNSLL---RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
            T  +L+  L    RA+  EM  ++ + +   GCE NV  +T  +  L   G   EA   
Sbjct: 623 YTYSSLIYGLCQEGRAEDAEMY-NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQL 681

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
            + M    + P  + +  L+ G
Sbjct: 682 VVSMQKKGLQPSEEIYRALLIG 703



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 190/413 (46%), Gaps = 6/413 (1%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           V +   + ALI  LS+  KF     L  +M  +   + TT  +  L+ +       + A 
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG-LVPTTVTYNALINQLCVEGRFETAF 397

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
            +   M  +G  P    +  ++   C    +++A  +FD+M +    P++  + +L+YG+
Sbjct: 398 TIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGY 457

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CK+G L  A  +L  MK  G +PD   Y  L+SG+++ GK+  A  L   M   G  PN 
Sbjct: 458 CKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNH 517

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +YT +I     + K+++A   F +M  SG      TY  +ISGF K+  I         
Sbjct: 518 VTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGK 577

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+++G+LPN +TY   +    +        ++  EM K    P++  Y+ +I   C+ G 
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGR 637

Query: 434 LKEA--VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            ++A   N+   +      P  D++  +V G  G+G   EA +    M  +GL   P   
Sbjct: 638 AEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGL--QPSEE 695

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +ALL    +  KVE A +++  + T G +L++  +   I +L     ++EA
Sbjct: 696 IYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEA 748



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 197/439 (44%), Gaps = 10/439 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y ALI  L    +F   + + + M      L +T+ +  +++ F     ++KA+ + D+
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHG-SLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M K G  P+   +  L+   CK  ++  A +L + M+    KP    +T L+ G+ + GK
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L  A  +   M + G  P+ V Y  ++ GY  + K+ DA  L  +M   G  P++ +Y V
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNV 557

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I    +   + EA     +M + G   +V+TYT+ I G C++ +    ++I   M +R 
Sbjct: 558 MISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617

Query: 379 ILPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
             PN  TY  ++  L  E + E  E   L+  +   GC P+V  Y  +++  C  G   E
Sbjct: 618 YFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYE 677

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKA 495
           A  +   M+   L P  + +  ++ G      +  A   F  M   G  L    Y   KA
Sbjct: 678 ADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDY---KA 734

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA- 554
           L+ +L +   +E A+ ++  ++ K    +  AWT+ +  L   G   + C   L +M++ 
Sbjct: 735 LICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGET-DLCLKLLHVMESR 793

Query: 555 DVMPQPDTFAKLMRGLKKL 573
           +      T+  L R L  L
Sbjct: 794 NCTLNFQTYVMLARELSAL 812



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 11/313 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN+V     Y A+I     + K     AL  +M  E   L +++ + +++  F+    +
Sbjct: 514 SPNHV----TYTAIIDGYFNLAKVDDALALFWKM-VESGNLPSSQTYNVMISGFSKTNSI 568

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A     +M K G  P+   +   +D LC+N     A K+F EM +R + P+L  ++SL
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSL 628

Query: 250 LYGWCKEGKLVEAKY--VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +YG C+EG+  +A+   +L ++   G EP++  Y  L+ G    G+  +A +L+  M++K
Sbjct: 629 IYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKK 688

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+   Y  L+   C+  K+E A   F  M+  G +  +  Y  LI   CK   I+  
Sbjct: 689 GLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEA 748

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             I  +M+++    +++ +  ++    K+ E + C++L+  M    C     N+   + L
Sbjct: 749 QCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNC---TLNFQTYVML 805

Query: 428 ACKLGELKEAVNV 440
           A +L  L  A+ +
Sbjct: 806 ARELSALDCAIKI 818



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 152/337 (45%), Gaps = 8/337 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI   S+  K     +L   M +    P  +T   +  ++  + +   V  A+ + 
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT---YTAIIDGYFNLAKVDDALALF 540

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            +M + G  P    +  ++    K +S+ EA     +M ++   P++  +TS + G C+ 
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA--FELLKEMRRKGCDPNAN 314
           G+   A  +  +M+   + P++  Y++L+ G  Q G+  DA  + LL  +   GC+PN +
Sbjct: 601 GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT L++ LC   +  EA++  V M++ G +     Y  L+ G CK+ K++    I  SM
Sbjct: 661 TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSM 720

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
              G   +   Y  ++ A  K+  +EE   +   M +     D   + V++    K GE 
Sbjct: 721 DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGET 780

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
              + + + ME+ + +    ++V++        C I+
Sbjct: 781 DLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIK 817


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 209/408 (51%), Gaps = 10/408 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++K L   +++G V  LM+EM +    P ++T   F  L+       + ++  EVL 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT---FNTLIGYLCRNGLFERVHEVLA 275

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M ++GC PD  ++  ++D +CK   ++ A ++ + M     KP++  + ++L G C   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA+ +L +M       D V +N L+  + Q G +    ELL++M   GC P+  +YT
Sbjct: 336 RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I   C+   ++EA      M   GC+ + V+YT ++ G C + +     E++  MIQ+
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G+ +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTLKAL 496
           + + N M    +SP T  +  +      +G + +  + F  +    + S A  Y    A+
Sbjct: 516 LELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLY---NAV 572

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           ++SL +  + + A D ++ +V+ GC  N   +T+ I  L S G  KEA
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 177/377 (46%), Gaps = 3/377 (0%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           E++DEM +  C P+   F  L+  LC+N   +   ++  +M E    P +R + +++ G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CKEG L  A  +L +M   G +P++V YN +L G     +  +A ELL EM +K C  + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++ +L+   C+   ++       +M   GC  DV+TYTT+I+GFCK   ID    +L S
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  PN ++Y  ++          +  ELM +M + GC P+   +N +I   CK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +++A+ +  +M     SP   S+  ++ G    G   EA E    MV +G+  +P     
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI--SPNTIIY 534

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++  +L R  +V     ++  I       +   +   I SL        A  +   M+ 
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594

Query: 554 ADVMPQPDTFAKLMRGL 570
              MP   T+  L++GL
Sbjct: 595 NGCMPNESTYTMLIKGL 611



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 163/319 (51%), Gaps = 4/319 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++    +  +++   SA   K+A E+L EM +  C  D+  F  L+D  C+N  V  
Sbjct: 318 KPNVVC---YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
             +L ++M      P +  +T+++ G+CKEG + EA  +L  M   G +P+ V Y  +L 
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G    G+  DA EL+ +M ++GC PN  ++  LI  LC+   +E+A     +M  +GC  
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+++Y+T+I G  K+ K +   E+L+ M+ +GI PN + Y  I  A  ++  + + +++ 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             ++      D   YN VI   CK  E   A++ +  M +    P   ++ +++ G   +
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 467 GCLIEACEYFKEMVGRGLL 485
           G   EA E   E+  RG L
Sbjct: 615 GLAKEAQELLSELCSRGAL 633



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 211/462 (45%), Gaps = 19/462 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  ++++  +   F     ++E M  +   L T    ++L         V +A+ +L +
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL-NAICEQGCVDEAVGLLRK 206

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           +  +GCE D   +  +L  LC      +  +L DEM R    P++  F +L+   C+ G 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL 266

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
                 VL QM + G  PDI +Y  ++ G  + G +  A E+L  M   G  PN   Y  
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +++ LC  E+ +EA     EM +  C  D VT+  L+  FC++  +DR  E+L+ M+  G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            +P+ +TY  ++    K+  ++E V L+  M   GC P+  +Y +V++  C  G   +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + ++M      P   +F  +++    +G + +A E  K+M+  G   +P   +   +++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVID 504

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A K E A ++ + +V KG   N   ++    +L   G V +     + M D     
Sbjct: 505 GLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKV----IQMFD----- 555

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
             +     +R    LYN    A I+   ++   +R I F  Y
Sbjct: 556 --NIKDTTIRSDAVLYN----AVISSLCKRWETDRAIDFFAY 591



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 192/432 (44%), Gaps = 38/432 (8%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F  ++R   +   +  A+EVLDEM   GC P   ++  +L+A C++   + + ++ + M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +       +   +L   C++G + EA  +L ++   G E DIV YN +L G     +  
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D  EL+ EM R  C PN  ++  LI  LCR    E  +    +M   GC  D+  Y T+I
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEE----------- 401
            G CK   ++   EIL+ M   G+ PN + Y   L  + + E+ +E EE           
Sbjct: 294 DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCP 353

Query: 402 ---------------------CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
                                 +EL+ +M   GC+PDV  Y  VI   CK G + EAV +
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
              M +    P T S+ +++ G    G  ++A E   +M+ +G    P   T   L+N L
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG--CPPNPVTFNTLINFL 471

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +   VE A ++   ++  GC  ++ +++  I  L   G  +EA      M++  + P  
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 561 DTFAKLMRGLKK 572
             ++ +   L +
Sbjct: 532 IIYSSIACALSR 543



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 160/397 (40%), Gaps = 75/397 (18%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+C+ G+L  A+ +   +      P+   +  ++ G    G++ DA E+L EM 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMS 138

Query: 306 RKGCDPNANSYTVLIQALCR----------MEKM-------------------------E 330
            KGC P    Y V+++A CR          +E M                         +
Sbjct: 139 FKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVD 198

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA     ++   GCEAD+V+Y  ++ G C +++     E++D M++    PN +T+  ++
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               +    E   E++ +M + GC PD+  Y  +I   CK G L+ A  + N M +  L 
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 451 PGT-----------------------------------DSFVVMVHGFLGQGCLIEACEY 475
           P                                      +F ++V  F   G +    E 
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            ++M+  G +  P   T   ++N   +   ++ A  +   + + GC+ N  ++TI +  L
Sbjct: 379 LEQMLSHGCM--PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            S G   +A      M+     P P TF  L+  L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 124/326 (38%), Gaps = 78/326 (23%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  ++K L    ++     L+ EM +K+ P  +    F IL+  F    +
Sbjct: 318 KPNVV----CYNTVLKGLCSAERWKEAEELLSEMFQKDCP--LDDVTFNILVDFFCQNGL 371

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V + IE+L++M  +GC PD   +  +++  CK   + EA  L   M     KP+   +T 
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGF---------------------------------- 274
           +L G C  G+ V+A+ ++ QM   G                                   
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 275 -EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--------------------- 312
             PD++ Y+ ++ G  + GK  +A ELL  M  KG  PN                     
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 313 --------------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
                         A  Y  +I +LC+  + + A   F  M  +GC  +  TYT LI G 
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQL 384
                     E+L  +  RG L   L
Sbjct: 612 ASEGLAKEAQELLSELCSRGALRKHL 637


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 209/408 (51%), Gaps = 10/408 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++K L   +++G V  LM+EM +    P ++T   F  L+       + ++  EVL 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT---FNTLIGYLCRNGLFERVHEVLA 275

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M ++GC PD  ++  ++D +CK   ++ A ++ + M     KP++  + ++L G C   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA+ +L +M       D V +N L+  + Q G +    ELL++M   GC P+  +YT
Sbjct: 336 RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I   C+   ++EA      M   GC+ + V+YT ++ G C + +     E++  MIQ+
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +T+  ++    KK  +E+ +EL+ +M   GC PD+ +Y+ VI    K G+ +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQYGTLKAL 496
           + + N M    +SP T  +  +      +G + +  + F  +    + S A  Y    A+
Sbjct: 516 LELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLY---NAV 572

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           ++SL +  + + A D ++ +V+ GC  N   +T+ I  L S G  KEA
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 177/377 (46%), Gaps = 3/377 (0%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW 253
           E++DEM +  C P+   F  L+  LC+N   +   ++  +M E    P +R + +++ G 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CKEG L  A  +L +M   G +P++V YN +L G     +  +A ELL EM +K C  + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            ++ +L+   C+   ++       +M   GC  DV+TYTT+I+GFCK   ID    +L S
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M   G  PN ++Y  ++          +  ELM +M + GC P+   +N +I   CK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +++A+ +  +M     SP   S+  ++ G    G   EA E    MV +G+  +P     
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGI--SPNTIIY 534

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++  +L R  +V     ++  I       +   +   I SL        A  +   M+ 
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594

Query: 554 ADVMPQPDTFAKLMRGL 570
              MP   T+  L++GL
Sbjct: 595 NGCMPNESTYTMLIKGL 611



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 163/319 (51%), Gaps = 4/319 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++    +  +++   SA   K+A E+L EM +  C  D+  F  L+D  C+N  V  
Sbjct: 318 KPNVVC---YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
             +L ++M      P +  +T+++ G+CKEG + EA  +L  M   G +P+ V Y  +L 
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G    G+  DA EL+ +M ++GC PN  ++  LI  LC+   +E+A     +M  +GC  
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+++Y+T+I G  K+ K +   E+L+ M+ +GI PN + Y  I  A  ++  + + +++ 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             ++      D   YN VI   CK  E   A++ +  M +    P   ++ +++ G   +
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 467 GCLIEACEYFKEMVGRGLL 485
           G   EA E   E+  RG L
Sbjct: 615 GLAKEAQELLSELCSRGAL 633



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 211/462 (45%), Gaps = 19/462 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  ++++  +   F     ++E M  +   L T    ++L         V +A+ +L +
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL-NAICEQGCVDEAVGLLRK 206

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           +  +GCE D   +  +L  LC      +  +L DEM R    P++  F +L+   C+ G 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL 266

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
                 VL QM + G  PDI +Y  ++ G  + G +  A E+L  M   G  PN   Y  
Sbjct: 267 FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +++ LC  E+ +EA     EM +  C  D VT+  L+  FC++  +DR  E+L+ M+  G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            +P+ +TY  ++    K+  ++E V L+  M   GC P+  +Y +V++  C  G   +A 
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + ++M      P   +F  +++    +G + +A E  K+M+  G   +P   +   +++
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVID 504

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A K E A ++ + +V KG   N   ++    +L   G V +     + M D     
Sbjct: 505 GLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKV----IQMFD----- 555

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
             +     +R    LYN    A I+   ++   +R I F  Y
Sbjct: 556 --NIKDTTIRSDAVLYN----AVISSLCKRWETDRAIDFFAY 591



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 192/432 (44%), Gaps = 38/432 (8%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F  ++R   +   +  A+EVLDEM   GC P   ++  +L+A C++   + + ++ + M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +       +   +L   C++G + EA  +L ++   G E DIV YN +L G     +  
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D  EL+ EM R  C PN  ++  LI  LCR    E  +    +M   GC  D+  Y T+I
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEE----------- 401
            G CK   ++   EIL+ M   G+ PN + Y   L  + + E+ +E EE           
Sbjct: 294 DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCP 353

Query: 402 ---------------------CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
                                 +EL+ +M   GC+PDV  Y  VI   CK G + EAV +
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
              M +    P T S+ +++ G    G  ++A E   +M+ +G    P   T   L+N L
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG--CPPNPVTFNTLINFL 471

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +   VE A ++   ++  GC  ++ +++  I  L   G  +EA      M++  + P  
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 561 DTFAKLMRGLKK 572
             ++ +   L +
Sbjct: 532 IIYSSIACALSR 543



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 160/397 (40%), Gaps = 75/397 (18%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + +++ G+C+ G+L  A+ +   +      P+   +  ++ G    G++ DA E+L EM 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMS 138

Query: 306 RKGCDPNANSYTVLIQALCR----------MEKM-------------------------E 330
            KGC P    Y V+++A CR          +E M                         +
Sbjct: 139 FKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVD 198

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA     ++   GCEAD+V+Y  ++ G C +++     E++D M++    PN +T+  ++
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               +    E   E++ +M + GC PD+  Y  +I   CK G L+ A  + N M +  L 
Sbjct: 259 GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLK 318

Query: 451 PGT-----------------------------------DSFVVMVHGFLGQGCLIEACEY 475
           P                                      +F ++V  F   G +    E 
Sbjct: 319 PNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIEL 378

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            ++M+  G +  P   T   ++N   +   ++ A  +   + + GC+ N  ++TI +  L
Sbjct: 379 LEQMLSHGCM--PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            S G   +A      M+     P P TF  L+  L K
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 124/326 (38%), Gaps = 78/326 (23%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARM 189
           +PN V     Y  ++K L    ++     L+ EM +K+ P  +    F IL+  F    +
Sbjct: 318 KPNVV----CYNTVLKGLCSAERWKEAEELLSEMFQKDCP--LDDVTFNILVDFFCQNGL 371

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           V + IE+L++M  +GC PD   +  +++  CK   + EA  L   M     KP+   +T 
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGF---------------------------------- 274
           +L G C  G+ V+A+ ++ QM   G                                   
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 275 -EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--------------------- 312
             PD++ Y+ ++ G  + GK  +A ELL  M  KG  PN                     
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 313 --------------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
                         A  Y  +I +LC+  + + A   F  M  +GC  +  TYT LI G 
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQL 384
                     E+L  +  RG L   L
Sbjct: 612 ASEGLAKEAQELLSELCSRGALRKHL 637


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 204/446 (45%), Gaps = 38/446 (8%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  L+   +   M    ++    M   G +P+  ++  +++ALCK+ +V +A  +  ++ 
Sbjct: 353 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 412

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E    P    +TS++ G C++  L  A  V  QM   G EP+ V Y+ L++G    G++ 
Sbjct: 413 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 472

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +AF+L++EM   G  P A++ T  I ALC M   E+A R FV+M+  GCE +V TYT LI
Sbjct: 473 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 532

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMG----- 407
           SG C S  +     +   M + G+ PN +TY   ++I++ + + +     + LMG     
Sbjct: 533 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLF 592

Query: 408 -------EMRKIGCV--------------------PDVSNYNVVIRLACKLGELKEAVNV 440
                  EM K  C+                     ++  YN +I+  C  G    A+ +
Sbjct: 593 TNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRI 652

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            + M      P   S+  ++ GF     +  A   F EMV  GL   P   T  AL++  
Sbjct: 653 LDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL--CPNEVTYTALIDGY 710

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            + +K++ A  +   +   GC  NV  + + IH L    +   A   C  M++  + P  
Sbjct: 711 CKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV 770

Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKV 586
            T+  ++ GL K  +  +A E+  K+
Sbjct: 771 VTYTAMIDGLCKNGSTSLALEMFNKM 796



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 201/436 (46%), Gaps = 44/436 (10%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
             Y  +IK    +        +M  M  R     L+T   +  +++ +  +     A+ +L
Sbjct: 597  TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT---YNTIIKGYCDSGNTTSALRIL 653

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            D M   GC+PDE+ +  L+   CK S ++ A  LF+EM  +   P+   +T+L+ G+CK+
Sbjct: 654  DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKD 713

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             KL  A  +L  MK +G  P++  YN L+ G  +    + A EL K M  +G  PN  +Y
Sbjct: 714  EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 773

Query: 317  TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            T +I  LC+      A   F +M   GC  +++TY++LI    +  K++    +   + +
Sbjct: 774  TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER 833

Query: 377  RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI----------- 425
             G++P+++TY+ ++ A+    ++E     +G M K GC P +  Y V+I           
Sbjct: 834  HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD 893

Query: 426  -RLA--------CKLGELKEAVNVWNEMEA--ASLSPGTDSFV--VMVHGFLGQGCLIEA 472
             RLA        C  G      +  + M A  A L PG    V   +V      G   EA
Sbjct: 894  QRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEA 953

Query: 473  CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
             E    M+ +GL   P      +LL SLLR + V++A  V+  + T+GCE+++       
Sbjct: 954  NELLGSMISQGL--CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHL------- 1004

Query: 533  HSLFSNGHVKEACSYC 548
                 NG+ +  C+ C
Sbjct: 1005 -----NGYKELICALC 1015



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 175/379 (46%), Gaps = 9/379 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ALI  L           L   M ++   P  +T   +  L+      R +K A  VL
Sbjct: 527 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT---YNALINILVENRRIKYAFVVL 583

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           + M + G   +   +  ++   C     K+A  + + M +R    +L  + +++ G+C  
Sbjct: 584 NLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDS 643

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G    A  +L  M+D G +PD   Y  L+ G+ ++ KM  AF L  EM   G  PN  +Y
Sbjct: 644 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 703

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI   C+ EK++ A      M+RSGC  +V TY  LI G  K        E+   MI+
Sbjct: 704 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 763

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI PN +TY  ++    K       +E+  +M + GC+P++  Y+ +IR   + G+++E
Sbjct: 764 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 823

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTL-K 494
           A N++ E+E   L P   ++V M+  ++  G +  A  +   M+  G       YG L K
Sbjct: 824 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 883

Query: 495 ALLNS-LLRAQKVEMAKDV 512
            L N  LL  Q++    DV
Sbjct: 884 GLKNEYLLADQRLAALPDV 902



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 212/503 (42%), Gaps = 55/503 (10%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           R G+T  V++R        Y   +    QPN +    +Y A+I +L K         +M+
Sbjct: 362 RLGMTAAVMDR--------YHRMLSEGVQPNLL----IYNAVINALCKDGNVADAETIMK 409

Query: 163 EMRKEKPQLITTEVFVILMRRFASARM--VKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           ++ + +   ++ + F          R   +  A++V ++M K GCEP+   +  L++ LC
Sbjct: 410 KVFESE---MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 466

Query: 221 KNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
            +  V EA  L  EM      P+    T  +   C  G   +A  + V MK+ G EP++ 
Sbjct: 467 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 526

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL---------------- 323
            Y  L+SG    G +  A  L   M R G  PN  +Y  LI  L                
Sbjct: 527 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 586

Query: 324 -------------------CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
                              C +   ++A      M + G  A++VTY T+I G+C S   
Sbjct: 587 GRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 646

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
                ILD M   G  P++ +Y  ++    K  ++E    L  EM   G  P+   Y  +
Sbjct: 647 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTAL 706

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK  +L  A ++   M+ +   P   ++ V++HG   Q     A E  K M+  G+
Sbjct: 707 IDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 766

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T  A+++ L +     +A ++++ ++ +GC  N+  ++  I +L   G V+EA
Sbjct: 767 F--PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 824

Query: 545 CSYCLDMMDADVMPQPDTFAKLM 567
            +   ++    ++P   T+ K++
Sbjct: 825 ENLFAELERHGLIPDEITYVKMI 847



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 153/363 (42%), Gaps = 34/363 (9%)

Query: 132  PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
            PN V     Y ALI    K  K     +L+E M++   +P +   + + +L+        
Sbjct: 698  PNEV----TYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV---QTYNVLIHGLTKQNN 750

Query: 190  VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
               A E+   M + G  P+   +  ++D LCKN S   A ++F++M E+   P+L  ++S
Sbjct: 751  FSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSS 810

Query: 249  LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
            L+    +EGK+ EA+ +  +++  G  PD + Y  ++  Y   GK+  AF  L  M + G
Sbjct: 811  LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 870

Query: 309  CDPNANSYTVLIQAL--------------------CRMEKMEEANRAFVEMERSGCEAD- 347
            C P   +Y VLI+ L                    C          A   M     E D 
Sbjct: 871  CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 930

Query: 348  ---VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
               V     L+S    + +     E+L SMI +G+ P+Q  Y  ++ +  +   ++  + 
Sbjct: 931  GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMG 990

Query: 405  LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
            +   M   GC   ++ Y  +I   C+L   KEA   +  M   + +P      V++ G L
Sbjct: 991  VFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLL 1050

Query: 465  GQG 467
              G
Sbjct: 1051 RDG 1053



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 2/322 (0%)

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L  +  +G    +  Y+ LL   +++G      +    M  +G  PN   Y  +I ALC+
Sbjct: 338 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 397

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
              + +A     ++  S    D  TYT++I G C+   +D   ++ + M + G  PN +T
Sbjct: 398 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 457

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++        + E  +L+ EM   G +P        I   C +G  ++A  ++ +M+
Sbjct: 458 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 517

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
                P   ++  ++ G    G L  A   F  M   G+   P   T  AL+N L+  ++
Sbjct: 518 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRR 575

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++ A  V + +   G   N+  +   I      G  K+A     +M+         T+  
Sbjct: 576 IKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 635

Query: 566 LMRGLKKLYNRQIAAEITEKVR 587
           +++G     N   A  I + +R
Sbjct: 636 IIKGYCDSGNTTSALRILDLMR 657



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 2/251 (0%)

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           M      L  + + G      +Y+ L+  L R+         +  M   G + +++ Y  
Sbjct: 331 MARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNA 390

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I+  CK   +     I+  + +  + P+  TY  ++L H +K +L+  +++  +M K G
Sbjct: 391 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 450

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C P+   Y+ +I   C  G + EA ++  EM    + P   +    +      GC  +A 
Sbjct: 451 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 510

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             F +M  +G    P   T  AL++ L  +  +++A  ++  +   G   N   +   I+
Sbjct: 511 RLFVDMKNKG--CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 568

Query: 534 SLFSNGHVKEA 544
            L  N  +K A
Sbjct: 569 ILVENRRIKYA 579



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 121/286 (42%), Gaps = 32/286 (11%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
             Y +LI++L +  K      L  E+  E+  LI  E+ +V ++  +  +  V+ A   L 
Sbjct: 807  TYSSLIRALGQEGKVEEAENLFAEL--ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 864

Query: 199  EMPKYGCEPDEFVFGCLLDALCKN------------------------SSVKEAAKLFDE 234
             M K GC+P  + +G L+  L KN                        ++ ++A  +   
Sbjct: 865  RMIKAGCQPTLWTYGVLIKGL-KNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSA 923

Query: 235  MRERFKP--SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
                  P  S++   +L+      G+  EA  +L  M   G  PD   YN+LL    ++ 
Sbjct: 924  KLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVR 983

Query: 293  KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
             +  A  + K M  +GC+ + N Y  LI ALC++ + +EA   F  M       D V   
Sbjct: 984  NVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQA 1043

Query: 353  TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
             LI G  +    D C E L  M  R  +P+   +++ +LA E  ++
Sbjct: 1044 VLIDGLLRDGYKDLCMEFLHIMETRRYMPS--FHIYTILAREASKK 1087



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 40/256 (15%)

Query: 359 CKSRK-IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           C S++ + R    LD + Q G+      Y  +++   +       ++    M   G  P+
Sbjct: 325 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 384

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN VI   CK G + +A  +  ++  + +SP T ++  M+ G   +  L  A + F 
Sbjct: 385 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 444

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA---------------------------- 509
           +M   G    P   T   L+N L  + +V  A                            
Sbjct: 445 QMAKEG--CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 502

Query: 510 ----KDVWSCIV---TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
               +D W   V    KGCE NVY +T  I  L  +G +K A      M    V P   T
Sbjct: 503 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 562

Query: 563 FAKLMRGLKKLYNRQI 578
           +  L+  L +  NR+I
Sbjct: 563 YNALINILVE--NRRI 576


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 178/360 (49%), Gaps = 4/360 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV-KEAAKLFDEM 235
           +  L+  F+ A   + A+ V   M   G +P    +  +  A  K S   KE   L D M
Sbjct: 187 YTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSM 246

Query: 236 RERFKPSLRHFTSLLYGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +E      R+  + L   C+  G   EA  V  +MK AGFEPD V +N+LL  Y +  K 
Sbjct: 247 KEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKH 306

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A  +LK M   GC P+  +Y  LI A  +   +EEA     EME  G + DVVTYTTL
Sbjct: 307 EEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTL 366

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ISG  +  KID        M++ G  PN  TY  ++  H  + +  E + +  ++R  G 
Sbjct: 367 ISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGY 426

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           VPDV  +N ++ +  + G   E   V+ EM+ A   P  D++V ++  +   G   +A E
Sbjct: 427 VPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME 486

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            +K M+  G+   P   T  A+L++L R  + E A+ +++ +V + C+ +  +++  +H+
Sbjct: 487 IYKRMIEAGIY--PDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHA 544



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSL 249
           ++A +V DEM   G EPD+  F  LLD   K    +EA  +   M      PS+  + SL
Sbjct: 272 REAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSL 331

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + K+G L EA  +  +M+  G +PD+V Y  L+SG  ++GK+  A     EM R GC
Sbjct: 332 ISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGC 391

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y  LI+      K  E    F ++  +G   DVVT+ TL+S F ++        
Sbjct: 392 SPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSG 451

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M + G +P + TY+ ++ ++ +    ++ +E+   M + G  PD+S YN V+    
Sbjct: 452 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA 511

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           + G  ++A  ++ EM      P   S+  ++H +
Sbjct: 512 RGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAY 545



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 173/393 (44%), Gaps = 51/393 (12%)

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           GCL +A    S++ EAA           P    +T+L+  + + G+  +A  V  +M D 
Sbjct: 167 GCLAEA----SAILEAAP---------APDASAYTALVSAFSRAGRFRDAVAVFQRMVDG 213

Query: 273 GFEPDIVVYNNLLSGYAQM------------------------------------GKMTD 296
           G +P +V YN +   Y++M                                    G   +
Sbjct: 214 GVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHRE 273

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A ++  EM+  G +P+  ++  L+    +  K EEA      ME +GC   VVTY +LIS
Sbjct: 274 AAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLIS 333

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
            + K   ++   E+   M  RG+ P+ +TY  ++   ++  +++  +    EM + GC P
Sbjct: 334 AYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSP 393

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           ++  YN +I+L    G+  E + V++++ +A   P   ++  ++  F   G   E    F
Sbjct: 394 NLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVF 453

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           KEM   G +  P+  T  +L++S  R    + A +++  ++  G   ++  +   + +L 
Sbjct: 454 KEMKKAGYI--PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA 511

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             G  ++A     +M+D D  P   +++ L+  
Sbjct: 512 RGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHA 544



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 193/450 (42%), Gaps = 43/450 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +LI +  K         L +EM  R  KP ++T    +  + R      +  A+   
Sbjct: 327 TYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGK---IDAALATY 383

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM + GC P+   +  L+          E   +FD++R   + P +  + +LL  + + 
Sbjct: 384 SEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQN 443

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G   E   V  +MK AG+ P+   Y +L+S Y++ G    A E+ K M   G  P+ ++Y
Sbjct: 444 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTY 503

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             ++ AL R  + E+A + F EM    C+ D ++Y++L+  +  ++K+D+   + + +  
Sbjct: 504 NAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYA 563

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV------------------ 418
             I  +      ++L + K   L E  +   E+R+  C  D+                  
Sbjct: 564 ERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKK 623

Query: 419 -----------------SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                            + YN ++ +  +LG+ ++  ++  E++++ + P   S+  +++
Sbjct: 624 VEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIY 683

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            +  +G + EA   F EM   G+   P   T    + S +     E A D+   +VT+GC
Sbjct: 684 AYGRKGQMKEASRLFSEMKCSGV--KPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGC 741

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
             N   +   +     +G + EA S+  ++
Sbjct: 742 RPNERTFNSILQGYSRHGRMVEAKSFLSNL 771



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 20/346 (5%)

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           + + G L EA  +L    +A   PD   Y  L+S +++ G+  DA  + + M   G  P 
Sbjct: 163 FARAGCLAEASAIL----EAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPA 218

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVE-MERSGCEADVVTYTTLISGFCKSRKIDR-CYEI 370
             +Y V+  A  +M    +   A V+ M+  G E D  TY TLIS  C+ R + R   ++
Sbjct: 219 LVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLIS-CCRRRGLHREAAQV 277

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            D M   G  P+++T+  ++  + K  + EE + ++  M   GC P V  YN +I    K
Sbjct: 278 FDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVK 337

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G L+EA+ +  EME   + P   ++  ++ G    G +  A   + EMV  G   +P  
Sbjct: 338 DGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGC--SPNL 395

Query: 491 GTLKALLN-SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
            T  AL+    +R +  EM   V+  + + G   +V  W   +     NG   E      
Sbjct: 396 CTYNALIKLHGVRGKFTEMMA-VFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFK 454

Query: 550 DMMDADVMPQPDTFAKLMRGLKK---------LYNRQIAAEITEKV 586
           +M  A  +P+ DT+  L+    +         +Y R I A I   +
Sbjct: 455 EMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDI 500



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 134/323 (41%), Gaps = 45/323 (13%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASA 187
           K+  Y+   D Y +LI S S+   F     + + M +    P + T   +  ++   A  
Sbjct: 457 KKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDIST---YNAVLSALARG 513

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC--------------------------- 220
              ++A ++  EM    C+PDE  +  LL A                             
Sbjct: 514 GRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLV 573

Query: 221 --------KNSSVKEAAKLFDEMRER---FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
                   K +++ E  K F E+R R      ++ +    +YG  K  K VE   VL  M
Sbjct: 574 KTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEE--VLSLM 631

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
            +         YN+L+  Y+++G       +L E++  G  P+  SY  +I A  R  +M
Sbjct: 632 MENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQM 691

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           +EA+R F EM+ SG + D+VTY   I  +  +   +   +++  ++ +G  PN+ T+  I
Sbjct: 692 KEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSI 751

Query: 390 MLAHEKKEELEECVELMGEMRKI 412
           +  + +   + E    +  + KI
Sbjct: 752 LQGYSRHGRMVEAKSFLSNLPKI 774


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 206/465 (44%), Gaps = 46/465 (9%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           AL+ S  ++R      AL+   R  +P  +   + +  +   A A        VL EM K
Sbjct: 78  ALLYSHCRLRLLRPAIALL---RSSRPTTVAYNILLAALSDHAHAP------AVLAEMCK 128

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
            G   D      LL  LC+N  V  AA L D         +  + +L+ G+C+ G    A
Sbjct: 129 RGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAA 188

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             V  +M   G   D+V YN L++G+ + G++  A  +L  M+  G DPN  +YT  I  
Sbjct: 189 LSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVY 248

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            CR + +EEA   +  M R+G   DVVT + L++G C+  +    Y +   M + G +PN
Sbjct: 249 YCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPN 308

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV------------------------ 418
            +TY  ++ +  K    +E + L+GEM   G V D+                        
Sbjct: 309 HVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLR 368

Query: 419 -----------SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
                        Y V+I   CK   + EA  V  EME  S+SP   +F  +++GF+ +G
Sbjct: 369 FALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG 428

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            L +A EY + M  RG+   P   T   L++   + Q  + A +V+  ++ +G E+N + 
Sbjct: 429 LLDKATEYKRMMKERGI--NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFI 486

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
               ++ L  NG ++EA +   D   + +      +  L+ GL K
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFK 531



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 179/387 (46%), Gaps = 17/387 (4%)

Query: 199 EMP---KYGCE-------PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           +MP   K+G E       PD  V+   ++ LC     KEA  +  EMR    KP    + 
Sbjct: 534 DMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYN 593

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   C++G+  +A  +L +MK +  +P+++ YN L++G    G +  A  LL EM   
Sbjct: 594 TMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA 653

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P++ ++  ++QA  +  +++        M  +G  AD+  Y TL+   C      + 
Sbjct: 654 GFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKA 713

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L+ M+  GI P+ +T+  ++L H K   L+       +M      P+++ +N ++  
Sbjct: 714 TVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGG 773

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
              +G + EA  V  EME + L P   ++ ++V G   Q   +EA   + EMVG+G +  
Sbjct: 774 LESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFV-- 831

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH--SLFSNGHVKEAC 545
           P+  T  AL++   +A  +  AK+++  +  +G       + I +   S   NG   + C
Sbjct: 832 PKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKC 891

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
               DM +    P   T + + R   K
Sbjct: 892 --LKDMKEKGFSPSKGTLSFICRAFSK 916



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 211/462 (45%), Gaps = 10/462 (2%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           S  PN V    V    +K    + K      +M+E R   P ++T   +  L+  F   +
Sbjct: 409 SISPNVVTFSSVINGFVKR-GLLDKATEYKRMMKE-RGINPNVVT---YGTLIDGFFKFQ 463

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--F 246
               A+EV  +M   G E ++F+   L++ L +N  ++EA  LF +       SL H  +
Sbjct: 464 GQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGS-GLSLDHVNY 522

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T+L+ G  K G +  A     ++ D    PD VVYN  ++    +GK  +A  +L EMR 
Sbjct: 523 TTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRN 582

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P+ ++Y  +I + CR  +  +A +   EM+ S  + +++TY TL++G   +  +++
Sbjct: 583 MGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEK 642

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +L+ M+  G  P+ LT+  ++ A  +   L+  +++   M   G   D++ YN +++
Sbjct: 643 AKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + C  G  ++A  V  EM  + ++P T +F  ++ G      L  A   + +M+ + +  
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNI-- 760

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +P   T   LL  L    ++  A  V   +   G E N   + I +       +  EA  
Sbjct: 761 SPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMR 820

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              +M+    +P+  T+  L+    K      A E+ + ++K
Sbjct: 821 LYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQK 862



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/468 (21%), Positives = 200/468 (42%), Gaps = 49/468 (10%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           AL+  L +  +F   +AL  EM K    P  +T   +  L+   A A   K+ + +L EM
Sbjct: 279 ALVAGLCRDGRFSEAYALFREMDKVGAVPNHVT---YCTLIDSLAKAGRGKELLSLLGEM 335

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR----HFTSLLYGWCKE 256
              G   D   +  L+D L K     E     D +R     +L      +T L+   CK 
Sbjct: 336 VSRGVVMDLVTYTALMDWLGKQGKTDEVK---DTLRFALSDNLSLNGVTYTVLIDALCKA 392

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             + EA+ VL++M++    P++V ++++++G+ + G +  A E  + M+ +G +PN  +Y
Sbjct: 393 HNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTY 452

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI    + +  + A   + +M   G E +     +L++G  ++ KI+    +      
Sbjct: 453 GTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASG 512

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+  + + Y  ++    K  ++    +   E+     +PD   YNV I   C LG+ KE
Sbjct: 513 SGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKE 572

Query: 437 -----------------------------------AVNVWNEMEAASLSPGTDSFVVMVH 461
                                              A+ + +EM+ +S+ P   ++  +V 
Sbjct: 573 AKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVA 632

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G  G G + +A     EMV  G   +P   T + +L +  +++++++  D+   ++  G 
Sbjct: 633 GLFGTGAVEKAKYLLNEMVSAGF--SPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGL 690

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             ++  +   +  L  +G  ++A     +M+ + + P   TF  L+ G
Sbjct: 691 HADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILG 738



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 148/358 (41%), Gaps = 43/358 (12%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY   I  L  + KF    +++ EMR    KP   T    ++   R        KA+++L
Sbjct: 556 VYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGE---TAKALKLL 612

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS-LRH---------- 245
            EM     +P+   +  L+  L    +V++A  L +EM    F PS L H          
Sbjct: 613 HEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 246 ------------------------FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
                                   + +LL   C  G   +A  VL +M  +G  PD + +
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L+ G+ +   + +AF    +M  +   PN  ++  L+  L  + ++ EA    +EME+
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEK 792

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SG E + +TY  L++G  K         +   M+ +G +P   TY  ++    K   + +
Sbjct: 793 SGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQ 852

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP--GTDSFV 457
             EL  +M+K G  P    Y++++    ++    E      +M+    SP  GT SF+
Sbjct: 853 AKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFI 910



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 1/249 (0%)

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSL 243
           + +R +   +++ + M   G   D  V+  LL  LC +   ++A  + +EM      P  
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDT 729

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F +L+ G CK   L  A     QM      P+I  +N LL G   +G++ +A  +L E
Sbjct: 730 ITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIE 789

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M + G +PN  +Y +L+    +     EA R + EM   G    V TY  LIS F K+  
Sbjct: 790 MEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGM 849

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           + +  E+   M +RG+ P   TY  ++    +     E  + + +M++ G  P     + 
Sbjct: 850 MTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSF 909

Query: 424 VIRLACKLG 432
           + R   K G
Sbjct: 910 ICRAFSKPG 918



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 6/204 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI    K       +A   +M  +   P + T   F  L+    S   + +A  VL 
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIAT---FNTLLGGLESVGRIGEAGTVLI 788

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM K G EP+   +  L+    K S+  EA +L+ EM  + F P +  + +L+  + K G
Sbjct: 789 EMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAG 848

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +AK +   M+  G  P    Y+ L+SG++++   T+  + LK+M+ KG  P+  + +
Sbjct: 849 MMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLS 908

Query: 318 VLIQALCRMEKMEEANRAFVEMER 341
            + +A  +     +A R    + R
Sbjct: 909 FICRAFSKPGMTWQAQRLLKNLYR 932


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 219/476 (46%), Gaps = 20/476 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMR-------KFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
            PN +      RA      K+R       +F   +AL  EM   +P L +   F  L+  
Sbjct: 22  NPNLLGGGAAARAFSDYREKLRTGFLHSIRFEDAFALFFEMVHSQP-LPSIVDFTRLLTA 80

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
            A+ R  +  I    +M  YG   D + F  L+   C+ S +  A  +  +M +  ++PS
Sbjct: 81  TANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPS 140

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  F SLL+G+C   ++ +A  +++ M  +G+EP++VVYN L+ G  + G++  A ELL 
Sbjct: 141 IVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLN 200

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM +KG   +  +Y  L+  LC   +  +A R   +M +     DVVT+T LI  F K  
Sbjct: 201 EMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQG 260

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHI---MLAHEKKEELEECVELMGEMRKIGCVPDVS 419
            +D   E+   MIQ  + PN +TY  I   +  H +  + ++  +LM      GC P+V 
Sbjct: 261 NLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASK---GCFPNVV 317

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN +I   CK   + E + ++  M     +    ++  ++HG+   G L  A + F  M
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V R +   P   T   LL+ L    ++E A   +  +      + + A+ I IH L    
Sbjct: 378 VSRRV--TPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKAD 435

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V++A      +    V P   T+  ++ GL K   R+ A E+   +R+M  E  I
Sbjct: 436 KVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADEL---IRRMKEEGII 488



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 198/431 (45%), Gaps = 8/431 (1%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
            +  ++  ++KM KF  V  L  +M       I+ ++  F IL+  F     +  A+ +L 
Sbjct: 607  FTRVLTVIAKMNKFDIVIYLYHKMENLG---ISHDLYSFTILIHCFCRCSRLSLALALLG 663

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            +M K G  P     G LL+  C+ +  +EA  L D M    F P++  + +++ G CK  
Sbjct: 664  KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             L  A  V   M+  G   D V YN L+SG +  G+ TDA  LL++M ++  DPN   +T
Sbjct: 724  DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783

Query: 318  VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             LI    +   + EA   + EM R     +V TY +LI+GFC    +     + D M+ +
Sbjct: 784  ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 843

Query: 378  GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            G  P+ +TY  ++    K + +E+ ++L  EM   G V D   YN +I   C+ G+L  A
Sbjct: 844  GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA 903

Query: 438  VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              V+N M    +SP   ++ +++      G  IE      E + +  +      T   ++
Sbjct: 904  QKVFNRMVDCGVSPDIVTYNILLDCLCNNG-KIEKALVMVEDLQKSEMDVDII-TYNIII 961

Query: 498  NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
              L R  K++ A  ++  +  KG + +  A+   I  L   G  +EA   C  M +   M
Sbjct: 962  QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFM 1021

Query: 558  PQPDTFAKLMR 568
            P    + + +R
Sbjct: 1022 PSERIYDETLR 1032



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 192/431 (44%), Gaps = 4/431 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR  +++     KF   ++L  EM + +P + +   F  ++   A        I +  +M
Sbjct: 572 YRERLRNELHCIKFDDAFSLFCEMLQSRP-IPSIVDFTRVLTVIAKMNKFDIVIYLYHKM 630

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G   D + F  L+   C+ S +  A  L  +M +  F+PS+    SLL G+C+  + 
Sbjct: 631 ENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRF 690

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  ++  M   GF P++V+YN +++G  +   + +A E+   M +KG   +A +Y  L
Sbjct: 691 QEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTL 750

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L    +  +A R   +M +   + +V+ +T LI  F K   +     +   MI+R +
Sbjct: 751 ISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSV 810

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +PN  TY  ++        L +   +   M   GC PDV  YN +I   CK   +++ + 
Sbjct: 811 VPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMK 870

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ EM    L     ++  ++HG+   G L  A + F  MV  G+  +P   T   LL+ 
Sbjct: 871 LFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV--SPDIVTYNILLDC 928

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L    K+E A  +   +     ++++  + I I  L     +KEA      +    V P 
Sbjct: 929 LCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPD 988

Query: 560 PDTFAKLMRGL 570
              +  ++ GL
Sbjct: 989 AIAYITMISGL 999



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 127/266 (47%), Gaps = 10/266 (3%)

Query: 131  QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
             PN +     + ALI +  K         L +EM  R   P + T   +  L+  F    
Sbjct: 776  DPNVI----FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFT---YNSLINGFCIHG 828

Query: 189  MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFT 247
             +  A  + D M   GC PD   +  L+   CK+  V++  KLF EM  +        + 
Sbjct: 829  CLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYN 888

Query: 248  SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            +L++G+C+ GKL  A+ V  +M D G  PDIV YN LL      GK+  A  +++++++ 
Sbjct: 889  TLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS 948

Query: 308  GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              D +  +Y ++IQ LCR +K++EA   F  + R G + D + Y T+ISG C+       
Sbjct: 949  EMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREA 1008

Query: 368  YEILDSMIQRGILPNQLTYLHIMLAH 393
             ++   M + G +P++  Y   +  H
Sbjct: 1009 DKLCRRMKEDGFMPSERIYDETLRDH 1034



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 141/320 (44%), Gaps = 11/320 (3%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P IV +  +L+  A+M K      L  +M   G   +  S+T+LI   CR  ++  A   
Sbjct: 602 PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 661

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             +M + G    +VT  +L++GFC+  +      ++DSM   G +PN + Y  ++    K
Sbjct: 662 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 721

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +L   +E+   M K G   D   YN +I      G   +A  +  +M    + P    
Sbjct: 722 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 781

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           F  ++  F+ +G L+EA   +KEM+ R ++  P   T  +L+N       +  AK ++  
Sbjct: 782 FTALIDTFVKEGNLLEARNLYKEMIRRSVV--PNVFTYNSLINGFCIHGCLGDAKYMFDL 839

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL----- 570
           +V+KGC  +V  +   I     +  V++      +M    ++    T+  L+ G      
Sbjct: 840 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 899

Query: 571 ----KKLYNRQIAAEITEKV 586
               +K++NR +   ++  +
Sbjct: 900 LNVAQKVFNRMVDCGVSPDI 919



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 188/461 (40%), Gaps = 57/461 (12%)

Query: 161 MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
            ++MR E  + I    + I++     A  V+KA E+   +P  G +PD   +  ++  LC
Sbjct: 409 FDDMR-ESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLC 467

Query: 221 KN---------------------------------SSVKEAAKLFDEMRERFKPS---LR 244
           KN                                 SS KE +    E+ ER K +   ++
Sbjct: 468 KNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKEISLSLREIWERSKSNPFWMQ 527

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV------------YNNLLSGYAQMG 292
               + +    +G  V   Y+L++    G  P+  +            Y   L       
Sbjct: 528 RLIPIAFSSSVKG-FVRRHYLLLE---RGNNPETSLSRSFSGASHHHHYRERLRNELHCI 583

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K  DAF L  EM +    P+   +T ++  + +M K +     + +ME  G   D+ ++T
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 643

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            LI  FC+  ++     +L  M++ G  P+ +T   ++    +    +E V L+  M   
Sbjct: 644 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 703

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G VP+V  YN VI   CK  +L  A+ V+  ME   +     ++  ++ G    G   +A
Sbjct: 704 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 763

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
               ++MV R +   P      AL+++ ++   +  A++++  ++ +    NV+ +   I
Sbjct: 764 ARLLRDMVKRKI--DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLI 821

Query: 533 HSLFSNGHVKEACSYCLDMM-DADVMPQPDTFAKLMRGLKK 572
           +    +G + +A  Y  D+M      P   T+  L+ G  K
Sbjct: 822 NGFCIHGCLGDA-KYMFDLMVSKGCFPDVVTYNTLITGFCK 861


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 220/468 (47%), Gaps = 47/468 (10%)

Query: 84  FHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRA 143
           F  R+P  +L   +    L P ++  V+ +  +  ++G+R++ ++  + N  HS+  Y  
Sbjct: 49  FVYRVPDSDLCFCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNL 108

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L +SL K         + E M+ +      + +   L+  FA    +  A  +L  +  Y
Sbjct: 109 LTRSLCKAGMHDLAGQMFECMKSDGIS-PNSRLLGFLVSSFAEKGKLHCATALL--LQSY 165

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK----------------------- 240
             E    V   LL+ L K   V++A KLF+E   RF+                       
Sbjct: 166 EVEGCCMVVNSLLNTLVKLDRVEDAMKLFEE-HLRFQSCNDTKTFNILIRGLCGVGKAEK 224

Query: 241 --------------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLL 285
                         P +  + +L+ G+CK  +L +A  +   +K + G  PD+V Y +++
Sbjct: 225 AVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMI 284

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           SGY + GKM +A  LL +M R G  P   ++ VL+    +  +M  A     +M   GC 
Sbjct: 285 SGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCF 344

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            DVVT+T+LI G+C+  ++++ + + + M  RG+ PN  TY  ++ A  K+  L +  EL
Sbjct: 345 PDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKAREL 404

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           +G++     +P    YN VI   CK G++ EA+ +  EME     P   +F +++ G   
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCM 464

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
           +G + EA   F +MV  G   +P   T+ +LL+ LL+A    MAK+ +
Sbjct: 465 KGRMFEAVSIFHKMVAIG--CSPDKITVSSLLSCLLKAG---MAKEAY 507



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 197/442 (44%), Gaps = 59/442 (13%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEF------------VFGCLLDALCKNSSVKEA 228
           +  F S  +VKK    LD  P  G    EF             +  L  +LCK      A
Sbjct: 67  LNPFISFEVVKK----LDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLA 122

Query: 229 AKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++F+ M+ +   P+ R    L+  + ++GKL  A  +L+Q  +   E   +V N+LL+ 
Sbjct: 123 GQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEV--EGCCMVVNSLLNT 180

Query: 288 YAQMGKMTDAFELLKE-MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
             ++ ++ DA +L +E +R + C+ +  ++ +LI+ LC + K E+A      M   GC  
Sbjct: 181 LVKLDRVEDAMKLFEEHLRFQSCN-DTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLP 239

Query: 347 DVVTYTTLISGFCKSRKIDRCYE------------------------------------I 370
           D+VTY TLI GFCKS ++ +  E                                    +
Sbjct: 240 DIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVL 299

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M++ GI P  +T+  ++  + K  E+    E+ G+M   GC PDV  +  +I   C+
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCR 359

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G++ +   +W EM A  + P   ++ ++++    +  L++A E   ++  + ++  PQ 
Sbjct: 360 VGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDII--PQP 417

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                +++   +A KV  A  +   +  K C+ +   +TI I      G + EA S    
Sbjct: 418 FMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHK 477

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M+     P   T + L+  L K
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLK 499



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 7/239 (2%)

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY  L    CK+   D   ++ + M   GI PN      ++ +  +K +L     L+ + 
Sbjct: 105 TYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQS 164

Query: 410 RKI-GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
            ++ GC   V   N ++    KL  +++A+ ++ E         T +F +++ G  G G 
Sbjct: 165 YEVEGCCMVV---NSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGK 221

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI-VTKGCELNVYA 527
             +A E    M G G L  P   T   L+    ++ +++ A +++  +  + GC  +V  
Sbjct: 222 AEKAVELLGGMSGFGCL--PDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVT 279

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           +T  I      G ++EA     DM+   + P   TF  L+ G  K      A EI  K+
Sbjct: 280 YTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKM 338


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 206/435 (47%), Gaps = 11/435 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK----PQLITTEVFVILMRRFASARMVKKAIE 195
            Y  L+ S  K  +   V  L++EM        P  +T  V +  + R      +++A E
Sbjct: 239 TYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGD---LEEAAE 295

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
           +++ M +   +   F +  L+  L     VK+A  L  EM  E   P++  + ++++G  
Sbjct: 296 MVEGM-RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLL 354

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           + G++  A+   V+M+  G +PD++ YN+LL+GY + G + +A  L  ++R  G  P   
Sbjct: 355 QSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVL 414

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y +LI   CR+  +EEA R   EM   GC  DV TYT L+ G   +  +    E  D M
Sbjct: 415 TYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEM 474

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           + +G+ P+   Y   + A      + +   L   M   G   D   YN++I   CK G L
Sbjct: 475 LSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNL 534

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            +A ++  +M    L P   ++  ++H    +G L EA ++FK+M+  GL  AP   T  
Sbjct: 535 NDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGL--APSAVTYT 592

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
             +++  R   +  A   +  ++ +G E N   + + IH+L   G  + A  +  +M++ 
Sbjct: 593 VFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLER 652

Query: 555 DVMPQPDTFAKLMRG 569
            ++P   T+  L+ G
Sbjct: 653 GLVPNKYTYTLLIDG 667



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 165/361 (45%), Gaps = 8/361 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y A+I  L +  +  A      EMR    +P +IT   +  L+  +  A  +K+A+ + 
Sbjct: 345 TYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVIT---YNSLLNGYCKAGSLKEALLLF 401

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            ++   G  P    +  L+D  C+   ++EA +L +EM E+   P +  +T L+ G    
Sbjct: 402 GDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNA 461

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             L  A+    +M   G +PD   YN  +     +G +  AF L + M  +G   +  +Y
Sbjct: 462 CSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTY 521

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +LI  LC+   + +A    ++M  +G + D +TYT LI   C+   +    +    MI 
Sbjct: 522 NILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMIS 581

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ P+ +TY   + A+ ++  L        +M + G  P+   YNV+I   C+ G  + 
Sbjct: 582 DGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQL 641

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A   ++EM    L P   ++ +++ G   +G   +A  ++ EM   G+   P Y T KAL
Sbjct: 642 AYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGI--HPDYLTHKAL 699

Query: 497 L 497
            
Sbjct: 700 F 700



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 168/354 (47%), Gaps = 7/354 (1%)

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM--RRKGCDPNANSYTVLIQA 322
           V  +M   G EP IV YN LL  + + G+      LLKEM  R  GC PN  ++ V+I  
Sbjct: 224 VHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITG 283

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           L R   +EEA    VE  R   +A   TY  LI+G      + +  ++   M   GI+P 
Sbjct: 284 LARKGDLEEAAE-MVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPT 342

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++    +  ++E       EMR +G  PDV  YN ++   CK G LKEA+ ++ 
Sbjct: 343 VVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFG 402

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           ++  A L+P   ++ +++ G+   G L EA    +EMV +G L  P   T   L+     
Sbjct: 403 DLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCL--PDVCTYTILMKGSHN 460

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           A  + MA++ +  +++KG + + +A+   I +  + G + +A      MM   +     T
Sbjct: 461 ACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVT 520

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFK-MYKRRGERDLKEKAKK 614
           +  L+ GL K  N   A ++  K+     +   IT+  +     ER L  +A+K
Sbjct: 521 YNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARK 574



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 6/290 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI    ++        L EEM ++   P + T   + ILM+   +A  +  A E  
Sbjct: 415 TYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCT---YTILMKGSHNACSLAMAREFF 471

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
           DEM   G +PD F +   + A     ++ +A +L + M  E        +  L+ G CK 
Sbjct: 472 DEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKT 531

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G L +AK + ++M   G +PD + Y  L+  + + G + +A +  K+M   G  P+A +Y
Sbjct: 532 GNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTY 591

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           TV I A CR   +  A   F +M   G E + +TY  LI   C++ +    Y     M++
Sbjct: 592 TVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLE 651

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
           RG++PN+ TY  ++  + K+   E+ +    EM + G  PD   +  + +
Sbjct: 652 RGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFK 701



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 1/186 (0%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T  + IL+        +  A ++  +M   G +PD   + CL+ A C+   ++EA K F 
Sbjct: 518 TVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFK 577

Query: 234 EM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           +M  +   PS   +T  ++ +C+ G L  A     +M + G EP+ + YN L+    + G
Sbjct: 578 DMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTG 637

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +   A+    EM  +G  PN  +YT+LI   C+    E+A R + EM ++G   D +T+ 
Sbjct: 638 RTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHK 697

Query: 353 TLISGF 358
            L  GF
Sbjct: 698 ALFKGF 703



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 121/271 (44%), Gaps = 5/271 (1%)

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             EM   G  P+      +++ L    + ++      EM + G E  +VTY TL+  F K
Sbjct: 190 FHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLK 249

Query: 361 SRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
             + D+   +L  M  R  G LPN +T+  ++    +K +LEE  E++  MR +      
Sbjct: 250 EGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMR-LSKKASS 308

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I      G +K+A ++  EME   + P   ++  M+HG L  G +  A   F E
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVE 368

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M   GL   P   T  +LLN   +A  ++ A  ++  +   G    V  + I I      
Sbjct: 369 MRAMGL--QPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRL 426

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           G ++EA     +M++   +P   T+  LM+G
Sbjct: 427 GDLEEARRLKEEMVEQGCLPDVCTYTILMKG 457



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 9/256 (3%)

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
           AF EM   G   DV     ++     + + D    +   M+Q GI P+ +TY  ++ +  
Sbjct: 189 AFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFL 248

Query: 395 KKEELEECVELMGEM--RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           K+   ++   L+ EM  R  GC+P+   +NVVI    + G+L+EA  +   +E   LS  
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEM---VEGMRLSKK 305

Query: 453 TDSFVV--MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
             SF    ++ G L +G + +A +   EM   G++  P   T  A+++ LL++ +VE A+
Sbjct: 306 ASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIM--PTVVTYNAMIHGLLQSGQVEAAQ 363

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +  +   G + +V  +   ++     G +KEA     D+  A + P   T+  L+ G 
Sbjct: 364 VKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGY 423

Query: 571 KKLYNRQIAAEITEKV 586
            +L + + A  + E++
Sbjct: 424 CRLGDLEEARRLKEEM 439



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 9/173 (5%)

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
           C+    EM   G  PDV + N V+R+        +   V  EM    + P   ++  ++ 
Sbjct: 186 CLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLD 245

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            FL +G   +     KEM  RG    P   T   ++  L R   +E A +     + +G 
Sbjct: 246 SFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAE-----MVEGM 300

Query: 522 EL----NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            L    + + +   I  L + G VK+A    L+M +  +MP   T+  ++ GL
Sbjct: 301 RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGL 353



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 5/205 (2%)

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
           C      M   G+ P+      ++         ++   +  EM ++G  P +  YN ++ 
Sbjct: 186 CLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLD 245

Query: 427 LACKLGELKEAVNVWNEME--AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
              K G   +   +  EME   +   P   +  V++ G   +G L EA E  +   G  L
Sbjct: 246 SFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVE---GMRL 302

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                  T   L+  LL    V+ A D+   +  +G    V  +   IH L  +G V+ A
Sbjct: 303 SKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAA 362

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRG 569
               ++M    + P   T+  L+ G
Sbjct: 363 QVKFVEMRAMGLQPDVITYNSLLNG 387


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 221/507 (43%), Gaps = 39/507 (7%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K+  + H+   YR++I+ L    KF A+  ++ +MR+     +   V+V  M+ +     
Sbjct: 32  KEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGK 91

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V++A+ V + M  Y CEP  F +  ++  L  +    +A K++  MR+R   P +  FT 
Sbjct: 92  VQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR--- 305
            +  +CK  +   A  +L  M   G E ++V Y  ++ G+ +     + +EL  +M    
Sbjct: 152 RMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211

Query: 306 --------------------------------RKGCDPNANSYTVLIQALCRMEKMEEAN 333
                                           ++G  PN  +Y + IQ LC+  +++ A 
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R    +   G + DV+TY  LI G CK+ K       L  M+  G+ P+  TY  ++  +
Sbjct: 272 RMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K   ++    ++G+    G VPD   Y  +I   C  GE   A+ ++NE     + P  
Sbjct: 332 CKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
             +  ++ G   QG ++EA +   EM  +GL+  P+  T   L+N L +   V  A  + 
Sbjct: 392 ILYNTLIKGLSNQGMILEAAQLANEMSEKGLI--PEVQTFNILVNGLCKMGCVSDADGLV 449

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             +++KG   +++ + I IH   +   ++ A      M+D  V P   T+  L+ GL K 
Sbjct: 450 KVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 509

Query: 574 YNRQIAAEITEK-VRKMAAERQITFKM 599
              +   E  +  V K  A    TF +
Sbjct: 510 SKFEDVMETYKTMVEKGCAPNLFTFNI 536



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 202/437 (46%), Gaps = 6/437 (1%)

Query: 139 DVYRALI--KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           DVY   I  KS  K  +  A   L+  M  +  ++     +  ++  F       +  E+
Sbjct: 145 DVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEM-NVVAYCTVVGGFYEENFKAEGYEL 203

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
             +M   G       F  LL  LCK   VKE  KL D++ +R   P+L  +   + G C+
Sbjct: 204 FGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQ 263

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G+L  A  ++  + + G +PD++ YNNL+ G  +  K  +A   L +M  +G +P++ +
Sbjct: 264 RGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYT 323

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI   C+   ++ A R   +   +G   D  TY +LI G C   + +R   + +  +
Sbjct: 324 YNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEAL 383

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +GI PN + Y  ++     +  + E  +L  EM + G +P+V  +N+++   CK+G + 
Sbjct: 384 GKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVS 443

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  +   M +    P   +F +++HG+  Q  +  A E    M+  G+   P   T  +
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGV--DPDVYTYNS 501

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LLN L +  K E   + +  +V KGC  N++ + I + SL     + EA     +M +  
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS 561

Query: 556 VMPQPDTFAKLMRGLKK 572
           V P   TF  L+ G  K
Sbjct: 562 VNPDAVTFGTLIDGFCK 578



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 198/417 (47%), Gaps = 11/417 (2%)

Query: 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           V  L+E+    KP +IT   +  L+         ++A   L +M   G EPD + +  L+
Sbjct: 274 VGCLIEQ--GPKPDVIT---YNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLI 328

Query: 217 DALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
              CK   V+ A ++  D +   F P    + SL+ G C EG+   A  +  +    G +
Sbjct: 329 AGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIK 388

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P++++YN L+ G +  G + +A +L  EM  KG  P   ++ +L+  LC+M  + +A+  
Sbjct: 389 PNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
              M   G   D+ T+  LI G+    K++   EILD M+  G+ P+  TY  ++    K
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCK 508

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             + E+ +E    M + GC P++  +N+++   C+  +L EA+ +  EM+  S++P   +
Sbjct: 509 TSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVT 568

Query: 456 FVVMVHGFLGQGCLIEACEYFKEM--VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
           F  ++ GF   G L  A   F++M    +   S P Y     ++++      V MA+ ++
Sbjct: 569 FGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY---NIIIHAFTEKLNVTMAEKLF 625

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +V +    + Y + + +      G+V     + L+MM+   +P   T  +++  L
Sbjct: 626 QEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 7/284 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+  L KM        L++ M  +   P + T   F IL+  +++   ++ A+E+LD
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFT---FNILIHGYSTQLKMENALEILD 485

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
            M   G +PD + +  LL+ LCK S  ++  + +  M E+   P+L  F  LL   C+  
Sbjct: 486 VMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSY 316
           KL EA  +L +MK+    PD V +  L+ G+ + G +  A+ L ++M        +  +Y
Sbjct: 546 KLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY 605

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            ++I A      +  A + F EM       D  TY  ++ GFCK+  ++  Y+ L  M++
Sbjct: 606 NIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME 665

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
            G +P+  T   ++     ++ + E   ++  M + G VP+  N
Sbjct: 666 NGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVN 709


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/531 (25%), Positives = 244/531 (45%), Gaps = 30/531 (5%)

Query: 63  THGSHNEFSHDVEKIFRILKKFHSRL---PKLELALQHSGVVLRPGLTERVINRCGDAGN 119
           T    + +S D ++ + I K  H+ L   P LE       + L P    RV+    +   
Sbjct: 68  TKSGTSTYSEDFDRDW-IRKVVHNDLWDDPGLEKLFD---LTLAPIWVPRVLVELKEDPK 123

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ------LIT 173
           L ++++ W+  +  + HS + Y  +   L   R +    ++++EM   K        L +
Sbjct: 124 LAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWS 183

Query: 174 TE--------VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           T         VF  L        M+++AI+   +M ++   P       LL    K    
Sbjct: 184 TRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKT 243

Query: 226 KEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            +  + F +M     +P++  +  ++   CKEG +  A+ +  +MK  G  PD V YN++
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G+ ++G++ D     +EM+   C+P+  +Y  LI   C+  K+      + EM+ +G 
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           + +VV+Y+TL+  FCK   + +  +    M + G++PN+ TY  ++ A+ K   L +   
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR 423

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  EM ++G   +V  Y  +I   C    +KEA  ++ +M+ A + P   S+  ++HGF+
Sbjct: 424 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFV 483

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQ---YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               +  A E   E+ GRG+   P    YGT    L SL   +K+E AK V + +   G 
Sbjct: 484 KAKNMDRALELLNELKGRGI--KPDLLLYGTFIWGLCSL---EKIEAAKVVMNEMKECGI 538

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + N   +T  + + F +G+  E      +M + D+     TF  L+ GL K
Sbjct: 539 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 195/405 (48%), Gaps = 3/405 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  +I  + K     A   L EEM K +  +  T  +  ++  F     +   +   +EM
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM 323

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
               CEPD   +  L++  CK   +    + + EM+    KP++  +++L+  +CKEG +
Sbjct: 324 KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 383

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A    V M+  G  P+   Y +L+    ++G ++DAF L  EM + G + N  +YT L
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC  E+M+EA   F +M+ +G   ++ +Y  LI GF K++ +DR  E+L+ +  RGI
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 503

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ L Y   +      E++E    +M EM++ G   +   Y  ++    K G   E ++
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLH 563

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + +EM+   +     +F V++ G      + +A +YF  +     L A       A+++ 
Sbjct: 564 LLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQA-NAAIFTAMIDG 622

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L +  +VE A  ++  +V KG   +  A+T  +   F  G+V EA
Sbjct: 623 LCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 191/423 (45%), Gaps = 9/423 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I    K+ +        EEM+    +P +IT    +    +F    +    +E   
Sbjct: 300 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI---GLEFYR 356

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM   G +P+   +  L+DA CK   +++A K + +MR     P+   +TSL+   CK G
Sbjct: 357 EMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIG 416

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A  +  +M   G E ++V Y  L+ G     +M +A EL  +M   G  PN  SY 
Sbjct: 417 NLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYN 476

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    + + M+ A     E++  G + D++ Y T I G C   KI+    +++ M + 
Sbjct: 477 ALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKEC 536

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N L Y  +M A+ K     E + L+ EM+++     V  + V+I   CK   + +A
Sbjct: 537 GIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKA 596

Query: 438 VNVWNEMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           V+ +N +     L      F  M+ G      +  A   F++MV +GL+  P      +L
Sbjct: 597 VDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV--PDRTAYTSL 654

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++   +   V  A  +   +   G +L++ A+T  +  L     +++A S+  +M+   +
Sbjct: 655 MDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGI 714

Query: 557 MPQ 559
            P 
Sbjct: 715 HPD 717



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 166/355 (46%), Gaps = 3/355 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +  K+      + L  EM +   +      +  L+     A  +K+A E+  +M
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEW-NVVTYTALIDGLCDAERMKEAEELFGKM 463

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  P+   +  L+    K  ++  A +L +E++ R  KP L  + + ++G C   K+
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKI 523

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             AK V+ +MK+ G + + ++Y  L+  Y + G  T+   LL EM+    +    ++ VL
Sbjct: 524 EAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVL 583

Query: 320 IQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           I  LC+ + + +A   F  +    G +A+   +T +I G CK  +++    + + M+Q+G
Sbjct: 584 IDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKG 643

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++P++  Y  +M  + K+  + E + L  +M +IG   D+  Y  ++       +L++A 
Sbjct: 644 LVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKAR 703

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +   EM    + P     + ++      GC+ EA E    ++   LL++     L
Sbjct: 704 SFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSDNDNAL 758



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 2/312 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P   V++ L S    +G + +A +   +M+R    P   S   L+    ++ K ++  R 
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F +M  +G    V TY  +I   CK   ++    + + M  RG++P+ +TY  ++    K
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              L++ V    EM+ + C PDV  YN +I   CK G+L   +  + EM+   L P   S
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +V  F  +G + +A +++ +M   GL+  P   T  +L+++  +   +  A  + + 
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLV--PNEYTYTSLIDANCKIGNLSDAFRLGNE 427

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           ++  G E NV  +T  I  L     +KEA      M  A V+P   ++  L+ G  K  N
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487

Query: 576 RQIAAEITEKVR 587
              A E+  +++
Sbjct: 488 MDRALELLNELK 499


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 237/496 (47%), Gaps = 48/496 (9%)

Query: 120 LGYRYYMWASKQPN---YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
           +G  ++ WASKQ N   Y++ +    +L++ L++ R F  V +L++ M K K  + T E 
Sbjct: 46  MGLEFFHWASKQSNCGNYLNEFSC-SSLLRLLARRRLFSEVESLLKIM-KSKDLMPTREA 103

Query: 177 FVILMRRFASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           F +++  FA   +V +A+E      K + C PD F    LL+ L K+  V+ A K++DEM
Sbjct: 104 FSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEM 163

Query: 236 RERFKPSLRHFTS--LLYGWCKEGKLVEAKYVLVQMK-DAGFEPDIVVYNNLLSGYAQMG 292
            +R    + ++T   ++ G CKEGK VE  + L++ +   G  P+IV YN L+ GY + G
Sbjct: 164 VDR-NGEVDNYTVCIMVKGLCKEGK-VEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKG 221

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME------------ 340
               A  L KE++ KG  P   +Y  +I   C+  K E  ++  VEM             
Sbjct: 222 DTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYN 281

Query: 341 -----------------------RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
                                  +SGC+ D+ TY  LI+G C   ++ +  ++L+  I+R
Sbjct: 282 NIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKR 341

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LPN+++Y  ++  + K+ E    ++L+ +M + G  PD+  Y  +I      GE+  A
Sbjct: 342 GLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVA 401

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + V N+M    + P  + + V++ G   +G L  A     EM+ + +  AP       L+
Sbjct: 402 LTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNV--APDAFITATLV 459

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +  +R    E AK ++   + KG +  V  +   I      G +K+A      M+     
Sbjct: 460 DGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHS 519

Query: 558 PQPDTFAKLMRGLKKL 573
           P   T++ ++ G  K+
Sbjct: 520 PDEFTYSTIIDGYIKM 535



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/530 (23%), Positives = 230/530 (43%), Gaps = 58/530 (10%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV-ILMRRFASAR 188
           K   ++ +   Y A+I    K  KF  V  L+ EM  E+   ++  ++  I+  +F    
Sbjct: 234 KMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEM-SERGLDVSIHIYNNIIDAQFKHGC 292

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            ++ A + +  M K GC+PD   +  L+   C    V +A +L ++  +R   P+   +T
Sbjct: 293 RIEAA-DTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYT 351

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L++ +CK+G+ + A  +L++M + G +PD+V Y  L+ G    G++  A  +  +M  K
Sbjct: 352 PLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEK 411

Query: 308 GCDPNANSYTVLIQALCRMEKM-----------------------------------EEA 332
           G  P+AN Y VL+  LC+  ++                                   EEA
Sbjct: 412 GVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEA 471

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            + F      G +  VV Y  +I G+CK   +         MIQ    P++ TY  I+  
Sbjct: 472 KKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDG 531

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           + K  +L   + + G M K  C P+V  Y ++I   C  G++  A   + +M +  L P 
Sbjct: 532 YIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPN 591

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL----------R 502
             ++ +++  F     L +AC +F++M+    L  P   T   L+N L           R
Sbjct: 592 VVTYTILIGCFCKGVNLTKACSFFEQMLMEKCL--PNDVTYNYLMNGLTNNVDFVISNQR 649

Query: 503 AQKVE--MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
           +++ E  +  + +  +++ G +    ++   +  L  +  VK A      MM    +P P
Sbjct: 650 SEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDP 709

Query: 561 DTFAKLMRGL-----KKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGE 605
            +   L+ GL      + +N  I+ ++ E+  ++A +       +  +G+
Sbjct: 710 VSLVALLHGLCLEGRSQDWNNVISCKLNERELQVAVKYSEKLDAFLSQGQ 759



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 213/486 (43%), Gaps = 41/486 (8%)

Query: 139 DVY--RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           DV+   +L+  L K  K      + +EM     ++    V  I+++       V+   ++
Sbjct: 136 DVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTV-CIMVKGLCKEGKVEDGWKL 194

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           +++    GC P+   +  L+D  CK    + A  LF E++ + F P+++ + +++ G+CK
Sbjct: 195 IEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCK 254

Query: 256 EGKLVEAKYVLVQMKD-----------------------------------AGFEPDIVV 280
           +GK      +LV+M +                                   +G +PD+  
Sbjct: 255 KGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMAT 314

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN L++G    G++  A +LL++  ++G  PN  SYT LI   C+  +   A    ++M 
Sbjct: 315 YNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMS 374

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G + D+VTY  LI G   + ++D    + + M+++G+LP+   Y  +M    KK  L 
Sbjct: 375 ERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLP 434

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
               L+ EM      PD      ++    + G+ +EA  ++       + PG   +  M+
Sbjct: 435 AAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMI 494

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G+   G + +A   FK M+ +GL S  ++ T   +++  ++   +  A  ++  +V   
Sbjct: 495 KGYCKFGMMKDALLCFKRMI-QGLHSPDEF-TYSTIIDGYIKMNDLHGALRMFGLMVKGA 552

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C+ NV  +T+ I+    +G +  A      M+   + P   T+  L+    K  N   A 
Sbjct: 553 CKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKAC 612

Query: 581 EITEKV 586
              E++
Sbjct: 613 SFFEQM 618


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 189/377 (50%), Gaps = 8/377 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ++I +LSK +       +   M K    P  I   ++  L+  + S+   K+AI + 
Sbjct: 245 TYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCI---MYTSLVHGYCSSGKPKEAIGIF 301

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M ++G EPD   +  L+D LCKN    EA K+FD + +R  KP    + +LL+G+  E
Sbjct: 302 KKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATE 361

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G LVE   +L  M   G +    ++N ++  YA+  K+ +A  +   MR++G +P+  +Y
Sbjct: 362 GALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNY 421

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             ++  LC   ++++A   F  ++  G   ++V +TTLI G C   K D+  E+   MI 
Sbjct: 422 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMID 481

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RGI  + + +  IM    KK  + E   L   M +IG  P+ + YN +I   C  G++ E
Sbjct: 482 RGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDE 541

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ +   M    + P   ++  +++G+   G + +     +EM G+G+   P   T + L
Sbjct: 542 AMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGV--NPGIVTYEML 599

Query: 497 LNSLLRAQKVEMAKDVW 513
           L  L +A +   AK+++
Sbjct: 600 LQGLFQAGRTVAAKELY 616



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 236/537 (43%), Gaps = 54/537 (10%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVV-LRPGLTERVINRCGDAGNLGYRYYMWASKQ 131
           D  ++F  L K   R    +L    S V    P +   + NR   AG          S  
Sbjct: 45  DAHQVFDRLLKRGDRASIFDLNRALSDVARASPAVAISLFNRMPRAG--------ATSAA 96

Query: 132 PNYVHSYDVYRALIKSLSKMR-KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           PN + +Y +     + L ++   F  V  ++    + +P  + +     L    A  R +
Sbjct: 97  PN-IATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPLCT--AGGRAM 153

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---RFKPSLRHFT 247
           +  I VL  MP+ GC+PD F +  LL  LC + + ++A  L   M +   R    +  +T
Sbjct: 154 RMDI-VLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYT 212

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++ G  +EG+L +A  +   M D G  PD+V Y++++S  ++   M  A ++   M + 
Sbjct: 213 TVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKN 272

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+   YT L+   C   K +EA   F +M R G E DVVTYT L+   CK+ K    
Sbjct: 273 GVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEA 332

Query: 368 YEILDSMIQRGILPNQLTY---LH--------------------------------IMLA 392
            +I DS+++RG  P+  TY   LH                                IM A
Sbjct: 333 RKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGA 392

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           + K  +++E + +   MR+ G  PD+ NY  V+ + C  G + +A++ +N +++  L+P 
Sbjct: 393 YAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPN 452

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
              F  ++HG        +  E   EM+ RG+     +    A++ +L +  +V  AK++
Sbjct: 453 IVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIF--FNAIMGNLCKKGRVIEAKNL 510

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  +V  G E N   +   I     +G + EA      M+   V P   T+  ++ G
Sbjct: 511 FDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIING 567



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 37/253 (14%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L++ M K+  QL    +F ++M  +A    V +A+ V   M + G  PD   +G +LD L
Sbjct: 370 LLDLMMKKGMQL-GHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 428

Query: 220 CKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYG------W------------------- 253
           C    V +A   F+ ++ E   P++  FT+L++G      W                   
Sbjct: 429 CTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDT 488

Query: 254 ----------CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
                     CK+G+++EAK +   M   G EP+   YN L+ GY   GKM +A +LL  
Sbjct: 489 IFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGV 548

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M   G  P+  +Y  +I    +  ++E+      EM+  G    +VTY  L+ G  ++ +
Sbjct: 549 MVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGR 608

Query: 364 IDRCYEILDSMIQ 376
                E+   MI+
Sbjct: 609 TVAAKELYLRMIK 621


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 231/511 (45%), Gaps = 40/511 (7%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           Y+   S+ P  +H+ +    +++ L    K   + A+ E M+K+  +    + ++ + + 
Sbjct: 108 YFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRR-DLDTYLTIFKA 166

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
            +    +++   VL++M K G   + + +  L+  L ++    EA +++  M  E  KPS
Sbjct: 167 LSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPS 226

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L+ +++L+    K+        +L +M+D G  P++  +   +    + GK+ +A+E+ +
Sbjct: 227 LKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFR 286

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------------- 337
            M  +GC P+  +YTVLI ALC   ++E A   FV                         
Sbjct: 287 RMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFG 346

Query: 338 ----------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
                     +ME  G   DVVT+T L+   CK+R  D  +   D M ++GILPN  TY 
Sbjct: 347 DLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYN 406

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++    +   +E+ ++L+G M  +G  P    YN+ I    K GE  +AV  + +M+A 
Sbjct: 407 TLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAK 466

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
            + P   +    ++     G L EA   F  +   GL  AP   T   ++    +  +V+
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL--APDSVTYNMMMKCYSKVGQVD 524

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A ++ S ++  GCE +V      I SL+  G V EA      M D  + P   T+  L+
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLL 584

Query: 568 RGLKKLYNRQIAAEITEK-VRKMAAERQITF 597
            GL K    Q A E+ E  + K  +   I+F
Sbjct: 585 SGLGKEGRVQKAIELFESMIEKKCSPNTISF 615



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 187/367 (50%), Gaps = 8/367 (2%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           ++++  D G+L      W+  + + Y+     +  L+  L K R F   +A  + MRK+ 
Sbjct: 338 LLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P L T    +  + R   A  ++ A+++L  M   G +P  + +   +D   K+    
Sbjct: 398 ILPNLHTYNTLICGLLR---AGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETG 454

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A + F++M+ +   P++    + LY   + G+L EAK +   +++ G  PD V YN ++
Sbjct: 455 KAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMM 514

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
             Y+++G++ +A  LL EM R GC+P+      LI +L +  +++EA + F  M+     
Sbjct: 515 KCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             VVTY TL+SG  K  ++ +  E+ +SMI++   PN +++  ++    K +E+E  +++
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKM 634

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             +M  + C PDV  YN VI    K  ++  A   +++++  S+ P   +   ++ G + 
Sbjct: 635 FSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTICTLLPGLVK 693

Query: 466 QGCLIEA 472
            G + +A
Sbjct: 694 CGQIGDA 700



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 161/320 (50%), Gaps = 8/320 (2%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  LI  L ++      W L ++M+     P   T   F +L+     +  + +  E+  
Sbjct: 791  YNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFT---FNMLLAVHGKSGKITELFELYK 847

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEG 257
            EM    C+PD   +  ++ +L K++++ +A   F D +   F+P+ R +  L+ G  K G
Sbjct: 848  EMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVG 907

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +L EA  +  +M D G +P+  ++N L++GY ++G    A +L K M  +G  P+  SYT
Sbjct: 908  RLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYT 967

Query: 318  VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +L+  LC   +++EA   F E++ +G + D + Y  +I+G  KS++++    + + M  R
Sbjct: 968  ILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNR 1027

Query: 378  GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE- 436
            GI+P+  TY  +ML       +E+   +  E++  G  PDV  YN +IR    L E  E 
Sbjct: 1028 GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIR-GYSLSENPEH 1086

Query: 437  AVNVWNEMEAASLSPGTDSF 456
            A  V+  M     +P   ++
Sbjct: 1087 AYTVYKNMMVDGCNPNIGTY 1106



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 199/473 (42%), Gaps = 46/473 (9%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            V  +LI SL K  +    W + + M+  K  P ++T   +  L+        V+KAIE+ 
Sbjct: 544  VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVT---YNTLLSGLGKEGRVQKAIELF 600

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
            + M +  C P+   F  LLD  CKN  V+ A K+F +M     KP +  + +++YG  KE
Sbjct: 601  ESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKE 660

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK-------------- 302
             K+  A +   Q+K +   PD V    LL G  + G++ DA  + +              
Sbjct: 661  NKVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSF 719

Query: 303  ----------------------EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
                                  E+   G     +    L++ LC+ ++   A + F +  
Sbjct: 720  WEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFT 779

Query: 341  RS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            +  G    + +Y  LI    +    ++ +++   M   G  P+  T+  ++  H K  ++
Sbjct: 780  KKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKI 839

Query: 400  EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
             E  EL  EM    C PD   YN+VI    K   L +A++ + ++ ++   P   ++  +
Sbjct: 840  TELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL 899

Query: 460  VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
            + G    G L EA   F+EM   G    P       L+N   +    E A  ++  +V +
Sbjct: 900  IDGLAKVGRLEEAMRLFEEMSDYG--CKPNCAIFNILINGYGKIGDTETACQLFKRMVNE 957

Query: 520  GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G   ++ ++TI +  L   G V EA  Y  ++    + P    + +++ GL K
Sbjct: 958  GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 184/386 (47%), Gaps = 18/386 (4%)

Query: 190  VKKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHF 246
            + KAI   +E+   G C  D F+   L+  LCK+     A ++FD+  ++    P+L  +
Sbjct: 733  MDKAIIFAEELVLNGICREDSFLIP-LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASY 791

Query: 247  TSLLYGWCKEGKLVEAKY------VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
              L+      G+L+E  Y      +   MK+ G  PD   +N LL+ + + GK+T+ FEL
Sbjct: 792  NCLI------GELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 301  LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             KEM  + C P+A +Y ++I +L +   +++A   F ++  S       TY  LI G  K
Sbjct: 846  YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 361  SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              +++    + + M   G  PN   +  ++  + K  + E   +L   M   G  PD+ +
Sbjct: 906  VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKS 965

Query: 421  YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
            Y +++   C  G + EA+  +NE+++  L P   ++  +++G      + EA   + EM 
Sbjct: 966  YTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR 1025

Query: 481  GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             RG++  P   T  +L+ +L  A  VE AK ++  +   G E +V+ +   I     + +
Sbjct: 1026 NRGIV--PDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSEN 1083

Query: 541  VKEACSYCLDMMDADVMPQPDTFAKL 566
             + A +   +MM     P   T+A+L
Sbjct: 1084 PEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 222/509 (43%), Gaps = 40/509 (7%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
           ++ +R++ WA KQ NY+H  + Y +LI  LS    F  V  +  E  KEK  L+T     
Sbjct: 136 DIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEF-KEKGFLMTVFAAN 194

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
            L+R F +  MV++ + V   M + G EP  + F  LL+ L  +        +F E  ER
Sbjct: 195 SLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNS--------MFIESAER 246

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
                                     V   M+     PD+V YN ++ GY + G    A 
Sbjct: 247 --------------------------VFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAM 280

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E   +M ++  +P+  +Y  LIQA       +     + EME  G E     Y+ +I G 
Sbjct: 281 EKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGL 340

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK  +      + ++M ++G   N   Y  ++ A+ K   + E + L   M+  G  PD 
Sbjct: 341 CKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDD 400

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y V++   CK G L EAV  +   +   ++     +  ++ G    G + EA ++F+E
Sbjct: 401 VTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEE 460

Query: 479 MVGRGLLSAPQYG-TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           MV RG    PQ      AL+++L ++ K+E A  ++  +  +GC+  VY +TI I  LF 
Sbjct: 461 MVERG---CPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFK 517

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
               +EA      M+D  + P   +F  L  GL        A +I +++  M    +  F
Sbjct: 518 EHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPETAF 577

Query: 598 K-MYKRRGERDLKEKAKKQVDGRKRRARQ 625
           + M     +    E+A K  DG   R R+
Sbjct: 578 EDMINVLCKAGRTEQACKLADGIVDRGRE 606



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 2/217 (0%)

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           E  K+    +    +  L+     A  V +A +  +EM + GC  D + +  L+DAL K+
Sbjct: 424 EFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKS 483

Query: 223 SSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
             ++EA  LF  M +E    ++  +T L+ G  KE +  EA  +   M D G  P    +
Sbjct: 484 GKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASF 543

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
             L  G    GK+  A ++L E+   G  P   ++  +I  LC+  + E+A +    +  
Sbjct: 544 RALSVGLCLSGKVARACKILDELAPMGVIPET-AFEDMINVLCKAGRTEQACKLADGIVD 602

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
            G E      T LI+   K+   D   +++ S I  G
Sbjct: 603 RGREVPGRVRTILINALRKAGNADLAMKLMHSKIGIG 639


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 238/513 (46%), Gaps = 29/513 (5%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           G V       +VI    DA  +   + ++   K+   V S   Y  LI S  K       
Sbjct: 455 GFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQA 514

Query: 158 WALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
               +EM  +   P ++T   +  L+  +  A+ +  A E+ + M   GC+P+   +  L
Sbjct: 515 RKWFDEMLHKGCTPNVVT---YTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTAL 571

Query: 216 LDALCKNSSVKEAAKLFDEMR---------ERFK--------PSLRHFTSLLYGWCKEGK 258
           +D  CK   +++A +++  MR         + FK        P++  + +L+ G CK  +
Sbjct: 572 IDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANR 631

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +L  M   G EP+ +VY+ ++ G+ ++GK+ DA E+  +M  +G  PN  +Y+ 
Sbjct: 632 VKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSS 691

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
            I  L +  +++   +   +M  + C  +VV YT ++ G CK  K D  Y+++  M ++G
Sbjct: 692 FIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKG 751

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN +TY  ++    K  ++E+C+EL  +M   GC P+   Y V+I   C  G L EA 
Sbjct: 752 CNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAY 811

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + +EM+         S   ++ GF  +   I +     E+      S P     + L++
Sbjct: 812 KLLDEMKQTYWPKHILSHRKIIEGFSQE--FITSIGLLDELSENE--SVPVDSLYRILID 867

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCEL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           + ++A ++E+A D+   I +       N Y +   I +L     V +A      M+  +V
Sbjct: 868 NYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNV 927

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           +P+      L++GL K+   Q A ++++ + +M
Sbjct: 928 VPELSILVHLIKGLIKVDKWQEALQLSDSICQM 960



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 112/488 (22%), Positives = 210/488 (43%), Gaps = 50/488 (10%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWAL- 160
           L   L   V+N   +   L  ++++WA +Q  Y H+  V+  L+  L           L 
Sbjct: 104 LNDSLVVEVMNNVKNP-ELCVKFFLWAGRQIGYSHTPQVFDKLLDLLGCNVNADDRVPLK 162

Query: 161 -MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            + E++ +  +L+   +   L+R+         A+E L  +  +G +P +  +  L+   
Sbjct: 163 FLMEIKDDDHELLR-RLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVF 221

Query: 220 CKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
            +   +  A  +  EM    F       +   Y  CK GK  EA  ++ + +D  F PD 
Sbjct: 222 LRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAED--FVPDT 279

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V YN ++SG  +     +A ++L  MR   C PN  +Y +L+    R  ++    R    
Sbjct: 280 VFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSM 339

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY------------ 386
           M   GC  +   + +LI  +CKSR     Y++   MI+ G  P  L Y            
Sbjct: 340 MITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEE 399

Query: 387 -------------------LHIMLAHEKKEELEECV----------ELMGEMRKIGCVPD 417
                              L ++L          C+          +++ EM   G VPD
Sbjct: 400 QPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPD 459

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
            S Y+ VI   C   ++++A +++ EM+   + P   ++ +++  F   G + +A ++F 
Sbjct: 460 DSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFD 519

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ +G    P   T  AL+++ L+A+++ +A +++  ++ +GC+ NV  +T  I     
Sbjct: 520 EMLHKG--CTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577

Query: 538 NGHVKEAC 545
            G +++AC
Sbjct: 578 AGQIEKAC 585



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 206/468 (44%), Gaps = 34/468 (7%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMV 190
           ++V     Y  ++  L +   F     ++  MR     P ++T   + IL+        +
Sbjct: 274 DFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVT---YRILLSGCLRKGQL 330

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
            +   +L  M   GC P+  +F  L+ A CK+     A KLF +M +   +P    +   
Sbjct: 331 GRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIF 390

Query: 250 LYGWCKEGK--------LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           +   C   +        LVE  Y   +M D G   + V  +N        GK   AF+++
Sbjct: 391 IGSVCSNEEQPSSDILDLVEKAYS--EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKII 448

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            EM  KG  P+ ++Y+ +I  LC   K+E+A   F EM+R+G    V TYT LI  FCK+
Sbjct: 449 CEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKA 508

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
             I +  +  D M+ +G  PN +TY  ++ A+ K +++    EL   M   GC P+V  Y
Sbjct: 509 GLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTY 568

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV-----------VMVHGFLGQGC-- 468
             +I   CK G++++A  ++  M     S   D +            V+ +G L  G   
Sbjct: 569 TALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCK 628

Query: 469 ---LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
              + EA E    M+  G    P      A+++   +  K++ A++V++ +  +G   N+
Sbjct: 629 ANRVKEAHELLDTMLAHG--CEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNL 686

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           Y ++ +I  LF +  +         M++    P    + +++ GL K+
Sbjct: 687 YTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKI 734


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 170/316 (53%), Gaps = 1/316 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           ++ +++  F  A ++  A+ V DEM   GC PD   +  LL+ LCK   + +A  L +EM
Sbjct: 18  IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 77

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           RER   P L  FT+L++G+C EGKL +A  +   M +    PDIV YN L+ G  + G +
Sbjct: 78  RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDL 137

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A +L  +M  +   PN  +Y++LI + C   ++E+A     EM   G   +++TY ++
Sbjct: 138 DKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 197

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I G+C+S  + +  + L  M+   + P+ +TY  ++  + K++++ +  +L+  M K   
Sbjct: 198 IKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV 257

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PDV  YN++I      G ++EA  ++ +M A  + P   +++ M++G +  G   EA +
Sbjct: 258 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 317

Query: 475 YFKEMVGRGLLSAPQY 490
              EM+ RG     ++
Sbjct: 318 LHDEMLQRGFAPDDKF 333



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 152/299 (50%), Gaps = 2/299 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T ++ G+C+ G + +A  V  +M   G  PD+V YN LL+G  +  ++ DA  LL EMR
Sbjct: 19  YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 78

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  P+  ++T LI   C   K+++A + F  M       D+VTY TLI G C+   +D
Sbjct: 79  ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD 138

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +  ++ D M  R I PN +TY  ++ +H +K ++E+    + EM   G +P++  YN +I
Sbjct: 139 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 198

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +  C+ G + +      +M    +SP   ++  ++HG++ +  + +A +    M    + 
Sbjct: 199 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV- 257

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             P   T   L+N       V+ A  ++  +  KG E + Y +   I+   + G+ KEA
Sbjct: 258 -QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEA 315



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 158/308 (51%), Gaps = 3/308 (0%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCK 255
           L EM  +G  PD  ++  ++   C+   + +A ++ DEM      P +  + +LL G CK
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           E +L++A+ +L +M++ G  PD+  +  L+ GY   GK+  A +L   M  +   P+  +
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI  +CR   +++AN  + +M       + VTY+ LI   C+  +++  +  LD MI
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 183

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +GILPN +TY  I+  + +   + +  + + +M      PD+  YN +I    K  ++ 
Sbjct: 184 NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 243

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  + N ME   + P   ++ ++++GF   G + EA   F++M  +G+   P   T  +
Sbjct: 244 DAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI--EPDRYTYMS 301

Query: 496 LLNSLLRA 503
           ++N  + A
Sbjct: 302 MINGHVTA 309



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 138/280 (49%), Gaps = 6/280 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L K R+      L+ EMR+    P L T   F  L+  +     + KA+++ D
Sbjct: 54  YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCT---FTTLIHGYCIEGKLDKALQLFD 110

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M      PD   +  L+D +C+   + +A  L+D+M  R   P+   ++ L+   C++G
Sbjct: 111 TMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKG 170

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A   L +M + G  P+I+ YN+++ GY + G ++   + L++M      P+  +Y 
Sbjct: 171 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYN 230

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    + +KM +A +    ME+   + DVVTY  LI+GF     +     I + M  +
Sbjct: 231 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 290

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           GI P++ TY+ ++  H      +E  +L  EM + G  PD
Sbjct: 291 GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 4/287 (1%)

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L+EMR  G  P+   YT++I   CR   M +A R   EM   GC  DVVTY TL++G CK
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
            R++     +L+ M +RG+ P+  T+  ++  +  + +L++ ++L   M      PD+  
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN +I   C+ G+L +A ++W++M +  + P   ++ +++     +G + +A  +  EM+
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 183

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            +G+L  P   T  +++    R+  V   +     ++      ++  +   IH       
Sbjct: 184 NKGIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDK 241

Query: 541 VKEACSYCLDMMDAD-VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           + +A    L+MM+ + V P   T+  L+ G     N Q A  I EK+
Sbjct: 242 MHDAFKL-LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM 287


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 189/376 (50%), Gaps = 8/376 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I +LSK +       +   M K    P  I   ++  L+  + S+   K+AI +  
Sbjct: 245 YSSIISALSKTQAMDKATQVFTRMVKNGVMPDCI---MYTSLVHGYCSSGKPKEAIGIFK 301

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M ++G EPD   +  L+D LCKN    EA K+FD + +R  KP    + +LL+G+  EG
Sbjct: 302 KMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEG 361

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LVE   +L  M   G +    ++N ++  YA+  K+ +A  +   MR++G +P+  +Y 
Sbjct: 362 ALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYG 421

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  LC   ++++A   F  ++  G   ++V +TTLI G C   K D+  E+   MI R
Sbjct: 422 TVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDR 481

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  + + +  IM    KK  + E   L   M +IG  P+ + YN +I   C  G++ EA
Sbjct: 482 GICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEA 541

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + +   M    + P   ++  +++G+   G + +     +EM G+G+   P   T + LL
Sbjct: 542 MKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGV--NPGIVTYEMLL 599

Query: 498 NSLLRAQKVEMAKDVW 513
             L +A +   AK+++
Sbjct: 600 QGLFQAGRTVAAKELY 615



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 147/591 (24%), Positives = 246/591 (41%), Gaps = 101/591 (17%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVV-LRPGLTERVINRCGDAGNLGYRYYMWASKQ 131
           D  ++F  L K   R    +L    S V    P +   + NR   AG          S  
Sbjct: 45  DAHQVFDRLLKRGDRASIFDLNRALSDVARASPAVAISLFNRMPRAG--------ATSAA 96

Query: 132 PNYVHSYDVYRALIKSLSKMR-KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           PN + +Y +     + L ++   F  V  ++    +  P L     F  L++     R  
Sbjct: 97  PN-IATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPIL-----FSPLLKGLCDRRRT 150

Query: 191 KKAIE-VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---RFKPSLRHF 246
             A++ VL  MP+ GC+PD F +  LL  LC + + ++A  L   M +   R    +  +
Sbjct: 151 SDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAY 210

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T+++ G  +EG+L +A  +   M D G  PD+V Y++++S  ++   M  A ++   M +
Sbjct: 211 TTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVK 270

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P+   YT L+   C   K +EA   F +M R G E DVVTYT L+   CK+ K   
Sbjct: 271 NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTE 330

Query: 367 CYEILDSMIQRGILPNQLTY---LH--------------------------------IML 391
             +I DS+++RG  P+  TY   LH                                IM 
Sbjct: 331 ARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMG 390

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A+ K  +++E + +   MR+ G  PD+ NY  V+ + C  G + +A++ +N +++  L+P
Sbjct: 391 AYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAP 450

Query: 452 GTDSFVVMVHGF-------------------------------LGQGC----LIEACEYF 476
               F  ++HG                                +G  C    +IEA   F
Sbjct: 451 NIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLF 510

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             MV  G+   P   T   L++      K++ A  +   +V  G + +   +   I+   
Sbjct: 511 DLMVRIGI--EPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYS 568

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQI 578
            NG +++  +   +M    V P   T+  L++GL         K+LY R I
Sbjct: 569 QNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMI 619



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 37/253 (14%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L++ M K+  QL    +F ++M  +A    V +A+ V   M + G  PD   +G +LD L
Sbjct: 369 LLDLMMKKGMQL-GHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 427

Query: 220 CKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYG------W------------------- 253
           C    V +A   F+ ++ E   P++  FT+L++G      W                   
Sbjct: 428 CTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDT 487

Query: 254 ----------CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
                     CK+G+++EAK +   M   G EP+   YN L+ GY   GKM +A +LL  
Sbjct: 488 IFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGV 547

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M   G  P+  +Y  +I    +  ++E+      EM+  G    +VTY  L+ G  ++ +
Sbjct: 548 MVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGR 607

Query: 364 IDRCYEILDSMIQ 376
                E+   MI+
Sbjct: 608 TVAAKELYLRMIK 620


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 179/344 (52%), Gaps = 4/344 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y A+I  L+K   F     L++EMR E+   ++++V + ++RR+  A M  +A E+   
Sbjct: 141 LYAAMIDLLAKHHHFPLARHLLDEMR-ERSIPVSSQVILAIIRRYVRAGMSPEASELFRR 199

Query: 200 MPKYGCE-PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
           M +YG   PD  V   LL AL K     EA  LFD  +  F P +  +T+L++ WC+ G 
Sbjct: 200 MEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSVFPPDVVLYTTLVHAWCRAGC 259

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L +A+ V  +M+ AG  P++  Y +++    + G++  A ELL +M   GC PN  ++  
Sbjct: 260 LDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFNA 319

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC--KSRKIDRCYEILDSMIQ 376
           +++A  +  + E+  +   +M + GC+ D++TY  L+   C      +D   ++L  MI 
Sbjct: 320 IMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAKMIA 379

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G +P+  T+  ++        +E    L   M+++ C P+V  YN++++L  K   +  
Sbjct: 380 KGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDM 439

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
            + +  +M+A  + P  +++  ++  F G+G    A    +EMV
Sbjct: 440 VLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMV 483



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 153/379 (40%), Gaps = 75/379 (19%)

Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           ++  ++D L K+     A  L DEMRER  P                  V ++ +L    
Sbjct: 141 LYAAMIDLLAKHHHFPLARHLLDEMRERSIP------------------VSSQVILA--- 179

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD-PNANSYTVLIQALCRMEKM 329
                        ++  Y + G   +A EL + M   G   P+      L+ AL +    
Sbjct: 180 -------------IIRRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLA 226

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
            EA +A  +  +S    DVV YTTL+  +C++  +D+  ++   M Q GI+PN  TY  +
Sbjct: 227 GEA-QALFDSYKSVFPPDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSV 285

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           + A  +  ++    EL+ +M + GC P+ + +N ++R   K G  ++ + V N+M     
Sbjct: 286 IDAMYRAGQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGC 345

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
            P   ++  ++    G+G                                      ++ A
Sbjct: 346 DPDIITYNFLMETHCGKG-----------------------------------QSNLDAA 370

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             V + ++ KGC  + + +   +  +   G+V+ A      M +    P   T+  LM  
Sbjct: 371 MKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLM-- 428

Query: 570 LKKLYNRQIAAEITEKVRK 588
             KL+N++ + ++  +++K
Sbjct: 429 --KLFNKEKSMDMVLRIKK 445



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 87/246 (35%), Gaps = 39/246 (15%)

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  +I    K         +LD M +R I  +    L I+  + +     E  EL   M 
Sbjct: 142 YAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFRRME 201

Query: 411 KIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           + G  VPD +    ++    K     EA  +++  ++    P    +  +VH +   GCL
Sbjct: 202 EYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSV-FPPDVVLYTTLVHAWCRAGCL 260

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A + F EM   G++                                      NVY +T
Sbjct: 261 DKAEQVFAEMQQAGIMP-------------------------------------NVYTYT 283

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             I +++  G V  A      MM+    P   TF  +MR   K    +   ++  ++R++
Sbjct: 284 SVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQL 343

Query: 590 AAERQI 595
             +  I
Sbjct: 344 GCDPDI 349


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 213/476 (44%), Gaps = 17/476 (3%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  +I+S  +   + +   ++E +  +   L T    +++         V + +E+L +
Sbjct: 153 MYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVI-NAICDQGCVDEGLEMLRK 211

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-----------RERFKPSLRHFTS 248
           +P +GCE D   +  +L  LC      +  +L DEM           +    P +R + +
Sbjct: 212 LPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYAT 271

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CKEG    A  +L +M   G +P++V YN +L G     +   A ELL EM +K 
Sbjct: 272 IIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKN 331

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  +  ++ +L+   C+   ++       +M   GC  DV+TYTT+I+GFCK   ID   
Sbjct: 332 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAV 391

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L +M   G  PN ++Y  ++      E   +  ELM  M + GC+P+   +N +I   
Sbjct: 392 MLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFL 451

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G +++A+ +  +M     +P   S+  ++ G    G   EA E    M+ +G+   P
Sbjct: 452 CKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGI--TP 509

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  ++  +L R  +++    ++  I       +   +   I SL        A  + 
Sbjct: 510 NVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFL 569

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
             M+    MP   T+  L++GL    +  +  E  + + ++ + R +   + +R G
Sbjct: 570 AYMVSNGCMPNESTYTALIKGLA---SEGLLCEAQDLLSELCSRRAVRKHLTRRFG 622



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 171/407 (42%), Gaps = 25/407 (6%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+R    A     A+  LD         D   +  ++   C+   V+ A +L   +    
Sbjct: 58  LIRSLCVAGRTADAVRALDAAGNAAGVVD---YNAMVAGYCRVGQVEAARRLAAAVP--V 112

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P+   +  ++ G C  G++ +A  VL +M      P   +Y+ ++    + G  + A  
Sbjct: 113 PPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALR 172

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +L+ +  KG   +  +  ++I A+C    ++E      ++   GCEAD+V+Y  ++ G C
Sbjct: 173 VLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLC 232

Query: 360 KSRKIDRCYEILDSMI----------QRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            +++     E++D M+          Q G  P+   Y  I+    K+   E   E++  M
Sbjct: 233 AAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRM 292

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  P+V  YN V++  C     ++A  +  EM   +      +F ++V  F   G +
Sbjct: 293 PSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLV 352

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSL----LRAQKVEMAKDVWSCIVTKGCELNV 525
               E  ++M+  G +  P   T   ++N      L  + V + K++ SC    GC+ N 
Sbjct: 353 DRVIELLEQMLEHGCM--PDVITYTTVINGFCKEGLIDEAVMLLKNMPSC----GCKPNT 406

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            ++TI +  L S     +A      M+    +P P TF  ++  L K
Sbjct: 407 ISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCK 453


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 221/468 (47%), Gaps = 16/468 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL-----ITTEVFVILMRRFASAR 188
           Y HS    R ++  L  +R+     +L++ + +    L         V   L+   A   
Sbjct: 81  YAHS----RRVLSRLVALRRPHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRG 136

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
           ++  A+  +  + +    P+      +L  L ++ S +   +LF+++     P++  F  
Sbjct: 137 LLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLP---APNVFTFNI 193

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CKEG+L EA+ +  +MK+ G  PD+V +N+L+ GY + G++ +  +L++EMRR G
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  +  +Y  LI   C+  +ME A   F  M+R G  A+VVT++T +  FCK   +    
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAM 313

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++   M  RG+  N+ TY  ++    K   L++ + L+ EM + G   +V  Y V++   
Sbjct: 314 KLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSA 487
           CK  ++ EA +V   ME A +      +  ++HG        +A     EM  +GL L  
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
             YG   AL+  L    K++ AK + + +   G E N   +T  + + F +G V EA + 
Sbjct: 434 SLYG---ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
              ++D+   P   T+  L+ GL K  +   A     K+R +  +  +
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 198/410 (48%), Gaps = 10/410 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  +    +     M++E     ++T   FV     F    +V++A+++  
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFV---DAFCKEGLVREAMKLFA 317

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEG 257
           +M   G   +EF + CL+D  CK   + +A  L DEM  +  P ++  +T L+ G CKE 
Sbjct: 318 QMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKER 377

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA+ VL  M+ AG   + ++Y  L+ G+        A  LL EM+ KG + + + Y 
Sbjct: 378 KVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG 437

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LIQ LC + K++EA     +M+ SG E + + YTT++    KS K+     +L  ++  
Sbjct: 438 ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDS 497

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +TY  ++    K   ++E +    +MR +G  P+V  Y  ++   CK G L EA
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEA 557

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKAL 496
           V ++NEM    +S     +  ++ G+L QG L +A     +M+  GL L    Y      
Sbjct: 558 VQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCY---TCF 614

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           ++       +  A++V+S ++  G   +   +   I      G+++EA S
Sbjct: 615 ISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAIS 664



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 220/486 (45%), Gaps = 41/486 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  +I  L K  +     +L   M KE   L     F  L+  +     + +  ++++EM
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRM-KEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            + GC+ D   +  L++  CK   ++ A   F  M RE    ++  F++ +  +CKEG +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  QM+  G   +   Y  L+ G  + G++ DA  LL EM R+G   N  +YTVL
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTT-------------------------- 353
           +  LC+  K+ EA      ME++G  A+ + YTT                          
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL 429

Query: 354 ---------LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                    LI G C   K+D    +L  M + G+ PN + Y  +M A  K  ++ E + 
Sbjct: 430 ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           ++ ++   G  P+V  Y  +I   CK G + EA++ +N+M    L P   ++  +V G  
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLC 549

Query: 465 GQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             GCL EA + F EMV +G+ L    Y    ALL+  L+   +  A  + + ++  G +L
Sbjct: 550 KNGCLNEAVQLFNEMVHKGMSLDKVVY---TALLDGYLKQGNLHDAFALKAKMIDSGLQL 606

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           +++ +T +I    +   + EA     +M+   + P    +  L+   +KL N + A  + 
Sbjct: 607 DLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQ 666

Query: 584 EKVRKM 589
           +++ ++
Sbjct: 667 DEMERV 672



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 210/454 (46%), Gaps = 45/454 (9%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P   T    ++ + R  S R+V++  E   ++P     P+ F F  ++D LCK   + EA
Sbjct: 155 PNTRTCNHILLRLARDRSGRLVRRLFE---QLPA----PNVFTFNIVIDFLCKEGELAEA 207

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
             LF  M+E    P +  F SL+ G+ K G+L E + ++ +M+ +G + D+V YN L++ 
Sbjct: 208 RSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINC 267

Query: 288 YAQMGKM-------------------------TDAF----------ELLKEMRRKGCDPN 312
           + + G+M                          DAF          +L  +MR +G   N
Sbjct: 268 FCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN 327

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT LI   C+  ++++A     EM R G   +VVTYT L+ G CK RK+    ++L 
Sbjct: 328 EFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M + G+  N+L Y  ++  H   +  E+ + L+ EM+  G   D+S Y  +I+  C + 
Sbjct: 388 MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVH 447

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +L EA ++  +M+ + L P    +  M+      G + EA    ++++  G    P   T
Sbjct: 448 KLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF--QPNVIT 505

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             AL++ L +A  ++ A   ++ +   G + NV A+T  +  L  NG + EA     +M+
Sbjct: 506 YCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMV 565

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              +      +  L+ G  K  N   A  +  K+
Sbjct: 566 HKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 5/317 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDE 199
           Y  L+  L K RK      ++  M  EK  +   E+ +  L+      +  +KA+ +L E
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMM--EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G E D  ++G L+  LC    + EA  L  +M E   +P+   +T+++    K GK
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +L ++ D+GF+P+++ Y  L+ G  + G + +A     +MR  G DPN  +YT 
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC+   + EA + F EM   G   D V YT L+ G+ K   +   + +   MI  G
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           +  +   Y   +        + E  E+  EM   G  PD + YN +I    KLG L+EA+
Sbjct: 604 LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 439 NVWNEMEAASLSPGTDS 455
           ++ +EME   L   TDS
Sbjct: 664 SLQDEMERV-LPSCTDS 679


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 216/471 (45%), Gaps = 11/471 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y +LI     +    A   +++ M  EK        + +L++ +     +
Sbjct: 258 EPNIV----TYHSLINGYVSLGDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQCKM 312

Query: 191 KKAIEVLDEMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            +A +VL  M +     PDE  +G L+D  C+   + +A +L DEM R   K +L    S
Sbjct: 313 DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNS 372

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+CK G++ EA+ V+ +M D   +PD   YN LL GY + G  ++AF L  +M ++G
Sbjct: 373 LINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEG 432

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            +P   +Y  L++ LCR+   ++A + +  M + G   D V Y+TL+ G  K    +   
Sbjct: 433 IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGAS 492

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   ++ RG   +++T+  ++    K  ++ E  E+  +M+ +GC PD   Y  +I   
Sbjct: 493 TLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   + +A  V   ME   +SP  + +  ++ G      L+E  +   EM  RGL   P
Sbjct: 553 CKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGL--TP 610

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  AL++   +   ++ A   +  +   G   N+   +  +  L+  G + EA    
Sbjct: 611 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 670

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM 599
             M+D    P  + F K    ++    ++IA  + E  +       I + +
Sbjct: 671 QKMVDHGFFPDHECFLK--SDIRYAAIQKIADSLDESCKTFLLPNNIVYNI 719



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 134/553 (24%), Positives = 241/553 (43%), Gaps = 71/553 (12%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRF 184
           W  K  +Y      Y  L+    +       + L ++M +E  +P ++T   +  L++  
Sbjct: 396 WNLKPDSYS-----YNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT---YNTLLKGL 447

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
                   A+++   M K G  PDE  +  LLD L K  + + A+ L+ ++  R F  S 
Sbjct: 448 CRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSR 507

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF----- 298
             F +++ G CK GK+VEA+ +  +MKD G  PD + Y  L+ GY +   +  AF     
Sbjct: 508 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 299 ------------------------------ELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
                                         +LL EM  +G  PN  +Y  LI   C+   
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +++A  ++ EM  +G  A+++  +T++SG  +  +ID    ++  M+  G  P+   +L 
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLK 687

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
             + +   +++ + ++   E  K   +P+   YN+ I   CK G++ +A   ++ +    
Sbjct: 688 SDIRYAAIQKIADSLD---ESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG 744

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   ++  ++HG+   G + EA     EM+ RGL+  P   T  AL+N L +++ V+ 
Sbjct: 745 FVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLV--PNIVTYNALINGLCKSENVDR 802

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A+ ++  +  KG   NV  +   I      G++  A      M++  + P   T++ L+ 
Sbjct: 803 AQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862

Query: 569 GL---------KKLYNRQIAAEITEKVRKM---------AAERQITFKMYKRRGERDLKE 610
           GL          KL N+ I A +  K+ +          + E Q   K+Y     R L  
Sbjct: 863 GLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIRCLST 922

Query: 611 KA--KKQVDGRKR 621
            A   KQVD R +
Sbjct: 923 TAISHKQVDLRPQ 935



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 223/494 (45%), Gaps = 34/494 (6%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR-----KE 167
           R     +LG+  + + SKQ N+  +   Y  L+  LS+ R +    A + ++      K+
Sbjct: 79  RLNPTASLGF--FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKD 136

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +  +I  E+ V + R FA +  V                     F  +L    +    K 
Sbjct: 137 RGNVIWDEL-VGVYREFAFSPTV---------------------FDMILKVYVEKGLTKN 174

Query: 228 AAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +FD M +  + PSLR   SLL    K G+   A YV  QM   G  PD+ + + +++
Sbjct: 175 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 234

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            + + GK+ +A   +K+M   G +PN  +Y  LI     +  +E A      M   G   
Sbjct: 235 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 294

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVEL 405
           +VVTYT LI G+CK  K+D   ++L  M +   ++P++  Y  ++  + +  ++++ V L
Sbjct: 295 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 354

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + EM ++G   ++   N +I   CK GE+ EA  V   M   +L P + S+  ++ G+  
Sbjct: 355 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCR 414

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           +G   EA     +M+  G+   P   T   LL  L R    + A  +W  ++ +G   + 
Sbjct: 415 EGHTSEAFNLCDKMLQEGI--EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDE 472

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
             ++  +  LF   + + A +   D++         TF  ++ GL K+     A EI +K
Sbjct: 473 VGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDK 532

Query: 586 VRKMA-AERQITFK 598
           ++ +  +   IT++
Sbjct: 533 MKDLGCSPDGITYR 546


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 211/432 (48%), Gaps = 14/432 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           Y+     Y  LIK L    +      L   M+K    P  IT   +  LM+       + 
Sbjct: 162 YIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAIT---YGTLMKGLCRTGNIS 218

Query: 192 KAI----EVLDEMPKYGC--EPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLR 244
            A+    E+L++   YG   +P    +  ++DALCK+    EA  LF+EM+ +   P++ 
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +TSL++G+C  GK  EAK +  +M + G +P++V +N L+    + GK+ +A +LL+ M
Sbjct: 279 SYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVM 338

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            ++G  PN  +Y  LI+  C +  +  A   FV M   GCE DV+ YT LI+G+CK+ K+
Sbjct: 339 IQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKV 398

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +   ++ + M+Q G  P+  TY  ++    +  ++ +  +L G M+  G   D+  Y + 
Sbjct: 399 EEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIF 458

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +   CK G L EA+ ++N++++ ++    + F  ++ G    G L  A E F+++    L
Sbjct: 459 LNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEEL 518

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   +++   R  +V  A  ++  +   GC  +   +   I   F +  +++ 
Sbjct: 519 --QPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKV 576

Query: 545 CSYCLDMMDADV 556
                 M+  DV
Sbjct: 577 VELLHMMVQRDV 588



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 203/436 (46%), Gaps = 14/436 (3%)

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           L+  L  + + G   A+M  +  R   P ++T   +  L++       + KA  +   M 
Sbjct: 137 LLNCLCNVNRVGEGLAVMAGILRRGYIPDIVT---YTTLIKGLCMEHRISKAALLFTRMQ 193

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-------RFKPSLRHFTSLLYGWC 254
           K GC P+   +G L+  LC+  ++  A KL  EM          FKP +  ++ ++   C
Sbjct: 194 KLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALC 253

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K+ +  EA+ +  +MK  G  P ++ Y +L+ G+   GK  +A  L  EM  +G  PN  
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVV 313

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++ VLI  LC+  K+ EA      M + G   +++TY +LI GFC    ++   E+  SM
Sbjct: 314 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM 373

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
             +G  P+ + Y  ++  + K  ++EE ++L   M ++G  PDV  Y  ++    + G++
Sbjct: 374 PSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKV 433

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            +A  ++  M+   +      + + ++G    GCL EA E F ++    +          
Sbjct: 434 GDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI--KLDIECFN 491

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L++ L +A K+E A +++  +  +  + +V  + I IH     G V +A      M   
Sbjct: 492 CLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKN 551

Query: 555 DVMPQPDTFAKLMRGL 570
              P   T+A L+RG 
Sbjct: 552 GCTPDKITYATLIRGF 567



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 201/419 (47%), Gaps = 9/419 (2%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEM 235
           F  L+   A  +   +   + ++M   G  PD      LL+ LC  + V E  A +   +
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGIL 158

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R  + P +  +T+L+ G C E ++ +A  +  +M+  G  P+ + Y  L+ G  + G ++
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 296 DAFELLKEMRRKGC------DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
            A +L +EM            P   SY+++I ALC+  + +EA   F EM+  G    V+
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +YT+LI GFC   K +    + + M+ +G+ PN +T+  ++    K+ ++ E  +L+  M
Sbjct: 279 SYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVM 338

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G VP++  YN +I   C +G+L  A  ++  M +    P    + V+++G+     +
Sbjct: 339 IQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKV 398

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA + +  M+  G    P   T  ALL  L +  KV  AK ++  +   G   ++Y + 
Sbjct: 399 EEAMKLYNGMLQVG--KRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 456

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           I+++ L  NG + EA      +   ++    + F  L+ GL K    + A E+ EK+ +
Sbjct: 457 IFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQ 515



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 9/356 (2%)

Query: 222 NSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           N +  +A + F   M     P L  FT LL G  K     +  Y+  QM+ +G  PD   
Sbjct: 74  NITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCT 133

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
            N LL+    + ++ +   ++  + R+G  P+  +YT LI+ LC   ++ +A   F  M+
Sbjct: 134 LNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQ 193

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL------PNQLTYLHIMLAHE 394
           + GC  + +TY TL+ G C++  I    ++   M+    L      P  ++Y  I+ A  
Sbjct: 194 KLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALC 253

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K    +E  +L  EM+  G  P V +Y  +I   C  G+ +EA  ++NEM    + P   
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVV 313

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           +F V++     +G +IEA +  + M+ RG++  P   T  +L+        +  A++++ 
Sbjct: 314 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIV--PNLLTYNSLIEGFCLVGDLNSARELFV 371

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            + +KGCE +V  +T+ I+       V+EA      M+     P   T+  L+ GL
Sbjct: 372 SMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGL 427



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--I 179
           Y   +   K+P+       Y AL+  L +  K G    L   M+      I  ++++  I
Sbjct: 405 YNGMLQVGKRPDV----KTYGALLTGLFQGGKVGDAKKLFGVMKVYG---IPGDLYIYGI 457

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
            +        + +A+E+ +++  Y  + D   F CL+D LCK   ++ A +LF+++ +E 
Sbjct: 458 FLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE 517

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P +  +  +++ +C+ G++V+A  +  +M+  G  PD + Y  L+ G+ +  K+    
Sbjct: 518 LQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVV 577

Query: 299 ELLKEMRRKGCDPNAN 314
           ELL  M ++    + N
Sbjct: 578 ELLHMMVQRDVSLDVN 593



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 4/172 (2%)

Query: 429 CKLGELK--EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           CK G +   +A   ++ M  ++ +P   SF  ++ G        +    + +M   G+  
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGI-- 127

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +P   TL  LLN L    +V     V + I+ +G   ++  +T  I  L     + +A  
Sbjct: 128 SPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAAL 187

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK 598
               M      P   T+  LM+GL +  N  IA ++ +++   ++   I FK
Sbjct: 188 LFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFK 239


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 197/397 (49%), Gaps = 7/397 (1%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           +++    A  V  A+ +L+ M K G  PD      L++ LCK   ++EA +    M  + 
Sbjct: 380 VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKI 439

Query: 240 KPSLRH---FTSLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMT 295
                    + SLL   CK  K+ +A  +   M  +  F PD+V Y+ L+ G+ ++ ++ 
Sbjct: 440 SSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELG 499

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A +L K+M    C PN  +Y   +  L R  ++ +A   + EM  +GC  DV+TY+TLI
Sbjct: 500 RAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLI 559

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GF  +RK D+ +E+ ++MI RG  PN +TY  ++    K+ + +E  EL  +M + GC 
Sbjct: 560 HGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCD 619

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD   Y  ++   C +G++++AV V++EM +    P   ++  ++ GF   G   EA + 
Sbjct: 620 PDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQL 679

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI-VTKGCELNVYAWTIWIHS 534
           F+ MV R     P   +   +++ L +A++++ A +V+  +    GC  ++  +   I  
Sbjct: 680 FQVMVSRQ--CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFG 737

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           L     + EA     ++    + P P  F  L+  +K
Sbjct: 738 LCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIK 774



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 163/341 (47%), Gaps = 37/341 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +L+ SL K +K    +A+   M  E+        FV                      
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERS-------FV---------------------- 479

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
                 PD   +  L+D  CK   +  A KL+ +M +    P++  + + L G  ++G++
Sbjct: 480 ------PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRI 533

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+ V  +M  AG  PD++ Y+ L+ G++   K   A EL + M  +GC PNA +Y  L
Sbjct: 534 ADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCL 593

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+  K +EA+  F +M   GC+ D VTYTTL+ GFC   KI++  E+ D M+ +G 
Sbjct: 594 LHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH 653

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ + Y  ++    +  +  E  +L   M    C PD  ++N++I    K   L +AV 
Sbjct: 654 DPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVE 713

Query: 440 VWNEMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
           V+  ME     SP   ++  ++ G  G+  L EA + FKE+
Sbjct: 714 VFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 754



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 201/421 (47%), Gaps = 44/421 (10%)

Query: 192 KAIE---VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--F 246
           KAIE   +   M K GC+PD  ++  ++ A CK  ++ EA KLF EM    K  L +  +
Sbjct: 249 KAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAW 308

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDA---------------------------------- 272
           T+ L G CK GK+ +A      M+++                                  
Sbjct: 309 TAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGR 368

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
             +P     ++++    + G++  A  LL+ M ++G  P+  ++++LI  LC+ +K++EA
Sbjct: 369 NIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEA 428

Query: 333 NRAFVEMER--SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI-QRGILPNQLTYLHI 389
                 M+R  S   +   +Y +L++  CK++K+ + + I  +M+ +R  +P+ ++Y  +
Sbjct: 429 QEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSIL 488

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +    K +EL    +L  +M  + CVP+V+ YN  +    + G + +A  V+ EM AA  
Sbjct: 489 IDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGC 548

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           SP   ++  ++HGF       +A E F+ M+ RG    P   T   LL+ L +  K + A
Sbjct: 549 SPDVITYSTLIHGFSLARKHDQAHELFETMISRG--CRPNAVTYNCLLHGLCKESKPDEA 606

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            +++  +V +GC+ +   +T  ++   + G +++A     +M+     P    +  L++G
Sbjct: 607 HELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKG 666

Query: 570 L 570
            
Sbjct: 667 F 667



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 183/405 (45%), Gaps = 47/405 (11%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D F + CLLD L ++  +K+A ++F++M  +   P+   +  L+   C E    EA    
Sbjct: 128 DVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFF 187

Query: 267 VQMKDAGFEPDIVVYNN-----------------------------------LLSGYAQM 291
            +M D GF+P   +Y                                     LL  +   
Sbjct: 188 GEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQ 247

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVT 350
            K  +A +L + M + GC P+A  Y+ ++ A C++E ++EA + F+EM   S    + V 
Sbjct: 248 DKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVA 307

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEE-CVELM 406
           +T  +SG CKS KI++ +E   +M Q  +  +Q  Y   + +++   + ++ EE C+E+ 
Sbjct: 308 WTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIA 366

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
           G  R I   P     + VI+  CK G +  A+++   M      P   +  ++++     
Sbjct: 367 G--RNIQ--PSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKA 422

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL-NV 525
             + EA E+ + M  +    +    +  +LLNSL +A+KV  A  ++S +V++   + +V
Sbjct: 423 DKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDV 482

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +++I I        +  A      M+D + +P   T+   + GL
Sbjct: 483 VSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGL 527



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           +PN V     Y  L+  L K  K      L  +M  R   P  +T   +  L+  F +  
Sbjct: 584 RPNAV----TYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVT---YTTLLYGFCNVG 636

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +++A+EV DEM   G +PD   + CLL    +     EA +LF  M  R  KP      
Sbjct: 637 KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHN 696

Query: 248 SLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            ++ G  K  +L +A  V  +M +D G  PD+V YN+L+ G     ++++A ++ KE+ R
Sbjct: 697 IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 756

Query: 307 KGCDPNANSYTVLIQAL 323
               P+ +++ VL++A+
Sbjct: 757 LKLSPDPHAFNVLLEAI 773



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 132/316 (41%), Gaps = 40/316 (12%)

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           F+ D+  YN LL    +   +  A ++ ++M  +G  PN  +Y VL+Q+ C     +EA 
Sbjct: 125 FKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAV 184

Query: 334 RAFVEMERSGCEADVVTYT-----------------------------------TLISGF 358
           R F EM   G +     Y                                     L+  F
Sbjct: 185 RFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNF 244

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP-D 417
               K     ++  +M++ G  P+   Y +++LAH K E L+E  +L  EM      P +
Sbjct: 245 VIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLN 304

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
              +   +   CK G++++A      M+  SLS     + +++   +  G + +A E   
Sbjct: 305 NVAWTAFLSGLCKSGKIEQAFEACRTMQ-ESLSSSQPVYDMLIRLLIESGRIDKAEEACL 363

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           E+ GR +   P  GT  +++  L +A +V+ A  +   ++ +G   ++   ++ I+ L  
Sbjct: 364 EIAGRNI--QPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCK 421

Query: 538 NGHVKEACSYCLDMMD 553
              ++EA  + L  MD
Sbjct: 422 ADKIQEAQEF-LQGMD 436


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 221/468 (47%), Gaps = 16/468 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL-----ITTEVFVILMRRFASAR 188
           Y HS    R ++  L  +R+     +L++ + +    L         V   L+   A   
Sbjct: 81  YAHS----RRVLSRLVALRRPHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRG 136

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
           ++  A+  +  + +    P+      +L  L ++ S +   +LF+++     P++  F  
Sbjct: 137 LLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLP---APNVFTFNI 193

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CKEG+L EA+ +  +MK+ G  PD+V +N+L+ GY + G++ +  +L++EMRR G
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  +  +Y  LI   C+  +ME A   F  M+R G  A+VVT++T +  FCK   +    
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAM 313

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++   M  RG+  N+ TY  ++    K   L++ + L+ EM + G   +V  Y V++   
Sbjct: 314 KLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSA 487
           CK  ++ EA +V   ME A +      +  ++HG        +A     EM  +GL L  
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
             YG   AL+  L    K++ AK + + +   G E N   +T  + + F +G V EA + 
Sbjct: 434 SLYG---ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
              ++D+   P   T+  L+ GL K  +   A     K+R +  +  +
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 198/410 (48%), Gaps = 10/410 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  +    +     M++E     ++T   FV     F    +V++A+++  
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFV---DAFCKEGLVREAMKLFA 317

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEG 257
           +M   G   +EF + CL+D  CK   + +A  L DEM  +  P ++  +T L+ G CKE 
Sbjct: 318 QMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKER 377

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA+ VL  M+ AG   + ++Y  L+ G+        A  LL EM+ KG + + + Y 
Sbjct: 378 KVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG 437

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LIQ LC + K++EA     +M+ SG E + + YTT++    KS K+     +L  ++  
Sbjct: 438 ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDS 497

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +TY  ++    K   ++E +    +MR +G  P+V  Y  ++   CK G L EA
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEA 557

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKAL 496
           V ++NEM    +S     +  ++ G+L QG L +A     +M+  GL L    Y      
Sbjct: 558 VQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCY---TCF 614

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           ++       +  A++V+S ++  G   +   +   I      G+++EA S
Sbjct: 615 ISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAIS 664



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 220/486 (45%), Gaps = 41/486 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +  +I  L K  +     +L   M KE   L     F  L+  +     + +  ++++EM
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRM-KEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            + GC+ D   +  L++  CK   ++ A   F  M RE    ++  F++ +  +CKEG +
Sbjct: 250 RRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLV 309

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  QM+  G   +   Y  L+ G  + G++ DA  LL EM R+G   N  +YTVL
Sbjct: 310 REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVL 369

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTT-------------------------- 353
           +  LC+  K+ EA      ME++G  A+ + YTT                          
Sbjct: 370 VDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL 429

Query: 354 ---------LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
                    LI G C   K+D    +L  M + G+ PN + Y  +M A  K  ++ E + 
Sbjct: 430 ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           ++ ++   G  P+V  Y  +I   CK G + EA++ +N+M    L P   ++  +V G  
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLC 549

Query: 465 GQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             GCL EA + F EMV +G+ L    Y    ALL+  L+   +  A  + + ++  G +L
Sbjct: 550 KNGCLNEAVQLFNEMVHKGMSLDKVVY---TALLDGYLKQGNLHDAFALKAKMIDSGLQL 606

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           +++ +T +I    +   + EA     +M+   + P    +  L+   +KL N + A  + 
Sbjct: 607 DLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQ 666

Query: 584 EKVRKM 589
           +++ ++
Sbjct: 667 DEMERV 672



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 210/454 (46%), Gaps = 45/454 (9%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P   T    ++ + R  S R+V++  E   ++P     P+ F F  ++D LCK   + EA
Sbjct: 155 PNTRTCNHILLRLARDRSGRLVRRLFE---QLPA----PNVFTFNIVIDFLCKEGELAEA 207

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
             LF  M+E    P +  F SL+ G+ K G+L E + ++ +M+ +G + D+V YN L++ 
Sbjct: 208 RSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINC 267

Query: 288 YAQMGKM-------------------------TDAF----------ELLKEMRRKGCDPN 312
           + + G+M                          DAF          +L  +MR +G   N
Sbjct: 268 FCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN 327

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT LI   C+  ++++A     EM R G   +VVTYT L+ G CK RK+    ++L 
Sbjct: 328 EFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M + G+  N+L Y  ++  H   +  E+ + L+ EM+  G   D+S Y  +I+  C + 
Sbjct: 388 MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVH 447

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +L EA ++  +M+ + L P    +  M+      G + EA    ++++  G    P   T
Sbjct: 448 KLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGF--QPNVIT 505

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             AL++ L +A  ++ A   ++ +   G + NV A+T  +  L  NG + EA     +M+
Sbjct: 506 YCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMV 565

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
              +      +  L+ G  K  N   A  +  K+
Sbjct: 566 HKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 5/317 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDE 199
           Y  L+  L K RK      ++  M  EK  +   E+ +  L+      +  +KA+ +L E
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMM--EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G E D  ++G L+  LC    + EA  L  +M E   +P+   +T+++    K GK
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +L ++ D+GF+P+++ Y  L+ G  + G + +A     +MR  G DPN  +YT 
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+  LC+   + EA + F EM   G   D V YT L+ G+ K   +   + +   MI  G
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           +  +   Y   +        + E  E+  EM   G  PD + YN +I    KLG L+EA+
Sbjct: 604 LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 439 NVWNEMEAASLSPGTDS 455
           ++ +EME   L   TDS
Sbjct: 664 SLQDEMERV-LPSCTDS 679


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 215/457 (47%), Gaps = 43/457 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L++     A  +L EEM+ +  +P ++T   +  L+  +    M+  A+ V +
Sbjct: 254 YNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVT---YNSLIDGYGKVGMLTGAVSVFE 310

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   GCEPD   +  L++  CK   + +A +    M++R  +P++  +++L+  +CK G
Sbjct: 311 EMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAG 370

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L+EA    V M   G +P+   Y +L+    ++G + +AF+L  EM++ G + N  +YT
Sbjct: 371 MLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYT 430

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC   +M EA   F  + ++G   +   YT+L  G+ K++ +++  +IL+ M ++
Sbjct: 431 ALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKK 490

Query: 378 GILP-----------------------------------NQLTYLHIMLAHEKKEELEEC 402
            + P                                   N   Y  ++ A+ K  +  E 
Sbjct: 491 NLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEA 550

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           V L+ EM+ +G    V  Y V+I   CK+G +++AV  ++ M    L P    +  ++ G
Sbjct: 551 VNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDG 610

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                CL EA   F EM+ +G+  +P      +L++  ++      A  + + +V  G E
Sbjct: 611 LCKNDCLEEAKNLFNEMLDKGI--SPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGME 668

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L++ A+T  I      G V+ A S   +M+   ++P 
Sbjct: 669 LDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPD 705



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 191/399 (47%), Gaps = 3/399 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF  L        M+++A +   +M K+   P       LL  L K+S    A   F +M
Sbjct: 183 VFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDM 242

Query: 236 R-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                 PS+  +  ++    +EG L  A+ +  +MK  G  PDIV YN+L+ GY ++G +
Sbjct: 243 VVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGML 302

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           T A  + +EM+  GC+P+  +Y  LI   C+ E++ +A      M++ G + +VVTY+TL
Sbjct: 303 TGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTL 362

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I  FCK+  +    +    MI+ G+ PN+ TY  ++ A+ K  +L E  +L  EM++ G 
Sbjct: 363 IDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGV 422

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             ++  Y  ++   C+ G ++EA  ++  +  A  +     +  + HG++    + +A +
Sbjct: 423 NLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMD 482

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM  + L   P        +  L R  ++E +  V   ++  G   N Y +T  I +
Sbjct: 483 ILEEMNKKNL--KPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDA 540

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            F  G   EA +   +M D  +     T+  L+ GL K+
Sbjct: 541 YFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKI 579



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 222/481 (46%), Gaps = 32/481 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QPN       Y +LI +  K+      + L  EM++    L       +L       RM 
Sbjct: 388 QPNEF----TYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRM- 442

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++A E+   + K G   ++ ++  L     K   +++A  + +EM ++  KP L  + + 
Sbjct: 443 REAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTK 502

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++G C++ ++ ++  V+ +M D G   +  +Y  L+  Y ++GK T+A  LL+EM+  G 
Sbjct: 503 IWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGI 562

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
                +Y VLI  LC++  +++A R F  M R+G + +++ YT LI G CK+  ++    
Sbjct: 563 KITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKN 622

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + + M+ +GI P++L Y  ++  + K     E + L   M +IG   D+  Y  +I    
Sbjct: 623 LFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFS 682

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           + G+++ A ++ +EM    + P     + ++  +   G + EA     +M  RGL+S   
Sbjct: 683 RYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTI 742

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL----NVYAWTI--WIHS--LFSN-GH 540
             T+ + L ++ +  K+        C    G +     N+Y   +  + HS   FS  GH
Sbjct: 743 DITVPSCLTAVTKLHKL--------CASQSGTDFHRTANLYLADVEEFSHSGMPFSPLGH 794

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN----RQIAAEITEKVRKMAAERQIT 596
            +         ++A+ +  PD    L  G + L +    R +  EI E  + + + R I 
Sbjct: 795 AR-----LFTCLEAEALYAPDMCTSLHAGRRLLLDDMDPRGLELEICESFQWVESFRLIL 849

Query: 597 F 597
           F
Sbjct: 850 F 850



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 163/392 (41%), Gaps = 41/392 (10%)

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R   +P    F +L       G L EA+    +M      P +   N LL   ++  K  
Sbjct: 174 RNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGG 233

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A    K+M   G  P+  +Y ++I  L R   +E A   F EM+  G   D+VTY +LI
Sbjct: 234 LALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLI 293

Query: 356 SG-----------------------------------FCKSRKIDRCYEILDSMIQRGIL 380
            G                                   FCK  +I + +E L  M QRG+ 
Sbjct: 294 DGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQ 353

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN +TY  ++ A  K   L E  +   +M ++G  P+   Y  +I   CK+G+L EA  +
Sbjct: 354 PNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKL 413

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            +EM+ A ++    ++  ++ G    G + EA E F  ++  G     Q  T  +L +  
Sbjct: 414 ESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYT--SLFHGY 471

Query: 501 LRAQKVEMAKDVWSCIVTKGC--ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           ++A+ +E A D+   +  K    +L +Y   IW   L     ++++ +   +MMD  +  
Sbjct: 472 IKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIW--GLCRQNEIEDSMAVIREMMDCGLTA 529

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
               +  L+    K+     A  + ++++ + 
Sbjct: 530 NSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLG 561



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 3/275 (1%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D F++L   R   C P    +  L   L  +  +EEA + F +M +      V +   L+
Sbjct: 165 DFFDMLWSTRNV-CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELL 223

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
               KS K          M+  G+ P+  TY  ++    ++ +LE    L  EM+  G  
Sbjct: 224 HRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLR 283

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD+  YN +I    K+G L  AV+V+ EM+ A   P   ++  +++ F     + +A EY
Sbjct: 284 PDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEY 343

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
              M  RGL   P   T   L+++  +A  +  A   +  ++  G + N + +T  I + 
Sbjct: 344 LHGMKQRGL--QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDAN 401

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              G + EA     +M  A V     T+  L+ GL
Sbjct: 402 CKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGL 436


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 209/443 (47%), Gaps = 45/443 (10%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW-ASKQPNYVHSYDVYRALIKSLSKMRK 153
           L   GV+  P +    I     AG L     +  A+  P+       Y AL+ + S+  +
Sbjct: 132 LHGEGVLHHPRVLATAIRVMARAGRLAEASALLDAAPGPDA----GAYTALVSAFSRAGR 187

Query: 154 FGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211
           F    A+   M     +P ++T  V + +  + A     K+ +E++  M ++G  PD + 
Sbjct: 188 FRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW--KEVVELVASMKEHGVAPDRYT 245

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L+    + +  KEAA++FDEM                                  K 
Sbjct: 246 YNTLISCCRRRALYKEAAQVFDEM----------------------------------KA 271

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
           +GFEPD V +N+LL  Y +  +  +A E+++EM R GC P+  +Y  LI +  +   +E+
Sbjct: 272 SGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQ 331

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A     EME  G + DVVTYTTLISG  ++ KID      D M++ G  PN  TY  ++ 
Sbjct: 332 AVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIK 391

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            H  + +  E + +  E+R  G VPD+  +N ++ +  + G   E   V+ EM+ A   P
Sbjct: 392 MHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIP 451

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
             D++V ++  +   G    A + +K M+  G+   P   T  A+L++L R  + E A+ 
Sbjct: 452 ERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIY--PDVSTYNAVLSALARGGRWEQAEK 509

Query: 512 VWSCIVTKGCELNVYAWTIWIHS 534
           +++ +  + C+ + Y+++  +H+
Sbjct: 510 LFAEMEERDCKPDEYSYSSLLHA 532



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 164/346 (47%), Gaps = 11/346 (3%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMR-KFGAVWALMEEMRKE--KPQLITTEVFV 178
           +R  + +  QP  V     Y  ++   SKM   +  V  L+  M++    P   T    +
Sbjct: 195 FRRMVDSGVQPAIV----TYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLI 250

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
              RR A   + K+A +V DEM   G EPD+  F  LLD   K     EA ++  EM R 
Sbjct: 251 SCCRRRA---LYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERV 307

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              PS+  + SL+  + K+G L +A  +  +M+  G +PD+V Y  L+SG  + GK+  A
Sbjct: 308 GCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAA 367

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
                EM R GC PN  +Y  LI+      K  E    F E+  +G   D+VT+ TL++ 
Sbjct: 368 IVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAV 427

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           F ++        +   M + G +P + TY+ ++ ++ +    +  +++   M + G  PD
Sbjct: 428 FGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPD 487

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           VS YN V+    + G  ++A  ++ EME     P   S+  ++H +
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 533



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 181/408 (44%), Gaps = 43/408 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +  K  A     +EM +   KP L T   +  L++         + + V D
Sbjct: 351 YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCT---YNALIKMHGVRGKFPEMMAVFD 407

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           E+   G  PD   +  LL    +N    E + +F EM++  + P    + SL+  + + G
Sbjct: 408 ELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +  +M +AG  PD+  YN +LS  A+ G+   A +L  EM  + C P+  SY+
Sbjct: 468 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 318 VLIQALC---RMEKME--------------------------------EANRAFVEMERS 342
            L+ A     R++KM+                                EA +AF+E+ + 
Sbjct: 528 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 587

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C  D+     ++S + K+R + +  +IL  M +  I  +  TY  +M  + +  + E+C
Sbjct: 588 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 647

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             ++ E++  G  PD  +YN VI    + G++KEA  +++EM+ + L P   ++ + V  
Sbjct: 648 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           ++      EA E  + MV +G    P   T  +++    R  K+  AK
Sbjct: 708 YVSNSMFEEAIELVRYMVTQG--CKPNERTYNSIVEGYCRNGKLTDAK 753



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 203/477 (42%), Gaps = 78/477 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + +L+    K R+      +++EM +    P ++T   +  L+  +    ++++A+ +  
Sbjct: 281 FNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVT---YNSLISSYVKDGLLEQAVALKQ 337

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +PD   +  L+  L +   +  A   +DEM R   KP+L  + +L+      G
Sbjct: 338 EMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 397

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--------- 308
           K  E   V  +++ AGF PDIV +N LL+ + Q G  ++   + KEM++ G         
Sbjct: 398 KFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 457

Query: 309 --------CD------------------PNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                   C                   P+ ++Y  ++ AL R  + E+A + F EME  
Sbjct: 458 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER 517

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C+ D  +Y++L+  +  ++++D+   + D +    I P+      ++L + K   L E 
Sbjct: 518 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEA 577

Query: 403 VELMGEMRKIGCVPDV-----------------------------------SNYNVVIRL 427
            +   E+R+  C  D+                                   + YN ++ +
Sbjct: 578 EKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHM 637

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             +LG+ ++  N+  E++++ + P   S+  +++ +  +G + EA   F EM   GL   
Sbjct: 638 YSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGL--K 695

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           P   T    + S +     E A ++   +VT+GC+ N   +   +     NG + +A
Sbjct: 696 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDA 752


>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 182/381 (47%), Gaps = 10/381 (2%)

Query: 73  DVEKIFRILKK----FHSRLPKLELALQHSGV----VLRPGLTERVINRCGDAGNLGYRY 124
           D EK+  ILK+    F + L   EL L+ SGV    VL+  L  + +        LGY++
Sbjct: 78  DAEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKLGYKF 137

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           ++W+ +  NY H+ + Y  ++K  ++  +F A+W +++EM  EK   +T   F+IL+   
Sbjct: 138 FIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEM-TEKGYPVTARTFMILICTC 196

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSL 243
             A + K+ +E   +   +   P +  +  +L  L      K    ++D+M  +   P +
Sbjct: 197 GEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDI 256

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             +  LL+  CK GKL +   +L +M   GF PD   YN LL    +  K   A  LL  
Sbjct: 257 LTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNH 316

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR  G  PN   +T LI  L R   ++     F E+  +GC  DVV YT +I+ F ++ +
Sbjct: 317 MREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQ 376

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            ++     D MI +G LPN  TY  ++       + +E   ++ EM   GC P+   Y+ 
Sbjct: 377 HEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYST 436

Query: 424 VIRLACKLGELKEAVNVWNEM 444
           ++      G+L EA  V  +M
Sbjct: 437 LVSYLRNAGKLGEAHKVIKQM 457



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 28/291 (9%)

Query: 105 GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           GL +RV+ R   +    +R          Y HSY+   A++  L  ++++  +  + ++M
Sbjct: 200 GLAKRVVERFIKSKTFNFR---------PYKHSYN---AILHGLVIVKQYKLIGWVYDQM 247

Query: 165 --RKEKPQLITTEVFVILMRRFASARMVK--KAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
                 P ++T  V +     F+S ++ K  +   +LDEM + G  PD   +  LL  L 
Sbjct: 248 LLDDHSPDILTYNVLL-----FSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLG 302

Query: 221 KNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           K      A  L + MRE  F P++ HFT+L+ G  + G L   KY   ++ + G  PD+V
Sbjct: 303 KGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVV 362

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  +++ + + G+   A     EM  KG  PN  +Y  +I+  C + K +EA     EM
Sbjct: 363 CYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEM 422

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           E  GC  + + Y+TL+S    + K+   ++++  M++ G       Y H+M
Sbjct: 423 ESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKQMVENG------QYAHLM 467



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 131/300 (43%), Gaps = 4/300 (1%)

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           H    ++  C+E K +    VL +M + G+      +  L+    + G      E   + 
Sbjct: 155 HIIMKIFAECEEFKAMWR--VLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKS 212

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +     P  +SY  ++  L  +++ +     + +M       D++TY  L+   CK  K+
Sbjct: 213 KTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKL 272

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           D+ + +LD M ++G  P+  TY  ++    K ++    + L+  MR++G  P+V ++  +
Sbjct: 273 DQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTL 332

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I    + G L      ++E+      P    + VM+  F   G   +A  +F EM+ +G 
Sbjct: 333 INGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQ 392

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  P   T  +++       K + A  + S + ++GC  N   ++  +  L + G + EA
Sbjct: 393 L--PNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEA 450



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 5/326 (1%)

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y+ ++  +A+  +    + +L EM  KG    A ++ +LI         +     F++ +
Sbjct: 154 YHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSK 213

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
                    +Y  ++ G    ++      + D M+     P+ LTY  ++ +  K  +L+
Sbjct: 214 TFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLD 273

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +   L+ EM + G  PD   YN+++ +  K  +   A+N+ N M      P    F  ++
Sbjct: 274 QFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLI 333

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           +G    G L +AC+YF + +G      P       ++ S   A + E A+  +  ++ KG
Sbjct: 334 NGLSRAGNL-DACKYFFDELGNNG-CIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG 391

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
              NV+ +   I      G  KEA S   +M      P    ++ L+  L+   N     
Sbjct: 392 QLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLR---NAGKLG 448

Query: 581 EITEKVRKMAAERQITFKMYKRRGER 606
           E  + +++M    Q    M K +G R
Sbjct: 449 EAHKVIKQMVENGQYAHLMTKFKGYR 474



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 10/262 (3%)

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
            NSY ++++     E+ +   R   EM   G      T+  LI    ++    R  E   
Sbjct: 151 VNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFI 210

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
                   P + +Y  I+      ++ +    +  +M      PD+  YNV++  +CKLG
Sbjct: 211 KSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLG 270

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG----CLIEACEYFKEMVGRGLLSAP 488
           +L +   + +EM     SP   ++ ++++  LG+G      +    + +E VG G    P
Sbjct: 271 KLDQFHRLLDEMARKGFSPDFHTYNILLY-VLGKGDKPLAALNLLNHMRE-VGFG----P 324

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                  L+N L RA  ++  K  +  +   GC  +V  +T+ I S    G  ++A ++ 
Sbjct: 325 NVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFF 384

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
            +M+    +P   T+  ++RG 
Sbjct: 385 DEMIMKGQLPNVFTYNSMIRGF 406


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 210/450 (46%), Gaps = 9/450 (2%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVIL 180
           YR  +    +P  V     Y  L+ S  K  +      L++EM  +    +  +V + ++
Sbjct: 231 YREMLQLEIEPTIV----TYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVV 286

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERF 239
           +   A    ++ A +++D M +   +   F +  L+ AL +   V++   L  EM  E  
Sbjct: 287 ISFLAREGHLENAAKLVDSM-RLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGI 345

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P+L  + ++++G  K  ++  A+    +M+  G  PD++ YN++L+GY + G + +A  
Sbjct: 346 MPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALW 405

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           LL ++RR G  P   +Y  LI   CR+  +EEA R   EM   GC  DV TYT L++G  
Sbjct: 406 LLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSH 465

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K R +    E  D M+ +G+ P+   Y   + A     +  +  +L   M   G  PD  
Sbjct: 466 KVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTV 525

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YNV+I   CK G LK+A ++  +M +  L P   ++  ++H    +G L EA +    M
Sbjct: 526 TYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGM 585

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V  GL   P   T   L+++  R   +  A   +  ++  G E N   + + IH+L   G
Sbjct: 586 VSDGL--QPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTG 643

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
               A  +  +M++  + P   T+  L+ G
Sbjct: 644 RTLLAYHHFHEMLERGLAPNKYTYTLLIDG 673



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 169/361 (46%), Gaps = 8/361 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y A+I  L K  +  A      EMR     P LIT   +  ++  +  A  +K+A+ +L
Sbjct: 351 TYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLIT---YNSMLNGYCKAGNLKEALWLL 407

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            ++ + G  P    +  L+D  C+   ++EA +L +EM E+   P +  +T L+ G  K 
Sbjct: 408 GDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKV 467

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             L  A+    +M   G +PD   YN  +     +G    AF+L + M  KG  P+  +Y
Sbjct: 468 RNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTY 527

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            V+I  LC+   +++A    ++M   G + D +TYT LI   C+   +    ++L+ M+ 
Sbjct: 528 NVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVS 587

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ P+ +TY  ++    ++  L        +M  +G  P+   YNV+I   C+ G    
Sbjct: 588 DGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLL 647

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A + ++EM    L+P   ++ +++ G   +G   +A   + EM   G+   P Y T  AL
Sbjct: 648 AYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGI--PPDYCTHNAL 705

Query: 497 L 497
            
Sbjct: 706 F 706



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 173/362 (47%), Gaps = 7/362 (1%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK--GCDPNANSYTV 318
           + + V  +M     EP IV YN LL  + + G+  +A  LLKEM  +  GC  N  +Y V
Sbjct: 226 DVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNV 285

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I  L R   +E A +  V+  R   +A   TY  LI+   +   + +   +   M   G
Sbjct: 286 VISFLAREGHLENAAK-LVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEG 344

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I+P  +TY  I+    K E++E       EMR +G +PD+  YN ++   CK G LKEA+
Sbjct: 345 IMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEAL 404

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  ++  A L+P   ++  ++ G+   G L EA    +EMV +G    P   T   L+N
Sbjct: 405 WLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCF--PDVCTYTILMN 462

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              + + + MA++ +  +++KG + + +A+   I +    G   +A      MM   + P
Sbjct: 463 GSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYP 522

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFK-MYKRRGERDLKEKAKKQV 616
              T+  ++ GL K  N + A ++  K+     +   IT+  +     ER L  +A+K +
Sbjct: 523 DTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLL 582

Query: 617 DG 618
           +G
Sbjct: 583 NG 584



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 15/318 (4%)

Query: 117 AGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLIT 173
           AGNL    ++    ++     +   Y  LI    ++        L EEM ++   P + T
Sbjct: 397 AGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCT 456

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
              + ILM      R +  A E  DEM   G +PD F +      +C    + +  K F 
Sbjct: 457 ---YTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYN---TRICAELILGDTHKAF- 509

Query: 234 EMRE-----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           ++RE        P    +  ++ G CK G L +AK + ++M   G +PD + Y  L+  +
Sbjct: 510 QLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAH 569

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            + G +++A +LL  M   G  P+  +YT+LI   CR   +  A   F +M   G E + 
Sbjct: 570 CERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNE 629

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           +TY  LI   C++ +    Y     M++RG+ PN+ TY  ++  + ++    + + L  E
Sbjct: 630 ITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFE 689

Query: 409 MRKIGCVPDVSNYNVVIR 426
           M + G  PD   +N + +
Sbjct: 690 MHQNGIPPDYCTHNALFK 707



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 5/281 (1%)

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+      +++ L    + ++    + EM +   E  +VTY TL+  F K  + D  
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEA 262

Query: 368 YEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             +L  M  +  G L N +TY  ++    ++  LE   +L+  MR +        YN +I
Sbjct: 263 SMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMR-LSKKASSFTYNPLI 321

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               + G +++   +  EME   + P   ++  ++HG L    +  A   F EM   GLL
Sbjct: 322 TALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLL 381

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  ++LN   +A  ++ A  +   +   G    V  +   I      G ++EA 
Sbjct: 382 --PDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEAR 439

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               +M++    P   T+  LM G  K+ N  +A E  +++
Sbjct: 440 RLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEM 480


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 212/447 (47%), Gaps = 50/447 (11%)

Query: 118 GNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF 177
            +LGY        +  +VH Y  Y A+I+      K     ++  EM K   Q +  +V+
Sbjct: 276 SDLGYAVLQDYRTRNAHVHKY-AYTAVIRGFCNETKLDEAESVFLEMEK---QGLVPDVY 331

Query: 178 VI--LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL------------------- 216
           V   L+  + ++R   KA+ V   M   G + +  +F C+L                   
Sbjct: 332 VYCALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEF 391

Query: 217 ----------------DALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
                           DALCK   V +A  + DE++  +    ++H+T+L+ G+  +GK 
Sbjct: 392 KESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKP 451

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +EA+ +  +M++ GF+PD+V YN L +G+ +     +A +LL  M  +G +PN+ ++ ++
Sbjct: 452 IEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKII 511

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE------ILDS 373
           I+ LC   K+EEA   F  ++    E  V  YT L++G+C++  I++ +E      +L +
Sbjct: 512 IEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRT 571

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M++  + P+++ Y  I  A      +E    L       G  PD   Y ++I   CK   
Sbjct: 572 MLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNC 631

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L EA  ++ +M+   ++P   ++ +M++G+    CL EA E FK+M  RG+   P     
Sbjct: 632 LPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGI--KPDVIAY 689

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKG 520
             ++  LL +   E+A  +++ ++  G
Sbjct: 690 TVIIKGLLNSGHTEIAFQLYNEMIDMG 716



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 197/455 (43%), Gaps = 35/455 (7%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKM---RKFGAVWALMEEMRKEKPQLITTE 175
           +L Y Y+     Q  + H+   Y ++I+ L      RK  +++  + +  K+ P      
Sbjct: 76  SLAYSYFTQLKNQHGFSHNIQTYTSIIRILCYYNLDRKLDSLFLDIIDHSKQDPCFEINV 135

Query: 176 VFVIL--------------------MRRFASARMVKKAIEVLDEMPK-YGCEPDEFVFGC 214
           +F  L                    ++   S  M  +AI+ L +  K     P+   F  
Sbjct: 136 LFDSLFEGVNDVNEDHYLFNAFNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILSFNF 195

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY-----GWCKEGKLVEAKYVLVQM 269
           L++ L K+  V  A  LF     RFK     F    Y       CK+G       V  +M
Sbjct: 196 LINRLVKHDEVDMALCLF----VRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEM 251

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           K+AG + D   Y   + G  +  +    + +L++ R +    +  +YT +I+  C   K+
Sbjct: 252 KEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYTAVIRGFCNETKL 311

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           +EA   F+EME+ G   DV  Y  L+ G+C SR  D+   +  SMI RGI  N + +  I
Sbjct: 312 DEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCI 371

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +   ++     E V++  E ++ G   D   YN++    CKLG++ +AV + +E+++  L
Sbjct: 372 LHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQL 431

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
                 +  +++G+  QG  IEA   FKEM  RG    P       L     R +    A
Sbjct: 432 DVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGF--KPDVVAYNVLAAGFFRNRTDFEA 489

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            D+ + + ++G E N     I I  L S G V+EA
Sbjct: 490 MDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEA 524



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 150/319 (47%), Gaps = 8/319 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L  +L K+ K      +++E++  +  +       ++   F   + ++ A  +  EM
Sbjct: 403 YNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIE-AQSLFKEM 461

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + G +PD   +  L     +N +  EA  L + M  +  +P+      ++ G C  GK+
Sbjct: 462 EERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKV 521

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG------KMTDAFELLKEMRRKGCDPNA 313
            EA+     +K    E  + +Y  L++GY +        ++ +AF LL+ M      P+ 
Sbjct: 522 EEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSK 581

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
             Y+ +  ALC    ME A+  F     +G   D VTYT +I+G+CK+  +   +E+   
Sbjct: 582 VMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKD 641

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M +RGI P+ +TY  ++  + K   L E  EL  +M++ G  PDV  Y V+I+     G 
Sbjct: 642 MKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGH 701

Query: 434 LKEAVNVWNEMEAASLSPG 452
            + A  ++NEM    ++PG
Sbjct: 702 TEIAFQLYNEMIDMGMTPG 720


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 216/469 (46%), Gaps = 40/469 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL KM  F    +  ++M  +  +P++ T   F IL+  F+    +  A  ++ 
Sbjct: 56  FNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFT---FNILINCFSHLCQLNFAFSMVA 112

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           ++ K G +PD      LL  LC N  VKEA    D  +R+RF      + +L+ G CK G
Sbjct: 113 KILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSG 172

Query: 258 KLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           +   A  +L +++      PD+++Y  ++  + +   + DA++L  EM  K   PN  ++
Sbjct: 173 ETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTF 232

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI   C + +++EA     EM  +    +V T+  LI G CK  ++ +   +L  MI+
Sbjct: 233 NSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIK 292

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ PN +TY  +M  +   +E+ +   +   +   G  P+V +Y+V+I   CK   + E
Sbjct: 293 QGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDE 352

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG----------LLS 486
           AV ++ EM   +++P T ++  ++ G    G + +  +   E+  RG          LL+
Sbjct: 353 AVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLN 412

Query: 487 A-----------------------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                                   P   T   L++ L +  +++ A+ ++  ++ KG  L
Sbjct: 413 GLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPL 472

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           N+  +T+ I+ L   G   EA S    M D   MP   T+  L+  L K
Sbjct: 473 NIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFK 521



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 184/369 (49%), Gaps = 9/369 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEV--FVILMRRFASARMVKKAIEVL 197
           Y  LI  L K    G   A ++ +RK E   L+  +V  +  ++  F   ++V  A ++ 
Sbjct: 161 YGTLINGLCKS---GETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLY 217

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
            EM      P+   F  L+   C    +KEA  L +EM      P++  F  L+ G CKE
Sbjct: 218 SEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKE 277

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ +A  VL  M   G EP++V Y +L+ GY  + ++  A  +   +  +G  PN +SY
Sbjct: 278 GEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSY 337

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           +V+I  LC+ + ++EA + F EM       + VTY++LI G CKS +I   ++++D +  
Sbjct: 338 SVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINN 397

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           RG   N +TY  ++    K  ++++ + L+ +M+  G  PD+S Y  ++   CK G LK+
Sbjct: 398 RGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKD 457

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++ ++           + VM++G   +G   EA     +M   G +  P   T + L
Sbjct: 458 AQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCM--PDAVTYETL 515

Query: 497 LNSLLRAQK 505
           +++L +  K
Sbjct: 516 ISALFKNNK 524



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 173/346 (50%), Gaps = 6/346 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y A+I S  K +     + L  EM  +K  P ++T   F  L+  F     +K+A+ +L
Sbjct: 196 MYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVT---FNSLIYGFCIVGQLKEAVGLL 252

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           +EM      P+ + F  L+D LCK   VK+A  +   M ++  +P++  +TSL+ G+   
Sbjct: 253 NEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLV 312

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +AK+V   +   G  P++  Y+ +++G  +   + +A +L KEM  K   PN  +Y
Sbjct: 313 KEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTY 372

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI  LC+  ++ +      E+   G  A+++TY +L++G CK+ ++D+   +L  M  
Sbjct: 373 SSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKD 432

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI P+  TY  ++    K   L++   +  ++   G   ++  Y V+I   CK G   E
Sbjct: 433 EGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDE 492

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           A+++ ++ME     P   ++  ++          +A +  +EM+ R
Sbjct: 493 ALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIAR 538



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 167/335 (49%), Gaps = 7/335 (2%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P +  F  +L    K      A     QM+  G +P++  +N L++ ++ + ++  AF +
Sbjct: 51  PPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSM 110

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           + ++ + G  P+  +   L++ LC   K++EA      + R     D V+Y TLI+G CK
Sbjct: 111 VAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCK 170

Query: 361 SRKIDRCYEILDSMIQRGIL---PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           S +     ++L  +   G+L   P+ + Y  I+ +  K + + +  +L  EM      P+
Sbjct: 171 SGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPN 228

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +N +I   C +G+LKEAV + NEM   +++P   +F +++ G   +G + +A     
Sbjct: 229 VVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLS 288

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            M+ +G+   P   T  +L++     ++V  AK V++ I  +G   NV+++++ I+ L  
Sbjct: 289 VMIKQGV--EPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           N  V EA     +M   ++ P   T++ L+ GL K
Sbjct: 347 NKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCK 381



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 174/403 (43%), Gaps = 39/403 (9%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           P  F F  +L +L K +  K A     +M  +  +P +  F  L+  +    +L  A  +
Sbjct: 51  PPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSM 110

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           + ++   G++PD V  N LL G    GK+ +A      + RK    +  SY  LI  LC+
Sbjct: 111 VAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCK 170

Query: 326 MEKMEEANRAFVEME-RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
             +   A +   ++E       DV+ YT +I  FCK + +   Y++   MI + I PN +
Sbjct: 171 SGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVV 230

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV------ 438
           T+  ++       +L+E V L+ EM      P+V  +N++I   CK GE+K+A       
Sbjct: 231 TFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVM 290

Query: 439 -----------------------------NVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
                                        +V+N +    ++P   S+ VM++G      +
Sbjct: 291 IKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMV 350

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA + FKEM  + +   P   T  +L++ L ++ ++    D+   I  +G   N+  + 
Sbjct: 351 DEAVKLFKEMHLKNM--TPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYN 408

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             ++ L  N  V +A +    M D  + P   T+  L+ GL K
Sbjct: 409 SLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCK 451



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 13/217 (5%)

Query: 97  HSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGA 156
           HS  V+  GL +   N+  D     ++     +  PN V     Y +LI  L K  +   
Sbjct: 335 HSYSVMINGLCK---NKMVDEAVKLFKEMHLKNMTPNTV----TYSSLIDGLCKSGRISD 387

Query: 157 VWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           VW L++E+  R +   +IT   +  L+        V KAI +L +M   G +PD   +  
Sbjct: 388 VWDLIDEINNRGQPANIIT---YNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTT 444

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           L+D LCKN  +K+A +++ ++  +  P ++R +T ++ G CKEG   EA  +L QM+D G
Sbjct: 445 LVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNG 504

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
             PD V Y  L+S   +  K   A +LL+EM  +  D
Sbjct: 505 CMPDAVTYETLISALFKNNKNGKAVKLLREMIARESD 541


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 218/476 (45%), Gaps = 20/476 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMR-------KFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
            PN +      RA      K+R       +F   +AL  EM   +P L +   F  L+  
Sbjct: 22  NPNLLGGGAAARAFSDYREKLRTGFLHSIRFEDAFALFFEMVHSQP-LPSIVDFTRLLTA 80

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
            A+ R  +  I    +M  YG   D + F  L+   C+ S +  A  +  +M +  ++PS
Sbjct: 81  TANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPS 140

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +  F SLL+G+C   ++ +A  +++ M  +G+EP++VVYN L+ G  + G++  A ELL 
Sbjct: 141 IVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLN 200

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EM +KG   +  +Y  L+  LC   +  +A R   +M +     DVVT+T LI  F K  
Sbjct: 201 EMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQG 260

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHI---MLAHEKKEELEECVELMGEMRKIGCVPDVS 419
            +D   E+   MIQ  + PN +TY  I   +  H +  + ++  +LM      GC P+V 
Sbjct: 261 NLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASK---GCFPNVV 317

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN +I   CK   + E + ++  M     +    ++  ++HG+   G L  A + F  M
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V R +   P   T   LL+ L    ++E A   +  +      + + A+ I IH L    
Sbjct: 378 VSRRV--TPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKAD 435

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V++A      +    V P   T+  ++ GL K   R+   E  E +R+M  E  I
Sbjct: 436 KVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRR---EADELIRRMKEEGII 488


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 216/471 (45%), Gaps = 11/471 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y +LI     +    A   +++ M  EK        + +L++ +     +
Sbjct: 258 EPNIV----TYHSLINGYVSLGDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQCKM 312

Query: 191 KKAIEVLDEMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            +A +VL  M +     PDE  +G L+D  C+   + +A +L DEM R   K +L    S
Sbjct: 313 DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNS 372

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+CK G++ EA+ V+ +M D   +PD   YN LL GY + G  ++AF L  +M ++G
Sbjct: 373 LINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEG 432

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            +P   +Y  L++ LCR+   ++A + +  M + G   D V Y+TL+ G  K    +   
Sbjct: 433 IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGAS 492

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   ++ RG   +++T+  ++    K  ++ E  E+  +M+ +GC PD   Y  +I   
Sbjct: 493 TLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   + +A  V   ME   +SP  + +  ++ G      L+E  +   EM  RGL   P
Sbjct: 553 CKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGL--TP 610

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  AL++   +   ++ A   +  +   G   N+   +  +  L+  G + EA    
Sbjct: 611 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 670

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM 599
             M+D    P  + F K    ++    ++IA  + E  +       I + +
Sbjct: 671 QKMVDHGFFPDHECFLK--SDIRYAAIQKIADSLDESCKTFLLPNNIVYNI 719



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 215/514 (41%), Gaps = 66/514 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK   K  K      ++  M++E   +     + +L+  +     +  A+ +LDEM
Sbjct: 299 YTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEM 358

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            + G + + F+   L++  CK   + EA  +   M +   KP    + +LL G+C+EG  
Sbjct: 359 LRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHT 418

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M   G EP ++ YN LL G  ++G   DA ++   M + G  P+   Y+ L
Sbjct: 419 SEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTL 478

Query: 320 -----------------------------------IQALCRMEKMEEANRAFVEMERSGC 344
                                              I  LC+M KM EA   F +M+  GC
Sbjct: 479 LDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 538

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             D +TY TLI G+CK+  + + +++  +M +  I P+   Y  ++    K   L E  +
Sbjct: 539 SPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTD 598

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ EM   G  P++  Y  +I   CK G L +A + + EM    LS        MV G  
Sbjct: 599 LLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLY 658

Query: 465 GQGCLIEACEYFKEMVGRGLL--------SAPQYGTLKALLNSL---------------- 500
             G + EA    ++MV  G          S  +Y  ++ + +SL                
Sbjct: 659 RLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYN 718

Query: 501 ------LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
                  +  KV+ A+  +S +  KG   + + +   IH   + G+V EA     +M+  
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRR 778

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            ++P   T+  L+ GL K  N   A  +  K+ +
Sbjct: 779 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQ 812



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 222/494 (44%), Gaps = 34/494 (6%)

Query: 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR-----KE 167
           R     +LG+  + + SKQ N+  +   Y  L+  LS+ R +    A + ++      K+
Sbjct: 79  RLNPTASLGF--FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKD 136

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +  +I  E+ V + R FA +  V                     F  +L    +    K 
Sbjct: 137 RGNVIWDEL-VGVYREFAFSPTV---------------------FDMILKVYVEKGLTKN 174

Query: 228 AAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +FD M +  + PSLR   SLL    K G+   A YV  QM   G  PD+ + + +++
Sbjct: 175 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 234

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            + + GK+ +A   +K+M   G +PN  +Y  LI     +  +E A      M   G   
Sbjct: 235 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 294

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVEL 405
           +VVTYT LI G+CK  K+D   ++L  M +   ++P++  Y  ++  + +  ++++ V L
Sbjct: 295 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 354

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + EM ++G   ++   N +I   CK GE+ EA  V   M   +L P + S+  ++ G+  
Sbjct: 355 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCR 414

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           +G   EA     +M+  G+   P   T   LL  L R    + A  +W  ++  G   + 
Sbjct: 415 EGHTSEAFNLCDKMLQEGI--EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDE 472

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
             ++  +  LF   + + A +   D++         TF  ++ GL K+     A EI +K
Sbjct: 473 VGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDK 532

Query: 586 VRKMA-AERQITFK 598
           ++ +  +   IT++
Sbjct: 533 MKDLGCSPDGITYR 546



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 189/439 (43%), Gaps = 53/439 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR LI    K    G  + +   M +E     + E++  L+     +R + +  ++L EM
Sbjct: 545 YRTLIDGYCKASNVGQAFKVKGAMEREXIS-PSIEMYNSLISGLFKSRRLVEXTDLLTEM 603

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  P+   +G L+D  CK   + +A   + EM E     ++   ++++ G  + G++
Sbjct: 604 GIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRI 663

Query: 260 VEAKYVLVQMKDAGFEPD--------------------------------IVVYNNLLSG 287
            EA  ++ +M D GF PD                                 +VYN  ++G
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAG 723

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             + GK+ DA      +  KG  P+  +Y  LI        ++EA R   EM R G   +
Sbjct: 724 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           +VTY  LI+G CKS  +DR   +   + Q+G+ PN +TY  ++  + K   ++   +L  
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 843

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M + G  P V  Y+ +I   CK G+++ ++ + N+M  A +      +  +V G     
Sbjct: 844 KMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGF--- 900

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
                   + EM      S P+   LK  +N  L  +     K V   +V   C + ++ 
Sbjct: 901 ----KTSNYNEM------SKPE--ALKQNMNCFLLPKFKHSWKFVG--VVALDCPIRIFG 946

Query: 528 --WTIWIHSLFSNGHVKEA 544
              TIW + +  + HVK++
Sbjct: 947 PKGTIWFNLINESWHVKDS 965



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 173/369 (46%), Gaps = 40/369 (10%)

Query: 105 GLTER-VINRCGDAGNLGYRYYMWASKQPNYVH-SYDVYRALIKSLSKMRKFGAVWALME 162
           G+T R +I+    A N+G  + +  + +   +  S ++Y +LI  L K R+      L+ 
Sbjct: 542 GITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLT 601

Query: 163 EM--RKEKPQLITTEVFV-------ILMRRFAS----------------ARMVK------ 191
           EM  R   P ++T    +       +L + F+S                + MV       
Sbjct: 602 EMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLG 661

Query: 192 ---KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFT 247
              +A  ++ +M  +G  PD     C L +  + +++++ A   DE  + F  P+   + 
Sbjct: 662 RIDEANLLMQKMVDHGFFPDH---ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYN 718

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
             + G CK GK+ +A+     +   GF PD   Y  L+ GY+  G + +AF L  EM R+
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRR 778

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +Y  LI  LC+ E ++ A R F ++ + G   +VVTY TLI G+CK   +D  
Sbjct: 779 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAA 838

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           +++ D MI+ GI P+ +TY  ++    K  ++E  ++L+ +M K G    +  Y  +++ 
Sbjct: 839 FKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898

Query: 428 ACKLGELKE 436
             K     E
Sbjct: 899 GFKTSNYNE 907


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 218/455 (47%), Gaps = 23/455 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y  L+ +  +  +      L+  MR+   KP L+T   F  ++     A  
Sbjct: 223 PNVV----TYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVT---FNSMVNGMCKAGK 275

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           ++ A +V DEM + G  PD   +  L+   CK     EA  +F EM ++   P +  FTS
Sbjct: 276 MEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTS 335

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++  CK G L  A  ++ QM++ G + + V +  L+ G+ + G + DA   ++ M++  
Sbjct: 336 LIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCR 395

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+   Y  LI   C + +M+EA     EME  G + DVVTY+T+IS +CK+      +
Sbjct: 396 IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAF 455

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+   M+++G+LP+ +TY  ++     ++ L +   L   M K+G  PD   Y  +I   
Sbjct: 456 ELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH 515

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA- 487
           CK G ++ A+++ ++M  A + P   ++ V+++G       +EA +   ++     + A 
Sbjct: 516 CKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPAN 575

Query: 488 PQYGTL-----KALLNSLLRAQK-------VEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +Y  L     KA L S+L   K       +  A  V+  ++ +   L+   +++ IH  
Sbjct: 576 TKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGH 635

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              G+V +A S+   M+     P   +   L+RGL
Sbjct: 636 CRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGL 670



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 204/405 (50%), Gaps = 16/405 (3%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCK 255
            D M   G  P+ + +  L+ ALC     KEA  +  +MR     P++  + +L+  + +
Sbjct: 178 FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFR 237

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++  A+ ++  M++ G +P++V +N++++G  + GKM DA ++  EM R+G  P+  S
Sbjct: 238 AGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVS 297

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  L+   C+     EA   F EM + G   DVVT+T+LI   CK+  ++R   ++  M 
Sbjct: 298 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMR 357

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           +RG+  N++T+  ++    KK  L++ +  +  M++    P V  YN +I   C +G + 
Sbjct: 358 ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMD 417

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA  + +EMEA  L P   ++  ++  +        A E  ++M+ +G+L  P   T  +
Sbjct: 418 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVL--PDAITYSS 475

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+  L   +++  A  ++  ++  G + + + +T  I      G+V+ A S    M+ A 
Sbjct: 476 LIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAG 535

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
           V+P   T++ L+ GL K              R M A+ Q+ FK+Y
Sbjct: 536 VLPDVVTYSVLINGLSK------------SARAMEAQ-QLLFKLY 567



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 203/447 (45%), Gaps = 19/447 (4%)

Query: 134 YVHSYDVYRALI-----KSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           YV S   Y A++      SL+  R+F       + M  +   P + T   + IL+R    
Sbjct: 152 YVPSVLAYNAVLLALSDASLTSARRF------FDSMLSDGVAPNVYT---YNILVRALCG 202

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
               K+A+ +L +M   GC P+   +  L+ A  +   V  A +L   MRE   KP+L  
Sbjct: 203 RGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVT 262

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F S++ G CK GK+ +A+ V  +M   G  PD V YN L+ GY + G   +A  +  EM 
Sbjct: 263 FNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMT 322

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           +KG  P+  ++T LI  +C+   +E A     +M   G + + VT+T LI GFCK   +D
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 382

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
                +  M Q  I P+ + Y  ++  +     ++E  EL+ EM   G  PDV  Y+ +I
Sbjct: 383 DALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTII 442

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK  +   A  +  +M    + P   ++  ++    G+  L +A   FK M+  GL 
Sbjct: 443 SAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGL- 501

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  +L++   +   VE A  +   +V  G   +V  +++ I+ L  +    EA 
Sbjct: 502 -QPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQ 560

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
                +   D +P    +  LM   +K
Sbjct: 561 QLLFKLYHEDPIPANTKYDALMHCCRK 587



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 152/343 (44%), Gaps = 39/343 (11%)

Query: 273 GFEPDIVVYNNLLSGYAQM----------------------------------GKMTDAF 298
           G+ P ++ YN +L   +                                    G   +A 
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 210

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            +L++MR  GC PN  +Y  L+ A  R  +++ A R    M   G + ++VT+ ++++G 
Sbjct: 211 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGM 270

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK+ K++   ++ D M++ G+ P+ ++Y  ++  + K     E + +  EM + G +PDV
Sbjct: 271 CKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 330

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +  +I + CK G L+ AV +  +M    L     +F  ++ GF  +G L +A    + 
Sbjct: 331 VTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRG 390

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  +     P      AL+N      +++ A+++   +  KG + +V  ++  I +   N
Sbjct: 391 M--KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKN 448

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMR---GLKKLYNRQI 578
                A      M++  V+P   T++ L+R   G K+L +  +
Sbjct: 449 CDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHV 491



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 137/329 (41%), Gaps = 21/329 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI     + +      L+ EM  +  KP ++T   +  ++  +        A E+  
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT---YSTIISAYCKNCDTHSAFELNQ 459

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M + G  PD   +  L+  LC    + +A  LF  M +   +P    +TSL+ G CKEG
Sbjct: 460 QMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 519

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +  +M  AG  PD+V Y+ L++G ++  +  +A +LL ++  +   P    Y 
Sbjct: 520 NVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYD 579

Query: 318 VL---------------IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            L               ++  C    M EA++ +  M       D   Y+ LI G C++ 
Sbjct: 580 ALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAG 639

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            + +       M+Q G  PN  + + ++    +   + E  +++ ++     + D     
Sbjct: 640 NVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASK 699

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +I L    G +   ++V + M    L P
Sbjct: 700 ALIDLNLNEGNVDAVLDVLHGMAKDGLLP 728



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 21/260 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L   ++      L + M K   +P   T   +  L+        V+ A+ + D
Sbjct: 473 YSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFT---YTSLIDGHCKEGNVESALSLHD 529

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPS--------------- 242
           +M K G  PD   +  L++ L K++   EA +L F    E   P+               
Sbjct: 530 KMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAE 589

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L+   +LL G+C +G + EA  V   M D  +  D  VY+ L+ G+ + G +  A    K
Sbjct: 590 LKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHK 649

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M + G  PN+ S   LI+ L     + EA++   ++      AD      LI       
Sbjct: 650 QMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEG 709

Query: 363 KIDRCYEILDSMIQRGILPN 382
            +D   ++L  M + G+LP+
Sbjct: 710 NVDAVLDVLHGMAKDGLLPS 729


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 203/460 (44%), Gaps = 43/460 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI    K     A    M EM  +K +P ++T   +  LM  + S   + KA+ +  
Sbjct: 440 YNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVT---YTSLMGGYCSKGKINKALRLYH 496

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM   G  P  + F  LL  L +   +++A KLF+EM E   KP+   +  ++ G+C+EG
Sbjct: 497 EMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEG 556

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A   L +M + G  PD   Y  L+ G    G+ ++A   +  + +  C+ N   YT
Sbjct: 557 DMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYT 616

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   CR  K+EEA     EM + G + D+V Y  LI G  K +     + +L  M  R
Sbjct: 617 GLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDR 676

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+ + Y  ++ A  K  + +E   +   M   GCVP+   Y  VI   CK G + EA
Sbjct: 677 GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736

Query: 438 VNVWNEMEAASLSPG-----------------------------------TDSFVVMVHG 462
             + ++M+  S  P                                    T ++ +++ G
Sbjct: 737 EVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRG 796

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F  QG + EA E    M+G G+  +P   T   ++N L R   V+ A ++W+ +  KG  
Sbjct: 797 FCRQGRIEEASELITRMIGDGV--SPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR 854

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
            +  A+   IH     G + +A     +M+   ++P   T
Sbjct: 855 PDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 213/474 (44%), Gaps = 43/474 (9%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           AL+  L K R FG    L  +M     +P +    ++  ++R     + + +A E++  M
Sbjct: 197 ALLHGLVKFRHFGLAMELFNDMVSVGIRPDVY---IYTGVIRSLCELKDLSRAKEMIAHM 253

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAA------------------------------- 229
              GC+ +   +  L+D LCK   V EA                                
Sbjct: 254 EATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEF 313

Query: 230 ----KLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
               ++ DEM   RF PS    +SL+ G  K GK+ EA  ++ ++ D G  P++ VYN L
Sbjct: 314 EIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNAL 373

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +    +  K  +A  L   M + G  PN  +Y++LI   CR  K++ A     EM  +G 
Sbjct: 374 IDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGL 433

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           +  V  Y +LI+G CK   I      +  MI + + P  +TY  +M  +  K ++ + + 
Sbjct: 434 KLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALR 493

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  EM   G  P +  +  ++    + G +++AV ++NEM   ++ P   ++ VM+ G+ 
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G + +A E+ KEM  +G++  P   + + L++ L    +   AK     +    CELN
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIV--PDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELN 611

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
              +T  +H     G ++EA S C +M+   V      +  L+ G  K  +R++
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKL 665



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 197/460 (42%), Gaps = 29/460 (6%)

Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKF--GAVWALMEEMRKEKPQLIT 173
           D   LG R++ +      + HS   +  LI +L K   F   +       +R  KP    
Sbjct: 82  DDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKP---- 137

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           ++VF +L   +   ++   +                  F  L+    ++  V +   +F 
Sbjct: 138 SDVFNVLFSCYEKCKLSSSS-----------------SFDLLIQHYVRSRRVLDGVLVFK 180

Query: 234 EMRERFK--PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            M  +    P +R  ++LL+G  K      A  +   M   G  PD+ +Y  ++    ++
Sbjct: 181 MMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCEL 240

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
             ++ A E++  M   GCD N   Y VLI  LC+ +K+ EA     ++     + DVVTY
Sbjct: 241 KDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTY 300

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            TL+ G CK ++ +   E++D M+     P++     ++    K+ ++EE + L+  +  
Sbjct: 301 CTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVD 360

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  P++  YN +I   CK  +  EA  +++ M    L P   ++ +++  F  +G L  
Sbjct: 361 FGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDT 420

Query: 472 ACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           A  +  EMV  GL LS   Y    +L+N   +   +  A+   + ++ K  E  V  +T 
Sbjct: 421 ALSFLGEMVDTGLKLSVYPY---NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTS 477

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +    S G + +A     +M    + P   TF  L+ GL
Sbjct: 478 LMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 171/384 (44%), Gaps = 49/384 (12%)

Query: 140 VYRA-LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           ++RA LI+   K+    A W +       KP  +T   + +++  +     + KA E L 
Sbjct: 517 LFRAGLIRDAVKLFNEMAEWNV-------KPNRVT---YNVMIEGYCEEGDMSKAFEFLK 566

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--FTSLLYGWCKE 256
           EM + G  PD + +  L+  LC      EA K+F +   +    L    +T LL+G+C+E
Sbjct: 567 EMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCRE 625

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GKL EA  V  +M   G + D+V Y  L+ G  +       F LLKEM  +G  P+   Y
Sbjct: 626 GKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIY 685

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T +I A  +    +EA   +  M   GC  + VTYT +I+G CK+  ++    +   M  
Sbjct: 686 TSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQP 745

Query: 377 RGILPNQLTY---LHIMLAHE--------------------------------KKEELEE 401
              +PNQ+TY   L I+   E                                ++  +EE
Sbjct: 746 VSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEE 805

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             EL+  M   G  PD   Y  +I   C+  ++K+A+ +WN M    + P   ++  ++H
Sbjct: 806 ASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIH 865

Query: 462 GFLGQGCLIEACEYFKEMVGRGLL 485
           G    G + +A E   EM+ +GL+
Sbjct: 866 GCCVAGEMGKATELRNEMLRQGLI 889



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
            SL P   +   ++HG +       A E F +MV  G+   P       ++ SL   + +
Sbjct: 186 VSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGI--RPDVYIYTGVIRSLCELKDL 243

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             AK++ + +   GC++N+  + + I  L     V EA     D+   D+ P   T+  L
Sbjct: 244 SRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTL 303

Query: 567 MRGLKKLYNRQIAAEITEKV 586
           + GL K+   +I  E+ +++
Sbjct: 304 VYGLCKVQEFEIGLEMMDEM 323


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 166/686 (24%), Positives = 277/686 (40%), Gaps = 118/686 (17%)

Query: 5   SSKALSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTH 64
           +SK L LL + RR  F+P      + + S                     CK   T D  
Sbjct: 107 TSKGLELLGEMRRLGFSPNKVVYNTLISSF--------------------CKEGKTDDAE 146

Query: 65  GSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRY 124
              +E   D   +   +  F++R+     AL  SG VL      R+         LG   
Sbjct: 147 KLVDEMRKD--GLSPDVVTFNARIS----ALCSSGKVLE---ASRIFRDMQIDEVLGL-- 195

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
                 QPN +     Y  ++    K        AL E+M K    L+  E + I +   
Sbjct: 196 -----PQPNII----TYNLMLGGFCKEGMLEEARALFEKM-KVSENLMNRESYNIWLLGL 245

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
                + +A  VL EM   G EP+ + +  ++D LCKN  + +A  L   M      P  
Sbjct: 246 VRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDT 305

Query: 244 RHFTSLLYGWC-----------------------------------KEGKLVEAKYVLVQ 268
             +T+LL+G+C                                   KEG++ EA+ +L +
Sbjct: 306 VTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQK 365

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-----------------------R 305
           M + G+  D V  N ++ G    GK+  A E++  M                        
Sbjct: 366 MNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDS 425

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           RK C P+  SY+ +I  LC+  ++ EA + F+EM     + D   Y   I  FCK  KI 
Sbjct: 426 RKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKIS 485

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             + +L  M ++G      TY  +++    K ++ E   L+ EMR+ G  PDVS YN V+
Sbjct: 486 SAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVL 545

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY--FKEMVGRG 483
              C+ G +K+A +V +EM    +SP   SF +++  F       +AC++    E+    
Sbjct: 546 SSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAF------CKACDFSAVDEIFEIA 599

Query: 484 LLSAPQYGTLKAL-LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           L        L +L  N LL   +V  AK+++   + +  ++  + +   I  L  +  + 
Sbjct: 600 LNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLD 659

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKR 602
           +A      ++D      P +F  ++ GL K  N+  A E+ EK+ +MA+E ++  K++  
Sbjct: 660 DASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMASEGKVKNKVH-- 717

Query: 603 RGERDLKEKAKKQVDGRKRRARQRRW 628
                  + A   + G+K +  +  W
Sbjct: 718 -------QNASCSIQGKKNKDGESEW 736



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 195/457 (42%), Gaps = 65/457 (14%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL+R +  A    K +E+L EM + G  P++ V+  L+ + CK     +A KL DEMR
Sbjct: 94  FGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMR 153

Query: 237 -ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF----EPDIVVYNNLLSGY--- 288
            +   P +  F + +   C  GK++EA  +   M+        +P+I+ YN +L G+   
Sbjct: 154 KDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKE 213

Query: 289 --------------------------------AQMGKMTDAFELLKEMRRKGCDPNANSY 316
                                            ++GK+ +A  +LKEM   G +PN  SY
Sbjct: 214 GMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSY 273

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +++  LC+   + +A      M  SG   D VTYTTL+ G+C + K+     +L  M++
Sbjct: 274 NIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMR 333

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G  PN  T   ++ +  K+  + E  EL+ +M + G V D    N+VI   C  G+L +
Sbjct: 334 DGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDK 393

Query: 437 AVNVWNEM---EAASLS--------------------PGTDSFVVMVHGFLGQGCLIEAC 473
           A+ + N M    +A+L                     P   S+  ++ G    G + EA 
Sbjct: 394 AIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAK 453

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           + F EM+G+ L   P        ++S  +  K+  A  V   +  KGC   +  +   I 
Sbjct: 454 KKFIEMMGKNL--QPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIM 511

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            L S   + E      +M +  V P    +  ++  L
Sbjct: 512 GLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSL 548



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 209/461 (45%), Gaps = 37/461 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           P    S  +Y  L++S +K  +   V  L ++M      P+   T  F +L+     +  
Sbjct: 15  PENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPE---TYTFNVLIGLLCDSGC 71

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           +  A E+ D+MP+ GCEP+E+ FG L+   C+     +  +L  EMR   F P+   + +
Sbjct: 72  LDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNT 131

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  +CKEGK  +A+ ++ +M+  G  PD+V +N  +S     GK+ +A  + ++M+   
Sbjct: 132 LISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDE 191

Query: 309 C----DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
                 PN  +Y +++   C+   +EEA   F +M+ S    +  +Y   + G  +  K+
Sbjct: 192 VLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKL 251

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
                +L  M+  G+ PN  +Y  +M    K   L +   LM  M   G +PD   Y  +
Sbjct: 252 LEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTL 311

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +   C  G++ EA NV  EM     SP   +  ++++    +G + EA E  ++M  +G 
Sbjct: 312 LHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGY 371

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG-----------------------C 521
           +      T   +++ L    K++ A ++ + + T G                       C
Sbjct: 372 VIDTV--TCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKC 429

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             ++ +++  I  L   G V EA    ++MM  ++  QPD+
Sbjct: 430 MPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNL--QPDS 468



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 148/299 (49%), Gaps = 8/299 (2%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I +YN LL    + G++     L K+M   G  P   ++ VLI  LC    +++A   
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F +M   GCE +  ++  L+ G+C++    +  E+L  M + G  PN++ Y  ++ +  K
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL----SP 451
           + + ++  +L+ EMRK G  PDV  +N  I   C  G++ EA  ++ +M+   +     P
Sbjct: 139 EGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQP 198

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
              ++ +M+ GF  +G L EA   F++M V   L++   Y      L  L+R  K+  A+
Sbjct: 199 NIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESY---NIWLLGLVRIGKLLEAQ 255

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            V   +V  G E NVY++ I +  L  NG + +A      M  + V+P   T+  L+ G
Sbjct: 256 LVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHG 314



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 154/360 (42%), Gaps = 44/360 (12%)

Query: 227 EAAKLFDEMRERFK---PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           +A   F  +R RF    PS+  +  LL    KEG++    ++   M  +G  P+   +N 
Sbjct: 2   KAISQFKSLRFRFPENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNV 61

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+      G + DA EL  +M  KGC+PN  S+ +L++  CR     +      EM R G
Sbjct: 62  LIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLG 121

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY----------------- 386
              + V Y TLIS FCK  K D   +++D M + G+ P+ +T+                 
Sbjct: 122 FSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEAS 181

Query: 387 ---------------------LHIMLAHEKKEE-LEECVELMGEMRKIGCVPDVSNYNVV 424
                                 ++ML    KE  LEE   L  +M+    + +  +YN+ 
Sbjct: 182 RIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIW 241

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +    ++G+L EA  V  EM    + P   S+ +++ G    G L +A    + M   G+
Sbjct: 242 LLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGV 301

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  P   T   LL+      KV  A +V   ++  GC  N Y   I ++SL+  G + EA
Sbjct: 302 L--PDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEA 359


>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
          Length = 520

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 188/401 (46%), Gaps = 13/401 (3%)

Query: 94  ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS---- 149
           AL   G  L   L   V++R      L +R++ WAS+Q  Y H    Y  +I  LS    
Sbjct: 67  ALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYNHEPTTYNDIIDILSGTRY 126

Query: 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
           K R+FG +  +++ M++   + +  E  + ++R +    +            +    P+ 
Sbjct: 127 KSRQFGVLCNVLDHMKRHGSRSVPVEDLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPET 186

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
                LLDA CK   VKEA  +F  ++ +   +   +++L +GWC+     +A  VL +M
Sbjct: 187 DALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEM 246

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQALCRM 326
                 P+   Y   +  +   G +++A EL + MR +G     P A +Y+++I AL + 
Sbjct: 247 IQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVALAKA 306

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
           ++MEE      +M   GC  DV TY  LI G C   K+D  Y +LD M + G  P+ +TY
Sbjct: 307 DRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTY 366

Query: 387 ---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
              L++  +H K ++  E  E M E     C P V  YN+++ +  ++GE   A+++  E
Sbjct: 367 NCFLNVFCSHRKADDALELCERMIEAH---CEPSVHTYNMMMMMFFEMGEAHRALDICLE 423

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           M+        D++ +M++G    G    A     E++ R +
Sbjct: 424 MDKRRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDM 464



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 127/283 (44%), Gaps = 15/283 (5%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           + Y  L     + R       ++EEM   K  P+  T   +V  +  F SA +V +A E+
Sbjct: 221 ETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFT---YVAAIISFCSAGLVSEAREL 277

Query: 197 LDEMPKYG---CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
            + M   G     P    +  ++ AL K   ++E  +L  +MR     P +  +  L+ G
Sbjct: 278 FEFMRTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEG 337

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            C  GKL  A  VL +M  AGF PDIV YN  L+ +    K  DA EL + M    C+P+
Sbjct: 338 MCLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVFCSHRKADDALELCERMIEAHCEPS 397

Query: 313 ANSYTVLIQALCRMEKMEEANRAF---VEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            ++Y +++       +M EA+RA    +EM++  C+  + TY  +I G     + +    
Sbjct: 398 VHTYNMMMMM---FFEMGEAHRALDICLEMDKRRCQRAIDTYEIMIYGLFDCGETEYATA 454

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +LD +I R +  +   +  IML       L     L   MRK 
Sbjct: 455 LLDEVINRDMKLSYKKFDAIMLRLSDVGNLGAIHRLSEHMRKF 497


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 217/467 (46%), Gaps = 37/467 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFV------------------IL 180
           +  ++ S +KM+ +    +L    E++  +P LIT  + +                  IL
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 181 MRRFASARM--------------VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
            R +    +              VKKA+   D++   G + ++  +  L++ +CK    +
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 227 EAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A K   ++  R  KP +  + +++   CK   + EA  +  +M   G   D+V YN L+
Sbjct: 182 AAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLI 241

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+  +GK+ +A  LL EM  K  +PN  +Y +L+ ALC+  K++EA      M ++  +
Sbjct: 242 YGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            DV+TY+TL+ G+    ++ +   + ++M   G+ P+  TY  ++    K + ++E + L
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             EM +   VP +  Y+ +I   CK G +    ++ +EM          ++  ++ G   
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCK 421

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G L  A   F +M  + +   P   T   LL+ L +  +++ A++V+  ++TKG  LNV
Sbjct: 422 NGHLDRAIALFNKMKDQEI--RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNV 479

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           Y + + I+     G ++EA +    M D   +P   TF  ++  L K
Sbjct: 480 YTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFK 526



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 186/383 (48%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  + K+    A    + ++  R  KP ++     +  M ++   ++V +A  +  
Sbjct: 167 YATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKY---QLVSEAYGLFS 223

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G   D   +  L+   C    +KEA  L +EM  +   P++  +  L+   CKEG
Sbjct: 224 EMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK VL  M  A  +PD++ Y+ L+ GY  + ++  A  +   M   G  P+ ++YT
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+ + ++EA   F EM +      +VTY++LI G CKS +I   ++++D M  R
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   + +TY  ++    K   L+  + L  +M+     P++  + +++   CK G LK+A
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDA 463

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+ ++          ++ VM++G   QG L EA     +M   G +  P   T + ++
Sbjct: 464 QEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCI--PNAFTFETII 521

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            +L +  + + A+ +   ++ +G
Sbjct: 522 IALFKKDENDKAEKLLRQMIARG 544



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 175/349 (50%), Gaps = 6/349 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVL 197
           +Y  +I ++ K +     + L  EM  +    I+ +V  +  L+  F     +K+AI +L
Sbjct: 201 MYNTIIDAMCKYQLVSEAYGLFSEMAVKG---ISADVVTYNTLIYGFCIVGKLKEAIGLL 257

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +EM      P+ + +  L+DALCK   VKEA  +   M +   KP +  +++L+ G+   
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLV 317

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +A++V   M   G  PD+  Y  L++G+ +   + +A  L KEM +K   P   +Y
Sbjct: 318 YEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTY 377

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI  LC+  ++        EM   G  ADV+TY++LI G CK+  +DR   + + M  
Sbjct: 378 SSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKD 437

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           + I PN  T+  ++    K   L++  E+  ++   G   +V  YNV+I   CK G L+E
Sbjct: 438 QEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEE 497

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           A+ + ++ME     P   +F  ++     +    +A +  ++M+ RGLL
Sbjct: 498 ALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 169/350 (48%), Gaps = 3/350 (0%)

Query: 224 SVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           +V +A   F+ M   R  P +  F  +L  + K      A  +  +++  G +PD++  N
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++ +  MG++T  F +L ++ ++G  P+  +   LI+ LC   ++++A     ++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G + + V+Y TLI+G CK        + L  +  R   P+ + Y  I+ A  K + + E 
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEA 218

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             L  EM   G   DV  YN +I   C +G+LKEA+ + NEM   +++P   ++ ++V  
Sbjct: 219 YGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +G + EA      M+   +   P   T   L++      +V+ A+ V++ +   G  
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACV--KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 336

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +V+ +TI I+    N  V EA +   +M   +++P   T++ L+ GL K
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 128/320 (40%), Gaps = 37/320 (11%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I+ +N +L  +A+M   + A  L   +  KG  P+  +  +LI   C M ++      
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G   D VT  TLI G C   ++ +     D ++ +G   NQ++Y  ++    K
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +    ++ + ++      PDV  YN +I   CK   + EA  +++EM    +S    +
Sbjct: 177 IGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVT 236

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +++GF   G L EA     EMV                                   
Sbjct: 237 YNTLIYGFCIVGKLKEAIGLLNEMV----------------------------------- 261

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
              K    NVY + I + +L   G VKEA S    M+ A V P   T++ LM G   +Y 
Sbjct: 262 --LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 576 RQIAAEITEKVRKMAAERQI 595
            + A  +   +  M     +
Sbjct: 320 VKKAQHVFNAMSLMGVTPDV 339



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 37/214 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q N V     Y +LI  L K  +   VW L++EMR                         
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR----------------------- 403

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
                        G   D   +  L+D LCKN  +  A  LF++M+++  +P++  FT L
Sbjct: 404 -------------GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTIL 450

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L G CK G+L +A+ V   +   G+  ++  YN +++G+ + G + +A  +L +M   GC
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGC 510

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
            PNA ++  +I AL + ++ ++A +   +M   G
Sbjct: 511 IPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 216/471 (45%), Gaps = 11/471 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y +LI     +    A   +++ M  EK        + +L++ +     +
Sbjct: 224 EPNIV----TYHSLINGYVSLGDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQCKM 278

Query: 191 KKAIEVLDEMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            +A +VL  M +     PDE  +G L+D  C+   + +A +L DEM R   K +L    S
Sbjct: 279 DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNS 338

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+CK G++ EA+ V+ +M D   +PD   YN LL GY + G  ++AF L  +M ++G
Sbjct: 339 LINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEG 398

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            +P   +Y  L++ LCR+   ++A + +  M + G   D V Y+TL+ G  K    +   
Sbjct: 399 IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGAS 458

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   ++ RG   +++T+  ++    K  ++ E  E+  +M+ +GC PD   Y  +I   
Sbjct: 459 TLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 518

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   + +A  V   ME   +SP  + +  ++ G      L+E  +   EM  RGL   P
Sbjct: 519 CKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGL--TP 576

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  AL++   +   ++ A   +  +   G   N+   +  +  L+  G + EA    
Sbjct: 577 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 636

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM 599
             M+D    P  + F K    ++    ++IA  + E  +       I + +
Sbjct: 637 QKMVDHGFFPDHECFLK--SDIRYAAIQKIADSLDESCKTFLLPNNIVYNI 685



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 216/514 (42%), Gaps = 66/514 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK   K  K      ++  M++E   +     + +L+  +     +  A+ +LDEM
Sbjct: 265 YTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEM 324

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            + G + + F+   L++  CK   + EA  +   M +   KP    + +LL G+C+EG  
Sbjct: 325 LRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHT 384

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M   G EP ++ YN LL G  ++G   DA ++   M ++G  P+   Y+ L
Sbjct: 385 SEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTL 444

Query: 320 -----------------------------------IQALCRMEKMEEANRAFVEMERSGC 344
                                              I  LC+M KM EA   F +M+  GC
Sbjct: 445 LDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 504

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             D +TY TLI G+CK+  + + +++  +M +  I P+   Y  ++    K   L E  +
Sbjct: 505 SPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTD 564

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ EM   G  P++  Y  +I   CK G L +A + + EM    LS        MV G  
Sbjct: 565 LLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLY 624

Query: 465 GQGCLIEACEYFKEMVGRGLL--------SAPQYGTLKALLNSL---------------- 500
             G + EA    ++MV  G          S  +Y  ++ + +SL                
Sbjct: 625 RLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYN 684

Query: 501 ------LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
                  +  KV+ A+  +S +  KG   + + +   IH   + G+V EA     +M+  
Sbjct: 685 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRR 744

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            ++P   T+  L+ GL K  N   A  +  K+ +
Sbjct: 745 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQ 778



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 219/483 (45%), Gaps = 32/483 (6%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR-----KEKPQLITTEVFV 178
           ++ + SKQ N+  +   Y  L+  LS+ R +    A + ++      K++  +I  E+ V
Sbjct: 54  FFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDEL-V 112

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
            + R FA +  V                     F  +L    +    K A  +FD M + 
Sbjct: 113 GVYREFAFSPTV---------------------FDMILKVYVEKGLTKNALYVFDNMGKC 151

Query: 239 FK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            + PSLR   SLL    K G+   A YV  QM   G  PD+ + + +++ + + GK+ +A
Sbjct: 152 GRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEA 211

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
              +K+M   G +PN  +Y  LI     +  +E A      M   G   +VVTYT LI G
Sbjct: 212 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 271

Query: 358 FCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
           +CK  K+D   ++L  M +   ++P++  Y  ++  + +  ++++ V L+ EM ++G   
Sbjct: 272 YCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKT 331

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           ++   N +I   CK GE+ EA  V   M   +L P + S+  ++ G+  +G   EA    
Sbjct: 332 NLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLC 391

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
            +M+  G+   P   T   LL  L R    + A  +W  ++ +G   +   ++  +  LF
Sbjct: 392 DKMLQEGI--EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLF 449

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA-AERQI 595
              + + A +   D++         TF  ++ GL K+     A EI +K++ +  +   I
Sbjct: 450 KMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGI 509

Query: 596 TFK 598
           T++
Sbjct: 510 TYR 512



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 170/391 (43%), Gaps = 38/391 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+  L KM  F     L +++  R      IT   F  ++        + +A E+ D
Sbjct: 441 YSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT---FNTMISGLCKMGKMVEAEEIFD 497

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M   GC PD   +  L+D  CK S+V +A K+   M RE   PS+  + SL+ G  K  
Sbjct: 498 KMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 557

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +LVE   +L +M   G  P+IV Y  L+ G+ + G +  AF    EM   G   N    +
Sbjct: 558 RLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICS 617

Query: 318 VLIQALCRMEKMEEANRAFVEMERSG--------CEADV--------------------- 348
            ++  L R+ +++EAN    +M   G         ++D+                     
Sbjct: 618 TMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLL 677

Query: 349 ---VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
              + Y   I+G CK+ K+D        +  +G +P+  TY  ++  +     ++E   L
Sbjct: 678 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 737

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             EM + G VP++  YN +I   CK   +  A  +++++    L P   ++  ++ G+  
Sbjct: 738 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 797

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
            G +  A +   +M+  G+  + Q   L+++
Sbjct: 798 IGNMDAAFKLKDKMIEEGISPSIQCNLLESV 828


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 183/378 (48%), Gaps = 36/378 (9%)

Query: 9   LSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHN 68
           ++LL    RF  +  P+       S  TT++   SNL+   + +D+     T  T  S  
Sbjct: 1   MALLKTKLRFPHSLSPHLLKPFSSSPLTTSD---SNLLEDDSNDDEEHTIKTPKTPLSPE 57

Query: 69  EFSHDVEKIFRILKKFHSRLPK-----------LELALQHSGVV-----LRPGLTERVIN 112
           E +   EK+  ++K  +   P              L+L  S  +     + P +   VI 
Sbjct: 58  E-TFVAEKLHSLIKDHYRNNPNKTLPPDPTYTIPSLSLDFSQTISTVHSISPSIIRHVIE 116

Query: 113 RCGDAGNLGYR----------YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           + G     G R          ++ WAS Q  +  S + +  ++    K+R F   W +++
Sbjct: 117 QSG-----GVRHGIPVPQVLAFFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVID 171

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            M+    + IT E F ILMRR+  A +  +AI   + M  Y C+PD+  F  L+  LC+ 
Sbjct: 172 LMKARDVE-ITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRK 230

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
               EA + FD ++++F+P +  +T+L+ GWC+ G + EA+ V  +MK AG +P++  Y+
Sbjct: 231 RRASEAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYS 290

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            ++    + G++T A ++  EM   GC PN+ +Y  L++   +  + E+  + + +M+R 
Sbjct: 291 IVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRL 350

Query: 343 GCEADVVTYTTLISGFCK 360
           GCE D VTY  LI   CK
Sbjct: 351 GCEPDTVTYNFLIETHCK 368



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 114/220 (51%), Gaps = 2/220 (0%)

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           F  ++D   K      A  + D M+ R  + ++  F+ L+  + + G   EA +   +M+
Sbjct: 150 FNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRME 209

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
           D   +PD + ++ L+S   +  + ++A E    ++ K  +P+   YT L++  CR   + 
Sbjct: 210 DYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDK-FEPDVIVYTNLVRGWCRAGNIS 268

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA R F EM+ +G + +V TY+ +I   C+  +I R +++   M+  G  PN +TY  +M
Sbjct: 269 EAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLM 328

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             H K    E+ +++  +M+++GC PD   YN +I   CK
Sbjct: 329 RIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCK 368



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A +V+  MK    E  +  ++ L+  Y + G   +A      M    C P+  ++++LI 
Sbjct: 166 AWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILIS 225

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            LCR  +  EA   F  + +   E DV+ YT L+ G+C++  I     +   M   GI P
Sbjct: 226 ILCRKRRASEAQEFFDSL-KDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKP 284

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  TY  ++ +  +  ++    ++  EM   GC P+   YN ++R+  K G  ++ + V+
Sbjct: 285 NVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVY 344

Query: 442 NEMEAASLSPGTDSFVVMV 460
           N+M+     P T ++  ++
Sbjct: 345 NQMKRLGCEPDTVTYNFLI 363



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GF+     +N ++    ++     A+ ++  M+ +  +    ++++L++   R     EA
Sbjct: 142 GFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEA 201

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
             AF  ME   C+ D + ++ LIS  C+ R+     E  DS+  +   P+ + Y +++  
Sbjct: 202 IHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDK-FEPDVIVYTNLVRG 260

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             +   + E   + GEM+  G  P+V  Y++VI   C+ G++  A +V+ EM  A   P 
Sbjct: 261 WCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPN 320

Query: 453 TDSF 456
           + ++
Sbjct: 321 SITY 324



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  +++++R   + G   EA++ +N ME  +  P   +F +++     +    EA E+F 
Sbjct: 182 VETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFD 241

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            +  +     P       L+    RA  +  A+ V+  +   G + NVY ++I I SL  
Sbjct: 242 SLKDKF---EPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCR 298

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            G +  A     +M+DA   P   T+  LMR   K    +   ++  +++++  E
Sbjct: 299 CGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCE 353


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 206/453 (45%), Gaps = 43/453 (9%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           ++  +F+  +      R+   A  VL EM K G   D       L  LC+   V EAA L
Sbjct: 116 VSYNIFLAALSEQGHGRL---APPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAAL 172

Query: 232 FDEM-RERFKPSLR--HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
            + + R R    L    + +L+ G+CK   +  A  V+ +M   G   D+V YN+L++G+
Sbjct: 173 AEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGF 232

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
              G    A E+++ M+  G +PN  +YT LI   C+ + M+EA   +  M RSG   DV
Sbjct: 233 FHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDV 292

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           VT + L+ G C+  +    Y +   M + G+ PN +TY  ++ +  K     E + L+GE
Sbjct: 293 VTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGE 352

Query: 409 MRKIGCV-----------------------------------PDVSNYNVVIRLACKLGE 433
           M   G V                                   P+   Y V++   C+ G 
Sbjct: 353 MVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGN 412

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A  V  +ME  S+ P   +F  +++G + +GCL +A +Y ++M   G+  AP   T 
Sbjct: 413 IDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGI--APNVVTY 470

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++   + Q  E A DV+  ++ +G E N +     ++ L  NG+++ A +   DM +
Sbjct: 471 GTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDE 530

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             ++     +  LM GL K  N   A ++ +++
Sbjct: 531 RGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQEL 563



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 221/477 (46%), Gaps = 11/477 (2%)

Query: 117 AGNL-GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLIT 173
           AGN+ G    +   ++ + + +   + ++I  L K    G     M +M+     P ++T
Sbjct: 410 AGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVT 469

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
              +  L+  F   +  + A++V  +M   G E + FV   L++ L KN +++ A  LF 
Sbjct: 470 ---YGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFK 526

Query: 234 EMRERFKPSLRH--FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           +M ER    L H  +T+L+ G  K G +  A  V  ++ +    PD VVYN  ++    +
Sbjct: 527 DMDER-GLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTL 585

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           GK ++A   LKEMR  G +P+  +Y  +I A CR  K  +A +   EM+R+  + +++TY
Sbjct: 586 GKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITY 645

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           TTL+ G  ++  + +   +L+ M   G  P  LT+  ++ A       +  +E+   M  
Sbjct: 646 TTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMG 705

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G   D++ YN ++ + C  G  + A  V +EM    ++P T +F  ++ G      L  
Sbjct: 706 AGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDN 765

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   + +M+ +GL  +P   T   LL  L  A ++  A  V S +   G E N   + I 
Sbjct: 766 AFAIYAQMLHQGL--SPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDIL 823

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           +       +  EA     +M+    +P+  T+  LM    K      A E+  ++++
Sbjct: 824 VTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKR 880



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 165/365 (45%), Gaps = 14/365 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFV---ILMRRFASARMVKKAIE 195
           Y  L+  L K     A + + +E+ ++   P  +   VF+     + +F+ A+       
Sbjct: 540 YTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAK------S 593

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWC 254
            L EM   G EPD+  +  ++ A C+     +A KL  EM R   KP+L  +T+L+ G  
Sbjct: 594 FLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLL 653

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           + G + +AK++L +M  AGF P  + +  +L   +   +     E+ + M   G   +  
Sbjct: 654 EAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADIT 713

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            Y  L+  LC       A     EM   G   D +T+  LI G CKS  +D  + I   M
Sbjct: 714 VYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQM 773

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           + +G+ PN  T+  ++   E    + E   ++ +M+K+G  P+   Y++++    K    
Sbjct: 774 LHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNK 833

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA+ ++ EM +    P   ++  ++  F   G + +A E F EM  RG+L      T  
Sbjct: 834 VEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSS--TYD 891

Query: 495 ALLNS 499
            LLN 
Sbjct: 892 ILLNG 896



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 201/463 (43%), Gaps = 39/463 (8%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           AL+  L +  +F   +AL  EM K    P  +T   +  L+   A AR   +++ +L EM
Sbjct: 297 ALVDGLCRDGQFSEAYALFREMDKIGVAPNHVT---YCTLIDSLAKARRGSESLGLLGEM 353

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKL 259
              G   D  ++  L+D L K   ++EA  +    + +   P+   +T L+   C+ G +
Sbjct: 354 VSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNI 413

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A+ VL+QM++    P++V ++++++G  + G +  A + +++M+  G  PN  +Y  L
Sbjct: 414 DGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTL 473

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I    + +  E A   + +M   G EA+     +L++G  K+  I+    +   M +RG+
Sbjct: 474 IDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGL 533

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           L + + Y  +M    K   +    ++  E+ +    PD   YNV I   C LG+  EA +
Sbjct: 534 LLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKS 593

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM--------------VGRGLL 485
              EM    L P   ++  M+     +G   +A +  KEM              +  GLL
Sbjct: 594 FLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLL 653

Query: 486 SAPQYGTLKALLNSLLRA---------QKV----------EMAKDVWSCIVTKGCELNVY 526
            A      K LLN +  A         Q+V          ++  ++   ++  G   ++ 
Sbjct: 654 EAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADIT 713

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            +   +H L  +G  + A     +M+   + P   TF  L+ G
Sbjct: 714 VYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILG 756



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/494 (22%), Positives = 202/494 (40%), Gaps = 43/494 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+          A   ++E M+ +  +P ++T   +  L+  +   + + +A  + +
Sbjct: 225 YNSLVAGFFHSGDADAALEVVERMKADGVEPNVVT---YTALIGEYCKGKGMDEAFSLYE 281

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M + G  PD      L+D LC++    EA  LF EM +    P+   + +L+    K  
Sbjct: 282 GMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKAR 341

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  E+  +L +M   G   D+V+Y  L+    + GK+ +A ++L+  +     PN  +YT
Sbjct: 342 RGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYT 401

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           VL+ A CR   ++ A +  ++ME      +VVT++++I+G  K   + +  + +  M   
Sbjct: 402 VLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDS 461

Query: 378 GILPNQLTYLHIM------------------LAHE-----------------KKEELEEC 402
           GI PN +TY  ++                  + HE                 K   +E  
Sbjct: 462 GIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGA 521

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             L  +M + G + D  NY  ++    K G +  A  V  E+   +LSP    + V ++ 
Sbjct: 522 EALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINC 581

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G   EA  + KEM   GL   P   T   ++ +  R  K   A  +   +     +
Sbjct: 582 LCTLGKFSEAKSFLKEMRNTGL--EPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIK 639

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N+  +T  +  L   G VK+A     +M  A   P   T  ++++         +  EI
Sbjct: 640 PNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEI 699

Query: 583 TEKVRKMAAERQIT 596
            E +        IT
Sbjct: 700 HELMMGAGLHADIT 713



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 7/346 (2%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM- 304
           +   L    ++G    A  VL +M   G   D V  +  L G  + G + +A  L + + 
Sbjct: 118 YNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLV 177

Query: 305 RRKGCDP-NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           R +G D  +   +  LI   C+++ M  A      M   G   DVV Y +L++GF  S  
Sbjct: 178 RGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGD 237

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            D   E+++ M   G+ PN +TY  ++  + K + ++E   L   M + G +PDV   + 
Sbjct: 238 ADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSA 297

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++   C+ G+  EA  ++ EM+   ++P   ++  ++          E+     EMV RG
Sbjct: 298 LVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRG 357

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           ++      T  AL++ L +  K+E AKDV     +     N   +T+ + +    G++  
Sbjct: 358 VVMDLVMYT--ALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDG 415

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           A    L M +  V+P   TF+ ++ GL K   R    +  + +RKM
Sbjct: 416 AEQVLLQMEEKSVIPNVVTFSSIINGLVK---RGCLGKAADYMRKM 458



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 146/343 (42%), Gaps = 8/343 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I +  +  K      L++EM++   KP LIT    V+       A +VKKA  +L+
Sbjct: 610 YNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVV---GLLEAGVVKKAKFLLN 666

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE--MRERFKPSLRHFTSLLYGWCKE 256
           EM   G  P       +L A C  S   +      E  M       +  + +L++  C  
Sbjct: 667 EMASAGFAPTSLTHQRVLQA-CSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCH 725

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G    A  VL +M   G  PD + +N L+ G+ +   + +AF +  +M  +G  PN  ++
Sbjct: 726 GMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATF 785

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L+  L    ++ EA+    +M++ G E + +TY  L++G+ K         +   M+ 
Sbjct: 786 NTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVS 845

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G +P   TY  +M    K   + +  EL  EM++ G +   S Y++++    KL    E
Sbjct: 846 KGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIE 905

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
              +  +M+     P   +   M   F   G   EA    K +
Sbjct: 906 VRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRLLKTL 948


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 206/457 (45%), Gaps = 2/457 (0%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN + SY     LI +L K + +  V ++  +M         T +   L+  F + +   
Sbjct: 53  PNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSA-LIESFVNTQKPS 111

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
            A  VL  + K G   + + F  LL   C++    +A  LF  M R    P    + +++
Sbjct: 112 FAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVI 171

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK  +LVEAK +  +MK    +P+ V ++ L+ G+ + G + + F LL+EM + G +
Sbjct: 172 NGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLE 231

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            +   Y+ LI   C    +E     F EM R     +VVTY+ L++  CK +K     ++
Sbjct: 232 GDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQM 291

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD+M    + P+ + Y  +     K     + ++++  M K G  P+   YN +I   CK
Sbjct: 292 LDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCK 351

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G + +A+ +   M      P   ++  +V G  G G + EA +    ++ +     P  
Sbjct: 352 EGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDV 411

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                ++  L + +++  AK V+  +V +G   N+  + I I    S G + +A     D
Sbjct: 412 FAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKD 471

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            +D+ + P   T+  L+ GL K+    IA  +  K R
Sbjct: 472 AVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKR 508



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 218/451 (48%), Gaps = 10/451 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K ++      L +EM+    KP  +T   F  L+  F     V++   +L+
Sbjct: 167 YNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVT---FSALIDGFCKNGDVEEGFGLLE 223

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM K G E D FV+  L+   C    ++   +LF+EM R+   P++  ++ L+   CK+ 
Sbjct: 224 EMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQ 283

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  +L  M      PD+V Y  L  G ++ G+ +DA ++L  M ++G +PN  +Y 
Sbjct: 284 KWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYN 343

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+  ++++A      M + G + DVVTY+TL+ G C   KID   ++L+ ++ +
Sbjct: 344 AIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSK 403

Query: 378 --GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
              I P+   +  ++    K+  L     +   M + G   ++  YN++I      G+L 
Sbjct: 404 EFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLT 463

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A+ +W +   + +SP   ++ V+++G      L  A   F +    G  + P       
Sbjct: 464 KALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASG--TRPTVSEYNT 521

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+ SL R   VE A++++  +     + +V ++ I I      G V+ A    L+M++ +
Sbjct: 522 LMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMN 581

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           ++P   TF+ L+    KL     AA + E++
Sbjct: 582 LVPDNITFSILINRFLKLGQLDEAASLYERM 612



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 176/377 (46%), Gaps = 15/377 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L   LSK  +      +++ M  R E+P  +T   +  ++        V  A+ +L+
Sbjct: 307 YTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVT---YNAIINGLCKEGRVDDALGILE 363

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER---FKPSLRHFTSLLYGWCK 255
            M K G +PD   +  L+  LC    + EA  L + +  +    KP +  F  ++   CK
Sbjct: 364 TMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCK 423

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + +L  AK V   M + GF  +IV YN L+ GY   GK+T A EL K+    G  PNA +
Sbjct: 424 QRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAAT 483

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           YTVLI  LC+M+ +  A   F +   SG    V  Y TL++  C+   +++   +   M 
Sbjct: 484 YTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMR 543

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
                P+ +++  I+    K  ++E   EL+ EM  +  VPD   ++++I    KLG+L 
Sbjct: 544 NANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLD 603

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA +++  M +    P    F  ++ G+  +G   +     ++M  + ++       L +
Sbjct: 604 EAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVV-------LDS 656

Query: 496 LLNSLLRAQKVEMAKDV 512
            L S + A    M+KDV
Sbjct: 657 KLTSTILACLCNMSKDV 673



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+ SL +         L +EMR     P +++   F I++     A  V+ A E+L 
Sbjct: 519 YNTLMASLCRESSVEQARNLFQEMRNANHDPDVVS---FNIIIDGTLKAGDVESAKELLL 575

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
           EM      PD   F  L++   K   + EAA L++ M      P    F SLL G+  +G
Sbjct: 576 EMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKG 635

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           K  +   +L QM D     D  + + +L+    M K  D  ++L +  +
Sbjct: 636 KTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKILPKFSQ 684


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 178/349 (51%), Gaps = 5/349 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTS 248
           +KKA+   D++   G + D+  +G L++ LCK    K  A+L  ++     KP +  + +
Sbjct: 143 IKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNT 202

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CK   L +A  V  +M   G  PD+V Y  L+ G+  MG + +AF LL EM+ K 
Sbjct: 203 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKN 262

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            +PN  ++ +LI AL +  KM+EA      M ++  + DV TY +LI G+    ++    
Sbjct: 263 INPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAK 322

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +  SM QRG+ P+   Y +++    K + ++E + L  EM+    +PD+  YN +I   
Sbjct: 323 YVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGL 382

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSA 487
           CK   L+ A+ +   M+   + P   S+ +++ G    G L +A E F+ ++ +G  L+ 
Sbjct: 383 CKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNV 442

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             Y     L+N L +A   + A D+ S +  KGC  +   + I I +LF
Sbjct: 443 HAY---TVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALF 488



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 196/449 (43%), Gaps = 38/449 (8%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
           A + LM  MR   P    T  F  ++    + +     I +  +    G  PD      L
Sbjct: 43  ASFNLMLLMRPPPP----TFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSIL 98

Query: 216 LDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  C  + +  A  +F  + +R F P+     +L+ G C  G++ +A Y   Q+   GF
Sbjct: 99  INCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGF 158

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           + D V Y  L++G  + G+      LL+++      P+   Y  +I +LC+ + + +A  
Sbjct: 159 QLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACD 218

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            + EM   G   DVVTYTTLI GFC    +   + +L+ M  + I PN  T+  ++ A  
Sbjct: 219 VYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALS 278

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+ +++E   L+  M K    PDV  YN +I     + E+K A  V+  M    ++P   
Sbjct: 279 KEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQ 338

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS---------------------------- 486
            +  M++G      + EA   F+EM  + ++                             
Sbjct: 339 CYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRM 398

Query: 487 -----APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
                 P   +   LL+ L ++ ++E AK+++  ++ KG  LNV+A+T+ I+ L   G  
Sbjct: 399 KEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFF 458

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            EA      M D   MP   TF  ++R L
Sbjct: 459 DEALDLKSKMEDKGCMPDAVTFDIIIRAL 487



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 172/348 (49%), Gaps = 6/348 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K  +  AV  L+ ++     KP ++   ++  ++      +++  A +V  
Sbjct: 165 YGTLINGLCKTGETKAVARLLRKLEGHSVKPDVV---MYNTIINSLCKNKLLGDACDVYS 221

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+   C    +KEA  L +EM+ +   P++  F  L+    KEG
Sbjct: 222 EMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEG 281

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK +L  M  A  +PD+  YN+L+ GY  + ++  A  +   M ++G  P+   YT
Sbjct: 282 KMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYT 341

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LC+ + ++EA   F EM+      D+VTY +LI G CK+  ++R   +   M ++
Sbjct: 342 NMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQ 401

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI P+  +Y  ++    K   LE+  E+   +   G   +V  Y V+I   CK G   EA
Sbjct: 402 GIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEA 461

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +++ ++ME     P   +F +++     +    +A +  +EM+ RGLL
Sbjct: 462 LDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLL 509



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 2/297 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P    +NN+LS             L K+    G  P+  + ++LI   C    +  A   
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F  + + G   + +T  TLI G C   +I +     D ++ +G   +Q++Y  ++    K
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             E +    L+ ++      PDV  YN +I   CK   L +A +V++EM    +SP   +
Sbjct: 175 TGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 234

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++HGF   G L EA     EM  + +   P   T   L+++L +  K++ AK + + 
Sbjct: 235 YTTLIHGFCIMGHLKEAFSLLNEMKLKNI--NPNVCTFNILIDALSKEGKMKEAKILLAV 292

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           ++    + +V+ +   I   F    VK A      M    V P    +  ++ GL K
Sbjct: 293 MMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCK 349


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 191/369 (51%), Gaps = 8/369 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+ +    + L++EM  +  KP ++   ++ +++  F    +  KA ++  
Sbjct: 192 YGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIV---IYNMIIDSFCKDELTCKARDLYL 248

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++   G +PD   +  L+   C+     E  +L  EM  +   P++  F  L+  +C++G
Sbjct: 249 KIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKG 308

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K++EA+ +   M   G +PDIV +N L+SG+   G + +A +L   +  +G  P+  SYT
Sbjct: 309 KMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYT 368

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+ ++++EA   F EM       D+V Y++LI G CKS +I   +E+  ++   
Sbjct: 369 ILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINND 428

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +TY  ++ A  K ++++  +EL   M   G  P V  YN++I   CK   ++EA
Sbjct: 429 GPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREA 488

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +N+ + M++ +L+P + ++  +  G    G + +A E FK M   G        T   LL
Sbjct: 489 MNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGG--PPVDVATYNVLL 546

Query: 498 NSLLRAQKV 506
           ++  +AQ V
Sbjct: 547 DAFCKAQDV 555



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 186/416 (44%), Gaps = 38/416 (9%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           AI +L +M   G  P  F     ++  C    +  A  +   + +R ++P+    T+++ 
Sbjct: 103 AISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMK 162

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C  G++ +A      +   G   D V Y  L++G  ++G+  DAF+LL+EM  +   P
Sbjct: 163 GLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKP 222

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N   Y ++I + C+ E   +A   ++++   G + D++TYT+LI GFC++ +     +++
Sbjct: 223 NIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLM 282

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG------------------------ 407
             M+ + I PN  T+  ++ A  +K ++ E   +                          
Sbjct: 283 CEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLH 342

Query: 408 ----EMRKI-------GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
               E RK+       G +PDV +Y ++I   CK   + EAV+++NEM   ++      +
Sbjct: 343 GNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLY 402

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++ G    G +  A E F  +   G    P   T   L+++  + Q ++M  +++  +
Sbjct: 403 SSLIDGLCKSGRISYAWELFSTINNDG--PPPNVITYNILIDAFCKIQDIDMGIELFKLM 460

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             KG    V  + I I+    +  ++EA +    M   ++ P   T+  L  GL K
Sbjct: 461 CGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCK 516



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 166/352 (47%), Gaps = 5/352 (1%)

Query: 223 SSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           + + +A  LF+ +   +  PS+  F +++    K      A  +L QM   G  P I   
Sbjct: 63  NGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTL 122

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           +  ++ Y  +G+M  AF +L  + ++G  PN  + T +++ LC   ++++A      +  
Sbjct: 123 SIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAA 182

Query: 342 SGCEADVVTYTTLISGFCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            G   D V Y TLI+G CK  R ID  +++L  M  + + PN + Y  I+ +  K E   
Sbjct: 183 QGMLLDEVCYGTLINGLCKIGRSIDA-FQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTC 241

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +  +L  ++  +G  PD+  Y  +IR  C+ G+  E   +  EM   +++P   +F V++
Sbjct: 242 KARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLI 301

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
             F  +G +IEA   F  MV RG    P   T   L++       V  A+ ++  +  +G
Sbjct: 302 DAFCRKGKMIEAQGMFNLMVKRG--QQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERG 359

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +V+++TI I        + EA S   +M   +++     ++ L+ GL K
Sbjct: 360 ILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCK 411


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 217/481 (45%), Gaps = 26/481 (5%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGA--------------------VWALME 162
           R++ W S+   + H    + +++  L + R F                      V  ++ 
Sbjct: 96  RFFHWVSRTHFFKHDMSCFVSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLS 155

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           E+        T   F  L+ +     M     +V  EM   G  P+ F F  ++  LC  
Sbjct: 156 EINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNK 215

Query: 223 SSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
             V+EA  +   +      P    +TSL+ G CK G L  A  +  +M   G +P+ V Y
Sbjct: 216 GKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTY 275

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           + L++G    G++ +A ++L+EM  KG +P  ++YT+ I +LC   +  EA +   +M++
Sbjct: 276 SALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKK 335

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            GC  +V TYT LISG  +  K +    +   M+  G++P  +TY  ++     +   E 
Sbjct: 336 RGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFET 395

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            + +   M     +P+   YNV+I+  C +G +++A  ++++M  A  SP   ++ +++H
Sbjct: 396 ALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIH 455

Query: 462 GFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            +  QG +  A    + M G GL L    Y     L++   R  K+E A  +++ +V  G
Sbjct: 456 IYFKQGYMNNAMRLLEMMKGNGLKLDTWTYAN---LISGFSRGGKLEHAFSLFNEMVEHG 512

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
              NV  +   I+   +   V +A +    M+++  +P   T+  ++ G  K  NR   A
Sbjct: 513 ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKT-NRISEA 571

Query: 581 E 581
           E
Sbjct: 572 E 572



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 184/400 (46%), Gaps = 8/400 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y ALI  L    +F     + E M      L  TE + ++++ F S   ++KA  + D+M
Sbjct: 380 YSALINQLYVEGRFETALTIFEWMLSHD-SLPNTETYNVIIKGFCSIGYIQKATAIFDQM 438

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K G  P+   +  ++    K   +  A +L + M+    K     + +L+ G+ + GKL
Sbjct: 439 LKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKL 498

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +  +M + G  P++V YN +++GY  + K+ DA  L  +M   G  P++ +Y ++
Sbjct: 499 EHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMM 558

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I    +  ++ EA     +M + G   +V+TYT+ I G CK+ +    ++I   M +R  
Sbjct: 559 ISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDY 618

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  TY  ++    ++ + E+   L+ +    GC P+V  Y  ++R  C  G   EA  
Sbjct: 619 FPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQ 674

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +   M+   L P  + +  ++ G      +  A + F  MV  G    P     KAL+ +
Sbjct: 675 LVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGF--QPCLSDYKALICA 732

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           L +A   + A+ ++  ++ K    +   WT+ +  L   G
Sbjct: 733 LCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEG 772



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 203/469 (43%), Gaps = 18/469 (3%)

Query: 107 TERVINRCGDAGNLGYRYYMWASK-----QPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           T  +I  C + GNL   + M+         PN V     Y ALI  L    +      ++
Sbjct: 241 TSLIIGHCKN-GNLDLAFEMFDRMVKDGCDPNSV----TYSALINGLCSEGRLEEAMDML 295

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           EEM  +K    T   + I +     A    +A+++L +M K GC P+   +  L+  L +
Sbjct: 296 EEM-IDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSR 354

Query: 222 NSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           +   + A  ++ +M  +   P+   +++L+     EG+   A  +   M      P+   
Sbjct: 355 DGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTET 414

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN ++ G+  +G +  A  +  +M + G  PN  +Y ++I    +   M  A R    M+
Sbjct: 415 YNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMK 474

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            +G + D  TY  LISGF +  K++  + + + M++ GI PN +TY  I+  +    +++
Sbjct: 475 GNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVD 534

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           + + L  +M + G VP    YN++I    K   + EA N   +M    L P   ++   +
Sbjct: 535 DALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFI 594

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G    G    A + F EM  R     P   T  +L++ L +  + E A+     ++  G
Sbjct: 595 DGLCKNGRTSLAFKIFHEMKKRDYF--PNLCTYSSLIDGLCQEGQAEDAER----LLDDG 648

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           CE NV  +T  +  L   G   EA      M    + P  + +  L+ G
Sbjct: 649 CEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVG 697



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 32/312 (10%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V     Y A+I     + K     AL  +M  E   + ++  + +++  F+    +
Sbjct: 514 SPNVV----TYNAIINGYLTVAKVDDALALFWKMV-ESGNVPSSGTYNMMISGFSKTNRI 568

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A     +M K G  P+   +   +D LCKN     A K+F EM++R + P+L  ++SL
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSL 628

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G C+EG+  +A+ +L    D G EP++  Y  L+ G    G+  +A +L++ M++KG 
Sbjct: 629 IDGLCQEGQAEDAERLL----DDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGL 684

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS--RKIDRC 367
            P+   Y  L+   C+  ++E A + F  M  +G +  +  Y  LI   CK+  R+  +C
Sbjct: 685 QPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQC 744

Query: 368 Y-----------------EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
                              +LD +++ G     L  LH+M +       +  V L  E+ 
Sbjct: 745 MFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLARELS 804

Query: 411 KIGC---VPDVS 419
            +GC   +P +S
Sbjct: 805 ALGCSIEIPQIS 816


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 215/417 (51%), Gaps = 3/417 (0%)

Query: 154 FGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212
           F  V +L+  + + + P + T  ++  ++     ++++ KA+   +EM   G      +F
Sbjct: 72  FFTVPSLLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIF 131

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
             LL +L +++  ++A   F+E++ER K  +  F  ++ G C+ G L ++  +L  ++D 
Sbjct: 132 NSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDM 191

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  P++V+Y  L+ G  + G +  A     +M   G   N  ++TVLI  L +    ++ 
Sbjct: 192 GLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDG 251

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
              F +M+ +G   ++ TY  L++ +C   KI R +++ D M +RG+  N +TY  ++  
Sbjct: 252 FDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGG 311

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             ++E + E  +L+ +M+K    P++  YN +I   C +G L +A ++ +++++  LSP 
Sbjct: 312 MCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPS 371

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++ +++ G+   G      +  +EM GRG+  +P   T   L+++ +R Q++E A  +
Sbjct: 372 LVTYNILIEGYSKAGNWKGVADLAREMEGRGI--SPSKVTCTVLIDAYVRLQEMEKAFQI 429

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +S +   G   +VY + + IH L   G++KE+      M +  V P    +  ++ G
Sbjct: 430 YSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHG 486



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 192/408 (47%), Gaps = 40/408 (9%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +++ +L+ SL +   F   W    E+ KE+ +      F I+++       + K+ ++L 
Sbjct: 129 NIFNSLLGSLVRSNCFEKAWLFFNEL-KERVKF-DVYSFGIMIKGCCENGNLDKSFQLLG 186

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH-FTSLLYGWCKEG 257
            +   G  P+  ++  L+D  CKN  ++ A   FD+M E    + ++ FT L+ G  K+G
Sbjct: 187 LLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKG 246

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              +   +  +MK  G  P++  YN L++ Y   GK+  AF+L  EMR +G + N  +Y 
Sbjct: 247 LKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYN 306

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS---- 373
            LI  +CR E++ EA +   +M+++    +++TY TLI GFC    +D+   +LD     
Sbjct: 307 TLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSN 366

Query: 374 -------------------------------MIQRGILPNQLTYLHIMLAHEKKEELEEC 402
                                          M  RGI P+++T   ++ A+ + +E+E+ 
Sbjct: 367 GLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKA 426

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            ++   M K G VPDV  Y V+I   C  G +KE+  ++  M    + P    +  M+HG
Sbjct: 427 FQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHG 486

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           +  +     A    +EM  +GL+  P   +  +++  L +  K E A+
Sbjct: 487 YCKEDNSYRALRLLREMEAKGLV--PNVASYSSIIGVLCKDGKWEEAE 532



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 187/373 (50%), Gaps = 17/373 (4%)

Query: 91  LELALQHSGVVLRPGLTERV------INRCGDAGNLG-YRYYMWASKQPNYVHSYDVYRA 143
           L+ + Q  G++   GL+  V      I+ C   G++   R +     +   V +   +  
Sbjct: 178 LDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTV 237

Query: 144 LIKSLSK--MRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           LI  L K  ++K G  + L E+M+     P L T   +  LM  +     + +A ++ DE
Sbjct: 238 LINGLFKKGLKKDG--FDLFEKMKINGLFPNLYT---YNCLMNEYCGEGKICRAFDLFDE 292

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G E +   +  L+  +C+   V EA KL D+M++    P+L  + +L+ G+C  G 
Sbjct: 293 MRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGN 352

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L +A  +L Q+K  G  P +V YN L+ GY++ G      +L +EM  +G  P+  + TV
Sbjct: 353 LDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTV 412

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI A  R+++ME+A + +  ME+ G   DV  Y  LI G C    +    ++  SM +  
Sbjct: 413 LIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMH 472

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+ + Y  ++  + K++     + L+ EM   G VP+V++Y+ +I + CK G+ +EA 
Sbjct: 473 VEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAE 532

Query: 439 NVWNEMEAASLSP 451
            + ++M    L P
Sbjct: 533 VLLDKMIELQLKP 545


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 249/534 (46%), Gaps = 57/534 (10%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNY 134
           EK + I+++  S+           G +       +VI    +A  +   + ++   + N+
Sbjct: 462 EKAYSIIREMMSK-----------GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510

Query: 135 VHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           V   DV  Y  LI S  K+          +EM ++   P ++T   +  L+  +  AR +
Sbjct: 511 VVP-DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVT---YTALIHAYLKARKM 566

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER---------FK- 240
             A E+ + M   GC P+   +  L+D  CK+  +++A +++  MR           FK 
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 241 -------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
                  P++  + +L+ G CK  K+ EA+ +L  M   G EP+ +VY+ L+ G+ ++GK
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A  +  +M  +G  PN  +Y+ LI  L + ++++ A +    M  + C  +V+ YT 
Sbjct: 687 LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I G CK  K D  Y ++  M ++G  PN +TY  ++    K  ++++C+ELM +M   G
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF-----LGQGC 468
           C P+   Y V+I   C  G L +A  + +EM+          +  ++ GF     +  G 
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGL 866

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA----KDVWSCIVTKGCELN 524
           L E  E          ++ P     + L++S  +A ++E+A    K + SC      + +
Sbjct: 867 LDEIAEN---------VAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKD 917

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
           +Y+  I   SL S   V +A     DM+    +P+   F  L++GL ++ NR +
Sbjct: 918 LYSSLIESLSLASK--VDKAFELYADMIKRGGIPELSIFFYLVKGLIRI-NRTL 968



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 209/464 (45%), Gaps = 30/464 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     YR L+    + R+ G    ++  M  E     +  +F  L+  +  +    
Sbjct: 332 PNVV----TYRILLCGCLRKRQLGRCKRILSMMITEGCY-PSRRIFNSLIHAYCRSGDYS 386

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE------AAKLFDEMRE-RFKPSLR 244
            A ++L +M   GC+P   V+  L+  +C N  +        A K + EM +     +  
Sbjct: 387 YAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKV 446

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           + ++L    C  GK  +A  ++ +M   GF PD   Y+ ++       K+ +AF L +EM
Sbjct: 447 NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +     P+  +YT+LI + C++  +++A + F EM R GC  +VVTYT LI  + K+RK+
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS----- 419
               E+ + M+  G +PN +TY  ++  H K  ++E+  ++   MR    +PDV      
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 420 -----------NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
                       Y  ++   CK  ++KEA ++ + M      P    +  ++ GF   G 
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           L EA   F +M  RG    P   T  +L++ L + +++++A  V S ++   C  NV  +
Sbjct: 687 LDEAQMVFTKMSERGY--GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIY 744

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           T  I  L   G   EA      M +    P   T+  ++ G  K
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 217/491 (44%), Gaps = 46/491 (9%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           LG ++++WA +Q  Y H+  VY AL++ L            + E+R E  +++   + V+
Sbjct: 144 LGVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVL 203

Query: 180 ----------------------------------LMRRFASARMVKKAIEVLDEMPKYGC 205
                                             L+R F  A  +  A  V  EM   G 
Sbjct: 204 IRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGF 263

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
             D +  GC +  LCK    +EA  L +  +E FK     +T ++ G C+     EA   
Sbjct: 264 NMDGYTLGCFVHLLCKAGRWREALALIE--KEEFKLDTVIYTQMISGLCEASLFEEAMDF 321

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L +M+ +   P++V Y  LL G  +  ++     +L  M  +GC P+   +  LI A CR
Sbjct: 322 LSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCR 381

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-------SMIQRG 378
                 A +   +M   GC+   V Y  LI G C + K+    ++L+        M+   
Sbjct: 382 SGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPS-LDVLELAEKAYGEMLDAH 440

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++ N++   ++        + E+   ++ EM   G +PD S Y+ VI L C   ++  A 
Sbjct: 441 VVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAF 500

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++ EM++  + P   ++ +++  F   G L +A ++F EMV  G   AP   T  AL++
Sbjct: 501 LLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIH 558

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           + L+A+K+  A +++  ++++GC  NV  +T  I     +G +++AC     M     +P
Sbjct: 559 AYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIP 618

Query: 559 QPDTFAKLMRG 569
             D + K+  G
Sbjct: 619 DVDMYFKIDDG 629



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 201/471 (42%), Gaps = 67/471 (14%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
            +  L K  ++    AL+E   KE+ +L T  ++  ++     A + ++A++ L  M   
Sbjct: 273 FVHLLCKAGRWREALALIE---KEEFKLDTV-IYTQMISGLCEASLFEEAMDFLSRMRSS 328

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEA 262
            C P+   +  LL    +   +    ++   M  E   PS R F SL++ +C+ G    A
Sbjct: 329 SCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYA 388

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSG-------------------YAQM------------ 291
             +L +M D G +P  VVYN L+ G                   Y +M            
Sbjct: 389 YKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNV 448

Query: 292 ----------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                     GK   A+ +++EM  KG  P+ ++Y+ +I  LC   K++ A   F EM+ 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           +    DV TYT LI  FCK   + +  +  D M++ G  PN +TY  ++ A+ K  ++  
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSS 568

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             EL   M   GC+P+V  Y  +I   CK G++++A  ++  M   +  P  D       
Sbjct: 569 ANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDM------ 622

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                        YFK  +  G +  P   T  AL++ L +A KV+ A+D+   +  +GC
Sbjct: 623 -------------YFK--IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           E N   +   I      G + EA      M +    P   T++ L+  L K
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFK 718


>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 181/381 (47%), Gaps = 10/381 (2%)

Query: 73  DVEKIFRILKK----FHSRLPKLELALQHSGV----VLRPGLTERVINRCGDAGNLGYRY 124
           D EK+  ILK+    F + L   EL L+ SGV    VL+  L  + +        LGY++
Sbjct: 78  DAEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKLGYKF 137

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           ++W+ +  NY H+ + Y  ++K  ++  +F A+W +++EM  EK   +T   F+IL+   
Sbjct: 138 FIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEM-TEKGYPVTARTFMILICTC 196

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSL 243
             A + K+ +E   +   +   P +  +  +L  L      K    ++D+M  +   P +
Sbjct: 197 GEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDI 256

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             +  LL+  CK GKL +   +L +M   GF PD   YN LL    +  K   A  LL  
Sbjct: 257 LTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNH 316

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR  G  PN   +T LI  L R   ++     F E+  +GC  DVV YT +I+ F ++ +
Sbjct: 317 MREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQ 376

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            ++     D MI +G LPN  TY  ++       + +E   ++ EM   GC P+   Y+ 
Sbjct: 377 HEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYST 436

Query: 424 VIRLACKLGELKEAVNVWNEM 444
           ++      G+L EA  V   M
Sbjct: 437 LVSYLRNAGKLGEAHKVIKRM 457



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 28/291 (9%)

Query: 105 GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           GL +RV+ R   +    +R          Y HSY+   A++  L  ++++  +  + ++M
Sbjct: 200 GLAKRVVERFIKSKTFNFR---------PYKHSYN---AILHGLVIVKQYKLIGWVYDQM 247

Query: 165 --RKEKPQLITTEVFVILMRRFASARMVK--KAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
                 P ++T  V +     F+S ++ K  +   +LDEM + G  PD   +  LL  L 
Sbjct: 248 LLDDHSPDILTYNVLL-----FSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLG 302

Query: 221 KNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           K      A  L + MRE  F P++ HFT+L+ G  + G L   KY   ++ + G  PD+V
Sbjct: 303 KGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVV 362

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  +++ + + G+   A     EM  KG  PN  +Y  +I+  C + K +EA     EM
Sbjct: 363 CYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEM 422

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           E  GC  + + Y+TL+S    + K+   ++++  M++ G       Y H+M
Sbjct: 423 ESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKRMVENG------QYAHLM 467



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 131/300 (43%), Gaps = 4/300 (1%)

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           H    ++  C+E K +    VL +M + G+      +  L+    + G      E   + 
Sbjct: 155 HIIMKIFAECEEFKAMWR--VLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKS 212

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
           +     P  +SY  ++  L  +++ +     + +M       D++TY  L+   CK  K+
Sbjct: 213 KTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKL 272

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           D+ + +LD M ++G  P+  TY  ++    K ++    + L+  MR++G  P+V ++  +
Sbjct: 273 DQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTL 332

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I    + G L      ++E+      P    + VM+  F   G   +A  +F EM+ +G 
Sbjct: 333 INGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQ 392

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  P   T  +++       K + A  + S + ++GC  N   ++  +  L + G + EA
Sbjct: 393 L--PNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEA 450



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 5/326 (1%)

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y+ ++  +A+  +    + +L EM  KG    A ++ +LI         +     F++ +
Sbjct: 154 YHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSK 213

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
                    +Y  ++ G    ++      + D M+     P+ LTY  ++ +  K  +L+
Sbjct: 214 TFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLD 273

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +   L+ EM + G  PD   YN+++ +  K  +   A+N+ N M      P    F  ++
Sbjct: 274 QFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLI 333

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           +G    G L +AC+YF + +G      P       ++ S   A + E A+  +  ++ KG
Sbjct: 334 NGLSRAGNL-DACKYFFDELGNNG-CIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG 391

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
              NV+ +   I      G  KEA S   +M      P    ++ L+  L+   N     
Sbjct: 392 QLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLR---NAGKLG 448

Query: 581 EITEKVRKMAAERQITFKMYKRRGER 606
           E  + +++M    Q    M K +G R
Sbjct: 449 EAHKVIKRMVENGQYAHLMTKFKGYR 474



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 10/262 (3%)

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
            NSY ++++     E+ +   R   EM   G      T+  LI    ++    R  E   
Sbjct: 151 VNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFI 210

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
                   P + +Y  I+      ++ +    +  +M      PD+  YNV++  +CKLG
Sbjct: 211 KSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLG 270

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG----CLIEACEYFKEMVGRGLLSAP 488
           +L +   + +EM     SP   ++ ++++  LG+G      +    + +E VG G    P
Sbjct: 271 KLDQFHRLLDEMARKGFSPDFHTYNILLY-VLGKGDKPLAALNLLNHMRE-VGFG----P 324

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                  L+N L RA  ++  K  +  +   GC  +V  +T+ I S    G  ++A ++ 
Sbjct: 325 NVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFF 384

Query: 549 LDMMDADVMPQPDTFAKLMRGL 570
            +M+    +P   T+  ++RG 
Sbjct: 385 DEMIMKGQLPNVFTYNSMIRGF 406


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 231/457 (50%), Gaps = 14/457 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+++L   R+ G    L+ +M+    +P ++T   +  L+R    A  V KA+E+L 
Sbjct: 116 YTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVT---YGTLIRGLCDAADVDKAVELLR 172

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G EP+  V+ CLL   CK    +  +K+F+EM  R  +P +  +T L+   C+EG
Sbjct: 173 EMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREG 232

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ +A  V+ +M + G EP++V YN L++   + G + +A  L   M  KG   +A +Y 
Sbjct: 233 KVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYN 292

Query: 318 VLIQALCRMEKMEEANRAFVEM--ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
            LI  L  + +M+EA     EM    +  E +VVT+ ++I G CK+ ++ + +++ D M 
Sbjct: 293 TLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMA 352

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G   N +T+  ++    +  ++++ +ELM EM   G  PD   Y+++I   CK+ ++ 
Sbjct: 353 ENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVD 412

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A ++ ++M    + P    ++ ++     QG + +A  +F EM     L    Y T   
Sbjct: 413 RAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYST--- 469

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +++   R +  + A++    ++ +G   +   +++ I+   ++G +  A      M  + 
Sbjct: 470 MIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASG 529

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
            +P    F  L++G     + +   ++ E +R+M A+
Sbjct: 530 FVPDVAVFDSLIKGYGAKGDTE---KVLELIREMTAK 563



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 200/398 (50%), Gaps = 6/398 (1%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T   +  LMR   + R   +A+ +L +M   G  PD   +G L+  LC  + V +A +L 
Sbjct: 112 TAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELL 171

Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            EM E   +P++  ++ LL G+CK G+      V  +M   G EPD+V+Y  L+    + 
Sbjct: 172 REMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCRE 231

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           GK+  A +++ +M  +G +PN  +Y VLI ++C+   ++EA      M   G   D VTY
Sbjct: 232 GKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291

Query: 352 TTLISGFCKSRKIDRCYEILDSMI--QRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            TLI+G     ++D    +L+ MI  +  + PN +T+  ++    K   + +  ++   M
Sbjct: 292 NTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMM 351

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + GC  ++  +N++I    ++ ++K+A+ + +EM ++ L P + ++ ++++GF     +
Sbjct: 352 AENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQV 411

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A     +M   G+   P+      LL +L     +E A++ +   + K C+L+V A++
Sbjct: 412 DRAESLLSKMRRDGI--EPELVHYIPLLAALCEQGMMEQARNFFD-EMHKNCKLDVVAYS 468

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
             IH        K A  +   M+D  ++P   T++ L+
Sbjct: 469 TMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLI 506



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 201/455 (44%), Gaps = 52/455 (11%)

Query: 177 FVILMRRF---ASARM--------VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
             +L+RR    ASAR+        + ++  +L  +P      D   +  +L ALC+    
Sbjct: 38  LAVLLRRGRAEASARLNRLLRLVPLPESPALLSSLPSV---RDAVSYNTVLAALCRQGGC 94

Query: 226 KEAAK-LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            +AA  L   M    +P+   +T+L+   C E +  +A  +L  M+ +G  PD+V Y  L
Sbjct: 95  LDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTL 154

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G      +  A ELL+EM   G +PN   Y+ L+Q  C+  + E  ++ F EM   G 
Sbjct: 155 IRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGI 214

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           E DVV YT LI   C+  K+ +  +++D M++RG+ PN +T                   
Sbjct: 215 EPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVT------------------- 255

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
                           YNV+I   CK G +KEA+++ N M    ++    ++  ++ G  
Sbjct: 256 ----------------YNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLS 299

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           G   + EA    +EM+    +  P   T  ++++ L +  ++  A  V   +   GC  N
Sbjct: 300 GVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACN 359

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +  + + I  L     VK+A     +M  + + P   T++ L+ G  K++    A  +  
Sbjct: 360 LVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLS 419

Query: 585 KVRKMAAERQIT--FKMYKRRGERDLKEKAKKQVD 617
           K+R+   E ++     +     E+ + E+A+   D
Sbjct: 420 KMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFD 454



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 187/372 (50%), Gaps = 15/372 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           +PN V    VY  L++   K  ++  V  + EEM  R  +P ++   ++  L+       
Sbjct: 180 EPNVV----VYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVV---MYTGLIDSLCREG 232

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            VKKA +V+D+M + G EP+   +  L++++CK  SVKEA  L + M E+        + 
Sbjct: 233 KVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYN 292

Query: 248 SLLYGWCKEGKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +L+ G     ++ EA  +L +M   +   EP++V +N+++ G  + G+M  AF++   M 
Sbjct: 293 TLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMA 352

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC  N  ++ +LI  L R+ K+++A     EM  SG E D  TY+ LI+GFCK  ++D
Sbjct: 353 ENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVD 412

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           R   +L  M + GI P  + Y+ ++ A  ++  +E+      EM K  C  DV  Y+ +I
Sbjct: 413 RAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-NCKLDVVAYSTMI 471

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             AC+L + K A      M    L P + ++ ++++ F   G L  A    K+M   G +
Sbjct: 472 HGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFV 531

Query: 486 SAPQYGTLKALL 497
             P      +L+
Sbjct: 532 --PDVAVFDSLI 541



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 40/227 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V    V   L K+  +MR+   V  +M E       L+T   F +L+        V
Sbjct: 322 EPNVVTFNSVIHGLCKT-GRMRQAFQVRDMMAE-NGCACNLVT---FNLLIGGLLRVHKV 376

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSL 249
           KKA+E++DEM   G EPD F +  L++  CK   V  A  L  +MR +  +P L H+  L
Sbjct: 377 KKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPL 436

Query: 250 LYGWCKEGKLVEAKYV----------------------------------LVQMKDAGFE 275
           L   C++G + +A+                                    L  M D G  
Sbjct: 437 LAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLI 496

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           PD V Y+ L++ +A  G +  A  +LK+M   G  P+   +  LI+ 
Sbjct: 497 PDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKG 543


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 201/443 (45%), Gaps = 52/443 (11%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F ILM+ F S   +  A+    ++ K G  P    F  LL  LC    + EA  LF +M 
Sbjct: 119 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM- 177

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
              KP++  FT+L+ G C+EG++VEA  +L +M + G +P+ + Y  ++ G  +MG    
Sbjct: 178 --CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVS 235

Query: 297 AFELLKEMRR-KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           A  LL++M       PN   Y  +I  L +  +  +A+  F+EM+      D+VTY  +I
Sbjct: 236 ALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMI 295

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKI- 412
           +GFC S +     ++L  M++R I P+ +T+  ++ A  K+ +  E  EL  EM  R I 
Sbjct: 296 NGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSII 355

Query: 413 --------------------------------GCVPDVSNYNVVIRLACKLGELKEAVNV 440
                                           GC PD+  +N +I   C+   + + + +
Sbjct: 356 PSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKL 415

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
            +EM  A L   T ++  ++HGF   G L  A +  +EM+  G+   P   T   LL+ L
Sbjct: 416 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGV--CPNVVTCNTLLDGL 473

Query: 501 LRAQK----VEMAK-------DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
               K    +EM K       D+ +     G E +V  + I I  L + G   EA     
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYE 533

Query: 550 DMMDADVMPQPDTFAKLMRGLKK 572
           +M    ++P   T++ ++ GL K
Sbjct: 534 EMPHRGIVPDTITYSSMIDGLCK 556



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 218/467 (46%), Gaps = 53/467 (11%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T   F  LM        V +A+ +LD M + G +P++  +G ++D +CK      
Sbjct: 179 KPNVVT---FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVS 235

Query: 228 AAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M E     P++  + +++ G  K+G+  +A  + ++M++    PDIV YN ++
Sbjct: 236 ALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMI 295

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           +G+   G+ +DA +LL+EM  +  +P+  +++ LI A  +  K  EA   + EM      
Sbjct: 296 NGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSII 355

Query: 346 ADVVTYTTLISGFCK-----------------------------------SRKIDRCYEI 370
              VTY+++I GFCK                                   ++++D   ++
Sbjct: 356 PSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKL 415

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M + G++ N +TY  ++    +  +L    +L+ EM   G  P+V   N ++   C 
Sbjct: 416 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCD 475

Query: 431 LGELKEAVNVWNEMEAASLS-----------PGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            G+LK+A+ ++  M+ + +            P   ++ +++ G + +G  +EA E ++EM
Sbjct: 476 NGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEM 535

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
             RG++  P   T  ++++ L +  +++ A  ++  + +K    +V  +   I      G
Sbjct: 536 PHRGIV--PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAG 593

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            V +      +M    ++    T+  L+ G +K+ N   A +I +++
Sbjct: 594 MVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEM 640



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 190/427 (44%), Gaps = 58/427 (13%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V    +Y  +I  L K  +      L  EM++++  P ++T   +  ++  F  +  
Sbjct: 251 PNVV----IYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVT---YNCMINGFCISGR 303

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
              A ++L EM +    PD   F  L++A  K     EA +L+DEM  R   PS   ++S
Sbjct: 304 WSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSS 363

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G+CK+ +L  A+++       G  PDI+ +N L++GY +  ++ D  +LL EM   G
Sbjct: 364 MIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG 423

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID--- 365
              N  +YT LI   C++  +  A     EM  SG   +VVT  TL+ G C + K+    
Sbjct: 424 LVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDAL 483

Query: 366 --------------------------RCYEIL-----------------DSMIQRGILPN 382
                                     + Y IL                 + M  RGI+P+
Sbjct: 484 EMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPD 543

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++    K+  L+E  ++   M      PDV  +N +I   CK G + + + ++ 
Sbjct: 544 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFC 603

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM    +     +++ +++GF     +  A + F+EM+  G+   P   T++ +L  L  
Sbjct: 604 EMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVY--PDTITIRNMLTGLWS 661

Query: 503 AQKVEMA 509
            +++E A
Sbjct: 662 KEELERA 668



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 158/328 (48%), Gaps = 19/328 (5%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWAL--MEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           + S   Y ++I    K  +  A   +  +   +   P +IT   F  L+  +  A+ V  
Sbjct: 355 IPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIIT---FNTLIAGYCRAKRVDD 411

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
            I++L EM + G   +   +  L+   C+   +  A  L  EM      P++    +LL 
Sbjct: 412 GIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLD 471

Query: 252 GWCKEGKLVEAKYVLVQMKDA-----------GFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           G C  GKL +A  +   M+ +           G EPD+  YN L+ G    GK  +A EL
Sbjct: 472 GLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEEL 531

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            +EM  +G  P+  +Y+ +I  LC+  +++EA + F  M       DVVT+ TLI+G+CK
Sbjct: 532 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCK 591

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-VS 419
           +  +D   E+   M QRGI+ + +TY+ ++    K + ++  +++  EM   G  PD ++
Sbjct: 592 AGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTIT 651

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAA 447
             N++  L  K  EL+ AV +  +++ +
Sbjct: 652 IRNMLTGLWSK-EELERAVAMLEDLQMS 678



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 152/380 (40%), Gaps = 73/380 (19%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLK--EMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           P ++ +  L+    +MG+      L K  EM R  C  NA S+T+L++  C   K+  A 
Sbjct: 79  PSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPC--NAYSFTILMKCFCSCSKLPFAL 136

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE------------------------ 369
             F ++ + G    VVT+ TL+ G C   +I    +                        
Sbjct: 137 STFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREG 196

Query: 370 -------ILDSMIQRGILPNQLTYLHIMLAH-------------EKKEELEECV------ 403
                  +LD M++ G+ PNQ+TY  I+                 K EE+   +      
Sbjct: 197 RVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIY 256

Query: 404 -----------------ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
                             L  EM++    PD+  YN +I   C  G   +A  +  EM  
Sbjct: 257 NTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE 316

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             ++P   +F  +++ F+ +G   EA E + EM+ R ++  P   T  ++++   +  ++
Sbjct: 317 RKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSII--PSTVTYSSMIDGFCKQNRL 374

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           + A+ ++    TKGC  ++  +   I        V +      +M +A ++    T+  L
Sbjct: 375 DAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTL 434

Query: 567 MRGLKKLYNRQIAAEITEKV 586
           + G  ++ +   A ++ +++
Sbjct: 435 IHGFCQVGDLNAAQDLLQEM 454



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 133/331 (40%), Gaps = 37/331 (11%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG+ ++  + DA +L   M R    P+   +  L+  + RM + +       +ME   
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLR 111

Query: 344 CEADVVTYTTLISGFCKSRKI--------------------------------DRCYEIL 371
              +  ++T L+  FC   K+                                DR  E L
Sbjct: 112 MPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEAL 171

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D +  +   PN +T+  +M    ++  + E V L+  M + G  P+   Y  ++   CK+
Sbjct: 172 D-LFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 230

Query: 432 GELKEAVNVWNEMEAAS-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           G+   A+N+  +ME  S + P    +  ++ G    G   +A   F EM  + +   P  
Sbjct: 231 GDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIF--PDI 288

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   ++N    + +   A+ +   ++ +    +V  ++  I++    G   EA     +
Sbjct: 289 VTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDE 348

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
           M+   ++P   T++ ++ G  K  NR  AAE
Sbjct: 349 MLPRSIIPSTVTYSSMIDGFCK-QNRLDAAE 378


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 224/495 (45%), Gaps = 45/495 (9%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           LG+R+++WAS++   + S + +  +I  LS+       W  +EE++      + +  F +
Sbjct: 75  LGFRFFIWASRRER-LRSGESFGLVIDMLSEDNGCDLYWQTLEELKSGGVS-VDSYCFCV 132

Query: 180 LMRRFASARMVKKAIE------------------------------------VLDEMPKY 203
           L+  +A   + +KA+E                                    V +EM K 
Sbjct: 133 LISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKC 192

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
            C P+ + FG L+D L K     +A K+FD+M  R   P+   +T L+ G C+ G   +A
Sbjct: 193 NCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDA 252

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
           + +  +MK +G  PD V +N LL G+ ++G+M +AFELL+   + G       Y+ LI  
Sbjct: 253 RKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDG 312

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           L R  +  +A   +  M +   + D++ YT LI G  K+ KI+   ++L SM  +GI P+
Sbjct: 313 LFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPD 372

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
              Y  ++ A   +  LEE   L  EM +    PD   + ++I   C+ G +++A  ++ 
Sbjct: 373 TYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFL 432

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM-VGRG---LLSAPQYGTLKALLN 498
           E+E +  SP   +F  ++ G    G L EA     +M VGR     L     G      +
Sbjct: 433 EIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRS--FD 490

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           +++++  +  A    +     G   ++ ++ + I+     G +  A      +    + P
Sbjct: 491 TMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGLSP 550

Query: 559 QPDTFAKLMRGLKKL 573
              T+  L+ GL ++
Sbjct: 551 DSVTYNTLINGLHRV 565



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 175/403 (43%), Gaps = 62/403 (15%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF------VILMRRFASARMVKKAI 194
           Y A+IK+L           L+EE R  + ++  TE F       IL+       +V+KA 
Sbjct: 376 YNAVIKALCGR-------GLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAE 428

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL---------RH 245
           E+  E+ K GC P    F  L+D LCK+  +KEA  L  +M      SL         R 
Sbjct: 429 EIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGNRS 488

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F +++    + G +++A   L    D G  PDIV YN L++G+ + G +  A +LL  ++
Sbjct: 489 FDTMV----QSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQ 544

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KG  P++ +Y  LI  L R+ + EEA + F    +         Y +L++  C+ RK+ 
Sbjct: 545 LKGLSPDSVTYNTLINGLHRVGREEEAFKLFY--AKDDFRHSPAVYRSLMTWSCRRRKLL 602

Query: 366 RCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEEC-------------VELMGEMR 410
             + +             + YL  +  L  E   E+E+C             +EL     
Sbjct: 603 VAFNL------------WMKYLKKISCLDDETANEIEQCFKEGETERALRRLIELDTRKD 650

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           ++   P    Y + +   C+ G   EA+ V++ +    +     S V ++HG   +  L 
Sbjct: 651 ELTLGP----YTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQLD 706

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA-QKVEMAKDV 512
            A + F   +       P+      LL+SLL++ +K+E+   +
Sbjct: 707 AAIDVFLYTLDNNFKLMPR--VCNYLLSSLLQSREKMEIVSQL 747


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 199/402 (49%), Gaps = 11/402 (2%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           ++ +L+        V +A+++L EM     +PD   +  L+  LCK   V++A +L+ EM
Sbjct: 328 LYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEM 387

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
              R  P+    + +L G C++G L +A+     +  +   PD+ +YN ++ GY ++G +
Sbjct: 388 CFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDV 447

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A  L K +R K   P+  ++  LI   C+  K+ EA R    ++  G E   VTYTTL
Sbjct: 448 EEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTL 507

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ++ +C+   I++ +E+L  M  + I P  +TY  ++    K+ +LEE V+L+ +MR  G 
Sbjct: 508 MNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGL 567

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD   YN +I+  CK  ++++A  + ++M   +L P   ++ V++ G    G + +A  
Sbjct: 568 APDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADR 627

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV----EMAKDVWSCIVTKGCELNVYAWTI 530
               +  R +         K    ++++A  V    + A  V+  +V KG E+++  ++ 
Sbjct: 628 VLVSLQDRNI------NLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSA 681

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            I+ L     + EA  Y   M+   V P  + F  ++    +
Sbjct: 682 VINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHR 723



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 202/443 (45%), Gaps = 44/443 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L           L  +M K+  +P ++T   + I+ + F    ++  A E++ 
Sbjct: 223 YNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVT---YKIVAKGFHLLGLMSGAREIIQ 279

Query: 199 EM-PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKE 256
           +M    G +PD   +  L+   C+  +++EA +L  D +   F+ ++  ++ LL   CK 
Sbjct: 280 KMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKR 339

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ EA  +L +M+    +PD+V Y+ L+ G  + GK+  A +L KEM      PN+ ++
Sbjct: 340 GQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAH 399

Query: 317 TVLIQALC-----------------------------------RMEKMEEANRAFVEMER 341
           + +++ LC                                   ++  +EEA R +  +  
Sbjct: 400 SGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRD 459

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
                 +VT+ +LI GFCK+RK+     +L+S+   G+ P+ +TY  +M A+ ++  + +
Sbjct: 460 KAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINK 519

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
             EL+ EM      P V  Y VVI+  CK  +L+E+V +  +M A  L+P   ++  ++ 
Sbjct: 520 LHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQ 579

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            F     + +A E   +M+   L   P   T   L++ L R   VE A  V   +  +  
Sbjct: 580 CFCKAKDMRKAFELLDDMLIHNLEPTP--ATYNVLIDGLCRYGDVEDADRVLVSLQDRNI 637

Query: 522 ELNVYAWTIWIHSLFSNGHVKEA 544
            L   A+T  I +    G  + A
Sbjct: 638 NLTKVAYTTMIKAHCVKGDAQRA 660



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 192/461 (41%), Gaps = 81/461 (17%)

Query: 102 LRPGLTERVINRCG--DAGNLG-----YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKF 154
           L+P L    +  CG    GN+       R  + +  Q N +    +Y  L+ SL K  + 
Sbjct: 287 LKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVI----LYSVLLSSLCKRGQV 342

Query: 155 GAVWALMEEMRKE--KPQLITTEVFV-----------------------ILMRRFASARM 189
                L+ EM     +P L+T  + +                       I    FA + +
Sbjct: 343 DEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGI 402

Query: 190 VKKAIE---------VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-F 239
           +K   E           D +      PD  ++  ++D   K   V+EA +L+  +R++  
Sbjct: 403 LKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAI 462

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            PS+  F SL+YG+CK  K+VEA+ +L  +K  G EP  V Y  L++ Y + G +    E
Sbjct: 463 TPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHE 522

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT------ 353
           LL EM  K  +P   +YTV+I+ LC+  K+EE+ +   +M   G   D +TY T      
Sbjct: 523 LLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFC 582

Query: 354 -----------------------------LISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
                                        LI G C+   ++    +L S+  R I   ++
Sbjct: 583 KAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKV 642

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
            Y  ++ AH  K + +  V++  +M + G    + +Y+ VI   CK   + EA   +  M
Sbjct: 643 AYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIM 702

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            +  +SP  + F +M++ F   G +    E    M+  GLL
Sbjct: 703 LSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLL 743



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 209/459 (45%), Gaps = 27/459 (5%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKS-LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           +Y  +  +  + HS  V R L+   L++ R+F  +  ++++M +E+              
Sbjct: 49  FYHLSRNEFGFQHS-RVSRFLVSHVLARKRRFKDLRLVLDQMLQEE-------------- 93

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP- 241
              ++RMV  A+ VL +M +    P    +  LL  L     + +   +++++++   P 
Sbjct: 94  --VASRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWD---VYNDIKDSGTPQ 148

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           S R  + ++ G C + +  +A   L Q     F P +V +N ++S Y ++G    A    
Sbjct: 149 SARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFF 208

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M + G  P+  SY +LI  L     MEEA     +ME+ G + D+VTY  +  GF   
Sbjct: 209 CMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLL 268

Query: 362 RKIDRCYEILDSMI-QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             +    EI+  M+   G+ P+ +TY  ++  H +   +EE + L  ++   G   +V  
Sbjct: 269 GLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVIL 328

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y+V++   CK G++ EA+ +  EMEA +L P   ++ +++HG   QG + +A + +KEM 
Sbjct: 329 YSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMC 388

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
              +   P       +L  L     +  A+  +  ++      +V  + I I      G 
Sbjct: 389 FNRIF--PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGD 446

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
           V+EA      + D  + P   TF  L+ G  K  NR++ 
Sbjct: 447 VEEAVRLYKRLRDKAITPSIVTFNSLIYGFCK--NRKVV 483



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 126/540 (23%), Positives = 248/540 (45%), Gaps = 22/540 (4%)

Query: 64  HGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINR-CGDAGNLGY 122
           H S NEF     ++ R L    S +   +   +   +VL   L E V +R   DA     
Sbjct: 51  HLSRNEFGFQHSRVSRFLV---SHVLARKRRFKDLRLVLDQMLQEEVASRMVHDA----- 102

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILM 181
            + +   K+ N   S   Y +L+ +L   R    +W +  +++    PQ   T    I++
Sbjct: 103 LFVLVKMKEQNLRPSIQTYNSLLYNL---RHTDIMWDVYNDIKDSGTPQSARTSS--IIV 157

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK- 240
                    + A+  L +       P    F  ++   CK   + + AK F  M  ++  
Sbjct: 158 DGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCK-LGLADVAKSFFCMMLKYGI 216

Query: 241 -PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P    +  L++G    G + EA  +   M+  G +PD+V Y  +  G+  +G M+ A E
Sbjct: 217 LPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGARE 276

Query: 300 LLKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           ++++M   +G  P+  +YTVLI   C+M  +EEA R   ++  SG + +V+ Y+ L+S  
Sbjct: 277 IIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSL 336

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK  ++D   ++L  M    + P+ +TY  ++    K+ ++++ ++L  EM      P+ 
Sbjct: 337 CKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNS 396

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             ++ +++  C+ G L +A   ++ +  ++L P    + +M+ G++  G + EA   +K 
Sbjct: 397 FAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKR 456

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           +  + +   P   T  +L+    + +KV  A+ +   I   G E +   +T  +++    
Sbjct: 457 LRDKAI--TPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEE 514

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR-KMAAERQITF 597
           G++ +     L+M   D+ P   T+  +++GL K    + + ++ E +R K  A  QIT+
Sbjct: 515 GNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITY 574



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 151/362 (41%), Gaps = 50/362 (13%)

Query: 94  ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRK 153
           +  HSG++   GL E+      DA     R Y  +    N      +Y  +I    K+  
Sbjct: 396 SFAHSGIL--KGLCEK--GMLSDA-----RMYFDSLIMSNLRPDVTLYNIMIDGYVKLGD 446

Query: 154 FGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211
                 L + +R +   P ++T   F  L+  F   R V +A  +L+ +  +G EP    
Sbjct: 447 VEEAVRLYKRLRDKAITPSIVT---FNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVT 503

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
           +  L++A C+  ++ +  +L  EM  +  +P++  +T ++ G CK+ KL E+  +L  M+
Sbjct: 504 YTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMR 563

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP------------------- 311
             G  PD + YN ++  + +   M  AFELL +M     +P                   
Sbjct: 564 AKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVE 623

Query: 312 ------------NAN----SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
                       N N    +YT +I+A C     + A + F +M   G E  +  Y+ +I
Sbjct: 624 DADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVI 683

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +  CK   I+        M+  G+ P+Q  +  ++ A  +   +    EL+  M K G +
Sbjct: 684 NRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLL 743

Query: 416 PD 417
            D
Sbjct: 744 HD 745


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 218/493 (44%), Gaps = 8/493 (1%)

Query: 109 RVINRCGDAGNLGYR-YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
           +++NR   AG      Y++       Y     +   LIK     +       +ME +   
Sbjct: 83  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH 142

Query: 168 -KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
            +P +     +  ++  F     ++ A +VL+ M   G  PD   +  ++ +LC    + 
Sbjct: 143 TEPDVFA---YNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLG 199

Query: 227 EAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A  + D++  +   P++  +T L+     EG + EA  +L +M   G  PD+  YN ++
Sbjct: 200 LALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 259

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  + G +  A EL+  +  KGC+P+  SY +L++A     K +E  +   EM   GCE
Sbjct: 260 RGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCE 319

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            + VTY+ LIS  C+  +ID    +L  MI++ + P+  +Y  ++ A  K+  L+  + +
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           M  M   GC+PD+ NYN ++   CK G   +A+ ++N++      P   S+  M+     
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 439

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G    A      M+ +G+   P   T  +L++ L R   VE A  +   +   G    V
Sbjct: 440 CGDRSRALGMVPAMISKGI--DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTV 497

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
            ++ I +  L     + +A     +M++    P   T+  L+ G+     R  A E+   
Sbjct: 498 ISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANS 557

Query: 586 VRKMAAERQITFK 598
           +       Q +FK
Sbjct: 558 LFSRDVISQDSFK 570



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 188/427 (44%), Gaps = 76/427 (17%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I    K+ +  A   ++  M+     P ++T   + I++    + R +  A+ VLD
Sbjct: 150 YNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVT---YNIMIGSLCNRRKLGLALTVLD 206

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++    C P    +  L++A      + EA KL +EM  R   P +  + +++ G CKEG
Sbjct: 207 QLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG 266

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  ++  +   G EPD++ YN LL  +   GK  +  +L+ EM  +GC+PN  +Y+
Sbjct: 267 MVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 326

Query: 318 VLIQALCRMEKMEEAN---RAFVEME--------------------------------RS 342
           +LI +LCR  +++EA    +  +E E                                 +
Sbjct: 327 ILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 386

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILD------------------------------ 372
           GC  D+V Y T+++  CK+   ++  EI +                              
Sbjct: 387 GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 446

Query: 373 -----SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
                +MI +GI P+++TY  ++    +   +EE + L+ +M + G  P V +YN+V+  
Sbjct: 447 LGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 506

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK+  + +A+ ++ EM      P   ++++++ G    G   EA E    +  R ++S 
Sbjct: 507 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQ 566

Query: 488 PQYGTLK 494
             +  L 
Sbjct: 567 DSFKRLN 573



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 161/352 (45%), Gaps = 3/352 (0%)

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
           H   LL   CK GK  E+ Y L  + + G+ PD+++   L+ G+     +  A  ++ E+
Sbjct: 80  HLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EI 138

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
                +P+  +Y  +I   C++ ++E A +    M+  G   D+VTY  +I   C  RK+
Sbjct: 139 LESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKL 198

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
                +LD ++    +P  +TY  ++ A   +  + E ++L+ EM   G +PD+  YN +
Sbjct: 199 GLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 258

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           IR  CK G ++ A  +   + +    P   S+ +++  FL QG   E  +   EM  RG 
Sbjct: 259 IRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG- 317

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   L++SL R  +++ A  V   ++ K    + Y++   I +L   G +  A
Sbjct: 318 -CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 376

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
                 M+    +P    +  ++  L K  N   A EI  K+R M     ++
Sbjct: 377 IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVS 428


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 196/403 (48%), Gaps = 13/403 (3%)

Query: 144 LIKSLSKMR--KFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           LI S   +   K G    L ++M  E  +P ++T   +  L+           AI +L  
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVT---YGTLINGLCKVGNTSAAIRLLGS 158

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M +  C+P+ F +  ++D+LCK+  V EA  LF EM  +   P +  + SL++  C   +
Sbjct: 159 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 218

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-RRKGCDPNANSYT 317
                 +L +M D+   PD+V +N ++    + GK+T+A +++ +M +R GC PN  SY 
Sbjct: 219 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYN 278

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+++++++A   F EM R     D VTY+TLI G C   ++     +   M+  
Sbjct: 279 TLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVAC 338

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
             +PN +TY  ++    K   L E + L+  +      PD+   N+ I   C+ GEL+ A
Sbjct: 339 SQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAA 398

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKAL 496
            ++++ + +  L P   ++ +M++G   +G L EA + F+EM   G  L+   Y T+   
Sbjct: 399 RDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT-- 456

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
               LR  +   A  +   +V +G   +    T+++  L  +G
Sbjct: 457 -RGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDG 498



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 217/480 (45%), Gaps = 46/480 (9%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           +  AI   + M +    P    F  LL ++ K         L  +M      P++     
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 249 LLYGWC--KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           L+  +C    GK+ EA ++  +M   GF PD+V Y  L++G  ++G  + A  LL  M +
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ 161

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG------------------CE--- 345
           K C PN  +Y  +I +LC+  ++ EA   F EM   G                  CE   
Sbjct: 162 KNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKH 221

Query: 346 --------------ADVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIM 390
                          DVV++ T++   CK  K+   ++++D MIQR G +PN ++Y  ++
Sbjct: 222 VATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLI 281

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
             + K + +++ + L GEM +   +PD   Y+ +I   C +  L++A+ +++EM A S  
Sbjct: 282 NGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI 341

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++ +++        L EA    K + G  L   P        ++ + RA ++E A+
Sbjct: 342 PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL--DPDIQVNNIAIDGMCRAGELEAAR 399

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           D++S + +KG + +V+ ++I I+ L   G + EA     +M +         +  + RG 
Sbjct: 400 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 459

Query: 571 KKLYNRQIAAEITEKV--RKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRRW 628
            +      A ++ +++  R  +A+   T  ++ +    D  +++ KQ+   +   +Q+ W
Sbjct: 460 LRNNETSRAIQLLQEMVARGFSADAS-TMTLFVKMLSDDGLDQSLKQI--LRDFCKQKSW 516


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 143/574 (24%), Positives = 245/574 (42%), Gaps = 116/574 (20%)

Query: 65  GSHNEFSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYR 123
           G  +E  H  V +I R+++   +  PKLE  L+H    L+P     V+    D   +  R
Sbjct: 61  GGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQTDE-RVALR 119

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKF-GA--VWALMEEMRKEKPQLITTEVFVIL 180
           ++ WA +Q  Y H   VY A+++ LSK +   GA  V  LM + R E+      E F  +
Sbjct: 120 FFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIER----RPEAFGYV 175

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           M  ++ A  ++ A+ VL  M K G EPD  +    +  L   + + +A +  + M     
Sbjct: 176 MVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM----- 230

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
                            ++VE             EP+++ YN L+ GY  + ++ DA EL
Sbjct: 231 -----------------QIVE------------IEPNVITYNCLIKGYCDLHRLEDAMEL 261

Query: 301 LKEMRRKGCDPNANSYTVLIQALCR----------MEKM--------------------- 329
           + EM  KGC P+  SY  ++  LC+          MEKM                     
Sbjct: 262 IAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLS 321

Query: 330 -----EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
                +EA     E E      D V Y+ ++  FC+  ++D+  EI++ M  +G +P+ +
Sbjct: 322 KHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVV 381

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY  ++    ++ ++++  +++ +M K GC P+  +Y  ++   CK G   EA  + N  
Sbjct: 382 TYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMS 441

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           E     P   ++ V++HGF  +G   EAC+  +EM+ +G    P    +  L+ SL + +
Sbjct: 442 EEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPV--EINLLIQSLCQEE 499

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIH------------------------------- 533
           KV+ AK      +  GC +NV  +T  IH                               
Sbjct: 500 KVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYT 559

Query: 534 ----SLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
               +L   G ++EA    + M+   ++P P T+
Sbjct: 560 TIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTY 593



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 174/340 (51%), Gaps = 36/340 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK---PQLITTEVFVILM---------------- 181
           Y  ++  L K ++   V  LME+M K+    P  +T   FV ++                
Sbjct: 277 YYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREA 336

Query: 182 --RRFASARM--------------VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
             RRF   ++              + KA E+++EM   GC PD   +  +++ LC+   V
Sbjct: 337 EERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKV 396

Query: 226 KEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            +A K+  +M +   KP+   +T+LL G CK G  +EA+ ++   ++  + P+ + Y+ L
Sbjct: 397 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVL 456

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G+ + GK ++A +L++EM +KG  P      +LIQ+LC+ EK++EA R   +   +GC
Sbjct: 457 MHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGC 516

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             +VV +TT+I GFC+   ++    +LD M      P+ +TY  I+ A  KK  +EE  +
Sbjct: 517 AVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATK 576

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           L  +M ++G +P    Y  VI   C++G +++ + +  +M
Sbjct: 577 LAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKM 616



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 188/437 (43%), Gaps = 74/437 (16%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D  V+  +L+ L K    + A ++   M + R +     F  ++  + + GKL  A  VL
Sbjct: 133 DPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVL 192

Query: 267 VQMKDAGFEPD-----------------------------------IVVYNNLLSGYAQM 291
             M+ AG EPD                                   ++ YN L+ GY  +
Sbjct: 193 TMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDL 252

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR----------MEKM------------ 329
            ++ DA EL+ EM  KGC P+  SY  ++  LC+          MEKM            
Sbjct: 253 HRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVT 312

Query: 330 --------------EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
                         +EA     E E      D V Y+ ++  FC+  ++D+  EI++ M 
Sbjct: 313 YNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMF 372

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +G +P+ +TY  ++    ++ ++++  +++ +M K GC P+  +Y  ++   CK G   
Sbjct: 373 SKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSL 432

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA  + N  E     P   ++ V++HGF  +G   EAC+  +EM+ +G    P    +  
Sbjct: 433 EAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPV--EINL 490

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+ SL + +KV+ AK      +  GC +NV  +T  IH       ++ A S   DM  ++
Sbjct: 491 LIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSN 550

Query: 556 VMPQPDTFAKLMRGLKK 572
             P   T+  ++  L K
Sbjct: 551 KHPDVVTYTTIIDALGK 567



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 201/420 (47%), Gaps = 47/420 (11%)

Query: 167 EKPQLITTEVFVI----LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           E+ Q++  E  VI    L++ +     ++ A+E++ EMP  GC PD+  +  ++  LCK 
Sbjct: 228 ERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKE 287

Query: 223 SSVKEAAKLFDEM---------------------------------RE----RFKPSLRH 245
             +KE   L ++M                                 RE    RF+     
Sbjct: 288 KRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG 347

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           ++++++ +C+EG++ +AK ++ +M   G  PD+V Y ++++G  Q  K+  A ++L++M 
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 407

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           + GC PN  SYT L+  LC+     EA       E      + +TY+ L+ GF +  K  
Sbjct: 408 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSS 467

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              +++  MI++G  P  +    ++ +  ++E+++E    M +    GC  +V N+  VI
Sbjct: 468 EACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVI 527

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+  +L+ A+++ ++M  ++  P   ++  ++     +G + EA +   +M+  GL+
Sbjct: 528 HGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLI 587

Query: 486 SAPQYGTLKALLNSLLRAQKVE-MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             P   T + +++   R  +VE + K +   +  + C     A+   I  L S G++++A
Sbjct: 588 PTPV--TYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVIEKLCSFGNLEQA 642



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 6/271 (2%)

Query: 114 CGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT 173
           C +  +L  R  M  S++  ++ +   Y  L+    +  K      L+ EM K K    T
Sbjct: 426 CKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIK-KGFFPT 484

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
                +L++       V +A   +++    GC  +   F  ++   C+   ++ A  L D
Sbjct: 485 PVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLD 544

Query: 234 EMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           +M    K P +  +T+++    K+G++ EA  + ++M   G  P  V Y  ++  Y +MG
Sbjct: 545 DMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMG 604

Query: 293 KMTDAFELLKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           ++ D  +LL++M  R+ C     +Y  +I+ LC    +E+A +   ++ R+  + D  T 
Sbjct: 605 RVEDLLKLLEKMLSRQEC---RTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTC 661

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
             LI  +         Y +   M  R ++P+
Sbjct: 662 HMLIESYLSKGIPLMSYNVACRMFNRNLIPD 692


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 180/371 (48%), Gaps = 8/371 (2%)

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLR 244
           +A+ + KA+EVL+ M K G  PD   +  +L   C +   KEA     +MR +  +P++ 
Sbjct: 221 TAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVV 280

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            ++SL+   CK G+  EA+ +   M   G EPDI  Y  LL G+ + G++ ++ +L   M
Sbjct: 281 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLM 340

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            R G  P+  +Y  LI   C   KM+EA +    M   G + D+VTY TLI+G+C+  ++
Sbjct: 341 VRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRM 400

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           D    +   M+  G+ PN +TY  I+  L H ++    +  EL   + K G   ++S YN
Sbjct: 401 DDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK--ELYVSITKSGTQLELSTYN 458

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           +++   CK     EA+ ++  +    L   T +F +M+   L  G + EA + F      
Sbjct: 459 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 518

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL+  P   T   +  +L+    +E   D++  +   GC  +       +  L   G + 
Sbjct: 519 GLV--PDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDIT 576

Query: 543 EACSYCLDMMD 553
            A +Y L M+D
Sbjct: 577 RAGTY-LFMID 586



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 186/413 (45%), Gaps = 15/413 (3%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T   + IL+     A  +      L  + K G   D   F  LL  LC +    +A  + 
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIV 150

Query: 233 DEMRERFK--PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD---AGFEPDIVVYNNLLSG 287
                     P +  + +LL G C E +  EA  +L  M D    G  PD+V YN +L+G
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 288 YAQMG--------KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           + + G         M  A E+L  M + G  P+  +Y  ++   C   + +EA     +M
Sbjct: 211 FFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 270

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
              G E +VVTY++L++  CK+ +     +I DSM +RG+ P+  TY  ++  H K+  +
Sbjct: 271 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRV 330

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            E  +L   M +IG  PD+  YN +I   C  G++ EA  +   M +  + P   ++  +
Sbjct: 331 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 390

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           ++G+     + +A   FKEMV  G+  +P   T   +L  L   ++   AK+++  I   
Sbjct: 391 INGYCRVSRMDDALALFKEMVSSGV--SPNIITYNIILQGLFHTRRTAAAKELYVSITKS 448

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G +L +  + I +H L  N    EA     ++   D+  +  TF  ++  L K
Sbjct: 449 GTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 501



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 162/328 (49%), Gaps = 15/328 (4%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++  + S+   K+AI  L +M   G EP+   +  L++ LCKN    EA K+FD M +R 
Sbjct: 250 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 309

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P +  + +LL G CKEG+++E++ +   M   G +PDI+ YN L+ G    GKM +A 
Sbjct: 310 LEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 369

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +LL  M   G  P+  +Y  LI   CR+ +M++A   F EM  SG   +++TY  ++ G 
Sbjct: 370 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 429

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
             +R+     E+  S+ + G      TY  I+    K    +E + +   +    C+ D+
Sbjct: 430 FHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDL 485

Query: 419 S----NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
                 +N++I    K G + EA +++    A  L P   ++ +M    + QG L E  +
Sbjct: 486 QLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDD 545

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            F  M   G  +  +      +LNS++R
Sbjct: 546 LFLSMEENGCSADSR------MLNSIVR 567



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 70/341 (20%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD---PNANSYT 317
           +A++V  ++   G    I   N  L+  A+      A      M R G     P  ++Y 
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTYA 96

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   CR  +++    A   + + G   D +T+T L+ G C  +   R  + +D +++R
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADK---RTSDAMDIVLRR 153

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
                                          M ++GC+PDV +YN +++  C     +EA
Sbjct: 154 -------------------------------MTELGCIPDVFSYNNLLKGLCDENRSQEA 182

Query: 438 VNVWNEM---EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
           + + + M         P   S+  +++GF  +G                           
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG--------------------------- 215

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
             + + L AQ ++ A +V + +V  G   +   +   +H   S+G  KEA      M   
Sbjct: 216 --IQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 273

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V P   T++ LM  L K      A +I + + K   E  I
Sbjct: 274 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDI 314


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 232/500 (46%), Gaps = 53/500 (10%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMV 190
           N V S   Y  LI    K+ +  A + + E M+++   P +IT   F  L+      R +
Sbjct: 241 NLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIIT---FNSLLSGLCKMRKM 297

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS-- 248
           K+A  +L EM   G  PD + +  L D L +      A +L+++  E+    + ++T   
Sbjct: 298 KEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEK-GIRINNYTGSI 356

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL G CK+GK+ +A+ +L +  + G   D V+YN  ++GY ++G M  A   ++ M   G
Sbjct: 357 LLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFG 416

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN+ ++  LI   C M++M++A     +M   G    V TY TLI G+ K    DRC+
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCF 476

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           +IL+ M + G+ PN ++Y  ++    K  ++ E   ++ +M   G +P+   YN++I  +
Sbjct: 477 QILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGS 536

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C +G++K+A+  ++EM  + +SP   ++ V++ G   +G L EA ++  ++   G   +P
Sbjct: 537 CMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSG--HSP 594

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCI--------------VTKGC------------- 521
              T  +L++    A  V     ++  +              +  GC             
Sbjct: 595 DVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYN 654

Query: 522 ---ELNVY----AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG----- 569
              ++N+      +   IH     G+ ++A S    M+D  + P   T+  L+ G     
Sbjct: 655 EMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREG 714

Query: 570 ----LKKLYNRQIAAEITEK 585
               +K L N   A E+  K
Sbjct: 715 KLSNIKDLVNNMKAKELAPK 734



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 171/365 (46%), Gaps = 9/365 (2%)

Query: 127 WASK--QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMR 182
           W  K  +     S + Y  LI    K+  F   + ++E+M +   KP +++   +  L+ 
Sbjct: 443 WVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVS---YGSLIN 499

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKP 241
                  + +A  VL +M   G  P+  V+  L+D  C    VK+A + FDEM R    P
Sbjct: 500 CLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISP 559

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           +L  +  L+ G CK+GKL EA+  L Q+  +G  PD++ YN+L+SGYA  G ++    L 
Sbjct: 560 TLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLY 619

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           + M+  G  P   +Y  LI   C  E +E   + + EM +     D V Y  +I  + + 
Sbjct: 620 ETMKNLGIKPTVRTYHPLISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEI 678

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
               + Y +   M+ +GI P+++TY  ++L H ++ +L    +L+  M+     P    Y
Sbjct: 679 GNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTY 738

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           +++++  C L +   A   + EM   +  P       +  G   +G L E      EM  
Sbjct: 739 DILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNV 798

Query: 482 RGLLS 486
           +G+++
Sbjct: 799 KGIIN 803



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 184/379 (48%), Gaps = 3/379 (0%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           K +++  E+   G   D F++   + A  K  ++K   +  D MR+R  +P++  +  L+
Sbjct: 159 KVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLI 218

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G C+E ++ +A+ +  +M +      IV YN L+ GY ++G++  AF++ + M+ K   
Sbjct: 219 GGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVA 278

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  ++  L+  LC+M KM+EA     EME +G   D  TY+ L  G  +    +   E+
Sbjct: 279 PNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMEL 338

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            +   ++GI  N  T   ++    K+ ++E+  E++ +  + G V D   YN  +   C+
Sbjct: 339 YEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCR 398

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G++ +A+     ME+  L P + +F  ++  F     + +A E+ K+M  +G+   P  
Sbjct: 399 IGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGV--TPSV 456

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T   L++   +    +    +   +   G + NV ++   I+ L  +G + EA     D
Sbjct: 457 ETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRD 516

Query: 551 MMDADVMPQPDTFAKLMRG 569
           M+   V+P    +  L+ G
Sbjct: 517 MICRGVLPNAQVYNMLIDG 535



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 176/384 (45%), Gaps = 5/384 (1%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LL   CK+  ++EA +L++ MR   K PSL   + L      E + V+   + ++++++G
Sbjct: 112 LLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSG 171

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           F  D  +Y   +    ++  +    E L  MR++G  PN   Y VLI  LCR +++ +A 
Sbjct: 172 FRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAE 231

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           + F EM        +VTY TLI G+CK  ++D  +++ + M ++ + PN +T+  ++   
Sbjct: 232 KMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGL 291

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K  +++E   L+ EM   G +PD   Y+++     +  +   A+ ++ +     +    
Sbjct: 292 CKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINN 351

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLRAQKVEMAKDV 512
            +  ++++G   QG + +A E  K+    GL++    Y T    +N   R   +  A   
Sbjct: 352 YTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNT---FVNGYCRIGDMNKAILT 408

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              + + G   N   +   I        + +A  +   M +  V P  +T+  L+ G  K
Sbjct: 409 IERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGK 468

Query: 573 LYNRQIAAEITEKVRKMAAERQIT 596
           L       +I E++ ++  +  + 
Sbjct: 469 LCTFDRCFQILEQMEEIGVKPNVV 492



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 2/267 (0%)

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           I + + LLS   +   + +A EL + MRR G  P+  S ++L   L   ++  +    F+
Sbjct: 106 ITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFM 165

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           E+E SG   D   Y   I    K + +    E LDSM +RG+ PN   Y  ++    +++
Sbjct: 166 EIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREK 225

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
            + +  ++  EM  I  V  +  YN +I   CK+GEL  A  +   M+  S++P   +F 
Sbjct: 226 RIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFN 285

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            ++ G      + EA    KEM   G +  P   T   L + LLR      A +++    
Sbjct: 286 SLLSGLCKMRKMKEARSLLKEMEVNGFM--PDGYTYSILFDGLLRCDDGNGAMELYEQAT 343

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEA 544
            KG  +N Y  +I ++ L   G V++A
Sbjct: 344 EKGIRINNYTGSILLNGLCKQGKVEKA 370


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1202

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 214/429 (49%), Gaps = 22/429 (5%)

Query: 160 LMEEMRKEKPQLITTEVFV-ILMRRFASARM--------------VKKAIEVLDEMPKYG 204
           L++ + K K   +T  VF+ IL   F  ++               V K +E+ + M    
Sbjct: 523 LLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR 582

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAK 263
             P  F++  L+D LCK   +K+A +LFDEM   R  PSL  + +L+ G+CK+G   ++ 
Sbjct: 583 ISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSF 642

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            V  +MK    EP ++ +N LL G  + G + DA  +L EM+ +G  P+A ++++L    
Sbjct: 643 KVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGY 702

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
              +K + A   +     SG + +  T + L++  CK  +I++  EIL   + +G++PN+
Sbjct: 703 SSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNE 762

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           + Y  ++  + +K +L      +  M K G  PD   YN +IR  C+LG+++ A    N+
Sbjct: 763 VLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNK 822

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEAC-EYFKEMVGRGLL-SAPQYGTLKALLNSLL 501
           M+   +SP  +++ +++ G+ G+    + C +  KEM   G + +   YGT   L+N L 
Sbjct: 823 MKLKGVSPSVETYNILIGGY-GRKYEFDKCFDLLKEMEDNGTMPNVVSYGT---LINCLC 878

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           +  K+  A+ V   +  +G   NV  + + I    S G +++A  +  +M    +     
Sbjct: 879 KGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLV 938

Query: 562 TFAKLMRGL 570
           T+  L+ GL
Sbjct: 939 TYNTLIDGL 947



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 182/396 (45%), Gaps = 8/396 (2%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
             Y  LI    K       + + E M+ +  +P LIT   F  L++    A MV+ A  VL
Sbjct: 624  TYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLIT---FNTLLKGLFKAGMVEDAENVL 680

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
             EM   G  PD F F  L D    N     A  +++   +   K +    + LL   CKE
Sbjct: 681  TEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKE 740

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            G++ +A+ +L +    G  P+ V+YN ++ GY++ G +  A   +  M ++G  P+  +Y
Sbjct: 741  GQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAY 800

Query: 317  TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
              LI+  C +  ME A +   +M+  G    V TY  LI G+ +  + D+C+++L  M  
Sbjct: 801  NCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMED 860

Query: 377  RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
             G +PN ++Y  ++    K  +L E   +  +M   G  P+V  YN++I   C  G++++
Sbjct: 861  NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIED 920

Query: 437  AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
            A     EM    +     ++  ++ G    G L EA +   E+  +GL   P   T  +L
Sbjct: 921  AFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGL--KPDVFTYNSL 978

Query: 497  LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            ++    A  V+    ++  + T G +  +  + + I
Sbjct: 979  ISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLI 1014



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 176/392 (44%), Gaps = 7/392 (1%)

Query: 179  ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
            IL+        ++KA E+L      G  P+E ++  ++D   +   +  A    D M ++
Sbjct: 732  ILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQ 791

Query: 238  RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
              KP    +  L+  +C+ G +  A+  + +MK  G  P +  YN L+ GY +  +    
Sbjct: 792  GMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 851

Query: 298  FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            F+LLKEM   G  PN  SY  LI  LC+  K+ EA     +ME  G   +V  Y  LI G
Sbjct: 852  FDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDG 911

Query: 358  FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
             C   KI+  +   + M ++GI  N +TY  ++       +L E  +++ E+ + G  PD
Sbjct: 912  CCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPD 971

Query: 418  VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
            V  YN +I      G ++  + ++ EM+ + + P   ++ +++       C  E  E  K
Sbjct: 972  VFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLI-----SLCTKEGIELTK 1026

Query: 478  EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            ++ G   L  P       +L+       ++ A ++   ++ K   L+   +   I     
Sbjct: 1027 KIFGEMSLQ-PDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLK 1085

Query: 538  NGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             G + E  S   +M   ++ P+ DT+  +++G
Sbjct: 1086 VGKLCEVRSLIDEMKAREMEPEADTYDIIVKG 1117



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 160/359 (44%), Gaps = 73/359 (20%)

Query: 197  LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW-- 253
            +D M K G +PD   + CL+   C+   ++ A +  ++M+ +   PS+  +  L+ G+  
Sbjct: 785  IDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGR 844

Query: 254  ---------------------------------CKEGKLVEAKYVLVQMKDAGFEPDIVV 280
                                             CK  KL+EA+ V   M+D G  P++ +
Sbjct: 845  KYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRI 904

Query: 281  YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
            YN L+ G    GK+ DAF   +EM +KG + N  +Y  LI  L    K+ EA    +E+ 
Sbjct: 905  YNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEIS 964

Query: 341  RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            R G + DV TY +LISG+  +  + RC  + + M   GI P   TY H++++   KE +E
Sbjct: 965  RKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTY-HLLISLCTKEGIE 1023

Query: 401  ECVELMGEM----------------------------------RKIGCVPDVSNYNVVIR 426
               ++ GEM                                  + IG   D + YN +I 
Sbjct: 1024 LTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGL--DKTTYNSLIL 1081

Query: 427  LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               K+G+L E  ++ +EM+A  + P  D++ ++V G       + A  +++EM  +GLL
Sbjct: 1082 GQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLL 1140



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 161/409 (39%), Gaps = 43/409 (10%)

Query: 212 FGCLLDALCKNSS--VKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F  LL ++  N S  + EAA LF  +R E   PS    T LL    K  +      V + 
Sbjct: 483 FSYLLLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLN 542

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           + ++ F P   +Y   +    ++  +    EL   M+     P    Y VLI  LC++ +
Sbjct: 543 ILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQ 602

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           M++A + F EM        ++TY TLI G+CK    ++ +++ + M    I P+ +T+  
Sbjct: 603 MKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNT 662

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNY--------------------------- 421
           ++    K   +E+   ++ EM+  G VPD   +                           
Sbjct: 663 LLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSG 722

Query: 422 --------NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
                   ++++   CK G++++A  +     A  L P    +  M+ G+  +G L+ A 
Sbjct: 723 LKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGAR 782

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
                M  +G+   P +     L+ +      +E A+   + +  KG   +V  + I I 
Sbjct: 783 MKIDAMEKQGM--KPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIG 840

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---KKLYNRQIA 579
                    +      +M D   MP   ++  L+  L    KL   QI 
Sbjct: 841 GYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIV 889



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 152/351 (43%), Gaps = 45/351 (12%)

Query: 137  SYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILM---RRFASARMVK 191
            S + Y  LI    +  +F   + L++EM      P +++    +  +    +   A++VK
Sbjct: 831  SVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVK 890

Query: 192  KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
            +      +M   G  P+  ++  L+D  C    +++A +  +EM ++  + +L  + +L+
Sbjct: 891  R------DMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLI 944

Query: 251  YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
             G    GKL EA+ +L+++   G +PD+  YN+L+SGY   G +     L +EM+  G  
Sbjct: 945  DGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIK 1004

Query: 311  PNANSYTVLIQALCRMEKMEEANRAFVEMERSG----------CEA-------------- 346
            P   +Y +LI +LC  E +E   + F EM              C A              
Sbjct: 1005 PTLKTYHLLI-SLCTKEGIELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQ 1063

Query: 347  --------DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
                    D  TY +LI G  K  K+     ++D M  R + P   TY  I+  H + ++
Sbjct: 1064 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKD 1123

Query: 399  LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
                     EM++ G + DV   + ++    +    KEA NV +EM    L
Sbjct: 1124 YMGAYVWYREMQEKGLLLDVCIGDELVSGLKEEWRSKEAENVISEMNGRKL 1174



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 10/266 (3%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
             Y  LI  LS   K      ++ E+ ++  KP + T   +  L+  +  A  V++ I + 
Sbjct: 939  TYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFT---YNSLISGYRFAGNVQRCIALY 995

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
            +EM   G +P    +  L+ +LC    ++   K+F EM    +P L  +  +L+ +   G
Sbjct: 996  EEMKTSGIKPTLKTYHLLI-SLCTKEGIELTKKIFGEMS--LQPDLLVYNGVLHCYAVHG 1052

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
             + +A  +  QM +     D   YN+L+ G  ++GK+ +   L+ EM+ +  +P A++Y 
Sbjct: 1053 DMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYD 1112

Query: 318  VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++++  C M+    A   + EM+  G   DV     L+SG  +  +      ++  M  R
Sbjct: 1113 IIVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIGDELVSGLKEEWRSKEAENVISEMNGR 1172

Query: 378  GILPNQLTYLHIMLAHEKKEELEECV 403
             +    +     + A E+  E +ECV
Sbjct: 1173 KL--GDVIVDEDLSATERSFENQECV 1196


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 138/559 (24%), Positives = 238/559 (42%), Gaps = 69/559 (12%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     +  ++K   +        +L+E M+K     ++ E +   +        +
Sbjct: 290 KPNVV----TFNLMLKGFCQEGMMEEARSLVETMKK-GGNFVSLESYNTWLLGLLRNGKL 344

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
            +   VLDEM + G EP+ + +  ++D LC+N  + +A +L D M      P    +T+L
Sbjct: 345 LEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTL 404

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEP--------------------------------- 276
           L+G+C +GK+ EAK +L +M   G  P                                 
Sbjct: 405 LHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSY 464

Query: 277 --DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD----------------------PN 312
             D V  N +++G  + G++  A E++ EM   G +                      P+
Sbjct: 465 QLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPD 524

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT LI  LC++ K+EEA + F+EM       D VTY T +  FCK  KI     +L 
Sbjct: 525 VITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLK 584

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M + G      TY  ++L    K ++ E   LM EMR+ G  PD+  YN +I   C+ G
Sbjct: 585 DMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGG 644

Query: 433 ELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           + K+A ++ +EM +   +SP   SF +++  F   G    ACE F   +    +   +  
Sbjct: 645 KTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALS---VCGHKEA 701

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               + N LL   K+  AK+++   + +      + +   I  L  +G + +A      +
Sbjct: 702 LYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKL 761

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEK 611
           +D        +F  ++ GL K  N+Q A E+  ++ ++A E + + + Y R G    + K
Sbjct: 762 IDKGYCFDHSSFIPVIDGLSKRGNKQQADELG-RIMELALEDKTSDRTY-RNGNSIFRRK 819

Query: 612 AKKQVDGRKRRARQRRWGG 630
             K      +    R  GG
Sbjct: 820 LHKDGGSDWQDIINRDIGG 838



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 213/488 (43%), Gaps = 67/488 (13%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           V+  L+  F    M  +A ++++ M + G  PD   F   + ALC+   V EA+++F +M
Sbjct: 221 VYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDM 280

Query: 236 RERF-----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           +        KP++  F  +L G+C+EG + EA+ ++  MK  G    +  YN  L G  +
Sbjct: 281 QMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLR 340

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            GK+ +   +L EM   G +PN  SY +++  LCR   M +A R    M  +G   D VT
Sbjct: 341 NGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVT 400

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL---TYLHIMLAHEKKEELEECVELM- 406
           YTTL+ G+C   K+     IL+ MI++G  PN     T L+ +    +K E EE ++ M 
Sbjct: 401 YTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMN 460

Query: 407 ---------------------GEMRKIGCV------------------------------ 415
                                GE+ K   V                              
Sbjct: 461 EKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVST 520

Query: 416 --PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PDV  Y  +I   CK+G+L+EA   + EM A +L P + ++   V  F  QG +  A 
Sbjct: 521 NVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSAL 580

Query: 474 EYFKEMVGRGLLSAPQ-YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              K+M   G     Q Y +L   L S  + Q  EM   +   +  +G   ++  +   I
Sbjct: 581 RVLKDMERNGCSKTLQTYNSLILGLGS--KGQIFEMY-GLMDEMRERGIHPDICTYNNMI 637

Query: 533 HSLFSNGHVKEACSYCLDMMDADVM-PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           + L   G  K+A S   +M+D  V+ P   +F  L++   K  + ++A E+ +    +  
Sbjct: 638 NCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCG 697

Query: 592 ERQITFKM 599
            ++  + +
Sbjct: 698 HKEALYSL 705



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 189/359 (52%), Gaps = 11/359 (3%)

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M + G  P+ + F  L+ +LC+++++  A +LFD+M E+  +P+      L+ G+C+ G
Sbjct: 141 DMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAG 200

Query: 258 KLVEA-KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           +  +A ++V  +M   G   + VVYN L+S + +     +A +L++ M  KG  P+  ++
Sbjct: 201 RTKQALEFVDGKM---GGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTF 257

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSG----CEADVVTYTTLISGFCKSRKIDRCYEILD 372
              I ALCR  K+ EA+R F +M+  G     + +VVT+  ++ GFC+   ++    +++
Sbjct: 258 NSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVE 317

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
           +M + G   +  +Y   +L   +  +L E   ++ EM + G  P++ +YN+V+   C+  
Sbjct: 318 TMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNH 377

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + +A  + + M +  + P T ++  ++HG+  +G + EA     EM+ +G    P   T
Sbjct: 378 MMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKG--CHPNTYT 435

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
              LLNSL +  +   A+++   +  K  +L+     I ++ L  NG +++A     +M
Sbjct: 436 CNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEM 494



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 188/428 (43%), Gaps = 53/428 (12%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF----------------------- 210
           T  F +L++    +  +  A E+ D+M + GC+P++F                       
Sbjct: 151 TYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEFVD 210

Query: 211 ----------VFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
                     V+  L+ + CK     EA KL + M E+   P +  F S +   C+ GK+
Sbjct: 211 GKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKV 270

Query: 260 VEAKYVLVQMKDAG----FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            EA  +   M+  G     +P++V +N +L G+ Q G M +A  L++ M++ G   +  S
Sbjct: 271 FEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLES 330

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y   +  L R  K+ E      EM  +G E ++ +Y  ++ G C++  +     ++D M+
Sbjct: 331 YNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMV 390

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             G+ P+ +TY  ++  +  K ++ E   ++ EM + GC P+    N ++    K G   
Sbjct: 391 SNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKS 450

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA  +  +M   S    T +  ++V+G    G L +A E   EM   G  S  +   +  
Sbjct: 451 EAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAG 510

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+NS+          +V + +       +V  +T  I+ L   G ++EA    ++MM  +
Sbjct: 511 LVNSI---------HNVSTNVP------DVITYTTLINGLCKVGKLEEAKKKFIEMMAKN 555

Query: 556 VMPQPDTF 563
           + P   T+
Sbjct: 556 LHPDSVTY 563



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 12/276 (4%)

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L  +M + G +P   ++ +LIQ+LC    ++ A   F +M   GC+ +  T   L+ GFC
Sbjct: 138 LYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFC 197

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           ++ +  +  E +D  +   +  N++ Y  ++ +  K++  +E  +L+  M + G +PDV 
Sbjct: 198 RAGRTKQALEFVDGKMGGNV--NRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVV 255

Query: 420 NYNVVIRLACKLGELKEAVNVWNEM----EAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +N  I   C+ G++ EA  ++ +M    E     P   +F +M+ GF  +G + EA   
Sbjct: 256 TFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSL 315

Query: 476 FKEM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            + M  G   +S   Y T    L  LLR  K+   + V   +V  G E N+Y++ I +  
Sbjct: 316 VETMKKGGNFVSLESYNT---WLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDG 372

Query: 535 LFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKLMRG 569
           L  N H+       +D+M ++ V P   T+  L+ G
Sbjct: 373 LCRN-HMMLDARRLMDLMVSNGVYPDTVTYTTLLHG 407


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 199/460 (43%), Gaps = 76/460 (16%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F +L+    S   +  A+  L  M  +G  PD   +  LL+A C+   + EA  L   M
Sbjct: 206 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 265

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            ++   P+   + +L+  + + G + +A  V+  M   GFEPD+  YN L +G  Q GK+
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325

Query: 295 ------------------------------------TDAFELLKEMRRKGCDPNANSYTV 318
                                               +DA  LL+EMR KG      ++ +
Sbjct: 326 DEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNI 385

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI--- 375
           +I+ LC+  ++E A     +M   G   DV+TY TLI   CK+  I + Y ++D M+   
Sbjct: 386 VIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRG 445

Query: 376 --------------------------------QRGILPNQLTYLHIMLAHEKKEELEECV 403
                                           QRG +P++++Y  +M A+ K+   E  +
Sbjct: 446 LKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPAL 505

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L  EM +    P +S YN +I+   ++G LKEA++  NE+    L P   ++ +++H +
Sbjct: 506 RLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAY 565

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             +G L  A ++  +MV       P   T   L+N L    K++ A  ++   V KG ++
Sbjct: 566 CKEGDLENAFQFHNKMVENSF--KPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKV 623

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           +V  +   I ++  +G V  A  +  DM    +  QPD F
Sbjct: 624 DVITYNTLIQTMCKDGDVDTALHFFADMEARGL--QPDAF 661



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 195/409 (47%), Gaps = 9/409 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+ + +++        ++E M     +P L T   + +L      A  V +A  + 
Sbjct: 276 TYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWT---YNVLAAGLCQAGKVDEAFRLK 332

Query: 198 DEMPKYGCE-PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           DEM + G   PD   +  L DA  K     +A +L +EMRE+  K +L     ++ G CK
Sbjct: 333 DEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCK 392

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +G+L  A   L +M D G  PD++ YN L+  + + G +  A+ L+ EM R+G   +  +
Sbjct: 393 DGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFT 452

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
              ++  LC+ ++ EEA        + G   D V+Y T+++ + K    +    + D MI
Sbjct: 453 LNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMI 512

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           ++ + P+  TY  ++    +   L+E ++ + E+ + G VPD + YN++I   CK G+L+
Sbjct: 513 EKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLE 572

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
            A    N+M   S  P   +   +++G    G L +A + F+  V +G        T   
Sbjct: 573 NAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKG--KKVDVITYNT 630

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L+ ++ +   V+ A   ++ +  +G + + + + + + +L   G  +EA
Sbjct: 631 LIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEA 679



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 178/365 (48%), Gaps = 8/365 (2%)

Query: 214 CLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
            +L AL ++ S    A L D  R     R  P+   F  L++  C +G L +A   L  M
Sbjct: 172 AVLSALARSPSTSPQASL-DAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM 230

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           +  G  PD V YN LL+ + + G + +A  LL  M++ G  P   +Y  L+ A  R+  +
Sbjct: 231 QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWI 290

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG-ILPNQLTYLH 388
           ++A +    M  +G E D+ TY  L +G C++ K+D  + + D M + G +LP+ +TY  
Sbjct: 291 KQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNT 350

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           +  A  K     + + L+ EMR+ G    +  +N+VI+  CK GEL+ A+   N+M    
Sbjct: 351 LADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDG 410

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L+P   ++  ++H     G + +A     EMV RGL       TL  +L +L + ++ E 
Sbjct: 411 LAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGL--KLDTFTLNTVLYNLCKEKRYEE 468

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A+ +      +G   +  ++   + + F   + + A     +M++  + P   T+  L++
Sbjct: 469 AQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIK 528

Query: 569 GLKKL 573
           GL ++
Sbjct: 529 GLSRM 533



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 200/445 (44%), Gaps = 18/445 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L  +  K R       L+EEMR++  K  L+T     I+++       ++ A+  L
Sbjct: 347 TYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHN---IVIKGLCKDGELEGALGCL 403

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           ++M   G  PD   +  L+ A CK  ++ +A  L DEM R   K       ++LY  CKE
Sbjct: 404 NKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKE 463

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +  EA+ +L      GF PD V Y  +++ Y +      A  L  EM  K   P+ ++Y
Sbjct: 464 KRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTY 523

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI+ L RM +++EA     E+   G   D  TY  +I  +CK   ++  ++  + M++
Sbjct: 524 NTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVE 583

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
               P+ +T   +M       +L++ ++L     + G   DV  YN +I+  CK G++  
Sbjct: 584 NSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDT 643

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A++ + +MEA  L P   ++ V++      G   EA     ++   G LS       ++ 
Sbjct: 644 ALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLS-------QSF 696

Query: 497 LNSLLRAQKV---EMAKDVWSC--IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
            + LL+   V   E  KD  +    V    +    A+T  ++ L ++G  KEA +   +M
Sbjct: 697 SSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEM 756

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNR 576
           M   +     T+  LM GL K   R
Sbjct: 757 MQKGMSVDSSTYITLMEGLVKRQKR 781


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 219/467 (46%), Gaps = 37/467 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFV------------------IL 180
           +  ++ S +KM+ +    +L    E++  +P LIT  + +                  IL
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 181 MRRFASARM--------------VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
            R +    +              VKKA+   D++   G + ++  +  L++ +CK    +
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 227 EAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A KL  ++  R  KP++  +++++   CK   + EA  +  +M   G   D+V Y+ L+
Sbjct: 182 GAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+   GK+ +A  LL EM  K  +PN  +Y +L+ ALC+  K++EA      M ++  +
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVK 301

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            DV+TY+TL+ G+    ++ +   + ++M   G+ P+  TY  ++    K + ++E + L
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             EM +   VP +  Y+ +I   CK G +    ++ +EM          ++  ++ G   
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCK 421

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G L  A   F +M  + +   P   T   LL+ L +  +++ A++V+  ++TKG  LNV
Sbjct: 422 NGHLDRAIALFNKMKDQEI--RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNV 479

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           Y + + I+     G ++EA +    M D   +P   TF  ++  L K
Sbjct: 480 YTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFK 526



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 186/383 (48%), Gaps = 8/383 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  + K+        L+ ++  R  KP +   E++  ++      ++V +A  +  
Sbjct: 167 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNV---EMYSTIIDALCKYQLVSEAYGLFS 223

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G   D   +  L+   C    +KEA  L +EM  +   P++  +  L+   CKEG
Sbjct: 224 EMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK VL  M  A  +PD++ Y+ L+ GY  + ++  A  +   M   G  P+ ++YT
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   C+ + ++EA   F EM +      +VTY++LI G CKS +I   ++++D M  R
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR 403

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   + +TY  ++    K   L+  + L  +M+     P++  + +++   CK G LK+A
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDA 463

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+ ++          ++ VM++G   QG L EA     +M   G +  P   T + ++
Sbjct: 464 QEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCI--PNAFTFETII 521

Query: 498 NSLLRAQKVEMAKDVWSCIVTKG 520
            +L +  + + A+ +   ++ +G
Sbjct: 522 IALFKKDENDKAEKLLRQMIARG 544



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 176/350 (50%), Gaps = 6/350 (1%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEV 196
           ++Y  +I +L K +     + L  EM  +    I+ +V  +  L+  F     +K+AI +
Sbjct: 200 EMYSTIIDALCKYQLVSEAYGLFSEMTVKG---ISADVVTYSTLIYGFCIEGKLKEAIGL 256

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L+EM      P+ + +  L+DALCK   VKEA  +   M +   KP +  +++L+ G+  
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFL 316

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             ++ +A++V   M   G  PD+  Y  L++G+ +   + +A  L KEM +K   P   +
Sbjct: 317 VYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVT 376

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y+ LI  LC+  ++        EM   G  ADV+TY++LI G CK+  +DR   + + M 
Sbjct: 377 YSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMK 436

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            + I PN  T+  ++    K   L++  E+  ++   G   +V  YNV+I   CK G L+
Sbjct: 437 DQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLE 496

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           EA+ + ++ME     P   +F  ++     +    +A +  ++M+ RGLL
Sbjct: 497 EALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 168/350 (48%), Gaps = 3/350 (0%)

Query: 224 SVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           +V +A   F+ M   R  P +  F  +L  + K      A  +  +++  G +PD++  N
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++ +  MG++T  F +L ++ ++G  P+  +   LI+ LC   ++++A     ++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G + + V+Y TLI+G CK        ++L  +  R   PN   Y  I+ A  K + + E 
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEA 218

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             L  EM   G   DV  Y+ +I   C  G+LKEA+ + NEM   +++P   ++ ++V  
Sbjct: 219 YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +G + EA      M+   +   P   T   L++      +V+ A+ V++ +   G  
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACV--KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 336

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            +V+ +TI I+    N  V EA +   +M   +++P   T++ L+ GL K
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 130/320 (40%), Gaps = 37/320 (11%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I+ +N +L  +A+M   + A  L   +  KG  P+  +  +LI   C M ++      
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G   D VT  TLI G C   ++ +     D ++ +G   NQ++Y  ++    K
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +    ++L+ ++      P+V  Y+ +I   CK   + EA  +++EM    +S    +
Sbjct: 177 IGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVT 236

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +++GF  +G L EA     EMV                                   
Sbjct: 237 YSTLIYGFCIEGKLKEAIGLLNEMV----------------------------------- 261

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
              K    NVY + I + +L   G VKEA S    M+ A V P   T++ LM G   +Y 
Sbjct: 262 --LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 576 RQIAAEITEKVRKMAAERQI 595
            + A  +   +  M     +
Sbjct: 320 VKKAQHVFNAMSLMGVTPDV 339



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 37/214 (17%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           Q N V     Y +LI  L K  +   VW L++EMR                         
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR----------------------- 403

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
                        G   D   +  L+D LCKN  +  A  LF++M+++  +P++  FT L
Sbjct: 404 -------------GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTIL 450

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L G CK G+L +A+ V   +   G+  ++  YN +++G+ + G + +A  +L +M   GC
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGC 510

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
            PNA ++  +I AL + ++ ++A +   +M   G
Sbjct: 511 IPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 217/470 (46%), Gaps = 46/470 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVL- 197
           Y  LI    + R+    +A    + +   Q +  +V V+  L+R    A+   +A++VL 
Sbjct: 106 YSILIDCCCRARRLDLAFAFFGCLLR---QGMKADVIVVSSLLRGLCDAKRTDEAVDVLF 162

Query: 198 DEMPKYGCEPDEFVFGCLLDALC------------------------------------- 220
             MP+ GC PD   +  +L ++C                                     
Sbjct: 163 HRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLF 222

Query: 221 KNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           K   V EA  LF EM ++   P++  + S+++  CK   + +A+ +L QM   G +PD V
Sbjct: 223 KEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNV 282

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            YN L+ GY+ +G+   A  + KEM  +G  PN  + +  +  LC+  ++EEA   F  M
Sbjct: 283 TYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSM 342

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
              G + ++++Y+TL+ G+  +  +     + + M++ GI+PNQ  +  ++  + K   +
Sbjct: 343 LAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMV 402

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            E + +  +M+K G  PDV  Y  VI   C++G + +A++ +N M    + P    +  +
Sbjct: 403 REAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCL 462

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + GF   G L++A E   E+  +GL   P   +  +L+N L +  +V  A+ ++  I+  
Sbjct: 463 IQGFCTHGDLVKAEELVYEIRNKGL--GPCILSFASLINHLCKEGRVFEAQRIFDMIIRT 520

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           G + +V  +T  I      G + EA      M+   + P   T+  L+ G
Sbjct: 521 GEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNG 570



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 204/418 (48%), Gaps = 12/418 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y ++I +L K R       ++ +M     +P  +T   +  L+  +++   
Sbjct: 244 PNVV----TYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVT---YNTLIHGYSTLGQ 296

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
            K+A+ +  EM   G  P+       +  LCK+  ++EA + FD M  +  K ++  +++
Sbjct: 297 WKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYST 356

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL+G+   G LV+   +   M   G  P+  V+N L++GYA+ G + +A  + ++M+++G
Sbjct: 357 LLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRG 416

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            +P+  +Y  +I A CRM  M++A   F  M   G E +   Y  LI GFC    + +  
Sbjct: 417 LNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAE 476

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E++  +  +G+ P  L++  ++    K+  + E   +   + + G   DV+ +  +I   
Sbjct: 477 ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C +G++ EA  V + M +  + P   ++  +V+G    G + +    F+E++ +G+   P
Sbjct: 537 CLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGV--KP 594

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
              T   +L+ L  A +   AK+++  ++  G  + +  ++I +  L  N   +EA +
Sbjct: 595 TTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAIT 652



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 192/392 (48%), Gaps = 3/392 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+  +A+A  +     + + M + G  P++ VF  L++   K   V+EA  +F++M++R 
Sbjct: 357 LLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRG 416

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +  + ++++ +C+ G + +A      M D G EP+  VY  L+ G+   G +  A 
Sbjct: 417 LNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAE 476

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL+ E+R KG  P   S+  LI  LC+  ++ EA R F  + R+G +ADV  +T+LI G+
Sbjct: 477 ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C   K+   + + D+M+  GI P+ +TY  ++    K   +++ + L  E+   G  P  
Sbjct: 537 CLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTT 596

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y +++      G    A  ++ EM  + ++    ++ +++ G     C  EA   F++
Sbjct: 597 FTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQK 656

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           +    +        L  +++ + +A++ E A+ +++ I   G    V  +TI + +L   
Sbjct: 657 LCAMNV--KFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKE 714

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           G V+EA      M+ + + P       ++R L
Sbjct: 715 GSVEEAEGVFSVMLKSGLSPTSHFINVIVRTL 746



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 36/298 (12%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           V+  L++ F +   + KA E++ E+   G  P    F  L++ LCK   V EA ++FD +
Sbjct: 458 VYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMI 517

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            R   K  +  FTSL+ G+C  GK+ EA  V   M   G EPDIV Y  L++G  + G++
Sbjct: 518 IRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRI 577

Query: 295 TDAFELLKEMRRKGCDPNA-----------------------------------NSYTVL 319
            D   L +E+  KG  P                                      +Y++L
Sbjct: 578 DDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSIL 637

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LCR    EEA   F ++     + D+V    +IS   K+R+ +    +  S+   G+
Sbjct: 638 LTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGL 697

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           +P   TY  +M    K+  +EE   +   M K G  P     NV++R   + GE+ +A
Sbjct: 698 VPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKA 755



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 147/316 (46%), Gaps = 5/316 (1%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA-NR 334
           P +  Y+ L+    +  ++  AF     + R+G   +    + L++ LC  ++ +EA + 
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI-QRGILP-NQLTYLHIMLA 392
            F  M   GC  D ++Y+T++   C   +     +IL   + Q G  P N + Y  ++  
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHG 220

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K+ ++ E  +L  EM + G  P+V  YN VI   CK   + +A  +  +M    + P 
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPD 280

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++  ++HG+   G   +A   FKEM  RG++  P   T    +  L +  ++E A++ 
Sbjct: 281 NVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVI--PNTVTCSTFVAFLCKHGRIEEAREF 338

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  ++ KG +LN+ +++  +H   + G + +  +    M+   ++P    F  L+ G  K
Sbjct: 339 FDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAK 398

Query: 573 LYNRQIAAEITEKVRK 588
               + A  I E ++K
Sbjct: 399 CGMVREAMFIFEDMQK 414


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 3/394 (0%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            +F I    +A   M+ KA+++ ++M ++G  P+   +G L+DALCK   V +A   F++
Sbjct: 375 HIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQ 434

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  E   P++  F SL+YG C   K   A+ ++ +M D G  P+ V +N L+     +G+
Sbjct: 435 MINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGR 494

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +   L+  M   G  P+A SYT LI   C   + +EA + F  M   G     VTY T
Sbjct: 495 VMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNT 554

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+C + +ID  Y +   M+++G+ P  +TY  I+    + +   E  EL   M   G
Sbjct: 555 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 614

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
              D+  YN+++   CK   + EA  ++  + +  L     +F +M+   L  G   +A 
Sbjct: 615 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 674

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           + F  +   GL+  P   T + +  +L+    +E    ++S +   G   N       + 
Sbjct: 675 DLFAAIPANGLV--PNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVR 732

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            L   G +  A +Y   + + +   +  T + LM
Sbjct: 733 RLLHRGDISRAGAYLSKLDERNFSVEASTTSLLM 766



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 194/442 (43%), Gaps = 43/442 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I  L K + F     + ++M     KP   T   +  L+  + S    K+ +++L+
Sbjct: 237 YTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYT---YNCLIHGYLSIGKWKEVVQMLE 293

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +PD + +G LL+ LCKN   +EA   FD M R+  KP +  +  L++G+  +G
Sbjct: 294 EMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKG 353

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L E    L  M + G  PD  ++N   S YA+ G +  A ++  +MR+ G  PN  +Y 
Sbjct: 354 ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYG 413

Query: 318 VLIQALCRM-----------------------------------EKMEEANRAFVEMERS 342
            LI ALC++                                   +K E A     EM   
Sbjct: 414 ALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ 473

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   + V + TLI   C   ++     ++D M   G+ P+  +Y  ++  +      +E 
Sbjct: 474 GICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEA 533

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            ++   M  IG  P    YN ++   C    + +A  ++ EM    ++PG  ++  ++HG
Sbjct: 534 EKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHG 593

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                   EA E +  M+  G  +     T   +LN L ++  V+ A  ++  + +KG +
Sbjct: 594 LFQTKRFSEAKELYLNMINSG--TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQ 651

Query: 523 LNVYAWTIWIHSLFSNGHVKEA 544
           LN+  +TI I +L   G  ++A
Sbjct: 652 LNIITFTIMIGALLKGGRKEDA 673



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 197/430 (45%), Gaps = 6/430 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK- 202
           L+K L   ++ G    ++ +   E   +  T  + IL++   + +  ++A+E+L  M   
Sbjct: 131 LLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADD 190

Query: 203 YG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
           +G  C P+   +  +++       V +   LF EM +R   P +  +T+++ G CK    
Sbjct: 191 HGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLF 250

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A+ V  QM D GF+P+   YN L+ GY  +GK  +  ++L+EM  +G  P+  +Y  L
Sbjct: 251 DRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSL 310

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+  +  EA   F  M R G +  V TY  LI G+     +   +  LD M++ G+
Sbjct: 311 LNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGL 370

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+   +     A+ K   +++ +++  +MR+ G  P+V NY  +I   CKLG + +A  
Sbjct: 371 SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 430

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            +N+M    ++P    F  +V+G         A E   EM+ +G+   P       L+ +
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGI--CPNAVFFNTLICN 488

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L    +V   + +   +   G   + +++T  I      G   EA      M+   + P 
Sbjct: 489 LCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPT 548

Query: 560 PDTFAKLMRG 569
             T+  L+ G
Sbjct: 549 EVTYNTLLHG 558



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 167/352 (47%), Gaps = 10/352 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V+    Y ALI +L K+ +         +M  E   P ++   VF  L+    +  
Sbjct: 406 SPNVVN----YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV---VFNSLVYGLCTVD 458

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247
             ++A E++ EM   G  P+   F  L+  LC    V E  +L D M     +P    +T
Sbjct: 459 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYT 518

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+ G+C  G+  EA+ V   M   G  P  V YN LL GY    ++ DA+ L +EM RK
Sbjct: 519 PLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRK 578

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P   +Y  ++  L + ++  EA   ++ M  SG + D+ TY  +++G CKS  +D  
Sbjct: 579 GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEA 638

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           +++  S+  +G+  N +T+  ++ A  K    E+ ++L   +   G VP+V  Y +V   
Sbjct: 639 FKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAEN 698

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             + G L+E  ++++ ME    +P +     +V   L +G +  A  Y  ++
Sbjct: 699 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKL 750



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 175/410 (42%), Gaps = 16/410 (3%)

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K  P L T   + IL+ RF     ++        + K G   D      LL  LC    V
Sbjct: 85  KVAPNLCT---YSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRV 141

Query: 226 KEAAKLFDEMRERFK-----PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG---FEPD 277
            EA    D + +R       P    +T LL G C E +  EA  +L  M D       P+
Sbjct: 142 GEA---MDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPN 198

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V Y+ +++G+   G++   + L  EM  +G  P+  +YT +I  LC+ +  + A   F 
Sbjct: 199 VVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQ 258

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           +M  +G + +  TY  LI G+    K     ++L+ M  RG+ P+  TY  ++    K  
Sbjct: 259 QMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNG 318

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
              E       M + G  P VS Y ++I      G L E  +  + M    LSP    F 
Sbjct: 319 RCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFN 378

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +    +   G + +A + F +M   GL  +P      AL+++L +  +V+ A+  ++ ++
Sbjct: 379 IFFSAYAKCGMIDKAMDIFNKMRQHGL--SPNVVNYGALIDALCKLGRVDDAEVKFNQMI 436

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            +G   N+  +   ++ L +    + A     +M+D  + P    F  L+
Sbjct: 437 NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLI 486



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 13/376 (3%)

Query: 224 SVKEAAKLFDEMRERFKP-SLRHFTSLLYGW----CKEGKLVEAKYV--LVQMKDAGFEP 276
            + +A KLFDE+    +P S+R F  LL       C     +   +   +V+       P
Sbjct: 29  GLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAP 88

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           ++  Y+ L+  + +MG +   F     + + G   +  +   L++ LC  +++ EA    
Sbjct: 89  NLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVL 148

Query: 337 VE-MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ---RGILPNQLTYLHIMLA 392
           ++ M   GC  D V+YT L+ G C  ++ +   E+L  M     R   PN ++Y  ++  
Sbjct: 149 LQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVING 208

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
              + ++++   L  EM   G  PDV  Y  VI   CK      A  V+ +M      P 
Sbjct: 209 FFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPN 268

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++  ++HG+L  G   E  +  +EM  RGL   P   T  +LLN L +  +   A+  
Sbjct: 269 NYTYNCLIHGYLSIGKWKEVVQMLEEMSARGL--KPDCYTYGSLLNYLCKNGRCREARFF 326

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  ++ KG +  V  + I IH   + G + E  S+   M++  + P    F        K
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAK 386

Query: 573 LYNRQIAAEITEKVRK 588
                 A +I  K+R+
Sbjct: 387 CGMIDKAMDIFNKMRQ 402



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+       +    + L  EM ++   P ++T     IL   F + R   +A E+  
Sbjct: 552 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNT--ILHGLFQTKRF-SEAKELYL 608

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M   G + D + +  +L+ LCK++ V EA K+F  +  +  + ++  FT ++    K G
Sbjct: 609 NMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 668

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A  +   +   G  P++V Y  +     + G + +   L   M + G  PN+    
Sbjct: 669 RKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLN 728

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L++ L     +  A     +++      +  T + L+S F
Sbjct: 729 ALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIF 769


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 178/325 (54%), Gaps = 3/325 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL+  +AS+  + +A +V +EM +   E D +V+  ++   C+  +V+ A+ LFDEM 
Sbjct: 255 YTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMI 314

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R   P+   F +L+ G CK G++  A+ +L +M+  G + ++V++N ++ GY + G M 
Sbjct: 315 CRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMD 374

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +AF L   M RKG + +  +Y +L   LC++ + EEA R    M   G   +VVT  T I
Sbjct: 375 EAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFI 434

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
             +C+   +      L ++ +RG++PN +TY  ++ A+ K E++++   L  EM + G +
Sbjct: 435 EIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLL 494

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  Y  +I   C + ++ EA+ ++NEM    +     ++  ++ G   +G   EA + 
Sbjct: 495 PDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKL 554

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSL 500
           + EM+  GL+  P     +AL+ SL
Sbjct: 555 YDEMMRMGLI--PDDRVFEALVGSL 577



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 173/384 (45%), Gaps = 3/384 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           V +A E+++EM   G  P  F +  LL+A       +   ++   M RE    SL  +T 
Sbjct: 198 VGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTYTI 257

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  +    ++ EA+ V  +M +   E D+ VY +++S   + G +  A  L  EM  +G
Sbjct: 258 LIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRG 317

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  ++  LI  +C+  +ME A     EM+  G + +VV + T++ G+CK   +D  +
Sbjct: 318 IVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAF 377

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + D M ++G   +  TY  +     K    EE   ++  M + G  P+V      I + 
Sbjct: 378 RLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIY 437

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+ G L E       +E   + P   ++  ++  +     + +A     EMV +GLL  P
Sbjct: 438 CQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLL--P 495

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  +L++      KV+ A  +++ ++ KG   NV  +T  I  L   G   EA    
Sbjct: 496 DVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLY 555

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
            +MM   ++P    F  L+  L K
Sbjct: 556 DEMMRMGLIPDDRVFEALVGSLHK 579



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 211/493 (42%), Gaps = 61/493 (12%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKM-----RKFGAVWALMEEMRKEKPQLITTEVFV 178
           Y ++A+++      +   R L+ SL        R    V +L++E   E P  + T +  
Sbjct: 69  YRLFAARK------FAAMRTLLDSLVTTEVETKRPVSDVVSLVDECEFE-PHFVET-LCD 120

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFG--CLLDALCKNSSVKEAAKLFDEMR 236
           +L R  A  RM + A++V D    Y  E    V G  C      K + V+   + F  M 
Sbjct: 121 MLFRVCADNRMFRDALKVFD----YVMEKGLVVEGRSCFXK---KCNKVELCVRFFRRMV 173

Query: 237 E--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           E  R    ++  T ++   C+ G++  AK ++ +M   G  P +  YN LL+        
Sbjct: 174 ESGRVDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDR 233

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
               E+L  M R+G   +  +YT+LI+     E++ EA + + EM     E DV  YT++
Sbjct: 234 EGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSM 293

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTY---------------------------- 386
           IS  C++  + R   + D MI RGI+PN  T+                            
Sbjct: 294 ISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGV 353

Query: 387 -LHIML------AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            L++++       + K+  ++E   L   M + G   DV  YN++    CKL   +EA  
Sbjct: 354 DLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKR 413

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V N M    ++P   +    +  +  +G L E   + + +  RG++  P   T   L+++
Sbjct: 414 VLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVV--PNIVTYNTLIDA 471

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             + +KV+ A  + + +V KG   +V+ +T  IH       V EA     +M+   +   
Sbjct: 472 YSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGN 531

Query: 560 PDTFAKLMRGLKK 572
             T+  ++ GL K
Sbjct: 532 VKTYTAIISGLSK 544


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/542 (23%), Positives = 230/542 (42%), Gaps = 67/542 (12%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN +     Y+ ++    K         L++ M++     I  E + I +        +
Sbjct: 288 HPNVI----TYKLMLMGFCKEGMLEEAKTLVDTMKR-NANFINLESYNIWLLGLIRNGKL 342

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
            +A  VL EM   G EPD + +  ++D LCKN  + +A  L   M R    P    +++L
Sbjct: 343 LEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTL 402

Query: 250 LYGWC-----------------------------------KEGKLVEAKYVLVQMKDAGF 274
           L+G+C                                   KEG++ EA+ +L +M + G+
Sbjct: 403 LHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGY 462

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-----------------------CDP 311
             D V  N +++     G++  A E++  M   G                       C P
Sbjct: 463 GVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTP 522

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +Y+ +I  LC+  ++++A + F+EM   G + D   Y T I  FC+  KI   +++L
Sbjct: 523 DLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVL 582

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M +RG      TY  ++L    K ++ E   L+ EMR+ G  PDV  YN ++   C+ 
Sbjct: 583 KDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEG 642

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G + +A +V +EM    +SP   SF +++  F  + C  +A     E+     +   +  
Sbjct: 643 GRINDAPSVLDEMLQKGISPNISSFRILIKAFC-KACDFKASHEVFEIALN--VCGHKEA 699

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               + N LL   KV  AK+++   + +  ++  + +   I  L  +  ++ A      +
Sbjct: 700 LYTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRL 759

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEK 611
           +D      P +F  ++ G  K+ N+ +A E+ E++ +MA+E     K Y       L+ K
Sbjct: 760 IDKGYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMASESNKENKAYPNVKGHILRNK 819

Query: 612 AK 613
            K
Sbjct: 820 NK 821



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 188/421 (44%), Gaps = 26/421 (6%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F IL+R +  A +  K +E+L +M   G  P+  ++  L+ + CK     +A KL D+M
Sbjct: 184 TFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKM 243

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK---DAGF-EPDIVVYNNLLSGYAQ 290
           RE    P +  F S +   C  GK++EA  +   M+   + G   P+++ Y  +L G+ +
Sbjct: 244 REDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCK 303

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            G + +A  L+  M+R     N  SY + +  L R  K+ EA     EM   G E D+ +
Sbjct: 304 EGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYS 363

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y  ++ G CK+  +     ++  MI+ GILP+ +TY  ++  +  K ++ E   L+ EM 
Sbjct: 364 YNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMI 423

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
              C P+    NV++    K G + EA N+  +M        T +  ++++     G L 
Sbjct: 424 SNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLD 483

Query: 471 EACEYFKEM----------VGRGLLS-----------APQYGTLKALLNSLLRAQKVEMA 509
           +A E    M          +G   +             P   T   +++ L +A +++ A
Sbjct: 484 KAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDA 543

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           K  +  +++KG + +   +  +IHS    G +  A     DM          T+  L+ G
Sbjct: 544 KKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILG 603

Query: 570 L 570
           L
Sbjct: 604 L 604



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 217/468 (46%), Gaps = 38/468 (8%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRF 184
           +  KQP    S  +Y  L+KS  +  +   V  L ++M   +  P+  T   F +L+   
Sbjct: 105 FPEKQP----SIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYT---FNLLIGLL 157

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
             +  ++ A E+ D+MP  GCEP+EF FG L+   C+     +  +L  +MR     P+ 
Sbjct: 158 CDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNN 217

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             + +L+  +CKEGK  +A+ ++ +M++ G  P +  +N+ +S     GK+ +A  + ++
Sbjct: 218 VLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRD 277

Query: 304 MRRKG----CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           M+         PN  +Y +++   C+   +EEA      M+R+    ++ +Y   + G  
Sbjct: 278 MQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLI 337

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           ++ K+   + +L  M+  GI P+  +Y  +M    K   L +   LMG M + G +PD  
Sbjct: 338 RNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTV 397

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            Y+ ++   C  G++ EA N+ +EM + + SP T +  V++H    +G + EA    ++M
Sbjct: 398 TYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKM 457

Query: 480 V--GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS-------------------CIVT 518
              G G+ +      + AL N+    + +E+   +W+                    I  
Sbjct: 458 NEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISG 517

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP---DTF 563
           K C  ++  ++  I  L   G + +A    ++MM   + P     DTF
Sbjct: 518 KKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTF 565



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 155/372 (41%), Gaps = 44/372 (11%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERF---KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           L+  L K+    +A   F  +R  F   +PS+  +  LL    +E ++    ++   M  
Sbjct: 81  LVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVL 140

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
           A   P+   +N L+      G + DA EL  +M  +GC+PN  ++ +L++  CR     +
Sbjct: 141 ARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASK 200

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL----------- 380
                 +M   G   + V Y TLIS FCK  K     +++D M + G++           
Sbjct: 201 GLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRIS 260

Query: 381 ----------------------------PNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
                                       PN +TY  +++   K+  LEE   L+  M++ 
Sbjct: 261 ALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRN 320

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
               ++ +YN+ +    + G+L EA  V  EM    + P   S+ +++ G    G L +A
Sbjct: 321 ANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDA 380

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                 M+  G+L  P   T   LL+      KV  A ++   +++  C  N Y   + +
Sbjct: 381 RMLMGLMIRNGIL--PDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLL 438

Query: 533 HSLFSNGHVKEA 544
           HSL+  G + EA
Sbjct: 439 HSLWKEGRISEA 450



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 141/300 (47%), Gaps = 8/300 (2%)

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +P I +YN LL    +  ++     L K+M      P A ++ +LI  LC    +E+A  
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F +M   GCE +  T+  L+ G+C++    +  E+L  M   GILPN + Y  ++ +  
Sbjct: 169 LFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFC 228

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM----EAASLS 450
           K+ +  +  +L+ +MR+ G VP V  +N  I   C  G++ EA  ++ +M    E     
Sbjct: 229 KEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPH 288

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMV-GRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           P   ++ +M+ GF  +G L EA      M      ++   Y      L  L+R  K+  A
Sbjct: 289 PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNI---WLLGLIRNGKLLEA 345

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
             V   ++  G E ++Y++ I +  L  NG + +A      M+   ++P   T++ L+ G
Sbjct: 346 WIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHG 405


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 187/379 (49%), Gaps = 12/379 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           QPN       Y  ++  + K     +   L+ +M  RK KP ++T   + I++       
Sbjct: 227 QPNQF----TYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVT---YTIIIDNLCKDG 279

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +  A+    EM   G + + F +  L+ + C      + A+L  +M  R   P++  F+
Sbjct: 280 RLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFS 339

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+    KEGKL EAK +  +M   G EP+ + YN+L+ G     ++ +A +++  M  K
Sbjct: 340 ALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSK 399

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GCDP+  +Y +LI   C+ +++++  R F +M   G  AD VTY+TLI GFC+SRK+   
Sbjct: 400 GCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVA 459

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++   M+ +G+ P  +TY  ++       ELEE + ++ +M K     D+  YN++I  
Sbjct: 460 KKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHG 519

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C   ++ +A +++  + +  +     S+ +M+ G   +  L EA   F++M   G    
Sbjct: 520 MCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGY--E 577

Query: 488 PQYGTLKALLNSLLRAQKV 506
           P   T   L+ + LR   +
Sbjct: 578 PDGCTYNTLIRAHLRGNDI 596



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 210/426 (49%), Gaps = 6/426 (1%)

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           + +  P LIT    V           V +A++++  M   GC+P++F +G +L+ +CK+ 
Sbjct: 188 LSQHVPDLITLNTIV---NGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSG 244

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           +   A  L  +M  R  KP +  +T ++   CK+G+L +A     +M+  G + ++  YN
Sbjct: 245 NTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYN 304

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +L+  +   G+  D  +LL++M  +   PN  +++ LI +L +  K+ EA   + EM   
Sbjct: 305 SLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITR 364

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G E + +TY +LI G C  +++D   +++D M+ +G  P+  TY  ++    K +++++ 
Sbjct: 365 GIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDG 424

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L  +M   G + D   Y+ +I+  C+  +L  A  V+ EM +  + PG  ++ +++ G
Sbjct: 425 MRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDG 484

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G L EA     +M           G    +++ +  A KV+ A  ++  + +KG +
Sbjct: 485 LCDNGELEEALGILDQM--HKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVK 542

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            ++ ++ I +  L     + EA +    M +    P   T+  L+R   +  +   + ++
Sbjct: 543 RDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQL 602

Query: 583 TEKVRK 588
            E++++
Sbjct: 603 IEEMKR 608



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 204/407 (50%), Gaps = 8/407 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           +  L   L++ +++  V AL ++M  +    I  +++   I++  F   R +  A   + 
Sbjct: 93  FNRLFGLLARTKQYDLVLALCKQMELKG---IAYDLYTLNIMINCFCRRRKLGFAFSAMG 149

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           ++ K G EP+   F  LL+ LC    V EA +L D M   +  P L    +++ G C + 
Sbjct: 150 KIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKD 209

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  ++ +M   G +P+   Y  +L+   + G    A +LL++M  +   P+  +YT
Sbjct: 210 RVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYT 269

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  LC+  ++++A   F EME  G +A+V TY +LI  FC   + D   ++L  MI R
Sbjct: 270 IIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR 329

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +T+  ++ +  K+ +L E  +L  EM   G  P+   YN +I   C    L EA
Sbjct: 330 KITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEA 389

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + + M +    P   ++ ++++GF     + +    F++M  RG+++     T   L+
Sbjct: 390 NQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTV--TYSTLI 447

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
               +++K+ +AK V+  +V++G    +  + I +  L  NG ++EA
Sbjct: 448 QGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEA 494



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 11/309 (3%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARM 189
           PN V     + ALI SL K  K      L  EM  R  +P  IT   +  L+    + + 
Sbjct: 333 PNVV----TFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTIT---YNSLIYGLCNDKR 385

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +A +++D M   GC+PD + +  L++  CK   V +  +LF +M  R        +++
Sbjct: 386 LDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYST 445

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C+  KL+ AK V  +M   G  P I+ Y  LL G    G++ +A  +L +M +  
Sbjct: 446 LIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCK 505

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            + +   Y ++I  +C   K+++A   F  +   G + D+ +Y  ++SG CK   +    
Sbjct: 506 MELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEAD 565

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   M + G  P+  TY  ++ AH +  ++   V+L+ EM++ G   D S   +V+ + 
Sbjct: 566 ALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDML 625

Query: 429 CKLGELKEA 437
              GEL ++
Sbjct: 626 SS-GELDKS 633



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 157/332 (47%), Gaps = 9/332 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +LI S     ++     L+ +M  RK  P ++T   F  L+        + +A ++ 
Sbjct: 302 TYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVT---FSALIDSLVKEGKLTEAKDLY 358

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +EM   G EP+   +  L+  LC +  + EA ++ D M  +   P +  +  L+ G+CK 
Sbjct: 359 NEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKA 418

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +   +  +M   G   D V Y+ L+ G+ Q  K+  A ++ +EM  +G  P   +Y
Sbjct: 419 KQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTY 478

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC   ++EEA     +M +   E D+  Y  +I G C + K+D  + +  S+  
Sbjct: 479 AILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPS 538

Query: 377 RGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           +G+  +  +Y +IML+   K+  L E   L  +M++ G  PD   YN +IR   +  ++ 
Sbjct: 539 KGVKRDIQSY-NIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDIT 597

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
            +V +  EM+    S    S V +V   L  G
Sbjct: 598 TSVQLIEEMKRCGFSSDA-STVKIVMDMLSSG 628



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 164/349 (46%), Gaps = 7/349 (2%)

Query: 227 EAAKLFDEM-RERFKPSLRHFTSL--LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           +A  LF  M R R  P++  F  L  L    K+  LV A  +  QM+  G   D+   N 
Sbjct: 73  DAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLA--LCKQMELKGIAYDLYTLNI 130

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           +++ + +  K+  AF  + ++ + G +PN  ++  L+  LC   ++ EA      M  S 
Sbjct: 131 MINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQ 190

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              D++T  T+++G C   ++    +++  M+  G  PNQ TY  I+    K       +
Sbjct: 191 HVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASAL 250

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +L+ +M      P V  Y ++I   CK G L +A++ ++EME   +     ++  ++  F
Sbjct: 251 DLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSF 310

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G   +  +  ++M+ R +   P   T  AL++SL++  K+  AKD+++ ++T+G E 
Sbjct: 311 CSFGRWDDGAQLLRDMITRKI--TPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEP 368

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           N   +   I+ L ++  + EA      M+     P   T+  L+ G  K
Sbjct: 369 NTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCK 417



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 12/308 (3%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG   + K  DA  L + M R    P    +  L   L R ++ +       +ME  G
Sbjct: 62  LRSGLVDIKK-DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKG 120

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              D+ T   +I+ FC+ RK+   +  +  + + G  PN +T+  ++     +  + E V
Sbjct: 121 IAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAV 180

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           EL+  M     VPD+   N ++   C    + EAV++   M A    P   ++  +++  
Sbjct: 181 ELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRM 240

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G    A +  ++M  R +   P   T   ++++L +  +++ A   +S + TKG + 
Sbjct: 241 CKSGNTASALDLLRKMEHRKI--KPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKA 298

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLY 574
           NV+ +   I S  S G   +      DM+   + P   TF+ L+  L         K LY
Sbjct: 299 NVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLY 358

Query: 575 NRQIAAEI 582
           N  I   I
Sbjct: 359 NEMITRGI 366


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 208/434 (47%), Gaps = 7/434 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V  +L+K+L +  +    W  ++EM+ +   L    +  + +  + S   +    ++L E
Sbjct: 188 VCNSLLKALLESEQLNLAWDFLKEMKSQGLGL-NASIISLFISGYCSQGNIDTGWKLLME 246

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G +PD   +  ++D+LCK S +KEA  +  +M +          +S++ G+CK GK
Sbjct: 247 MKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGK 306

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             EA  VL   +     P+I V+N+ +S     G M  A ++ ++M   G  P+  SYT 
Sbjct: 307 SEEAMDVL---EVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTT 363

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++   C+++ +  A +   +M + G    V TYT LI   CK   ++    +   MI  G
Sbjct: 364 MMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEG 423

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++P+ ++Y  +M  + KK  L++  EL+  MR  G  PD+  YN++I    K G + EA 
Sbjct: 424 LVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAK 483

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           ++ +E+     SP   +F  ++ GF  +G   EA   F  M    L   P   T  ALLN
Sbjct: 484 DILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHL--EPDVVTCSALLN 541

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R + +  A  ++  ++  G + +V  +   IH   S G++ +AC     M++  +MP
Sbjct: 542 GYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMP 601

Query: 559 QPDTFAKLMRGLKK 572
              T   L+ G +K
Sbjct: 602 NNITHHALVLGYEK 615



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 21/281 (7%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
           + + +    Y    D+  AL K L KM K           R  +P + T   + +L+   
Sbjct: 359 FSYTTMMAGYCKVKDISNAL-KYLGKMLK-----------RGIRPSVAT---YTLLIDSC 403

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
                ++ A  +   M   G  PD   +  L++   K   +++A +L   MR     P L
Sbjct: 404 CKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDL 463

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             +  L++G  K G + EAK +L ++   GF PD+V + N++ G++  G   +AF L   
Sbjct: 464 VTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFY 523

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M     +P+  + + L+   CR   M EAN  F +M  +G +ADV+ Y +LI GFC    
Sbjct: 524 MSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGN 583

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           ID    ++  MI+ GI+PN +T+  ++L +EKK     CVE
Sbjct: 584 IDDACHLVSMMIEHGIMPNNITHHALVLGYEKK-----CVE 619



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 195/449 (43%), Gaps = 54/449 (12%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD-------------------EFVFG 213
           T E    ++    S  M  KA+++L  +  Y    +                   E V+G
Sbjct: 96  TVESVCTMIHILVSGNMNHKAMDLLLHLISYNSGEEGWHNIFLKIHETHTKRRVLETVYG 155

Query: 214 CLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
            L++   K +  + A KL  +MR     P +    SLL    +  +L  A   L +MK  
Sbjct: 156 MLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQ 215

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G   +  + +  +SGY   G +   ++LL EM+  G  P+  +YT++I +LC+M  ++EA
Sbjct: 216 GLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEA 275

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD-------------------- 372
                +M + G   D V+ ++++ G+CK  K +   ++L+                    
Sbjct: 276 TSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCT 335

Query: 373 ------------SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
                        M + G++P+  +Y  +M  + K +++   ++ +G+M K G  P V+ 
Sbjct: 336 DGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVAT 395

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y ++I   CK G ++ A  ++  M    L P   S+  +++G+  +G L +A E    M 
Sbjct: 396 YTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMR 455

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             G+  +P   T   L++ L++   V  AKD+   +  +G   +V  +T  I    + G+
Sbjct: 456 SAGV--SPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGN 513

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            +EA      M +  + P   T + L+ G
Sbjct: 514 FEEAFLLFFYMSEHHLEPDVVTCSALLNG 542


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 208/443 (46%), Gaps = 45/443 (10%)

Query: 95  LQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW-ASKQPNYVHSYDVYRALIKSLSKMRK 153
           L   GV+  P +    I     AG L     +  A+  P+       Y AL+ + S+  +
Sbjct: 132 LHGEGVLHHPRVLATAIRVMARAGRLAEASALLDAAPGPDA----GAYTALVSAFSRAGR 187

Query: 154 FGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211
           F    A+   M     +P ++T  V + +  + A     K+ +E++  M ++G  PD + 
Sbjct: 188 FRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW--KEVVELVASMKEHGVAPDRYT 245

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
           +  L+    + +  KEAA++FDEM                                  K 
Sbjct: 246 YNTLISCCRRRALYKEAAQVFDEM----------------------------------KA 271

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
           +GFEPD V +N+LL  Y +  +  +A E+++EM R GC P+  +Y  LI +  +   +E+
Sbjct: 272 SGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQ 331

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A     EME  G + DVVTYTTLISG  ++ KID      D M++ G  PN  TY  ++ 
Sbjct: 332 AVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIK 391

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            H  + +  E + +  E R  G VPD+  +N ++ +  + G   E   V+ EM+ A   P
Sbjct: 392 MHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIP 451

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
             D++V ++  +   G    A + +K M+  G+   P   T  A+L++L R  + E A+ 
Sbjct: 452 ERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIY--PDVSTYNAVLSALARGGRWEQAEK 509

Query: 512 VWSCIVTKGCELNVYAWTIWIHS 534
           +++ +  + C+ + Y+++  +H+
Sbjct: 510 LFAEMEERDCKPDEYSYSSLLHA 532



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 156/327 (47%), Gaps = 7/327 (2%)

Query: 141 YRALIKSLSKMR-KFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  ++   SKM   +  V  L+  M++    P   T    +   RR A   + K+A +V 
Sbjct: 210 YNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRA---LYKEAAQVF 266

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           DEM   G EPD+  F  LLD   K     EA ++  EM R    PS+  + SL+  + K+
Sbjct: 267 DEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKD 326

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G L +A  +  +M+  G +PD+V Y  L+SG  + GK+  A     EM R GC PN  +Y
Sbjct: 327 GLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI+      K  E    F E   +G   D+VT+ TL++ F ++        +   M +
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKK 446

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G +P + TY+ ++ ++ +    +  +++   M + G  PDVS YN V+    + G  ++
Sbjct: 447 AGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQ 506

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGF 463
           A  ++ EME     P   S+  ++H +
Sbjct: 507 AEKLFAEMEERDCKPDEYSYSSLLHAY 533



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 180/408 (44%), Gaps = 43/408 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +  K  A     +EM +   KP L T   +  L++         + + V D
Sbjct: 351 YTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCT---YNALIKMHGVRGKFPEMMAVFD 407

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           E    G  PD   +  LL    +N    E + +F EM++  + P    + SL+  + + G
Sbjct: 408 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  +  +M +AG  PD+  YN +LS  A+ G+   A +L  EM  + C P+  SY+
Sbjct: 468 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 318 VLIQALC---RMEKME--------------------------------EANRAFVEMERS 342
            L+ A     R++KM+                                EA +AF+E+ + 
Sbjct: 528 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 587

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C  D+     ++S + K+R + +  +IL  M +  I  +  TY  +M  + +  + E+C
Sbjct: 588 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 647

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
             ++ E++  G  PD  +YN VI    + G++KEA  +++EM+ + L P   ++ + V  
Sbjct: 648 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           ++      EA E  + MV +G    P   T  +++    R  K+  AK
Sbjct: 708 YVSNSMFEEAIELVRYMVTQG--CKPNERTYNSIVEGYCRNGKLTDAK 753



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 202/477 (42%), Gaps = 78/477 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + +L+    K R+      +++EM +    P ++T   +  L+  +    ++++A+ +  
Sbjct: 281 FNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVT---YNSLISSYVKDGLLEQAVALKQ 337

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G +PD   +  L+  L +   +  A   +DEM R   KP+L  + +L+      G
Sbjct: 338 EMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 397

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--------- 308
           K  E   V  + + AGF PDIV +N LL+ + Q G  ++   + KEM++ G         
Sbjct: 398 KFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYV 457

Query: 309 --------CD------------------PNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                   C                   P+ ++Y  ++ AL R  + E+A + F EME  
Sbjct: 458 SLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER 517

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C+ D  +Y++L+  +  ++++D+   + D +    I P+      ++L + K   L E 
Sbjct: 518 DCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEA 577

Query: 403 VELMGEMRKIGCVPDV-----------------------------------SNYNVVIRL 427
            +   E+R+  C  D+                                   + YN ++ +
Sbjct: 578 EKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHM 637

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             +LG+ ++  N+  E++++ + P   S+  +++ +  +G + EA   F EM   GL   
Sbjct: 638 YSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGL--K 695

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           P   T    + S +     E A ++   +VT+GC+ N   +   +     NG + +A
Sbjct: 696 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDA 752


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 194/439 (44%), Gaps = 49/439 (11%)

Query: 143 ALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           AL+  L + R    +  L+ EM  RK +P ++T   F IL+     AR + +A++V D +
Sbjct: 286 ALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVT---FGILVNHLCKARRIDEALQVFDRL 342

Query: 201 PK------YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--ERFKPSLRHFTSLLYG 252
                    G EPD  +F  L+D LCK    ++   L +EM+     +P+   +  L+ G
Sbjct: 343 RGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDG 402

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           + K G    A  +  QM + G +P+++  N L+ G  + G++  A E   EM+ KG   N
Sbjct: 403 FFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGN 462

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
           A +YT LI A C +  +  A + F EM  SGC  D V Y +LISG C + +++    ++ 
Sbjct: 463 AATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVS 522

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            +   G   ++  Y  ++    KK++LE   EL+ EM + G  PD   YN +I    K G
Sbjct: 523 KLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTG 582

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           +   A  V  +M    L P   ++  ++H +  +  + E  + F EM             
Sbjct: 583 DFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEM------------- 629

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
                                 C  +K    N   + I I +L  N  V  A S   DM 
Sbjct: 630 ----------------------CSTSK-VPPNTVIYNILIDALCRNNDVDRAISLMEDMK 666

Query: 553 DADVMPQPDTFAKLMRGLK 571
              V P   T+  +++G++
Sbjct: 667 VKRVRPNTTTYNAILKGVR 685



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 191/386 (49%), Gaps = 8/386 (2%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           W   +P+ V    ++  LI  L K+ K     +L+EEM+        T  +  L+  F  
Sbjct: 350 WVGVEPDVV----LFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFK 405

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
           A    +A E+  +M + G +P+      L+D LCK+  V  A + F+EM+ +  K +   
Sbjct: 406 AGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAAT 465

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T+L+  +C    +  A     +M  +G  PD VVY +L+SG    G+M DA  ++ +++
Sbjct: 466 YTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLK 525

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             G   + + Y VLI   C+ +K+E       EME +G + D +TY TLIS   K+    
Sbjct: 526 LAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFA 585

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP-DVSNYNVV 424
              ++++ MI+ G+ P+ +TY  I+ A+  K+ ++E +++ GEM     VP +   YN++
Sbjct: 586 TASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNIL 645

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   C+  ++  A+++  +M+   + P T ++  ++ G   +  L +A E    MV    
Sbjct: 646 IDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEA- 704

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAK 510
              P Y T++ L   L    ++E  K
Sbjct: 705 -CRPDYITMEVLTEWLSAVGEIEKLK 729



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/460 (21%), Positives = 195/460 (42%), Gaps = 42/460 (9%)

Query: 119 NLGYRYYMWASKQPNYVHSYD-VYRALIKSLSKMRKFGAVWALMEEMRKE-KPQL-ITTE 175
           +L +  Y+ A    ++ HS   V++  ++  S+          +   RK   P L +T +
Sbjct: 83  SLQFLKYLSAKAPQHHPHSLSSVFQGSLELASRHPNSQTHLLSLHRFRKSTHPTLPLTPK 142

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
              +L++   +AR+V  ++ + +++      P +   G LL  L K+    +A  + DEM
Sbjct: 143 SASLLLQCLENARLVNDSLLLFNQLDPSSKSP-QLCHG-LLRVLLKSGRAGDALHVLDEM 200

Query: 236 RERFKPSLRHFTSLLYG-WCKEGKLV---EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            +           +++G   + G+     E   ++ ++ + G  PD      L+      
Sbjct: 201 PQA-NSGFSVTGEIVFGELVRSGRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGD 259

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            K   A+E+L  + R G   +A S   L+  L R   ++  N    EME+      VVT+
Sbjct: 260 QKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTF 319

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             L++  CK+R+ID   ++ D +  RG                            G    
Sbjct: 320 GILVNHLCKARRIDEALQVFDRL--RG---------------------------KGGSNW 350

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS-PGTDSFVVMVHGFLGQGCLI 470
           +G  PDV  +N +I   CK+G+ ++ +++  EM+  +++ P T ++  ++ GF   G   
Sbjct: 351 VGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFD 410

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            A E F++M   G+   P   TL  L++ L +  +V  A + ++ +  KG + N   +T 
Sbjct: 411 RAHELFRQMNEEGV--QPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTA 468

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            I +     ++  A     +M+ +   P    +  L+ GL
Sbjct: 469 LISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGL 508


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 200/432 (46%), Gaps = 5/432 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y  L+ S  K  +     AL+++M       +  +V + +++   A    ++KA +++D
Sbjct: 231 TYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVD 290

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M +   +   F +  L+  L     V++A  L  EM  E   P++  + +L+ G  K G
Sbjct: 291 IM-RLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTG 349

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A+    +M+  G  PD++ YN+L++GY + G +  A  L  +++R G  P   +Y 
Sbjct: 350 NAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYN 409

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI   CR+  +E A R   EM    C  DV TYT L++G C  R +       D M+ +
Sbjct: 410 ILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSK 469

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+   Y   + A      +    +L  EM   G   D   YNV+I   CK G LK+A
Sbjct: 470 GLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDA 529

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +W +M    L     ++  ++H    +G LIEA   F  MV  GL  +P   T    +
Sbjct: 530 YVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGL--SPSVVTYTIFI 587

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++  R   + +A   +  ++ +G E N   + + +H+L   G  + A  +  +M++  ++
Sbjct: 588 HTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLV 647

Query: 558 PQPDTFAKLMRG 569
           P   T+  L+ G
Sbjct: 648 PNKYTYTLLIDG 659



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 169/361 (46%), Gaps = 8/361 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI  L K     A     +EMR +   P LIT   +  L+  +  A  +K+A+ + 
Sbjct: 337 TYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLIT---YNSLINGYCKAGNLKQALCLF 393

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            ++ + G  P    +  L+D  C+   ++ A +L +EM E    P +  +T L+ G C  
Sbjct: 394 GDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMV 453

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             L   +    +M   G EPD   YN  +S    +G +T+AF+L +EM  +G   +  +Y
Sbjct: 454 RNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTY 513

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            VLI  LC+   +++A   +++M   G   D VTYT LI   C+  ++     I D M+ 
Sbjct: 514 NVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVA 573

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ P+ +TY   +  + ++  L        +M + G  P+   YNV++   C++G  + 
Sbjct: 574 SGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTES 633

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A   ++EM    L P   ++ +++ G   +G  + A   + EM  +G+   P + T  AL
Sbjct: 634 AYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGI--HPDHCTHNAL 691

Query: 497 L 497
            
Sbjct: 692 F 692



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 159/344 (46%), Gaps = 6/344 (1%)

Query: 232 FDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           F EM R    P ++    +L       +  + + V   M   G EP I  YN LL  + +
Sbjct: 182 FQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCK 241

Query: 291 MGKMTDAFELLKEM--RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            G+M  A  LLK+M  R  GC PN  +Y V+I  L R  ++E+A +  V++ R   +A  
Sbjct: 242 AGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQ-LVDIMRLSKKASA 300

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY  LI+G      +++   +L  M   GI+P  +TY  ++    K    E       E
Sbjct: 301 FTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDE 360

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           MR  G +PD+  YN +I   CK G LK+A+ ++ +++ A L P   ++ +++ G+   G 
Sbjct: 361 MRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGD 420

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           L  A    +EM     L  P   T   L+N     + + M +  +  +++KG E + +A+
Sbjct: 421 LEGARRLKEEMTEEDCL--PDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAY 478

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              I +  + G +  A     +MM   +     T+  L+ GL K
Sbjct: 479 NTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCK 522



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 121/277 (43%), Gaps = 5/277 (1%)

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           T      +EM R G  P       +++ L    + ++    + +M + G E  + TY TL
Sbjct: 176 TQCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTL 235

Query: 355 ISGFCKSRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           +  FCK+ ++D+   +L  M  R  G LPN +TY  ++    +K ELE+  +L+  MR +
Sbjct: 236 LDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMR-L 294

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
                   YN +I        +++A  +  EME   + P   ++  ++ G    G    A
Sbjct: 295 SKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAA 354

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              F EM  +GLL  P   T  +L+N   +A  ++ A  ++  +   G    V  + I I
Sbjct: 355 QVKFDEMRAKGLL--PDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILI 412

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
                 G ++ A     +M + D +P   T+  LM G
Sbjct: 413 DGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNG 449



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 13/259 (5%)

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
           AF EM R G    V     ++     + + D    +   M+Q G+ P+  TY  ++ +  
Sbjct: 181 AFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFC 240

Query: 395 KKEELEECVELMGEM--RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           K   +++ V L+ +M  R  GC+P+   YNVVI    + GEL++A  + + M    LS  
Sbjct: 241 KAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMR---LSKK 297

Query: 453 TDSFVV--MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
             +F    ++ G L +  + +A     EM   G++  P   T   L++ L +    E A+
Sbjct: 298 ASAFTYNPLITGLLARDFVEKAGALLLEMENEGIV--PTVVTYNTLIDGLFKTGNAEAAQ 355

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +  +  KG   ++  +   I+     G++K+A     D+  A + P   T+  L+ G 
Sbjct: 356 VKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGY 415

Query: 571 KKLYN----RQIAAEITEK 585
            +L +    R++  E+TE+
Sbjct: 416 CRLGDLEGARRLKEEMTEE 434



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 1/179 (0%)

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +C+    EM + G  P V   N V+R+        +   V+++M    + P   ++  ++
Sbjct: 177 QCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLL 236

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
             F   G + +A    K+M  R     P   T   ++N L R  ++E A  +   I+   
Sbjct: 237 DSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVD-IMRLS 295

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
            + + + +   I  L +   V++A +  L+M +  ++P   T+  L+ GL K  N + A
Sbjct: 296 KKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAA 354


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 218/444 (49%), Gaps = 15/444 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y  L+++L   R       L+  MR    +  ++T   +  L+R    A 
Sbjct: 112 RPNAVS----YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVT---YGTLIRGLCDAA 164

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V KA+E++ EM + G EP+  V+  LL   CK+   ++  K+F EM E+  +P +  +T
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+   CK GK  +A  V+  M   G EP++V YN L++   + G + +A  +LK+M  K
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKID 365
           G  P+  +Y  LI+ L  + +M+EA     EM R     + +VVT+ ++I G C   ++ 
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMR 344

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           + +++   M + G + N +TY  ++    +  ++ + +ELM EM  +G  PD   Y+++I
Sbjct: 345 QAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILI 404

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +  CK+ ++  A ++ + M    + P    ++ ++     QG +  A   F EM     L
Sbjct: 405 KGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPL 464

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
               Y T   +++   +A  ++ AK++   IV +G   +   ++I I+    +G ++ A 
Sbjct: 465 DVVAYST---MIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAAN 521

Query: 546 SYCLDMMDADVMPQPDTFAKLMRG 569
                M  +  +P    F  L++G
Sbjct: 522 GVLKQMTASGFLPDVAVFDSLIQG 545



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 195/399 (48%), Gaps = 15/399 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V    VY +L++   K  ++  V  +  EM ++  +P ++   ++  L+       
Sbjct: 182 EPNVV----VYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVV---MYTGLIDSLCKVG 234

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             KKA  V+D M + G EP+   +  L++ +CK  SVKEA  +  +M E+   P +  + 
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYN 294

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAG--FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +L+ G     ++ EA ++L +M       +P++V +N+++ G   +G+M  AF++   M 
Sbjct: 295 TLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMME 354

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC  N  +Y +LI  L R+ K+ +A     EM   G E D  TY+ LI GFCK  ++D
Sbjct: 355 ETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVD 414

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           R  ++L +M  RGI P    Y+ +++A  ++  +E    L  EM       DV  Y+ +I
Sbjct: 415 RAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMI 473

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             ACK G+LK A  +   +    L+P   ++ ++++ F   G +  A    K+M   G L
Sbjct: 474 HGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFL 533

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             P      +L+       ++    ++   ++TK   L+
Sbjct: 534 --PDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALD 570



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR----HFT 247
           +A  +LD +P      D   +  +L ALC+      A  L   M     P+ R     +T
Sbjct: 63  EATSLLDALPSV---RDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYT 119

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+   C +    +A  +L  M+ AG   D+V Y  L+ G     ++  A EL+ EM   
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCES 179

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G +PN   Y+ L+Q  C+  + E+  + FVEM   G E DVV YT LI   CK  K  + 
Sbjct: 180 GIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + ++D M++RG+ PN +TY  ++    K+  ++E + ++ +M + G  PDV  YN +I+ 
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 428 ACKLGELKEAVNVWNEMEAAS--LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              + E+ EA+ +  EM      + P   +F  ++ G    G + +A +    M   G +
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCM 359

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
                 T   L+  LLR  KV  A ++   + + G E + + ++I I        V  A 
Sbjct: 360 V--NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAE 417

Query: 546 SYCLDMMDADVMPQ 559
                M D  + P+
Sbjct: 418 DLLSTMRDRGIEPE 431



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 171/375 (45%), Gaps = 11/375 (2%)

Query: 227 EAAKLFDEMRERFKPSLR---HFTSLLYGWCKEGKLVEAKYVLVQMK---DAGFEPDIVV 280
           EA  L D +     PS+R    + ++L   C+ G    A  +L  M         P+ V 
Sbjct: 63  EATSLLDAL-----PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y  L+           A  LL+ MR  G   +  +Y  LI+ LC   ++++A     EM 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            SG E +VV Y++L+ G+CKS + +   ++   M ++GI P+ + Y  ++ +  K  + +
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +   +M  M + G  P+V  YNV+I   CK G +KEA+ V  +M    ++P   ++  ++
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G      + EA    +EMV    +  P   T  +++  L    ++  A  V + +   G
Sbjct: 298 KGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETG 357

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C +N+  + + I  L     V++A     +M    + P   T++ L++G  K++    A 
Sbjct: 358 CMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAE 417

Query: 581 EITEKVRKMAAERQI 595
           ++   +R    E ++
Sbjct: 418 DLLSTMRDRGIEPEL 432



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 5/225 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L ++ K      LM+EM     +P   T   + IL++ F     V +A ++L 
Sbjct: 365 YNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFT---YSILIKGFCKMWQVDRAEDLLS 421

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            M   G EP+ F +  LL A+C+   ++ A  LF+EM   F   +  ++++++G CK G 
Sbjct: 422 TMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGD 481

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L  AK +L  + D G  PD V Y+ +++ +A+ G M  A  +LK+M   G  P+   +  
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDS 541

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           LIQ      ++ +      EM       D    +TL +    S +
Sbjct: 542 LIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNE 586


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 204/425 (48%), Gaps = 12/425 (2%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + H ++ +  +I  L  + +F     ++E M++EK  ++T ++F+ + R +        A
Sbjct: 46  FRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKC-MVTEDIFLSICRGYGRVHRPLDA 104

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRHFTSLLYG 252
           I V  +M  +   P +  +  +LD L + + VK A   + EMRE   PS +     L+  
Sbjct: 105 IRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKA 164

Query: 253 WCKEGKLVEAKYVLVQ-MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            CK  + V++   + Q M + G +PD   Y  L++G  ++G +++A EL KEM +KG   
Sbjct: 165 LCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSA 224

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT LI  LC+   ++EA     EM+R+  E +V TY++L+ G CK     +  ++L
Sbjct: 225 SVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLL 284

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + M ++  LPN +TY  ++    K+ +L E VE++  MR  G  P+   Y  +I   C  
Sbjct: 285 EVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAA 344

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMV--HGFLGQGCL-----IEACEYFKEMVGRGL 484
           G  +EA N  +EM    +SP   S+ + V  H  + QG         A + +  M  R +
Sbjct: 345 GSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCI 404

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             + +  T   L+    +   +  A  +   +V  GC  +   W + I  L+    V+EA
Sbjct: 405 --SVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREA 462

Query: 545 CSYCL 549
               L
Sbjct: 463 TEQLL 467



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 111/262 (42%), Gaps = 44/262 (16%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           +Q  +  S   Y +LI  L +         L+EEM++                       
Sbjct: 218 EQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRND--------------------- 256

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTS 248
                           EP+ F +  L+D LCK     +A +L + M ++   P++  +++
Sbjct: 257 ---------------IEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYST 301

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G CKE KL EA  +L +M+  G +P+  +Y  ++SG    G   +A   + EM   G
Sbjct: 302 LINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGG 361

Query: 309 CDPNANSYTV-------LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             PN  S+++       ++Q LC       A + ++ M       ++ T+  L+  FCK 
Sbjct: 362 ISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKR 421

Query: 362 RKIDRCYEILDSMIQRGILPNQ 383
             + +   IL+ M+  G +P++
Sbjct: 422 GDLHKAARILEEMVLDGCIPDE 443



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 132/316 (41%), Gaps = 5/316 (1%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           GF  D   +  ++S    + +   A  +L+ M+++ C    + +  + +   R+ +  +A
Sbjct: 45  GFRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDA 104

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            R F +ME          Y T++    +   + R       M + GI P+ +  L+I++ 
Sbjct: 105 IRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGI-PSSVVSLNILIK 163

Query: 393 H--EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
              + KE ++  + +  EM   GC PD   Y  +I   C+LG + EA  ++ EME    S
Sbjct: 164 ALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFS 223

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
               ++  ++HG      L EA    +EM    +   P   T  +L++ L +      A 
Sbjct: 224 ASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDI--EPNVFTYSSLMDGLCKGGHSSQAM 281

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +   +  K    N+  ++  I+ L     ++EA      M    + P    + K++ GL
Sbjct: 282 QLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGL 341

Query: 571 KKLYNRQIAAEITEKV 586
               + Q AA   +++
Sbjct: 342 CAAGSYQEAANFIDEM 357



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 125/275 (45%), Gaps = 5/275 (1%)

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++ ++I  L  + +   A      M++  C      + ++  G+ +  +      +   M
Sbjct: 52  TFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKM 111

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE- 433
               + P Q  YL I+    ++  ++  +    EMR++G    V + N++I+  CK  E 
Sbjct: 112 EGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKET 171

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A+ ++ EM      P + ++  +++G    G + EA E FKEM  +G   +    T 
Sbjct: 172 VDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGF--SASVVTY 229

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            +L++ L ++  ++ A  +   +     E NV+ ++  +  L   GH  +A    L++MD
Sbjct: 230 TSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQL-LEVMD 288

Query: 554 -ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
               +P   T++ L+ GL K    + A EI +++R
Sbjct: 289 KKHHLPNMVTYSTLINGLCKERKLREAVEILDRMR 323


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 210/435 (48%), Gaps = 34/435 (7%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           E+  ++      +++R F     V +A+       + G  P+   F C+++ LCK  SVK
Sbjct: 230 ERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVK 289

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNL 284
           +A ++ +EM  R +KP++   T+L+ G CK+G   +A  + +++ +    +P+++ Y  +
Sbjct: 290 QAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAM 349

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +SGY +  KM  A  LL  M+ +G  PN N+YT LI   C+    E A      M   G 
Sbjct: 350 ISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGF 409

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             +V TY  ++ G CK  ++   Y++L S  + G+  +++TY  ++  H K+ E+++ + 
Sbjct: 410 SPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALV 469

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  +M K G  PD+ +Y  +I + C+   +KE+   + E     L P   ++  M+ G+ 
Sbjct: 470 LFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYC 529

Query: 465 GQGCLIEACEYFKEMVGRGLLS-APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--- 520
            +G L  A ++F  M   G  S +  YG   AL++ L +  K++ A+ ++  ++ KG   
Sbjct: 530 REGNLRLALKFFHRMSDHGCASDSITYG---ALISGLCKQSKLDEARCLYDAMIEKGLTP 586

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           CE+                 V  A  YC          + D     M  L++L  +    
Sbjct: 587 CEVT---------------RVTLAYEYC----------KIDDGCSAMVVLERLEKKLWVR 621

Query: 581 EITEKVRKMAAERQI 595
            +   VRK+ +ER++
Sbjct: 622 TVNTLVRKLCSERKV 636



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 229/528 (43%), Gaps = 59/528 (11%)

Query: 85  HSRL--PKLELALQHSGVVLRPGLTERVINRCGDAGNL-GYRYYMWASKQPNYVHSYDVY 141
           H+R   P L L +  + +     +T  V +   DAG++    ++ WA     + H   +Y
Sbjct: 57  HARFSPPTLHLDVDPNSLTHDQAVT-IVASLASDAGSMVALSFFNWAIASSKFRHFTRLY 115

Query: 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
            A   SL   + F            EK      EV   +++ FA    VK+AIE++ EM 
Sbjct: 116 IACAASLISNKNF------------EKAH----EVMQCMVKSFAEIGRVKEAIEMVIEMH 159

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
             G  P       ++  + +   V+ A  LFDEM  R  +P+   +  ++ G+CK G ++
Sbjct: 160 NQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVL 219

Query: 261 EAKYVLVQMKDAGF-----------------------------------EPDIVVYNNLL 285
           E+   L  M + GF                                    P+++ +  ++
Sbjct: 220 ESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMI 279

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS-GC 344
            G  + G +  AFE+L+EM  +G  PN  ++T LI  LC+    E+A R F+++ RS   
Sbjct: 280 EGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENH 339

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           + +V+TYT +ISG+C+  K++R   +L  M ++G+ PN  TY  ++  H K    E   E
Sbjct: 340 KPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYE 399

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           LM  M + G  P+V  YN ++   CK G ++EA  V        L     ++ +++    
Sbjct: 400 LMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHC 459

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            Q  + +A   F +MV  G+   P   +   L+    R ++++ ++  +   V  G    
Sbjct: 460 KQAEIKQALVLFNKMVKSGI--QPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPT 517

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +T  I      G+++ A  +   M D        T+  L+ GL K
Sbjct: 518 NKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCK 565


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 185/373 (49%), Gaps = 8/373 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G     ++ +RK   +L+   V  +  ++      ++V  A E+  
Sbjct: 176 YGTLINGLCKI---GETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYS 232

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M      PD   F  L+   C    ++EA  LF EM  +   P    F  L+   CKEG
Sbjct: 233 QMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEG 292

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  AK +LV M   G  P++V Y++L+ GY  + ++  A  +L  + + G  PNA+SY 
Sbjct: 293 NLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYC 352

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I   C+++ ++EA   F +M+  G   D VTY +LI G CKS +I   +E++D M   
Sbjct: 353 TMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDN 412

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G   N  TY  ++ A  K   +++ + L+ +++  G  PD+  +N++I   CK+G LK A
Sbjct: 413 GQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNA 472

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +V+ ++ +   S    ++ +MV+G   +G   EA     +M   G++  P   T + L+
Sbjct: 473 QDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGII--PDAVTYETLI 530

Query: 498 NSLLRAQKVEMAK 510
            +L    + E A+
Sbjct: 531 QALFHKDENEKAE 543



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 233/478 (48%), Gaps = 12/478 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI     M +    +++M ++ K   +P  IT   F  L++       VK+A+   D
Sbjct: 106 FNILINCYCHMAEMNFAFSMMAKILKMGYEPDTIT---FNTLIKGLCLNGKVKEALHFHD 162

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
            +   G   D+F +G L++ LCK    + A ++  ++  +  K ++  + +++   CK  
Sbjct: 163 HVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHK 222

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +++A  +  QM      PD+V ++ L+ G+  +G++ +AF L +EM  K  +P+  ++ 
Sbjct: 223 LVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFN 282

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+ ALC+   ++ A    V M + G   +VVTY++L+ G+C   ++++   +L+++ Q 
Sbjct: 283 ILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQM 342

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  +Y  ++    K + ++E + L  +M+  G  PD   YN +I   CK G +  A
Sbjct: 343 GAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYA 402

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + +EM          ++  ++        + +A    K++  +G+   P   T   L+
Sbjct: 403 WELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGI--QPDMYTFNILI 460

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             L +  +++ A+DV+  +++KG  +N + + I ++ L   G   EA +    M D  ++
Sbjct: 461 YGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGII 520

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
           P   T+  L++    L+++    +  + +R+M A R + + +        L+ +AK Q
Sbjct: 521 PDAVTYETLIQA---LFHKDENEKAEKLLREMIA-RDVVYALEGLEMVLHLESEAKDQ 574



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 214/462 (46%), Gaps = 12/462 (2%)

Query: 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKF-------GAVWALMEEMRKEKPQLIT 173
           G+R+   +S   +Y+ S+ ++  LI  L    +F         V +    + + KP    
Sbjct: 8   GFRFSSTSSSSSSYIPSF-LFPFLITRLYSQFQFVPSNIDVDNVVSSFNHLLRTKPTSSI 66

Query: 174 TEVFVILMRRFASAR-MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
            E   IL     S       AI +   +  +G  PD F F  L++  C  + +  A  + 
Sbjct: 67  IEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMM 126

Query: 233 DE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            + ++  ++P    F +L+ G C  GK+ EA +    +   GF  D   Y  L++G  ++
Sbjct: 127 AKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKI 186

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G+   A ++L+++  K    N   Y  +I +LC+ + + +A   + +M       DVVT+
Sbjct: 187 GETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTF 246

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           + LI GFC   +++  + +   M+ + I P+  T+  ++ A  K+  L+    ++  M K
Sbjct: 247 SALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMK 306

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G +P+V  Y+ ++   C + ++ +A +V N +     +P   S+  M++GF     + E
Sbjct: 307 EGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDE 366

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   F +M  +G+  AP   T  +L++ L ++ ++  A ++   +   G   N++ +   
Sbjct: 367 ALSLFNDMQFKGI--APDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCL 424

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           I +L  N HV +A +    + D  + P   TF  L+ GL K+
Sbjct: 425 IDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKV 466



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 171/351 (48%), Gaps = 6/351 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I SL K +     + L  +M  +K  P ++T   F  L+  F     +++A  + 
Sbjct: 210 MYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVT---FSALIYGFCIVGQLEEAFGLF 266

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK-LFDEMRERFKPSLRHFTSLLYGWCKE 256
            EM      PD + F  L+DALCK  ++K A   L   M+E   P++  ++SL+ G+C  
Sbjct: 267 REMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLV 326

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +AK+VL  +   G  P+   Y  +++G+ ++  + +A  L  +M+ KG  P+  +Y
Sbjct: 327 NQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTY 386

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI  LC+  ++  A     EM  +G  A++ TY  LI   CK+  +D+   ++  +  
Sbjct: 387 NSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKD 446

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +GI P+  T+  ++    K   L+   ++  ++   G   +   YN+++   CK G   E
Sbjct: 447 QGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDE 506

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
           A  + ++M+   + P   ++  ++     +    +A +  +EM+ R ++ A
Sbjct: 507 AEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDVVYA 557



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 135/275 (49%), Gaps = 6/275 (2%)

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIE 195
           Y  +  L+ +L K         ++  M KE   P ++T   +  LM  +     V KA  
Sbjct: 278 YYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVT---YSSLMDGYCLVNQVNKAKH 334

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWC 254
           VL+ + + G  P+   +  +++  CK   V EA  LF++M+ +   P    + SL+ G C
Sbjct: 335 VLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLC 394

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K G++  A  ++ +M D G   +I  YN L+    +   +  A  L+K+++ +G  P+  
Sbjct: 395 KSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMY 454

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++ +LI  LC++ +++ A   F ++   G   +  TY  +++G CK    D    +L  M
Sbjct: 455 TFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKM 514

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
              GI+P+ +TY  ++ A   K+E E+  +L+ EM
Sbjct: 515 DDNGIIPDAVTYETLIQALFHKDENEKAEKLLREM 549


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 162/319 (50%), Gaps = 3/319 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+E+   + + G   +      L+  LCK  +++EA +L  +M ER F      + +L+ 
Sbjct: 542 AVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLIS 601

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CKEGK+ E   +  +M   G EPD   YN L+ G  ++GK+ +A  L  E + +   P
Sbjct: 602 GCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVP 661

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  +Y V+I   C+ +K+EE  + F E+     E + V Y TLI  +C++      +++ 
Sbjct: 662 NVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLH 721

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D M  +GI P   TY  ++        +E+   L+ EMRK G +P+V  Y  +I   CKL
Sbjct: 722 DDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKL 781

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G++ + VNV  EM +  + P   ++ VM+ G+   G +  A +   EMVG+G++  P   
Sbjct: 782 GQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIV--PDTV 839

Query: 492 TLKALLNSLLRAQKVEMAK 510
           T   L N   +  K+E  K
Sbjct: 840 TYNVLTNGFCKEGKIEEGK 858



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 209/461 (45%), Gaps = 47/461 (10%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V     Y  LI  L K       +   E+M K+     LIT   + +L+       
Sbjct: 345 SPNVV----TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLIT---YSVLINGLMKLE 397

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
              +A  VL E  + G  P+E V+  L+D  CK  ++ +A ++  +M  +   P+     
Sbjct: 398 KFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLN 457

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++ G+CK G++ +A+ +L +M   GF  +   +  ++       +   A   L+EM  +
Sbjct: 458 SIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLR 517

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN    T L+  LC+  K  +A   +  +   G  A++VT   LI G CK+  +   
Sbjct: 518 NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEA 577

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +L  M++RG + +++TY  ++    K+ ++EE  +L GEM K G  PD   YN++I  
Sbjct: 578 VRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 637

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++G+L EAVN+WNE ++  L P   ++ VM+ G+                        
Sbjct: 638 MCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY------------------------ 673

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
                         +A K+E  + +++ ++T+  ELN   +   I +   NG+  EA   
Sbjct: 674 -------------CKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 720

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             DM    + P   T++ L+ G+  +   + A  + +++RK
Sbjct: 721 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRK 761



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 37/379 (9%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
           + AI V   +   G  P       LL +L K + ++++  +F+ MR+   P +  F++ +
Sbjct: 261 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAI 320

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
             +CK GK+ +A  +   M+  G  P++V YNNL+ G  + G + +AF   ++M + G +
Sbjct: 321 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 380

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
               +Y+VLI  L ++EK  EAN    E    G   + V Y TLI G+CK   +     I
Sbjct: 381 ATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRI 440

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M+ +GI PN +T                                    N +I+  CK
Sbjct: 441 RGDMVSKGINPNSVT-----------------------------------LNSIIQGFCK 465

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G++++A  +  EM +   S    +F  ++H          A  + +EM+ R +   P  
Sbjct: 466 IGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNM--RPND 523

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
           G L  L+  L +  K   A ++W  ++ KG   N+      IH L   G+++EA      
Sbjct: 524 GLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKK 583

Query: 551 MMDADVMPQPDTFAKLMRG 569
           M++   +    T+  L+ G
Sbjct: 584 MLERGFVLDKITYNTLISG 602



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 142/304 (46%), Gaps = 39/304 (12%)

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            L+TT     L+        +++A+ +L +M + G   D+  +  L+   CK   V+E  
Sbjct: 557 NLVTTNA---LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGF 613

Query: 230 KLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI---------- 278
           KL  EM ++  +P    +  L++G C+ GKL EA  +  + K     P++          
Sbjct: 614 KLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY 673

Query: 279 -------------------------VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
                                    VVYN L+  Y + G   +AF+L  +MR KG  P  
Sbjct: 674 CKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTT 733

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y+ LI  +C + +ME+A     EM + G   +VV YT LI G+CK  ++D+   +L  
Sbjct: 734 ATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQE 793

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M    I PN++TY  ++  + K  +++   +L+ EM   G VPD   YNV+    CK G+
Sbjct: 794 MSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGK 853

Query: 434 LKEA 437
           ++E 
Sbjct: 854 IEEG 857



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A   F+ +  +G+   P   T   LL+SL++A ++E +  V+  +  +G   +VY ++  
Sbjct: 263 AIGVFRFLANKGVF--PTVKTCTFLLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTA 319

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           I++    G V++A     DM    V P   T+  L+ GL K  N   A    EK+ K
Sbjct: 320 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK 376


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 204/429 (47%), Gaps = 8/429 (1%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T   F  L+    +   V +A    D +   G + + + +G +++ LCK      A    
Sbjct: 140 TVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYL 199

Query: 233 DEMRERF--KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           ++++ R      +  +++++   CK+G + EA  +   M   G +PD+V YN+L+ G   
Sbjct: 200 EKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCN 259

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            G+  +A  LL  M RKG  PN  ++ VL+   C+   +  A      M   G E DVVT
Sbjct: 260 FGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVT 319

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y ++ISG C   ++    ++ + MI +G LPN +TY  ++    K + + + + L+GEM 
Sbjct: 320 YNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMV 379

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             G  PDV  ++ +I   CK G+ + A  ++  M      P   +  +++ G        
Sbjct: 380 NSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHS 439

Query: 471 EACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
           EA   F+EM    L L+   Y     +L+ +    K+  A++++SC+ +KG +++V A+T
Sbjct: 440 EAISLFREMEKMNLELNVVIY---NIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYT 496

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN--RQIAAEITEKVR 587
             I  L   G + +A +  + M +   +P   T+   +RGL + Y+  R     +  K +
Sbjct: 497 TMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGK 556

Query: 588 KMAAERQIT 596
            ++A+   T
Sbjct: 557 GLSADATTT 565



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 186/390 (47%), Gaps = 5/390 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y A+I  L K          +E+++     L     +  +M       MV +A+ +   M
Sbjct: 179 YGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGM 238

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKL 259
              G +PD   +  L+  LC     KEA  L  + MR+   P+++ F  L+  +CK+G +
Sbjct: 239 TSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMI 298

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             AK ++  M   G EPD+V YN+++SG+  + +M DA ++ + M  KG  PN  +Y+ L
Sbjct: 299 SRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSL 358

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+ + + +A     EM  SG   DVVT++TLI GFCK+ K +   E+  +M +   
Sbjct: 359 IHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQ 418

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  T   I+    K +   E + L  EM K+    +V  YN+V+   C  G+L +A  
Sbjct: 419 HPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQE 478

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +++ + +  +     ++  M+ G   +G L +A     +M   G L  P   T    +  
Sbjct: 479 LFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCL--PNEFTYNVFVRG 536

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
           LL  Q+ ++++     ++ KG  L+  A T
Sbjct: 537 LL--QRYDISRSTKYLLLMKGKGLSADATT 564



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y +LI  L    ++     L+  M + K  +   + F +L+  F    M+
Sbjct: 244 QPDLV----AYNSLIHGLCNFGRWKEATTLLGNMMR-KGIMPNVQTFNVLVDNFCKDGMI 298

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A  ++  M   G EPD   +  ++   C  S + +A K+F+ M  + F P+L  ++SL
Sbjct: 299 SRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSL 358

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++GWCK   + +A ++L +M ++G  PD+V ++ L+ G+ + GK   A EL   M     
Sbjct: 359 IHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQ 418

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +  +++  L + +   EA   F EME+   E +VV Y  ++ G C   K++   E
Sbjct: 419 HPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQE 478

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
           +   +  +GI  + + Y  ++    K+  L++   L+ +M + GC+P+   YNV +R
Sbjct: 479 LFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVR 535



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 7/360 (1%)

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KP +   T ++   C     V    VL  M   G +P +V +  L++G    G +  A  
Sbjct: 103 KPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAAR 162

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV-TYTTLISGF 358
               +   G   N+ +Y  +I  LC+      A     +++   C+ DVV  Y+T++   
Sbjct: 163 FADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSL 222

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   +     +   M  +GI P+ + Y  ++         +E   L+G M + G +P+V
Sbjct: 223 CKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNV 282

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF--VVMVHGFLGQGCLIEACEYF 476
             +NV++   CK G +  A  +   M    + P   ++  V+  H  L Q  + +A + F
Sbjct: 283 QTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQ--MGDAVKVF 340

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           + M+ +G L  P   T  +L++   + + +  A  +   +V  G   +V  W+  I    
Sbjct: 341 ELMIHKGFL--PNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFC 398

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
             G  + A      M + D  P   T A ++ GL K      A  +  ++ KM  E  + 
Sbjct: 399 KAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVV 458



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 139/343 (40%), Gaps = 3/343 (0%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P  + FT L     K         ++  +   G +PD+     +++    +      F +
Sbjct: 69  PREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSV 128

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L  M + G DP   ++  LI  LC    +  A R    +E  G +++  TY  +I+G CK
Sbjct: 129 LGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCK 188

Query: 361 SRKIDRCYEILDSMIQRGI-LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           +         L+ +  R   L   + Y  IM +  K   + E + L   M   G  PD+ 
Sbjct: 189 AGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLV 248

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN +I   C  G  KEA  +   M    + P   +F V+V  F   G +  A      M
Sbjct: 249 AYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFM 308

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V  G+   P   T  ++++      ++  A  V+  ++ KG   N+  ++  IH      
Sbjct: 309 VHVGV--EPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTK 366

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           ++ +A     +M+++ + P   T++ L+ G  K    + A E+
Sbjct: 367 NINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKEL 409



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 10/235 (4%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y +LI    K +       L+ EM      P ++T   +  L+  F  A  
Sbjct: 350 PNLV----TYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVT---WSTLIGGFCKAGK 402

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
            + A E+   M ++   P+      +LD L K     EA  LF EM +   + ++  +  
Sbjct: 403 PEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNI 462

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           +L G C  GKL +A+ +   +   G + D+V Y  ++ G  + G + DA  LL +M   G
Sbjct: 463 VLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENG 522

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           C PN  +Y V ++ L +   +  + +  + M+  G  AD  T   LIS F  +++
Sbjct: 523 CLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLISYFSANKE 577



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 3/198 (1%)

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+    LP +  +  +     K +     + L+  +  +G  PDV    ++I   C L  
Sbjct: 62  MVVMNPLPREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNH 121

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
                +V   M    + P   +F  +++G   +G +  A  +   +   G  S     T 
Sbjct: 122 TVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSY--TY 179

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMM 552
            A++N L +A     A      I  + C+L+ V A++  + SL  +G V EA +    M 
Sbjct: 180 GAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMT 239

Query: 553 DADVMPQPDTFAKLMRGL 570
              + P    +  L+ GL
Sbjct: 240 SKGIQPDLVAYNSLIHGL 257


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 195/406 (48%), Gaps = 3/406 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  +I  + K     A   L EEM K +  +  T  +  ++  F     +   +   +E
Sbjct: 132 TYNIMIDCMCKEGDVEAARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEE 190

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M    CEPD   +  L++  CK   +    + + EM+    KP++  +++L+  +CKEG 
Sbjct: 191 MKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 250

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A    V M+  G  P+   Y +L+    ++G ++DAF L  EM + G + N  +YT 
Sbjct: 251 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 310

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC  E+M+EA   F +M+ +G   ++ +Y  LI GF K++ +DR  E+L+ +  RG
Sbjct: 311 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 370

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P+ L Y   +      E++E    +M EM++ G   +   Y  ++    K G   E +
Sbjct: 371 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 430

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           ++ +EM+   +     +F V++ G      + +A +YF  +     L A       A+++
Sbjct: 431 HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQA-NAAIFTAMID 489

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            L +  +VE A  ++  +V KG   +  A+T  +   F  G+V EA
Sbjct: 490 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 535



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 194/401 (48%), Gaps = 9/401 (2%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF  L        M+++AI+   +M ++   P       LL    K     +  + F +M
Sbjct: 62  VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 121

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                +P++  +  ++   CKEG +  A+ +  +MK  G  PD V YN+++ G+ ++G++
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 181

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            D     +EM+   C+P+  +Y  LI   C+  K+      + EM+ +G + +VV+Y+TL
Sbjct: 182 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTL 241

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           +  FCK   + +  +    M + G++PN+ TY  ++ A+ K   L +   L  EM ++G 
Sbjct: 242 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 301

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             +V  Y  +I   C    +KEA  ++ +M+ A + P   S+  ++HGF+    +  A E
Sbjct: 302 EWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALE 361

Query: 475 YFKEMVGRGLLSAPQ---YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
              E+ GRG+   P    YGT    L SL   +K+E AK V + +   G + N   +T  
Sbjct: 362 LLNELKGRGI--KPDLLLYGTFIWGLCSL---EKIEAAKVVMNEMKECGIKANSLIYTTL 416

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + + F +G+  E      +M + D+     TF  L+ GL K
Sbjct: 417 MDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 191/424 (45%), Gaps = 9/424 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ++I    K+ +        EEM+    +P +IT    +    +F    +    +E  
Sbjct: 167 TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI---GLEFY 223

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
            EM   G +P+   +  L+DA CK   +++A K + +MR     P+   +TSL+   CK 
Sbjct: 224 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 283

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G L +A  +  +M   G E ++V Y  L+ G     +M +A EL  +M   G  PN  SY
Sbjct: 284 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASY 343

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI    + + M+ A     E++  G + D++ Y T I G C   KI+    +++ M +
Sbjct: 344 NALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKE 403

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI  N L Y  +M A+ K     E + L+ EM+++     V  + V+I   CK   + +
Sbjct: 404 CGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSK 463

Query: 437 AVNVWNEMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           AV+ +N +     L      F  M+ G      +  A   F++MV +GL+  P      +
Sbjct: 464 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV--PDRTAYTS 521

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L++   +   V  A  +   +   G +L++ A+T  +  L     +++A S+  +M+   
Sbjct: 522 LMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 581

Query: 556 VMPQ 559
           + P 
Sbjct: 582 IHPD 585



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 166/356 (46%), Gaps = 3/356 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y +LI +  K+      + L  EM +   +      +  L+     A  +K+A E+  +
Sbjct: 272 TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW-NVVTYTALIDGLCDAERMKEAEELFGK 330

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G  P+   +  L+    K  ++  A +L +E++ R  KP L  + + ++G C   K
Sbjct: 331 MDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEK 390

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +  AK V+ +MK+ G + + ++Y  L+  Y + G  T+   LL EM+    +    ++ V
Sbjct: 391 IEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCV 450

Query: 319 LIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           LI  LC+ + + +A   F  +    G +A+   +T +I G CK  +++    + + M+Q+
Sbjct: 451 LIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 510

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G++P++  Y  +M  + K+  + E + L  +M +IG   D+  Y  ++       +L++A
Sbjct: 511 GLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 570

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            +   EM    + P     + ++      GC+ EA E    ++   LL++     L
Sbjct: 571 RSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSDNDNAL 626



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 2/312 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P   V++ L S    +G + +A +   +M+R    P   S   L+    ++ K ++  R 
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F +M  +G    V TY  +I   CK   ++    + + M  RG++P+ +TY  ++    K
Sbjct: 118 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 177

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              L++ V    EM+ + C PDV  YN +I   CK G+L   +  + EM+   L P   S
Sbjct: 178 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 237

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +V  F  +G + +A +++ +M   GL+  P   T  +L+++  +   +  A  + + 
Sbjct: 238 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLV--PNEYTYTSLIDANCKIGNLSDAFRLGNE 295

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           ++  G E NV  +T  I  L     +KEA      M  A V+P   ++  L+ G  K  N
Sbjct: 296 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 355

Query: 576 RQIAAEITEKVR 587
              A E+  +++
Sbjct: 356 MDRALELLNELK 367



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 119/301 (39%), Gaps = 38/301 (12%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D F++L   R   C P    +  L   L  +  +EEA + F +M+R        +   L+
Sbjct: 44  DVFDVLWSTRNV-CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLL 102

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
             F K  K D        MI  G  P   T                              
Sbjct: 103 HRFAKLGKTDDVKRFFKDMIGAGARPTVFT------------------------------ 132

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
                YN++I   CK G+++ A  ++ EM+   L P T ++  M+ GF   G L +   +
Sbjct: 133 -----YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCF 187

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F+EM  + +   P   T  AL+N   +  K+ +  + +  +   G + NV +++  + + 
Sbjct: 188 FEEM--KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 245

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
              G +++A  + +DM    ++P   T+  L+    K+ N   A  +  ++ ++  E  +
Sbjct: 246 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 305

Query: 596 T 596
            
Sbjct: 306 V 306


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 222/456 (48%), Gaps = 31/456 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI S  K+       +  +EM      P ++T   +  L+  +   + V +A ++  
Sbjct: 493 YTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVT---YTALLHAYLKTKQVPQASDIFH 549

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-----------------RERFKP 241
            M   GC P+   +  L+D LCK    ++A +++ +M                  +   P
Sbjct: 550 RMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAP 609

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++  + +L+ G CK  K+V+A+ +L  M   G EP+ ++Y+ L+ G+ ++GK+ +A E+ 
Sbjct: 610 NVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVF 669

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M + G  P  ++YT LI A+ +  +++ A +   +M  S C  +VVTYT +I G C+ 
Sbjct: 670 FRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRI 729

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            +  +  ++L  M +RG  PN +TY  ++    K  +++  ++L  +M   GC P+   Y
Sbjct: 730 GECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTY 789

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
            V+I   C  G L EA ++ +EM+          +  +V GF  +   I +    +E+  
Sbjct: 790 RVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKK--FIASLGLLEELES 847

Query: 482 RGLLS-APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA---WTIWIHSLFS 537
            G++S AP YG    L++S  +A ++E A ++   ++     LN+ +   +T  I +L  
Sbjct: 848 HGMVSIAPVYGL---LIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCL 904

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
              +++A     ++    V+P+   F  L++GL K+
Sbjct: 905 ASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKV 940



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 194/423 (45%), Gaps = 55/423 (13%)

Query: 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
           + L  M KF   + +++ M + K  +  T  +  ++     A  V+KA  +  EM   G 
Sbjct: 428 RCLCGMGKFDKAFQIIKLMMR-KGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 486

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKY 264
            PD + +  L+D+ CK   +++A   FDEM      PS+  +T+LL+ + K  ++ +A  
Sbjct: 487 IPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASD 546

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM----RRKGCD---------- 310
           +  +M DAG  P+ + Y+ L+ G  + G+   A E+  +M       G D          
Sbjct: 547 IFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDS 606

Query: 311 --PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  +Y  LI  LC+  K+ +A      M  +GCE + + Y  LI GFCK  K+D   
Sbjct: 607 IAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQ 666

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+   M + G LP   TY  ++ A  K   L+  ++++ +M +  C P+V  Y  +I   
Sbjct: 667 EVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGL 726

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C++GE ++A+ + + ME                    +GC                   P
Sbjct: 727 CRIGECQKALKLLSMMEK-------------------RGC------------------NP 749

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  +L++ L ++ KV+M+  +++ ++T+GC  N   + + I+   + G + EA S  
Sbjct: 750 NVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLL 809

Query: 549 LDM 551
            +M
Sbjct: 810 SEM 812



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 205/471 (43%), Gaps = 81/471 (17%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLS----------KMRKFG-------------- 155
           L  R+++WA +Q  Y H+   Y AL + L            +R+ G              
Sbjct: 119 LCVRFFLWAERQVGYSHTGACYNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVI 178

Query: 156 -------AVWA-LMEEMRKEK-----PQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
                    WA  +EE+ + K     P   T   +  L++  A+A  +     V  EM +
Sbjct: 179 VRKCCRHGAWAKALEELGRLKDFGYRPSGAT---YNALVQVLATAGQMDMGFRVQKEMSE 235

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEA-------------------------AKLFDE--- 234
            G   D+F  GC   ALCK     +A                         A LFDE   
Sbjct: 236 LGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAIS 295

Query: 235 ----MR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
               MR     P++  + +LL G+ K+ +L   K ++  M + G  P+  ++N+L+  Y 
Sbjct: 296 FLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYC 355

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE------ANRAFVEMERSG 343
                  A++LL  M   GC P    Y + I ++C  E++        A + + EM  S 
Sbjct: 356 NARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASS 415

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C  + V         C   K D+ ++I+  M+++G +P+  TY  ++    +  ++E+  
Sbjct: 416 CVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAF 475

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L  EM+ +G +PDV  Y ++I   CK+G +++A + ++EME+   SP   ++  ++H +
Sbjct: 476 LLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAY 535

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           L    + +A + F  MV  G   AP   T  AL++ L +A + + A +V++
Sbjct: 536 LKTKQVPQASDIFHRMVDAG--CAPNTITYSALVDGLCKAGESQKACEVYA 584



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 207/477 (43%), Gaps = 59/477 (12%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFG----AVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           PN V     YR L+    K ++ G     +  +M E     P L  +     L+  + +A
Sbjct: 307 PNVV----TYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNS-----LVHSYCNA 357

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
           R    A ++L+ M   GC P   V+   + ++C                E   P L    
Sbjct: 358 RDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSG-------------EELPSPDLLALA 404

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
             +Y      +++ +  VL ++  A F          L G   MGK   AF+++K M RK
Sbjct: 405 EKVYE-----EMLASSCVLNKVNTANFA-------RCLCG---MGKFDKAFQIIKLMMRK 449

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+ ++Y+ +I  LC   K+E+A   F EM+  G   DV TYT LI  FCK   I++ 
Sbjct: 450 GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQA 509

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
               D M   G  P+ +TY  ++ A+ K +++ +  ++   M   GC P+   Y+ ++  
Sbjct: 510 RSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDG 569

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFV-----------VMVHGFLGQGC-----LIE 471
            CK GE ++A  V+ +M   S + G+D +            V+ +G L  G      +++
Sbjct: 570 LCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVD 629

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A E    M   G    P +    AL++   +  K++ A++V+  +   G    V+ +T  
Sbjct: 630 AQELLDVMSSNG--CEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSL 687

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           I ++F +  +  A      M+++   P   T+  ++ GL ++   Q A ++   + K
Sbjct: 688 IDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEK 744



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 171/395 (43%), Gaps = 44/395 (11%)

Query: 115 GDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT 174
           G + N+G  +Y       +   +   Y ALI  L K  K                     
Sbjct: 588 GTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHK--------------------- 626

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
                          V  A E+LD M   GCEP+  ++  L+D  CK   +  A ++F  
Sbjct: 627 ---------------VVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFR 671

Query: 235 MRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +  + P++  +TSL+    K+ +L  A  VL QM ++   P++V Y  ++ G  ++G+
Sbjct: 672 MSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGE 731

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
              A +LL  M ++GC+PN  +YT LI  L +  K++ + + F +M   GC  + VTY  
Sbjct: 732 CQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRV 791

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI+  C +  +D  + +L  M Q         Y  ++    KK      + L+ E+   G
Sbjct: 792 LINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKK--FIASLGLLEELESHG 849

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS---PGTDSFVVMVHGFLGQGCLI 470
            V     Y ++I    K G L++A+ +  EM   S S      D++  ++        L 
Sbjct: 850 MVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLE 909

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
           +A E + E+  +G++  P+      L+  L++  K
Sbjct: 910 KAFELYSEITRKGVV--PELSAFICLIKGLIKVNK 942



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 120/258 (46%), Gaps = 15/258 (5%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFA 185
           +S  PN V     Y A+I  L ++ +      L+  M K    P ++T   +  L+    
Sbjct: 710 SSCTPNVV----TYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVT---YTSLIDGLG 762

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LR 244
            +  V  ++++  +M   GC P+   +  L++  C    + EA  L  EM++ + P  ++
Sbjct: 763 KSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQ 822

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            + S++ G+ K  K + +  +L +++  G      VY  L+  +++ G++  A EL KEM
Sbjct: 823 GYCSVVQGFSK--KFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEM 880

Query: 305 RRKGCDPNANS---YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
                  N  S   YT LIQALC   ++E+A   + E+ R G   ++  +  LI G  K 
Sbjct: 881 MEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKV 940

Query: 362 RKIDRCYEILDSMIQRGI 379
            K +   ++  SM   G+
Sbjct: 941 NKWNEALQLCYSMCDEGV 958



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMV 190
            Y+ +   Y +LI ++ K R+      ++ +M +    P ++T    +  + R       
Sbjct: 676 GYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGEC--- 732

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           +KA+++L  M K GC P+   +  L+D L K+  V  + +LF +M  +   P+   +  L
Sbjct: 733 QKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVL 792

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +   C  G L EA  +L +MK   +   +  Y +++ G+++  K   +  LL+E+   G 
Sbjct: 793 INHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK--KFIASLGLLEELESHGM 850

Query: 310 DPNANSYTVLIQALC---RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
              A  Y +LI +     R+EK  E ++  +E+  S       TYT+LI   C + ++++
Sbjct: 851 VSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEK 910

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            +E+   + ++G++P    ++ ++    K  +  E ++L   M
Sbjct: 911 AFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSM 953



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 17/191 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVI--LMRRFASAR 188
           PNYV     YR LI             +L+ EM++   P+ +     V+    ++F ++ 
Sbjct: 784 PNYV----TYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIAS- 838

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP----SLR 244
                + +L+E+  +G      V+G L+D+  K   +++A +L  EM E        S  
Sbjct: 839 -----LGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKD 893

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +TSL+   C   +L +A  +  ++   G  P++  +  L+ G  ++ K  +A +L   M
Sbjct: 894 TYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSM 953

Query: 305 RRKGCDPNANS 315
             +G +  +N+
Sbjct: 954 CDEGVNWQSNN 964


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 194/382 (50%), Gaps = 4/382 (1%)

Query: 191 KKAIEVLDEMPKY--GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           ++A+++L  M K   GC P+   +  ++    +   V +A  LF EM ++   P +  ++
Sbjct: 207 QRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYS 266

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S +   CK   + +A+ VL QM   GFEPD V YN ++ GY+ +G+  +   + +EM R+
Sbjct: 267 SYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRR 326

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +    + +LC+  K +EA   F  M   G + D+VTY+ L+ G+     +   
Sbjct: 327 GLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDM 386

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             + +SM   GI+ +   Y  ++ A+ K+  ++E + +  +M++ G +PD   Y  VI  
Sbjct: 387 LNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAA 446

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             ++G L +A++ +N+M A  L P T  +  ++ GF   G L++A E   EM+ RG +  
Sbjct: 447 FSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRG-IPR 505

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P      +++NSL +  +V  A+D++  ++  G   +V  +   I      G +++A   
Sbjct: 506 PNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGV 565

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
              M+   + P   T++ L+ G
Sbjct: 566 LDAMISVGIEPDVVTYSALLDG 587



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 209/490 (42%), Gaps = 19/490 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
            PN V     Y  +I    +  +      L  EM ++   P ++T   ++        AR
Sbjct: 224 SPNVVS----YNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYI---DALCKAR 276

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA  VL +M   G EPD+  + C++         KE A +F EM  R   P +    
Sbjct: 277 AMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCN 336

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S +   CK GK  EA      M   G +PD+V Y+ LL GYA  G + D   L   M   
Sbjct: 337 SYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGN 396

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G   + + Y +LI A  +   M+EA   F +M+  G   D  TY T+I+ F +  ++   
Sbjct: 397 GIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADA 456

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIR 426
            +  + MI  G+ P+ + Y  ++        L +  EL+ EM   G   P+   +N +I 
Sbjct: 457 MDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIIN 516

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + EA ++++ +      P   +F  ++ G+   G + +A      M+  G+  
Sbjct: 517 SLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGI-- 574

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   T  ALL+   R  +++    ++  +++KG +     + I +H LF++G    A  
Sbjct: 575 EPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKK 634

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF------KMY 600
            C +M+++       T   ++ GL +      A  + +K+  M  +  I         MY
Sbjct: 635 MCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMY 694

Query: 601 KRRGERDLKE 610
           K R   +  E
Sbjct: 695 KVRKREEANE 704



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 185/383 (48%), Gaps = 9/383 (2%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           +  KP L+T   + +L+  +A+   V   + + + M   G   D  V+  L+DA  K   
Sbjct: 361 KGHKPDLVT---YSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGM 417

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           + EA  +F +M+ER   P    + +++  + + G+L +A     QM   G +PD +VYN+
Sbjct: 418 MDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNS 477

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCD-PNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           L+ G+   G +  A EL+ EM  +G   PN   +  +I +LC+  ++ EA   F  +   
Sbjct: 478 LIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHI 537

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   DV+T+ +LI G+    K+++ + +LD+MI  GI P+ +TY  ++  + +   +++ 
Sbjct: 538 GERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDG 597

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L  EM   G  P    Y +++      G    A  + +EM  +  +    +  +++ G
Sbjct: 598 LILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                C  EA   FK++   G ++       +  +++++ + +K E A +++  I   G 
Sbjct: 658 LCRNNCDDEAIALFKKL---GAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGL 714

Query: 522 ELNVYAWTIWIHSLFSNGHVKEA 544
             N   + + I +L   G V+EA
Sbjct: 715 VPNASTYGVMITNLLKEGSVEEA 737



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 178/385 (46%), Gaps = 38/385 (9%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           V  + VY  LI +  K         +  +M +E+  +     +  ++  F+    +  A+
Sbjct: 399 VADHSVYNILIDAYGKRGMMDEAMLIFTQM-QERGVMPDAWTYGTVIAAFSRMGRLADAM 457

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYG 252
           +  ++M   G +PD  V+  L+   C + ++ +A +L  EM  R   +P+   F S++  
Sbjct: 458 DKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINS 517

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CKEG++VEA+ +   +   G  PD++ +N+L+ GY  +GKM  AF +L  M   G +P+
Sbjct: 518 LCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPD 577

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG-FCKSRKIDR---CY 368
             +Y+ L+   CR  ++++    F EM   G +   +TY  ++ G F   R +     C+
Sbjct: 578 VVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCH 637

Query: 369 EILDS----------MIQRGILPNQ--------------------LTYLHIML-AHEKKE 397
           E+++S          +I  G+  N                     +  ++ M+ A  K  
Sbjct: 638 EMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVR 697

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           + EE  EL   +   G VP+ S Y V+I    K G ++EA N+++ ME +  +P +    
Sbjct: 698 KREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLN 757

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGR 482
            ++   L +G + +A  Y  ++ G+
Sbjct: 758 NIIRVLLEKGEISKAGNYLSKVDGK 782



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 146/329 (44%), Gaps = 1/329 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY +LI+             L+ EM         T  F  ++        V +A ++ D 
Sbjct: 474 VYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDL 533

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
           +   G  PD   F  L+D       +++A  + D M     +P +  +++LL G+C+ G+
Sbjct: 534 VIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGR 593

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +   +  +M   G +P  + Y  +L G    G+   A ++  EM   G   + ++  +
Sbjct: 594 IDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGI 653

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++  LCR    +EA   F ++     + ++    T+I    K RK +   E+ DS+   G
Sbjct: 654 ILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATG 713

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++PN  TY  ++    K+  +EE   +   M K GC P     N +IR+  + GE+ +A 
Sbjct: 714 LVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAG 773

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           N  ++++  ++S    +  +M+  F  +G
Sbjct: 774 NYLSKVDGKTISLEASTASLMLSLFSRKG 802



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 119/280 (42%), Gaps = 40/280 (14%)

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKM-------------------------------- 329
           +E R +   P   +Y +L+   CR  +                                 
Sbjct: 108 EEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHA 167

Query: 330 ----EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR--GILPNQ 383
               +  N     M   G E D ++Y+T++   C+  +  R  ++L +M+++  G  PN 
Sbjct: 168 KRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNV 227

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           ++Y  ++    ++ E+ +   L  EM + G VPDV  Y+  I   CK   + +A  V  +
Sbjct: 228 VSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQ 287

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M +    P   ++  M+HG+   G   E    F+EM  RGL+  P   T  + ++SL + 
Sbjct: 288 MISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLM--PDIFTCNSYMSSLCKH 345

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            K + A + +  +  KG + ++  +++ +H   + G+V +
Sbjct: 346 GKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVD 385



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 71/199 (35%), Gaps = 40/199 (20%)

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           R  LP   TY  +M    +         L G   K G   DV   N++++  C      +
Sbjct: 113 RVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDD 172

Query: 437 AVNVW-NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           AVNV  + M    + P T S+                                       
Sbjct: 173 AVNVLLHRMPELGVEPDTISY-------------------------------------ST 195

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTK--GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
           +L SL    + + A D+   +V K  GC  NV ++   IH  F  G V +AC+   +MM 
Sbjct: 196 VLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQ 255

Query: 554 ADVMPQPDTFAKLMRGLKK 572
             V+P   T++  +  L K
Sbjct: 256 QGVVPDVVTYSSYIDALCK 274



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 41/245 (16%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +P+ V     Y AL+    +  +      L  EM  +  +  T    +IL   F   R V
Sbjct: 575 EPDVV----TYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTV 630

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF------------------ 232
             A ++  EM + G   D    G +L  LC+N+   EA  LF                  
Sbjct: 631 G-AKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTM 689

Query: 233 ----------DEMRERFK--------PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
                     +E  E F         P+   +  ++    KEG + EA  +   M+ +G 
Sbjct: 690 IDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGC 749

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            P   + NN++    + G+++ A   L ++  K     A++ ++++    R  K  E  +
Sbjct: 750 APSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGKYREQIK 809

Query: 335 AFVEM 339
           +   M
Sbjct: 810 SLPAM 814


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 225/520 (43%), Gaps = 41/520 (7%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           ++ W  +  N+ HS   + +L+  L + R   A   +   M K           + L+RR
Sbjct: 72  FFRWIRRHHNFPHSLATHHSLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLNLLRR 131

Query: 184 FASA-----------------------------RMVKKAIEVLDEMPK---YGCEPDEFV 211
             +A                              MV + I +  EM         P+   
Sbjct: 132 MNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLIT 191

Query: 212 FGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
              +L++ CK  ++  A   F   +R    P L  +TSL+ G+C+   +  A  V   M 
Sbjct: 192 LNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMP 251

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
                 + V Y NL+ G  + GK+ +A E    MR  GC P   +YTVL+ ALC   +  
Sbjct: 252 ----RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGREL 307

Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           EA   F EM   GCE +V TYT LI   CK  ++D   ++L+ M+++G+ P+ + +  ++
Sbjct: 308 EALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALI 367

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
            ++ K+  +E+ V ++G M      P+V  YN +I   C+   +  A+ + N+M  + LS
Sbjct: 368 GSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLS 427

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P   ++  ++HG    G +  A   F+ M+  G   +P   T  A +  L R  +V  A 
Sbjct: 428 PDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGF--SPDQWTFNAFMVCLCRMGRVGEAH 485

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +   +  K  + N +A+T  I      G ++ A S    M+  + +P   TF  ++ GL
Sbjct: 486 QILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL 545

Query: 571 KKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKE 610
           +K    Q A  + E + K   + + T   Y    E  LKE
Sbjct: 546 RKEGKVQDAMLLVEDMAKF--DVKPTLHTYNILVEEVLKE 583



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 181/366 (49%), Gaps = 3/366 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+     A  + +A+E    M + GC P    +  L+ ALC++    EA  LF EMRER 
Sbjct: 261 LIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERG 320

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T L+   CKEG++ EA  +L +M + G  P +V +N L+  Y + G M DA 
Sbjct: 321 CEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAV 380

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            +L  M  K   PN  +Y  LI   CR + M+ A     +M  S    DVVTY TLI G 
Sbjct: 381 GVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGL 440

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+   +D    +   MI+ G  P+Q T+   M+   +   + E  +++  +++     + 
Sbjct: 441 CEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANE 500

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y  +I   CK G+++ A +++  M A    P + +F VM+ G   +G + +A    ++
Sbjct: 501 HAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVED 560

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M    +   P   T   L+  +L+    + A ++ + +++ G + NV  +T +I +  S 
Sbjct: 561 MAKFDV--KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQ 618

Query: 539 GHVKEA 544
           G ++EA
Sbjct: 619 GRLEEA 624



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/513 (23%), Positives = 218/513 (42%), Gaps = 68/513 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L +  K          MR E     T   + +L+     +    +A+ +  EM
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMR-EDGCFPTVRTYTVLVCALCESGRELEALSLFGEM 316

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG-- 257
            + GCEP+ + +  L+D LCK   + EA K+ +EM E+   PS+  F +L+  +CK G  
Sbjct: 317 RERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMM 376

Query: 258 -------KLVEAKYV--------------------------LVQMKDAGFEPDIVVYNNL 284
                   L+E+K V                          L +M ++   PD+V YN L
Sbjct: 377 EDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTL 436

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G  ++G +  A  L + M R G  P+  ++   +  LCRM ++ EA++    ++    
Sbjct: 437 IHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHV 496

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           +A+   YT LI G+CK+ KI+    +   M+    LPN +T+  ++    K+ ++++ + 
Sbjct: 497 KANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAML 556

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ +M K    P +  YN+++    K  +   A  + N + ++   P   ++   +  + 
Sbjct: 557 LVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYC 616

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            QG L EA E   ++   G+L       L  L+N+      ++ A  V   +   GCE +
Sbjct: 617 SQGRLEEAEEMVIKIKNEGVLLDSFIYNL--LINAYGCMGLLDSAFGVLRRMFGTGCEPS 674

Query: 525 VYAWTIWIHSLFSNGHVKEACSYC-LD----------------------------MMDAD 555
              ++I +  L    H KE  +   LD                            M +  
Sbjct: 675 YLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECG 734

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            +P  +T++KL+ GL K+    +A  +   +R+
Sbjct: 735 CVPNLNTYSKLINGLCKVGRLNVAFSLYHHMRE 767



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/463 (22%), Positives = 206/463 (44%), Gaps = 58/463 (12%)

Query: 118 GNLGYRYYMWASKQPNYVHSYD-VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITT 174
           G +G  + +  S +  +V + +  Y ALI    K  K     +L + M  E+  P  IT 
Sbjct: 479 GRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITF 538

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            V +  +R+      V+ A+ ++++M K+  +P    +  L++ + K      A ++ + 
Sbjct: 539 NVMIDGLRKEGK---VQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNR 595

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           +    ++P++  +T+ +  +C +G+L EA+ +++++K+ G   D  +YN L++ Y  MG 
Sbjct: 596 LISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGL 655

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALC-RMEKMEEANRAFVEMERSGCEADVVTYT 352
           +  AF +L+ M   GC+P+  +Y++L++ L     K E +N   +++  +    D     
Sbjct: 656 LDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIW 715

Query: 353 TLISGFCKSRKIDRCYE--ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           +         KID      + + M + G +PN  TY  ++    K   L     L   MR
Sbjct: 716 S---------KIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMR 766

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + G  P    +N ++   CKLG   EAV + + M   S     +S+ +++          
Sbjct: 767 EGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLI---------- 816

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
             C  F++M                           E A+ V+  ++  G   +  AW +
Sbjct: 817 --CGLFEQM-------------------------NKEKAEAVFCSLLRCGYNYDEVAWKV 849

Query: 531 WIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKLMRGLKK 572
            I  L   G+V + CS  L++M+ +     P+T++ LM+ L +
Sbjct: 850 LIDGLAKTGYVDQ-CSELLNLMEKNGCRLHPETYSMLMQELNR 891


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 206/442 (46%), Gaps = 40/442 (9%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + I+++      M ++A+++   M K G  C P+   +  ++    K     +A  LF E
Sbjct: 231 YSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHE 290

Query: 235 M-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M R+  KP +  +  ++   CK   + +A+ VL QM   G +PD V YN ++ GYA +G+
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGR 350

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A ++ ++M+ +G  PN       + +LC+  + +EA   F  M   G + D+V+Y T
Sbjct: 351 LKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCT 410

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+           + +SM   GI  +   +  ++ A+ K+  +++ + +  EM++ G
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PDV  Y+ VI    ++G L +A+  +N+M A  + P T  +  ++ GF   G L++A 
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS------------------- 514
           E   EM+ +G +  P      +++NSL +  +V  A D++                    
Sbjct: 531 ELVSEMINKG-IPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLID 589

Query: 515 --CIVTK--------------GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
             C+V K              G E ++  ++  +   F NG + +  +   +M    V P
Sbjct: 590 GYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKP 649

Query: 559 QPDTFAKLMRGLKKLYNRQIAA 580
              T+  ++ GL +   R +AA
Sbjct: 650 NTVTYGIMLAGLFR-AGRTVAA 670



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 202/453 (44%), Gaps = 48/453 (10%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V     Y  +I    K  + G   +L  EM ++  KP ++T   + +++     AR
Sbjct: 262 SPNVV----AYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVT---YNLIIDALCKAR 314

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCL--------------------------------- 215
            + KA  VL +M   G +PD   + C+                                 
Sbjct: 315 AMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICN 374

Query: 216 --LDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
             L +LCK+   KEAA++FD M  +  KP +  + +LL+G+  EG   +   +   MK  
Sbjct: 375 SFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSN 434

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G   D  V+N L+  YA+ G + DA  +  EM+++G  P+  +Y+ +I A  RM ++ +A
Sbjct: 435 GIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDA 494

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIML 391
              F +M   G + +   Y ++I GFC    + +  E++  MI +GI  P+ + +  ++ 
Sbjct: 495 MEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVIN 554

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           +  K   + +  ++   +  IG  PDV  +  +I   C +G++ +A  + + ME   +  
Sbjct: 555 SLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVET 614

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++  ++ G+   G + +    F+EM  +G+   P   T   +L  L RA +   A+ 
Sbjct: 615 DIVTYSTLLDGYFKNGRINDGLTLFREMQRKGV--KPNTVTYGIMLAGLFRAGRTVAARK 672

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +  ++  G  + V  + I +  L  N    EA
Sbjct: 673 KFHEMIESGTTVTVSIYGIILGGLCRNNCADEA 705



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 177/352 (50%), Gaps = 13/352 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I + S+M +         +M  R  +P    T V+  +++ F     + KA E++ 
Sbjct: 478 YSTVISAFSRMGRLTDAMEKFNQMVARGIQPN---TAVYHSIIQGFCMHGGLVKAKELVS 534

Query: 199 EMPKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFD---EMRERFKPSLRHFTSLLYGWC 254
           EM   G   PD   F  ++++LCK+  V +A  +FD   ++ ER  P +  FTSL+ G+C
Sbjct: 535 EMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGER--PDVITFTSLIDGYC 592

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             GK+ +A  +L  M+  G E DIV Y+ LL GY + G++ D   L +EM+RKG  PN  
Sbjct: 593 LVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTV 652

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y +++  L R  +   A + F EM  SG    V  Y  ++ G C++   D    +   +
Sbjct: 653 TYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKL 712

Query: 375 IQRGILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
               +    +T L+ M+ A  K +  EE  EL   +   G +P+ S Y V+I    K G 
Sbjct: 713 GTMNV-KFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGA 771

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +++A N+++ ME + + PG+     ++   L +G + +A  Y  ++ G+ +L
Sbjct: 772 VEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRIL 823



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 118/242 (48%), Gaps = 5/242 (2%)

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE-LM 406
           V TY+ L+   C++R+ D    +   +++ G+  +Q+T   ++         EE V  L+
Sbjct: 157 VHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLL 216

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFL 464
             M ++GCVP+V +Y+++++  C     + A++++  M  E  + SP   ++  ++HGF 
Sbjct: 217 HRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFF 276

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G   +AC  F EM  +G+   P   T   ++++L +A+ ++ A+ V   + T G + +
Sbjct: 277 KEGETGKACSLFHEMTRQGV--KPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPD 334

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
              +   IH   + G +KEA      M    ++P        +  L K    + AAEI +
Sbjct: 335 TVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFD 394

Query: 585 KV 586
            +
Sbjct: 395 SM 396



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 40/264 (15%)

Query: 314 NSYTVLIQALCR-----------------------------------MEKMEEA-NRAFV 337
           ++Y++L+   CR                                     + EEA N    
Sbjct: 158 HTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLH 217

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG--ILPNQLTYLHIMLAHEK 395
            M   GC  +V +Y+ ++ G C +    R  ++   M + G    PN + Y  ++    K
Sbjct: 218 RMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFK 277

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           + E  +   L  EM + G  PDV  YN++I   CK   + +A  V  +M      P T +
Sbjct: 278 EGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVT 337

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  M+HG+   G L EA + F++M  RGL+  P      + L SL +  + + A +++  
Sbjct: 338 YNCMIHGYATLGRLKEAAKMFRKMKSRGLI--PNIVICNSFLASLCKHGRSKEAAEIFDS 395

Query: 516 IVTKGCELNVYAWTIWIHSLFSNG 539
           +  KG + ++ ++   +H   S G
Sbjct: 396 MTAKGHKPDIVSYCTLLHGYASEG 419


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 216/434 (49%), Gaps = 20/434 (4%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN++     Y  +I    K     + + L  +M +   KP +IT  V +  + R  + RM
Sbjct: 221 PNHI----TYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCR--AGRM 274

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTS 248
            + A  VLDEM      PD F +  L D   +    +    LF+E +++  K      + 
Sbjct: 275 GETA-AVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSI 333

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL G CK+GK+ +A+ VL  + ++G     V+YN L++GY Q+G +  AF + ++M+ + 
Sbjct: 334 LLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRL 393

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y  LI  L ++E++ EA+   +EME++G    V T+ TLI  + ++ ++++C+
Sbjct: 394 IRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCF 453

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            IL  M ++G+ PN ++Y  I+ A  K  ++ E V ++ +M     +P    YN +I   
Sbjct: 454 IILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAY 513

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            + G   +A  +  +M+++ + P   ++ +++ G   Q  + EA E    +   GL  AP
Sbjct: 514 IECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGL--AP 571

Query: 489 QYGTLKALLNSLL----RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              +   L+++        + +E+ K++W C    G + +   + +   SL   G V E 
Sbjct: 572 DVISYNTLISACCYRSNTDRALELEKEMWKC----GIKPSPRTYRMLFSSLGGAGRVHEM 627

Query: 545 CSYCLDMMDADVMP 558
            +    M+D DV+P
Sbjct: 628 ENLYQQMLDKDVVP 641



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 151/317 (47%), Gaps = 5/317 (1%)

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           L TT ++  L+  +     ++ A  +  +M      PD   +  L++ L K   + EA  
Sbjct: 360 LQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHD 419

Query: 231 LFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           L  EM +    PS+  F +L+  + + G+L +   +L  M++ G +P++V Y ++++ + 
Sbjct: 420 LVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFC 479

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + GK+ +A  +L +M  K   P A  Y  +I A       ++A     +M+ SG    +V
Sbjct: 480 KNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIV 539

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY  LI G CK  +I    E+LDS+   G+ P+ ++Y  ++ A   +   +  +EL  EM
Sbjct: 540 TYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEM 599

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL--GQG 467
            K G  P    Y ++       G + E  N++ +M    + P +  + +MV  +   G+ 
Sbjct: 600 WKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEE 659

Query: 468 CLIEACEYFKEMVGRGL 484
             +EA    KEM  +G+
Sbjct: 660 SKVEALR--KEMSDKGI 674



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 6/316 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI    ++      +++ ++M+    +P  IT   +  L+        + +A +++
Sbjct: 365 IYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHIT---YNALINGLGKVERITEAHDLV 421

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM K G  P    F  L+DA  +   +++   +  +M+E+  KP++  + S++  +CK 
Sbjct: 422 IEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN 481

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK++EA  +L  M      P   VYN ++  Y + G    AF L ++M+  G  P+  +Y
Sbjct: 482 GKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTY 541

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +LI+ LC+  ++ EA      +   G   DV++Y TLIS  C     DR  E+   M +
Sbjct: 542 NLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWK 601

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI P+  TY  +  +      + E   L  +M     VP    YN+++    K GE  +
Sbjct: 602 CGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESK 661

Query: 437 AVNVWNEMEAASLSPG 452
              +  EM    ++ G
Sbjct: 662 VEALRKEMSDKGIAVG 677



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 182/407 (44%), Gaps = 42/407 (10%)

Query: 195 EVLDEMPKYGCE----PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           E +  + + GC+    P+ F +  ++  L K  +  +A KLFDEM E+   P+   + ++
Sbjct: 170 EAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTM 229

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G  K+G L     +  QM   G +P+++ YN LLSG  + G+M +   +L EM  +  
Sbjct: 230 IDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKM 289

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y++L     R    +     F E  + G +    T + L++G CK  KI +  E
Sbjct: 290 VPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEE 349

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +L +++  G+L  Q T +                                 YN +I   C
Sbjct: 350 VLQTLVNSGLL--QTTVI---------------------------------YNTLINGYC 374

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           ++G+L+ A +++ +M++  + P   ++  +++G      + EA +   EM   G+   P 
Sbjct: 375 QIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGV--NPS 432

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T   L+++  RA ++E    + S +  KG + NV ++   +++   NG + EA +   
Sbjct: 433 VETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILD 492

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           DM   DV+P    +  ++    +  +   A  + EK++       I 
Sbjct: 493 DMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIV 539


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 221/473 (46%), Gaps = 38/473 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI+   + +     + L+ EM+K +  +I+   +  +++   S+  +  A  ++ EM
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKK-RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC P+  ++  L+    +NS   +A ++  EM+E+   P +  + SL+ G  K  ++
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA+  LV+M + G +P+   Y   +SGY +  +   A + +KEMR  G  PN    T L
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+ EK+ EA  A+  M   G   D  TYT L++G  K+ K+D   EI   M  +GI
Sbjct: 564 INEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+  +Y  ++    K   +++   +  EM + G  P+V  YN+++   C+ GE+++A  
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-------------- 485
           + +EM    L P   ++  ++ G+   G L EA   F EM  +GL+              
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 486 -------SAPQYGTLK-----------ALLNSLLRAQKVEMAKDVWSCIVTKGCE----L 523
                  +   +GT K           AL+N + +  K E+  +V + ++    +     
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
           N   + I I  L   G+++ A      M +A++MP   T+  L+ G  K+  R
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRR 856



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 141/569 (24%), Positives = 249/569 (43%), Gaps = 19/569 (3%)

Query: 66  SHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY 125
           +  EF      +   LK   S + K  + L+++  VL  GL +  I R  DA +L     
Sbjct: 247 TEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCK--IKRLEDAKSLLVEMD 304

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE----KPQLITTEVFVILM 181
                  N+ +S      LI  L K R   A   L+ EM       KP +    + V+  
Sbjct: 305 SLGVSLDNHTYSL-----LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVM-- 357

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FK 240
              +   +++KA  + D M   G  P    +  L++  C+  +V++  +L  EM++R   
Sbjct: 358 ---SKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV 414

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
            S   + +++ G C  G L  A  ++ +M  +G  P++V+Y  L+  + Q  +  DA  +
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           LKEM+ +G  P+   Y  LI  L + ++M+EA    VEM  +G + +  TY   ISG+ +
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           + +     + +  M + G+LPN++    ++  + KKE++ E       M   G + D   
Sbjct: 535 ASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKT 594

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y V++    K  ++ +A  ++ EM    ++P   S+ V+++GF   G + +A   F EMV
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             GL   P       LL    R+ ++E AK++   +  KG   N   +   I     +G 
Sbjct: 655 EEGL--TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
           + EA     +M    ++P    +  L+ G  +L + + A  I    +K  A     F   
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNAL 772

Query: 601 KRRGERDLKEKAKKQVDGRKRRARQRRWG 629
                +  K + K +V  R       R+G
Sbjct: 773 INWVFKFGKTELKTEVLNRLMDGSFDRFG 801



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 125/565 (22%), Positives = 237/565 (41%), Gaps = 97/565 (17%)

Query: 90  KLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYY----MWASK-QPNYVHSYDVYRAL 144
           +L + ++   +V+ P     V+     +G+L   Y     M AS  +PN V    +Y  L
Sbjct: 403 ELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV----IYTTL 458

Query: 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVLDEMPK 202
           IK+  +  +FG    +++EM   K Q I  ++F    L+   + A+ + +A   L EM +
Sbjct: 459 IKTFLQNSRFGDAMRVLKEM---KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVE 261
            G +P+ F +G  +    + S    A K   EMRE    P+    T L+  +CK+ K++E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIE 575

Query: 262 A-----------------------------------KYVLVQMKDAGFEPDIVVYNNLLS 286
           A                                   + +  +M+  G  PD+  Y  L++
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G++++G M  A  +  EM  +G  PN   Y +L+   CR  ++E+A     EM   G   
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + VTY T+I G+CKS  +   + + D M  +G++P+   Y  ++    +  ++E  + + 
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755

Query: 407 GEMRKIGCV---------------------------------------PDVSNYNVVIRL 427
           G  +K GC                                        P+   YN++I  
Sbjct: 756 GTNKK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDY 814

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G L+ A  ++++M+ A+L P   ++  +++G+   G   E    F E +  G+   
Sbjct: 815 LCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGI--E 872

Query: 488 PQYGTLKALLNSLLR----AQKVEMAKDVWS-CIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           P +     ++N+ L+     + + +   +++   V  GC+L++      +      G ++
Sbjct: 873 PDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEME 932

Query: 543 EACSYCLDMMDADVMPQPDTFAKLM 567
            A     +M+    +P   T  +L+
Sbjct: 933 VAEKVMENMVRLQYIPDSATVIELI 957



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 51/368 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLD 198
           Y  L+  L K  K      +  EMR +    I  +VF   +L+  F+    ++KA  + D
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKG---IAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  P+  ++  LL   C++  +++A +L DEM  +   P+   + +++ G+CK G
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-------- 309
            L EA  +  +MK  G  PD  VY  L+ G  ++  +  A  +     +KGC        
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFN 770

Query: 310 -------------------------------DPNANSYTVLIQALCRMEKMEEANRAFVE 338
                                           PN  +Y ++I  LC+   +E A   F +
Sbjct: 771 ALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ 830

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M+ +     V+TYT+L++G+ K  +    + + D  I  GI P+ + Y  I+ A  K+  
Sbjct: 831 MQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890

Query: 399 LEECVELMGEM-----RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
             + + L+ +M        GC   +S    ++    K+GE++ A  V   M      P +
Sbjct: 891 TTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDS 950

Query: 454 DSFVVMVH 461
            + + +++
Sbjct: 951 ATVIELIN 958



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 59/413 (14%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G   D  +FG L D       ++EA  +F   M     P L     LL    +  +L   
Sbjct: 146 GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 263 KYVLVQMKDAGFEPDIVVYNNLL-----SGYAQMGK----------------MTDAFELL 301
             V   M +     D+  Y+ L+     +G  Q+GK                +  A +L 
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           + M  KG  P   +Y VLI  LC+++++E+A    VEM+  G   D  TY+ LI G  K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 362 RKID-----------------------------------RCYEILDSMIQRGILPNQLTY 386
           R  D                                   +   + D MI  G++P    Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++  + +++ + +  EL+ EM+K   V     Y  V++  C  G+L  A N+  EM A
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
           +   P    +  ++  FL      +A    KEM  +G+  AP      +L+  L +A+++
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI--APDIFCYNSLIIGLSKAKRM 503

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           + A+     +V  G + N + +  +I           A  Y  +M +  V+P 
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 194/382 (50%), Gaps = 4/382 (1%)

Query: 191 KKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           ++A++++  M K G  C PD   F  ++    K   V +A  LF+EM ++   P +  + 
Sbjct: 212 QEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYN 271

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++   CK   + +A++VL QM D G EPD V YN ++ GY+  G   ++ ++ ++M  K
Sbjct: 272 SIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSK 331

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +++  + +LC+  + ++A   F  M   G   D+V+Y+ L+ G+    +    
Sbjct: 332 GLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADM 391

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +  SM  +GI+ N      ++ AH K+  ++E + +  EM+  G  P+V  Y+ +I  
Sbjct: 392 NNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISA 451

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++G L +A+  +++M +  + P T  +  ++HGF   G L++A E+  EM+ +G L  
Sbjct: 452 FCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG-LHR 510

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P      ++++SL    +V  A+DV++ ++  G    +  +   I      G +++A   
Sbjct: 511 PNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGV 570

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
              M+   + P   T   L+ G
Sbjct: 571 LDAMVSVGIEPDVVTNNTLVSG 592



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 201/480 (41%), Gaps = 81/480 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE----KPQLITTEVFVILMRRFASARMVKKAIEV 196
           Y  +IKSL    +      +++ M KE     P +++   F  ++  F     V KA  +
Sbjct: 198 YNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVS---FNTVIHGFFKQGEVSKACNL 254

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSV------------------------------- 225
            +EM + G  PD   +  ++DALCK  ++                               
Sbjct: 255 FNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSC 314

Query: 226 ----KEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
               KE+AK+F +M  +   P    F+S +   CK G+  +A+ +   M   G  PDIV 
Sbjct: 315 SGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVS 374

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y+ LL GYA  G+  D   L   M  KG   N +   +LI A  +   M+EA   F EM+
Sbjct: 375 YSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQ 434

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAH---- 393
             G   +VVTY+TLIS FC+  ++    E    MI  GI PN   Y   +H    H    
Sbjct: 435 GQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLV 494

Query: 394 EKKEELEE---------------------CVE--------LMGEMRKIGCVPDVSNYNVV 424
           + KE + E                     C+E        +   +  IG  P +  +N +
Sbjct: 495 KAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSL 554

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   C +G++++A  V + M +  + P   +   +V G+   G + +    F+EM+ + +
Sbjct: 555 IDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKV 614

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              P   T   +L+ LLRA +   AK ++  ++  G  +++  + I +  L  N    EA
Sbjct: 615 --KPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 672



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/514 (21%), Positives = 214/514 (41%), Gaps = 79/514 (15%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           Q   V     Y +++ +L K R       ++ +M  +  +P  +T   +  ++  ++ + 
Sbjct: 260 QKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVT---YNAIIHGYSCSG 316

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K++ ++  +M   G  PD   F   + +LCK+   K+A ++F  M  +   P +  ++
Sbjct: 317 HWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYS 376

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            LL+G+  EG+  +   +   M D G   +    N L+S +A+ G M +A  +  EM+ +
Sbjct: 377 ILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQ 436

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +Y+ LI A CRM ++ +A   F +M   G E +   Y +LI GFC    + + 
Sbjct: 437 GVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKA 496

Query: 368 YEILDSMIQRGI------------------------------------LPNQLTYLHIML 391
            E +  M+ +G+                                     P  +T+  ++ 
Sbjct: 497 KEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLID 556

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +    ++E+   ++  M  +G  PDV   N ++   CK G++ + + ++ EM    + P
Sbjct: 557 GYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKP 616

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL-------------- 497
            T ++ +++ G L  G    A + F EM+  G  +A    T K LL              
Sbjct: 617 TTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSG--TAVDIDTYKILLKGLCRNDLTDEAIT 674

Query: 498 ---------------------NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
                                N+L + ++ E A D+++ I T G   NV  + + I +L 
Sbjct: 675 LFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLL 734

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             G V+EA +    M  +   P       ++R L
Sbjct: 735 KEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 768



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 215/473 (45%), Gaps = 25/473 (5%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S D E+IF+ +      +P +   + +S ++L    TE    R  D  NL   ++  A K
Sbjct: 353 SKDAEEIFQYMTT-KGHMPDI---VSYS-ILLHGYATE---GRFADMNNL---FHSMADK 401

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
               V +      LI + +K         +  EM+ +  +P ++T   +  L+  F    
Sbjct: 402 --GIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVT---YSTLISAFCRMG 456

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHF 246
            +  A+E   +M   G EP+  V+  L+   C +  + +A +   EM  +   +P++  F
Sbjct: 457 RLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFF 516

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           +S+++  C EG++++A+ V   +   G  P IV +N+L+ GY  +GKM  AF +L  M  
Sbjct: 517 SSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVS 576

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G +P+  +   L+   C+  K+++    F EM     +   VTY  ++ G  ++ +   
Sbjct: 577 VGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSA 636

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++   MI  G   +  TY  ++    + +  +E + L  ++  + C  D++  N +I 
Sbjct: 637 AKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMIN 696

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              K+   +EA +++  +  + L P   ++ VM+   L +G + EA   F  M   G   
Sbjct: 697 ALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSG--C 754

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI-WIHSLFSN 538
           AP    L  ++  LL  QK ++ K  +      G  +++ A T   + SLFS+
Sbjct: 755 APSSRLLNDIIRMLL--QKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSS 805



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRM-EKMEEANRAFVEM--------ERSG--- 343
           DA  L  E+ R+G   +  S    + AL R  + +  +N   + +        E +G   
Sbjct: 60  DAHHLFDELLRQGTPVHNRSLNDFLAALARAPDSVSCSNGPALVLALFNRICREEAGPRV 119

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN--QLTYLHIMLAHEKKEELEE 401
               V TY  L+   C++R+ D     +  +++ G+     Q T     L H K+ + E 
Sbjct: 120 APLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTD-EA 178

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVM 459
              L+  M ++ CVPD  +YN VI+  C     +EA+++   M  E    SP   SF  +
Sbjct: 179 VDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTV 238

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           +HGF  QG + +AC  F EMV +G++  P  GT  +++++L +A+ ++ A+ V   +V K
Sbjct: 239 IHGFFKQGEVSKACNLFNEMVQKGVV--PDVGTYNSIVDALCKARAMDKAEFVLRQMVDK 296

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
           G E +   +   IH    +GH KE+      M    ++P   TF+  M  L K    + A
Sbjct: 297 GVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDA 356

Query: 580 AEI 582
            EI
Sbjct: 357 EEI 359



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 145/329 (44%), Gaps = 1/329 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY +LI               + EM  +         F  ++        V  A +V + 
Sbjct: 479 VYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNL 538

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
           +   G  P    F  L+D  C    +++A  + D M     +P +    +L+ G+CK GK
Sbjct: 539 VIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGK 598

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +   +  +M     +P  V YN +L G  + G+ + A ++  EM   G   + ++Y +
Sbjct: 599 IDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKI 658

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L++ LCR +  +EA   F ++    C+ D+    T+I+   K R+ +   ++  ++   G
Sbjct: 659 LLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSG 718

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++PN  TY  ++    K+  +EE   +   M K GC P     N +IR+  + G++ +A 
Sbjct: 719 LVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAG 778

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
              ++++   +S    +  +++  F  +G
Sbjct: 779 YYMSKVDGTIISLEASTTSLLMSLFSSKG 807


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 140/554 (25%), Positives = 258/554 (46%), Gaps = 53/554 (9%)

Query: 106 LTERVINRCGDAGNLGYRYYMWASKQP-NYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +T  V++R  D   LG +++ WASK   +   +   Y +L+K LS+ R F  +   +EEM
Sbjct: 66  VTHFVLDRINDV-ELGLKFFDWASKNSLSGSLNGTSYSSLLKLLSRFRVFPEIEFTLEEM 124

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNS 223
            K K  + T E    ++  +A   +V KA+EV   + K +   P  +    LL+ L K+ 
Sbjct: 125 -KTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLLVKHR 183

Query: 224 SVKEAAKLFDEMRERFKPS---LRHFTS--LLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
            ++ A +L+DEM +R       + ++T+  ++ G C +G++ +   ++      G  P+I
Sbjct: 184 RIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNI 243

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V YN L+ GY + G++  A++L K+++ KG  P   ++  L+   C+M   E  +   +E
Sbjct: 244 VFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLE 303

Query: 339 MERSG-----------------------------------CEADVVTYTTLISGFCKSRK 363
           M+  G                                   CE D+VTY TLI+ FC   +
Sbjct: 304 MKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGE 363

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           ++   ++L+  I+RG+ PN+LTY  ++  + K+ E  +  + + EM   G   D+ +Y  
Sbjct: 364 VEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGA 423

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I      GE+  A+ + + M    + P  + + V+++G   +G L  A     EM+ + 
Sbjct: 424 LIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQN 483

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           +  AP       L++  +R   ++ AK ++  I+ KG +  V  + + I     +G +  
Sbjct: 484 I--APDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDN 541

Query: 544 ACSYCLDMM-DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT-----F 597
           A   C+D M  A  +P   TF+ ++ G  K +N     +I   + K   +  +       
Sbjct: 542 AI-LCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLI 600

Query: 598 KMYKRRGERDLKEK 611
             Y R+GE  + EK
Sbjct: 601 NGYCRKGETKMAEK 614



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 189/410 (46%), Gaps = 5/410 (1%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K   ++ +   + +L+    KM  F A+  L+ EM K++   +  +++  ++        
Sbjct: 270 KMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEM-KDRGLSVNVQMYNNIIDARYKLGF 328

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTS 248
             KA + L EM +  CEPD   +  L++  C    V+EA KL ++ +R    P+   +T 
Sbjct: 329 DIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTP 388

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++G+CK+G+  +A   L++M  +G E D++ Y  L+ G    G++  A  +   M  +G
Sbjct: 389 LVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRG 448

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+AN Y VL+  L +  K+  A     EM       D   Y TL+ GF +   +D   
Sbjct: 449 ILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAK 508

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++   +I++G+ P  + Y  ++    K   ++  +  + +MR+   VPD+  ++ +I   
Sbjct: 509 KLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGY 568

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K   +   + ++  M   +  P   ++  +++G+  +G    A + F  M   GL   P
Sbjct: 569 VKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGL--KP 626

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
              T   L+ S  +  K+  A   +  ++   C  N  A+   ++  F+N
Sbjct: 627 SVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNG-FTN 675



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 165/367 (44%), Gaps = 17/367 (4%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           KA + L EM   G E D   +G L+  L     V  A  + D M  R   P    +  L+
Sbjct: 401 KATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLM 460

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G  K+GKL  AK +L +M D    PD  VY  L+ G+ + G + +A +L + +  KG D
Sbjct: 461 NGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLD 520

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P    Y V+I+   +   M+ A     +M R+    D+ T++T+I G+ K   ++   +I
Sbjct: 521 PGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKI 580

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M+++   PN +TY  ++  + +K E +   +L   MR  G  P V  Y+++I   CK
Sbjct: 581 FGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCK 640

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE--------------YF 476
             +L +AV+ +  M     +P   +F  +V+GF        + E              +F
Sbjct: 641 EAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFF 700

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             M+G G     +      +L  L + + V+ A  + + ++  G   +  ++   IH + 
Sbjct: 701 SRMIGDGW--TQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGIC 758

Query: 537 SNGHVKE 543
             G+ KE
Sbjct: 759 LEGNSKE 765



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 56/236 (23%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           + ++++ F+ + M+  AI  +D+M +    PD F F  ++D   K  ++    K+F  M 
Sbjct: 526 YNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMV 585

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY---AQMG 292
           ++  KP++  +TSL+ G+C++G+   A+ +   M+  G +P +V Y+ L+  +   A++G
Sbjct: 586 KQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLG 645

Query: 293 KMTDAFELLKEMRRKGCDPN---------------------------------------- 312
           K    FEL   M    C PN                                        
Sbjct: 646 KAVSYFEL---MLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSR 702

Query: 313 ---------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
                    A +Y  ++  LC+   ++ A +   +M   G  +D V++  LI G C
Sbjct: 703 MIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGIC 758


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 230/497 (46%), Gaps = 13/497 (2%)

Query: 70  FSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWAS 129
           F    + +  IL       P L   L      + P +  RV+ +  D  ++ + ++ WA 
Sbjct: 9   FLRPTQDVAEILLGILKPGPYLCRDLAGYASTVTPEVAGRVLQQVEDP-DVAWTFFQWAG 67

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASAR 188
            +P + H+      L+ +  K ++      L++E  + +P     E+ +  ++  F  A 
Sbjct: 68  NKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKE--ELEPLCFPNEIMYTTVINGFCKAG 125

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            V +A E+LDEM + G + D  +   L+  LC+   + EA + F  M E   P++  + +
Sbjct: 126 QVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNT 185

Query: 249 LLYGWCKEGKLVEAKYVLVQMK-----DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
           ++ G CK  ++ EA  +   M+       G EPD++ Y+ ++    +  ++  A+E  K 
Sbjct: 186 VVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKR 245

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           MR  GC PN  +Y+ LI  LC++++  E     + M+  G   +++ +  ++    K+ +
Sbjct: 246 MRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDE 305

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            ++  +  + +++ G  PN +TY   +    K   ++E   ++ EM +    PDV  Y+ 
Sbjct: 306 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSS 365

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   CK G + +A +V+  M      P   +F+ ++HGF       EA    ++MV  G
Sbjct: 366 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 425

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            +  P   T   L++ +  A  VE A +++  +  K  + +   +   I  L     V E
Sbjct: 426 FI--PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDE 483

Query: 544 ACSYCLDMMDAD-VMPQ 559
           A  + LD+M+AD V+P 
Sbjct: 484 AKEF-LDVMEADNVVPN 499



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 210/442 (47%), Gaps = 25/442 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           ++  LI+ L +  +        + M +E  P +IT    V        A  + +A+E+ D
Sbjct: 148 LHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVV---NGLCKANRIDEALELFD 204

Query: 199 EMPK-----YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
           +M K     +GCEPD   +  ++DALCK   V +A + F  MR     P++  ++SL+ G
Sbjct: 205 DMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDG 264

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CK  +  E   +L+ MK+ GF  +I+ +N +L    +  +   A +  + + + G  PN
Sbjct: 265 LCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPN 324

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y V +  LC+  +++EA R  +EM  S    DV+TY+++I GFCK+ ++D+  ++  
Sbjct: 325 VVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFT 384

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+    +P+ +T++ ++    + ++  E   +  +M   G +P +  YNV++   C   
Sbjct: 385 RMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGAD 444

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            ++ A+ ++++M+     P  +++  ++        + EA E+   M    ++  P    
Sbjct: 445 SVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVV--PNGAI 502

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF-------------SNG 539
             AL+  L +  +V+ A  V   +V  GC+     + I +  L+             S G
Sbjct: 503 CHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPG 562

Query: 540 HVKEACSYCLDMMDADVMPQPD 561
            V +A +Y L + +     +PD
Sbjct: 563 FVADAATYSLCVAEICKAGKPD 584



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 201/393 (51%), Gaps = 9/393 (2%)

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLV 260
           K G + + +    LL+A  K    +EA +L  E  E    P+   +T+++ G+CK G++ 
Sbjct: 69  KPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVD 128

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           +A  +L +MK+ G + D+++++ L+ G  + G++ +A E  K M  + C PN  +Y  ++
Sbjct: 129 QAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVV 187

Query: 321 QALCRMEKMEEANRAFVEMER-----SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
             LC+  +++EA   F +ME+      GCE DV++Y+T+I   CK++++D+ YE    M 
Sbjct: 188 NGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMR 247

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
             G  PN +TY  ++    K +   EC+EL+  M++ G   ++ ++N ++    K  E +
Sbjct: 248 AVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQE 307

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A   +  +  +   P   ++ V VHG    G + EA     EMV   +   P   T  +
Sbjct: 308 KACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKV--TPDVITYSS 365

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           +++   +A +++ A DV++ ++   C  +   +   +H    +   +EA     DM++A 
Sbjct: 366 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 425

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            +P   T+  LM  +    + + A EI  K+++
Sbjct: 426 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKR 458



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 153/367 (41%), Gaps = 38/367 (10%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           +KP ++T  V V        A  V +A  +L EM +    PD   +  ++D  CK   + 
Sbjct: 321 KKPNVVTYNVAV---HGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMD 377

Query: 227 EAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A  +F  M      P    F +LL+G+ +  K  EA  V   M +AGF P +  YN L+
Sbjct: 378 KADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLM 437

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
                   +  A E+  +M+RK   P+ N+Y  LIQ LCR  +++EA      ME     
Sbjct: 438 DCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVV 497

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP------------------------ 381
            +      L+   CK  ++D    +LD++++ G  P                        
Sbjct: 498 PNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKL 557

Query: 382 --------NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
                   +  TY   +    K  + +E VE++ +M   G  PD   Y  V+R  C L  
Sbjct: 558 LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDR 617

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           ++ A+  + +M +   +PG  ++ +++          EA   F+ MV  G    PQ  T+
Sbjct: 618 VESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGF--TPQAQTM 675

Query: 494 KALLNSL 500
           + L + L
Sbjct: 676 RTLSSCL 682



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 3/253 (1%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            ++     Y  L+  +       +   +  +M+++K Q      +  L++    AR V +
Sbjct: 425 GFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ-PDCNTYAPLIQCLCRARRVDE 483

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252
           A E LD M      P+  +   L++ LCK   V EA  + D + E     L     +L  
Sbjct: 484 AKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVE 543

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
                K  EA   L  ++  GF  D   Y+  ++   + GK  +A E++++M  KG  P+
Sbjct: 544 ELYLRKKWEAASKL--LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPD 601

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y  ++++LC ++++E A   F +M   GC   +VTYT LI   C +   D  + I +
Sbjct: 602 EGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFE 661

Query: 373 SMIQRGILPNQLT 385
           +M+  G  P   T
Sbjct: 662 AMVAAGFTPQAQT 674



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 7/227 (3%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           +QP+     + Y  LI+ L + R+       ++ M  +   +    +   L+        
Sbjct: 461 RQPDC----NTYAPLIQCLCRARRVDEAKEFLDVMEADN-VVPNGAICHALVEVLCKQGE 515

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           V +A  VLD + + GC+P    F  L++ L      + A+KL       F      ++  
Sbjct: 516 VDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLL--RSPGFVADAATYSLC 573

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +   CK GK  EA  V+ QM   G  PD   Y  +L     + ++  A    ++M  +GC
Sbjct: 574 VAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGC 633

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
            P   +YT+LI   C  +  +EA R F  M  +G      T  TL S
Sbjct: 634 APGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSS 680


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/515 (24%), Positives = 238/515 (46%), Gaps = 22/515 (4%)

Query: 120 LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI 179
           L   Y+   +    + H+   Y+ +I+ L +      V  L+++M+ E     + ++F+ 
Sbjct: 61  LASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGIS-CSEDLFIN 119

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           ++  +    + ++A+++   + ++GC+P   ++  LLDA+   +  +    ++  M R+ 
Sbjct: 120 VINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDG 179

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +  LL   CK  ++  A  +LV+M + G EPD+V Y  ++S  +++GK+ +A 
Sbjct: 180 KEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAR 239

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           EL    +     PN + Y  LI   CR  K++E      +M   G + +V+TY+T+IS  
Sbjct: 240 ELSIRFQ-----PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSL 294

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
                ++    +   M  RG  PN  T+  +M  +  +  + E + +   M + G  P+V
Sbjct: 295 SGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNV 354

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   C  G++ EAV+V ++ME    SP   ++  ++ GF   G L+ A E + +
Sbjct: 355 VAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNK 414

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI---VTKGCELNVYAWTIWIHSL 535
           M+  G +  P      +++N L R+    M    WS I    T  C  N   +  +I  L
Sbjct: 415 MMTNGCI--PNVVVYTSMVNVLCRSS---MFSQAWSLIEKMSTDNCPPNTVTFNTFIKGL 469

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
             +G V+ A +    M      P   T+ +++ GL K    + A E+  ++ +   E  +
Sbjct: 470 CCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNL 529

Query: 596 T-----FKMYKRRG--ERDLKEKAKKQVDGRKRRA 623
                 F  +   G  E  LK   K  V G K  A
Sbjct: 530 VTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDA 564



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 194/415 (46%), Gaps = 12/415 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN      VY ALI    +  K   V+ L+ +M ++   P +IT   +  ++   +   
Sbjct: 246 QPNV----SVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVIT---YSTVISSLSGIG 298

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V+ A+ V  +M   GC P+ + F  L+        V EA  +++ M E  F+P++  + 
Sbjct: 299 NVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYN 358

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L++G C  GK+ EA  V  +M+  G  P++  Y  L+ G+A+ G +  A E+  +M   
Sbjct: 359 TLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTN 418

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC PN   YT ++  LCR     +A     +M    C  + VT+ T I G C S +++  
Sbjct: 419 GCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECA 478

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M Q G  PN  TY  ++    K+  ++E +EL+ EM + G   ++  YN +   
Sbjct: 479 INLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGG 538

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C +G+ +EA+ +  +M    + P   ++  + + +  QG +  A +   ++   G    
Sbjct: 539 FCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKW-V 597

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHV 541
           P+     +LL  +     VE A      ++ +G  LN   W   +  LF++ GH+
Sbjct: 598 PEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFNSLGHL 652



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 204/429 (47%), Gaps = 11/429 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  L+ ++    +F  +  +   M+++  +P + T   + IL++       V  A ++L
Sbjct: 151 IYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYT---YNILLKALCKNNRVDGACKLL 207

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
            EM   GCEPD   +  ++ ++ K   V+EA     E+  RF+P++  + +L+ G+C+E 
Sbjct: 208 VEMSNKGCEPDVVSYTTVISSMSKLGKVEEA----RELSIRFQPNVSVYNALINGFCREY 263

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ E   +L QM + G +P+++ Y+ ++S  + +G +  A  +  +M  +GC PN  ++T
Sbjct: 264 KVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFT 323

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L++      ++ EA   +  M   G E +VV Y TLI G C   K+     +   M + 
Sbjct: 324 SLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERN 383

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN  TY  ++    K  +L    E+  +M   GC+P+V  Y  ++ + C+     +A
Sbjct: 384 GCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQA 443

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            ++  +M   +  P T +F   + G    G +  A   F +M   G   +P   T   +L
Sbjct: 444 WSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYG--CSPNIKTYNEVL 501

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + LL+  +++ A ++ + +  KG ELN+  +        + G  +EA      M+   V 
Sbjct: 502 DGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVK 561

Query: 558 PQPDTFAKL 566
           P   T+  L
Sbjct: 562 PDAITYNTL 570


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 215/467 (46%), Gaps = 45/467 (9%)

Query: 84  FHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRA 143
           F  R+P  +L   +    L P ++  V+ +  +  ++G+R++ ++  + N  HS+  Y  
Sbjct: 49  FVYRVPDSDLCFCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNL 108

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L +SL K         + E M+ +        +   L+  FA    +  A  +L  +  +
Sbjct: 109 LTRSLCKAGLHDLAGQMFECMKSDGVS-PNNRLLGFLVSSFAEKGKLHFATALL--LQSF 165

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEA 262
             E    V   LL+ L K   V++A KLFDE +R +     + F  L+ G C  GK  +A
Sbjct: 166 EVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKA 225

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQ 321
             +L  M   G EPDIV YN L+ G+ +  ++  A E+ K+++    C P+  +YT +I 
Sbjct: 226 LELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMIS 285

Query: 322 ALCRMEKMEEANRAFVEMER-----------------------------------SGCEA 346
             C+  KM EA+    +M R                                    GC  
Sbjct: 286 GYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFP 345

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DVVT+T+LI G+C+  ++ + + + + M  RG+ PN  TY  ++ A   +  L +  EL+
Sbjct: 346 DVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELL 405

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
           G++     +P    YN VI   CK G++ EA  +  EME     P   +F +++ G   +
Sbjct: 406 GQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMK 465

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
           G + EA   F +MV  G   +P   T+ +LL+ LL+A    MAK+ +
Sbjct: 466 GRMFEAVSIFHKMVAIG--CSPDKITVSSLLSCLLKAG---MAKEAY 507



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 204/458 (44%), Gaps = 59/458 (12%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEF------------VFGCLLDALCKNSSVKEA 228
           +  F S  +VKK    LD  P  G    EF             +  L  +LCK      A
Sbjct: 67  LNPFISFEVVKK----LDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLA 122

Query: 229 AKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++F+ M+ +   P+ R    L+  + ++GKL  A  +L+Q  +   E   +V N+LL+ 
Sbjct: 123 GQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEV--EGCCMVVNSLLNT 180

Query: 288 YAQMGKMTDAFELLKE-MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
             ++ ++ DA +L  E +R + C+ +  ++ +LI+ LC + K E+A      M   GCE 
Sbjct: 181 LVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEP 239

Query: 347 DVVTYTTLISGFCKSRKIDRCYE------------------------------------I 370
           D+VTY TLI GFCKS ++++  E                                    +
Sbjct: 240 DIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSL 299

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M++ GI P  +T+  ++  + K  E+    E+ G+M   GC PDV  +  +I   C+
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCR 359

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G++ +   +W EM A  + P   ++ ++++    +  L++A E   ++  + ++  PQ 
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII--PQP 417

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                +++   +A KV  A  +   +  K C+ +   +TI I      G + EA S    
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHK 477

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           M+     P   T + L+  L K    + A  + +  RK
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARK 515



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I    K  K      ++EEM K+K  P  IT  + +I        RM + A+ + 
Sbjct: 419 MYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILII--GHCMKGRMFE-AVSIF 475

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
            +M   GC PD+     LL  L K    KEA  L
Sbjct: 476 HKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 206/421 (48%), Gaps = 17/421 (4%)

Query: 71  SHDVEKIFRILKKFHSRLPK-LELALQHSGVVLRPGLTERVINRC--GDAG-NLGYRYYM 126
           + DV K++ IL    S  P+ L+ +L+ + + L   L ++V+ R   G A  N    ++ 
Sbjct: 25  NDDVHKVYTILTTTSS--PETLKQSLKSTQIFLSNELIDQVLKRVRFGHANPNQTLEFFR 82

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           +  ++  + H+      ++  L + R F  VW L+ E R++   +IT    ++++ R A 
Sbjct: 83  YTGRRKGFYHTAYSLDTMLYILGRSRMFDHVWELLIEARRKDQNVITPRTVMVVLGRVAK 142

Query: 187 ARMVKKAIEVLDE----MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242
              V++ +E   +    +P YG       F  LL  LC+  S+ +A  ++  ++  F+P+
Sbjct: 143 VCSVRQTVETFRKFKKIVPDYGVN----CFNALLRTLCQEKSMTDARNVYHSLKHNFRPN 198

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L+ F  LL GW     + +A+  + +MK+ G EPD+V YN+L+  Y +  ++  A+++  
Sbjct: 199 LQTFNILLSGW---KNVEDAELFVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFD 255

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           EMR K   P+  +YT +I  L  + + ++A     EM+  G   DV  Y   I  +C ++
Sbjct: 256 EMREKDLSPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYCIAK 315

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           ++   +E++D M+ +G+ PN  TY           +L+    L   M   GC+P   +  
Sbjct: 316 RLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCLPYTQSCM 375

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +IRL  +  +++ A+ +W EM        T    V+       G L+EA + F EM+ +
Sbjct: 376 FLIRLFKRHEKMEMALQLWGEMVEKGFGSYTLVSDVLFDMLCDMGKLMEAEKCFLEMIEK 435

Query: 483 G 483
           G
Sbjct: 436 G 436



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 149/317 (47%), Gaps = 11/317 (3%)

Query: 276 PDIVV--YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           PD  V  +N LL    Q   MTDA  +   ++     PN  ++ +L+      + +E+A 
Sbjct: 161 PDYGVNCFNALLRTLCQEKSMTDARNVYHSLKH-NFRPNLQTFNILLSG---WKNVEDAE 216

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               EM+  G E DVVTY +L+  +CK R+I++ Y++ D M ++ + P+ +TY  ++   
Sbjct: 217 LFVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDLSPDVITYTSVIGGL 276

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
               + ++  +++ EM++ G  PDV  YN  IR  C    L  A  + +EM    LSP  
Sbjct: 277 GLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNA 336

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++ +    F     L  +   +K M+G G L  P   +   L+    R +K+EMA  +W
Sbjct: 337 TTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCL--PYTQSCMFLIRLFKRHEKMEMALQLW 394

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             +V KG         +    L   G + EA    L+M++    P   +F ++ + L +L
Sbjct: 395 GEMVEKGFGSYTLVSDVLFDMLCDMGKLMEAEKCFLEMIEKGQRPSNVSFKRI-KVLMEL 453

Query: 574 YNRQIAAEITEKVRKMA 590
            N+  A  I    +KMA
Sbjct: 454 ANKHEA--IQNLTQKMA 468


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 195/396 (49%), Gaps = 18/396 (4%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L+  L ++ +  +   L  EM+   P L T+    IL+R F    M  +AIE   EM   
Sbjct: 66  LLLGLCEIGQMSSALKLFREMQA-GPFLPTSASHNILLRGF---FMAGRAIEFFKEMKAS 121

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           G EPD   +  LL AL  +  + EA  LF  M     P +  +  L+ G+CK G+  EA+
Sbjct: 122 GVEPDLESYHILLSALSDSGRMAEAHALFSAMT--CSPDIMTYNVLMDGYCKIGQTYEAQ 179

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            ++ ++  AG+EP++  Y+ +++ Y ++ K+ +A+E+  +M    C PNA ++  LI   
Sbjct: 180 SLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGF 239

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR-KIDRCYEILDSMIQRGILPN 382
           C+   +E+A + F EME+ GC+A +VTY TLI   CK R  +    ++ + +   G+ P 
Sbjct: 240 CKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPT 299

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++      E   + + L+  M   GC PDV  YN +I   C    +++A  ++N
Sbjct: 300 IVTYNSLIQGFS--ERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFN 357

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M  A   P   +F  ++ G   Q  + EA    + ++ R  ++AP   T   ++ +  +
Sbjct: 358 GMACA---PNVTTFNFLIRGLCAQKKVEEA----RNILDR--MTAPDMTTFNTIILAFCK 408

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           A  +  A++V   ++  G   N Y      H + S+
Sbjct: 409 AGAMHDAREVMKDMLKHGFYPNTYTTYALAHGIQSS 444



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 198/416 (47%), Gaps = 19/416 (4%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
             + +L+R F     + +A+ V  +M   G  P+      LL  LC+   +  A KLF E
Sbjct: 26  HTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFRE 85

Query: 235 MRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M+   F P+      LL G+   G+ +E      +MK +G EPD+  Y+ LLS  +  G+
Sbjct: 86  MQAGPFLPTSASHNILLRGFFMAGRAIE---FFKEMKASGVEPDLESYHILLSALSDSGR 142

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           M +A  L   M    C P+  +Y VL+   C++ +  EA     E+ ++G E +V TY+ 
Sbjct: 143 MAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSI 199

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I+ +CK  K++  +E+   MI+   +PN +T+  ++    K   LE+ ++L  EM KIG
Sbjct: 200 IINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIG 259

Query: 414 CVPDVSNYNVVIRLAC-KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           C   +  YN +I   C K G +  AV+++N++E A L+P   ++  ++ GF  +    + 
Sbjct: 260 CKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERA--NDG 317

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                 M   G    P   T   L++ L  A +VE A+ +++ +    C  NV  +   I
Sbjct: 318 LRLLCHMHAEG--CKPDVITYNCLISGLCSANRVEDAQRLFNGM---ACAPNVTTFNFLI 372

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             L +   V+EA     +++D    P   TF  ++    K      A E+ + + K
Sbjct: 373 RGLCAQKKVEEA----RNILDRMTAPDMTTFNTIILAFCKAGAMHDAREVMKDMLK 424



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 130/317 (41%), Gaps = 40/317 (12%)

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           K   A  L KE+      PNA++Y VLI+  C+  +M +A   F +M+ SG   +  T  
Sbjct: 5   KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMN 64

Query: 353 TLISGFCKSRKID--------------------------------RCYEILDSMIQRGIL 380
           TL+ G C+  ++                                 R  E    M   G+ 
Sbjct: 65  TLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVE 124

Query: 381 PNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           P+  +Y HI+L A      + E   L   M    C PD+  YNV++   CK+G+  EA +
Sbjct: 125 PDLESY-HILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQS 180

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  E+  A   P   ++ ++++ +     + EA E F +M+    +  P   T   L+  
Sbjct: 181 LMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCV--PNAVTFNTLIAG 238

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHVKEACSYCLDMMDADVMP 558
             +A  +E A  +++ +   GC+  +  +   I SL    G V  A      +  A + P
Sbjct: 239 FCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTP 298

Query: 559 QPDTFAKLMRGLKKLYN 575
              T+  L++G  +  N
Sbjct: 299 TIVTYNSLIQGFSERAN 315



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 33/265 (12%)

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           +RK D+   +   ++     PN  TY  ++    K  ++ + V +  +M+  G +P+ S 
Sbjct: 3   ARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 62

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
            N ++   C++G++  A+ ++ EM+A    P + S  +++ GF   G    A E+FKEM 
Sbjct: 63  MNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAG---RAIEFFKEMK 119

Query: 481 GRG----------LLSA--------------------PQYGTLKALLNSLLRAQKVEMAK 510
             G          LLSA                    P   T   L++   +  +   A+
Sbjct: 120 ASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQ 179

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +   I+  G E NV+ ++I I+       V+EA    + M++++ +P   TF  L+ G 
Sbjct: 180 SLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGF 239

Query: 571 KKLYNRQIAAEITEKVRKMAAERQI 595
            K    + A ++  ++ K+  +  I
Sbjct: 240 CKAGMLEDAIKLFAEMEKIGCKATI 264


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 223/489 (45%), Gaps = 44/489 (8%)

Query: 110 VINRCGDAGN--LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
           V+N+  +  N  L   ++   +   ++ H+   Y  +IK L   R    +  L++ M+ E
Sbjct: 43  VLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLE 102

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
                  ++FVI++  +  A + ++A++    + ++GC+P   ++  +LDAL   +  + 
Sbjct: 103 GIS-CNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQM 161

Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
              +++                                   MK  G E ++  YN LL  
Sbjct: 162 INGIYN----------------------------------NMKRDGIELNVYTYNMLLKA 187

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             +  ++  A +LL EM  KGC P+A SYT ++ ++CR+ K+EEA    + ++     + 
Sbjct: 188 LCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIK-----SF 242

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V  Y  LI+GFC+  K++  +E+ + M   GI P+ +TY  ++    +   +E  + ++ 
Sbjct: 243 VPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLA 302

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M   GC P+V  +  +++     G L EA+++WN M      P T ++  ++HG    G
Sbjct: 303 KMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYG 362

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            ++EA    ++M   G+   P   T   L++   +A  +  A ++W+ ++T GC  NV  
Sbjct: 363 KMVEAVSVSQKMERNGVF--PNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVV 420

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +T  +  L  N     A     +M + +  P   TF   ++GL      + A ++  ++R
Sbjct: 421 YTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMR 480

Query: 588 KMAAERQIT 596
           +      +T
Sbjct: 481 QYGCAPNVT 489



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 182/406 (44%), Gaps = 8/406 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY ALI    +  K   V+ L  EM  E   P +IT    +  +    +  M   A+ VL
Sbjct: 245 VYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEM---ALAVL 301

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            +M   GC P+   F  L+        + EA  L++ M +E  +P+   + +L++G C  
Sbjct: 302 AKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSY 361

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK+VEA  V  +M+  G  P+   Y+ L+ G+A+ G +  A E+  +M   GC PN   Y
Sbjct: 362 GKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVY 421

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T ++  LCR      A      M    C  + +T+ T I G C S K +   ++L+ M Q
Sbjct: 422 TCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQ 481

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G  PN  TY  ++      +   E ++++GE+ ++    ++  YN ++   C  G  K 
Sbjct: 482 YGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKG 541

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ +  ++      P + ++  +++ +  QG +  A +    +  +G    P   T  +L
Sbjct: 542 ALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKG-EGYPDVFTYTSL 600

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHV 541
           L  +     V+ A      ++ +G   N   W   +  LFS  GH+
Sbjct: 601 LWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGLFSKLGHL 646



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/452 (22%), Positives = 202/452 (44%), Gaps = 7/452 (1%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S  +Y  ++ +L    KF  +  +   M+++  +L     + +L++       V  A ++
Sbjct: 142 SVKIYNHVLDALLSENKFQMINGIYNNMKRDGIEL-NVYTYNMLLKALCKNDRVDAARKL 200

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
           L EM   GC PD   +  ++ ++C+   V+EA     E+  R K  +  + +L+ G+C+E
Sbjct: 201 LAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAR----ELSMRIKSFVPVYNALINGFCRE 256

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            K+ E   +  +M   G +PD++ Y+ +++  ++MG +  A  +L +M  +GC PN +++
Sbjct: 257 HKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTF 316

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T L++      ++ EA   +  M + G E + V Y TLI G C   K+     +   M +
Sbjct: 317 TSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMER 376

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ PN+ TY  ++    K  +L    E+  +M   GC+P+V  Y  ++ + C+      
Sbjct: 377 NGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNH 436

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+++   M   +  P T +F   + G    G    A +   +M   G   AP   T   +
Sbjct: 437 ALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYG--CAPNVTTYNEV 494

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           L+ L  A++   A  +   I     + N+  +   +      G  K A      ++    
Sbjct: 495 LDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGT 554

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            P   T+  ++    K    + A ++ +++ K
Sbjct: 555 KPDSITYNTVIYAYCKQGEVKTAIQLVDRLTK 586


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 208/426 (48%), Gaps = 8/426 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+  ++KM ++  V +L E+M+     P L T     I+M     +    +A   L 
Sbjct: 86  FTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN---IVMHCVCLSSQPCRASCFLG 142

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K G EPD   F  LL+  C  + +++A  LFD++    FKP++  +T+L+   CK  
Sbjct: 143 KMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNR 202

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A  +  QM   G  P++V YN L++G  ++G+  DA  LL++M ++  +PN  ++T
Sbjct: 203 HLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFT 262

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI A  ++ K+ EA   +  M +     DV TY +LI+G C    +D   ++   M + 
Sbjct: 263 ALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERN 322

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN++ Y  ++    K + +E+ +++  EM + G V +   Y V+I+  C +G    A
Sbjct: 323 GCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVA 382

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             V+N+M +    P   ++ V++ G    G + +A   F+ M  R +       T   ++
Sbjct: 383 QEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM--DINIVTYTIII 440

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             + +  KVE A D++  + +KG + NV  +T  I      G + EA S    M +   +
Sbjct: 441 QGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFL 500

Query: 558 PQPDTF 563
           P    +
Sbjct: 501 PNESVY 506



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 195/438 (44%), Gaps = 4/438 (0%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           ++ ++  YR ++++     +F     L   M   +P L +   F  L+   A        
Sbjct: 44  WIRAFSSYRKILRNGLHNLQFNDALDLFTRMVHSRP-LPSIIDFTRLLSVIAKMNRYDVV 102

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYG 252
           I + ++M   G  P       ++  +C +S    A+    +M +  F+P L  FTSLL G
Sbjct: 103 ISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNG 162

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +C   ++ +A  +  Q+   GF+P++V Y  L+    +   +  A EL  +M   G  PN
Sbjct: 163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y  L+  LC + +  +A     +M +   E +V+T+T LI  F K  K+    E+ +
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MIQ  + P+  TY  ++        L+E  ++   M + GC P+   Y  +I   CK  
Sbjct: 283 VMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSK 342

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +++ + ++ EM    +   T ++ V++ G+   G    A E F +M  R   + P   T
Sbjct: 343 RVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRR--APPDIRT 400

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              LL+ L    KVE A  ++  +  +  ++N+  +TI I  +   G V++A      + 
Sbjct: 401 YNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLF 460

Query: 553 DADVMPQPDTFAKLMRGL 570
              + P   T+  ++ G 
Sbjct: 461 SKGMKPNVITYTTMISGF 478



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 153/296 (51%), Gaps = 10/296 (3%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFG-AVWALMEEM-RKEKPQLITTEVFVILMRRFAS 186
             +PN V     Y AL+  L ++ ++G A W L + M R+ +P +IT   F  L+  F  
Sbjct: 218 GSRPNVV----TYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVIT---FTALIDAFVK 270

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRH 245
              + +A E+ + M +    PD F +G L++ LC    + EA ++F  M R    P+   
Sbjct: 271 VGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVI 330

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T+L++G+CK  ++ +   +  +M   G   + + Y  L+ GY  +G+   A E+  +M 
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +   P+  +Y VL+  LC   K+E+A   F  M +   + ++VTYT +I G CK  K++
Sbjct: 391 SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
             +++  S+  +G+ PN +TY  ++    ++  + E   L  +M++ G +P+ S Y
Sbjct: 451 DAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 158/343 (46%), Gaps = 11/343 (3%)

Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKP 169
           NR  DA  L +   +    +PN V     Y  LI+ L K R       L  +M     +P
Sbjct: 167 NRIEDAIAL-FDQILGMGFKPNVV----TYTTLIRCLCKNRHLNHAVELFNQMGTNGSRP 221

Query: 170 QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            ++T    V  +           A  +L +M K   EP+   F  L+DA  K   + EA 
Sbjct: 222 NVVTYNALVTGLCEIGRW---GDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278

Query: 230 KLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +L++ M +    P +  + SL+ G C  G L EA+ +   M+  G  P+ V+Y  L+ G+
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +  ++ D  ++  EM +KG   N  +YTVLIQ  C + + + A   F +M       D+
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDI 398

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TY  L+ G C + K+++   I + M +R +  N +TY  I+    K  ++E+  +L   
Sbjct: 399 RTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCS 458

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           +   G  P+V  Y  +I   C+ G + EA +++ +M+     P
Sbjct: 459 LFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLP 501



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 146/320 (45%), Gaps = 2/320 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I+ +  LLS  A+M +      L ++M+  G  P   +  +++  +C   +   A+  
Sbjct: 81  PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             +M + G E D+VT+T+L++G+C   +I+    + D ++  G  PN +TY  ++    K
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              L   VEL  +M   G  P+V  YN ++   C++G   +A  +  +M    + P   +
Sbjct: 201 NRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVIT 260

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           F  ++  F+  G L+EA E +  M+   +   P   T  +L+N L     ++ A+ ++  
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQMSVY--PDVFTYGSLINGLCMYGLLDEARQMFYL 318

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +   GC  N   +T  IH    +  V++      +M    V+    T+  L++G   +  
Sbjct: 319 MERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGR 378

Query: 576 RQIAAEITEKVRKMAAERQI 595
             +A E+  ++    A   I
Sbjct: 379 PDVAQEVFNQMSSRRAPPDI 398


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 172/347 (49%), Gaps = 6/347 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+ +L K  +     +  + M  R   P + T   + +LM  F     +  A+ + 
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPT---YNLLMDAFRKVGQLDMALGLF 193

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
            EM + G +P    +  LLDALC    V  A KLF +M  +   P    +++L+ G  K 
Sbjct: 194 AEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKS 253

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ EA  V  +M D G   D+V YN+LL+  A+ G M   ++L+KEM RKG  P+A S+
Sbjct: 254 GRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSF 313

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             ++ AL +  K + A   F  M  SGC+ D+++Y  LI  + +     +  ++L+ M++
Sbjct: 314 NTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVE 373

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G +P   TY  ++       +++E   ++ EM   GC PDV  YN ++ +  K GE + 
Sbjct: 374 AGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQR 433

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           A  ++ +M+   + P T S+ V + G      L EA   FK+M   G
Sbjct: 434 AARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG 480



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 215/478 (44%), Gaps = 48/478 (10%)

Query: 99  GVVLRPGLTERVI------NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR 152
           G  LRP    ++I      N+ GDA +L  +   +A      VH++     LI  L    
Sbjct: 25  GRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPT--VHAF---TKLIDILVNSG 79

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212
           +F     + +++ ++  QL     + +L+R F  +  +  A+E+  EM   G EPDE+ +
Sbjct: 80  EFERAELVYKKLVQKGCQL-DRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTY 138

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           G L++AL K   V+EA   FD M ER                                  
Sbjct: 139 GFLVNALGKAGRVQEARSFFDAMLER---------------------------------- 164

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G  P+I  YN L+  + ++G++  A  L  EM+R+G  P+  +Y +L+ ALC   ++  A
Sbjct: 165 GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAA 224

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            + F +M   GC  D  TY+TL++G  KS +++  +++   M+ RG+  + + Y  ++  
Sbjct: 225 RKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLAT 284

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K   ++   +LM EM + G  PD  ++N ++    K  +   A  V+  M  +   P 
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPD 344

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             S+ +++  +   G   +A +  +EMV  G +  P+  T  +L++ L    +V+ A  V
Sbjct: 345 LISYNILIDSYARFGDAAQARQMLEEMVEAGFI--PETKTYNSLIHWLATDGQVDEAFAV 402

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              + T GC  +V  +   +  L   G  + A      M D  V P   ++A  + GL
Sbjct: 403 LEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGL 460



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 162/363 (44%), Gaps = 42/363 (11%)

Query: 110 VINRCGDAGNLG-YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE- 167
           ++N  G AG +   R +  A  +     +   Y  L+ +  K+ +      L  EM++  
Sbjct: 141 LVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRG 200

Query: 168 -KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
            +P ++T   + IL+    SA  V  A ++  +M   GC PD + +  L++ L K+  V+
Sbjct: 201 FQPSVVT---YNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVE 257

Query: 227 EAAKLFDEMRER------------------------------------FKPSLRHFTSLL 250
           EA K+F EM +R                                    F P    F +++
Sbjct: 258 EAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIM 317

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
               K  K   A+ V  +M ++G +PD++ YN L+  YA+ G    A ++L+EM   G  
Sbjct: 318 DALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFI 377

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P   +Y  LI  L    +++EA     EME +GC  DVVTY  L+    K  +  R   +
Sbjct: 378 PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARL 437

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M  +G+ P+ L+Y   +      + L+E + L  +M+ +GC  D + Y ++IR A +
Sbjct: 438 FQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHR 497

Query: 431 LGE 433
            G+
Sbjct: 498 AGD 500



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 141/307 (45%), Gaps = 4/307 (1%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P+ +V   L++ Y +  K  DAF+L  +     C P  +++T LI  L    + E A   
Sbjct: 30  PNTLV--KLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELV 87

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           + ++ + GC+ D   Y  LI  F +S ++D   E+   M  +G  P++ TY  ++ A  K
Sbjct: 88  YKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGK 147

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              ++E       M + G  P++  YN+++    K+G+L  A+ ++ EM+     P   +
Sbjct: 148 AGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVT 207

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           + +++      G +  A + F +M G G   +P   T   L+N L ++ +VE A  V+  
Sbjct: 208 YNILLDALCSAGRVGAARKLFHKMTGDG--CSPDSYTYSTLVNGLGKSGRVEEAHKVFRE 265

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +V +G  +++  +   + +L   G++        +M      P   +F  +M  L K   
Sbjct: 266 MVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANK 325

Query: 576 RQIAAEI 582
              A E+
Sbjct: 326 PDAAREV 332



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 149/374 (39%), Gaps = 103/374 (27%)

Query: 300 LLKEMRRKG-----------------------------------CDPNANSYTVLIQALC 324
           LLKEM  +G                                   C P  +++T LI  L 
Sbjct: 17  LLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV 76

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI-------------- 370
              + E A   + ++ + GC+ D   Y  LI  F +S ++D   E+              
Sbjct: 77  NSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEY 136

Query: 371 ---------------------LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
                                 D+M++RG+ PN  TY  +M A  K  +L+  + L  EM
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           ++ G  P V  YN+++   C  G +  A  ++++M     SP + ++  +V+G    G +
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256

Query: 470 IEACEYFKEMVGRG----------LLSA-----------------------PQYGTLKAL 496
            EA + F+EMV RG          LL+                        P   +   +
Sbjct: 257 EEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI 316

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +++L +A K + A++V++ +V  GC+ ++ ++ I I S    G   +A     +M++A  
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376

Query: 557 MPQPDTFAKLMRGL 570
           +P+  T+  L+  L
Sbjct: 377 IPETKTYNSLIHWL 390


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 230/494 (46%), Gaps = 29/494 (5%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           G +       +V+N   +A  +   + ++   K+   V     Y  ++ S  K       
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 158 WALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
                EMR+    P ++T   +  L+  +  A+ V  A E+ + M   GC P+   +  L
Sbjct: 538 RKWFNEMREVGCTPNVVT---YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 216 LDALCKNSSVKEAAKLFDEM-----------------RERFKPSLRHFTSLLYGWCKEGK 258
           +D  CK   V++A ++F+ M                     +P++  + +LL G+CK  +
Sbjct: 595 IDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHR 654

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA+ +L  M   G EP+ +VY+ L+ G  ++GK+ +A E+  EM   G      +Y+ 
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI    ++++ + A++   +M  + C  +VV YT +I G CK  K D  Y+++  M ++G
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN +TY  ++       ++E C+EL+  M   G  P+   Y V+I   CK G L  A 
Sbjct: 775 CQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAH 834

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           N+  EM+       T  +  ++ GF  +   IE+     E +G+   +AP     + L++
Sbjct: 835 NLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDE-IGQD-DTAPFLSVYRLLID 890

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI--WIHSLFSNGHVKEACSYCLDMMDADV 556
           +L++AQ++EMA  +   + T    L  Y+ T    I SL     V+ A     +M    V
Sbjct: 891 NLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGV 950

Query: 557 MPQPDTFAKLMRGL 570
           +P+  +F  L++GL
Sbjct: 951 IPEMQSFCSLIKGL 964



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 202/433 (46%), Gaps = 30/433 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V     Y ALI +  K +K      L E M  E   P ++T   +  L+     A  
Sbjct: 551 PNVV----TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT---YSALIDGHCKAGQ 603

Query: 190 VKKAIEVLDEM------PKYGC----------EPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           V+KA ++ + M      P               P+   +G LLD  CK+  V+EA KL D
Sbjct: 604 VEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD 663

Query: 234 EMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
            M  E  +P+   + +L+ G CK GKL EA+ V  +M + GF   +  Y++L+  Y ++ 
Sbjct: 664 AMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVK 723

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +   A ++L +M    C PN   YT +I  LC++ K +EA +    ME  GC+ +VVTYT
Sbjct: 724 RQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYT 783

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRK 411
            +I GF    KI+ C E+L+ M  +G+ PN +TY  +++ H  K   L+    L+ EM++
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY-RVLIDHCCKNGALDVAHNLLEEMKQ 842

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
                  + Y  VI    K  E  E++ + +E+     +P    + +++   +    L  
Sbjct: 843 THWPTHTAGYRKVIEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEM 900

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A    +E+            T  +L+ SL  A KVE A  ++S +  KG    + ++   
Sbjct: 901 ALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSL 960

Query: 532 IHSLFSNGHVKEA 544
           I  LF N  + EA
Sbjct: 961 IKGLFRNSKISEA 973



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 32/454 (7%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS------VK 226
           + ++F  L+  + ++     A ++L +M K G  P   V+  L+ ++C +        + 
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLD 430

Query: 227 EAAKLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            A K + EM        K ++  FT  L   C  GK  +A  V+ +M   GF PD   Y+
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYS 487

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L+      KM  AF L +EM+R G   +  +YT+++ + C+   +E+A + F EM   
Sbjct: 488 KVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV 547

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  +VVTYT LI  + K++K+    E+ ++M+  G LPN +TY  ++  H K  ++E+ 
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607

Query: 403 VELMGEMRKIGCVPDVSNY-----------NVVIRLA-----CKLGELKEAVNVWNEMEA 446
            ++   M     VPDV  Y           NVV   A     CK   ++EA  + + M  
Sbjct: 608 CQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSM 667

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
               P    +  ++ G    G L EA E   EM   G   A  Y T  +L++   + ++ 
Sbjct: 668 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG-FPATLY-TYSSLIDRYFKVKRQ 725

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           ++A  V S ++   C  NV  +T  I  L   G   EA      M +    P   T+  +
Sbjct: 726 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAM 785

Query: 567 MRGLKKLYNRQIAAEITEKV-RKMAAERQITFKM 599
           + G   +   +   E+ E++  K  A   +T+++
Sbjct: 786 IDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 207/489 (42%), Gaps = 58/489 (11%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           +++WA +Q  Y H+  VY AL+  + +          ++++R +  ++   E   +L+R+
Sbjct: 151 FFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVF-GEFLNVLVRK 209

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR------E 237
                    A+E L  +  +   P    + CL+ A  K   +  A+ +  EM       +
Sbjct: 210 HCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD 269

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            F  +LR F    Y  CK GK  EA   L  ++   F PD V Y  L+SG  +     +A
Sbjct: 270 GF--TLRCFA---YSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASLFEEA 321

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            + L  MR   C PN  +Y+ L+      +++    R    M   GC      + +L+  
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM----------------LAHEKKEEL-- 399
           +C S      Y++L  M++ G +P  + Y  ++                LA +   E+  
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLA 441

Query: 400 -----------------------EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
                                  E+   ++ EM   G +PD S Y+ V+   C   +++ 
Sbjct: 442 AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMEL 501

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++ EM+   L     ++ +MV  F   G + +A ++F EM  R +   P   T  AL
Sbjct: 502 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM--REVGCTPNVVTYTAL 559

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +++ L+A+KV  A +++  ++++GC  N+  ++  I      G V++AC     M  +  
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKD 619

Query: 557 MPQPDTFAK 565
           +P  D + K
Sbjct: 620 VPDVDMYFK 628



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 216/502 (43%), Gaps = 35/502 (6%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMW-----ASKQPNYVHSYDVYRALIKSLSKMRK 153
           G    P +   +++    +G+  Y Y +          P YV    VY  LI S+    K
Sbjct: 367 GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV----VYNILIGSICG-DK 421

Query: 154 FGAVWALMEEMRKEKPQLITTEVFV------ILMRRFASARMVKKAIEVLDEMPKYGCEP 207
                 L++   K   +++   V +         R   SA   +KA  V+ EM   G  P
Sbjct: 422 DSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIP 481

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D   +  +L+ LC  S ++ A  LF+EM R      +  +T ++  +CK G + +A+   
Sbjct: 482 DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWF 541

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M++ G  P++V Y  L+  Y +  K++ A EL + M  +GC PN  +Y+ LI   C+ 
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601

Query: 327 EKMEEANRAFVEM----------------ERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            ++E+A + F  M                + +    +VVTY  L+ GFCKS +++   ++
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKL 661

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD+M   G  PNQ+ Y  ++    K  +L+E  E+  EM + G    +  Y+ +I    K
Sbjct: 662 LDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFK 721

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +     A  V ++M   S +P    +  M+ G    G   EA +  + M  +G    P  
Sbjct: 722 VKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--CQPNV 779

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  A+++      K+E   ++   + +KG   N   + + I     NG +  A +   +
Sbjct: 780 VTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 839

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M           + K++ G  K
Sbjct: 840 MKQTHWPTHTAGYRKVIEGFNK 861



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 146/392 (37%), Gaps = 75/392 (19%)

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L Q++D   E      N L+  + + G  + A E L  ++     P+ ++Y  LIQA  +
Sbjct: 188 LQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLK 247

Query: 326 MEKMEEANRAFVEM--------------------------------ERSGCEADVVTYTT 353
            ++++ A+    EM                                E      D V YT 
Sbjct: 248 ADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTK 307

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LISG C++   +   + L+ M     LPN +TY  ++     K++L  C  ++  M   G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG------ 467
           C P    +N ++   C  G+   A  +  +M      PG   + +++    G        
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCD 427

Query: 468 -----------------------------CLIEACEY------FKEMVGRGLLSAPQYGT 492
                                        CL  A +Y       +EM+G+G +  P   T
Sbjct: 428 LLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI--PDTST 485

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              +LN L  A K+E+A  ++  +   G   +VY +TI + S    G +++A  +  +M 
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +    P   T+  L+    K      A E+ E
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 43/313 (13%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARM 189
           +PN +    VY ALI  L K+ K      +  EM +   P  + T  +  L+ R+   + 
Sbjct: 671 EPNQI----VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT--YSSLIDRYFKVKR 724

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
              A +VL +M +  C P+  ++  ++D LCK     EA KL   M E+  +P++  +T+
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK- 307
           ++ G+   GK+     +L +M   G  P+ V Y  L+    + G +  A  LL+EM++  
Sbjct: 785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTH 844

Query: 308 -----------------------------GCD---PNANSYTVLIQALCRMEKMEEANRA 335
                                        G D   P  + Y +LI  L + +++E A R 
Sbjct: 845 WPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRL 904

Query: 336 FVEMER-SGCEADVV-TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             E+   S    D   TY +LI   C + K++  +++   M ++G++P   ++  ++   
Sbjct: 905 LEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964

Query: 394 EKKEELEECVELM 406
            +  ++ E + L+
Sbjct: 965 FRNSKISEALLLL 977



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 121/249 (48%), Gaps = 14/249 (5%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           S  PN V    +Y  +I  L K+ K    + LM+ M ++  +P ++T   +  ++  F  
Sbjct: 739 SCAPNVV----IYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT---YTAMIDGFGM 791

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRH 245
              ++  +E+L+ M   G  P+   +  L+D  CKN ++  A  L +EM++   P+    
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +  ++ G+ KE   +E+  +L ++      P + VY  L+    +  ++  A  LL+E+ 
Sbjct: 852 YRKVIEGFNKE--FIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVA 909

Query: 306 RKGCD--PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
                    +++Y  LI++LC   K+E A + F EM + G   ++ ++ +LI G  ++ K
Sbjct: 910 TFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSK 969

Query: 364 IDRCYEILD 372
           I     +LD
Sbjct: 970 ISEALLLLD 978


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 215/467 (46%), Gaps = 45/467 (9%)

Query: 84  FHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRA 143
           F  R+P  +L   +    L P ++  V+ +  +  ++G+R++ ++  + N  HS+  Y  
Sbjct: 49  FVYRVPDSDLCFCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNL 108

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L +SL K         + E M+ +        +   L+  FA    +  A  +L  +  +
Sbjct: 109 LTRSLCKAGLHDLAGQMFECMKSDGVS-PNNRLLGFLVSSFAEKGKLHFATALL--LQSF 165

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEA 262
             E    V   LL+ L K   V++A KLFDE +R +     + F  L+ G C  GK  +A
Sbjct: 166 EVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKA 225

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-CDPNANSYTVLIQ 321
             +L  M   G EPDIV YN L+ G+ +  ++  A E+ K+++    C P+  +YT +I 
Sbjct: 226 LELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMIS 285

Query: 322 ALCRMEKMEEANRAFVEMER-----------------------------------SGCEA 346
             C+  KM EA+    +M R                                    GC  
Sbjct: 286 GYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFP 345

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DVVT+T+LI G+C+  ++ + + + + M  RG+ PN  TY  ++ A   +  L +  EL+
Sbjct: 346 DVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELL 405

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
           G++     +P    YN VI   CK G++ EA  +  EME     P   +F +++ G   +
Sbjct: 406 GQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMK 465

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
           G + EA   F +MV  G   +P   T+ +LL+ LL+A    MAK+ +
Sbjct: 466 GRMFEAVSIFHKMVAIG--CSPDKITVSSLLSCLLKAG---MAKEAY 507



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 204/458 (44%), Gaps = 59/458 (12%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEF------------VFGCLLDALCKNSSVKEA 228
           +  F S  +VKK    LD  P  G    EF             +  L  +LCK      A
Sbjct: 67  LNPFISFEVVKK----LDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLA 122

Query: 229 AKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++F+ M+ +   P+ R    L+  + ++GKL  A  +L+Q  +   E   +V N+LL+ 
Sbjct: 123 GQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEV--EGCCMVVNSLLNT 180

Query: 288 YAQMGKMTDAFELLKE-MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
             ++ ++ DA +L  E +R + C+ +  ++ +LI+ LC + K E+A      M   GCE 
Sbjct: 181 LVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEP 239

Query: 347 DVVTYTTLISGFCKSRKIDRCYE------------------------------------I 370
           D+VTY TLI GFCKS ++++  E                                    +
Sbjct: 240 DIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSL 299

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M++ GI P  +T+  ++  + K  E+    E+ G+M   GC PDV  +  +I   C+
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCR 359

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +G++ +   +W EM A  + P   ++ ++++    +  L++A E   ++  + ++  PQ 
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII--PQP 417

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                +++   +A KV  A  +   +  K C+ +   +TI I      G + EA S    
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHK 477

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           M+     P   T + L+  L K    + A  + +  RK
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARK 515



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I    K  K      ++EEM K+K  P  IT  + +I        RM + A+ + 
Sbjct: 419 MYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILII--GHCMKGRMFE-AVSIF 475

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
            +M   GC PD+     LL  L K    KEA  L
Sbjct: 476 HKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 194/391 (49%), Gaps = 2/391 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           L+ R   A    +++  L+ +   G +PD  +   L+     + ++K+A ++ + +    
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P +  + +++ G+ K  ++  A  V  +M+  GF PD+V YN ++      GK+  AFE
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           ++ E+ + GC P+  +YT+LI+A     ++ EA   F E+   G   D+ TY  +I G C
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K    DR  + +  +  RG  P+ ++Y  ++ +   K   E+   LM +M   GC P+V 
Sbjct: 248 KEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVV 307

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            ++++I   C+ G ++EAVNV   M+   L+P + S+  ++  F  +G L  A EY ++M
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V  G L  P       +L +L +    ++A DV+  +   GC   V A+     +L+S G
Sbjct: 368 VSDGCL--PDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCG 425

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +  +A     +M+   + P   T+  L+  L
Sbjct: 426 NKIKALEMISEMIRKGIDPDEITYNSLISCL 456



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 193/422 (45%), Gaps = 47/422 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I   SK  +  +   + + MR     P ++T   + I++    S   ++ A EV+D
Sbjct: 134 YNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVT---YNIMIGSLCSRGKLELAFEVMD 190

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           E+ K GC+P    +  L++A      + EA +LFDE+  R  +P L  + +++ G CKEG
Sbjct: 191 ELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEG 250

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A   +  +   G  PD+V YN LL  +    +  D   L+K+M   GC+PN  +++
Sbjct: 251 MEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHS 310

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI + CR  ++ EA      M+  G   D  +Y  LIS FCK  ++D   E L+ M+  
Sbjct: 311 ILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSD 370

Query: 378 GILPNQLTYLHIM----------LAHEKKEELEE-------------------------C 402
           G LP+ + Y  I+          LA +  E+L+E                          
Sbjct: 371 GCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKA 430

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           +E++ EM + G  PD   YN +I   C+ G + EA+ +  +MEA    P   SF +++ G
Sbjct: 431 LEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLG 490

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL----RAQKVEMAKDVWSCIVT 518
                 + E  E    MV +G L  P   +   L+  +     RA+ +E+A  ++   V 
Sbjct: 491 MCKAHRVFEGIELLITMVEKGCL--PNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVI 548

Query: 519 KG 520
            G
Sbjct: 549 SG 550



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 166/361 (45%), Gaps = 7/361 (1%)

Query: 234 EMRERFKPSLR----HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           E R+   P+L     H   LL   C+ GK  E+ Y L  +   GF+PD+V+   L+ G+ 
Sbjct: 49  EFRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFF 108

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
               +  A  +++ +   G DP+  SY  +I    +  +++ AN+ F  M   G   DVV
Sbjct: 109 NSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVV 167

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY  +I   C   K++  +E++D +++ G  P+ +TY  ++ A   +  + E +EL  E+
Sbjct: 168 TYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDEL 227

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  PD+  YN +IR  CK G    A++    + A   +P   S+ +++  FL +   
Sbjct: 228 VSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRW 287

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +     K+MV  G    P   T   L++S  R  +V  A +V   +  KG   + Y++ 
Sbjct: 288 EDGERLMKDMVLSG--CEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYD 345

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             I +    G +  A  Y   M+    +P    +  ++  L K     +A ++ EK+ ++
Sbjct: 346 PLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEV 405

Query: 590 A 590
            
Sbjct: 406 G 406



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 146/318 (45%), Gaps = 6/318 (1%)

Query: 141 YRALIKSLSK--MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I+ + K  M      +      R   P +++   + IL+R F +    +    ++ 
Sbjct: 239 YNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVS---YNILLRSFLNKSRWEDGERLMK 295

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   GCEP+      L+ + C+   V+EA  + + M+E+   P    +  L+  +CKEG
Sbjct: 296 DMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEG 355

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L  A   L +M   G  PDIV YN +L+   + G    A ++ +++   GC P   +Y 
Sbjct: 356 RLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYN 415

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +  AL       +A     EM R G + D +TY +LIS  C+   +D    +L  M   
Sbjct: 416 TMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEAT 475

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
              P  +++  ++L   K   + E +EL+  M + GC+P+ ++Y ++I      G   EA
Sbjct: 476 RFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEA 535

Query: 438 VNVWNEMEAASLSPGTDS 455
           + + N +    +  G  S
Sbjct: 536 MELANSLYRLGVISGDSS 553


>gi|125560868|gb|EAZ06316.1| hypothetical protein OsI_28549 [Oryza sativa Indica Group]
          Length = 326

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 7/292 (2%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKE-G 257
           M K+  E D+ VF  LL ALCKN ++++A +L   MR++F P +   F  +L GWC    
Sbjct: 1   MEKFKTEADQTVFYSLLRALCKNKNIEDAEELL-LMRKKFFPLTAEGFNIILDGWCNVIT 59

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EAK +  +M +    PD   Y  ++S +A++G + D   +  EM+++G  P+   Y 
Sbjct: 60  DIAEAKRIWREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYN 119

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  L +   M++A   F  +   G + +V TY ++I   C+SRK+D    +L+ M+ +
Sbjct: 120 SLIYVLTKENCMKDAQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLK 179

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI+P  LTY H  L   ++E ++E ++L+ +M+  GC P    + ++I    +L E   A
Sbjct: 180 GIVPTILTY-HTFL---RQENIDETLKLLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHA 235

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           + +WNEM+   + P    ++ +V G +  GC+  A EY+ EM   G  S P+
Sbjct: 236 LKLWNEMKRYDIRPSYSHYMSVVQGLIKHGCMERALEYYDEMKENGFASDPK 287



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 135/280 (48%), Gaps = 8/280 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM-VKKAIEVLD 198
           V+ +L+++L K +       L+   +K  P  +T E F I++  + +    + +A  +  
Sbjct: 12  VFYSLLRALCKNKNIEDAEELLLMRKKFFP--LTAEGFNIILDGWCNVITDIAEAKRIWR 69

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM  Y   PD   +  ++    K  ++ +  +++DEM++R + PS+  + SL+Y   KE 
Sbjct: 70  EMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKEN 129

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A+ +  ++ D G +P++  YN+++    +  K+ +A  +L++M  KG  P   +Y 
Sbjct: 130 CMKDAQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTILTYH 189

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
             +    R E ++E  +   +M+  GC     T+  LI  F +  +     ++ + M + 
Sbjct: 190 TFL----RQENIDETLKLLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRY 245

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            I P+   Y+ ++    K   +E  +E   EM++ G   D
Sbjct: 246 DIRPSYSHYMSVVQGLIKHGCMERALEYYDEMKENGFASD 285



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 4/188 (2%)

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK-LGELKEAVNV 440
           +Q  +  ++ A  K + +E+  EL+  MRK         +N+++   C  + ++ EA  +
Sbjct: 9   DQTVFYSLLRALCKNKNIEDAEELL-LMRKKFFPLTAEGFNIILDGWCNVITDIAEAKRI 67

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
           W EM    ++P   S+ +MV  F   G L +    + EM  RG    P      +L+  L
Sbjct: 68  WREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGW--TPSIAVYNSLIYVL 125

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +   ++ A+++++ I+ +G + NV  +   I  L  +  + EA     DMM   ++P  
Sbjct: 126 TKENCMKDAQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTI 185

Query: 561 DTFAKLMR 568
            T+   +R
Sbjct: 186 LTYHTFLR 193


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 202/420 (48%), Gaps = 10/420 (2%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL++   +A  +K A ++ DEM      PD   +G ++   C  S ++ A KL  EM 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R  + +   +TS++   C EG++ +A  V+  M   G   D  V+  ++SG+ + G + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A     EM+++G   +  +YT LI  LCR  +++EA R   EME  G + D VTYT LI
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G+CK  K+   + + + M+Q+ + PN +TY  +     K+ ++    EL+ EM   G  
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            ++  YN +I   CK G L++A+    +M+ A L P   ++  ++        L  A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +EM+ +G+   P   T   L+N    + +VE  K +   ++ K    N   +   +   
Sbjct: 553 LQEMLDKGI--KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA----AEITEKVRKMAA 591
               ++K        M+  +V+P  +T+  L++G  K  N + A    +E+ EK  ++ A
Sbjct: 611 CIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTA 670



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 200/414 (48%), Gaps = 13/414 (3%)

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           ++   VF  +M  F     +  A    DEM K G   D   +  L++ LC+   +KEA +
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +  EM ++        +T L+ G+CK GK+ EA  V  +M      P++V Y  L  G  
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G +  A ELL EM  KG + N  +Y  LI  LC+   +E+A R  ++M+ +G + DV 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TYTT+I   C+S+++DR + +L  M+ +GI P  +TY  +M        +E    L+  M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            +    P+ + YN +++  C    +K    ++  M +  + P  +++ +++ G      +
Sbjct: 592 LEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNM 651

Query: 470 IEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
            EA  +  EM+ +G  L+A  Y  L  LLN   + +K   A+ ++  +  +        +
Sbjct: 652 KEALYFHSEMIEKGFRLTASSYNALIRLLN---KKKKFTEARRLFEKMRKERLTAEPDVY 708

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQPDTFAK----LMRGLKKLY 574
             +I   F+  +++   + C ++++      +    D FA+    +MR L++++
Sbjct: 709 NFYIDLSFNEDNLESTLALCDELVEVTLVKSIADTDDDFAEEHISIMRFLEEMW 762


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 166/319 (52%), Gaps = 5/319 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP LI    F  L+        +K+A E+L+EM K G +P+ +    L+D LCK    ++
Sbjct: 298 KPNLIN---FTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEK 354

Query: 228 AAKLFDEM--RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A +LF ++   + +KP++  +TS+++G+CKE KL  A+ +L +MK+ G  P+   Y  L+
Sbjct: 355 AFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLI 414

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+++ G    A+EL+  M ++G   N  +Y   I +LC+  +  EA +   +  R G +
Sbjct: 415 DGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQ 474

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
           AD VTYT LIS  C+             M + G+ P+  TY  ++ A  ++  +EE  +L
Sbjct: 475 ADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKL 534

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             E   +G VP    Y  +I   C+   +  A+  +N M     +P + ++  ++ G   
Sbjct: 535 FAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCK 594

Query: 466 QGCLIEACEYFKEMVGRGL 484
           +  L EAC+ ++ MV +GL
Sbjct: 595 ESKLDEACQLYEAMVDKGL 613



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/513 (23%), Positives = 227/513 (44%), Gaps = 53/513 (10%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           N+  +++V   +++  +++ KF     ++ EM      ++T      +        +V  
Sbjct: 156 NFERAHEVMDCMVRVFAEIGKFQEAVNMVIEMENHG-LVLTVRTLNCVTGVAGEMGLVGY 214

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK-LFDEMRERFKPSLRHFTSLLY 251
           A  V DEM   G  PD   +  +  A C+   + +  + L D +R  F       T ++ 
Sbjct: 215 AENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMIS 274

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +C++G      +   +  + G +P+++ + +L++G  + G +  AFE+L+EM +KG  P
Sbjct: 275 TFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKP 334

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEI 370
           N  ++T LI  LC+    E+A R F+++ RS   + +V TYT++I G+CK  K++R   +
Sbjct: 335 NVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEML 394

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L  M ++G++PN  TY  ++  H K    E+  ELM  M K G   ++  YN  I   CK
Sbjct: 395 LSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCK 454

Query: 431 LG-----------------------------------ELKEAVNVWNEMEAASLSPGTDS 455
            G                                   + +EA+  +++M  A + P   +
Sbjct: 455 KGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHT 514

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++  F  Q  + E+ + F E VG GL+  P   T  +++    R + V +A   ++ 
Sbjct: 515 YNTLIAAFSRQRRMEESEKLFAEAVGLGLV--PTKETYTSMICGYCRDRNVSLALKFFNR 572

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-------------QPDT 562
           +   GC  +   +   I  L     + EAC     M+D  + P             + D 
Sbjct: 573 MSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDD 632

Query: 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            A  M  L++L  +     +   +RK+ +ER++
Sbjct: 633 SATAMVILERLDKKLWIRTVNTLIRKLCSERKV 665


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 202/420 (48%), Gaps = 10/420 (2%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL++   +A  +K A ++ DEM      PD   +G ++   C  S ++ A KL  EM 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R  + +   +TS++   C EG++ +A  V+  M   G   D  V+  ++SG+ + G + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A     EM+++G   +  +YT LI  LCR  +++EA R   EME  G + D VTYT LI
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G+CK  K+   + + + M+Q+ + PN +TY  +     K+ ++    EL+ EM   G  
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            ++  YN +I   CK G L++A+    +M+ A L P   ++  ++        L  A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +EM+ +G+   P   T   L+N    + +VE  K +   ++ K    N   +   +   
Sbjct: 553 LQEMLDKGI--KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA----AEITEKVRKMAA 591
               ++K        M+  +V+P  +T+  L++G  K  N + A    +E+ EK  ++ A
Sbjct: 611 CIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTA 670



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 164/330 (49%), Gaps = 2/330 (0%)

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           ++   VF  +M  F     +  A    DEM K G   D   +  L++ LC+   +KEA +
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +  EM ++        +T L+ G+CK GK+ EA  V  +M      P++V Y  L  G  
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G +  A ELL EM  KG + N  +Y  LI  LC+   +E+A R  ++M+ +G + DV 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TYTT+I   C+S+++DR + +L  M+ +GI P  +TY  +M        +E    L+  M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            +    P+ + YN +++  C    +K    ++  M +  + P  +++ +++ G      +
Sbjct: 592 LEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNM 651

Query: 470 IEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
            EA  +  EM+ +G  L+A  Y  L  LLN
Sbjct: 652 KEALYFHSEMIEKGFRLTASSYNALIRLLN 681


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 202/420 (48%), Gaps = 10/420 (2%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + IL++   +A  +K A ++ DEM      PD   +G ++   C  S ++ A KL  EM 
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            R  + +   +TS++   C EG++ +A  V+  M   G   D  V+  ++SG+ + G + 
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A     EM+++G   +  +YT LI  LCR  +++EA R   EME  G + D VTYT LI
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G+CK  K+   + + + M+Q+ + PN +TY  +     K+ ++    EL+ EM   G  
Sbjct: 433 DGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE 492

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            ++  YN +I   CK G L++A+    +M+ A L P   ++  ++        L  A   
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            +EM+ +G+   P   T   L+N    + +VE  K +   ++ K    N   +   +   
Sbjct: 553 LQEMLDKGI--KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA----AEITEKVRKMAA 591
               ++K        M+  +V+P  +T+  L++G  K  N + A    +E+ EK  ++ A
Sbjct: 611 CIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTA 670



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 164/330 (49%), Gaps = 2/330 (0%)

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           ++   VF  +M  F     +  A    DEM K G   D   +  L++ LC+   +KEA +
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           +  EM ++        +T L+ G+CK GK+ EA  V  +M      P++V Y  L  G  
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           + G +  A ELL EM  KG + N  +Y  LI  LC+   +E+A R  ++M+ +G + DV 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TYTT+I   C+S+++DR + +L  M+ +GI P  +TY  +M        +E    L+  M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            +    P+ + YN +++  C    +K    ++  M +  + P  +++ +++ G      +
Sbjct: 592 LEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNM 651

Query: 470 IEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
            EA  +  EM+ +G  L+A  Y  L  LLN
Sbjct: 652 KEALYFHSEMIEKGFRLTASSYNALIRLLN 681



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 6/292 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y AL   L K     A   L+ EM  +  +L     +  L+     A  ++
Sbjct: 458 PNVV----TYTALSDGLCKQGDVCAANELLHEMCSKGLEL-NIFTYNSLINGLCKAGNLE 512

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+  + +M + G +PD + +  ++ ALC++  +  A  L  EM ++  KP++  +  L+
Sbjct: 513 QAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLM 572

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C  G++   K +L  M +    P+   YN+L+  Y     M    E+ K M  +   
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN N+Y +LI+  C+   M+EA     EM   G      +Y  LI    K +K      +
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            + M +  +      Y   +     ++ LE  + L  E+ ++  V  +++ +
Sbjct: 693 FEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVEVTLVKSIADTD 744


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 188/408 (46%), Gaps = 7/408 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +L+  L  + +  +   LM E            +F I    +A   M+ KA+++ ++M
Sbjct: 280 YGSLLNYLCALSEMHSFLDLMVENGLSPDH----HIFNIFFSAYAKCGMIDKAMDIFNKM 335

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            ++G  P+   +G L+DALCK   V +A   F++M  E   P++  F SL+YG C   K 
Sbjct: 336 RQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKW 395

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A+ ++ +M D G  P+ V +N L+     +G++ +   L+  M   G  P+A SYT L
Sbjct: 396 ERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPL 455

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C   + +EA + F  M   G     VTY TL+ G+C + +ID  Y +   M+++G+
Sbjct: 456 ISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGV 515

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P  +TY  I+    + +   E  EL   M   G   D+  YN+++   CK   + EA  
Sbjct: 516 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFK 575

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++  + +  L     +F +M+   L  G   +A + F  +   GL+  P   T + +  +
Sbjct: 576 MFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLV--PNVVTYRLVAEN 633

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           L+    +E    ++S +   G   N       +  L   G +  A +Y
Sbjct: 634 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAY 681



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 167/352 (47%), Gaps = 10/352 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V+    Y ALI +L K+ +         +M  E   P ++   VF  L+    +  
Sbjct: 341 SPNVVN----YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV---VFNSLVYGLCTVD 393

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247
             ++A E++ EM   G  P+   F  L+  LC    V E  +L D M     +P    +T
Sbjct: 394 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYT 453

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+ G+C  G+  EA+ V   M   G  P  V YN LL GY    ++ DA+ L +EM RK
Sbjct: 454 PLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRK 513

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P   +Y  ++  L + ++  EA   ++ M  SG + D+ TY  +++G CKS  +D  
Sbjct: 514 GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEA 573

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           +++  S+  +G+  N +T+  ++ A  K    E+ ++L   +   G VP+V  Y +V   
Sbjct: 574 FKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAEN 633

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             + G L+E  ++++ ME    +P +     +V   L +G +  A  Y  ++
Sbjct: 634 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKL 685



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 186/419 (44%), Gaps = 15/419 (3%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           S  PN V     Y  +I  L K + F     + ++M     KP     + +  L+  + S
Sbjct: 202 SCPPNVV----TYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPN---NDTYNCLIHGYLS 254

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
               K+ +++L++M   G +PD + +G LL+ LC   ++ E     D M E    P    
Sbjct: 255 IGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLC---ALSEMHSFLDLMVENGLSPDHHI 311

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F      + K G + +A  +  +M+  G  P++V Y  L+    ++G++ DA     +M 
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  PN   +  L+  LC ++K E A     EM   G   + V + TLI   C   ++ 
Sbjct: 372 NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVM 431

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               ++D M   G+ P+  +Y  ++  +      +E  ++   M  IG  P    YN ++
Sbjct: 432 EGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLL 491

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C    + +A  ++ EM    ++PG  ++  ++HG        EA E +  M+  G  
Sbjct: 492 HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG-- 549

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           +     T   +LN L ++  V+ A  ++  + +KG +LN+  +TI I +L   G  ++A
Sbjct: 550 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDA 608



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 13/351 (3%)

Query: 228 AAKLFDEM-RE---RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
              LF+ M RE   +  P+   ++ L+   C+ G+L  +      +   G+  + +V N 
Sbjct: 79  VVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQ 138

Query: 284 LLSGYAQMGKMTDAFE-LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           LL G     ++ +A + LL+ M   GC P+  SY++L++  C   + EEA      M   
Sbjct: 139 LLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMAND 198

Query: 343 ---GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
               C  +VVTYTT+I G CK++  DR   +   MI  G+ PN  TY  ++  +    + 
Sbjct: 199 HGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKW 258

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           +E V+++ +M   G  PD   Y  ++   C L E+   +++   M    LSP    F + 
Sbjct: 259 KEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDL---MVENGLSPDHHIFNIF 315

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
              +   G + +A + F +M   GL  +P      AL+++L +  +V+ A+  ++ ++ +
Sbjct: 316 FSAYAKCGMIDKAMDIFNKMRQHGL--SPNVVNYGALIDALCKLGRVDDAEVKFNQMINE 373

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           G   N+  +   ++ L +    + A     +M+D  + P    F  L+  L
Sbjct: 374 GVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 424



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+       +    + L  EM ++   P ++T     IL   F + R   +A E+  
Sbjct: 487 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNT--ILHGLFQTKRF-SEAKELYL 543

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M   G + D + +  +L+ LCK++ V EA K+F  +  +  + ++  FT ++    K G
Sbjct: 544 NMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 603

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A  +   +   G  P++V Y  +     + G + +   L   M + G  PN+    
Sbjct: 604 RKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLN 663

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L++ L     +  A     +++      +  T + LIS F
Sbjct: 664 ALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIF 704


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 214/458 (46%), Gaps = 8/458 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR ++++     K      L   M K +P L +   F  L+   A  +     I + ++M
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKM 111

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            + G   + + +  L++  C+ S +  A  L  +M +  ++PS+   +SLL G+C   ++
Sbjct: 112 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  ++ QM + G+ PD + +  L+ G     K ++A  L+  M ++GC PN  +Y V+
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+   ++ A     +ME +  EA+VV Y+T+I   CK R  D    +   M  +G+
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGV 291

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEM--RKIGCVPDVSNYNVVIRLACKLGELKEA 437
            PN +TY  ++      E   +   L+ +M  RKI   P+V  +N +I    K G+L EA
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKIN--PNVVTFNALIDAFVKEGKLVEA 349

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +++EM   S+ P   ++  +++GF     L EA   F+ M+ +     P   T   L+
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF--PNVVTYNTLI 407

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N   +A++++   +++  +  +G   N   +T  IH  F       A      M+   V 
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           P   T+  L+ GL K    + A  + E +++   E  I
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 505



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 176/363 (48%), Gaps = 8/363 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QPN V     Y  ++  L K       + L+ +M   K +     ++  ++      R  
Sbjct: 222 QPNLV----TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE-ANVVIYSTVIDSLCKYRHE 276

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  P+   +  L+  LC      +A++L  +M ER   P++  F +L
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGKLVEA+ +  +M     +PDI  Y++L++G+    ++ +A  + + M  K C
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y  LI   C+ ++++E    F EM + G   + VTYTTLI GF ++R  D    
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 456

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ PN +TY  ++    K  +LE+ + +   +++    P +  YN++I   C
Sbjct: 457 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K G++++  +++  +    + P    +  M+ GF  +G   EA   F++M   G L  P 
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPL--PD 574

Query: 490 YGT 492
            GT
Sbjct: 575 SGT 577


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 238/530 (44%), Gaps = 65/530 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+K L +  +FG   +L+ EMR+    P +++   +  ++R F   + ++KA+++ +
Sbjct: 145 YNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVS---YNTVIRGFCEGKELEKALQLAN 201

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   GC      +G L+DA CK   + EA  L  EM+ +  +  L  +TSL+ G+C  G
Sbjct: 202 EMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCG 261

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L   K +  ++ + G  P  + YN L+ G+ ++G++ +A E+ + M  +G  PN  +YT
Sbjct: 262 ELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYT 321

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC + K +EA +    M +   E +VVTY  +I+  CK   +    EI++ M +R
Sbjct: 322 GLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKR 381

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV--PDVSNYNVVIRLAC------ 429
              P+ +TY  ++     K +L+E  +L+  M K      PDV ++N +I   C      
Sbjct: 382 RTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLH 441

Query: 430 -----------------------------KLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
                                        K G++ +A+ +W ++  + + P +D++  M+
Sbjct: 442 QALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMI 501

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLS-------APQYGTLKALLNSLLRAQKVEMAKDVW 513
            GF   G L          V +GLL         P       LL+SL +   ++ A  ++
Sbjct: 502 DGFCKTGML---------NVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLF 552

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             +       +V ++ I I      G +K A S  + M  A + P   T++KL+    KL
Sbjct: 553 EEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKL 612

Query: 574 YNRQIAAEITEKVRKMAAERQI-----TFKMYKRRGERD-LKEKAKKQVD 617
                A    +K+     E          K    +GE D L E  KK VD
Sbjct: 613 GYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVD 662



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 196/409 (47%), Gaps = 1/409 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+  F   R    A  VL  M K G   + + +  LL  LC+N    +A  L  EMR+  
Sbjct: 113 LLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNS 172

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +  + +++ G+C+  +L +A  +  +M+ +G    +V +  L+  + + GKM +A 
Sbjct: 173 LMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAM 232

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            LLKEM+ KG + +   YT LI+  C   +++     F E+   G     +TY TLI GF
Sbjct: 233 GLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK  ++    EI + M++RG+ PN  TY  ++       + +E ++L+  M +    P+V
Sbjct: 293 CKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNV 352

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN++I   CK   + +A+ +   M+     P   ++  ++ G   +G L EA +    
Sbjct: 353 VTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYL 412

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+     + P   +  AL++ L +  ++  A D++  +V K    ++    I ++S   +
Sbjct: 413 MLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKS 472

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           G V +A      + ++ ++P  DT+  ++ G  K     +A  +  K+R
Sbjct: 473 GDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMR 521



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 114/501 (22%), Positives = 232/501 (46%), Gaps = 25/501 (4%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           LI +  K  K      L++EM+ +  +  LI   V+  L+R F     + +   + DE+ 
Sbjct: 218 LIDAFCKAGKMDEAMGLLKEMKHKGLEADLI---VYTSLIRGFCDCGELDRGKALFDEVL 274

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
           + G  P    +  L+   CK   +KEA+++F+ M ER  +P++  +T L+ G C  GK  
Sbjct: 275 ERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTK 334

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA  +L  M     EP++V YN +++   +   + DA E+++ M+++   P+  +Y  L+
Sbjct: 335 EALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLL 394

Query: 321 QALCRMEKMEEANRAFVEM--ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
             LC    ++EA++    M  + S  + DV+++  LI G CK  ++ +  +I D ++++ 
Sbjct: 395 GGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKL 454

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              + +T   ++ +  K  ++ + +EL  ++     VP+   Y  +I   CK G L  A 
Sbjct: 455 GAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAK 514

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  +M  + L P    +  ++     +G L +A   F+EM      S P   +   +++
Sbjct: 515 GLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDD--SFPDVISFNIMID 572

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
             L+A  ++ A+ +   +   G   +++ ++  I+     G++ EA S+   M+D+   P
Sbjct: 573 GSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEP 632

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK---------MYKRRGERDLK 609
                  +   LK   ++    ++TE V+K+  +  +  K         M    G  D+ 
Sbjct: 633 DAHICDSV---LKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYMCSSSGNMDIA 689

Query: 610 EKAKKQVDGRKRRARQRRWGG 630
           ++  +  D ++      +WG 
Sbjct: 690 KRLLRVADDKE---EGDKWGA 707



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 169/372 (45%), Gaps = 18/372 (4%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVI 179
           + + M    +PN       Y  LI  L  + K      L+  M  + E+P ++T   + I
Sbjct: 305 FEFMMERGVRPNVY----TYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVT---YNI 357

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM---R 236
           ++ +     +V  A+E+++ M K    PD   +  LL  LC    + EA+KL   M    
Sbjct: 358 IINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDS 417

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYV---LVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
               P +  F +L++G CK  +L +A  +   LV+   AG   DIV  N LL+   + G 
Sbjct: 418 SYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAG---DIVTTNILLNSTLKSGD 474

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +  A EL K++      PN+++YT +I   C+   +  A     +M  S     V  Y  
Sbjct: 475 VNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNC 534

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+S  CK   +D+ + + + M +    P+ +++  ++    K  +++    L+  M   G
Sbjct: 535 LLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAG 594

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD+  Y+ +I    KLG L EA++ +++M  +   P       ++   + QG   +  
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLT 654

Query: 474 EYFKEMVGRGLL 485
           E+ K++V + ++
Sbjct: 655 EFVKKLVDKDVV 666



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 143/294 (48%), Gaps = 2/294 (0%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + V  + LL  + QM K   A  +L  M ++G   N  +Y +L++ LCR  +  +A    
Sbjct: 106 NFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLL 165

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM ++    DVV+Y T+I GFC+ +++++  ++ + M   G   + +T+  ++ A  K 
Sbjct: 166 REMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKA 225

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            +++E + L+ EM+  G   D+  Y  +IR  C  GEL     +++E+     SP   ++
Sbjct: 226 GKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITY 285

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++ GF   G L EA E F+ M+ RG+   P   T   L++ L    K + A  + + +
Sbjct: 286 NTLIRGFCKLGRLKEASEIFEFMMERGV--RPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           + K  E NV  + I I+ L  +  V +A      M      P   T+  L+ GL
Sbjct: 344 LQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGL 397



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 139/307 (45%), Gaps = 2/307 (0%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           NNL++   +      AF   ++M       N  S + L++   +M K   A+     M +
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   +V  Y  L+ G C++ +  +   +L  M Q  ++P+ ++Y  ++    + +ELE+
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            ++L  EM+  GC   +  + ++I   CK G++ EA+ +  EM+   L      +  ++ 
Sbjct: 196 ALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIR 255

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           GF   G L      F E++ RG   +P   T   L+    +  +++ A +++  ++ +G 
Sbjct: 256 GFCDCGELDRGKALFDEVLERG--DSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGV 313

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             NVY +T  I  L   G  KEA      M+  D  P   T+  ++  L K      A E
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALE 373

Query: 582 ITEKVRK 588
           I E ++K
Sbjct: 374 IVELMKK 380


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 207/456 (45%), Gaps = 49/456 (10%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEM 235
           F +L+   A  +   +   +  +M   G  P+ F    L++ LC  + V+E  + +   M
Sbjct: 94  FNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIM 153

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           R  + P +  +TSL+ G C E ++ EA  + ++M+  G  P++V Y  L+ G  + G + 
Sbjct: 154 RRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNIN 213

Query: 296 DAFELLKEMRRK------GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
            A +L +EM          C PN  SY ++I  LC++ K +EA R F EM   G   DVV
Sbjct: 214 LALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVV 273

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           T++ LI   CK   +    + L++M+ RGI+P+  T+  ++       +L+   EL   M
Sbjct: 274 TFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSM 333

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG-FLG--- 465
              G  PDV +Y V+I   CK   ++EA+ ++NEM      P   +F V++ G FL    
Sbjct: 334 PSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKV 393

Query: 466 -------------------------------QGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
                                           GCL EA E F E+    +       +  
Sbjct: 394 GDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNM--KLDIESFN 451

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            L++ L +A+K+E A +++  +  +G + +V  + I I+    NG V  A +    MM+ 
Sbjct: 452 CLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNA-NILFQMMEE 510

Query: 555 D-VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           +   P   T++ L+ G    Y      E+ + + KM
Sbjct: 511 NGCTPNLLTYSALLHG---FYKNNKLEEVVKLLHKM 543



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 212/443 (47%), Gaps = 16/443 (3%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVIL 180
           Y+    A   PN+  + ++    + +++++R+   A+  +M   R   P ++T   +  L
Sbjct: 114 YKKMHLAGLSPNFF-TLNILINCLCNVNRVREGLSAMAGIMR--RGYIPDVVT---YTSL 167

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--- 237
           ++       + +A  +   M K GC P+   +G L+  LC+  ++  A KL  EM     
Sbjct: 168 IKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTS 227

Query: 238 ----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
                 KP++  +  ++   CK GK  EAK +  +M D G  PD+V ++ L+    + G 
Sbjct: 228 PYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGM 287

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A + L+ M  +G  P+  ++T LI+  C +  ++ A   F+ M   G E DV++YT 
Sbjct: 288 VIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTV 347

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI G+CK+  ++   ++ + M++ G  P+  T+  ++       ++ +  +L G ++   
Sbjct: 348 LIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHA 407

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
              ++   +V +   CK G L EA+ ++NE+++ ++    +SF  ++ G      L  A 
Sbjct: 408 VPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAW 467

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E F+++   GL   P   T   ++N   +  +V+ A  ++  +   GC  N+  ++  +H
Sbjct: 468 ELFEKLSQEGL--QPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLH 525

Query: 534 SLFSNGHVKEACSYCLDMMDADV 556
             + N  ++E       M+  DV
Sbjct: 526 GFYKNNKLEEVVKLLHKMIQKDV 548



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 163/335 (48%), Gaps = 11/335 (3%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL+H   +    CK+G +   + +  Q  D      I+ +N LL   A++   +  F L 
Sbjct: 58  SLQHGLPMFIHNCKKGNITSTQAL--QFFDLMMR-SIISFNLLLGALAKIKHYSQVFSLY 114

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           K+M   G  PN  +  +LI  LC + ++ E   A   + R G   DVVTYT+LI G C  
Sbjct: 115 KKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCME 174

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK------IGCV 415
            +I     +   M + G  PN +TY  ++    +   +   ++L  EM        I C 
Sbjct: 175 HRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCK 234

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P++ +YN++I   CK+G+ KEA  ++NEM    + P   +F  ++     +G +IEA ++
Sbjct: 235 PNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKF 294

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
            + M+ RG++  P   T  +L+        ++ AK+++  + +KG E +V ++T+ I+  
Sbjct: 295 LETMMLRGIV--PDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGY 352

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
               +V+EA     +M+     P   TF  L++GL
Sbjct: 353 CKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGL 387



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 188/407 (46%), Gaps = 42/407 (10%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM-V 190
           Y+     Y +LIK L    +      L   M+K    P ++T    +  + R  +  + +
Sbjct: 157 YIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLAL 216

Query: 191 KKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           K   E+L+    Y   C+P+ F +  ++D LCK    KEA +LF+EM ++  +P +  F+
Sbjct: 217 KLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFS 276

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+   CKEG ++EAK  L  M   G  PD+  + +L+ G+  +G +  A EL   M  K
Sbjct: 277 ALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSK 336

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR- 366
           G +P+  SYTVLI   C+   +EEA + + EM R G   D+ T+  L+ G   + K+   
Sbjct: 337 GYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDA 396

Query: 367 ------------------CYEILDSMIQRGILP------NQLTYLHIMLAHE-------- 394
                             C   LD + + G L       N+L   ++ L  E        
Sbjct: 397 KKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDG 456

Query: 395 --KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K  +LE   EL  ++ + G  PDV  Y ++I   CK G++  A  ++  ME    +P 
Sbjct: 457 LCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPN 516

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
             ++  ++HGF     L E  +   +M+ + + L+A  Y  ++ +++
Sbjct: 517 LLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVS 563



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 146/303 (48%), Gaps = 6/303 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI +L K          +E M  R   P L T   F  L+  F     +  A E+  
Sbjct: 275 FSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFT---FTSLIEGFCLVGDLDSAKELFL 331

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEG 257
            MP  G EPD   +  L+   CK  +V+EA KL++EM    K P ++ F  LL G    G
Sbjct: 332 SMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAG 391

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ +AK +   +K      ++ + +  L G  + G + +A EL  E++      +  S+ 
Sbjct: 392 KVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFN 451

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LC+  K+E A   F ++ + G + DVVTY  +I+GFCK+ ++D    +   M + 
Sbjct: 452 CLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEEN 511

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN LTY  ++    K  +LEE V+L+ +M +       S Y +V  +  K  + +E 
Sbjct: 512 GCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCREW 571

Query: 438 VNV 440
           +++
Sbjct: 572 LDI 574


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 222/458 (48%), Gaps = 5/458 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  LI+   ++      + L  +M  +     T E+ ++L +   + R  K A+ + +E
Sbjct: 334 MYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVL-KGLLNDRRWKDAVCLFEE 392

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G  PD F +  L+   C+   ++EA  LFD M++   KPS+  + SLL G+CK+G 
Sbjct: 393 MADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGC 451

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +  +M   GF+P++V Y  L+ GY       +A+ LL EM++ G   N  +Y V
Sbjct: 452 MDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNV 511

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  +C ++++ E +         G    ++TY ++I+GF K+  +   + +   M ++G
Sbjct: 512 LINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKG 571

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN +TY   +  + +    +  ++++ ++R+ G  PD+  YN +I   C+ G +  A+
Sbjct: 572 LPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHAL 631

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +   +    L+P T  +  ++ G+     + E  ++++ M+  G+++     T   L++
Sbjct: 632 QLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVA--DTSTYTTLID 689

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              +   V  A +++S ++ KG   + + +T   H L  +G +  A     +M   DV P
Sbjct: 690 GFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRP 749

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
               +  L+ G  +    Q A  + +++  M  +   T
Sbjct: 750 NVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDT 787



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 211/455 (46%), Gaps = 13/455 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
           V   L++     ++ G    L +E  K+   ++ T+V + +L+R      M +KA E+  
Sbjct: 299 VATTLMRGYCLRQEVGNALNLFKETLKDG--IVPTKVMYGVLIRGCDQVGMTQKAYELCR 356

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
           +M   G  P  F    +L  L  +   K+A  LF+EM +   P +  + +L++  C+  K
Sbjct: 357 QMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFTYNNLIHWHCQAHK 416

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  +  +MK AG +P I  YN+LL GY + G M +A +L  EM  +G  PN  +Y  
Sbjct: 417 LREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYIT 476

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L++     +  + A     EM+++G   +  TY  LI+G C   ++     +L S +  G
Sbjct: 477 LMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEG 536

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
            +P  +TY  I+    K   +     +  +MR+ G  P++  Y   I   C+ G    A+
Sbjct: 537 FIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMAL 596

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + N++    L P   ++  +++GF  +G +  A +    ++  GL  AP       + N
Sbjct: 597 KMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGL--APN----TVVYN 650

Query: 499 SLLRAQK-VEMAKDV---WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           SL+   K + M K+V   +  ++  G   +   +T  I     +G+V  A     +MM  
Sbjct: 651 SLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAK 710

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             +P   TF  L  GL +  +   A ++ E++R++
Sbjct: 711 GYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRL 745



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 166/351 (47%), Gaps = 6/351 (1%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S + Y +L+    K         L  EM  E  KP ++T   ++ LMR + + +    A 
Sbjct: 435 SINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVT---YITLMRGYIAKKDFDNAY 491

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGW 253
            +LDEM + G   +++ +  L++ +C    V E   +    M E F P++  + S++ G+
Sbjct: 492 ALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGF 551

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
            K G +  A  V  QM++ G  P+I+ Y + + GY + G    A ++L ++RR+G  P+ 
Sbjct: 552 VKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDI 611

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y  LI   C+   M  A +  V + + G   + V Y +LI+G+     +    +  +S
Sbjct: 612 VAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYES 671

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           MI+ GI+ +  TY  ++    K   +   +EL  EM   G +PD   +  +    C+ G+
Sbjct: 672 MIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGD 731

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +  A  +  EM    + P    + ++++G+L    L EA     EM+  G+
Sbjct: 732 IDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGI 782



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 192/452 (42%), Gaps = 12/452 (2%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ER 238
           L+ R A     K A+ +  EM   G   D ++F  L+ A  K    ++A +LFDEM    
Sbjct: 163 LLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAE 222

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P  R +   +   CK G    A  +L +MK+ GF+     Y  ++    + G+M +A 
Sbjct: 223 IDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEAL 282

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            +  EMR  G   +    T L++  C  +++  A   F E  + G     V Y  LI G 
Sbjct: 283 RVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGC 342

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            +     + YE+   M  +G+LP+      ++         ++ V L  EM   G +PDV
Sbjct: 343 DQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSG-LPDV 401

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN +I   C+  +L+EA+N+++ M+ A + P  +++  ++ G+  +GC+ EA + + E
Sbjct: 402 FTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSE 461

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M   G    P   T   L+   +  +  + A  +   +   G   N Y + + I+ +   
Sbjct: 462 MPMEGF--KPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMV 519

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT-- 596
             V E        M    +P   T+  ++ G  K      A  + +++R+      I   
Sbjct: 520 DRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITY 579

Query: 597 ---FKMYKRRGERDLKEKAKKQVDGRKRRARQ 625
                 Y R G  D+   A K ++  +RR  Q
Sbjct: 580 TSFIDGYCRTGCSDM---ALKMLNDVRRRGLQ 608



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 191/439 (43%), Gaps = 5/439 (1%)

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           AL  EMR    + +   +F  LM       M + A+ + DEMP    +PD+ V+   + A
Sbjct: 178 ALFMEMRGRGYR-VDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITA 236

Query: 219 LCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
           LCK      A ++  EM+E  F      + +++    K G++ EA  V  +M+DAG + D
Sbjct: 237 LCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMD 296

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           ++V   L+ GY    ++ +A  L KE  + G  P    Y VLI+   ++   ++A     
Sbjct: 297 VIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCR 356

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           +M   G        + ++ G    R+      + + M   G LP+  TY +++  H +  
Sbjct: 357 QMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSG-LPDVFTYNNLIHWHCQAH 415

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L E + L   M+K G  P ++ YN ++   CK G + EAV +++EM      P   +++
Sbjct: 416 KLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYI 475

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            ++ G++ +     A     EM   G +S   Y T   L+N +    +V     +    +
Sbjct: 476 TLMRGYIAKKDFDNAYALLDEMKQNG-VSCNDY-TYNVLINGICMVDRVCEVDGMLKSFM 533

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
           ++G    +  +   I+     G +  A +    M +  + P   T+   + G  +     
Sbjct: 534 SEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSD 593

Query: 578 IAAEITEKVRKMAAERQIT 596
           +A ++   VR+   +  I 
Sbjct: 594 MALKMLNDVRRRGLQPDIV 612



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 43/279 (15%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           ++ +   Y ++I    K    G+ + + ++MR++   P +IT   F+    R   + M  
Sbjct: 537 FIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDM-- 594

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF------------------- 232
            A+++L+++ + G +PD   +  L++  C+  ++  A +L                    
Sbjct: 595 -ALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLI 653

Query: 233 ------DEMRE--RFKPSL---------RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
                 + M+E  +F  S+           +T+L+ G+ K+G +  A  +  +M   G+ 
Sbjct: 654 TGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYI 713

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD   +  L  G  + G +  A +LL+EMRR    PN   Y +LI    R  K++EA R 
Sbjct: 714 PDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRL 773

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
             EM   G + D  TY  L+S   K  + D C ++L+ +
Sbjct: 774 HDEMLNMGIQPDDTTYDILVSK--KFLEADNCADVLNPI 810



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 121/309 (39%), Gaps = 40/309 (12%)

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A +    M  +G  P+  S T L+    R    ++A   F+EM   G   D   +  L+S
Sbjct: 141 ATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMS 200

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
              K    +    + D M    I P+Q  Y   + A  K  +    + ++ EM+++G   
Sbjct: 201 ACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDT 260

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAA----------------------------- 447
               Y  ++ +  K G ++EA+ V +EM  A                             
Sbjct: 261 CDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLF 320

Query: 448 --SLSPGTDSFVVMVHGFLGQGC-----LIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
             +L  G     VM +G L +GC       +A E  ++M G+GLL  P    L  +L  L
Sbjct: 321 KETLKDGIVPTKVM-YGVLIRGCDQVGMTQKAYELCRQMTGQGLL--PSTFELSLVLKGL 377

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
           L  ++ + A  ++  +   G   +V+ +   IH       ++EA +    M  A V P  
Sbjct: 378 LNDRRWKDAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSI 436

Query: 561 DTFAKLMRG 569
           +T+  L+ G
Sbjct: 437 NTYNSLLMG 445



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 90/209 (43%), Gaps = 2/209 (0%)

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+ RG++P+  +   +++   +    ++ + L  EMR  G   D   ++ ++    K G 
Sbjct: 148 MVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGM 207

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            ++AV +++EM  A + P    + + +      G    A    +EM   G  +     T 
Sbjct: 208 HEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDF--TY 265

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
           + +++ L++  ++E A  V   +   G +++V   T  +        V  A +   + + 
Sbjct: 266 RTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLK 325

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
             ++P    +  L+RG  ++   Q A E+
Sbjct: 326 DGIVPTKVMYGVLIRGCDQVGMTQKAYEL 354


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 202/426 (47%), Gaps = 12/426 (2%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A     + H +  +  +I  L    +F     ++  M++EK + IT E+F+ + R +   
Sbjct: 40  AEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCR-ITEEIFLSICRGYGRV 98

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHF 246
            M   AI V  +M  +GC+P +  +  +   L + + +K A   +  MRE   + S+   
Sbjct: 99  HMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSL 158

Query: 247 TSLLYGWCKEGKLVEAKY-VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
             L+   CK    ++A + +  +M   G +PD   Y  L++G  ++GK  +A EL KEM 
Sbjct: 159 NVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMD 218

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KGC P+  +Y+ L+  LC+   ++EA   F +M++   E +V TY++L+ G CK+    
Sbjct: 219 TKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSL 278

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              E+L+ M+++   PN +TY  ++    K+ +L E VE +  M+  G  PD   Y  +I
Sbjct: 279 EAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKII 338

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVV-------MVHGFLGQGCLIEACEYFKE 478
              C + + +EA    +EM    +SP   ++ +       +V G    G L  + + +  
Sbjct: 339 NGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIG 398

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  RG+  +   GT  +L+    +   +  A  ++  +V  GC  +   W+  +   +  
Sbjct: 399 MRTRGI--SIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDR 456

Query: 539 GHVKEA 544
             V+EA
Sbjct: 457 RKVREA 462



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 139/283 (49%), Gaps = 18/283 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+ K      L +EM  +   P ++T   +  LM     A  V +A+ + D
Sbjct: 194 YGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVT---YSCLMHGLCQAGNVDEAMGLFD 250

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K   EP+ F +  L+D LCKN    EA +L + M R+R KP++  +++L+ G CKEG
Sbjct: 251 KMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEG 310

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           KL EA   L +MK  G +PD  +Y  +++G+  + K  +A   L EM      PN  +++
Sbjct: 311 KLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWS 370

Query: 318 V-------LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           +       ++Q LC    +  + + ++ M   G   D  T+ +L+  FCK   + +   I
Sbjct: 371 LHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARI 430

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEEC-----VELMGE 408
            D M+  G +P+   +  ++     + ++ E      VELM E
Sbjct: 431 FDEMVLDGCVPDHGIWSAVVGGFWDRRKVREAFESIVVELMNE 473



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 130/328 (39%), Gaps = 38/328 (11%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK------------------------- 307
           GF  D   +  ++S      +   A E+L  M+ +                         
Sbjct: 45  GFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDA 104

Query: 308 ----------GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
                     GC P   SY  +   L    +++ A   +  M   G    VV+   LI  
Sbjct: 105 IRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKA 164

Query: 358 FCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
            CK S  ID  +EI   M +RG  P+  TY  ++    K  +  E  EL  EM   GC P
Sbjct: 165 LCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSP 224

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            V  Y+ ++   C+ G + EA+ ++++M+  ++ P   ++  ++ G    G  +EA E  
Sbjct: 225 SVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELL 284

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           + MV +     P   T   L+N L +  K+  A +    +  +G + +   +   I+   
Sbjct: 285 EMMVRK--RHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFA 564
           +    +EA +Y  +M+   + P   T++
Sbjct: 343 NIRKFQEAATYLDEMVLGQISPNRVTWS 370



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 115/274 (41%), Gaps = 3/274 (1%)

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           ++ V+I  L    +   A      M+   C      + ++  G+ +         +   M
Sbjct: 52  TFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKM 111

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK-LGE 433
              G  P   +Y+ +     ++ +L+  +     MR++G    V + NV+I+  CK  G 
Sbjct: 112 NDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGT 171

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A  ++ EM      P + ++  +++G    G   EA E FKEM  +G   +P   T 
Sbjct: 172 IDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKG--CSPSVVTY 229

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++ L +A  V+ A  ++  +  K  E NV+ ++  +  L  NG   EA      M+ 
Sbjct: 230 SCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVR 289

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
               P   T++ L+ GL K      A E  ++++
Sbjct: 290 KRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMK 323



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 4/258 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           +G   D  T+  +IS    + +     E+L+ M +      +  +L I   + +     +
Sbjct: 44  NGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLD 103

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            + +  +M   GC P   +Y  V  +  +  +LK A++ +  M    +     S  V++ 
Sbjct: 104 AIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIK 163

Query: 462 GFL-GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
                 G +  A E F+EM  RG    P   T   L+N L +  K   AK+++  + TKG
Sbjct: 164 ALCKNSGTIDAAFEIFREMPKRG--CDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKG 221

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C  +V  ++  +H L   G+V EA      M    + P   T++ LM GL K      A 
Sbjct: 222 CSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAM 281

Query: 581 EITE-KVRKMAAERQITF 597
           E+ E  VRK      +T+
Sbjct: 282 ELLEMMVRKRHKPNMVTY 299


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 230/494 (46%), Gaps = 29/494 (5%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           G +       +V+N   +A  +   + ++   K+   V     Y  ++ S  K       
Sbjct: 437 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 496

Query: 158 WALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
                EMR+    P ++T   +  L+  +  A+ V  A E+ + M   GC P+   +  L
Sbjct: 497 RKWFNEMREVGCTPNVVT---YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 553

Query: 216 LDALCKNSSVKEAAKLFDEM-----------------RERFKPSLRHFTSLLYGWCKEGK 258
           +D  CK   V++A ++F+ M                     +P++  + +LL G+CK  +
Sbjct: 554 IDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHR 613

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA+ +L  M   G EP+ +VY+ L+ G  ++GK+ +A E+  EM   G      +Y+ 
Sbjct: 614 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 673

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI    ++++ + A++   +M  + C  +VV YT +I G CK  K D  Y+++  M ++G
Sbjct: 674 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 733

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN +TY  ++       ++E C+EL+  M   G  P+   Y V+I   CK G L  A 
Sbjct: 734 CQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAH 793

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           N+  EM+       T  +  ++ GF  +   IE+     E +G+   +AP     + L++
Sbjct: 794 NLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDE-IGQD-DTAPFLSVYRLLID 849

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI--WIHSLFSNGHVKEACSYCLDMMDADV 556
           +L++AQ++EMA  +   + T    L  Y+ T    I SL     V+ A     +M    V
Sbjct: 850 NLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGV 909

Query: 557 MPQPDTFAKLMRGL 570
           +P+  +F  L++GL
Sbjct: 910 IPEMQSFCSLIKGL 923



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 207/447 (46%), Gaps = 31/447 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V     Y ALI +  K +K      L E M  E   P ++T   +  L+     A  
Sbjct: 510 PNVV----TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT---YSALIDGHCKAGQ 562

Query: 190 VKKAIEVLDEM------PKYGC----------EPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           V+KA ++ + M      P               P+   +G LLD  CK+  V+EA KL D
Sbjct: 563 VEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD 622

Query: 234 EMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
            M  E  +P+   + +L+ G CK GKL EA+ V  +M + GF   +  Y++L+  Y ++ 
Sbjct: 623 AMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVK 682

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +   A ++L +M    C PN   YT +I  LC++ K +EA +    ME  GC+ +VVTYT
Sbjct: 683 RQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYT 742

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRK 411
            +I GF    KI+ C E+L+ M  +G+ PN +TY  +++ H  K   L+    L+ EM++
Sbjct: 743 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY-RVLIDHCCKNGALDVAHNLLEEMKQ 801

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
                  + Y  VI    K  E  E++ + +E+     +P    + +++   +    L  
Sbjct: 802 THWPTHTAGYRKVIEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEM 859

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A    +E+            T  +L+ SL  A KVE A  ++S +  KG    + ++   
Sbjct: 860 ALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSL 919

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMP 558
           I  LF N  + EA    LD +   V P
Sbjct: 920 IKGLFRNSKISEAL-LLLDFISHMVCP 945



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 32/454 (7%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS------VK 226
           + ++F  L+  + ++     A ++L +M K G  P   V+  L+ ++C +        + 
Sbjct: 330 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLD 389

Query: 227 EAAKLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            A K + EM        K ++  FT  L   C  GK  +A  V+ +M   GF PD   Y+
Sbjct: 390 LAEKAYSEMLAAGVVLNKINVSSFTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYS 446

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L+      KM  AF L +EM+R G   +  +YT+++ + C+   +E+A + F EM   
Sbjct: 447 KVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV 506

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  +VVTYT LI  + K++K+    E+ ++M+  G LPN +TY  ++  H K  ++E+ 
Sbjct: 507 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 566

Query: 403 VELMGEMRKIGCVPDVSNY-----------NVVIRLA-----CKLGELKEAVNVWNEMEA 446
            ++   M     VPDV  Y           NVV   A     CK   ++EA  + + M  
Sbjct: 567 CQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSM 626

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
               P    +  ++ G    G L EA E   EM   G   A  Y T  +L++   + ++ 
Sbjct: 627 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG-FPATLY-TYSSLIDRYFKVKRQ 684

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           ++A  V S ++   C  NV  +T  I  L   G   EA      M +    P   T+  +
Sbjct: 685 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAM 744

Query: 567 MRGLKKLYNRQIAAEITEKV-RKMAAERQITFKM 599
           + G   +   +   E+ E++  K  A   +T+++
Sbjct: 745 IDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 778



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 207/489 (42%), Gaps = 58/489 (11%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           +++WA +Q  Y H+  VY AL+  + +          ++++R +  + +  +   +L+R+
Sbjct: 110 FFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE-VFGQFLNVLVRK 168

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR------E 237
                    A+E L  +  +   P    + CL+ A  K   +  A+ +  EM       +
Sbjct: 169 HCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD 228

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            F  +LR F    Y  CK GK  EA   L  ++   F PD V Y  L+SG  +     +A
Sbjct: 229 GF--TLRCFA---YSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASLFEEA 280

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            + L  MR   C PN  +Y+ L+      +++    R    M   GC      + +L+  
Sbjct: 281 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 340

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM----------------LAHEKKEEL-- 399
           +C S      Y++L  M++ G +P  + Y  ++                LA +   E+  
Sbjct: 341 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLA 400

Query: 400 -----------------------EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
                                  E+   ++ EM   G +PD S Y+ V+   C   +++ 
Sbjct: 401 AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMEL 460

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++ EM+   L     ++ +MV  F   G + +A ++F EM  R +   P   T  AL
Sbjct: 461 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM--REVGCTPNVVTYTAL 518

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +++ L+A+KV  A +++  ++++GC  N+  ++  I      G V++AC     M  +  
Sbjct: 519 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKD 578

Query: 557 MPQPDTFAK 565
           +P  D + K
Sbjct: 579 VPDVDMYFK 587



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 217/502 (43%), Gaps = 35/502 (6%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMW-----ASKQPNYVHSYDVYRALIKSLSKMRK 153
           G    P +   +++    +G+  Y Y +          P YV    VY  LI S+    K
Sbjct: 326 GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV----VYNILIGSICG-DK 380

Query: 154 FGAVWALMEEMRKEKPQLITTEVFV------ILMRRFASARMVKKAIEVLDEMPKYGCEP 207
               + L++   K   +++   V +         R   SA   +KA  V+ EM   G  P
Sbjct: 381 DSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIP 440

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D   +  +L+ LC  S ++ A  LF+EM R      +  +T ++  +CK G + +A+   
Sbjct: 441 DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWF 500

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M++ G  P++V Y  L+  Y +  K++ A EL + M  +GC PN  +Y+ LI   C+ 
Sbjct: 501 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 560

Query: 327 EKMEEANRAFVEM----------------ERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            ++E+A + F  M                + +    +VVTY  L+ GFCKS +++   ++
Sbjct: 561 GQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKL 620

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD+M   G  PNQ+ Y  ++    K  +L+E  E+  EM + G    +  Y+ +I    K
Sbjct: 621 LDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFK 680

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +     A  V ++M   S +P    +  M+ G    G   EA +  + M  +G    P  
Sbjct: 681 VKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--CQPNV 738

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  A+++      K+E   ++   + +KG   N   + + I     NG +  A +   +
Sbjct: 739 VTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 798

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M           + K++ G  K
Sbjct: 799 MKQTHWPTHTAGYRKVIEGFNK 820



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 146/392 (37%), Gaps = 75/392 (19%)

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L Q++D   E      N L+  + + G  + A E L  ++     P+ ++Y  LIQA  +
Sbjct: 147 LQQIRDDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLK 206

Query: 326 MEKMEEANRAFVEM--------------------------------ERSGCEADVVTYTT 353
            ++++ A+    EM                                E      D V YT 
Sbjct: 207 ADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTK 266

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LISG C++   +   + L+ M     LPN +TY  ++     K++L  C  ++  M   G
Sbjct: 267 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 326

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG------ 467
           C P    +N ++   C  G+   A  +  +M      PG   + +++    G        
Sbjct: 327 CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFD 386

Query: 468 -----------------------------CLIEACEY------FKEMVGRGLLSAPQYGT 492
                                        CL  A +Y       +EM+G+G +  P   T
Sbjct: 387 LLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI--PDTST 444

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              +LN L  A K+E+A  ++  +   G   +VY +TI + S    G +++A  +  +M 
Sbjct: 445 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 504

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +    P   T+  L+    K      A E+ E
Sbjct: 505 EVGCTPNVVTYTALIHAYLKAKKVSYANELFE 536



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 45/242 (18%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           S  PN V    +Y  +I  L K+ K    + LM+ M ++  +P ++T   +  ++  F  
Sbjct: 698 SCAPNVV----IYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT---YTAMIDGFGM 750

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRH 245
              ++  +E+L+ M   G  P+   +  L+D  CKN ++  A  L +EM++   P+    
Sbjct: 751 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 810

Query: 246 FTSLLYGWCKE---------------------------GKLVEAKYVLVQMK----DAGF 274
           +  ++ G+ KE                             L++A+ + + ++     A F
Sbjct: 811 YRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATF 870

Query: 275 EPDIV----VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
              +V     YN+L+       K+  AF+L  EM +KG  P   S+  LI+ L R  K+ 
Sbjct: 871 SATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKIS 930

Query: 331 EA 332
           EA
Sbjct: 931 EA 932


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 219/474 (46%), Gaps = 19/474 (4%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           +++ W SK+P Y H+ + + +++  L + R    V+A  + +R            +++++
Sbjct: 135 QFFYWISKRPFYKHNMNCFISMLNRLVRDR----VFAPADHIR------------ILMIK 178

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKP 241
              +   +++  + L+E+   G     +    LL  L K   V+ A  L+ +M     +P
Sbjct: 179 ACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQP 238

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL  F +L+    K+GK+ EA+ +L Q+      PD+  Y +L+ G+ +   +  AF + 
Sbjct: 239 SLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF 298

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M ++GCDPN+ +Y+ LI  LC   +++EA     EM   G E  V TYT  I+  C  
Sbjct: 299 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 358

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
              +   E++  M +RG  PN  TY  ++    +  +LE  + L  +M K G VP+   Y
Sbjct: 359 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 418

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   C  G    A+ +++ ME       T ++  ++ G    G + +A   F++M+ 
Sbjct: 419 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 478

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            G L  P   T   L+N  L    V  A  +   +   GCE + + +   +      G +
Sbjct: 479 MGPL--PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 536

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           + A  Y  +M++  + P P ++  L+ G  K     IA  + E++ +M     +
Sbjct: 537 ESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNV 590



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 200/422 (47%), Gaps = 6/422 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L+T   F  L+   +    V++A  +L ++ +Y   PD F +  L+   C+N ++  
Sbjct: 237 QPSLLT---FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDL 293

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +FD M +E   P+   +++L+ G C EG++ EA  +L +M + G EP +  Y   ++
Sbjct: 294 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 353

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
               +    +A EL+  M+++GC PN  +YT LI  L R+ K+E A   + +M + G   
Sbjct: 354 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 413

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + VTY  LI+  C   +     +I   M   G L N  TY  I+       ++E+ + L 
Sbjct: 414 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 473

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M K+G +P V  YN +I      G +  A  + + M+     P   ++  +V GF   
Sbjct: 474 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 533

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A  YF+EMV  GL   P   +   L++   +  KV++A  +   +   GC  NV 
Sbjct: 534 GKLESASFYFQEMVECGL--NPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVE 591

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           ++   I+ L       EA   C  M +  ++P   T+  L+ GL +    Q A +I   +
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 651

Query: 587 RK 588
            K
Sbjct: 652 EK 653



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 204/454 (44%), Gaps = 32/454 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI  LS++ K      L  +M KE   P  +T   +  L+           A+++  
Sbjct: 383 YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT---YNALINELCVGGRFSTALKIFH 439

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEG 257
            M  +G   +   +  ++  LC    +++A  LF++M +    P++  + +L+ G+  +G
Sbjct: 440 WMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG 499

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +L  MK+ G EPD   YN L+SG+++ GK+  A    +EM   G +PN  SYT
Sbjct: 500 NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 559

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    +  K++ A      ME  GC  +V +Y  +I+G  K  +     +I D M ++
Sbjct: 560 TLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQ 619

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LPN +TY  ++    +    +   ++  +M K  C+P++  Y+ +I   C+ G+  EA
Sbjct: 620 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 679

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  EME   L+P   +F  ++ GF+  G +  A    + MV  G    P Y T   LL
Sbjct: 680 EILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVG--CKPNYRTYSVLL 737

Query: 498 NS-----LLRAQKVEMA-----------KDVWSCIVTK--------GCELNVYAWTIWIH 533
                  LL  +KV +            KDV   IV+         GCE  +  ++  + 
Sbjct: 738 KGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVS 797

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            L   G   EA     DM +    P  + +  L+
Sbjct: 798 GLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLL 831



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 182/364 (50%), Gaps = 34/364 (9%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V     Y  LI   SK  K     +L+E M +    P +   E +  ++   +   
Sbjct: 552 NPNPVS----YTTLIDGHSKDGKVDIALSLLERMEEMGCNPNV---ESYNAVINGLSKEN 604

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
              +A ++ D+M + G  P+   +  L+D LC+N   + A K+F +M +R   P+L  ++
Sbjct: 605 RFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 664

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SL+YG C+EGK  EA+ +L +M+  G  PD V + +L+ G+  +G++  AF LL+ M   
Sbjct: 665 SLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDV 724

Query: 308 GCDPNANSYTVLIQAL---CRM--EKM---EEANRAFVEMERS----------------G 343
           GC PN  +Y+VL++ L   C +  EK+    EA  +F   E+                 G
Sbjct: 725 GCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIG 784

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           CE  + TY+TL+SG C+  +     +++  M +RG  P++  Y  +++AH K  E++  +
Sbjct: 785 CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHAL 844

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           ++   +   G    +S Y  +I   CK G+++EA  +++ M     +     + V+V G 
Sbjct: 845 KIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGL 904

Query: 464 LGQG 467
           L +G
Sbjct: 905 LKEG 908



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 209/487 (42%), Gaps = 47/487 (9%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVI 179
           Y+  + +  QP+ +     +  LI  LSK  K      ++ ++ +    P + T   +  
Sbjct: 228 YKQMLNSGIQPSLL----TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFT---YTS 280

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+      R +  A  V D M K GC+P+   +  L++ LC    V EA  + +EM E+ 
Sbjct: 281 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 340

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T  +   C      EA  ++ +MK  G  P++  Y  L+SG +++GK+  A 
Sbjct: 341 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI 400

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +M ++G  PN  +Y  LI  LC   +   A + F  ME  G  A+  TY  +I G 
Sbjct: 401 GLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 460

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C    I++   + + M++ G LP  +TY  ++  +  K  +     L+  M++ GC PD 
Sbjct: 461 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 520

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG------CLIEA 472
             YN ++    K G+L+ A   + EM    L+P   S+  ++ G    G       L+E 
Sbjct: 521 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLER 580

Query: 473 CE----------------------YFKE-------MVGRGLLSAPQYGTLKALLNSLLRA 503
            E                       F E       M  +GLL  P   T   L++ L R 
Sbjct: 581 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLL--PNVITYTTLIDGLCRN 638

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            + + A  ++  +  + C  N+Y ++  I+ L   G   EA     +M    + P   TF
Sbjct: 639 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 698

Query: 564 AKLMRGL 570
             L+ G 
Sbjct: 699 TSLIDGF 705



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 222/509 (43%), Gaps = 48/509 (9%)

Query: 134 YVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           Y  S DV  Y +LI    + R     + + + M KE   P  +T   +  L+    +   
Sbjct: 269 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT---YSTLINGLCNEGR 325

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V +A+++L+EM + G EP  + +   + ALC     +EA +L   M++R  +P+++ +T+
Sbjct: 326 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 385

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G  + GKL  A  +  +M   G  P+ V YN L++     G+ + A ++   M   G
Sbjct: 386 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 445

Query: 309 CDPNANSYTVLIQALC-------------RMEKM----------------------EEAN 333
              N  +Y  +I+ LC             +M KM                        A 
Sbjct: 446 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 505

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R    M+ +GCE D  TY  L+SGF K  K++        M++ G+ PN ++Y  ++  H
Sbjct: 506 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGH 565

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K  +++  + L+  M ++GC P+V +YN VI    K     EA  + ++M    L P  
Sbjct: 566 SKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNV 625

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  ++ G    G    A + F +M  R  L  P   T  +L+  L +  K + A+ + 
Sbjct: 626 ITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL--PNLYTYSSLIYGLCQEGKADEAEILL 683

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK- 572
             +  KG   +   +T  I      G +  A      M+D    P   T++ L++GL+K 
Sbjct: 684 KEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKE 743

Query: 573 --LYNRQIAAEITEKVRKMAAERQITFKM 599
             L   ++A +          E+ + F++
Sbjct: 744 CLLLEEKVAVQHEAVYSFSPHEKDVNFEI 772



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 30/346 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I  LSK  +F     + ++M ++   P +IT   +  L+         + A ++  
Sbjct: 593 YNAVINGLSKENRFSEAEKICDKMAEQGLLPNVIT---YTTLIDGLCRNGRTQFAFKIFH 649

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M K  C P+ + +  L+  LC+     EA  L  EM R+   P    FTSL+ G+   G
Sbjct: 650 DMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLG 709

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSG-------------------YAQMGKMTDA- 297
           ++  A  +L +M D G +P+   Y+ LL G                   Y+      D  
Sbjct: 710 RIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVN 769

Query: 298 FE----LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           FE    LL  M   GC+P  ++Y+ L+  LCR  +  EA +   +M+  G   D   Y +
Sbjct: 770 FEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYS 829

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+   CK+ ++D   +I  S+  +G   +   Y  ++ A  K  ++EE   L   M +  
Sbjct: 830 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 889

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
              D   + V++    K GEL   + + + ME+ + +P   ++V++
Sbjct: 890 WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 150/333 (45%), Gaps = 34/333 (10%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN +     Y  LI  L +  +    + +  +M K K  P L T   +  L+        
Sbjct: 623 PNVI----TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT---YSSLIYGLCQEGK 675

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
             +A  +L EM + G  PDE  F  L+D       +  A  L   M +   KP+ R ++ 
Sbjct: 676 ADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSV 735

Query: 249 LLYGWCKEGKLVEAKY------------------------VLVQMKDAGFEPDIVVYNNL 284
           LL G  KE  L+E K                         +L +M + G EP +  Y+ L
Sbjct: 736 LLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTL 795

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +SG  + G+  +A +L+K+M+ +G  P+   Y  L+ A C+  +++ A + F  +E  G 
Sbjct: 796 VSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGF 855

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           +  +  Y  LI   CK+ +++    + D+M+++    +++ +  ++    K+ EL+ C++
Sbjct: 856 QLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMK 915

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           L+  M      P++  Y ++ R   ++G+  E+
Sbjct: 916 LLHIMESKNFTPNIQTYVILGRELSRIGKSIES 948



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           + D Y  L+  L +  +F     L+++M KE+      E++  L+        V  A+++
Sbjct: 788 TLDTYSTLVSGLCRKGRFYEAEQLVKDM-KERGFCPDREIYYSLLIAHCKNLEVDHALKI 846

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
              +   G +    ++  L+ ALCK   V+EA  LFD M E+ +      +T L+ G  K
Sbjct: 847 FHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLK 906

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK------MTDAFELLKE 303
           EG+L     +L  M+   F P+I  Y  L    +++GK      + D  ++LK+
Sbjct: 907 EGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKVLKD 960


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 196/403 (48%), Gaps = 10/403 (2%)

Query: 106 LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR 165
           L  +V+ R        Y ++ W SK+     S  VY  ++  L +MR+F  +  +++EM 
Sbjct: 5   LVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVLDEMS 64

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           K +   +  + + +L+ R+A A MV++AI   ++  + G E D   F  LL  LC+   V
Sbjct: 65  K-REGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLCRYKHV 123

Query: 226 KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
             A  L       F   ++    +L GWC  G + EAK     +  +  +PD+  Y   +
Sbjct: 124 DVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYGTFI 183

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
                 GK+  A +L + M +  C P+      +I ALC  +++ EA   F  M+  GC 
Sbjct: 184 KALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKERGCI 243

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECV 403
            +V TY +LI   CK  ++++ YE+LD M ++    +P+++T+ +++ + +K EE+   +
Sbjct: 244 PNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSLKKPEEVAGVL 303

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           E    M+  GC  +    N++++L       ++    W EME   L     S+ +M+H  
Sbjct: 304 E---RMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTIMIHWL 360

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL-LRAQK 505
             +G + +A  YF EM  +G++  P+    K L NS+  R QK
Sbjct: 361 YDKGRVEDALRYFGEMENKGMVPEPR---TKILCNSMNTRKQK 400



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 131/349 (37%), Gaps = 66/349 (18%)

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           VYN +L    +M +  +   +L EM ++    + ++Y VL+        +EEA  AF + 
Sbjct: 39  VYNEILDILGRMRRFEELTLVLDEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKR 98

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS-------------------------- 373
              G E D+V++  L+   C+ + +D    +L S                          
Sbjct: 99  RELGLELDLVSFQKLLMYLCRYKHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVR 158

Query: 374 --------MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
                   +I     P+  TY   + A   K +L   ++L   M K+ C PDV   N VI
Sbjct: 159 EAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVI 218

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C    + EA+ V+  M+     P   ++  ++      G + +  E   EM  +   
Sbjct: 219 DALCFKKRVPEALAVFEGMKERGCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGS 278

Query: 486 SAPQYGTLKALLNSLLRAQKV--------------------------------EMAKDVW 513
             P   T   LL SL + ++V                                E  +  W
Sbjct: 279 CMPDEITFNYLLKSLKKPEEVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTW 338

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
             +   G  L+  ++TI IH L+  G V++A  Y  +M +  ++P+P T
Sbjct: 339 EEMEKNGLGLDRRSYTIMIHWLYDKGRVEDALRYFGEMENKGMVPEPRT 387


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 230/494 (46%), Gaps = 29/494 (5%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAV 157
           G +       +V+N   +A  +   + ++   K+   V     Y  ++ S  K       
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 158 WALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
                EMR+    P ++T   +  L+  +  A+ V  A E+ + M   GC P+   +  L
Sbjct: 538 RKWFNEMREVGCTPNVVT---YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 216 LDALCKNSSVKEAAKLFDEM-----------------RERFKPSLRHFTSLLYGWCKEGK 258
           +D  CK   V++A ++F+ M                     +P++  + +LL G+CK  +
Sbjct: 595 IDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHR 654

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA+ +L  M   G EP+ +VY+ L+ G  ++GK+ +A E+  EM   G      +Y+ 
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI    ++++ + A++   +M  + C  +VV YT +I G CK  K D  Y+++  M ++G
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN +TY  ++       ++E C+EL+  M   G  P+   Y V+I   CK G L  A 
Sbjct: 775 CQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAH 834

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           N+  EM+       T  +  ++ GF  +   IE+     E +G+   +AP     + L++
Sbjct: 835 NLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDE-IGQD-DTAPFLSVYRLLID 890

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI--WIHSLFSNGHVKEACSYCLDMMDADV 556
           +L++AQ++EMA  +   + T    L  Y+ T    I SL     V+ A     +M    V
Sbjct: 891 NLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGV 950

Query: 557 MPQPDTFAKLMRGL 570
           +P+  +F  L++GL
Sbjct: 951 IPEMQSFCSLIKGL 964



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 207/447 (46%), Gaps = 31/447 (6%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V     Y ALI +  K +K      L E M  E   P ++T   +  L+     A  
Sbjct: 551 PNVV----TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT---YSALIDGHCKAGQ 603

Query: 190 VKKAIEVLDEM------PKYGC----------EPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           V+KA ++ + M      P               P+   +G LLD  CK+  V+EA KL D
Sbjct: 604 VEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD 663

Query: 234 EMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
            M  E  +P+   + +L+ G CK GKL EA+ V  +M + GF   +  Y++L+  Y ++ 
Sbjct: 664 AMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVK 723

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           +   A ++L +M    C PN   YT +I  LC++ K +EA +    ME  GC+ +VVTYT
Sbjct: 724 RQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYT 783

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMRK 411
            +I GF    KI+ C E+L+ M  +G+ PN +TY  +++ H  K   L+    L+ EM++
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY-RVLIDHCCKNGALDVAHNLLEEMKQ 842

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
                  + Y  VI    K  E  E++ + +E+     +P    + +++   +    L  
Sbjct: 843 THWPTHTAGYRKVIEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEM 900

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A    +E+            T  +L+ SL  A KVE A  ++S +  KG    + ++   
Sbjct: 901 ALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSL 960

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMP 558
           I  LF N  + EA    LD +   V P
Sbjct: 961 IKGLFRNSKISEAL-LLLDFISHMVCP 986



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 32/454 (7%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS------VK 226
           + ++F  L+  + ++     A ++L +M K G  P   V+  L+ ++C +        + 
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLD 430

Query: 227 EAAKLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            A K + EM        K ++  FT  L   C  GK  +A  V+ +M   GF PD   Y+
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYS 487

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L+      KM  AF L +EM+R G   +  +YT+++ + C+   +E+A + F EM   
Sbjct: 488 KVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV 547

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  +VVTYT LI  + K++K+    E+ ++M+  G LPN +TY  ++  H K  ++E+ 
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607

Query: 403 VELMGEMRKIGCVPDVSNY-----------NVVIRLA-----CKLGELKEAVNVWNEMEA 446
            ++   M     VPDV  Y           NVV   A     CK   ++EA  + + M  
Sbjct: 608 CQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSM 667

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
               P    +  ++ G    G L EA E   EM   G   A  Y T  +L++   + ++ 
Sbjct: 668 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG-FPATLY-TYSSLIDRYFKVKRQ 725

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           ++A  V S ++   C  NV  +T  I  L   G   EA      M +    P   T+  +
Sbjct: 726 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAM 785

Query: 567 MRGLKKLYNRQIAAEITEKV-RKMAAERQITFKM 599
           + G   +   +   E+ E++  K  A   +T+++
Sbjct: 786 IDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 207/489 (42%), Gaps = 58/489 (11%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           +++WA +Q  Y H+  VY AL+  + +          ++++R +  + +  E   +L+R+
Sbjct: 151 FFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE-VFGEFLNVLVRK 209

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR------E 237
                    A+E L  +  +   P    + CL+ A  K   +  A+ +  EM       +
Sbjct: 210 HCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD 269

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            F  +LR F    Y  CK GK  EA   L  ++   F PD V Y  L+SG  +     +A
Sbjct: 270 GF--TLRCFA---YSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASLFEEA 321

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            + L  MR   C PN  +Y+ L+      +++    R    M   GC      + +L+  
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM----------------LAHEKKEEL-- 399
           +C S      Y++L  M++ G +P  + Y  ++                LA +   E+  
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLA 441

Query: 400 -----------------------EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
                                  E+   ++ EM   G +PD S Y+ V+   C   +++ 
Sbjct: 442 AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMEL 501

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++ EM+   L     ++ +MV  F   G + +A ++F EM  R +   P   T  AL
Sbjct: 502 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM--REVGCTPNVVTYTAL 559

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +++ L+A+KV  A +++  ++++GC  N+  ++  I      G V++AC     M  +  
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKD 619

Query: 557 MPQPDTFAK 565
           +P  D + K
Sbjct: 620 VPDVDMYFK 628



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 216/502 (43%), Gaps = 35/502 (6%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMW-----ASKQPNYVHSYDVYRALIKSLSKMRK 153
           G    P +   +++    +G+  Y Y +          P YV    VY  LI S+    K
Sbjct: 367 GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV----VYNILIGSICG-DK 421

Query: 154 FGAVWALMEEMRKEKPQLITTEVFV------ILMRRFASARMVKKAIEVLDEMPKYGCEP 207
                 L++   K   +++   V +         R   SA   +KA  V+ EM   G  P
Sbjct: 422 DSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIP 481

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D   +  +L+ LC  S ++ A  LF+EM R      +  +T ++  +CK G + +A+   
Sbjct: 482 DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWF 541

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M++ G  P++V Y  L+  Y +  K++ A EL + M  +GC PN  +Y+ LI   C+ 
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601

Query: 327 EKMEEANRAFVEM----------------ERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            ++E+A + F  M                + +    +VVTY  L+ GFCKS +++   ++
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKL 661

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD+M   G  PNQ+ Y  ++    K  +L+E  E+  EM + G    +  Y+ +I    K
Sbjct: 662 LDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFK 721

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
           +     A  V ++M   S +P    +  M+ G    G   EA +  + M  +G    P  
Sbjct: 722 VKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--CQPNV 779

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  A+++      K+E   ++   + +KG   N   + + I     NG +  A +   +
Sbjct: 780 VTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 839

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M           + K++ G  K
Sbjct: 840 MKQTHWPTHTAGYRKVIEGFNK 861



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 146/392 (37%), Gaps = 75/392 (19%)

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L Q++D   E      N L+  + + G  + A E L  ++     P+ ++Y  LIQA  +
Sbjct: 188 LQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLK 247

Query: 326 MEKMEEANRAFVEM--------------------------------ERSGCEADVVTYTT 353
            ++++ A+    EM                                E      D V YT 
Sbjct: 248 ADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTK 307

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LISG C++   +   + L+ M     LPN +TY  ++     K++L  C  ++  M   G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG------ 467
           C P    +N ++   C  G+   A  +  +M      PG   + +++    G        
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCD 427

Query: 468 -----------------------------CLIEACEY------FKEMVGRGLLSAPQYGT 492
                                        CL  A +Y       +EM+G+G +  P   T
Sbjct: 428 LLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI--PDTST 485

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              +LN L  A K+E+A  ++  +   G   +VY +TI + S    G +++A  +  +M 
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +    P   T+  L+    K      A E+ E
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 45/242 (18%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           S  PN V    +Y  +I  L K+ K    + LM+ M ++  +P ++T   +  ++  F  
Sbjct: 739 SCAPNVV----IYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT---YTAMIDGFGM 791

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRH 245
              ++  +E+L+ M   G  P+   +  L+D  CKN ++  A  L +EM++   P+    
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851

Query: 246 FTSLLYGWCKE---------------------------GKLVEAKYVLVQMK----DAGF 274
           +  ++ G+ KE                             L++A+ + + ++     A F
Sbjct: 852 YRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATF 911

Query: 275 EPDIV----VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
              +V     YN+L+       K+  AF+L  EM +KG  P   S+  LI+ L R  K+ 
Sbjct: 912 SATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKIS 971

Query: 331 EA 332
           EA
Sbjct: 972 EA 973


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 213/452 (47%), Gaps = 11/452 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  L+    K ++      L E M+K    +P L+T   + +L+  +  +  V + + +L
Sbjct: 152 YNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVT---YSVLIDCYCKSGEVGEGLGLL 208

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           +EM + G + D FV+  L+ A C    ++   +LFDEM R +  P++  ++ L+ G  + 
Sbjct: 209 EEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRT 268

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+  EA  +L  M   G  PD+V Y  L  G  + G+  DA ++L  M +KG +P   +Y
Sbjct: 269 GRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTY 328

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            V++  LC+ ++M++A      M + G + D VTY TL+ G C + KI    ++   ++ 
Sbjct: 329 NVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLS 388

Query: 377 R--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
               + P+  T  +++    K+  + +   +   M ++G   ++  YN +I       +L
Sbjct: 389 EKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKL 448

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA+ +W     +  SP + ++ VM++G      L  A   F +M   G+   P      
Sbjct: 449 IEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGI--RPTVIDYN 506

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           AL+ SL R   +E A+ ++  +      ++V ++ I I      G VK A     +M   
Sbjct: 507 ALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMM 566

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           D++P   TF+ L+    KL     A  + EK+
Sbjct: 567 DLVPDAVTFSILINRFSKLGMLDEAMGLYEKM 598



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 190/398 (47%), Gaps = 8/398 (2%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPK-YGCE-PDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           ++++ F  +    KA+ +  +M + Y C  PD   +  L++  CK   + EA  LF+ M+
Sbjct: 117 LVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMK 176

Query: 237 E--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +    +P+L  ++ L+  +CK G++ E   +L +M+  G + D+ VY++L+S +   G +
Sbjct: 177 KGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDI 236

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
               EL  EM R+   PN  +Y+ L+Q L R  +  EA+    +M   G   DVV YT L
Sbjct: 237 ETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVL 296

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
             G CK+ +     ++LD M+Q+G  P  LTY  ++    K++ +++   ++  M K G 
Sbjct: 297 ADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGK 356

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV--MVHGFLGQGCLIEA 472
            PD   YN +++  C  G++ EA+++W  + +       D F    ++ G   +G + +A
Sbjct: 357 KPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDA 416

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                 MV  GL       T   L+   L A+K+  A  +W   V  G   N   +++ I
Sbjct: 417 ARIHSSMVEMGL--QGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMI 474

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           + L     +  A      M D+ + P    +  LM  L
Sbjct: 475 NGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSL 512



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 181/396 (45%), Gaps = 8/396 (2%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+     AR     + V  +M      P       L ++         A  +   M +R 
Sbjct: 48  LIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRG 107

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA--GFEPDIVVYNNLLSGYAQMGKMTD 296
           F  ++ +   +L G+C+ G+  +A  +  QMK       PD V YN L++G+ +  ++ +
Sbjct: 108 FGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAE 167

Query: 297 AFELLKEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           A  L + M++ G C PN  +Y+VLI   C+  ++ E      EMER G +ADV  Y++LI
Sbjct: 168 ARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLI 227

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           S FC    I+   E+ D M++R + PN +TY  +M    +     E  E++ +M   G  
Sbjct: 228 SAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVR 287

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PDV  Y V+    CK G   +A+ V + M      PGT ++ V+V+G   +  + +A   
Sbjct: 288 PDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGV 347

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL--NVYAWTIWIH 533
            + MV +G    P   T   LL  L  A K+  A D+W  ++++   +  +V+     I 
Sbjct: 348 VEMMVKKG--KKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQ 405

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            L   G V +A      M++  +     T+  L+ G
Sbjct: 406 GLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEG 441



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 158/328 (48%), Gaps = 8/328 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L   L K  + G    +++ M  + E+P  +T  V V           +  A  V++
Sbjct: 293 YTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVV---NGLCKEDRMDDAFGVVE 349

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERF--KPSLRHFTSLLYGWCK 255
            M K G +PD   +  LL  LC    + EA  L+  +  E+F  KP +    +L+ G CK
Sbjct: 350 MMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCK 409

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           EG++ +A  +   M + G + +IV YN L+ GY    K+ +A +L K     G  PN+ +
Sbjct: 410 EGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMT 469

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y+V+I  LC+M+ +  A   F +M+ SG    V+ Y  L++  C+   +++   +   M 
Sbjct: 470 YSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMR 529

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
                 + +++  I+    K  +++   EL+ EM  +  VPD   ++++I    KLG L 
Sbjct: 530 NVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLD 589

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           EA+ ++ +M +    PG   F  ++ G+
Sbjct: 590 EAMGLYEKMVSCGHVPGVVVFDSLLKGY 617



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 171/384 (44%), Gaps = 43/384 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY +LI +            L +EM  RK  P ++T   +  LM+        ++A E+L
Sbjct: 222 VYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVT---YSCLMQGLGRTGRWREASEML 278

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKE 256
            +M   G  PD   +  L D LCKN    +A K+ D M ++ + P    +  ++ G CKE
Sbjct: 279 KDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKE 338

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM--RRKGCDPNAN 314
            ++ +A  V+  M   G +PD V YN LL G    GK+ +A +L K +   +    P+  
Sbjct: 339 DRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVF 398

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY----------------------- 351
           +   LIQ LC+  ++ +A R    M   G + ++VTY                       
Sbjct: 399 TCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYA 458

Query: 352 ------------TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
                       + +I+G CK + +     +   M   GI P  + Y  +M +  +++ L
Sbjct: 459 VESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSL 518

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           E+   L  EMR +    DV ++N++I    K G++K A  + +EM    L P   +F ++
Sbjct: 519 EQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSIL 578

Query: 460 VHGFLGQGCLIEACEYFKEMVGRG 483
           ++ F   G L EA   +++MV  G
Sbjct: 579 INRFSKLGMLDEAMGLYEKMVSCG 602



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 141/306 (46%), Gaps = 5/306 (1%)

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M  A   P     + L   +      + AF +L  M ++G   N  +  ++++  CR  
Sbjct: 67  KMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSG 126

Query: 328 KMEEANRAFVEMERS-GCEA-DVVTYTTLISGFCKSRKIDRCYEILDSMIQRG-ILPNQL 384
           + ++A   F +M+R+  C   D VTY TL++GFCK++++     + ++M + G   PN +
Sbjct: 127 QCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLV 186

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY  ++  + K  E+ E + L+ EM + G   DV  Y+ +I   C  G+++    +++EM
Sbjct: 187 TYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEM 246

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
               +SP   ++  ++ G    G   EA E  K+M  RG+   P       L + L +  
Sbjct: 247 LRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGV--RPDVVAYTVLADGLCKNG 304

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           +   A  V   +V KG E     + + ++ L     + +A      M+     P   T+ 
Sbjct: 305 RAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYN 364

Query: 565 KLMRGL 570
            L++GL
Sbjct: 365 TLLKGL 370



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 137/331 (41%), Gaps = 43/331 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEV-- 196
           Y  ++  L K  +    + ++E M K+  KP  +T   +  L++    A  + +A+++  
Sbjct: 328 YNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVT---YNTLLKGLCGAGKIHEAMDLWK 384

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER------------------ 238
           L    K+  +PD F    L+  LCK   V +AA++   M E                   
Sbjct: 385 LLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLA 444

Query: 239 ------------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
                             F P+   ++ ++ G CK   L  A+ +  +MKD+G  P ++ 
Sbjct: 445 ARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVID 504

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN L++   +   +  A  L +EMR    + +  S+ ++I    +   ++ A     EM 
Sbjct: 505 YNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMF 564

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
                 D VT++ LI+ F K   +D    + + M+  G +P  + +  ++  +  K E E
Sbjct: 565 MMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETE 624

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + + L+ +M     V D    + ++   C +
Sbjct: 625 KIISLLHQMADKDVVLDSKLTSTILACLCHM 655



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 5/265 (1%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P   S + L ++         A      M + G   +V     ++ GFC+S + D+   +
Sbjct: 75  PRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSL 134

Query: 371 LDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRL 427
              M +    ++P+ +TY  ++    K + L E   L   M+K G C P++  Y+V+I  
Sbjct: 135 FSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDC 194

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK GE+ E + +  EME   L      +  ++  F G+G +    E F EM+ R +  +
Sbjct: 195 YCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKV--S 252

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L+  L R  +   A ++   +  +G   +V A+T+    L  NG   +A   
Sbjct: 253 PNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKV 312

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
              M+     P   T+  ++ GL K
Sbjct: 313 LDLMVQKGEEPGTLTYNVVVNGLCK 337



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 10/210 (4%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVI 179
           ++Y + +   PN +     Y  +I  L KM+       L  +M+    +P +I    +  
Sbjct: 455 WKYAVESGFSPNSM----TYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVID---YNA 507

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           LM        +++A  +  EM       D   F  ++D   K   VK A +L  EM    
Sbjct: 508 LMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMD 567

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P    F+ L+  + K G L EA  +  +M   G  P +VV+++LL GY   G+     
Sbjct: 568 LVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKII 627

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
            LL +M  K    ++   + ++  LC M +
Sbjct: 628 SLLHQMADKDVVLDSKLTSTILACLCHMSR 657



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 3/223 (1%)

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
           +TLI    K+R+ D    +   M+   +LP   +   +  +            ++  M K
Sbjct: 46  STLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTK 105

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME--AASLSPGTDSFVVMVHGFLGQGCL 469
            G   +V N N+V++  C+ G+  +A++++++M+     + P   ++  +V+GF     L
Sbjct: 106 RGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRL 165

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            EA   F+ M  +G    P   T   L++   ++ +V     +   +  +G + +V+ ++
Sbjct: 166 AEARVLFEAM-KKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYS 224

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             I +    G ++       +M+   V P   T++ LM+GL +
Sbjct: 225 SLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGR 267


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 218/507 (42%), Gaps = 39/507 (7%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K+  + H+   YR++I+ L    KF A+  ++ +MR+     +   V+V  M+ +     
Sbjct: 32  KEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRKGK 91

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V++A+ V + M  Y CEP  F +  ++  L  +    +A K++  MR+R   P +  FT 
Sbjct: 92  VQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR--- 305
            +  +C+  +   A  +L  M   G E ++V Y  ++ G+ +     + +EL  +M    
Sbjct: 152 RMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASG 211

Query: 306 --------------------------------RKGCDPNANSYTVLIQALCRMEKMEEAN 333
                                           ++G  PN  +Y   IQ LC+  +++ A 
Sbjct: 212 VSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAV 271

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R    +   G + DVVTY  LI G CK+ K       L  ++  G+ P+  TY  ++  +
Sbjct: 272 RMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K   ++    ++      G VPD   Y  +I   C  GE   A+ ++NE     + P  
Sbjct: 332 CKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
             +  ++ G   QG ++EA +   EM  +GL+  P+  T   L+N L +   V  A  + 
Sbjct: 392 ILYNTLIKGLSNQGLILEAAQLASEMSEKGLI--PEVQTFNILVNGLCKMGCVSDADGLV 449

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             +++KG   +++ + I IH   +   ++ A      MMD  V P   T+  L+ GL K 
Sbjct: 450 KVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKT 509

Query: 574 YNRQIAAEITEK-VRKMAAERQITFKM 599
              +   E  +  V K  A    TF +
Sbjct: 510 SKYEDVMETYKTMVEKGCAPNLFTFNI 536



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 203/437 (46%), Gaps = 6/437 (1%)

Query: 139 DVYRALI--KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           DVY   I  KS  +  +  A   L+  M  +  ++     +  ++  F       +  E+
Sbjct: 145 DVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEM-NVVAYCTVVGGFYEENFKDEGYEL 203

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
             +M   G       F  LL  LCK   VKE  KL D++ +R   P+L  +   + G C+
Sbjct: 204 FGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQ 263

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +G+L  A  ++ ++ D G +PD+V YN L+ G  +  K  +A   L ++  +G +P++ +
Sbjct: 264 KGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFT 323

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  LI   C+   ++ A R  V    +G   D  TY +LI G C   + +R   + +  +
Sbjct: 324 YNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEAL 383

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            +GI PN + Y  ++     +  + E  +L  EM + G +P+V  +N+++   CK+G + 
Sbjct: 384 GKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVS 443

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A  +   M +    P   +F +++HG+  Q  +  A E    M+  G+   P   T  +
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGV--DPDVYTYNS 501

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LLN L +  K E   + +  +V KGC  N++ + I + SL     + +A     +M +  
Sbjct: 502 LLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKS 561

Query: 556 VMPQPDTFAKLMRGLKK 572
           V P   TF  L+ G  K
Sbjct: 562 VNPDAVTFGTLIDGFCK 578



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 204/435 (46%), Gaps = 11/435 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y   I+ L +  +  A   ++  +  +  KP ++T   +  L+         ++A   L 
Sbjct: 254 YNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVT---YNYLIYGLCKNSKFQEAEVYLG 310

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK-LFDEMRERFKPSLRHFTSLLYGWCKEG 257
           ++   G EPD F +  L+   CK   V+ A + L + +   F P    + SL+ G C EG
Sbjct: 311 KLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEG 370

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A  +  +    G +P++++YN L+ G +  G + +A +L  EM  KG  P   ++ 
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFN 430

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+  LC+M  + +A+     M   G   D+ T+  LI G+    K++   EILD M+  
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDN 490

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+  TY  ++    K  + E+ +E    M + GC P++  +N+++   C+  +L +A
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKA 550

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM--VGRGLLSAPQYGTLKA 495
           + +  EM+  S++P   +F  ++ GF   G L  A   F++M  V     S P Y     
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTY---NI 607

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           ++++      V MA+ ++  +V +    + Y + + +      G+V     + L+MM+  
Sbjct: 608 IIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENG 667

Query: 556 VMPQPDTFAKLMRGL 570
            +P   T  +++  L
Sbjct: 668 FIPSLTTLGRVINCL 682



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 151/350 (43%), Gaps = 42/350 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           YR+LI  L    +     AL  E   +  KP +I   ++  L++  ++  ++ +A ++  
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVI---LYNTLIKGLSNQGLILEAAQLAS 415

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  P+   F  L++ LCK   V +A  L   M  + + P +  F  L++G+  + 
Sbjct: 416 EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL 475

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+  A  +L  M D G +PD+  YN+LL+G  +  K  D  E  K M  KGC PN  ++ 
Sbjct: 476 KMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFN 535

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI---------------------- 355
           +L+++LCR  K+++A     EM+      D VT+ TLI                      
Sbjct: 536 ILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEV 595

Query: 356 --------------SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
                           F +   +    ++   M+ R + P+  TY  ++    K   ++ 
Sbjct: 596 YMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDL 655

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
             + + EM + G +P ++    VI   C    + EA  + + M    L P
Sbjct: 656 GYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+  L KM        L++ M  +   P + T   F IL+  +++   ++ A+E+LD
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFT---FNILIHGYSTQLKMENALEILD 485

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
            M   G +PD + +  LL+ LCK S  ++  + +  M E+   P+L  F  LL   C+  
Sbjct: 486 VMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYH 545

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK---GCDPNAN 314
           KL +A  +L +MK+    PD V +  L+ G+ + G +  A+ L ++M       C  +  
Sbjct: 546 KLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSC--STP 603

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y ++I A      +  A + F EM       D  TY  ++ GFCK+  +D  Y+ L  M
Sbjct: 604 TYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEM 663

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           ++ G +P+  T   ++     ++ + E   ++  M + G VP+  N
Sbjct: 664 MENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVN 709


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 199/433 (45%), Gaps = 43/433 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  L +   K   +     L++EM     KP +    ++++ + R       +K  E+ 
Sbjct: 201 IYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFEL- 259

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKE 256
             M K+G  P+ + +  ++D  CK  +V++A  L+ E +     P++  F +L+ G+CK 
Sbjct: 260 --MKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 317

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +LV A+ + V M   G +P++ VYN L+ G+ + G M +A  LL EM      P+  +Y
Sbjct: 318 RELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTY 377

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T+LI  LC  +++ EANR F +M+         TY +LI G+CK   +++  ++   M  
Sbjct: 378 TILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTA 437

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ PN +T+  ++  +    +++  + L  EM   G VPDV  Y  +I    K   +KE
Sbjct: 438 SGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKE 497

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ ++++M  A + P   +F  +V GF  +G L  A ++++E                  
Sbjct: 498 ALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQEN----------------- 540

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
                        +  W          N   +T  I  L  NG++  A  +  DM    +
Sbjct: 541 ----------NQQRSCW----------NHVGFTCLIEGLCQNGYILRASRFFSDMRSCGI 580

Query: 557 MPQPDTFAKLMRG 569
            P   ++  +++G
Sbjct: 581 TPDICSYVSMLKG 593



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 208/446 (46%), Gaps = 17/446 (3%)

Query: 136 HSYDVYRALIKSLSKMRKFGA--------VWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           H Y + R LIKSL +  K  +        ++  +E+++  K    +  VF +L+  F   
Sbjct: 89  HKYTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPK---FSIGVFSLLIMEFLEM 145

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
            + ++A+ V  EM    C PD      +L+ L +          +  M  R      H  
Sbjct: 146 GLFEEALWVSREMK---CSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIY 202

Query: 248 SLLYGWC-KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +L+  C K+G   + + +L +M   G +P++ +Y   +    +  KM +A ++ + M++
Sbjct: 203 FVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKK 262

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  PN  +Y+ +I   C+   + +A   + E+  +    +VV + TL+ GFCK+R++  
Sbjct: 263 HGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVT 322

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +   M++ G+ PN   Y  ++  H K   + E V L+ EM  +   PDV  Y ++I 
Sbjct: 323 ARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILIN 382

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             C   ++ EA  ++ +M+   + P + ++  ++HG+  +  + +A +   EM   G+  
Sbjct: 383 GLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGV-- 440

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   T   L++     + ++ A  ++  +  KG   +V  +T  I + F   ++KEA  
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALR 500

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKK 572
              DM++A + P   TFA L+ G  K
Sbjct: 501 LYSDMLEAGIHPNDHTFACLVDGFWK 526



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 182/416 (43%), Gaps = 54/416 (12%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           + EK+F ++KK H  LP L     +S ++     T  V    G      Y+  + A   P
Sbjct: 252 EAEKMFELMKK-HGVLPNL---YTYSAMIDGYCKTGNVRQAYG-----LYKEILVAELLP 302

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMV 190
           N V    V+  L+    K R+     +L   M K    P L    V+  L+     +  +
Sbjct: 303 NVV----VFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY---VYNCLIHGHCKSGNM 355

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSL 249
            +A+ +L EM      PD F +  L++ LC    V EA +LF +M+ ER  PS   + SL
Sbjct: 356 LEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSL 415

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++G+CKE  + +A  +  +M  +G EP+I+ ++ L+ GY  +  +  A  L  EM  KG 
Sbjct: 416 IHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGI 475

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSG---------CEADV------------ 348
            P+  +YT LI A  +   M+EA R + +M  +G         C  D             
Sbjct: 476 VPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAID 535

Query: 349 --------------VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
                         V +T LI G C++  I R       M   GI P+  +Y+ ++  H 
Sbjct: 536 FYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHL 595

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
           +++ + + + L  +M K G +P++    ++ R     G +K A  + N     ++S
Sbjct: 596 QEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVKSACFLTNSSRLKTVS 651


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 216/472 (45%), Gaps = 39/472 (8%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L P +   VI R  D   LG +++ ++    +  H+++ Y  L+++L K+    +   + 
Sbjct: 74  LNPSIAFEVIKRFSDPL-LGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVF 132

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           + MR +   L  + +  +L+  +A    +  A   L+E+  YG +   FV+  LL+ L K
Sbjct: 133 DCMRSDG-ILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVK 191

Query: 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            + V EA  LF   RE  +P                                F PD+  +
Sbjct: 192 QNLVDEAVLLF---REHLEPY-------------------------------FVPDVYSF 217

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE-ME 340
           N L+ G  ++G++  AFE  + M   GC P+  SY  LI   CR+ ++ + +    E M 
Sbjct: 218 NILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDML 277

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   DV+TYT++ISG+CK   +    E+ D M+  GI PN  T+  ++    K   + 
Sbjct: 278 IKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMR 337

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             + +  +M  +GC+PDV  +  +I   C+ GE+ + + +W EM+  +LSP   ++ V++
Sbjct: 338 SAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLI 397

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           +    +  + EA  + + +    ++  P       +++   +A KV+ A  + + +  K 
Sbjct: 398 NALCKENRIREARNFLRHLKSSEVVPKPF--IYNPVIDGFCKAGKVDEANFIVAEMQEKK 455

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           C  +   +TI I      G + EA S    M++ + +P   T   L+  L K
Sbjct: 456 CRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 7/342 (2%)

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   CK G    AK V   M+  G  PD  +   L+S YA+MGK+  A   L E+   G
Sbjct: 115 LMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYG 174

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
              +   Y  L+  L +   ++EA   F E        DV ++  LI G C+  +ID+ +
Sbjct: 175 IKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAF 234

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE-MRKIGCVPDVSNYNVVIRL 427
           E   +M   G  P+ ++Y  ++    +  E+ +  +L+ E M   G  PDV  Y  +I  
Sbjct: 235 EFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISG 294

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CKLG++K A  +++EM ++ + P   +F V++ GF   G +  A   +++M+  G L  
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCL-- 352

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T  +L++   R  +V     +W  +  +    NVY + + I++L     ++EA ++
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF 412

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQ----IAAEITEK 585
              +  ++V+P+P  +  ++ G  K         I AE+ EK
Sbjct: 413 LRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEK 454


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 215/487 (44%), Gaps = 58/487 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y A+I  L +      + +L+ EM KE+      +++  ++      R   +A+ VL++
Sbjct: 348 TYGAIIHWLGRKSDLTKIESLLWEM-KERGLSPNVQIYNTVIYALCKCRSASQALAVLNQ 406

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGK 258
           M     +PD   F  L+ A C+   V+EA KL  E +R   +P+   +T L++G+C  G+
Sbjct: 407 MVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGE 466

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           ++ A  +LV+M   G  PD+V    L+ G    G++ +A  + ++M  +   P+AN Y V
Sbjct: 467 VMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNV 526

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC+   +  A    VEM     + D   YTTLI GF +S K+    +I + M ++G
Sbjct: 527 LISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKG 586

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
              + + Y  ++  + K   + E V  M  MRK+GC+PD   Y  +I    K G++K A+
Sbjct: 587 GYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAAL 646

Query: 439 --------------------------NVWN---------EMEAASLSPGTDSFVVMVHGF 463
                                     N+ N          M++  L P    + V++   
Sbjct: 647 RFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSL 706

Query: 464 LGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLL---------------RAQKV 506
             +   I+A  YF+ M    LL+  +P   T+  L+N L                +A K 
Sbjct: 707 FKKDKAIQAAAYFEHM----LLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKK 762

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
               DV+  +++ G +  + A+   I SL  +  + +A      M +   +P P TF  L
Sbjct: 763 SALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSL 822

Query: 567 MRGLKKL 573
           + G   +
Sbjct: 823 LYGFSSV 829



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 164/366 (44%), Gaps = 3/366 (0%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D++    ++  LC    V+E  +L +    E   P    +  L+ G+C+ G +     +L
Sbjct: 275 DDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLL 334

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M+  G  P +V Y  ++    +   +T    LL EM+ +G  PN   Y  +I ALC+ 
Sbjct: 335 GEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKC 394

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               +A     +M  S  + DVVT+ TLI+ FC+   ++   ++L   I+R + PNQL+Y
Sbjct: 395 RSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSY 454

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++     + E+    +L+ EM   G  PDV     +I      G++ EA+ V  +M  
Sbjct: 455 TPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAE 514

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             + P  + + V++ G   +  L  A     EM+ + +   P       L++  +R+ K+
Sbjct: 515 RQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKV--QPDKFVYTTLIDGFIRSDKL 572

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             A+ ++  +  KG   ++ A+   I     +G + EA      M     +P   T+  L
Sbjct: 573 SDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTL 632

Query: 567 MRGLKK 572
           + G  K
Sbjct: 633 IDGYAK 638



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 173/395 (43%), Gaps = 46/395 (11%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V + + +L EM   G  P    +G ++  L + S + +   L  EM+ER   P+++ + +
Sbjct: 327 VGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNT 386

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++Y  CK     +A  VL QM  + F+PD+V +N L++ + + G + +A +LL+E  R+ 
Sbjct: 387 VIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRE 446

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            +PN  SYT LI   C   ++  A+   VEM   G   DVVT   LI G   S ++D   
Sbjct: 447 LEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEAL 506

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + + M +R ++P                                   D + YNV+I   
Sbjct: 507 MVREKMAERQVMP-----------------------------------DANIYNVLISGL 531

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   L  A N+  EM    + P    +  ++ GF+    L +A + F+ M  +G     
Sbjct: 532 CKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKG----- 586

Query: 489 QYGTLKALLNSLLRAQ-KVEMAKDVWSCIVTK---GCELNVYAWTIWIHSLFSNGHVKEA 544
            Y  + A  N++++   K  M  +   C+ +    GC  + + +T  I      G +K A
Sbjct: 587 GYRDIVAY-NAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAA 645

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
             +  DMM     P   T+A L+ G   + N   A
Sbjct: 646 LRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSA 680



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 128/323 (39%), Gaps = 55/323 (17%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY  LI    +  K      + E M +EK        +  +++ +  + M+ +A+  +  
Sbjct: 558 VYTTLIDGFIRSDKLSDARKIFEFM-EEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSS 616

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAK-LFDEMRERFKPSLRHFTSLLYGWCKEGK 258
           M K GC PDEF +  L+D   K   +K A + L D M+ R KP++  + SL+ G+C  G 
Sbjct: 617 MRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGN 676

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLL--------------------------------- 285
              A+ +   M+  G  P++V Y  L+                                 
Sbjct: 677 TDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHY 736

Query: 286 -----------------SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
                            S   Q  K +   ++ K +   G DP  ++Y  +I +LCR   
Sbjct: 737 LVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNM 796

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG---ILPNQLT 385
           + +A     +M   GC  D VT+ +L+ GF    K  +    L +  Q+    I+   +T
Sbjct: 797 LGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGKSGKWRSALPNEFQQDEFEIICKYMT 856

Query: 386 YLHIMLAHEKKEELEECVELMGE 408
            L+  +    ++E+   ++L  E
Sbjct: 857 LLNQHVMSPVRDEVSRVLQLYAE 879



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 114/309 (36%), Gaps = 74/309 (23%)

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           E+L   R  G D    S  V+++ LC   ++EE  R        GC    V Y  LI G+
Sbjct: 264 EMLARDREGGADDY--STCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGY 321

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV--- 415
           C  R+ D         + RG+L                        L+GEM   G +   
Sbjct: 322 C--RRGD---------VGRGLL------------------------LLGEMEMKGIMPTV 346

Query: 416 --------------------------------PDVSNYNVVIRLACKLGELKEAVNVWNE 443
                                           P+V  YN VI   CK     +A+ V N+
Sbjct: 347 VTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQ 406

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M A+   P   +F  ++  F  +G + EA +  +E + R L   P   +   L++     
Sbjct: 407 MVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRREL--EPNQLSYTPLIHGFCVR 464

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            +V +A D+   ++ +G   +V      IH L  +G V EA      M +  VMP  + +
Sbjct: 465 GEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIY 524

Query: 564 AKLMRGLKK 572
             L+ GL K
Sbjct: 525 NVLISGLCK 533


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 201/434 (46%), Gaps = 5/434 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  +I  L++  +      L++ MR  K     T  F  L+  + +   V+KA  +  E
Sbjct: 270 TYNVVINGLARKGELEKAAQLVDRMRMSKKASAFT--FNPLITGYFARGSVEKAGALQLE 327

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G  P    +  ++  + ++ +V+ A   F EMR     P L  + SL+ G+CK G 
Sbjct: 328 MENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGN 387

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA ++   +K AG  P ++ YN LL GY ++G + +A    +EM  +GC P+ ++YT+
Sbjct: 388 LKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTI 447

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L+    ++  +      F EM   G + D   Y T IS           +++ + MI RG
Sbjct: 448 LMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRG 507

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I  + +TY   +    K   L++   L  +M   G  PD   Y  +I   C+ G L+EA 
Sbjct: 508 ISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREAR 567

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           ++++ M  + L P   ++ V +H +  +G L  A  +F++M+  G+   P   T   L++
Sbjct: 568 DIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGV--RPNEVTYNVLIH 625

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           +L R  +  +A   +  ++ +G   N Y +T+ I      G+ +EA     +M    + P
Sbjct: 626 ALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHP 685

Query: 559 QPDTFAKLMRGLKK 572
              T   L +G  +
Sbjct: 686 DHCTHNALFKGFDE 699



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 199/426 (46%), Gaps = 8/426 (1%)

Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY--GCEPDEFVFG 213
           +V+A M ++  E P ++T   +  L+  F     V +A ++L EM     GC P +  + 
Sbjct: 217 SVYAEMLQLGIE-PSIVT---YNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYN 272

Query: 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
            +++ L +   +++AA+L D MR   K S   F  L+ G+   G + +A  + ++M++ G
Sbjct: 273 VVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEG 332

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P +V YN ++ G  + G +  A     EMR  G  P+  +Y  LI   C+   ++EA 
Sbjct: 333 IVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEAL 392

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F +++R+G    V+TY  L+ G+C+   ++        M+++G  P+  TY  +M   
Sbjct: 393 WLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGS 452

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K   L    E   EM   G  PD   YN  I     LG   EA  +   M +  +S  T
Sbjct: 453 RKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDT 512

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++ + + G    G L +A   + +MV  GL   P   T   L+++     ++  A+D++
Sbjct: 513 VTYNIFLDGLCKSGNLKDAYVLWMKMVSDGL--QPDCITYTCLIHAHCERGRLREARDIF 570

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             ++  G   +   +T++IH+    G++  A  +   M++  V P   T+  L+  L ++
Sbjct: 571 DGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRM 630

Query: 574 YNRQIA 579
               +A
Sbjct: 631 GRTNLA 636



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 7/344 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +LI    K         L  ++++    P ++T   + IL+  +     +++A    
Sbjct: 374 TYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLT---YNILLDGYCRLGDLEEARRFK 430

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM + GC+PD   +  L++   K  ++    + FDEM  +  +P    + + +      
Sbjct: 431 QEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELIL 490

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G   EA  +   M   G   D V YN  L G  + G + DA+ L  +M   G  P+  +Y
Sbjct: 491 GSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITY 550

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI A C   ++ EA   F  M  SG     VTYT  I  +C+   +   Y     M++
Sbjct: 551 TCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLE 610

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ PN++TY  ++ A  +        +   EM + G  P+   Y ++I   CK G  +E
Sbjct: 611 EGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEE 670

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           A+ +++EM    + P   +   +  GF  +G    A +Y + +V
Sbjct: 671 AIRLYSEMHQHGIHPDHCTHNALFKGF-DEGQSKHAIQYMENVV 713



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 134/288 (46%), Gaps = 5/288 (1%)

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            +EM   G  P      ++++AL    + ++    + EM + G E  +VTY TL+  F +
Sbjct: 184 FREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFR 243

Query: 361 SRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
             ++D+  ++L  M  R  G LP+ +TY  ++    +K ELE+  +L+  MR +      
Sbjct: 244 EGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMR-MSKKASA 302

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +N +I      G +++A  +  EME   + P   ++  ++HG    G +  A   F E
Sbjct: 303 FTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVE 362

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M   GLL  P   T  +L+N   +A  ++ A  ++  +   G   +V  + I +      
Sbjct: 363 MRAMGLL--PDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRL 420

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           G ++EA  +  +M++    P   T+  LM G +K+ N  +  E  +++
Sbjct: 421 GDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEM 468


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 216/472 (45%), Gaps = 39/472 (8%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L P +   VI R  D   LG +++ ++    +  H+++ Y  L+++L K+    +   + 
Sbjct: 74  LNPSIAFEVIKRFSDPL-LGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVF 132

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           + MR +   L  + +  +L+  +A    +  A   L+E+  YG +   FV+  LL+ L K
Sbjct: 133 DCMRSDG-ILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVK 191

Query: 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            + V EA  LF   RE  +P                                F PD+  +
Sbjct: 192 QNLVDEAVLLF---REHLEPY-------------------------------FVPDVYSF 217

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE-ME 340
           N L+ G  ++G++  AFE  + M   GC P+  SY  LI   CR+ ++ + +    E M 
Sbjct: 218 NILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDML 277

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   DV+TYT++ISG+CK   +    E+ D M+  GI PN  T+  ++    K   + 
Sbjct: 278 IKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMR 337

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             + +  +M  +GC+PDV  +  +I   C+ GE+ + + +W EM+  +LSP   ++ V++
Sbjct: 338 SAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLI 397

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           +    +  + EA  + + +    ++  P       +++   +A KV+ A  + + +  K 
Sbjct: 398 NALCKENRIREARNFLRHLKSSEVVPKPF--IYNPVIDGFCKAGKVDEANFIVAEMQEKK 455

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           C  +   +TI I      G + EA S    M++ + +P   T   L+  L K
Sbjct: 456 CRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 7/342 (2%)

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   CK G    AK V   M+  G  PD  +   L+S YA+MGK+  A   L E+   G
Sbjct: 115 LMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYG 174

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
              +   Y  L+  L +   ++EA   F E        DV ++  LI G C+  +ID+ +
Sbjct: 175 IKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAF 234

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE-MRKIGCVPDVSNYNVVIRL 427
           E   +M   G  P+ ++Y  ++    +  E+ +  +L+ E M   G  PDV  Y  +I  
Sbjct: 235 EFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISG 294

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CKLG++K A  +++EM ++ + P   +F V++ GF   G +  A   +++M+  G L  
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCL-- 352

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T  +L++   R  +V     +W  +  +    NVY + + I++L     ++EA ++
Sbjct: 353 PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF 412

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQ----IAAEITEK 585
              +  ++V+P+P  +  ++ G  K         I AE+ EK
Sbjct: 413 LRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEK 454


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 218/444 (49%), Gaps = 15/444 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V     Y  L+++L   R       L+  MR    +  ++T   +  L+R    A 
Sbjct: 112 RPNAVS----YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVT---YGTLIRGLCDAA 164

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            V KA+E++ EM + G EP+  V+  LL   CK+   ++  K+F EM E+  +P +  +T
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+   CK GK  +A  V+  M   G EP++V YN L++   + G + +A  +LK+M  K
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKID 365
           G  P+  +Y  LI+ L  + +M+EA     EM R     + +VVT+ ++I G C   ++ 
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMR 344

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           + +++   M + G + N +TY  ++    +  ++ + +ELM EM  +G  PD   Y+++I
Sbjct: 345 QAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILI 404

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           +  CK+ ++  A ++ + M    + P    ++ ++     QG +  A   F EM     L
Sbjct: 405 KGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPL 464

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
               Y T   +++   +A  ++ AK++   IV +G   +   ++I I+    +G ++ A 
Sbjct: 465 DVVAYST---MIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAAN 521

Query: 546 SYCLDMMDADVMPQPDTFAKLMRG 569
                M  +  +P    F  L++G
Sbjct: 522 GVLKQMTASGFLPDVAVFDSLIQG 545



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 201/417 (48%), Gaps = 15/417 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V    VY +L++   K  ++  V  +  EM ++  +P ++   ++  L+       
Sbjct: 182 EPNVV----VYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVV---MYTGLIDSLCKVG 234

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             KKA  V+D M + G EP+   +  L++ +CK  SVKEA  +  +M E+   P +  + 
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYN 294

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAG--FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +L+ G     ++ EA ++L +M       +P++V +N+++ G   +G+M  AF++   M 
Sbjct: 295 TLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMME 354

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC  N  +Y +LI  L R+ K+ +A     EM   G E D  TY+ LI GFCK  ++D
Sbjct: 355 ETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVD 414

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           R  ++L +M  RGI P    Y+ +++A  ++  +E    L  EM       DV  Y+ +I
Sbjct: 415 RAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMI 473

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             ACK G+LK A  +   +    L+P   ++ ++++ F   G +  A    K+M   G L
Sbjct: 474 HGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFL 533

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
             P      +L+       ++    ++   ++TK   L+    +    SL ++   K
Sbjct: 534 --PDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGK 588



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR----HFT 247
           +A  +LD +P      D   +  +L ALC+      A  L   M     P+ R     +T
Sbjct: 63  EATSLLDALPSV---RDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYT 119

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+   C +    +A  +L  M+ AG   D+V Y  L+ G     ++  A EL+ EM   
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCES 179

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G +PN   Y+ L+Q  C+  + E+  + FVEM   G E DVV YT LI   CK  K  + 
Sbjct: 180 GIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + ++D M++RG+ PN +TY  ++    K+  ++E + ++ +M + G  PDV  YN +I+ 
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 428 ACKLGELKEAVNVWNEMEAAS--LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              + E+ EA+ +  EM      + P   +F  ++ G    G + +A +    M   G +
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCM 359

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
                 T   L+  LLR  KV  A ++   + + G E + + ++I I        V  A 
Sbjct: 360 V--NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAE 417

Query: 546 SYCLDMMDADVMPQ 559
                M D  + P+
Sbjct: 418 DLLSTMRDRGIEPE 431



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 171/375 (45%), Gaps = 11/375 (2%)

Query: 227 EAAKLFDEMRERFKPSLR---HFTSLLYGWCKEGKLVEAKYVLVQMK---DAGFEPDIVV 280
           EA  L D +     PS+R    + ++L   C+ G    A  +L  M         P+ V 
Sbjct: 63  EATSLLDAL-----PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y  L+           A  LL+ MR  G   +  +Y  LI+ LC   ++++A     EM 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            SG E +VV Y++L+ G+CKS + +   ++   M ++GI P+ + Y  ++ +  K  + +
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           +   +M  M + G  P+V  YNV+I   CK G +KEA+ V  +M    ++P   ++  ++
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G      + EA    +EMV    +  P   T  +++  L    ++  A  V + +   G
Sbjct: 298 KGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETG 357

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C +N+  + + I  L     V++A     +M    + P   T++ L++G  K++    A 
Sbjct: 358 CMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAE 417

Query: 581 EITEKVRKMAAERQI 595
           ++   +R    E ++
Sbjct: 418 DLLSTMRDRGIEPEL 432


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 213/466 (45%), Gaps = 42/466 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY  L+ +L +     AV  + + MRK   +P + T   + +L++       V  A  +L
Sbjct: 129 VYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYT---YNLLIKALCQNDRVGAARRML 185

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--------------------RE 237
           DEM + GC PDE     ++ ALCK   + EA  +  EM                    RE
Sbjct: 186 DEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMTPVGASYNAVVHALCGQFRMRE 245

Query: 238 RF-----------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            F           +P    +TS++  +CK  +L  A  +L +M   G  P++  +  L+ 
Sbjct: 246 VFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVK 305

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G+   GK+ DA  +   M  +G  P+  SY VLI+ LC +  ++ A   F  M +S C  
Sbjct: 306 GFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLP 365

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DV TY+TLI GF K+  +D    I + M   G  PN + Y +++    KK   ++   L+
Sbjct: 366 DVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLI 425

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M    C P+   +N +IR  C LG    A+NV++ M      P   ++  ++HG   +
Sbjct: 426 DKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFRE 485

Query: 467 GCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           G   +A     EM+  G  LS   Y T    ++ L + + ++ A  +   ++ +G + + 
Sbjct: 486 GNCEDALRMLTEMLNHGFELSLVSYNT---TISGLCQMRMIKEAMILLGRMIIQGIQPDA 542

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGL 570
           + +   IH+    G+V+ A ++ L  MDA   P+    +  LM GL
Sbjct: 543 FTFNAIIHAYCKEGNVRAA-AWMLGRMDAVNCPRNIVAYTSLMSGL 587



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 188/414 (45%), Gaps = 16/414 (3%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC---KNSSVKEAAKLFDEMRE 237
           +RR A+A  +      L EM   G    E   G L+ A+C   +  +   A K F   R 
Sbjct: 62  VRRLAAAGDLDGVQYTLQEMRLRGVACPE---GALVAAICAFARAGAADRALKTFYRARH 118

Query: 238 RF---KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                 P++R +  LL    +E  +     V   M+ AG EP++  YN L+    Q  ++
Sbjct: 119 DLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRV 178

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  +L EM RKGC P+  S+T +I ALC++++++EA     EM   G      +Y  +
Sbjct: 179 GAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMTPVG-----ASYNAV 233

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           +   C   ++   + ++D M+ RG+ P+ + Y  I+ A  K  EL     ++  M   GC
Sbjct: 234 VHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGC 293

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           VP+V  + V+++     G++ +A+ +WN M A   +P T S+ V++ G    G L  A  
Sbjct: 294 VPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALF 353

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F  M     L  P   T   L++   +A  +++A  +W+ +   GC+ NV  +T  +  
Sbjct: 354 VFSCMGKSDCL--PDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDV 411

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
           L       +A +    M   +  P   TF  L+R L  L     A  +   +R+
Sbjct: 412 LCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRR 465



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 164/399 (41%), Gaps = 43/399 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A++ +L    +   V+ +++EM  R  +P    T  +  ++  F  AR ++ A  +L 
Sbjct: 230 YNAVVHALCGQFRMREVFLVVDEMVHRGLRPD---TVAYTSIVGAFCKARELRMACAILA 286

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M   GC P+   F  L+     +  V +A  +++ M  E + PS   +  L+ G C  G
Sbjct: 287 RMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIG 346

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L  A +V   M  +   PD+  Y+ L+ G+++ G +  A  +  +M   GC PN   YT
Sbjct: 347 DLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYT 406

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            ++  LC+    ++A     +M    C  + +T+ TLI   C   +  R   +   M + 
Sbjct: 407 NMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRY 466

Query: 378 GILPNQLTY---LHIMLAHEKKEE--------------------------------LEEC 402
           G  PN  TY   LH +      E+                                ++E 
Sbjct: 467 GCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEA 526

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L+G M   G  PD   +N +I   CK G ++ A  +   M+A +      ++  ++ G
Sbjct: 527 MILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSG 586

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
              Q  L +A  Y  +M+  G+   P   T   L+  + 
Sbjct: 587 LCSQHKLDDAMVYLLKMLYEGI--CPNEATWNVLVRGIF 623


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 229/497 (46%), Gaps = 31/497 (6%)

Query: 93  LALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR 152
           L+ Q   V++ P L  RV++    +  +  R + WA  QP +  S  V+ A+++ L++  
Sbjct: 376 LSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNN 435

Query: 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF-- 210
              + + +ME                    R  +A M  + ++VL      GC   E   
Sbjct: 436 LMRSAYWVME--------------------RVINANM-HRIVDVLIG----GCVSSEVSV 470

Query: 211 -VFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
            +   L+    K S V++   +FD+M + R  P +++   +L     +  + +A  V   
Sbjct: 471 KILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT 530

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M + G +P IV YN LL  Y + GK+    +LL EM+R+GC PN  +Y VLI  L +  +
Sbjct: 531 MGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGE 590

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
            E+A     EM ++G +    TY  LI G+     +     + + M+ +G  P   TY  
Sbjct: 591 FEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNS 650

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
            +    K   + + ++ + +M     +PDV +YN +I   C+LG L +A  +++E+ +  
Sbjct: 651 FIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 710

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           L P   ++  ++ G   QG L  A +   EM+  G+  AP   T   L+N   +   + M
Sbjct: 711 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI--APDIVTYTILVNGSCKMGSLSM 768

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A++ +  ++ +G EL+ YA+   I      G    A S   +M+     P    +  ++ 
Sbjct: 769 AQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 828

Query: 569 GLKKLYNRQIAAEITEK 585
           GL KL N + A+E+ +K
Sbjct: 829 GLCKLGNLEEASELLQK 845



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 128/270 (47%), Gaps = 10/270 (3%)

Query: 326 MEKMEEAN-RAFVEMERSGC---EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           ME++  AN    V++   GC   E  V     LI  + K   +++C  + D MI+  + P
Sbjct: 444 MERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSP 503

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           +      I+     K+ + + VE+   M + G  P +  YN ++   CK G++++ +++ 
Sbjct: 504 DVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLL 563

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTL-KALLNS 499
           +EM+    +P   ++ V+++G   +G   +A     EM+  GL +SA  Y  L     N 
Sbjct: 564 SEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNK 623

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            L A+ + + ++    +V KG    V  +  +I+ L   G + +A     DM+  +++P 
Sbjct: 624 GLLAEALSLQEE----MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPD 679

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             ++  L+ G  +L N   A  + +++R +
Sbjct: 680 VVSYNTLIYGYCRLGNLMKAFLLFDELRSI 709


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 216/454 (47%), Gaps = 4/454 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y +LI    + +   A  A+   M   K  L     +  L+  F  AR V +A+++  +
Sbjct: 241 TYTSLILGYCRNKNVDAANAIFLSM-PNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQ 299

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGK 258
           M +  C P    +  ++ ALC+     EA  +F EM E+  +P++  +T L+   C++  
Sbjct: 300 MHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSN 359

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +AK +L  M + G  P +V YN L+ GY + G    A E+L  M    C PNA +Y  
Sbjct: 360 FDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNE 419

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   CR + + +A     +M     + +VVTY  LI G CK   +   Y++L  M + G
Sbjct: 420 LILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESG 479

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++P++ TY   +    K+  +EE   L   +++ G   +   Y+ +I   CK+G++ +  
Sbjct: 480 LVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGR 539

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + ++M +A   P + ++  ++ G+  +    EA      M+ R +   P   T   L++
Sbjct: 540 FLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDI--EPAADTYTILID 597

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           +LL+  + + A D++  +++ G   +V+ +T +IH+  S+G +K+A      M    +MP
Sbjct: 598 NLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMP 657

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
               +   +    +  +   A  I +++ ++  E
Sbjct: 658 DTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCE 691



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 200/408 (49%), Gaps = 12/408 (2%)

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKA-IEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           K K  L    + ++L+ RF     +K   +E+LD+M      P+ F    +++  CK  +
Sbjct: 164 KFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDM----VTPNIFTLNTMVNGYCKLGN 219

Query: 225 VKEAAKLFDEMRERFKPSLRHFT--SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
           V EA +L+     +   SL  FT  SL+ G+C+   +  A  + + M + G   + V Y 
Sbjct: 220 VVEA-ELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYT 278

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           NL+ G+ +  ++ +A +L  +M    C P   +YTV+I ALC++ +  EA   F EM   
Sbjct: 279 NLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEK 338

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C+ +V TYT LI   C+    D   +IL+ M+++G++P+ +TY  ++  + KK      
Sbjct: 339 HCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASA 398

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           +E++  M    C P+   YN +I   C+   + +A+++ ++M    L P   ++ +++HG
Sbjct: 399 LEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHG 458

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
              +G L  A +    M   GL+  P   T    +++L +   VE A+ ++  +  KG +
Sbjct: 459 QCKEGDLGSAYKLLSLMNESGLV--PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIK 516

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLD-MMDADVMPQPDTFAKLMRG 569
            N   ++  I      G V +   + LD M+ A  +P   T+  L+ G
Sbjct: 517 ANEVIYSTLIDGYCKVGKVSDG-RFLLDKMLSAGCVPNSITYNSLIDG 563



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 202/438 (46%), Gaps = 14/438 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI--LMRRFASARMVKKAIEVLD 198
           Y  L+  LS+      + ++  EM  +   ++T  +F +  ++  +     V +A   + 
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDD---MVTPNIFTLNTMVNGYCKLGNVVEAELYVS 228

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH---FTSLLYGWCK 255
           ++ + G   D F +  L+   C+N +V  A  +F  M    K  LR+   +T+L++G+C+
Sbjct: 229 KIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPN--KGCLRNEVSYTNLIHGFCE 286

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             ++ EA  +  QM +    P +  Y  ++    Q+G+ T+A  + KEM  K C PN ++
Sbjct: 287 ARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHT 346

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           YTVLI +LC     ++A +    M   G    VVTY  LI G+CK        EIL  M 
Sbjct: 347 YTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLME 406

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
                PN  TY  ++L   + + + + + L+ +M +    P+V  YN++I   CK G+L 
Sbjct: 407 SNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLG 466

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLK 494
            A  + + M  + L P   ++ V +     +G + EA   F+ +  +G+  +   Y TL 
Sbjct: 467 SAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTL- 525

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
             ++   +  KV   + +   +++ GC  N   +   I       + KEA      M+  
Sbjct: 526 --IDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKR 583

Query: 555 DVMPQPDTFAKLMRGLKK 572
           D+ P  DT+  L+  L K
Sbjct: 584 DIEPAADTYTILIDNLLK 601



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 202/444 (45%), Gaps = 48/444 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKK--AIEV 196
           Y  LI    + R+      L  +M ++   P + T  V +     FA  ++ +K  A+ +
Sbjct: 277 YTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVII-----FALCQLGRKTEALNM 331

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
             EM +  C+P+   +  L+ +LC++S+  +A K+ + M E+   PS+  + +L+ G+CK
Sbjct: 332 FKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCK 391

Query: 256 EGKLVEAKYVLVQMKD--------------AGF---------------------EPDIVV 280
           +G    A  +L  M+                GF                     +P++V 
Sbjct: 392 KGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVT 451

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN L+ G  + G +  A++LL  M   G  P+  +Y+V I  LC+   +EEA   F  ++
Sbjct: 452 YNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLK 511

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G +A+ V Y+TLI G+CK  K+     +LD M+  G +PN +TY  ++  + K++  +
Sbjct: 512 EKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFK 571

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E   L+  M K    P    Y ++I    K  E  +A +++++M +    P    +   +
Sbjct: 572 EARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFI 631

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           H +   G L +A     +M  +G++      TL   +++  R   ++ A  +   +   G
Sbjct: 632 HAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTL--FIDAYGRFGSIDGAFGILKRMHEVG 689

Query: 521 CELNVYAWTIWIHSLFSNGHVKEA 544
           CE + Y ++  I  L SN   KE 
Sbjct: 690 CEPSYYTYSCLIKHL-SNAKPKEV 712



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 182/408 (44%), Gaps = 38/408 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI    K+ K      L+++M      P  IT   +  L+  +   +  K+A  ++
Sbjct: 521 IYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSIT---YNSLIDGYCKEKNFKEARLLV 577

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           D M K   EP    +  L+D L K+    +A  +FD+M      P +  +T+ ++ +C  
Sbjct: 578 DIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSH 637

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G+L +A+ ++ +M   G  PD ++Y   +  Y + G +  AF +LK M   GC+P+  +Y
Sbjct: 638 GRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTY 697

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY--EILDSM 374
           + LI+ L   +  E ++ + +    SG  ++  +           R++D  +  ++   M
Sbjct: 698 SCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCW--------RRVDYEFTLDLFGKM 749

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
            + G  PN  TY   +    K   LE    L   M++ G  P+   YN ++  +C+LG  
Sbjct: 750 AEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLY 809

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG---------CLIEACEY-FKEMVGRGL 484
            EA+   + M      P  DS  +++ G   +G         C    CEY + EMV    
Sbjct: 810 GEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMV---- 865

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                    K L++ LL+    +   D++  + T+GC+++   +++ I
Sbjct: 866 --------WKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLI 905



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 114/294 (38%), Gaps = 37/294 (12%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y A I +     +      L+ +M  +   P  +   +F+    RF S   +  A  +L
Sbjct: 626 IYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGS---IDGAFGIL 682

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA---------------------------- 229
             M + GCEP  + + CL+  L  N+  KE +                            
Sbjct: 683 KRMHEVGCEPSYYTYSCLIKHL-SNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEF 741

Query: 230 --KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
              LF +M E    P+   +   + G CK G L  A  +   MK+ G  P+  +YN+LL 
Sbjct: 742 TLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLG 801

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              Q+G   +A   L  M      P+ +S  +L+  L      E+A R F    +     
Sbjct: 802 CSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNY 861

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
           D + +  LI G  K    D+C ++   M  +G   +  TY  ++   +  +E++
Sbjct: 862 DEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGFDGIQEID 915


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 214/433 (49%), Gaps = 22/433 (5%)

Query: 156 AVWALMEEMRKEKPQLITTEVFV-ILMRRFASARM--------------VKKAIEVLDEM 200
           ++  L++ + K K   +T  VF+ IL   F  ++               V K +E+ + M
Sbjct: 146 SLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRM 205

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
                 P  F++  L+D LCK   + +A +LFDEM   R  PSL  + +L+ G+CK G  
Sbjct: 206 KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNP 265

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            ++  V  +MK    EP ++ +N LL G  + G + DA  +LKEM+  G  P+A ++++L
Sbjct: 266 EKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSIL 325

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                  EK E A   +     SG + +  T + L++  CK  KI++  EIL   + +G+
Sbjct: 326 FDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGL 385

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +PN++ Y  ++  + +K +L      +  M K G  PD   YN +IR  C+LGE++ A  
Sbjct: 386 VPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEK 445

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC-EYFKEMVGRGLL-SAPQYGTLKALL 497
             N+M+   +SP  +++ +++ G+ G+    + C +  KEM   G + +   YGT   L+
Sbjct: 446 EVNKMKLKGVSPSVETYNILIGGY-GRKYEFDKCFDILKEMEDNGTMPNVVSYGT---LI 501

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N L +  K+  A+ V   +  +G    V  + + I    S G +++A  +  +M+   + 
Sbjct: 502 NCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIE 561

Query: 558 PQPDTFAKLMRGL 570
               T+  L+ GL
Sbjct: 562 LNLVTYNTLIDGL 574



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 192/432 (44%), Gaps = 45/432 (10%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI    K       + + E M+ +  +P LIT   F  L++    A MV+ A  VL
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLIT---FNTLLKGLFKAGMVEDAENVL 307

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            EM   G  PD F F  L D    N   + A  +++   +   K +    + LL   CKE
Sbjct: 308 KEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKE 367

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK+ +A+ +L +    G  P+ V+YN ++ GY + G +  A   ++ M ++G  P+  +Y
Sbjct: 368 GKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAY 427

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI+  C + +ME A +   +M+  G    V TY  LI G+ +  + D+C++IL  M  
Sbjct: 428 NCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMED 487

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G +PN                                   V +Y  +I   CK  +L E
Sbjct: 488 NGTMPN-----------------------------------VVSYGTLINCLCKGSKLLE 512

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKA 495
           A  V  +ME   +SP    + +++ G   +G + +A  + KEM+ +G+ L+   Y T   
Sbjct: 513 AQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNT--- 569

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L++ L    K+  A+D+   I  KG + +V+ +   I      G+V+   +   +M  + 
Sbjct: 570 LIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG 629

Query: 556 VMPQPDTFAKLM 567
           + P   T+  L+
Sbjct: 630 IKPTLKTYHLLI 641



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 174/391 (44%), Gaps = 47/391 (12%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V    +Y  +I    +          +E M K+  KP  +    +  L+RRF     
Sbjct: 387 PNEV----IYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLA---YNCLIRRFCELGE 439

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTS 248
           ++ A + +++M   G  P    +  L+    +     +   +  EM +    P++  + +
Sbjct: 440 MENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGT 499

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+   CK  KL+EA+ V   M+D G  P + +YN L+ G    GK+ DAF   KEM +KG
Sbjct: 500 LINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG 559

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            + N  +Y  LI  L    K+ EA    +E+ R G + DV TY +LISG+  +  + RC 
Sbjct: 560 IELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCI 619

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM------------------- 409
            + + M + GI P   TY H++++   KE +E    L GEM                   
Sbjct: 620 ALYEEMKRSGIKPTLKTY-HLLISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVH 678

Query: 410 ---------------RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
                          + IG   D + YN +I    K+G+L E  ++ +EM A  + P  D
Sbjct: 679 GDMEKAFNLQKQMIEKSIGL--DKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEAD 736

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           ++ ++V G       + A  +++EM  +G L
Sbjct: 737 TYNIIVKGHCEVKDYMSAYVWYREMQEKGFL 767



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 164/409 (40%), Gaps = 43/409 (10%)

Query: 212 FGCLLDALCKNSS--VKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           F  LL ++  N S  + EAA LF  +R E   PS    T LL    K  +      V + 
Sbjct: 110 FSYLLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLN 169

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           + ++ F P   +Y   +    ++  +    EL   M+     P+   Y VLI  LC+ ++
Sbjct: 170 ILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKR 229

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           M +A + F EM        ++TY TLI G+CK+   ++ +++ + M    I P+ +T+  
Sbjct: 230 MNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNT 289

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNY--------------------------- 421
           ++    K   +E+   ++ EM+ +G VPD   +                           
Sbjct: 290 LLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSG 349

Query: 422 --------NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
                   ++++   CK G++++A  +     A  L P    +  M+ G+  +G L+ A 
Sbjct: 350 VKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGAR 409

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
              + M  +G+   P +     L+       ++E A+   + +  KG   +V  + I I 
Sbjct: 410 MKIEAMEKQGM--KPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIG 467

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL---KKLYNRQIA 579
                    +      +M D   MP   ++  L+  L    KL   QI 
Sbjct: 468 GYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIV 516



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 151/355 (42%), Gaps = 45/355 (12%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILM---RRFASARMVK 191
           S + Y  LI    +  +F   + +++EM      P +++    +  +    +   A++VK
Sbjct: 458 SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVK 517

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           +      +M   G  P   ++  L+D  C    +++A +   EM ++  + +L  + +L+
Sbjct: 518 R------DMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLI 571

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G    GKL EA+ +L+++   G +PD+  YN+L+SGY   G +     L +EM+R G  
Sbjct: 572 DGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIK 631

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSG----------CEA-------------- 346
           P   +Y +LI +LC  E +E   R F EM              C A              
Sbjct: 632 PTLKTYHLLI-SLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQ 690

Query: 347 --------DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
                   D  TY +LI G  K  K+     ++D M  R + P   TY  I+  H + ++
Sbjct: 691 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKD 750

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
                    EM++ G + DV   N ++    +    KEA  V +EM    L   T
Sbjct: 751 YMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVT 805


>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Brachypodium distachyon]
          Length = 548

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 189/400 (47%), Gaps = 7/400 (1%)

Query: 92  ELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS-- 149
           E AL   G  L   L   V++R      L +R++ WAS+Q NY H    Y  +I +LS  
Sbjct: 93  EAALDALGAELTTPLVSDVMHRLRYEEKLAFRFFAWASQQDNYEHDQAAYNEVIDTLSGT 152

Query: 150 --KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
             K R+FG +  +++ M++ + + +  E  + ++R +    +            +    P
Sbjct: 153 RYKARQFGVLCDVLDHMKRHRTRSVPVEDLLAILRAYTEKHLTNLRKLAKKRRVRMRTPP 212

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267
           +      LLDA CK   V+EA  +F  ++ + + +   +  L +GWC+     +A  VL 
Sbjct: 213 ETDALNILLDAFCKCGMVREAETVFGRVKRKLQGNAETYNILFFGWCRARDPKKAMKVLE 272

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQALC 324
           +M      P+   Y   +  +   G +++A EL + MR +G     P A +Y+V+I AL 
Sbjct: 273 EMILMKHAPESFTYIAAIDSFCSAGLVSEAKELFEFMRTEGSSISSPTAKAYSVMIVALV 332

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           + ++M++      +M + GC  DV T+  LI G C   KID  Y +L+ M + G  P+ +
Sbjct: 333 KADRMDDCFELISDMIKLGCMPDVSTFKDLIEGMCLVDKIDTAYFVLEEMGKAGFPPDIV 392

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY   +      ++ ++ ++L   M +  C P V  YN+++ +  ++ E   A+++W EM
Sbjct: 393 TYNCFLEVLCNLQKADDALKLCERMIEAHCEPSVHTYNMLMVMFFQMREPHRALDIWLEM 452

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +        D++ +M+ G    G   +A     E++   +
Sbjct: 453 DKRGCRRAVDTYEIMIDGLFDCGRTEDATNLLDEVINHDM 492



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 126/305 (41%), Gaps = 47/305 (15%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           E + IL   +  AR  KKA++VL+EM      P+ F +   +D+ C    V EA +LF+ 
Sbjct: 249 ETYNILFFGWCRARDPKKAMKVLEEMILMKHAPESFTYIAAIDSFCSAGLVSEAKELFEF 308

Query: 235 MR------------------------ERFK---------------PSLRHFTSLLYGWCK 255
           MR                        +R                 P +  F  L+ G C 
Sbjct: 309 MRTEGSSISSPTAKAYSVMIVALVKADRMDDCFELISDMIKLGCMPDVSTFKDLIEGMCL 368

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             K+  A +VL +M  AGF PDIV YN  L     + K  DA +L + M    C+P+ ++
Sbjct: 369 VDKIDTAYFVLEEMGKAGFPPDIVTYNCFLEVLCNLQKADDALKLCERMIEAHCEPSVHT 428

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y +L+    +M +   A   ++EM++ GC   V TY  +I G     + +    +LD +I
Sbjct: 429 YNMLMVMFFQMREPHRALDIWLEMDKRGCRRAVDTYEIMIDGLFDCGRTEDATNLLDEVI 488

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
              +  +   +  IML       L     L   MRK         YNV +     + + K
Sbjct: 489 NHDMKLSYKKFDAIMLQLSAVGNLGAIHRLSEHMRKF--------YNVAMSRRFSITQKK 540

Query: 436 EAVNV 440
           +++ +
Sbjct: 541 KSIGM 545


>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
 gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
          Length = 540

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 142/513 (27%), Positives = 228/513 (44%), Gaps = 21/513 (4%)

Query: 63  THGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGY 122
           THG   +   + +++ + L  FHS  P+ +L +  S   L  GL         D+G +  
Sbjct: 41  THGIILKALCERKEVDQALSYFHSVSPRSDLDVV-SYTTLIMGL--------ADSGRIDV 91

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVIL 180
              ++     +       Y A+I +L K  +     A  E M  RK  P L T   F ++
Sbjct: 92  ACELFEEMSSSGSQCVVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRT---FTVV 148

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-F 239
           +     A  + +A EV  EM + G +PD  V+  L+D L K S + EA KL  E+  R  
Sbjct: 149 ITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGM 208

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           KP+   +TS + G CK G++ EA  ++ +M   G      V + +  GY   GK+ +A  
Sbjct: 209 KPTEVTYTSFISGLCKNGRVEEAGKLVREM---GKMCAAEVLHCIFGGYVLEGKIEEALT 265

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L  EM +KG   +   YT LI  L  + + +EA   F  M R GC  D  TY  ++S FC
Sbjct: 266 LKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFC 325

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  K+    ++++ M   G+  N   Y  +M          E + +   M +    P + 
Sbjct: 326 KQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAINVYSTMLRKMVKPSIV 385

Query: 420 NYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
            YN+++   CKLG+  +A  V  EM E   + P   S+  ++HG    G   EA + F E
Sbjct: 386 TYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTE 445

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           MV  G++  P   +  +L+ +L  A +++ A  +   +   G   +  A+   +  L   
Sbjct: 446 MVDNGVV--PDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAYNALVKVLCGG 503

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
             V  A    ++MMD   +P   TF  +  G K
Sbjct: 504 AKVGPAWDVLVEMMDNSCVPDGSTFRAMKLGFK 536



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 184/395 (46%), Gaps = 6/395 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           I++R    A    +A E+L EM   G +  +   G +L ALC+   V +A   F  +  R
Sbjct: 9   IVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSYFHSVSPR 68

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
               +  +T+L+ G    G++  A  +  +M  +G +  +V Y  +++   +  +   A 
Sbjct: 69  SDLDVVSYTTLIMGLADSGRIDVACELFEEMSSSGSQC-VVAYTAIINALFKAHRPDQAI 127

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
              + M  + CDP+  ++TV+I  LC+  K+  A   F EM R G + D++ YT+L+ G 
Sbjct: 128 ACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGL 187

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            K+  +D   ++L  ++ RG+ P ++TY   +    K   +EE  +L+ EM K+ C  +V
Sbjct: 188 SKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKM-CAAEV 246

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
              + +       G+++EA+ + +EM    ++     +  ++HG        EA E F+ 
Sbjct: 247 --LHCIFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEA 304

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           MV +G +  P   T   +++   +  K++ A  V   +   G E N + +   +      
Sbjct: 305 MVRQGCV--PDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGV 362

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
              +EA +    M+   V P   T+  LM GL KL
Sbjct: 363 NRAREAINVYSTMLRKMVKPSIVTYNILMLGLCKL 397



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 148/343 (43%), Gaps = 42/343 (12%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D+  YN ++ G    G+ + A+ELLKEM   G   +  ++ ++++ALC  +++++A   F
Sbjct: 3   DVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSYF 62

Query: 337 VEME-RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ--LTYLHIMLAH 393
             +  RS  + DVV+YTTLI G   S +ID   E+ + M   G   +Q  + Y  I+ A 
Sbjct: 63  HSVSPRS--DLDVVSYTTLIMGLADSGRIDVACELFEEMSSSG---SQCVVAYTAIINAL 117

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K    ++ +     M    C PD+  + VVI   CK G+L  A  V+ EM      P  
Sbjct: 118 FKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDI 177

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE------ 507
             +  +V G      + EA +  +E+V RG+   P   T  + ++ L +  +VE      
Sbjct: 178 IVYTSLVDGLSKASMMDEARKLLQEIVSRGM--KPTEVTYTSFISGLCKNGRVEEAGKLV 235

Query: 508 ------MAKDVWSCI--------------------VTKGCELNVYAWTIWIHSLFSNGHV 541
                  A +V  CI                    V KG  L+V  +T  IH LF     
Sbjct: 236 REMGKMCAAEVLHCIFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRN 295

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
            EA      M+    +P   T+  ++    K    Q A ++ E
Sbjct: 296 DEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAACKVVE 338


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/507 (25%), Positives = 240/507 (47%), Gaps = 9/507 (1%)

Query: 70  FSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
           F H  V ++ R++++  +   KLE  L+     L+P     V+    D   +   ++ WA
Sbjct: 68  FRHPLVREVCRLIERRSAWNAKLEGDLRRLLRSLKPRQVCAVLQLQSDE-RIALDFFYWA 126

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKF-GAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
            +Q  Y H   VY  +++ LSK +   GA   L   +R+   +    E F  +M  ++ A
Sbjct: 127 GRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIAR--RPEAFAHVMVSYSRA 184

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHF 246
             ++ A++VL  M K G EP+  +    +  L   + +++A +  + M+     P++  +
Sbjct: 185 GKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTY 244

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
             L+ G+C   ++  A  ++ +M   G  PD V Y  ++    Q  ++ +   L+++M +
Sbjct: 245 NCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVK 304

Query: 307 KG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
                P+  +Y  L+  L +    +EA     E E  G + D V Y+ +++ FC   ++D
Sbjct: 305 DNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMD 364

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           R  EI++ MI +G  P+ +TY  ++    K  ++EE  +++ +M K GC P+  +Y  ++
Sbjct: 365 RAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALL 424

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              C+ G   EA  + N  E    +P   ++ V++HG   +G L EAC+  +EM+ +G  
Sbjct: 425 NGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFF 484

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P    +  L+ SL   QK+  AK      + +GC +N   +T  IH    + ++  A 
Sbjct: 485 PTPV--EINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTAL 542

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKK 572
           S   DM   +  P   TF  ++  L K
Sbjct: 543 SLLDDMYLNNKHPDAVTFTAIIDALGK 569



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 184/377 (48%), Gaps = 7/377 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  L++ +     V+ A+E++ EMP  GC PD+  +  ++  LC++  +KE 
Sbjct: 239 PNVVT---YNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEV 295

Query: 229 AKLFDEMRERFK--PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
             L ++M +  K  P    + +L++   K G   EA   L + ++ GF+ D V Y+ +++
Sbjct: 296 RNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVN 355

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            +   G+M  A E++ EM  KGC P+  +YT ++  LC++ K+EEA +   +M + GC+ 
Sbjct: 356 SFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKP 415

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + V+YT L++G C+        E++++  +    PN +TY  +M    ++ +L E  +++
Sbjct: 416 NTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVV 475

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM   G  P     N++I+  C   ++ EA     E      +    +F  ++HGF   
Sbjct: 476 REMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQS 535

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
             +  A     +M        P   T  A++++L +  ++E A      ++ KG +    
Sbjct: 536 DNIDTALSLLDDMYLNN--KHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPV 593

Query: 527 AWTIWIHSLFSNGHVKE 543
            +   IH     G V+E
Sbjct: 594 TYRAVIHQYCKMGRVEE 610



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 2/309 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+  LSK          + E  +   Q+       I+       RM  +A E+++EM
Sbjct: 315 YNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRM-DRAKEIVNEM 373

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              GC PD   +  +++ LCK   V+EA K+  +M +   KP+   +T+LL G C+ G  
Sbjct: 374 ITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNS 433

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           +EA+ ++   ++  + P+ + Y+ ++ G  + GK+++A ++++EM  KG  P      +L
Sbjct: 434 LEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLL 493

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I++LC  +KM EA +   E    GC  + V +TT+I GFC+S  ID    +LD M     
Sbjct: 494 IKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNK 553

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +T+  I+ A  KK  +EE      +M K G  P    Y  VI   CK+G ++E + 
Sbjct: 554 HPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIK 613

Query: 440 VWNEMEAAS 448
           +  +M + S
Sbjct: 614 LLGKMLSRS 622


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 221/486 (45%), Gaps = 38/486 (7%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S+  Y  ++  L++        AL   M        TT  F +  R         +A+ +
Sbjct: 138 SFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALAL 197

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L  M ++GC PD  ++  ++ ALC    V EAA L +EM        +  F  ++ G C 
Sbjct: 198 LRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCG 257

Query: 256 EGKLVEAKYVLVQMKDAGFEP-------------------------------DIVVYNNL 284
            G++ EA  ++ +M   G  P                               ++V++N +
Sbjct: 258 LGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV 317

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G    GK+ +A EL + M  KGC P+A++Y++L+  LC++ ++  A R   EME+ G 
Sbjct: 318 IGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGF 377

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             +VVTYT ++  FCK+   D    +L+ M  +G+  N   Y  ++ A  K   ++E + 
Sbjct: 378 APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMG 437

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW-NEMEAASLSPGTDSFVVMVHGF 463
           L+ EMR  GC PD+ +YN +I   C   +++EA +++ N +E   ++ G  ++  ++H  
Sbjct: 438 LIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI-TYNTIIHAL 496

Query: 464 LGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           L  G   +A    KEM+  G  L    Y     L+ ++ +   V+ +  +   +  KG +
Sbjct: 497 LRDGRWQDAVRLAKEMILHGCSLDVVSY---NGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N  ++ I I  L     V++A      M++  + P   T+  L+ GL K+     A  +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 583 TEKVRK 588
            EK+  
Sbjct: 614 LEKLHN 619



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 169/356 (47%), Gaps = 41/356 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L++ L ++R+     A++  +    P+L       ++    A  ++ + A E+ + M
Sbjct: 283 YGFLLQGLCRVRQADEARAMLGRV----PELNVVLFNTVIGGCLAEGKLAE-ATELYETM 337

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              GC+PD   +  L+  LCK   +  A +L  EM ++ F P++  +T +L+ +CK G  
Sbjct: 338 GLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMW 397

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            + + +L +M   G   +   YN ++    + G+M +A  L++EMR +GC+P+  SY  +
Sbjct: 398 DDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTI 457

Query: 320 IQALCRMEKMEEANRAF-----------------------------------VEMERSGC 344
           I  LC  E+MEEA   F                                    EM   GC
Sbjct: 458 IYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGC 517

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             DVV+Y  LI   CK   +DR   +L+ M ++GI PN ++Y  ++    K+  + + +E
Sbjct: 518 SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALE 577

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           L  +M   G  PD+  YN +I   CK+G +  A+N+  ++   ++ P   ++ +++
Sbjct: 578 LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 180/391 (46%), Gaps = 34/391 (8%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK------------ 221
              F  ++R       V++A  ++D M   GC P    +G LL  LC+            
Sbjct: 245 VNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLG 304

Query: 222 -------------------NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
                                 + EA +L++ M  +  +P    ++ L++G CK G++  
Sbjct: 305 RVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISS 364

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A  +L +M+  GF P++V Y  +L  + + G   D   LL+EM  KG   N+  Y  +I 
Sbjct: 365 AVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIY 424

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           ALC+  +M+EA     EM   GC  D+ +Y T+I   C + +++    + +++++ G++ 
Sbjct: 425 ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVA 484

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N +TY  I+ A  +    ++ V L  EM   GC  DV +YN +I+  CK G +  ++ + 
Sbjct: 485 NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLL 544

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM    + P   S+ +++     +  + +A E  K+M+ +GL  AP   T   L+N L 
Sbjct: 545 EEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGL--APDIVTYNTLINGLC 602

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
           +   +  A ++   +  +    ++  + I I
Sbjct: 603 KMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 184/383 (48%), Gaps = 11/383 (2%)

Query: 192 KAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTS 248
           +A+ +LD++P+ +G +P    +  +L  L +     +A  L+  M  R+R  P+   F  
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
                C+ G+  EA  +L  M   G  PD V+Y  ++      G +T+A  LL EM   G
Sbjct: 181 AARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG 240

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  + N++  +++ +C + ++ EA R    M   GC   V+TY  L+ G C+ R+ D   
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEAR 300

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  + +  ++    T +   LA  K  E  E  E MG     GC PD   Y++++   
Sbjct: 301 AMLGRVPELNVVLFN-TVIGGCLAEGKLAEATELYETMGLK---GCQPDAHTYSILMHGL 356

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSA 487
           CKLG +  AV +  EME    +P   ++ +++H F   G   +     +EM  +GL L++
Sbjct: 357 CKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 416

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
             Y     ++ +L +  +++ A  +   + ++GC  ++ ++   I+ L +N  ++EA   
Sbjct: 417 QGY---NGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473

Query: 548 CLDMMDADVMPQPDTFAKLMRGL 570
             ++++  V+    T+  ++  L
Sbjct: 474 FENLLEEGVVANGITYNTIIHAL 496



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 156/320 (48%), Gaps = 10/320 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+  H+Y +   L+  L K+ +  +   L+ EM K+   P ++T   + I++  F    
Sbjct: 343 QPD-AHTYSI---LMHGLCKLGRISSAVRLLREMEKKGFAPNVVT---YTIVLHSFCKNG 395

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           M      +L+EM   G   +   +  ++ ALCK+  + EA  L  EMR +   P +  + 
Sbjct: 396 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 455

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++Y  C   ++ EA+++   + + G   + + YN ++    + G+  DA  L KEM   
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC  +  SY  LI+A+C+   ++ +     EM   G + + V+Y  LIS  CK R++   
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 575

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+   M+ +G+ P+ +TY  ++    K   +   + L+ ++      PD+  YN++I  
Sbjct: 576 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 635

Query: 428 ACKLGELKEAVNVWNEMEAA 447
            CK+  L +A  + N   AA
Sbjct: 636 HCKVRLLDDAAMLLNRAMAA 655



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 16/297 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  ++ S  K   +    AL+EEM  +   L +     ++       RM  
Sbjct: 379 PNVV----TYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM-D 433

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLL 250
           +A+ ++ EM   GC PD   +  ++  LC N  ++EA  +F+ +  E    +   + +++
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
           +   ++G+  +A  +  +M   G   D+V YN L+    + G +  +  LL+EM  KG  
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  SY +LI  LC+  ++ +A     +M   G   D+VTY TLI+G CK   +     +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM----------GEMRKIGCVPD 417
           L+ +    + P+ +TY  ++  H K   L++   L+          G+ R +  +PD
Sbjct: 614 LEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPD 670


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 196/407 (48%), Gaps = 8/407 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  L+ +++KM KF  V +L E+M+       L T  +F+     F     +  A+ VL 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI---NCFCRRSQLSLALAVLA 142

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K G EPD      LL+  C +  + +A  L D+M E  +KP    FT+L++G     
Sbjct: 143 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN 202

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K  EA  ++ QM   G +PD+V Y  +++G  + G +  A  LL +M       N   + 
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I +LC+   +E A   F EME  G   +VVTY +LI+  C   +      +L +M+++
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK 322

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +T+  ++ A  K+ +L E  +L  EM +    PD   YN++I   C    L EA
Sbjct: 323 KINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA 382

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++  M +    P   ++  +++GF     + +  E F+EM  RGL+      T   ++
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTV--TYTTII 440

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
               +A   + A+ V+  +V+     ++  ++I +H L S G +  A
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTA 487



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 220/489 (44%), Gaps = 20/489 (4%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKA 193
           H    Y   I    +  +     A++ +M K   +P ++T      L+  +  ++ +  A
Sbjct: 116 HDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS---LLNGYCHSKRISDA 172

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           + ++D+M + G +PD F F  L+  L  ++   EA  L D+M +R  +P L  + +++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
            CK G +  A  +L +M+ A  + ++V++N ++    +   +  A +L  EM  KG  PN
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y  LI  LC   +  +A+R    M       +VVT+  LI  F K  K+    ++ +
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MIQR I P+ +TY  ++        L+E  ++   M    C+P++  YN +I   CK  
Sbjct: 353 EMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCK 412

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            +++ V ++ EM    L   T ++  ++ GF   G    A   FK+MV   +       T
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRV--PTDIMT 470

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS-YCLDM 551
              LL+ L    K++ A  ++  +     ELN++ +   I  +   G V EA   +C   
Sbjct: 471 YSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFC--- 527

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI----TFKMYKRRGERD 607
               + P   T+  ++ G   L ++++  E  +  RKM  +  +    T+    R   RD
Sbjct: 528 -SLSIKPDVVTYNTMISG---LCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRD 583

Query: 608 LKEKAKKQV 616
               A  ++
Sbjct: 584 CDRAASAEL 592



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 185/393 (47%), Gaps = 3/393 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL  R +    V  A+++  +M K    P    F  LL A+ K +  +    L ++M+  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
                L  ++  +  +C+  +L  A  VL +M   G+EPDIV  ++LL+GY    +++DA
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
             L+ +M   G  P+  ++T LI  L    K  EA     +M + GC+ D+VTY T+++G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK   ID    +L+ M    I  N + +  I+ +  K   +E  V+L  EM   G  P+
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  YN +I   C  G   +A  + + M    ++P   +F  ++  F  +G L+EA +  +
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           EM+ R +   P   T   L+N      +++ AK ++  +V+K C  N+  +   I+    
Sbjct: 353 EMIQRSI--DPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCK 410

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              V++      +M    ++    T+  +++G 
Sbjct: 411 CKRVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 175/388 (45%), Gaps = 38/388 (9%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y  ++  L K         L+ +M   + +     +F  ++      R V
Sbjct: 220 QPDLV----TYGTVVNGLCKRGDIDLALNLLNKMEAARIK-ANVVIFNTIIDSLCKYRHV 274

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           + A+++  EM   G  P+   +  L++ LC      +A++L   M E+   P++  F +L
Sbjct: 275 EVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNAL 334

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + KEGKLVEA+ +  +M     +PD + YN L++G+    ++ +A ++ K M  K C
Sbjct: 335 IDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y  LI   C+ +++E+    F EM + G   + VTYTT+I GF ++   D    
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQM 454

Query: 370 ILDSMIQRGILPNQLTY---LH------------IMLAHEKKEELE-------ECVELMG 407
           +   M+   +  + +TY   LH            ++  + +K E+E         +E M 
Sbjct: 455 VFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMC 514

Query: 408 EMRKIG------CV----PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +  K+G      C     PDV  YN +I   C    L+EA +++ +M+     P + ++ 
Sbjct: 515 KAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYN 574

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            ++   L       + E  KEM   G +
Sbjct: 575 TLIRANLRDCDRAASAELIKEMRSSGFV 602



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 139/300 (46%), Gaps = 13/300 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     + ALI +  K  K      L EEM  R   P  IT   + +L+  F    
Sbjct: 325 NPNVV----TFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTIT---YNLLINGFCMHN 377

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + +A ++   M    C P+   +  L++  CK   V++  +LF EM +R    +   +T
Sbjct: 378 RLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYT 437

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++ G+ + G    A+ V  QM       DI+ Y+ LL G    GK+  A  + K +++ 
Sbjct: 438 TIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKS 497

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
             + N   Y  +I+ +C+  K+ EA   F  +     + DVVTY T+ISG C  R +   
Sbjct: 498 EMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEA 554

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++   M + G LPN  TY  ++ A+ +  +     EL+ EMR  G V D S  ++V  +
Sbjct: 555 DDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNM 614



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 5/194 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARM 189
           Q   V +   Y  +I+   +     +   + ++M   + P  I T  + IL+    S   
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMT--YSILLHGLCSYGK 483

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
           +  A+ +   + K   E + F++  +++ +CK   V EA  LF  +    KP +  + ++
Sbjct: 484 LDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS--IKPDVVTYNTM 541

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G C +  L EA  +  +MK+ G  P+   YN L+    +      + EL+KEMR  G 
Sbjct: 542 ISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGF 601

Query: 310 DPNANSYTVLIQAL 323
             +A++ +++   L
Sbjct: 602 VGDASTISLVTNML 615


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 187/391 (47%), Gaps = 7/391 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L+ +L K  K G V  + +EM K +        F I +     A  + KA + +++M  +
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIH-TNLNTFNIFINGLCRAGKLNKAEDAIEDMKAW 229

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLYGWCKEGKL 259
           G  P+   +  L+D  CK  S  +  K    M+E    +  P+   F +L+ G+CK+  +
Sbjct: 230 GISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENV 289

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             AK    +M+  G +P+IV YN+L++G    GK+ +A +L  +M   G  PN  +Y  L
Sbjct: 290 AAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNAL 349

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+ + M+EA + F ++ +     +V+T+ T+I  +CK   ++  + +  SM+  GI
Sbjct: 350 INGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGI 409

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           LPN  TY  ++    +K++L+   EL+ EM   G   DV  YN++I   CK  + + A  
Sbjct: 410 LPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEK 469

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           + NEM    L P   ++  ++ G+  +G L  A      M        P   T   L+  
Sbjct: 470 LLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER--KQPNVVTYNVLIKG 527

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
             +  K+E A  + + ++ KG   N   + I
Sbjct: 528 YCKINKLEAANGLLNEMLEKGLNPNRTTYDI 558



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 170/343 (49%), Gaps = 13/343 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVW---ALMEEMRKEK--PQLITTEVFVILMRRFA 185
            PN V     Y  L+    K    G ++   A M+EM   K  P  +T   F  L+  F 
Sbjct: 232 SPNVV----TYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVT---FNTLIDGFC 284

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLR 244
               V  A +  +EM K G +P+   +  L++ LC N  ++EA  L+D+M     KP++ 
Sbjct: 285 KDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIV 344

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            + +L+ G+CK+  + EA  V   +      P+++ +N ++  Y + G M + F L   M
Sbjct: 345 TYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSM 404

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
             +G  PN ++Y  LI  LCR + ++ A     EME  G + DVVTY  LI G CK+ K 
Sbjct: 405 LDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKS 464

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
               ++L+ M   G+ PN +TY  +M  +  + +L+  + +   M K    P+V  YNV+
Sbjct: 465 RNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVL 524

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           I+  CK+ +L+ A  + NEM    L+P   ++ ++    L +G
Sbjct: 525 IKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKG 567



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 208/476 (43%), Gaps = 31/476 (6%)

Query: 101 VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWAL 160
           V +P      +   G    L  R++ W+ K+    +  +    ++  L+  +++  V + 
Sbjct: 41  VTKPATFLDQLLNAGVDSELVLRFFKWSQKEYRLSYGLEPTSKVLHFLANSKRYSKVRSF 100

Query: 161 MEEMRKEKPQLITTEVFVILM---RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           ++   K +   +++    +L+   R  A+A                       +   L+ 
Sbjct: 101 LDSFVKNEKHTVSSVFHSLLLDGGRPGATA----------------------LIIDMLVL 138

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           A  KN  +  A + F   ++  FK SL     LL    KE K+ + +YV  +M       
Sbjct: 139 AYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHT 198

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR---MEKMEEAN 333
           ++  +N  ++G  + GK+  A + +++M+  G  PN  +Y  L+   C+     KM +A 
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               EM  +    + VT+ TLI GFCK   +    +  + M ++G+ PN +TY  ++   
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGL 318

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
               +LEE ++L  +M  +G  P++  YN +I   CK   +KEA  V++++    L P  
Sbjct: 319 CNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNV 378

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            +F  M+  +  +G + E       M+  G+L  P   T   L+  L R Q ++ AK++ 
Sbjct: 379 ITFNTMIDAYCKEGMMEEGFSLCSSMLDEGIL--PNVSTYNCLIAGLCRKQDLQAAKELL 436

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           + +  KG + +V  + I I  L  N   + A     +M +  + P   T+  LM G
Sbjct: 437 NEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDG 492



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 163/397 (41%), Gaps = 54/397 (13%)

Query: 203 YGCEPDEFVFGCL------------LDALCKNSSVKEAAKLFDEMRERFKPSLRHFT--S 248
           YG EP   V   L            LD+  KN     ++     + +  +P         
Sbjct: 76  YGLEPTSKVLHFLANSKRYSKVRSFLDSFVKNEKHTVSSVFHSLLLDGGRPGATALIIDM 135

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  + K  +L  A     + KD GF+  +   N LLS   +  K+ D   + KEM ++ 
Sbjct: 136 LVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRR 195

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
              N N++ + I  LCR  K+ +A  A  +M+  G   +VVTY TL+ G+CK     + Y
Sbjct: 196 IHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMY 255

Query: 369 E---ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +    +  M+   I PN++T+                                   N +I
Sbjct: 256 KAEAFMKEMLANKICPNEVTF-----------------------------------NTLI 280

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK   +  A   + EM+   L P   ++  +++G    G L EA + + +MVG GL 
Sbjct: 281 DGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGL- 339

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  AL+N   + + ++ A  V+  +  +    NV  +   I +    G ++E  
Sbjct: 340 -KPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           S C  M+D  ++P   T+  L+ GL +  + Q A E+
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKEL 435


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 207/428 (48%), Gaps = 5/428 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK           + L  +M  E+  L++T  F ++++     +  K AI +L+ +
Sbjct: 329 YGVLIKGCDAEGMSDETYKLCRQM-IEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELV 387

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  PD F +GCL+  LCK+  + EA  L+D+M+E   KPS+  + SLL G+C++G++
Sbjct: 388 VDTGV-PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRM 446

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M D GF P+ V Y  L+ GY +     +A+ LL EMR+ G      +Y +L
Sbjct: 447 DEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNIL 506

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L  + ++ E +         G     +TY ++I+GF K+  +   + +   M ++GI
Sbjct: 507 INGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGI 566

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +TY   +  + +    +  V+L+  +R+ G  PD++ YN  I   CK G +  A++
Sbjct: 567 TPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALH 626

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
               +    L+P    +   V G+     + EA +++  M+ + +++  +  T   L++ 
Sbjct: 627 FLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYT--TLIDG 684

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +   V  A +++S ++      +   +T   H L  +G +  A     DM   DV P 
Sbjct: 685 FSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPN 744

Query: 560 PDTFAKLM 567
             T+  L+
Sbjct: 745 IVTYNMLI 752



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 152/329 (46%), Gaps = 6/329 (1%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  L+K   K + F   +AL+ EMR+          + IL+        V 
Sbjct: 463 PNEV----TYTTLMKGYIKKKAFDNAYALLNEMRQNGVS-CGDYTYNILINGLYMVNRVC 517

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +  E+L      G  P    +  +++   K   +  A  ++ +MR++   P++  +TS +
Sbjct: 518 EVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFI 577

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+C+      A  +L+ ++  G +PDI  YN  +  + + G M+ A   L  + + G  
Sbjct: 578 DGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLT 637

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+   Y   +     ++ M EA++ +  M +    AD   YTTLI GF K   +    E+
Sbjct: 638 PDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALEL 697

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              M+   ++P+  T+  +     +  +++    L+ +MR++   P++  YN++I    +
Sbjct: 698 YSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVR 757

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            G+L+EA  + +EM ++ + P   ++ ++
Sbjct: 758 DGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 184/401 (45%), Gaps = 9/401 (2%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T++ V   R  ++A     A+ + DEM   GC  D  ++  ++ A  +     +A +LFD
Sbjct: 154 TDLLVTTARGASAA----DALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFD 209

Query: 234 EMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           EM     KP  R +   + G CK      A  VL +M++AGFEP  + Y++++    ++G
Sbjct: 210 EMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVG 269

Query: 293 KMTDAFELLKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           +M +A  L  +M    G   +    T+L+   C   ++ +A   F E+   G     VTY
Sbjct: 270 RMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTY 329

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             LI G       D  Y++   MI++G+L +   +  ++    + +  ++ + L+  +  
Sbjct: 330 GVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVD 389

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G VPDV  Y  +I   CK  +L EAVN+W++M+ A + P   ++  ++ G+  +G + E
Sbjct: 390 TG-VPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDE 448

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A + + EM  +G    P   T   L+   ++ +  + A  + + +   G     Y + I 
Sbjct: 449 ALKLYSEMPDKGF--PPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNIL 506

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           I+ L+    V E        +    +P   T+  ++ G  K
Sbjct: 507 INGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVK 547



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 161/383 (42%), Gaps = 41/383 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K +K      L ++M++   KP ++T   +  L+  +     + +A+++  
Sbjct: 398 YGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVT---YHSLLLGYCEKGRMDEALKLYS 454

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR---------------------- 236
           EMP  G  P+E  +  L+    K  +   A  L +EMR                      
Sbjct: 455 EMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVN 514

Query: 237 --------------ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                         E F P+   + S++ G+ K G +  A  +  QM+  G  P+IV Y 
Sbjct: 515 RVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYT 574

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           + + GY +      A +LL  +RR G  P+  +Y   I   C+   M  A    V + + 
Sbjct: 575 SFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKD 634

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   DV  Y + ++G+   + +    +   SMI++ ++ +   Y  ++    K   +   
Sbjct: 635 GLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFA 694

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           +EL  EM     +PD   +  +    C+ G++  A  + ++M    +SP   ++ ++++ 
Sbjct: 695 LELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINA 754

Query: 463 FLGQGCLIEACEYFKEMVGRGLL 485
            +  G L EA +   EM+  G++
Sbjct: 755 CVRDGKLQEAFQLHDEMLSSGVV 777



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 184/422 (43%), Gaps = 44/422 (10%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L +EMR  K      +++ +++R      M   A+ + DEM   G +PDE V+   +  L
Sbjct: 172 LFDEMRG-KGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGL 230

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPD 277
           CK      A ++  +MRE  F+P    ++S++    K G++ EA  +  QM  A G + D
Sbjct: 231 CKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMD 290

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA------------LCR 325
           +V+   L+ GY   G++  A +L  E+   G  P   +Y VLI+             LCR
Sbjct: 291 VVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCR 350

Query: 326 M----------------------EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
                                  +K  +     +E+       DV TY  LI   CK +K
Sbjct: 351 QMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQK 410

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +     + D M + G+ P+ +TY  ++L + +K  ++E ++L  EM   G  P+   Y  
Sbjct: 411 LHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTT 470

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +++   K      A  + NEM    +S G  ++ ++++G      + E  E  K  +  G
Sbjct: 471 LMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEG 530

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            +  P   T  +++N  ++A  +  A  ++  +  KG   N+  +T +I     +G+ + 
Sbjct: 531 FV--PTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFI-----DGYCRT 583

Query: 544 AC 545
            C
Sbjct: 584 NC 585



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 4/303 (1%)

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           +M   G  PD     +LL   A+     DA  L  EMR KGC  +A  Y V+I+A  R  
Sbjct: 140 RMVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGG 199

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
              +A R F EM  +G + D   Y   ISG CK R  DR  ++L  M + G  P +LTY 
Sbjct: 200 MHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYS 259

Query: 388 HIMLAHEKKEELEECVELMGEM-RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
            ++    K   ++E + L  +M    G   DV    +++   C  GE+ +A+++++E+ +
Sbjct: 260 SVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVS 319

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             ++P   ++ V++ G   +G   E  +  ++M+ +GLL +     L  ++  LLR ++ 
Sbjct: 320 DGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNL--VIKGLLRDKRW 377

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
           + A  +   +V  G   +V+ +   IH L  +  + EA +    M +A V P   T+  L
Sbjct: 378 KDAIGLLELVVDTGVP-DVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSL 436

Query: 567 MRG 569
           + G
Sbjct: 437 LLG 439


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 203/439 (46%), Gaps = 40/439 (9%)

Query: 104 PGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE 163
           P +   VI R  +   +G ++  +     + +H +  Y  LI+SL +M     V  ++  
Sbjct: 59  PLVAFEVIKRLNNNPQVGLKFMEFCRLNFSLIHCFSTYELLIRSLCQMGLHDLVEMVIGY 118

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           MR +   LI + V   L+  FA A     A +++ E+         FV+  LL+ L K  
Sbjct: 119 MRSDG-HLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGG 177

Query: 224 SVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            V EA  LF E +     P+   F  L+ G C+ G++ +   +   M+  G  PD+V YN
Sbjct: 178 KVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYN 237

Query: 283 NLLSGYAQMGKMTDAFELLKEMR-RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
            L+SG  +  ++  A +LLKE++ R  C P+  +YT +I    ++ K+E A+  F EM R
Sbjct: 238 TLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIR 297

Query: 342 SG-----------------------------------CEADVVTYTTLISGFCKSRKIDR 366
           SG                                   C  DVVT+T+LI G+C++  I  
Sbjct: 298 SGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRL 357

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++ D M  R + PN  TY  I+ A  K   + E  +L+ +++     P    YN VI 
Sbjct: 358 GLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVID 417

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + EA  +  EME     P   +F +++ G   +G ++EA + FK+M+  G   
Sbjct: 418 GFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIG--C 475

Query: 487 APQYGTLKALLNSLLRAQK 505
           AP   T+ +L+  LL+A K
Sbjct: 476 APDNITISSLVACLLKAGK 494



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 152/339 (44%), Gaps = 40/339 (11%)

Query: 140 VYRALIKSLSKMRKFG-AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           VY  L+  L K  K   A++   E +    P    T  F IL+R       V+K  E+ +
Sbjct: 165 VYNYLLNELVKGGKVHEAIFLFKENLAFHSPP--NTWTFNILIRGLCRVGEVEKGFELFN 222

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKE 256
            M  +GC PD   +  L+  LCK + +  A  L  E++ R    P +  +TS++ G+ K 
Sbjct: 223 AMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKL 282

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC------- 309
           GKL  A  +  +M  +G EP +V +N L+ G+ ++G M  A  + ++M    C       
Sbjct: 283 GKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTF 342

Query: 310 ----------------------------DPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                                        PN  +Y+V+I ALC+  ++ EA     +++ 
Sbjct: 343 TSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKC 402

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           S        Y  +I GFCK+  +D    I+  M ++   P+++T+  +++ H  K  + E
Sbjct: 403 SDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVE 462

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
            +++  +M  IGC PD    + ++    K G+  EA ++
Sbjct: 463 ALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHI 501



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 171/368 (46%), Gaps = 8/368 (2%)

Query: 238 RFKPSLRHFTS----LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           R   SL H  S    L+   C+ G     + V+  M+  G   D  V   L++ +AQ GK
Sbjct: 84  RLNFSLIHCFSTYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGK 143

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
              A +L+ E++ +    ++  Y  L+  L +  K+ EA   F E        +  T+  
Sbjct: 144 FDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNI 203

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR-KI 412
           LI G C+  ++++ +E+ ++M   G LP+ +TY  ++    K  EL+   +L+ E++ + 
Sbjct: 204 LIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRN 263

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
            C PDV  Y  +I    KLG+L+ A  ++ EM  + + P   +F V++ GF   G ++ A
Sbjct: 264 DCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAA 323

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
               ++M     +  P   T  +L++   R   + +   VW  +  +    N+Y +++ I
Sbjct: 324 EAMHEKMASYSCI--PDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVII 381

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAA 591
           ++L  +  + EA      +  +DV P+P  +  ++ G  K  N   A  I TE   K   
Sbjct: 382 NALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCR 441

Query: 592 ERQITFKM 599
             ++TF +
Sbjct: 442 PDKVTFTI 449



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 121/236 (51%), Gaps = 6/236 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ++I    K+ K  A   L EEM +   +P ++T   F +L+  F     +  A  + +
Sbjct: 272 YTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVT---FNVLIDGFGKIGNMVAAEAMHE 328

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M  Y C PD   F  L+D  C+   ++   K++D M+ R   P++  ++ ++   CK+ 
Sbjct: 329 KMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDN 388

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+ +L Q+K +   P   +YN ++ G+ + G + +A  ++ EM  K C P+  ++T
Sbjct: 389 RIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFT 448

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           +LI   C   +M EA   F +M   GC  D +T ++L++   K+ K    + I+ +
Sbjct: 449 ILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHIVQT 504


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/536 (25%), Positives = 234/536 (43%), Gaps = 26/536 (4%)

Query: 73  DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
           D   I +I+++     PK    +  S   L P    RV+        L  +++ WA  + 
Sbjct: 67  DKASIIKIIQQDQWNDPKFVRFIDSS---LGPIWVSRVLVELKQDPKLALKFFRWAKTKF 123

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEM---RKEKPQLITTEV------------- 176
            +  + + Y  L+  L   R +      ++E+   R+  P     EV             
Sbjct: 124 GFCLTTESYCLLVHILFYARMYFDANFFLKELISSRRILPGFDVFEVLWSTRNVCVPGFG 183

Query: 177 -FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DE 234
            F  L   F    M+++A +    M ++   P        L  L K      + K F D 
Sbjct: 184 VFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDM 243

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +      S+  +  ++   CKEG +V AK +  QMK  G  PDIV YN+L+ GY ++G +
Sbjct: 244 VGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLL 303

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            ++F L +EM+  GC+P+  +Y  LI   C+ E+M +A     EM+ SG + +VVTY+TL
Sbjct: 304 DESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTL 363

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I   CK   + +  + L  M + G+ PN+ TY  ++ A+ K   L + ++L  EM ++  
Sbjct: 364 IDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQV 423

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             +V  Y  ++   CK G + EA +++  M  A ++P   ++  +VHG +    +  A E
Sbjct: 424 GFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALE 483

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
                  +     P       ++  L    K+E  + V S +   G   N   +TI + +
Sbjct: 484 --LLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDA 541

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            F  G   EA +   +M D  V     TF  L+ GL K   + +  E  +   +MA
Sbjct: 542 YFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCK---KGLVEEAIDYFARMA 594



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 217/463 (46%), Gaps = 9/463 (1%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASA 187
           KQ         Y +LI    K+      + L EEM+    +P +IT      L+  F   
Sbjct: 279 KQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNA---LINCFCKY 335

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHF 246
             + KA   L EM   G +P+   +  L+DALCK   +++A K   +MR     P+   +
Sbjct: 336 EQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTY 395

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           TSL+   CK G L +A  +  +M       ++V Y  LL G  + G+M +A +L + M +
Sbjct: 396 TSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIK 455

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  PN  +YT L+    + +++E A     E++    + D++ Y T+I G C   K++ 
Sbjct: 456 AGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEE 515

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
           C  ++  M   GI  N + Y   M A+ K  +  E + L+ EM  +G    +  + V+I 
Sbjct: 516 CEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLID 575

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE-YFKEMVGRGLL 485
             CK G ++EA++ +  M   +L P   +    +   L +   IEA +  F EM  + ++
Sbjct: 576 GLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMV 635

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P      AL++  L+ +  + A ++ S +   G EL+++A+T  +  L     V++A 
Sbjct: 636 --PDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQAR 693

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            +  +M+   ++P      +L+R   +L +   A E+ +++ K
Sbjct: 694 MFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLK 736



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 190/467 (40%), Gaps = 94/467 (20%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  +    +  + EM+    KP ++T   +  L+       M+++AI+ L 
Sbjct: 325 YNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVT---YSTLIDALCKEHMLQQAIKFLL 381

Query: 199 EMPKYGCEPDEFVFGCLLDA-----------------------------------LCKNS 223
           +M + G  P+EF +  L+DA                                   LCK  
Sbjct: 382 DMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEG 441

Query: 224 SVKEAAKLFDEM-RERFKPSLRHFTSLLYG------------------------------ 252
            + EA  LF  M +    P+L+ +T+L++G                              
Sbjct: 442 RMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYG 501

Query: 253 ---W--CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
              W  C + KL E ++V+ +MK  G   + V+Y   +  Y + GK  +A  LL+EM   
Sbjct: 502 TIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDL 561

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD-VVTYTTLISGFCKSRKIDR 366
           G +    ++ VLI  LC+   +EEA   F  M     + + V   T LI G CK+  I+ 
Sbjct: 562 GVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEA 621

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++ D M  + ++P+++ Y  ++  + K ++ +E + +   M ++G   D+  Y  ++ 
Sbjct: 622 AKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVW 681

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              +   +++A    NEM    + P     + ++  +   G + EA E   E++      
Sbjct: 682 GLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLK----- 736

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE----LNVYAWT 529
                  K  L+ LL  Q + M + +  C    G +      ++AWT
Sbjct: 737 -------KVPLDELLEEQNL-MPEKILRCRDGDGYDWKETCTMFAWT 775


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 4/345 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI+         A ++L+ EM  E  Q       +IL       R V +A+E  D  
Sbjct: 28  YNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGR-VAQALEHFDAS 86

Query: 201 PKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEG 257
            +    +PD   +  L++ LCK   V  A  LF +M      +P+   + +L+ G CK+ 
Sbjct: 87  LELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQD 146

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L  A+ V+ + +   F PD+V YN L++   Q+G++ +A     +M  +G  P   S+ 
Sbjct: 147 RLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFN 206

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I  LCR  ++ +A   F EM       ++VTY+ +I G CKS ++D   ++LD M+  
Sbjct: 207 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 266

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ + Y  ++L       L+  + L+  M   GC+PDV  Y VVI   CK+G + +A
Sbjct: 267 GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDA 326

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
             ++ E+ A   SP   ++  ++ G+     + E  +  +EM  R
Sbjct: 327 HEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR 371



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 169/359 (47%), Gaps = 10/359 (2%)

Query: 191 KKAIEVLDEMPKYGCE--PDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFT 247
            +A+++  E P   C+       +  L+   C  S +  A  L  EM  E  + + R  +
Sbjct: 8   NQALQLFRENP---CQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTS 64

Query: 248 SLLYGWCKEGKLVEA-KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM-R 305
            +L G C+ G++ +A ++    ++ A  +PD+V Y  L++G  ++G++  AF+L ++M  
Sbjct: 65  IILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVA 124

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC PNA +Y  L+  LC+ ++++ A     E  +     DVVTY TL++   +  ++D
Sbjct: 125 AGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVD 184

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
                   M + G +P  +++  I+    +   L + +E+  EM      P++  Y+VVI
Sbjct: 185 EALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVI 244

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              CK  +L EA  + + M +    P   ++  +V GF   G L  A    + MV +G +
Sbjct: 245 DGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCI 304

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             P   T   +++ L +  +V+ A +++  +V   C  NV  ++  I        V E 
Sbjct: 305 --PDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEG 361



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 153/328 (46%), Gaps = 37/328 (11%)

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM-PKYGCEPDEFVFGCLLDALCK 221
           E+   +P +++   +  L+        V  A ++  +M    GC P+ F +  L+D LCK
Sbjct: 88  ELAHAQPDVVS---YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCK 144

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
              +  A  +  E R+R F P +  + +L+    + G++ EA     QM + G+ P +V 
Sbjct: 145 QDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVS 204

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           +N +++G  +  ++ DA E+  EM  +   PN  +Y+V+I  LC+ ++++EA +    M 
Sbjct: 205 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV 264

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML--------- 391
             GC  D+V YT L+ GF  + ++D    +L  M+ +G +P+ +TY  ++          
Sbjct: 265 SEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVD 324

Query: 392 -AHEKKEEL--EECVE-------LMGE-------------MRKIGCVPDVSNYNVVIRLA 428
            AHE   EL   +C         L+G              MR++ C P+V  YN +I   
Sbjct: 325 DAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMIWGL 384

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSF 456
             +   +EA  ++ EM      P   ++
Sbjct: 385 SMVDRNEEAYGMFREMSECGFVPDARTY 412



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 4/306 (1%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF-V 337
           V YN L+ G+     +  AF LL+EM  +G   N  + ++++Q LCR  ++ +A   F  
Sbjct: 26  VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDA 85

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPNQLTYLHIMLAHEKK 396
            +E +  + DVV+YTTLI+G CK  ++D  +++   M+   G  PN  TY  ++    K+
Sbjct: 86  SLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQ 145

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
           + L+    ++ E RK    PDV  YN ++    +LG + EA+  + +M      P   SF
Sbjct: 146 DRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSF 205

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++ G      L +A E F EM+ R     P   T   +++ L ++ +++ A+ +   +
Sbjct: 206 NAIITGLCRARRLADALEVFNEMIDRDF--HPNLVTYSVVIDGLCKSDQLDEAQQLLDRM 263

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
           V++GC  ++ A+T  +    + G +  A      M+    +P   T+  ++  L K+   
Sbjct: 264 VSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRV 323

Query: 577 QIAAEI 582
             A EI
Sbjct: 324 DDAHEI 329



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 9/267 (3%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVIL 180
           R  +  +++ ++      Y  L+ +L ++ +     A   +M +E   P L++   F  +
Sbjct: 152 RAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVS---FNAI 208

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERF 239
           +     AR +  A+EV +EM      P+   +  ++D LCK+  + EA +L D M  E  
Sbjct: 209 ITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGC 268

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           +P L  +T L+ G+   G+L  A  +L +M   G  PD+V Y  ++    ++G++ DA E
Sbjct: 269 RPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHE 328

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           + +E+    C PN  +Y+ LI   CR  +++E  +   EM    C  +VVTY T+I G  
Sbjct: 329 IFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLS 385

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTY 386
              + +  Y +   M + G +P+  TY
Sbjct: 386 MVDRNEEAYGMFREMSECGFVPDARTY 412



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 13/196 (6%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            PN V     Y  +I  L K  +      L++ M  E  +P L+    +  L+  F++A 
Sbjct: 234 HPNLV----TYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVA---YTPLVLGFSAAG 286

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            +  A+ +L  M   GC PD   +  ++D LCK   V +A ++F E+   +  P++  ++
Sbjct: 287 RLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYS 346

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G+C+  ++ E   V   M++    P++V YN ++ G + + +  +A+ + +EM   
Sbjct: 347 ALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSEC 403

Query: 308 GCDPNANSYTVLIQAL 323
           G  P+A +Y  L +AL
Sbjct: 404 GFVPDARTYRGLKRAL 419



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 6/251 (2%)

Query: 326 MEKMEEANRAFVEMERSGCE--ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           M +    N+A      + C+  A  VTY  LI GFC +  +D  + +L  M   G+  N 
Sbjct: 1   MVRAGSHNQALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCND 60

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            T   I+    +   + + +E      ++    PDV +Y  +I   CKLG +  A +++ 
Sbjct: 61  RTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFR 120

Query: 443 EMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           +M AA    P   ++  +V G   Q  L  A     E   R    AP   T   L+ +L 
Sbjct: 121 KMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDF--APDVVTYNTLMAALF 178

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           +  +V+ A   ++ +  +G    + ++   I  L     + +A     +M+D D  P   
Sbjct: 179 QLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLV 238

Query: 562 TFAKLMRGLKK 572
           T++ ++ GL K
Sbjct: 239 TYSVVIDGLCK 249


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 208/457 (45%), Gaps = 39/457 (8%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM 189
           K   ++ + + Y ALI    K  KF  V  L+ EM       +  +VF  ++       +
Sbjct: 267 KLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLN-VNVKVFNSIIDAKYKYGL 325

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V KA E++  M + GCEPD   +  L++  C    +KEA +  +  +ER   P+   +T 
Sbjct: 326 VDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTP 385

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++ +CK+G  V A  +L ++ + G +PD+V Y   + G    G++  A  + ++M  KG
Sbjct: 386 LMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKG 445

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+A  Y VL+  LC+  +   A     EM     + D   Y TL+ GF ++ ++D+  
Sbjct: 446 VFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKAT 505

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+ + ++ +GI P                                    V  YNV+I+  
Sbjct: 506 ELFEVVMSKGIDPG-----------------------------------VVGYNVMIKGL 530

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G++ +AV+  N+M+ A+ +P   +   ++ G++ Q  L  A + F +M+ +     P
Sbjct: 531 CKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKY--KP 588

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                 +L+N   +   +  A+ V+  + +   E NV  +TI I      G  ++A S+ 
Sbjct: 589 NVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFF 648

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
             M+  + +P   TF  L+ GL  + N  +  E  E+
Sbjct: 649 ELMLMNNCLPNDTTFHYLINGLTNITNTTLLIEKNEE 685



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 135/563 (23%), Positives = 246/563 (43%), Gaps = 57/563 (10%)

Query: 72  HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ 131
           HDV +I +  +  HS    L+     S +++   +   VI+R  +  + G  ++ WAS  
Sbjct: 32  HDVIQILKTNQSHHS----LQSRFAESQIIVS-NVAHFVIDRIHNPQH-GLYFFHWASTL 85

Query: 132 PNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           P      +V Y +L+K + K R F  +  ++E+M  R  KP   T E    ++  +A   
Sbjct: 86  PFSSPLNNVAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFKP---TLEALNSVICVYAEYG 142

Query: 189 MVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK------- 240
            V KA+++   + + Y C P       LL+ L KN  V  A +L+D+M ER         
Sbjct: 143 FVDKAVKMFYMVCELYNCFPCVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLV 202

Query: 241 -----------------------------------PSLRHFTSLLYGWCKEGKLVEAKYV 265
                                              P++  +  ++ G+CK+G L  A  V
Sbjct: 203 VDNYSIVIVVKGLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRV 262

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
             ++K  GF P +  Y  L+ G+ + GK     +LL EM   G + N   +  +I A  +
Sbjct: 263 FEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYK 322

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
              +++A      M   GCE D+ TY  LI+  C   +I    E L+   +R +LPN+ +
Sbjct: 323 YGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFS 382

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  +M A+ K+ +     +++ ++ + G  PD+ +Y   I  +   GE+  A+ V  +M 
Sbjct: 383 YTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMM 442

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
              + P    + V++ G   +G    A     EM+   L   P       L++  +R  +
Sbjct: 443 EKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNL--QPDAYMYATLVDGFIRNNE 500

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           ++ A +++  +++KG +  V  + + I  L   G + +A SY   M  A+  P   T + 
Sbjct: 501 LDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHST 560

Query: 566 LMRGLKKLYNRQIAAEITEKVRK 588
           ++ G  K ++   A ++  ++ K
Sbjct: 561 VIDGYVKQHDLDSALKMFGQMMK 583


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/551 (25%), Positives = 237/551 (43%), Gaps = 87/551 (15%)

Query: 65  GSHNEFSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYR 123
           G  +E  H  V +I R+++   +  PKLE  L+H    L+P     V+    D   +  R
Sbjct: 61  GGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKPRQVCAVLQLQTDE-RVALR 119

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKF-GA--VWALMEEMRKEKPQLITTEVFVIL 180
           ++ WA +Q  Y H   VY A+++ LSK +   GA  V  LM + R E+      E F  +
Sbjct: 120 FFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIER----RPEAFGYV 175

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPD-------------------------------- 208
           M  ++ A  ++ A+  L  M K G EPD                                
Sbjct: 176 MVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEI 235

Query: 209 ---EFVFGCLLDALCKNSSVKEAAKLFDEMRERFK---PSLRHFTSLLYGWCKEGKLVEA 262
                 + CL+   C    +++A +L  EM   FK   P    + +++   CKE ++ E 
Sbjct: 236 XPNVITYNCLIKGYCDLHRLEDAXELIAEM--PFKGCSPDKISYYTVMGFLCKEKRIKEL 293

Query: 263 KYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           + ++ +M KD+   PD V YN  +   ++ G   +A E L+E   +    +   Y+ ++ 
Sbjct: 294 RLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVH 353

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           + CR  +M++A     EM   GC  DVVTYT++I+G C+ RK+D+  ++L  M + G  P
Sbjct: 354 SFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKP 413

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N ++                                   Y  ++   CK G   EA  + 
Sbjct: 414 NTVS-----------------------------------YTALLNGLCKNGNSLEAREMM 438

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           N  E     P   ++ V++HGF  +G   EAC+  +EM+ +G    P    +  L+ SL 
Sbjct: 439 NMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPV--EINLLIQSLC 496

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           + +KV+ AK      +  GC +NV  +T  IH       ++ A S   DM  ++  P   
Sbjct: 497 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVV 556

Query: 562 TFAKLMRGLKK 572
           T+  ++  L K
Sbjct: 557 TYTTIIDALGK 567



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 151/269 (56%), Gaps = 1/269 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           +  ++  F     + KA E+++EM   GC PD   +  +++ LC+   V +A K+  +M 
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 407

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +   KP+   +T+LL G CK G  +EA+ ++   ++  + P+ + Y+ L+ G+ + GK +
Sbjct: 408 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSS 467

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A +L++EM +KG  P      +LIQ+LC+ EK++EA R   +   +GC  +VV +TT+I
Sbjct: 468 EACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVI 527

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GFC+   ++    +LD M      P+ +TY  I+ A  KK  +EE  +L  +M ++G +
Sbjct: 528 HGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWI 587

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           P    Y  VI   C++G +++ + +  +M
Sbjct: 588 PTPVTYRTVIHQYCRMGRVEDLLKLLEKM 616



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 179/376 (47%), Gaps = 42/376 (11%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P +IT   +  L++ +     ++ A E++ EMP  GC PD+  +  ++  LCK   +KE 
Sbjct: 237 PNVIT---YNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEL 293

Query: 229 AKLFDEM---------------------------------RE----RFKPSLRHFTSLLY 251
             L ++M                                 RE    RF+     ++++++
Sbjct: 294 RLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVH 353

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +C+EG++ +AK ++ +M   G  PD+V Y ++++G  Q  K+  A ++L++M + GC P
Sbjct: 354 SFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKP 413

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  SYT L+  LC+     EA       E      + +TY+ L+ GF +  K     +++
Sbjct: 414 NTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLV 473

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             MI++G  P  +    ++ +  ++E+++E    M +    GC  +V N+  VI   C+ 
Sbjct: 474 REMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQK 533

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            +L+ A+++ ++M  ++  P   ++  ++     +G + EA +   +M+  G +  P   
Sbjct: 534 DDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPV-- 591

Query: 492 TLKALLNSLLRAQKVE 507
           T + +++   R  +VE
Sbjct: 592 TYRTVIHQYCRMGRVE 607



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 121/271 (44%), Gaps = 6/271 (2%)

Query: 114 CGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT 173
           C +  +L  R  M  S++  ++ +   Y  L+    +  K      L+ EM K K    T
Sbjct: 426 CKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIK-KGFFPT 484

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
                +L++       V +A   +++    GC  +   F  ++   C+   ++ A  L D
Sbjct: 485 PVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLD 544

Query: 234 EMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           +M    K P +  +T+++    K+G++ EA  + ++M   G+ P  V Y  ++  Y +MG
Sbjct: 545 DMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMG 604

Query: 293 KMTDAFELLKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           ++ D  +LL++M  R+ C     +Y  +I+ LC    +E+A +   ++ R+  + D  T 
Sbjct: 605 RVEDLLKLLEKMLSRQEC---RTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTC 661

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
             LI  +         Y +   M  R ++P+
Sbjct: 662 HMLIESYLSKGIPLMSYNVACRMFNRNLIPD 692


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/516 (25%), Positives = 232/516 (44%), Gaps = 48/516 (9%)

Query: 102 LRPGLTERVINRC-GDAGN--LGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW 158
           L P L++ +I     D  N  LG+R+++WAS++   + S + +  +I  LS+       W
Sbjct: 54  LVPFLSKNIITSVIKDEVNRQLGFRFFIWASRR-ERLRSRESFGLVIDMLSEDNGCDLYW 112

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE----------------------- 195
             +EE++      + +  F +L+  +A   M +KA+E                       
Sbjct: 113 QTLEELKSGGVS-VDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRV 171

Query: 196 -------------VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKP 241
                        V +EM K  C P+ + FG L+D L K     +A K+FD+M  R   P
Sbjct: 172 MMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           +   +T L+ G C+ G   +A+ +  +M+ +G  PD V +N LL G+ ++G+M +AFELL
Sbjct: 232 NRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELL 291

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
           +   + G       Y+ LI  L R  +  +A   +  M +   + D++ YT LI G  K+
Sbjct: 292 RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKA 351

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
            KI+   ++L SM  +GI P+   Y  ++ A   +  LEE   L  EM +    PD   +
Sbjct: 352 GKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTH 411

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM-V 480
            ++I   C+ G ++EA  ++ E+E +  SP   +F  ++ G    G L EA     +M V
Sbjct: 412 TILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEV 471

Query: 481 GRG---LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           GR     L     G      ++++ +  +  A    +     G   ++ ++ + I+    
Sbjct: 472 GRPASLFLRLSHSGNRS--FDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCR 529

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            G +  A      +    + P   T+  L+ GL ++
Sbjct: 530 AGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRV 565



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 174/403 (43%), Gaps = 62/403 (15%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF------VILMRRFASARMVKKAI 194
           Y A+IK+L           L+EE R  + ++  TE F       IL+       +V++A 
Sbjct: 376 YNAVIKALCGR-------GLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAE 428

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL---------RH 245
           E+  E+ K GC P    F  L+D LCK+  +KEA  L  +M      SL         R 
Sbjct: 429 EIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRS 488

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F +++    + G +++A   L    D G  PDIV YN L++G+ + G +  A +LL  ++
Sbjct: 489 FDTMV----ESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQ 544

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KG  P++ +Y  LI  L R+ + EEA + F    +         Y +L++  C+ RK+ 
Sbjct: 545 LKGLSPDSVTYNTLINGLHRVGREEEAFKLFY--AKDDFRHSPAVYRSLMTWSCRKRKVL 602

Query: 366 RCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEEC-------------VELMGEMR 410
             + +             + YL  +  L  E   E+E+C             +EL     
Sbjct: 603 VAFNL------------WMKYLKKISCLDDETANEIEQCFKEGETERALRRLIELDTRKD 650

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           ++   P    Y + +   C+ G   EA+ V++ +    +     S V ++HG   +  L 
Sbjct: 651 ELTLGP----YTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQLD 706

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA-QKVEMAKDV 512
            A E F   +       P+      LL+SLL + +K+E+   +
Sbjct: 707 AAIEVFLYTLDNNFKLMPR--VCNYLLSSLLESTEKMEIVSQL 747


>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
 gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 192/420 (45%), Gaps = 4/420 (0%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           +E AL    V L   +   V+NR    G     ++ WA KQP      D Y  +I++L +
Sbjct: 120 IERALTECSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIKQPMISKDVDSYNVVIRALGR 179

Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK-YGCEPDE 209
            +    +   + E+R E   +  +E F I++     AR V KAI++   + + +G E D 
Sbjct: 180 RKFIDFMVKFLHELRVEGVSM-NSETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFERDA 238

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
                LL  LC+ S V  A   F+ ++ +   +   +  ++ GW K G++ E + V  +M
Sbjct: 239 ESLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFEEM 298

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
           ++ GF PD + ++ LL G  + GK+ DA  +   M  KGC P+ N Y  +I     +   
Sbjct: 299 EEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVGNF 358

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
           +E  + +  +    C+ ++ TYT +ISG  K+ K+    E+ D M+ RG++    T    
Sbjct: 359 DECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSF 418

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +            + +  + RK+GC   +S Y +++    + G+    + +W+EM+ +  
Sbjct: 419 IEPLCSFGPPHAAMVIYTKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGY 478

Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           S   + +  ++ G    G    A    +E + +G    P       L N LL + KVE A
Sbjct: 479 SSDMEVYEYLISGLCNIGQFENAVLVMEESMRKGF--CPSRFICSKLNNKLLASNKVERA 536



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 136/335 (40%), Gaps = 43/335 (12%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           +K      D+  YN ++    +   +    + L E+R +G   N+ +++++I +L R  +
Sbjct: 158 IKQPMISKDVDSYNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARR 217

Query: 329 MEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP-NQLTY 386
           + +A + F  +E   G E D  +   L+   C+   +       +S+  +G +P N +TY
Sbjct: 218 VYKAIQMFGNLEEEFGFERDAESLNVLLQCLCRRSHVGAANSYFNSV--KGKIPFNCMTY 275

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             I+    K   + E   +  EM + G  PD  +++ ++    + G++++AV ++  ME 
Sbjct: 276 NVIIGGWSKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEE 335

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
               P T+ +  M+  F+  G   E  +Y++                             
Sbjct: 336 KGCVPDTNVYNAMISNFISVGNFDECMKYYR----------------------------- 366

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
                   C+++K C+ N+  +T  I  L     V +A     +M+D  ++ +  T    
Sbjct: 367 --------CLLSKNCDPNIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSF 418

Query: 567 MRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYK 601
           +  L        A  I  K RK+    +I+   YK
Sbjct: 419 IEPLCSFGPPHAAMVIYTKARKVGC--KISLSAYK 451



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 76/275 (27%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I   SK  +   +  + EEM ++   P  ++   F  L+     A  ++ A+ +  
Sbjct: 275 YNVIIGGWSKFGRVSEMQRVFEEMEEDGFSPDCLS---FSYLLEGLGRAGKIEDAVMIFG 331

Query: 199 EMPKYGCEPDEFVFG--------------------CLLDALC---------------KNS 223
            M + GC PD  V+                     CLL   C               K S
Sbjct: 332 SMEEKGCVPDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKAS 391

Query: 224 SVKEAAKLFDEMRER------------------FKP------------------SLRHFT 247
            V +A ++FDEM +R                  F P                  SL  + 
Sbjct: 392 KVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYK 451

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            LL    + GK      +  +M+++G+  D+ VY  L+SG   +G+  +A  +++E  RK
Sbjct: 452 LLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNIGQFENAVLVMEESMRK 511

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           G  P+    + L   L    K+E A R F++++ +
Sbjct: 512 GFCPSRFICSKLNNKLLASNKVERAYRLFLKIKHA 546


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 212/448 (47%), Gaps = 11/448 (2%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           Y     K P+ +    + R   K + + +    +  ++EE       +I    + +L+  
Sbjct: 104 YMTNKGKSPDVIACTALIREFCK-IGRTKNASQIMGILEE----SGAVIDVTSYNVLISG 158

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPS 242
           +  +  +++A+ VLD M   G  P+   +  +L +LC    +K+A ++   +++ +  P 
Sbjct: 159 YCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPD 215

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +   T L+   CKE  + +A  +  +M++ G +PD+V YN L+ G+ + G++ +A   LK
Sbjct: 216 VVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLK 275

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           ++   GC P+  S+ +++++LC   +  +A +    M R GC   VVT+  LI+  C+  
Sbjct: 276 KLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKG 335

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            + +   +L+ M + G  PN  ++  ++      + ++  +E +  M   GC PD+  YN
Sbjct: 336 LLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYN 395

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           +++   CK G++ +AV + +++ +   SP   S+  ++ G L  G    A E  +EM  +
Sbjct: 396 ILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYK 455

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P   T  +++  L R  KV  A   +  +       N + +   I  L  +    
Sbjct: 456 GL--KPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTS 513

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGL 570
            A  +  DM+     P   T+  L++G+
Sbjct: 514 LAIDFLADMVAKGCKPTEATYTTLIKGI 541



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 183/393 (46%), Gaps = 6/393 (1%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +RR      +++    L+ M   G  PD      L+   CK    K A+++   + E   
Sbjct: 86  LRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA 145

Query: 241 P-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
              +  +  L+ G+CK G++ EA  VL +M   G  P+   Y+ +L      GK+  A +
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQ 202

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +L    +  C P+  + TVLI A C+   + +A + F EM   GC+ DVVTY  LI GFC
Sbjct: 203 VLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFC 262

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  ++D     L  +   G  P+ +++  I+ +        + ++L+  M + GC+P V 
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            +N++I   C+ G L +A+NV   M     +P + SF  ++ GF     +  A EY + M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V RG    P   T   LL +L +  KV+ A  + S + +KGC  ++ ++   I  L   G
Sbjct: 383 VSRGCY--PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVG 440

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             + A     +M    + P   T   ++ GL +
Sbjct: 441 KAELAVELLEEMCYKGLKPDLITCTSVVGGLSR 473



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 168/346 (48%), Gaps = 6/346 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            LI +  K    G    L  EMR +  KP ++T   + +L++ F     + +AI  L ++
Sbjct: 221 VLIDATCKESGVGQAMKLFNEMRNKGCKPDVVT---YNVLIKGFCKGGRLDEAIRFLKKL 277

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
           P YGC+PD      +L +LC      +A KL   M R+   PS+  F  L+   C++G L
Sbjct: 278 PSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLL 337

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  VL  M   G  P+   +N L+ G+     +  A E L+ M  +GC P+  +Y +L
Sbjct: 338 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNIL 397

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           + ALC+  K+++A     ++   GC   +++Y T+I G  K  K +   E+L+ M  +G+
Sbjct: 398 LTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 457

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +T   ++    ++ ++ E ++    +++    P+   YN +I   CK  +   A++
Sbjct: 458 KPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAID 517

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
              +M A    P   ++  ++ G   +G   +A +   E+  RGL+
Sbjct: 518 FLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLV 563



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 166/377 (44%), Gaps = 40/377 (10%)

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +RH   L+    + G+L E    L  M + G  PD++    L+  + ++G+  +A +++ 
Sbjct: 83  IRHLRRLI----RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMG 138

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            +   G   +  SY VLI   C+  ++EEA R    ++R G   +  TY  ++   C   
Sbjct: 139 ILEESGAVIDVTSYNVLISGYCKSGEIEEALRV---LDRMGVSPNAATYDAVLCSLCDRG 195

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           K+ +  ++L   +Q    P+ +T   ++ A  K+  + + ++L  EMR  GC PDV  YN
Sbjct: 196 KLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYN 255

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
           V+I+  CK G L EA+    ++ +    P   S  +++      G  ++A +    M+ +
Sbjct: 256 VLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRK 315

Query: 483 GLLSA---------------------------PQYG------TLKALLNSLLRAQKVEMA 509
           G L +                           P++G      +   L+      + ++ A
Sbjct: 316 GCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRA 375

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            +    +V++GC  ++  + I + +L  +G V +A      +      P   ++  ++ G
Sbjct: 376 IEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDG 435

Query: 570 LKKLYNRQIAAEITEKV 586
           L K+   ++A E+ E++
Sbjct: 436 LLKVGKAELAVELLEEM 452



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 118/250 (47%), Gaps = 2/250 (0%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S   +  LI  L +    G    ++E M K       +  F  L++ F + + + +AIE 
Sbjct: 320 SVVTFNILINFLCQKGLLGKALNVLEMMPKHG-HTPNSRSFNPLIQGFCNGKGIDRAIEY 378

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
           L+ M   GC PD   +  LL ALCK+  V +A  +  ++  +   PSL  + +++ G  K
Sbjct: 379 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLK 438

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            GK   A  +L +M   G +PD++   +++ G ++ GK+ +A +    ++R    PNA  
Sbjct: 439 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFI 498

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  +I  LC+ ++   A     +M   GC+    TYTTLI G       +   ++ + + 
Sbjct: 499 YNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELY 558

Query: 376 QRGILPNQLT 385
            RG++   L 
Sbjct: 559 SRGLVKRSLV 568


>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
 gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/523 (24%), Positives = 243/523 (46%), Gaps = 45/523 (8%)

Query: 106 LTERVINRCGDAGNLGYRYYMWAS--KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEE 163
           ++  V +R  D   +G + + W S  K+  +  +     + +K L++ R F  +  ++  
Sbjct: 66  ISPFVFDRIQDV-EIGVKLFDWLSSEKKDEFFSNGFACSSFLKLLARYRIFNEIEDVLGN 124

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKN 222
           +R E  +L T E    ++  +A +  + KA+E+ D + + Y   PD      LL  L K+
Sbjct: 125 LRNENVKL-THEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKS 183

Query: 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLY-GWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
             + +A K++DEM +R      + T +L  G C EGK+   + ++      G  P+IV Y
Sbjct: 184 RRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFY 243

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++ GY ++G + +A+ + KE++ KG  P   ++  +I   C+      ++R   E++ 
Sbjct: 244 NTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKE 303

Query: 342 SG-----------------------------------CEADVVTYTTLISGFCKSRKIDR 366
            G                                   C+ DV TY  LI+  CK  K + 
Sbjct: 304 RGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEV 363

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
               LD   ++G++PN L+Y  ++ A+ K +E +   +L+ +M + GC PD+  Y ++I 
Sbjct: 364 AVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIH 423

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
                G + +AVN+  ++    +SP    + +++ G    G  + A   F EM+ R +L 
Sbjct: 424 GLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNIL- 482

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P       L++  +R+   + A+ V+S  V KG +++V      I     +G + EA +
Sbjct: 483 -PDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALA 541

Query: 547 YCLDMMDAD-VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            C++ M+ + ++P   T++ ++ G  K  +   A +I   + K
Sbjct: 542 -CMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEK 583



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 185/418 (44%), Gaps = 19/418 (4%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP + T   + IL+ R       + A+  LDE  K G  P+   +  L+ A CK+     
Sbjct: 342 KPDVAT---YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDI 398

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A+KL  +M ER  KP +  +  L++G    G + +A  + V++ D G  PD  +YN L+S
Sbjct: 399 ASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMS 458

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  + G+   A  L  EM  +   P+A  Y  LI    R    +EA + F      G + 
Sbjct: 459 GLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKV 518

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DVV +  +I GFC+S  +D     ++ M +  ++P++ TY  I+  + K++++   +++ 
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIF 578

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M K  C P+V  Y  +I   C  G+ K A   + EM+   L P   ++  ++     +
Sbjct: 579 RYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKE 638

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ--------------KVEMAKDV 512
              +E   Y+ E++       P   T   LL   ++                +  +  + 
Sbjct: 639 SSTLEKAVYYWELMMTN-KCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEF 697

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +  + + G   +  A+   +  L  +G VK AC +   M+     P P +FA ++ G 
Sbjct: 698 FHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHGF 755



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 200/470 (42%), Gaps = 47/470 (10%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           +L+  L K R+ G    + +EM  ++   +      IL++   +   V+   ++++    
Sbjct: 175 SLLSLLVKSRRLGDARKVYDEM-CDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWG 233

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVE 261
            GC P+   +  ++   CK   ++ A  +F E++ + F P+L  F +++ G+CKEG  V 
Sbjct: 234 KGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVA 293

Query: 262 AKYVLVQMKDAGF-----------------------------------EPDIVVYNNLLS 286
           +  +L ++K+ G                                    +PD+  YN L++
Sbjct: 294 SDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILIN 353

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              + GK   A   L E  +KG  PN  SY  LIQA C+ ++ + A++  ++M   GC+ 
Sbjct: 354 RLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKP 413

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D+VTY  LI G   S  +D    +   +I RG+ P+   Y  +M    K         L 
Sbjct: 414 DIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLF 473

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV----MVHG 462
            EM     +PD   Y  +I    + G+  EA  V+    + S+  G    VV    M+ G
Sbjct: 474 SEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVF----SLSVEKGVKVDVVHHNAMIKG 529

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
           F   G L EA      M    L+  P   T   +++  ++ Q +  A  ++  +    C+
Sbjct: 530 FCRSGMLDEALACMNRMNEEHLV--PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCK 587

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            NV  +T  I+     G  K A     +M   D++P   T+  L+R L K
Sbjct: 588 PNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAK 637



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 158/376 (42%), Gaps = 56/376 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI++  K +++     L+ +M  R  KP ++T   + IL+     +  +  A+ +  
Sbjct: 383 YAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVT---YGILIHGLVVSGHMDDAVNMKV 439

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++   G  PD  ++  L+  LCK      A  LF EM +R   P    + +L+ G+ + G
Sbjct: 440 KLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSG 499

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              EA+ V     + G + D+V +N ++ G+ + G + +A   +  M  +   P+  +Y+
Sbjct: 500 DFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYS 559

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I    + + M  A + F  ME++ C+ +VVTYT+LI+GFC         E    M  R
Sbjct: 560 TIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLR 619

Query: 378 GILPNQLTYLHIMLAHEKKEE-LEECVELMGEMRKIGCVP-------------------- 416
            ++PN +TY  ++ +  K+   LE+ V     M    CVP                    
Sbjct: 620 DLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKV 679

Query: 417 ----DVSN-------------------------YNVVIRLACKLGELKEAVNVWNEMEAA 447
               D SN                         YN  +   C  G +K A    ++M   
Sbjct: 680 LAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKK 739

Query: 448 SLSPGTDSFVVMVHGF 463
             SP   SF  ++HGF
Sbjct: 740 GFSPDPVSFAAILHGF 755


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 205/435 (47%), Gaps = 11/435 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALME--EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL K+  +    +L    E    KP ++T     ILM  +     +     +L 
Sbjct: 13  FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVT---LTILMNCYCHTGGITFLFSILT 69

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           ++ K G EP+   F  L+  +C N    EA    D +    FK     +  L+ G CK G
Sbjct: 70  KILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMG 129

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
              E +  +  ++      D+V+Y+ ++    +   +TDA+ L  EM  KG  PN  +++
Sbjct: 130 ---ETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFS 186

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+ ALC+  K ++A      M + G + +VVTY  ++ G+C   ++++   I + M+Q 
Sbjct: 187 ILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQE 246

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN   Y  I+    KK+ ++E + L  EM      PDV  YN++I   CKLG++  +
Sbjct: 247 GVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTS 306

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           + + +EM +   +    ++  ++H       L +A    KE+  +G+   P   T   L+
Sbjct: 307 LELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGI--QPNVCTYTTLI 364

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           + L +  ++E A  ++  I+T+G  + V+ + + I+ L   G   EA +    M D   +
Sbjct: 365 DGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACI 424

Query: 558 PQPDTFAKLMRGLKK 572
           P   ++  ++  L +
Sbjct: 425 PDAVSYETIIYALSE 439



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 168/347 (48%), Gaps = 9/347 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  L+  L KM   G   A M+ +RK     +  +V  +  ++      + V  A  +  
Sbjct: 118 YAILMNGLCKM---GETRAAMQMLRK---TWVNADVVMYSTIIDSLCKGKFVTDAYRLYS 171

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  P+ + F  L+DALCK+   K+A  L   M ++  KP++  + +++ G+C   
Sbjct: 172 EMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVN 231

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A  +   M   G EP++  YN +++G  +  ++ +A  L KEM  K  +P+  +Y 
Sbjct: 232 QVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYN 291

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  LC++ K+  +     EM   G   D++TY +L+   CK+  +D+   ++  +  +
Sbjct: 292 ILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQ 351

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI PN  TY  ++    K   LE+   +  E+   G    V  YNV+I   CK G   EA
Sbjct: 352 GIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEA 411

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           + + + ME  +  P   S+  +++    +G  ++  +    M+ RGL
Sbjct: 412 LALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGL 458



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 173/367 (47%), Gaps = 6/367 (1%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           P    F  +L +L K +    A  LF ++     KPS+   T L+  +C  G +     +
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
           L ++   G+EP+ + +  L+ G    G+  +A      +   G   +  SY +L+  LC 
Sbjct: 68  LTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLC- 126

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
             KM E   A   + ++   ADVV Y+T+I   CK + +   Y +   MI +GI PN  T
Sbjct: 127 --KMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYT 184

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           +  ++ A  K  + ++ + L+  M K G  P+V  Y  ++   C + ++ +A+N++N M 
Sbjct: 185 FSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMV 244

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
              + P    + ++++G   +  + EA   FKEM  + +   P   T   L++ L +  K
Sbjct: 245 QEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKI--NPDVVTYNILIDGLCKLGK 302

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
           +  + ++   + + G  +++  +   +H+L  N H+ +A +   ++ D  + P   T+  
Sbjct: 303 ISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTT 362

Query: 566 LMRGLKK 572
           L+ GL K
Sbjct: 363 LIDGLCK 369



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 30/226 (13%)

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+Q    P  L + HI+ +  K       + L  ++   G  P +    +++   C  G 
Sbjct: 1   MLQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGG 60

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGT 492
           +    ++  ++      P + +F  ++ G    G   EA  +   +V  G  L    Y  
Sbjct: 61  ITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAI 120

Query: 493 L-----------------------------KALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           L                               +++SL + + V  A  ++S ++ KG   
Sbjct: 121 LMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFP 180

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           NVY ++I + +L  +   K+A +    MM   V P   T+  +M G
Sbjct: 181 NVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDG 226


>gi|242054767|ref|XP_002456529.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
 gi|241928504|gb|EES01649.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
          Length = 517

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 179/355 (50%), Gaps = 6/355 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP Y        +++  L+K R+F A  AL++EMR+    + +    ++L+RR  +AR V
Sbjct: 130 QPGYAPGRRACHSMLAILAKHRRFDAARALLDEMRRA--SMASPAAVLLLVRRHCAARDV 187

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
             A+     +P +G +     F  LL ALC+  +V++A  L     + F    + F  +L
Sbjct: 188 AAAVAAFRALPSFGFDTGVAEFHGLLSALCRYKNVQDAEHLLISCEKEFPFETKSFNIVL 247

Query: 251 YGWCK-EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
            GWC     L EAK     M+  G + D+V Y +++S +++ G +    +L   M   G 
Sbjct: 248 NGWCNIVCSLREAKRFWSSMERKGIDRDVVSYGSMISCFSKAGSLHSVMKLFNHMNEAGV 307

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+   Y  ++ AL +   ++ A      ME      D  T+ +LI   CK+R++    E
Sbjct: 308 APDRKVYNAIVFALAKGRCVKAAKMLVRTMEEKQVAPDTATFNSLIGPLCKARQVQEAME 367

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D+M++RG+ P+  T+ H +L   +     E  +L+ +M+++ C P++  Y ++IR  C
Sbjct: 368 MFDAMLERGLSPSVRTF-HALLNVARNS--TEVFDLLDKMKQLQCEPEMDTYIMLIRKFC 424

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           +  + +    +W+ M A  LSP   +++V++HG    G L EA +Y+ EM  +G 
Sbjct: 425 RWRQHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAAKYYGEMKSKGF 479



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 4/203 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           F+ A  +   +++ + M + G  PD  V+  ++ AL K   VK A  L   M E+   P 
Sbjct: 286 FSKAGSLHSVMKLFNHMNEAGVAPDRKVYNAIVFALAKGRCVKAAKMLVRTMEEKQVAPD 345

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
              F SL+   CK  ++ EA  +   M + G  P +  ++ LL+        T+ F+LL 
Sbjct: 346 TATFNSLIGPLCKARQVQEAMEMFDAMLERGLSPSVRTFHALLN---VARNSTEVFDLLD 402

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M++  C+P  ++Y +LI+  CR  + E   + +  M  +G   D   Y  LI G   + 
Sbjct: 403 KMKQLQCEPEMDTYIMLIRKFCRWRQHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNG 462

Query: 363 KIDRCYEILDSMIQRGILPNQLT 385
           +++   +    M  +G  P + T
Sbjct: 463 RLEEAAKYYGEMKSKGFSPEKKT 485



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 140/392 (35%), Gaps = 71/392 (18%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           G  P       +L  L K+     A  L DEMR     S      L+   C    +  A 
Sbjct: 132 GYAPGRRACHSMLAILAKHRRFDAARALLDEMRRASMASPAAVLLLVRRHCAARDVAAAV 191

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
                +   GF+  +  ++ LLS   +   + DA  LL    ++       S+ +++   
Sbjct: 192 AAFRALPSFGFDTGVAEFHGLLSALCRYKNVQDAEHLLISCEKE-FPFETKSFNIVLNGW 250

Query: 324 CRME-KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           C +   + EA R +  MER G + DVV+Y ++IS F                        
Sbjct: 251 CNIVCSLREAKRFWSSMERKGIDRDVVSYGSMISCF------------------------ 286

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
                       K   L   ++L   M + G  PD   YN ++    K   +K A  +  
Sbjct: 287 -----------SKAGSLHSVMKLFNHMNEAGVAPDRKVYNAIVFALAKGRCVKAAKMLVR 335

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN---- 498
            ME   ++P T +F  ++        + EA E F  M+ RGL  +P   T  ALLN    
Sbjct: 336 TMEEKQVAPDTATFNSLIGPLCKARQVQEAMEMFDAMLERGL--SPSVRTFHALLNVARN 393

Query: 499 ----------------------------SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
                                          R ++ E  + +WS +   G   +  A+ +
Sbjct: 394 STEVFDLLDKMKQLQCEPEMDTYIMLIRKFCRWRQHESVEKLWSAMPANGLSPDRSAYIV 453

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
            IH LF NG ++EA  Y  +M      P+  T
Sbjct: 454 LIHGLFLNGRLEEAAKYYGEMKSKGFSPEKKT 485


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 224/491 (45%), Gaps = 49/491 (9%)

Query: 55  CKCNNTTDTHGSH--------------NEFSHDVEKIFRILKKFHSRLPKLELALQHSGV 100
           CK  N T TH  H              + F+H +  + +I  K +S++  L   ++ SG+
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKI--KHYSQVFSLYNQMRLSGL 100

Query: 101 VLRPGLTERVINRCGDAGNLGYRYYMWA-----SKQPNYVHSYDVYRALIKSLSKMRKFG 155
                    ++N   +   L   +  +A        PN V     Y  LIK L    +  
Sbjct: 101 SSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIV----TYNTLIKGLCMEHRIS 156

Query: 156 AVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI----EVLDEMPKY--GCEP 207
               L   M+K    P ++T   +  L++       +  A+    E+L+++ +Y   C+P
Sbjct: 157 EATRLFLRMQKLGCTPDVVT---YGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKP 213

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-----------FKPSLRHFTSLLYGWCKE 256
           +   +  ++D LCK     EA +LF+EM+ +            +P +  F  L+   CKE
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKE 273

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK++EAK +L  M ++G  PD+V YN+L+ G+  +G +  A EL   M  KGC+P+  SY
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            VLI    +  K+EEA + + EM   G   +V+TY +L+ G   + K+D   ++   M  
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 393

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            GI  N  TY   +    K + L E ++L  E++      ++ N N +I   CK G+L+ 
Sbjct: 394 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 453

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  ++ ++      P   ++ +M+HGF  +G + +A    ++M   G    P   T   L
Sbjct: 454 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG--CTPDIITYNTL 511

Query: 497 LNSLLRAQKVE 507
           +     + K+E
Sbjct: 512 MRGFYESNKLE 522



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 229/488 (46%), Gaps = 31/488 (6%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE--VFVI 179
           +   M ++  P    S   +  L+  L+K++ +  V++L  +MR      ++++     I
Sbjct: 57  FHLMMRSTPTP----SLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSG---LSSDRCTLNI 109

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+    +   +++       + + G  P+   +  L+  LC    + EA +LF  M++  
Sbjct: 110 LLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLG 169

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM------KDAGFEPDIVVYNNLLSGYAQMG 292
             P +  + +L+ G C  G +  A  +  +M       +   +P+++ YN ++ G  ++G
Sbjct: 170 CTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG 229

Query: 293 KMTDAFELLKEMRRKGCDPNAN----------SYTVLIQALCRMEKMEEANRAFVEMERS 342
           +  +A +L +EM+ +G  PN            ++ VLI  LC+  K+ EA +    M  S
Sbjct: 230 REDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES 289

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D+VTY +LI GFC    ++   E+  SM  +G  P+ ++Y  ++  + K  ++EE 
Sbjct: 290 GIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEA 349

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++L  EM  +G  P+V  Y+ +++     G++ +A  +++ M+A  ++  + ++ + + G
Sbjct: 350 MKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDG 409

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                CL EA + F E+         +   L  L++ L +A K+E A +++  +  +G E
Sbjct: 410 LCKNDCLFEAMKLFTELKSSNF--KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHE 467

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            NV  +TI IH     G V +A      M      P   T+  LMRG    Y      E+
Sbjct: 468 PNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG---FYESNKLEEV 524

Query: 583 TEKVRKMA 590
            + + +MA
Sbjct: 525 VQLLHRMA 532



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 203/444 (45%), Gaps = 25/444 (5%)

Query: 147 SLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
           +++++R+ F A   ++   R   P ++T   +  L++       + +A  +   M K GC
Sbjct: 116 NVNRLREGFAAFAGILR--RGYSPNIVT---YNTLIKGLCMEHRISEATRLFLRMQKLGC 170

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-------KPSLRHFTSLLYGWCKEGK 258
            PD   +G L+  LC   ++  A KL  EM           KP++  +  ++ G CK G+
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230

Query: 259 LVEAKYVLVQMK----------DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
             EAK +  +MK          D G +PD+V +N L+    + GK+ +A +LL  M   G
Sbjct: 231 EDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESG 290

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y  LI+  C +  +  A   FV M   GCE DV++Y  LI+G+ K+ K++   
Sbjct: 291 IVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAM 350

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++ + M+  G  PN +TY  ++       ++++  +L   M+  G   +   Y + +   
Sbjct: 351 KLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGL 410

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK   L EA+ ++ E+++++     ++   ++ G    G L  A E F+++   G    P
Sbjct: 411 CKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG--HEP 468

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   +++   R  +V+ A  +   +   GC  ++  +   +   + +  ++E     
Sbjct: 469 NVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLL 528

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
             M   DV P   T + ++  L K
Sbjct: 529 HRMAQKDVSPDAITCSIVVDMLSK 552



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 165/371 (44%), Gaps = 51/371 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--------KPQLITTEVFVILMRRFASARMVKK 192
           Y  LIK L           L +EM  +        KP +IT  + V  + +       K+
Sbjct: 177 YGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQ 236

Query: 193 AIE-------VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLR 244
             E       + +EM   G +PD   F  L+D LCK   V EA KL   M E    P L 
Sbjct: 237 LFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLV 296

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM------------- 291
            + SL+ G+C  G L  A+ + V M   G EPD++ YN L++GY++              
Sbjct: 297 TYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM 356

Query: 292 ----------------------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329
                                 GK+ DA +L   M+  G   N+ +Y + +  LC+ + +
Sbjct: 357 LLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCL 416

Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
            EA + F E++ S  + ++     LI G CK+ K++  +E+ + +   G  PN +TY  +
Sbjct: 417 FEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIM 476

Query: 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
           +    ++ ++++   L+ +M   GC PD+  YN ++R   +  +L+E V + + M    +
Sbjct: 477 IHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDV 536

Query: 450 SPGTDSFVVMV 460
           SP   +  ++V
Sbjct: 537 SPDAITCSIVV 547



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 192/423 (45%), Gaps = 24/423 (5%)

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCKEGKLVEAKYV 265
           P    F  LL  L K     +   L+++MR     S R     LL   C   +L E    
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
              +   G+ P+IV YN L+ G     ++++A  L   M++ GC P+  +Y  LI+ LC 
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCG 186

Query: 326 MEKMEEANRAFVEMERS------GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
              +  A +   EM          C+ +V+TY  ++ G CK  + D   ++ + M  +G+
Sbjct: 187 TGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGM 246

Query: 380 LPNQL----------TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +PN++          T+  ++    K+ ++ E  +L+G M + G VPD+  YN +I   C
Sbjct: 247 IPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFC 306

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
            +G+L  A  ++  M +    P   S+ V+++G+     + EA + + EM+  G    P 
Sbjct: 307 MVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVG--KRPN 364

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T  +LL  +  A KV+ AK ++S +   G   N Y + I++  L  N  + EA     
Sbjct: 365 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT 424

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFKM----YKRRG 604
           ++  ++   + +    L+ GL K    + A E+ EK+     E   +T+ +    + R G
Sbjct: 425 ELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREG 484

Query: 605 ERD 607
           + D
Sbjct: 485 QVD 487



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 45/314 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     +  LI +L K  K      L+  M +    P L+T   +  L+  F    
Sbjct: 257 QPDMV----TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVT---YNSLIEGFCMVG 309

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFT 247
            +  A E+   MP  GCEPD   +  L++   K   V+EA KL++EM    K P++  + 
Sbjct: 310 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 369

Query: 248 SLLYG-----------------------------------WCKEGKLVEAKYVLVQMKDA 272
           SLL G                                    CK   L EA  +  ++K +
Sbjct: 370 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSS 429

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
            F+ +I   N L+ G  + GK+  A+EL +++  +G +PN  +YT++I   CR  ++++A
Sbjct: 430 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 489

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
           N    +ME +GC  D++TY TL+ GF +S K++   ++L  M Q+ + P+ +T   ++  
Sbjct: 490 NVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDM 549

Query: 393 HEKKEELEECVELM 406
             K E+ +EC+ L+
Sbjct: 550 LSKDEKYQECLHLL 563



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 138/351 (39%), Gaps = 62/351 (17%)

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           T A      M R    P+ +S+  L+  L +++   +    + +M  SG  +D  T   L
Sbjct: 51  THALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNIL 110

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ++  C   ++   +     +++RG  PN +TY  ++     +  + E   L   M+K+GC
Sbjct: 111 LNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGC 170

Query: 415 VPDVS-----------------------------------------NYNVVIRLACKLG- 432
            PDV                                           YN+++   CK+G 
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230

Query: 433 ---------ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
                    E+K    + NEM    L P   +F V++     +G +IEA +    M+  G
Sbjct: 231 EDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESG 290

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           ++  P   T  +L+        +  A++++  + +KGCE +V ++ + I+       V+E
Sbjct: 291 IV--PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEE 348

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGL---------KKLYNRQIAAEITEK 585
           A     +M+     P   T+  L++G+         KKL++   A  I E 
Sbjct: 349 AMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 399


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 204/447 (45%), Gaps = 42/447 (9%)

Query: 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           V+ +ME+    KP ++T   +  ++  +     V +A+E+L EM + GC P++  +  L+
Sbjct: 202 VYGMMEQF-GIKPTVVT---YNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLV 257

Query: 217 DALCKNSSVKEAAKLFDEM------------------------------------RERFK 240
           + L K   +++A  L +EM                                      R  
Sbjct: 258 NGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAF 317

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P+L  + +L+YG CK  ++   +     M  + F PDIV +N+LL GY + G +++AF L
Sbjct: 318 PTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLL 377

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             E++ +   P   +Y  LI  LC    ++ A R   EM   G   D+ TYT L++G  K
Sbjct: 378 FDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFK 437

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              +       + M+ +G+ P++  Y   ++   K  +      +  EM   G  PDV  
Sbjct: 438 LGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVIT 497

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YNV +   C+ G  +EA ++   M +  L P   ++  +++GF+  G L +A E F EM+
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            +G+  AP   T   L+++    Q +++A   +S ++ K    NV  +   I+ L     
Sbjct: 558 SKGV--APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRR 615

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLM 567
           + EA  Y  +M +  ++P   ++  L+
Sbjct: 616 MDEAYKYFDEMEEKGILPNKFSYTILI 642



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 202/436 (46%), Gaps = 6/436 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+  LSK  +      L+EEM       ++   +  L+  F    +  +A ++++EM
Sbjct: 253 YNVLVNGLSKKGELEQAKGLIEEMLNSGLN-VSAYTYNPLINGFCQKGLFVEAFDLVEEM 311

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
                 P    +  L+  LCK   V      F +M + +F P +  F SLLYG+C+ G +
Sbjct: 312 VNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCI 371

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  ++K     P ++ YN L+ G    G +  A  L KEM  +G  P+  +YT+L
Sbjct: 372 SEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTIL 431

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +    ++  +  A   F EM   G + D   Y T I G  K       + + + M+  G 
Sbjct: 432 VNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGF 491

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY   + A  ++   EE  +L+  M   G +PD   Y  +I    K G L++A  
Sbjct: 492 PPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE 551

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLN 498
           V+NEM +  ++P   ++ V++H    +  L  A  YF +M+ +   S P    T  A++N
Sbjct: 552 VFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEK---SVPANVITYNAIIN 608

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L   ++++ A   +  +  KG   N +++TI I+   + G+ +EA     +M+D  + P
Sbjct: 609 GLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQP 668

Query: 559 QPDTFAKLMRGLKKLY 574
              T +  ++ L + Y
Sbjct: 669 DSFTHSVFLKNLHRDY 684



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 232/514 (45%), Gaps = 30/514 (5%)

Query: 96  QHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFG 155
           Q   V+  P L  RV++       +  R++ W   QP++  S  V+ A++  L       
Sbjct: 77  QFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMH 136

Query: 156 AVWALME-----EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           A + +ME     EM      LI   V  +L               V D+M + G  PD  
Sbjct: 137 AAYWVMERVVSFEMHGVVDVLIAGHVXCLL---------------VFDKMIRNGLLPD-- 179

Query: 211 VFGC--LLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           V  C  +L  L ++ ++   AK    M E+F  KP++  + ++L  +CKEG++ +A  +L
Sbjct: 180 VKNCNRILRVL-RDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELL 238

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M++ G  P+ V YN L++G ++ G++  A  L++EM   G + +A +Y  LI   C+ 
Sbjct: 239 SEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQK 298

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               EA     EM        + TY TL+ G CK  ++         M++    P+ +++
Sbjct: 299 GLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSF 358

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++  + +   + E   L  E++    VP V  YN +I   C  G L  A+ +  EM  
Sbjct: 359 NSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTD 418

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             L P   ++ ++V+G    G +  A  +F EM+ +GL   P        +   ++    
Sbjct: 419 QGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL--KPDRFAYNTRIVGEMKIADT 476

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
            +A  +   ++  G   +V  + +++H+L   G+ +EAC    +M+   ++P   T+  +
Sbjct: 477 SVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536

Query: 567 MRGLKKLYNRQIAAEI-TEKVRKMAAERQITFKM 599
           + G  K  + + A E+  E + K  A   +T+ +
Sbjct: 537 INGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTV 570



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 183/423 (43%), Gaps = 43/423 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    +   F   + L+EEM  R+  P L T    +  + ++     V+       
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLR---FS 344

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K    PD   F  LL   C+   + EA  LFDE++ R   P++  + +L++G C  G
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG------------------------- 292
            L  A  +  +M D G  PDI  Y  L++G  ++G                         
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464

Query: 293 -------KMTD---AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                  K+ D   AF + +EM   G  P+  +Y V + ALC+    EEA      M   
Sbjct: 465 TRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD 524

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D VTYT++I+GF K+  + +  E+ + M+ +G+ P+ +TY  ++ AH  K+ L+  
Sbjct: 525 GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLA 584

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
                +M +     +V  YN +I   C    + EA   ++EME   + P   S+ ++++ 
Sbjct: 585 FMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINE 644

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G   EA   ++EM+ R +   P   T    L +L R  +V   + V S I      
Sbjct: 645 SCNMGYWEEALRLYREMLDRKI--QPDSFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702

Query: 523 LNV 525
           +NV
Sbjct: 703 INV 705


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 220/504 (43%), Gaps = 91/504 (18%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            F +L+    S   +  A+  L +M  +G  PD   +  LL+A C+   + EA  L   M
Sbjct: 211 TFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARM 270

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            +E   P+   + +L+  + + G + +A  V+  M   GFEPD+  YN L +G  Q GK+
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330

Query: 295 ------------------------------------TDAFELLKEMRRKGCDPNANSYTV 318
                                               +DA  LL+EMR KG   +  ++ +
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNI 390

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI--- 375
           +++ LCR  ++EEA      M   G   DV+TY TLI   CK+  + + + ++D M+   
Sbjct: 391 IVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSG 450

Query: 376 --------------------------------QRGILPNQLTYLHIMLAHEKKEELEECV 403
                                           QRG +P++++Y  +M A+ K+ + E  +
Sbjct: 451 LKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPAL 510

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L  EM K    P +S YN +I+    +G+L EA++  NE+    L P   ++ +++H +
Sbjct: 511 CLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAY 570

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             +G L +A ++  +MV       P   T   L+N L    ++E A  ++   V KG ++
Sbjct: 571 CKEGDLEKAFQFHNKMVENSF--KPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKV 628

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           +V  +   I +L  +  V  A  +  DM    +  QPD F          YN  ++A ++
Sbjct: 629 DVITYNTLIQALCKDNDVDTALRFFADMEVRGL--QPDVFT---------YNVLLSA-LS 676

Query: 584 EKVRKMAAERQI-----TFKMYKR 602
           E  R + A++ +     + K+Y R
Sbjct: 677 EAGRSVEAQKMLHKLNESGKLYGR 700



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 200/442 (45%), Gaps = 40/442 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  L+ +  +    G    L+  M+KE   + T   +  L+  +A    +K+A +V++ 
Sbjct: 246 TYNTLLNAHCRKGMLGEARTLLARMKKEG-IVPTRATYNTLVSAYARLGWIKQATDVVEA 304

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM------------------------ 235
           M  +G EPD + +  L   LC+   V EA KL DEM                        
Sbjct: 305 MTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQ 364

Query: 236 ------------RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                       RE+  K SL     ++ G C+EG+L EA   L  M + G  PD++ YN
Sbjct: 365 RSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYN 424

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+    + G +  AF L+ EM R G   +  +   L+  LC+ ++ EEA        + 
Sbjct: 425 TLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQR 484

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D V+Y T+++ + K  K +    + D MI+R + P+  TY  ++       +L E 
Sbjct: 485 GFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEA 544

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++ + E+ ++G VPD + YN++I   CK G+L++A    N+M   S  P   +   +++G
Sbjct: 545 IDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNG 604

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G L +A + F+  V +G        T   L+ +L +   V+ A   ++ +  +G +
Sbjct: 605 LCLYGRLEKAMKLFESWVEKG--KKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQ 662

Query: 523 LNVYAWTIWIHSLFSNGHVKEA 544
            +V+ + + + +L   G   EA
Sbjct: 663 PDVFTYNVLLSALSEAGRSVEA 684



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 205/445 (46%), Gaps = 9/445 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+ +  K ++      L+EEMR++  K  L+T  + V   +       +++A+  L
Sbjct: 352 TYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIV---KGLCREGQLEEALGRL 408

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           + M + G  PD   +  L+DA CK  +V +A  L DEM R   K       +LLY  CKE
Sbjct: 409 EMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKE 468

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +  EA+ +L      GF PD V Y  +++ Y +  K   A  L  EM ++   P+ ++Y
Sbjct: 469 KRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTY 528

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             LI+ L  M K+ EA     E+   G   D  TY  +I  +CK   +++ ++  + M++
Sbjct: 529 NTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVE 588

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
               P+ +T   +M        LE+ ++L     + G   DV  YN +I+  CK  ++  
Sbjct: 589 NSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDT 648

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKA 495
           A+  + +ME   L P   ++ V++      G  +EA +   ++   G L     Y ++K+
Sbjct: 649 ALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKS 708

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
            + ++   +  E+  D+ S   T+G +   Y    +I  L   G +KEA +   +MM   
Sbjct: 709 SVEAVETGKDPEVKSDIESVGNTQGDDQESY--NKYIKELCIGGQLKEAKAVLDEMMQKG 766

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAA 580
           +     T+  LM GL K   RQ  A
Sbjct: 767 MSVDNSTYITLMEGLIKRQKRQTHA 791



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 209/454 (46%), Gaps = 16/454 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           YR L+ +L        +  L   +    P   T+ +    +  +A  R+   A ++L   
Sbjct: 106 YRNLLPTLLDFVPLDPLRHLHRHLLASFP---TSALADAALSTYARLRLPHLAAQLLHSF 162

Query: 201 PKYGC-EPDEFVFGCLLDALCKNSSVKEAAKL--FDEMRE-RFKPSLRHFTSLLYGWCKE 256
            + GC  P       +L AL ++ S    A L  F  +   R  P+   F  L++  C +
Sbjct: 163 RRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSK 222

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G L +A   L +M+  G  PD V YN LL+ + + G + +A  LL  M+++G  P   +Y
Sbjct: 223 GTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATY 282

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             L+ A  R+  +++A      M   G E D+ TY  L +G C++ K+D  +++ D M Q
Sbjct: 283 NTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQ 342

Query: 377 RGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            GI+ P+ +TY  ++ A  K +   + + L+ EMR+ G    +  +N++++  C+ G+L+
Sbjct: 343 LGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLE 402

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA+     M    L+P   ++  ++      G + +A     EMV  GL       TL  
Sbjct: 403 EALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGL--KMDTFTLNT 460

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           LL +L + ++ E A+++      +G   +  ++   + + F     + A     +M+   
Sbjct: 461 LLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRK 520

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           + P   T+  L++GL  +       ++TE + K+
Sbjct: 521 LTPSISTYNTLIKGLSTM------GKLTEAIDKL 548


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 239/539 (44%), Gaps = 57/539 (10%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYY-MWASKQPNYVHSYDVYRALIKSLSKMRKFG-AVWA 159
           L P     V+ RC +   LG R+        PN+ H+     A+I  L +  +   A   
Sbjct: 76  LNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSC 135

Query: 160 LMEEMRKE---KPQLITT------------EVFVILMRRFASARMVKKAIEVLDEMPKYG 204
           L+  +R+    + +++ +             VF +L+R +  AR +++A E    +   G
Sbjct: 136 LLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKG 195

Query: 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAK 263
                     L+ +L +   V+ A  ++ E+ R     ++     ++   CK+GK+ +  
Sbjct: 196 FTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVG 255

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
             L Q+++ G  PDIV YN L+S Y+  G M +AFEL+  M  KG  P   +Y  +I  L
Sbjct: 256 TFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGL 315

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTY-------------------------------- 351
           C+  K E A   F EM RSG   D  TY                                
Sbjct: 316 CKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDL 375

Query: 352 ---TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
              ++++S F +S  +D+     +S+ + G++P+ + Y  ++  + +K  +   + L  E
Sbjct: 376 VCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNE 435

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M + GC  DV  YN ++   CK   L EA  ++NEM   +L P + +  +++ G    G 
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGN 495

Query: 469 LIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
           L  A E F++M  + + L    Y T   LL+   +   ++ AK++W+ +V+K       +
Sbjct: 496 LQNAMELFQKMKEKRIRLDVVTYNT---LLDGFGKVGDIDTAKEIWADMVSKEILPTPIS 552

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           ++I +++L S GH+ EA     +M+  ++ P       +++G  +  N        EK+
Sbjct: 553 YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 213/443 (48%), Gaps = 12/443 (2%)

Query: 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
           KM K G   + ++E +   P ++T   +  L+  ++S  ++++A E+++ MP  G  P  
Sbjct: 250 KMEKVGTFLSQVQE-KGVYPDIVT---YNTLISAYSSKGLMEEAFELMNAMPGKGFSPGV 305

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
           + +  +++ LCK+   + A ++F EM R    P    + SLL   CK+G +VE + V   
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD 365

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M+     PD+V +++++S + + G +  A      ++  G  P+   YT+LIQ  CR   
Sbjct: 366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +  A     EM + GC  DVVTY T++ G CK + +    ++ + M +R + P+  T   
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++  H K   L+  +EL  +M++     DV  YN ++    K+G++  A  +W +M +  
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           + P   S+ ++V+    +G L EA   + EM+ + +   P      +++    R+     
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNI--KPTVMICNSMIKGYCRSGNASD 603

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD--ADVMPQPDTFAKL 566
            +     ++++G   +  ++   I+      ++ +A      M +    ++P   T+  +
Sbjct: 604 GESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSI 663

Query: 567 MRGLKKLYNRQIAAEITEKVRKM 589
           + G  +  N+   AE+   +RKM
Sbjct: 664 LHGFCR-QNQMKEAEVV--LRKM 683



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 3/322 (0%)

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
           KE   +    ++ IL++ +    M+  A+ + +EM + GC  D   +  +L  LCK   +
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461

Query: 226 KEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            EA KLF+EM ER   P     T L+ G CK G L  A  +  +MK+     D+V YN L
Sbjct: 462 GEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           L G+ ++G +  A E+  +M  K   P   SY++L+ ALC    + EA R + EM     
Sbjct: 522 LDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNI 581

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           +  V+   ++I G+C+S         L+ MI  G +P+ ++Y  ++    ++E + +   
Sbjct: 582 KPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFG 641

Query: 405 LMGEMR--KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           L+ +M   + G VPDV  YN ++   C+  ++KEA  V  +M    ++P   ++  M++G
Sbjct: 642 LVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMING 701

Query: 463 FLGQGCLIEACEYFKEMVGRGL 484
           F+ Q  L EA     EM+ RG 
Sbjct: 702 FVSQDNLTEAFRIHDEMLQRGF 723



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 4/280 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  ++  L K +  G    L  EM  E+     +    IL+        ++ A+E+  +M
Sbjct: 448 YNTILHGLCKRKMLGEADKLFNEM-TERALFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +     D   +  LLD   K   +  A +++ +M  +   P+   ++ L+   C +G L
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  V  +M     +P +++ N+++ GY + G  +D    L++M  +G  P+  SY  L
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626

Query: 320 IQALCRMEKMEEANRAFVEME--RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           I    R E M +A     +ME  + G   DV TY +++ GFC+  ++     +L  MI+R
Sbjct: 627 IYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIER 686

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           G+ P++ TY  ++     ++ L E   +  EM + G  PD
Sbjct: 687 GVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%), Gaps = 9/204 (4%)

Query: 115 GDAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEM--RKEKPQL 171
           G  G++     +WA      +    + Y  L+ +L         + + +EM  +  KP +
Sbjct: 526 GKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTV 585

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           +       +++ +  +         L++M   G  PD   +  L+    +  ++ +A  L
Sbjct: 586 MICNS---MIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGL 642

Query: 232 FDEMRER---FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
             +M E      P +  + S+L+G+C++ ++ EA+ VL +M + G  PD   Y  +++G+
Sbjct: 643 VKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGF 702

Query: 289 AQMGKMTDAFELLKEMRRKGCDPN 312
                +T+AF +  EM ++G  P+
Sbjct: 703 VSQDNLTEAFRIHDEMLQRGFSPD 726


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 209/425 (49%), Gaps = 15/425 (3%)

Query: 66  SHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCG-DAGN--LGY 122
           +HN     V+ I+ I+    S    L+ +L+ +GV L   L ++V+ R     GN     
Sbjct: 35  NHNNKDIQVDAIYNIISNSTSS-QNLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQAL 93

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
            ++ + + +  + HS      ++  L + RKF  +W ++ +++++   LIT     +++ 
Sbjct: 94  DFFNFTADRRGFYHSSYSLDTMLYILGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLG 153

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242
           R A    V+  +E   +  +     D   F  LL  LC+  S+ +A  ++  +++ F+P+
Sbjct: 154 RVAKVCSVRMTVESFWKFKRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPN 213

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L+ F  LL GW       EA+    +MK+ G +PDIV YN+L+  + +  ++  A+ ++ 
Sbjct: 214 LQTFNILLSGWKSSE---EAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVA 270

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            MR +   P+  +YT +I  L  + + ++A     EM+  GC  DV  Y  +I  +C ++
Sbjct: 271 RMREEDILPDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAK 330

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           ++D  Y ++  M  +G+ PN  +Y           +L    +  G M   GC+P+  +  
Sbjct: 331 RLDAAYSLMAEMESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCM 390

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC----LIEACEYFKE 478
            +I+L  +  +++ A+ +WN+M    +  G  S++++    LG  C    L+EA + F +
Sbjct: 391 FLIKLFKRHEKVEMALQLWNDM----VEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQ 446

Query: 479 MVGRG 483
           MV +G
Sbjct: 447 MVEKG 451



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 155/311 (49%), Gaps = 8/311 (2%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D   +N LL    Q   M+DA  +   ++ KG  PN  ++ +L+      +  EEA   +
Sbjct: 179 DTSCFNALLRTLCQEKSMSDARNVYHHLK-KGFRPNLQTFNILLSG---WKSSEEAELFY 234

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM+  G + D+VTY +LI  FCK R++++ Y ++  M +  ILP+ +TY  I+      
Sbjct: 235 EEMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLV 294

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            + ++  +++ EM++ GC PDV+ YN VIR  C    L  A ++  EME+  +SP   S+
Sbjct: 295 GQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMSPNATSY 354

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            +    F     L  + +++  M+  G L  P   +   L+    R +KVEMA  +W+ +
Sbjct: 355 NLFFRVFSWSNDLRNSWDFYGRMMDAGCL--PNTQSCMFLIKLFKRHEKVEMALQLWNDM 412

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
           V KG    +    + +  L   G + EA    L M++    P   +F ++ + L +L N+
Sbjct: 413 VEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKPSNVSFRRI-KVLMELANK 471

Query: 577 QIAA-EITEKV 586
             A   ++EK+
Sbjct: 472 HDAIRNLSEKM 482



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 49/325 (15%)

Query: 126 MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE-KPQLITTEVFVILMRRF 184
            W  K+   V     + AL+++L + +       +   ++K  +P L T   F IL+  +
Sbjct: 168 FWKFKRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQT---FNILLSGW 224

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
            S+   ++A    +EM + G +PD   +  L+D  CK   +++A  +   MRE    P +
Sbjct: 225 KSS---EEAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDV 281

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             +TS++ G    G+  +A+ +L +MK+ G  PD+  YN ++  Y    ++  A+ L+ E
Sbjct: 282 ITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAE 341

Query: 304 MRRKG-----------------------------------CDPNANSYTVLIQALCRMEK 328
           M  KG                                   C PN  S   LI+   R EK
Sbjct: 342 MESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEK 401

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +E A + + +M   G  + ++    L+   C   K+    +    M+++G  P+ +++  
Sbjct: 402 VEMALQLWNDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKPSNVSFRR 461

Query: 389 IML------AHEKKEELEECVELMG 407
           I +       H+    L E + + G
Sbjct: 462 IKVLMELANKHDAIRNLSEKMAIFG 486


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 211/459 (45%), Gaps = 17/459 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y   +  LS+ R+  + W  ++ M  ++     T  F  +++ F     V++AIEV D M
Sbjct: 249 YGTYLYGLSRTRQVASAWNFLQ-MLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAM 307

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
            K G  PD   +  L+D LCK   V     L  EM R    P+L  ++SLL+G C+ GK+
Sbjct: 308 KKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKV 367

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +  ++++ GF+ D +VY+ +L+G  Q   +    +L  +M      P+A +YT L
Sbjct: 368 ELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSL 427

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I A CR   + +A   F  M  SG   +VVT T L+ GF K R ID  +  L  + Q GI
Sbjct: 428 IYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGI 487

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +PN   Y  I+    K  + +    +  +M K G VPD   Y+++I    K  +L EA  
Sbjct: 488 VPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFR 547

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++++M      P   ++  +++G      L E    FK M+  GL   P      +L+  
Sbjct: 548 LFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGL--TPDRILYTSLIVC 605

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL--DMMDADVM 557
             +   ++ A +++  +   G   + + +T  I   FS     +  + CL  +M +  + 
Sbjct: 606 YCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGG-FSKVLAMDG-AQCLMEEMTNKGLT 663

Query: 558 PQPDTFAKLMRGLKKL---------YNRQIAAEITEKVR 587
           P   T+  L+ G  K+         YN  + A IT   +
Sbjct: 664 PSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPDAK 702



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 209/465 (44%), Gaps = 9/465 (1%)

Query: 110 VINRCGDAGNLGYRYY-MWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           +++ CG +G   +    M  S     +    VY  +I+   ++  F        E +K  
Sbjct: 112 IVDYCGSSGRELFELAPMLVSSLGGSMTLLQVYATIIRIFVELSMFEDALLTYTEAKKVG 171

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV--K 226
            +L   ++   L++       +  A  + D+M   G  P+ + +  L+ A      +   
Sbjct: 172 VEL---QLCNFLLKCLVERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLA 228

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           EA +L  EM  +  KP+   + + LYG  +  ++  A   L  +   G   +   +N ++
Sbjct: 229 EAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVI 288

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G+ + G++ +A E+   M++ G  P+ +SY++L+  LC+   +       VEM R+G  
Sbjct: 289 QGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIA 348

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             +V+Y++L+ G C++ K++  +E+   + ++G   + + Y  I+    +   +E   +L
Sbjct: 349 PTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDL 408

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             +M     VPD  NY  +I   C+   L +A+ V+  M  + +SP   +  ++V GF  
Sbjct: 409 WNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGK 468

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           +  + EA  +  ++   G++  P     + ++N L +  K +    +++ ++ +G   + 
Sbjct: 469 ERMIDEAFLFLHKVRQFGIV--PNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDT 526

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             ++I I S      + EA      M+D    P   T+  L+ GL
Sbjct: 527 VVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGL 571



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 3/285 (1%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-R 238
           L+  F   R +  A+ V + M   G  P+      L+D   K   + EA     ++R+  
Sbjct: 427 LIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFG 486

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P+L  +  ++ G CK  K      +   M   G+ PD VVY+ ++  + +  K+ +AF
Sbjct: 487 IVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAF 546

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +M  +G  PN  +YT LI  LC  +++ E    F  M   G   D + YT+LI  +
Sbjct: 547 RLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCY 606

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   +    EI   M + G+  +   Y  ++    K   ++    LM EM   G  P V
Sbjct: 607 CKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSV 666

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
             Y  +I    K+G+ ++A   +N M  A ++P  D+ +  + GF
Sbjct: 667 VTYTNLIIGYFKIGDERKANMTYNSMLQAGITP--DAKLSCILGF 709


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 204/461 (44%), Gaps = 43/461 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           YR L+    +  +      + ++M      P + +    V  +R+      + KA  +  
Sbjct: 268 YRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGH---IDKAFRLAC 324

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            + + G  P+ F    L+D LCK+   +EA +LF  M  R  +P+   +  L++  CK G
Sbjct: 325 HLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRG 384

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +A  +  +M++ G    +  YN+L++GY Q      A  LL EM  KG  P+A SY+
Sbjct: 385 MMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYS 444

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  LCR   +  A     EM R+G   +V T+TTLISGFCK   +D    + D MI  
Sbjct: 445 PLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDS 504

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA--------- 428
            ++PN++T+  ++  + +   + +  +L  +M   G  PD   Y  +I +          
Sbjct: 505 SVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKA 564

Query: 429 --------------------------CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
                                     CK G L E  ++W+EM A  +     SF V+V+ 
Sbjct: 565 KEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYA 624

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
            L      +    F+EM  +G+     + T    ++S  + + +  A + W  ++  GC 
Sbjct: 625 ALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHS--KEENIVQALNCWDKMIADGCS 682

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            NV  +T+ I+ L  +G++  A   C +M+    +P   T+
Sbjct: 683 PNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTY 723



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 206/445 (46%), Gaps = 11/445 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y  LI SL K         + + MR EK   +T   +  L+  +      
Sbjct: 367 EPNEV----TYAILIHSLCKRGMMDDALCMFDRMR-EKGIRVTVYPYNSLINGYCQHDNF 421

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
            +A  +L+EM + G  P    +  L+  LC+   +  A +L  EM R     ++  FT+L
Sbjct: 422 HQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTL 481

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+CK+G + EA  +  +M D+   P+ V +N ++ GY ++G +  AF+L  +M  +G 
Sbjct: 482 ISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL 541

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y  LI  LC      +A     ++E +    +  + TTL+ GFCK  ++   Y 
Sbjct: 542 TPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYH 601

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           I D M  RG+  + +++  I+ A  K  + E+   L  EM++ G  PD   +  +I +  
Sbjct: 602 IWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHS 661

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM-VGRGLLSAP 488
           K   + +A+N W++M A   SP   ++ V+++     G L  A    +EM VGR L   P
Sbjct: 662 KEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFL---P 718

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T    L+ L    ++E AK V    + +GC  N   +   I      G ++ A    
Sbjct: 719 NSFTYNCFLDFLANEGELEKAK-VLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLM 777

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKL 573
            +  ++   P   +++ ++  L K+
Sbjct: 778 QNNTESGFFPDCISYSTIINELCKV 802



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 193/405 (47%), Gaps = 4/405 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY A I++  ++R       L+  M + K    +   + +LM        V +A+EV + 
Sbjct: 197 VYTAGIRAYCEIRNLDGARGLLTRM-ESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNS 255

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
           M + G   DE  +  L+   C+   ++ A ++ D+M    F PS+   + ++ G  K G 
Sbjct: 256 MVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGH 315

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  +   + + G  P++   N L+    +  +  +A  L + M  +G +PN  +Y +
Sbjct: 316 IDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAI 375

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI +LC+   M++A   F  M   G    V  Y +LI+G+C+     +   +L+ M+++G
Sbjct: 376 LIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKG 435

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+  +Y  ++    +K +L   +EL  EM + G   +V  +  +I   CK G + EA 
Sbjct: 436 LAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAA 495

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++++M  +S+ P   +F VM+ G+   G + +A + + +MV RGL   P   T ++L++
Sbjct: 496 RLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL--TPDNYTYRSLIS 553

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
            L        AK+    +      LN ++ T  ++     G + E
Sbjct: 554 VLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTE 598



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 157/318 (49%), Gaps = 5/318 (1%)

Query: 170 QLITTEV-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
            ++  EV F +++  +     V+KA ++ D+M   G  PD + +  L+  LC      +A
Sbjct: 505 SVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKA 564

Query: 229 AKLFDEMRERFKPSLRHF--TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            +  D++ E     L  F  T+L+YG+CKEG+L E  ++  +M+  G + D++ +  ++ 
Sbjct: 565 KEFVDDL-ENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVY 623

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
              ++        L +EM+ KG  P+   +T +I    + E + +A   + +M   GC  
Sbjct: 624 AALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSP 683

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           +VVTYT LI+  CKS  +     + + M+    LPN  TY   +     + ELE+   L 
Sbjct: 684 NVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLH 743

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             + + GC+ +   +N +I+  CK G+++ A+++      +   P   S+  +++     
Sbjct: 744 ATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKV 802

Query: 467 GCLIEACEYFKEMVGRGL 484
           G + +A + + EM+ +GL
Sbjct: 803 GDINKAFQLWNEMLYKGL 820



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 175/431 (40%), Gaps = 44/431 (10%)

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
           +I +R+FA AR      ++ DEM +     DE+V+   + A C+  ++  A  L   M  
Sbjct: 170 LIKIRQFALAR------DLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMES 223

Query: 238 R-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM----- 291
           +  K S   +  L+YG C+  +++EA  V   M + G   D V Y  L+ G+ +      
Sbjct: 224 KGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEM 283

Query: 292 ------------------------------GKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
                                         G +  AF L   +   G  PN  +   LI 
Sbjct: 284 ALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALID 343

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
            LC+  +  EA R F  M   G E + VTY  LI   CK   +D    + D M ++GI  
Sbjct: 344 KLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRV 403

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
               Y  ++  + + +   +   L+ EM + G  P  ++Y+ +I   C+ G+L  A+ + 
Sbjct: 404 TVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELH 463

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            EM    +S    +F  ++ GF   G + EA   F +M+   ++  P   T   ++    
Sbjct: 464 REMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVV--PNEVTFNVMIEGYC 521

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           R   V  A  ++  +V +G   + Y +   I  L       +A  +  D+ +  V+    
Sbjct: 522 RVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSF 581

Query: 562 TFAKLMRGLKK 572
           +   LM G  K
Sbjct: 582 SLTTLMYGFCK 592



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 171/397 (43%), Gaps = 39/397 (9%)

Query: 242 SLRHFTS--LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           +++ +T+  +L+   K  +   A+ +  +M    F  D  VY   +  Y ++  +  A  
Sbjct: 157 AMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARG 216

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           LL  M  KG   +A  Y VL+  LCR  ++ EA      M   G  AD VTY TL+ GFC
Sbjct: 217 LLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFC 276

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           ++ +++   E+ D M+    +P+  +   ++    K+  +++   L   + ++G VP++ 
Sbjct: 277 RTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLF 336

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             N +I   CK    +EA  ++  M    L P   ++ +++H    +G + +A   F  M
Sbjct: 337 ACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRM 396

Query: 480 --------------------------VGRGLLS-------APQYGTLKALLNSLLRAQKV 506
                                       RGLL+       AP   +   L+  L R   +
Sbjct: 397 REKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDL 456

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             A ++   +   G   NVY +T  I     +G++ EA      M+D+ V+P   TF  +
Sbjct: 457 ASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVM 516

Query: 567 MRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRR 603
           + G  ++ N + A ++ +++     +R +T   Y  R
Sbjct: 517 IEGYCRVGNVRKAFQLYDQM----VDRGLTPDNYTYR 549



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   + +L+     +  +  A  + +EM      P+ F + C LD L     +++A
Sbjct: 683 PNVVT---YTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKA 739

Query: 229 AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
             L   + E    +   F +L+ G+CK G++  A  ++    ++GF PD + Y+ +++  
Sbjct: 740 KVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINEL 799

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
            ++G +  AF+L  EM  KG  P+  +Y +LI+
Sbjct: 800 CKVGDINKAFQLWNEMLYKGLKPDIVAYNILIR 832



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 2/189 (1%)

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           S + + R+     ++L   +  GI   Q T   I+ A  K  +     +L  EM +    
Sbjct: 133 SSYLRLRRARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFP 192

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            D   Y   IR  C++  L  A  +   ME+  +      + V+++G      ++EA E 
Sbjct: 193 LDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEV 252

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
              MV RG+++     T + L+    R +++EMA ++   +++     +V + +  +  L
Sbjct: 253 KNSMVERGIVADEV--TYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGL 310

Query: 536 FSNGHVKEA 544
              GH+ +A
Sbjct: 311 RKRGHIDKA 319



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 41/289 (14%)

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           S Y ++ +  DA ++L+     G      + + ++ AL ++ +   A   F EM +    
Sbjct: 133 SSYLRLRRARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFP 192

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            D   YT  I  +C+ R +D    +L  M  +G+                          
Sbjct: 193 LDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGV-------------------------- 226

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
                K   VP    YNV++   C+   + EAV V N M    +     ++  +V+GF  
Sbjct: 227 -----KGSAVP----YNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGF-- 275

Query: 466 QGCLIEACEYFKEMVGR--GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             C  E  E   EM      L   P   +   +++ L +   ++ A  +   +   G   
Sbjct: 276 --CRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVP 333

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           N++A    I  L  +   +EA      M +  + P   T+A L+  L K
Sbjct: 334 NLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCK 382


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 9/464 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+K L++ ++ G  + +++EM K+   P +I   V+  L+  F  A  + KAIE+ D
Sbjct: 333 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI---VYNNLIDSFIEAGSLNKAIEIKD 389

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M   G       +  L+   CKN     A +L  EM    F  +   FTS++   C   
Sbjct: 390 LMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL 449

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A   + +M      P   +   L+SG  + GK + A EL  +   KG   +  +  
Sbjct: 450 MFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 509

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC   K++EA R   E+   GC  D V+Y TLISG C  +K+D  +  LD M++R
Sbjct: 510 ALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR 569

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+  TY  ++       ++EE ++   + ++ G +PDV  Y+V+I   CK    +E 
Sbjct: 570 GLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEG 629

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              ++EM + ++ P T  +  ++  +   G L  A E  ++M  +G+  +P   T  +L+
Sbjct: 630 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGI--SPNSATYTSLI 687

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             +    +VE AK ++  +  +G E NV+ +T  I      G + +      +M   +V 
Sbjct: 688 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 747

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVR-KMAAERQITFKMY 600
           P   T+  ++ G  +  N   A+ +  ++R K      IT+K +
Sbjct: 748 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 791



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 196/409 (47%), Gaps = 7/409 (1%)

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           EE+R++   L+  EV+    +R         A++V   +   G  P +     LL +L +
Sbjct: 184 EEIRRKMSDLLI-EVYCTQFKRDGCYL----ALDVFPVLANKGMFPSKTTCNILLTSLVR 238

Query: 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            +  ++  + FD + +   P +  FT+ +  +CK GK+ EA  +  +M++AG  P++V +
Sbjct: 239 ANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTF 298

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++ G    G+  +AF   ++M  +G +P   +Y++L++ L R +++ +A     EM +
Sbjct: 299 NTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTK 358

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   +V+ Y  LI  F ++  +++  EI D M+ +G+     TY  ++  + K  + + 
Sbjct: 359 KGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADN 418

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L+ EM  IG   +  ++  VI L C       A+    EM   ++SPG      ++ 
Sbjct: 419 AERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 478

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G    G   +A E + + + +G +   +  T  ALL+ L  A K++ A  +   I+ +GC
Sbjct: 479 GLCKHGKHSKALELWFQFLNKGFVVDTR--TSNALLHGLCEAGKLDEAFRIQKEILGRGC 536

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  ++   I        + EA  +  +M+   + P   T++ L+ GL
Sbjct: 537 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 585



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 182/413 (44%), Gaps = 3/413 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F   +  F     V++A+++  +M + G  P+   F  ++D L       EA    ++M
Sbjct: 262 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 321

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            ER  +P+L  ++ L+ G  +  ++ +A +VL +M   GF P+++VYNNL+  + + G +
Sbjct: 322 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 381

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A E+   M  KG    +++Y  LI+  C+  + + A R   EM   G   +  ++T++
Sbjct: 382 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 441

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I   C     D     +  M+ R + P       ++    K  +  + +EL  +    G 
Sbjct: 442 ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF 501

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           V D    N ++   C+ G+L EA  +  E+          S+  ++ G  G+  L EA  
Sbjct: 502 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 561

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           +  EMV RGL   P   T   L+  L    KVE A   W      G   +VY +++ I  
Sbjct: 562 FLDEMVKRGL--KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDG 619

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
                  +E   +  +MM  +V P    +  L+R   +     +A E+ E ++
Sbjct: 620 CCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMK 672



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 186/405 (45%), Gaps = 4/405 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK   K  +      L++EM       +    F  ++    S  M   A+  + EM
Sbjct: 403 YNTLIKGYCKNGQADNAERLLKEMLSIGFN-VNQGSFTSVICLLCSHLMFDSALRFVGEM 461

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPSLRHFTSLLYGWCKEGKL 259
                 P   +   L+  LCK+    +A +L F  + + F    R   +LL+G C+ GKL
Sbjct: 462 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 521

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  ++   G   D V YN L+SG     K+ +AF  L EM ++G  P+  +Y++L
Sbjct: 522 DEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 581

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L  M K+EEA + + + +R+G   DV TY+ +I G CK+ + +   E  D M+ + +
Sbjct: 582 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 641

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN + Y H++ A+ +   L   +EL  +M+  G  P+ + Y  +I+    +  ++EA  
Sbjct: 642 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 701

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ EM    L P    +  ++ G+   G +++     +EM  + +   P   T   ++  
Sbjct: 702 LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV--HPNKITYTVMIGG 759

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             R   V  A  + + +  KG   +   +  +I+     G V EA
Sbjct: 760 YARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 804



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 141/269 (52%), Gaps = 1/269 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           + +A   LDEM K G +PD + +  L+  L   + V+EA + +D+  R    P +  ++ 
Sbjct: 556 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSV 615

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK  +  E +    +M     +P+ VVYN+L+  Y + G+++ A EL ++M+ KG
Sbjct: 616 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 675

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN+ +YT LI+ +  + ++EEA   F EM   G E +V  YT LI G+ K  ++ +  
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 735

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  M  + + PN++TY  ++  + +   + E   L+ EMR+ G VPD   Y   I   
Sbjct: 736 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 795

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFV 457
            K G + EA    +E   A++  G +  +
Sbjct: 796 LKQGGVLEAFKGSDEENYAAIIEGWNKLI 824



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN  H    Y ALI    K+ +   V  L+ EM  +   P  IT   + +++  +A   
Sbjct: 712 EPNVFH----YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKIT---YTVMIGGYARDG 764

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            V +A  +L+EM + G  PD   +   +    K   V EA K  DE          ++ +
Sbjct: 765 NVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE---------ENYAA 815

Query: 249 LLYGWCK 255
           ++ GW K
Sbjct: 816 IIEGWNK 822


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 219/464 (47%), Gaps = 4/464 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  ++  L K  K      L+ +M K    L     F IL+  +     +K+A +V+D M
Sbjct: 250 YNTILDVLCKKGKLNEARDLLLDM-KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLM 308

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            +    PD + +  L+  LCK+  + EA +L DEM   +  P +  + +L+ G       
Sbjct: 309 AQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSS 368

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
           ++   ++ +M+  G +P+ V YN ++  Y + GKM +A   L++M   G  P+  ++  L
Sbjct: 369 LKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTL 428

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+  ++ EA R   EM R G + + VT  T++   C  RK+D  Y++L S  +RG 
Sbjct: 429 INGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGY 488

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             ++++Y  +++ + K  +  E ++L  EM++   +P +  YN +I   C  G+  ++++
Sbjct: 489 FVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSID 548

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
             NE+  + L P   ++  ++ G+  +G + +A ++  +MV +     P   T   LL  
Sbjct: 549 KLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSF--KPDLFTCNILLRG 606

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L     ++ A  +++  ++KG  ++   +   I  L      +EA     +M +  + P 
Sbjct: 607 LCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPD 666

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRR 603
             T+  ++  L      + A E   ++ +    +  T  + KR+
Sbjct: 667 CYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRK 710



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 198/405 (48%), Gaps = 7/405 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP L+T    +  + R+ S   V  +  +  ++ K G + +   F  L+   C  + + E
Sbjct: 171 KPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSE 230

Query: 228 AAKLFDEMRERFK--PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           A  L  +M++ F   P    + ++L   CK+GKL EA+ +L+ MK+ G  P+   +N L+
Sbjct: 231 AIGLIGKMKD-FSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILV 289

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           SGY ++G + +A +++  M +    P+  +Y +LI  LC+  K++EA R   EME     
Sbjct: 290 SGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLL 349

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            DVVTY TLI+G        + +E++D M  +G+ PN +TY  ++  + K+ +++     
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNE 409

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + +M + G  PD   +N +I   CK G L EA  + +EM    L   + +   ++H   G
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCG 469

Query: 466 QGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           +  L +A +       RG  +    YGTL  ++      + VE  K +W  +  K    +
Sbjct: 470 ERKLDDAYKLLSSASKRGYFVDEVSYGTL--IMGYFKDGKSVEAMK-LWDEMKEKEIIPS 526

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  +   I  L  +G   ++     +++++ ++P   T+  ++ G
Sbjct: 527 IITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILG 571



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 133/324 (41%), Gaps = 11/324 (3%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE---ANRA 335
           V+ +  +  Y    +   A ++   M+R    PN  +   LI AL R         +   
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAI 199

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F ++ + G + +  T+  LI G C   K+     ++  M      P+ ++Y  I+    K
Sbjct: 200 FSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCK 259

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           K +L E  +L+ +M+  G +P+ + +N+++   CKLG LKEA  V + M   ++ P   +
Sbjct: 260 KGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWT 319

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           + +++ G    G + EA     EM    LL  P   T   L+N            ++   
Sbjct: 320 YNMLIGGLCKDGKIDEAFRLKDEMENLKLL--PDVVTYNTLINGCFDCSSSLKGFELIDK 377

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +  KG + N   + + +      G +  A +    M ++   P   TF  L+ G  K   
Sbjct: 378 MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCK--- 434

Query: 576 RQIAAEITEKVRKMAAERQITFKM 599
              A  ++E  R M    +   KM
Sbjct: 435 ---AGRLSEAFRMMDEMSRKGLKM 455



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 24/198 (12%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTS 248
           V+KA +  ++M K   +PD F    LL  LC    + +A KLF+    + K      + +
Sbjct: 578 VEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNT 637

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CKE +  EA  +L +M++    PD   YN +LS  A  G+M +A E +  +  +G
Sbjct: 638 IISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQG 697

Query: 309 -----------------------CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
                                   DPN+ +++  I  LC   K ++A     E  + G  
Sbjct: 698 KLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGIT 757

Query: 346 ADVVTYTTLISGFCKSRK 363
               TY +L+ G  K RK
Sbjct: 758 LHKSTYISLMEGLIKRRK 775


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 216/483 (44%), Gaps = 36/483 (7%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S+  Y  ++  L++        AL   M        TT  F +  R         +A+ +
Sbjct: 138 SFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALAL 197

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L  M ++GC PD  ++  ++ ALC    V EAA L +EM        +  F  ++ G C 
Sbjct: 198 LRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCG 257

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM------------------------ 291
            G++ EA  ++ +M   G  P ++ Y  LL G  ++                        
Sbjct: 258 LGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV 317

Query: 292 -------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
                  GK+ +A EL + M  KGC P+A++Y++L+  LC++ ++  A R   EME+ G 
Sbjct: 318 IGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGF 377

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
             +VVTYT ++  FCK+   D    +L+ M  +G+  N   Y  ++ A  K   ++E + 
Sbjct: 378 APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMG 437

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+ EMR  GC PD+ +YN +I   C   +++EA +++  +    +     ++  ++H  L
Sbjct: 438 LIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALL 497

Query: 465 GQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             G   +A    KEM+  G  L    Y     L+ ++ +   V+ +  +   +  KG + 
Sbjct: 498 RDGRWQDAVRLAKEMILHGCSLDVVSY---NGLIKAMCKDGNVDRSLVLLEEMAEKGIKP 554

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           N  ++ I I  L     V++A      M++  + P   T+  L+ GL K+     A  + 
Sbjct: 555 NNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLL 614

Query: 584 EKV 586
           EK+
Sbjct: 615 EKL 617



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 169/357 (47%), Gaps = 41/357 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  L++ L ++R+     A++  +    P+L       ++    A  ++ + A E+ + 
Sbjct: 282 TYGFLLQGLCRVRQADEARAMLGRV----PELNVVLFNTVIGGCLAEGKLAE-ATELYET 336

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   GC+PD   +  L+  LCK   +  A +L  EM ++ F P++  +T +L+ +CK G 
Sbjct: 337 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 396

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             + + +L +M   G   +   YN ++    + G+M +A  L++EMR +GC+P+  SY  
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 456

Query: 319 LIQALCRMEKMEEANRAF-----------------------------------VEMERSG 343
           +I  LC  E+MEEA   F                                    EM   G
Sbjct: 457 IIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG 516

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C  DVV+Y  LI   CK   +DR   +L+ M ++GI PN ++Y  ++    K+  + + +
Sbjct: 517 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 576

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           EL  +M   G  PD+  YN +I   CK+G +  A+N+  ++   ++ P   ++ +++
Sbjct: 577 ELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 176/375 (46%), Gaps = 34/375 (9%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK---------------------------- 221
           V++A  ++D M   GC P    +G LL  LC+                            
Sbjct: 261 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 320

Query: 222 ---NSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
                 + EA +L++ M  +  +P    ++ L++G CK G++  A  +L +M+  GF P+
Sbjct: 321 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 380

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V Y  +L  + + G   D   LL+EM  KG   N+  Y  +I ALC+  +M+EA     
Sbjct: 381 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 440

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM   GC  D+ +Y T+I   C + +++    + +++++ G++ N +TY  I+ A  +  
Sbjct: 441 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
             ++ V L  EM   GC  DV +YN +I+  CK G +  ++ +  EM    + P   S+ 
Sbjct: 501 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +++     +  + +A E  K+M+ +GL  AP   T   L+N L +   +  A ++   + 
Sbjct: 561 ILISELCKERRVRDALELSKQMLNQGL--APDIVTYNTLINGLCKMGWMHAALNLLEKLH 618

Query: 518 TKGCELNVYAWTIWI 532
            +    ++  + I I
Sbjct: 619 NENVHPDIITYNILI 633



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 184/383 (48%), Gaps = 11/383 (2%)

Query: 192 KAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTS 248
           +A+ +LD++P+ +G +P    +  +L  L +     +A  L+  M  R+R  P+   F  
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
                C+ G+  EA  +L  M   G  PD V+Y  ++      G +T+A  LL EM   G
Sbjct: 181 AARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG 240

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  + N++  +++ +C + ++ EA R    M   GC   V+TY  L+ G C+ R+ D   
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEAR 300

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  + +  ++    T +   LA  K  E  E  E MG     GC PD   Y++++   
Sbjct: 301 AMLGRVPELNVVLFN-TVIGGCLAEGKLAEATELYETMGLK---GCQPDAHTYSILMHGL 356

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSA 487
           CKLG +  AV +  EME    +P   ++ +++H F   G   +     +EM  +GL L++
Sbjct: 357 CKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 416

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
             Y     ++ +L +  +++ A  +   + ++GC  ++ ++   I+ L +N  ++EA   
Sbjct: 417 QGY---NGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473

Query: 548 CLDMMDADVMPQPDTFAKLMRGL 570
             ++++  V+    T+  ++  L
Sbjct: 474 FENLLEEGVVANGITYNTIIHAL 496



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 157/320 (49%), Gaps = 10/320 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+  H+Y +   L+  L K+ + G+   L+ EM K+   P ++T   + I++  F    
Sbjct: 343 QPD-AHTYSI---LMHGLCKLGRIGSAVRLLREMEKKGFAPNVVT---YTIVLHSFCKNG 395

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
           M      +L+EM   G   +   +  ++ ALCK+  + EA  L  EMR +   P +  + 
Sbjct: 396 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 455

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++Y  C   ++ EA+++   + + G   + + YN ++    + G+  DA  L KEM   
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC  +  SY  LI+A+C+   ++ +     EM   G + + V+Y  LIS  CK R++   
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 575

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+   M+ +G+ P+ +TY  ++    K   +   + L+ ++      PD+  YN++I  
Sbjct: 576 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 635

Query: 428 ACKLGELKEAVNVWNEMEAA 447
            CK+  L +A  + N   AA
Sbjct: 636 HCKVRLLDDAAMLLNRAMAA 655



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 3/181 (1%)

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGC 468
           R+ G  P   +YNVV+ +  +     +A+ ++  M     + P T +F V        G 
Sbjct: 131 RRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGR 190

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
             EA    + M   G +  P     + ++++L     V  A  + + ++  GC  +V  +
Sbjct: 191 ADEALALLRGMARHGCV--PDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 248

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              +  +   G V+EA      MM    MP   T+  L++GL ++     A  +  +V +
Sbjct: 249 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE 308

Query: 589 M 589
           +
Sbjct: 309 L 309


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 212/457 (46%), Gaps = 43/457 (9%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           Y      +  LI  L    K      L+  M +   +P ++T    V  + +     +  
Sbjct: 131 YEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSL-- 188

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+++L +M +   + D F +  ++D+LC++  +  A  LF EM  +  K SL  + SL+
Sbjct: 189 -ALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLV 247

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK GK  +   +L  M      P+++ +N L+  + + GK+ +A EL KEM  KG  
Sbjct: 248 GGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGIS 307

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  L+   C   ++ EAN     M R+ C  D+VT+T+LI G+CK +++D   ++
Sbjct: 308 PNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKL 367

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
              + +RG++ N +TY  ++    +  +LE   EL  EM  +G +PDV  Y +++   C 
Sbjct: 368 FRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCD 427

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+L++A+ ++ +++ + ++     + +++ G                            
Sbjct: 428 NGKLEKALEIFEDLQKSKMNLDIVMYTIIIEG---------------------------- 459

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                    + +  KVE A +++  +  KG + NV  +T+ I  L   G + EA      
Sbjct: 460 ---------MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRK 510

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           M +    P   T+  L+R   +  +   +A++ E+++
Sbjct: 511 MEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 547



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 181/381 (47%), Gaps = 3/381 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A  VL ++ K G EPD   F  L++ LC  S V EA  L   M E   +P++  + S++ 
Sbjct: 119 AYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVN 178

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G CK G    A  +L +M +   + D+  Y+ ++    + G +  A  L KEM  KG   
Sbjct: 179 GICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 238

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +Y  L+  LC+  K  +  +   +M       +V+T+  LI  F K  K+    E+ 
Sbjct: 239 SLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELY 298

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             MI +GI PN +TY  +M  +  +  L E   ++  M +  C PD+  +  +I+  CK+
Sbjct: 299 KEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKV 358

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             + E + ++ ++    L   T ++ ++V GF   G L  A E F+EMV  G+L  P   
Sbjct: 359 KRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVL--PDVM 416

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T   LL+ L    K+E A +++  +      L++  +TI I  +   G V++A +    +
Sbjct: 417 TYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSL 476

Query: 552 MDADVMPQPDTFAKLMRGLKK 572
               V P   T+  ++ GL K
Sbjct: 477 PCKGVKPNVMTYTVMISGLCK 497



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 6/323 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+  L K  K+     L+++M  RK  P +IT   F +L+  F     +++A E+  
Sbjct: 243 YNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVIT---FNVLIDVFVKEGKLQEANELYK 299

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+   +  L+D  C  + + EA  + D M R    P +  FTSL+ G+CK  
Sbjct: 300 EMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVK 359

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ E   +  ++   G   + V Y+ L+ G+ Q GK+  A EL +EM   G  P+  +Y 
Sbjct: 360 RVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYG 419

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+  LC   K+E+A   F ++++S    D+V YT +I G CK  K++  + +  S+  +
Sbjct: 420 ILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCK 479

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +TY  ++    KK  L E   L+ +M + G  P+   YN +IR   + G+L  +
Sbjct: 480 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTAS 539

Query: 438 VNVWNEMEAASLSPGTDSFVVMV 460
             +  EM++   S    S  +++
Sbjct: 540 AKLIEEMKSCGFSADASSIKMVI 562



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 126/315 (40%), Gaps = 39/315 (12%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG   + K  DA +L +EM R    P+   ++     +   ++         +ME +G
Sbjct: 37  LRSGIVDI-KEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNG 95

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++ T   +I+ FC+  K    Y +L  +++ G  P+  T+  ++     + ++ E V
Sbjct: 96  IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAV 155

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L+  M + GC P+V  YN ++   CK G+   A+++  +M+  ++    D F       
Sbjct: 156 VLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVK--ADVF------- 206

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                                       T   +++SL R   ++ A  ++  + TKG + 
Sbjct: 207 ----------------------------TYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 238

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI- 582
           ++  +   +  L   G   +      DM    ++P   TF  L+    K    Q A E+ 
Sbjct: 239 SLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELY 298

Query: 583 TEKVRKMAAERQITF 597
            E + K  +   IT+
Sbjct: 299 KEMITKGISPNTITY 313


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 196/409 (47%), Gaps = 12/409 (2%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           + H  + +  +I  L    +F     L++ M++EK   +T ++ + + R +        +
Sbjct: 75  FKHDLNTFSLMISKLISANQFRLAETLLDRMKEEKID-VTEDILLSICRAYGRIHKPLDS 133

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           I V  +M  + C+P E  +  +L  L + + +K A + + +MR+    P++     L+  
Sbjct: 134 IRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKA 193

Query: 253 WCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           +CK  G + +A ++   M + G EPD   Y  L++G  +   + +A ELL+EM  KGC P
Sbjct: 194 FCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSP 253

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT +I  LC++  ++EA R   +M+    E +V TY++L+ GFCK+    R  +IL
Sbjct: 254 SVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDIL 313

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + MIQ+ + PN ++Y  ++     + ++ E +E+   M+  G  PD   Y  ++   C +
Sbjct: 314 ELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDV 373

Query: 432 GELKEAVNVWNEMEAASLSPG--TDSFVVMVHGFLGQG-CLIE----ACEYFKEMVGRGL 484
              +EA N  +EM    + P   T S  V  H  +  G C I     A + +  ++ RG+
Sbjct: 374 SRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGI 433

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
             +    T  +LL      + +     +   +V  GC      W+  ++
Sbjct: 434 --SITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVN 480



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 151/332 (45%), Gaps = 43/332 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +++  L +  +  + +    +MRK       T + V++     ++  + KA+ +   M
Sbjct: 152 YISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTM 211

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
             +GCEPD + +G L++ LC+  S+ EA +L  EM  +   PS+  +TS+++G C+   +
Sbjct: 212 SNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNV 271

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +L  MKD   EP++  Y++L+ G+ + G  + A ++L+ M +K   PN  SY+ L
Sbjct: 272 DEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTL 331

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC   K+ EA   F  M+  G + D   Y  +++  C   +       LD M+  GI
Sbjct: 332 LNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGI 391

Query: 380 LPNQLTY-LHIMLAHE-----------------------------------------KKE 397
            PN++T+ LH+   +                                           K+
Sbjct: 392 KPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKK 451

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +L +   ++ EM   GC+P    ++ ++   C
Sbjct: 452 DLPKTSRILDEMVINGCIPQGEMWSTMVNCFC 483



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 159/359 (44%), Gaps = 11/359 (3%)

Query: 225 VKEAAKLFD----EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           +K+A  +FD    E    FK  L  F+ ++       +   A+ +L +MK+   +    +
Sbjct: 57  IKKALIIFDSATAEYANGFKHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDI 116

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
             ++   Y ++ K  D+  +  +M+   C P   SY  ++  L    +++ A R + +M 
Sbjct: 117 LLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMR 176

Query: 341 RSGCEADVVTYTTLISGFCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           + G    V +   LI  FCK S  +D+   +  +M   G  P+  TY  ++    +   +
Sbjct: 177 KMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSI 236

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            E  EL+ EM   GC P V  Y  +I   C+L  + EA+ +  +M+  ++ P   ++  +
Sbjct: 237 VEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSL 296

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + GF   G    A +  + M+ + L   P   +   LLN L    K+  A +++  +  +
Sbjct: 297 MDGFCKTGHSSRARDILELMIQKRL--RPNMISYSTLLNGLCNEGKINEALEIFDRMKLQ 354

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
           G + +   +   ++ L      +EA ++  +M+   + P   T++  +R     +NR I
Sbjct: 355 GFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRT----HNRVI 409



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 113/269 (42%), Gaps = 48/269 (17%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI  L + R       L++EM  +   P ++T   +  ++        V +A+ +L
Sbjct: 222 TYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVT---YTSIIHGLCQLNNVDEAMRLL 278

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           ++M     EP+ F +  L+D  CK      A  + + M ++R +P++  +++LL G C E
Sbjct: 279 EDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNE 338

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN---- 312
           GK+ EA  +  +MK  GF+PD  +Y  +++    + +  +A   L EM   G  PN    
Sbjct: 339 GKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITW 398

Query: 313 --------------------------------------ANSYTVLIQALCRMEKMEEANR 334
                                                  +++  L++  C  + + + +R
Sbjct: 399 SLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSR 458

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRK 363
              EM  +GC      ++T+++ FC  RK
Sbjct: 459 ILDEMVINGCIPQGEMWSTMVNCFCDERK 487



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 3/244 (1%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           +G + D+ T++ +IS    + +      +LD M +  I   +   L I  A+ +  +  +
Sbjct: 73  NGFKHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLD 132

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            + +  +M+   C P   +Y  V+ +  +  +LK A   + +M    + P   S  V++ 
Sbjct: 133 SIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIK 192

Query: 462 GFL-GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            F    G + +A   F+ M   G    P   T   L+N L R + +  AK++   + TKG
Sbjct: 193 AFCKNSGTMDKAMHLFRTMSNHG--CEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKG 250

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C  +V  +T  IH L    +V EA     DM D ++ P   T++ LM G  K  +   A 
Sbjct: 251 CSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRAR 310

Query: 581 EITE 584
           +I E
Sbjct: 311 DILE 314



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 13/203 (6%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +L+    K         ++E M  ++ +P +I+   +  L+    +   + +A+E+ 
Sbjct: 292 TYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMIS---YSTLLNGLCNEGKINEALEIF 348

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--------RERFKPSLRHFTSL 249
           D M   G +PD  ++G +++ LC  S  +EAA   DEM        R  +   +R    +
Sbjct: 349 DRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRV 408

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++G C       A  + + +   G    +  +N+LL  +     +     +L EM   GC
Sbjct: 409 IHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGC 468

Query: 310 DPNANSYTVLIQALCRMEKMEEA 332
            P    ++ ++   C   K  +A
Sbjct: 469 IPQGEMWSTMVNCFCDERKACDA 491


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 173/333 (51%), Gaps = 6/333 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           YR LI  L K+   G   A +E +R+   +L+  +V  +  ++      ++V  A +   
Sbjct: 177 YRTLINGLCKV---GQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYS 233

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM      P    +  L+  LC    +K+A  L  +M  E   P++  F+ L+  +CKEG
Sbjct: 234 EMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEG 293

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK V V M     +P+IV YN+L++GY  + ++  A  +   M + G  P+ +SY+
Sbjct: 294 KVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYS 353

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++ ++EA + F EM       DVVTY +LI G CKS +I    +++  M  R
Sbjct: 354 IMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDR 413

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN +TY  ++ A  K   +++ +EL+ +++     P V  YN++I   CK G LK+A
Sbjct: 414 GQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDA 473

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             V+ ++     +    ++  M+ GF  +G +I
Sbjct: 474 QKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVI 506



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 189/417 (45%), Gaps = 8/417 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           Q N   S   +  ++ SL K   +  V +L  +M        L+T     IL+  F+   
Sbjct: 62  QKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLS---ILINCFSQLG 118

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
               +  V   + K G EPD      L+  LC    + +A    D++    F+ +   + 
Sbjct: 119 HNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYR 178

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+ G CK G+   A  +L ++       D+V+YN ++ G  +   + DAF+   EM  K
Sbjct: 179 TLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAK 238

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              P   +Y  LI  LC M ++++A     +M        V T++ L+  FCK  K+   
Sbjct: 239 RICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEA 298

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +   M+++ + PN +TY  +M  +    E+ +   +   M +IG  PDV +Y+++I  
Sbjct: 299 KNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISG 358

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK+  + EA+ ++ EM    + P   ++  ++ G    G +  A +   EM  RG    
Sbjct: 359 FCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRG--QP 416

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           P   T  +LL++L +   V+ A ++ + +     + +V  + I I+ L  +G +K+A
Sbjct: 417 PNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDA 473



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 152/294 (51%), Gaps = 1/294 (0%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           K A+E+L  +       D  ++  ++D +CK+  V +A   + EM  +R  P++  + +L
Sbjct: 191 KAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTL 250

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G C  G+L +A  +L +M      P +  ++ L+  + + GK+ +A  +   M +K  
Sbjct: 251 ICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDV 310

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y  L+   C + ++ +A   F  M + G   DV +Y+ +ISGFCK + +D   +
Sbjct: 311 KPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMK 370

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + + M  + I P+ +TY  ++    K   +   ++L+GEM   G  P++  YN ++   C
Sbjct: 371 LFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALC 430

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           K   + +A+ +  +++  ++ P   ++ ++++G    G L +A + F++++  G
Sbjct: 431 KNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNG 484



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKK 192
           VHSY +   +I    K++       L EEM  ++  P ++T      L+     +  +  
Sbjct: 349 VHSYSI---MISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNS---LIDGLCKSGRISY 402

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A++++ EM   G  P+   +  LLDALCKN  V +A +L  ++++   +PS+  +  L+ 
Sbjct: 403 ALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILIN 462

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           G CK G+L +A+ V   +   G+  D+  YN ++ G+ + G +   F
Sbjct: 463 GLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVIPQF 509


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 9/464 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+K L++ ++ G  + +++EM K+   P +I   V+  L+  F  A  + KAIE+ D
Sbjct: 322 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI---VYNNLIDSFIEAGSLNKAIEIKD 378

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M   G       +  L+   CKN     A +L  EM    F  +   FTS++   C   
Sbjct: 379 LMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL 438

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A   + +M      P   +   L+SG  + GK + A EL  +   KG   +  +  
Sbjct: 439 MFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 498

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC   K++EA R   E+   GC  D V+Y TLISG C  +K+D  +  LD M++R
Sbjct: 499 ALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR 558

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+  TY  ++       ++EE ++   + ++ G +PDV  Y+V+I   CK    +E 
Sbjct: 559 GLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEG 618

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              ++EM + ++ P T  +  ++  +   G L  A E  ++M  +G+  +P   T  +L+
Sbjct: 619 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGI--SPNSATYTSLI 676

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             +    +VE AK ++  +  +G E NV+ +T  I      G + +      +M   +V 
Sbjct: 677 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 736

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVR-KMAAERQITFKMY 600
           P   T+  ++ G  +  N   A+ +  ++R K      IT+K +
Sbjct: 737 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 780



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 196/409 (47%), Gaps = 7/409 (1%)

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           EE+R++   L+  EV+    +R         A++V   +   G  P +     LL +L +
Sbjct: 173 EEIRRKMSDLLI-EVYCTQFKRDGCYL----ALDVFPVLANKGMFPSKTTCNILLTSLVR 227

Query: 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            +  ++  + FD + +   P +  FT+ +  +CK GK+ EA  +  +M++AG  P++V +
Sbjct: 228 ANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTF 287

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++ G    G+  +AF   ++M  +G +P   +Y++L++ L R +++ +A     EM +
Sbjct: 288 NTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTK 347

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   +V+ Y  LI  F ++  +++  EI D M+ +G+     TY  ++  + K  + + 
Sbjct: 348 KGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADN 407

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L+ EM  IG   +  ++  VI L C       A+    EM   ++SPG      ++ 
Sbjct: 408 AERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 467

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G    G   +A E + + + +G +   +  T  ALL+ L  A K++ A  +   I+ +GC
Sbjct: 468 GLCKHGKHSKALELWFQFLNKGFVVDTR--TSNALLHGLCEAGKLDEAFRIQKEILGRGC 525

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  ++   I        + EA  +  +M+   + P   T++ L+ GL
Sbjct: 526 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 574



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 182/413 (44%), Gaps = 3/413 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F   +  F     V++A+++  +M + G  P+   F  ++D L       EA    ++M
Sbjct: 251 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 310

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            ER  +P+L  ++ L+ G  +  ++ +A +VL +M   GF P+++VYNNL+  + + G +
Sbjct: 311 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 370

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A E+   M  KG    +++Y  LI+  C+  + + A R   EM   G   +  ++T++
Sbjct: 371 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 430

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I   C     D     +  M+ R + P       ++    K  +  + +EL  +    G 
Sbjct: 431 ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF 490

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           V D    N ++   C+ G+L EA  +  E+          S+  ++ G  G+  L EA  
Sbjct: 491 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 550

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           +  EMV RGL   P   T   L+  L    KVE A   W      G   +VY +++ I  
Sbjct: 551 FLDEMVKRGL--KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDG 608

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
                  +E   +  +MM  +V P    +  L+R   +     +A E+ E ++
Sbjct: 609 CCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMK 661



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 186/405 (45%), Gaps = 4/405 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK   K  +      L++EM       +    F  ++    S  M   A+  + EM
Sbjct: 392 YNTLIKGYCKNGQADNAERLLKEMLSIGFN-VNQGSFTSVICLLCSHLMFDSALRFVGEM 450

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPSLRHFTSLLYGWCKEGKL 259
                 P   +   L+  LCK+    +A +L F  + + F    R   +LL+G C+ GKL
Sbjct: 451 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 510

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  ++   G   D V YN L+SG     K+ +AF  L EM ++G  P+  +Y++L
Sbjct: 511 DEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 570

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L  M K+EEA + + + +R+G   DV TY+ +I G CK+ + +   E  D M+ + +
Sbjct: 571 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 630

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN + Y H++ A+ +   L   +EL  +M+  G  P+ + Y  +I+    +  ++EA  
Sbjct: 631 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 690

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ EM    L P    +  ++ G+   G +++     +EM  + +   P   T   ++  
Sbjct: 691 LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV--HPNKITYTVMIGG 748

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             R   V  A  + + +  KG   +   +  +I+     G V EA
Sbjct: 749 YARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 793



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 141/269 (52%), Gaps = 1/269 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           + +A   LDEM K G +PD + +  L+  L   + V+EA + +D+  R    P +  ++ 
Sbjct: 545 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSV 604

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK  +  E +    +M     +P+ VVYN+L+  Y + G+++ A EL ++M+ KG
Sbjct: 605 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 664

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN+ +YT LI+ +  + ++EEA   F EM   G E +V  YT LI G+ K  ++ +  
Sbjct: 665 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 724

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  M  + + PN++TY  ++  + +   + E   L+ EMR+ G VPD   Y   I   
Sbjct: 725 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 784

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFV 457
            K G + EA    +E   A++  G +  +
Sbjct: 785 LKQGGVLEAFKGSDEENYAAIIEGWNKLI 813



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN  H    Y ALI    K+ +   V  L+ EM  +   P  IT   + +++  +A   
Sbjct: 701 EPNVFH----YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKIT---YTVMIGGYARDG 753

Query: 189 MVKKAIEVLDEMPKYGCEPD-----EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
            V +A  +L+EM + G  PD     EF++G L     K   V EA K  DE         
Sbjct: 754 NVTEASRLLNEMREKGIVPDSITYKEFIYGYL-----KQGGVLEAFKGSDE--------- 799

Query: 244 RHFTSLLYGWCK 255
            ++ +++ GW K
Sbjct: 800 ENYAAIIEGWNK 811


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 187/364 (51%), Gaps = 4/364 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI+ L  + KF   + L++EM +     ++  VF +L+       M+ +A E+ DEM
Sbjct: 223 YGSLIRGLCGVGKFLEGFGLVDEMIRRGLD-VSVYVFTVLIDGLCKNGMLVEAREMFDEM 281

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
              G EP+      L+   C   +V  A +LFD + E  FK  +  +   ++G+CK G++
Sbjct: 282 VNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRV 341

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  V  +M   G  P+IV YN+L+    + G+++ A+E++K M R G  P+  +  +L
Sbjct: 342 RDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCIL 401

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+ +++++A   F ++  SG   DV +YT LI G C SR++     +L  M  + +
Sbjct: 402 LDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNL 461

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +P+ +TY  ++    +   +     L+ EM   G +PD   Y++++    K   L EAV 
Sbjct: 462 VPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVF 521

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++N+M    L P    + +M+ G+     + EA   F+EM  + L+  P   T   L N+
Sbjct: 522 LFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLV--PDIVTYTILFNA 579

Query: 500 LLRA 503
           + ++
Sbjct: 580 VFKS 583



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 208/458 (45%), Gaps = 17/458 (3%)

Query: 128 ASKQPNYVHSYDVYRAL------IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
            S  P +++S+  + +L      +  L K  +     AL  +               I++
Sbjct: 20  TSSLPRFINSFHSHSSLAHFNKHLTCLMKTNQHSTAIALFNQNEYNNFITPCIITLTIII 79

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFK 240
             F     V  +  +  ++ K G   D      +L  LC N  V +A +  DE+    F 
Sbjct: 80  TCFFHLGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFS 139

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA------GF--EPDIVVYNNLLSGYAQMG 292
            +   +  L+ G C+ G++ EA  +L  ++        GF  + ++V+Y+ ++    + G
Sbjct: 140 LNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNG 199

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
            + + FE   EM   G  PN  +Y  LI+ LC + K  E      EM R G +  V  +T
Sbjct: 200 FVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFT 259

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            LI G CK+  +    E+ D M+ RG  PN +T   +M  +  K  ++   EL   + + 
Sbjct: 260 VLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEW 319

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G   DV  YNV I   CK+G +++AV V++EM    + P   ++  ++      G +  A
Sbjct: 320 GFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGA 379

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
            E  K M   GL   P   T   LL+ L ++++++ A  +++ +V  G   +V+++TI I
Sbjct: 380 WEIVKTMHRSGL--TPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILI 437

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           H   ++  + EA +   DM   +++P   T++ L+ GL
Sbjct: 438 HGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGL 475



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 131/332 (39%), Gaps = 45/332 (13%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G+  D V  N +L G    G +  A E   E+   G   N  SY +LI  LC   ++ EA
Sbjct: 102 GYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEA 161

Query: 333 NRAF--------VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
                        E +    + +VV Y+ +I   C++  +D  +E  + M+  G+ PN+ 
Sbjct: 162 VNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEF 221

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           T                                   Y  +IR  C +G+  E   + +EM
Sbjct: 222 T-----------------------------------YGSLIRGLCGVGKFLEGFGLVDEM 246

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
               L      F V++ G    G L+EA E F EMV RG    P   T  AL+       
Sbjct: 247 IRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGY--EPNIVTCTALMGGYCLKG 304

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
            V+MA++++  I   G + +V+ + ++IH     G V++A     +M    V+P   T+ 
Sbjct: 305 NVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYN 364

Query: 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
            L+  L K      A EI + + +      I 
Sbjct: 365 SLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIV 396



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI      R+ G    L+ +M  +   P ++T   +  L+     +  +  A  +L+
Sbjct: 433 YTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVT---YSCLIDGLCRSGRISNAWRLLN 489

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  LLDAL K   + EA  LF++M +R  +P +  +T ++ G+CK  
Sbjct: 490 EMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSE 549

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA  +  +M      PDIV Y  L +   + G  +  ++ +  +R     P    Y 
Sbjct: 550 RIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKY- 608

Query: 318 VLIQALCRMEKME 330
             + ALC+ E ++
Sbjct: 609 --LAALCKSEHLD 619


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/474 (24%), Positives = 219/474 (46%), Gaps = 19/474 (4%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           +++ W SK+P Y H+ + + +++  L + R    V+A  + +R            +++++
Sbjct: 93  QFFYWISKRPFYKHNMNCFISMLNRLVRDR----VFAPADHIR------------ILMIK 136

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKP 241
              +   +++  + L+E+   G     +    LL  L K   V+ A  L+ +M     +P
Sbjct: 137 ACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQP 196

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL  F +L+    K+GK+ EA+ +L Q+      PD+  Y +L+ G+ +   +  AF + 
Sbjct: 197 SLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF 256

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M ++GCDPN+ +Y+ LI  LC   +++EA     EM   G E  V TYT  I+  C  
Sbjct: 257 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 316

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
              +   E++  M +RG  PN  TY  ++    +  +LE  + L  +M K G VP+   Y
Sbjct: 317 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 376

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   C  G    A+ +++ ME       T ++  ++ G    G + +A   F++M+ 
Sbjct: 377 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 436

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            G L  P   T   L+N  L    V  A  +   +   GCE + + +   +      G +
Sbjct: 437 MGPL--PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           + A  Y  +M++  + P P ++  L+ G  K     IA  + +++ +M     +
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNV 548



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 202/422 (47%), Gaps = 6/422 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L+T   F  L+   +    V++A  +L ++ +Y   PD F +  L+   C+N ++  
Sbjct: 195 QPSLLT---FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDL 251

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +FD M +E   P+   +++L+ G C EG++ EA  +L +M + G EP +  Y   ++
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 311

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
               +    +A EL+  M+++GC PN  +YT LI  L R+ K+E A   + +M + G   
Sbjct: 312 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 371

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + VTY  LI+  C   +     +I   M   G L N  TY  I+       ++E+ + L 
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 431

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M K+G +P V  YN +I      G +  A  + + M+     P   ++  +V GF   
Sbjct: 432 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A  YF+EMV  GL   P   +  AL++   +  KV++A  +   +   GC  NV 
Sbjct: 492 GKLESASFYFQEMVECGL--NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVE 549

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           ++   I+ L       EA   C  M++  ++P   T+  L+ GL +    Q A +I   +
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 587 RK 588
            K
Sbjct: 610 EK 611



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 208/487 (42%), Gaps = 47/487 (9%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVI 179
           Y+  + +  QP+ +     +  LI  LSK  K      ++ ++ +    P + T   +  
Sbjct: 186 YKQMLNSGIQPSLL----TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFT---YTS 238

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+      R +  A  V D M K GC+P+   +  L++ LC    V EA  + +EM E+ 
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 298

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
            +P++  +T  +   C      EA  ++ +MK  G  P++  Y  L+SG +++GK+  A 
Sbjct: 299 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI 358

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L  +M ++G  PN  +Y  LI  LC   +   A + F  ME  G  A+  TY  +I G 
Sbjct: 359 GLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 418

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C    I++   + + M++ G LP  +TY  ++  +  K  +     L+  M++ GC PD 
Sbjct: 419 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 478

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK- 477
             YN ++    K G+L+ A   + EM    L+P   S+  ++ G    G +  A    K 
Sbjct: 479 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR 538

Query: 478 ----------------------------------EMVGRGLLSAPQYGTLKALLNSLLRA 503
                                             +MV +GLL  P   T   L++ L R 
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLL--PNVITYTTLIDGLCRN 596

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
            + + A  ++  +  + C  N+Y ++  I+ L   G   EA     +M    + P   TF
Sbjct: 597 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 656

Query: 564 AKLMRGL 570
             L+ G 
Sbjct: 657 TSLIDGF 663



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 175/363 (48%), Gaps = 8/363 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI  LS++ K      L  +M KE   P  +T   +  L+           A+++  
Sbjct: 341 YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT---YNALINELCVGGRFSTALKIFH 397

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEG 257
            M  +G   +   +  ++  LC    +++A  LF++M +    P++  + +L+ G+  +G
Sbjct: 398 WMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG 457

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +L  MK+ G EPD   YN L+SG+++ GK+  A    +EM   G +PN  SYT
Sbjct: 458 NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI    +  K++ A      ME  GC  +V +Y  +I+G  K  +     +I D M+++
Sbjct: 518 ALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ 577

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LPN +TY  ++    +    +   ++  +M K  C+P++  Y+ +I   C+ G+  EA
Sbjct: 578 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  EME   L+P   +F  ++ GF+  G +  A    + MV  G    P Y T   LL
Sbjct: 638 EILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMG--CKPNYRTYSVLL 695

Query: 498 NSL 500
             L
Sbjct: 696 KGL 698



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 172/387 (44%), Gaps = 30/387 (7%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALI 145
           SRL KLE+A+     +L+ GL                         PN V     Y ALI
Sbjct: 349 SRLGKLEVAIGLYHKMLKEGLV------------------------PNTV----TYNALI 380

Query: 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
             L    +F     +   M      L  T+ +  +++       ++KA+ + ++M K G 
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHG-SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 439

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
            P    +  L++      +V  AA+L D M+E   +P    +  L+ G+ K GKL  A +
Sbjct: 440 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 499

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
              +M + G  P+ V Y  L+ G+++ GK+  A  LLK M   GC+PN  SY  +I  L 
Sbjct: 500 YFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           +  +  EA +   +M   G   +V+TYTTLI G C++ +    ++I   M +R  LPN  
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLY 619

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           TY  ++    ++ + +E   L+ EM + G  PD   +  +I     LG +  A  +   M
Sbjct: 620 TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 679

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIE 471
                 P   ++ V++ G   +  L+E
Sbjct: 680 VDMGCKPNYRTYSVLLKGLQKECLLLE 706



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 211/479 (44%), Gaps = 45/479 (9%)

Query: 134 YVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           Y  S DV  Y +LI    + R     + + + M KE   P  +T   +  L+    +   
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT---YSTLINGLCNEGR 283

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V +A+++L+EM + G EP  + +   + ALC     +EA +L   M++R  +P+++ +T+
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G  + GKL  A  +  +M   G  P+ V YN L++     G+ + A ++   M   G
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 309 CDPNANSYTVLIQALC-------------RMEKM----------------------EEAN 333
              N  +Y  +I+ LC             +M KM                        A 
Sbjct: 404 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 463

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R    M+ +GCE D  TY  L+SGF K  K++        M++ G+ PN ++Y  ++  H
Sbjct: 464 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGH 523

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K  +++  + L+  M ++GC P+V +YN VI    K     EA  + ++M    L P  
Sbjct: 524 SKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNV 583

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  ++ G    G    A + F +M  R  L  P   T  +L+  L +  K + A+ + 
Sbjct: 584 ITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL--PNLYTYSSLIYGLCQEGKADEAEILL 641

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +  KG   +   +T  I      G +  A      M+D    P   T++ L++GL+K
Sbjct: 642 KEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQK 700


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 189/359 (52%), Gaps = 9/359 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V +++V   +I +L K  K      +ME+M+     P +++    +    +     
Sbjct: 220 QPN-VFTFNV---VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNG 275

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA  VL EM +    P+   F  L+D   K+ ++  + K+F EM ++  KP++  + 
Sbjct: 276 KMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYN 335

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SL+ G C  GK+ EA  +  +M  AG +P+++ YN L++G+ +   + +A ++   ++ +
Sbjct: 336 SLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQ 395

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P    Y +LI A C++ K+++      EMER G   DV TY  LI+G C++  I+  
Sbjct: 396 GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++ D +  +G LP+ +T+  +M  + +K E  +   L+ EM K+G  P    YN+V++ 
Sbjct: 456 KKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKG 514

Query: 428 ACKLGELKEAVNVWNEMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
            CK G LK A N+  +ME    L     S+ V++ G+  +G L +A     EM+ +GL+
Sbjct: 515 YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLV 573



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 185/404 (45%), Gaps = 23/404 (5%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF- 177
           +L  RYY W  K  +   S ++   L+ SL+  +++  + + ++   +         +F 
Sbjct: 82  DLCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFH 141

Query: 178 ---------------VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
                           +L+  +A+    +   E       YG +        L+ AL K 
Sbjct: 142 AISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKE 201

Query: 223 SSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           +   +   ++ EM R + +P++  F  ++   CK GK+ +A+ V+  MK  G  P++V Y
Sbjct: 202 NRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSY 261

Query: 282 NNLLSGYAQMG---KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           N L+ GY ++G   KM  A  +LKEM      PN  ++ +LI    + + +  + + F E
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKE 321

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M     + +V++Y +LI+G C   KI     + D M+  G+ PN +TY  ++    K + 
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDM 381

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L+E +++ G ++  G VP    YN++I   CKLG++ +   +  EME   + P   ++  
Sbjct: 382 LKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           ++ G    G +  A + F ++  +GL   P   T   L+    R
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSKGL---PDLVTFHILMEGYCR 482



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 150/336 (44%), Gaps = 50/336 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVW---ALMEEMRKE--KPQLITTEVFVILMRRFA 185
            PN V     Y  LI    K+   G ++   A+++EM +    P L T   F IL+  F 
Sbjct: 255 SPNVVS----YNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTT---FNILIDGFW 307

Query: 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLR 244
               +  +++V  EM     +P+   +  L++ LC    + EA  + D+M     +P+L 
Sbjct: 308 KDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLI 367

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            + +L+ G+CK   L EA  +   +K  G  P   +YN L+  Y ++GK+ D F L +EM
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
            R+G  P+  +Y  LI  LCR   +E A + F ++   G   D+VT+  L+ G+C+  + 
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGES 486

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIM---------------------------------- 390
            +   +L  M + G+ P  LTY  +M                                  
Sbjct: 487 RKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNV 546

Query: 391 --LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
               + +K +LE+   L+ EM + G VP+   Y +V
Sbjct: 547 LLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 28/295 (9%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN +     Y +LI  L    K     ++ ++M     +P LIT   +  L+  F    
Sbjct: 328 KPNVIS----YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLIT---YNALINGFCKND 380

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
           M+K+A+++   +   G  P   ++  L+DA CK   + +   L +EM RE   P +  + 
Sbjct: 381 MLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYN 440

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+ G C+ G +  AK +  Q+   G  PD+V ++ L+ GY + G+   A  LLKEM + 
Sbjct: 441 CLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDR 366
           G  P   +Y ++++  C+   ++ A     +ME+      +V +Y  L+ G+ +  K++ 
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
              +L+ M+++G++PN++TY          E ++E      EM   G VPD+  +
Sbjct: 560 ANMLLNEMLEKGLVPNRITY----------EIVKE------EMVDQGFVPDIEGH 598



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 20/232 (8%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSK-------MRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
           A  QPN +     Y ALI    K       +  FG+V        K +  + TT ++ +L
Sbjct: 360 AGVQPNLI----TYNALINGFCKNDMLKEALDMFGSV--------KGQGAVPTTRMYNML 407

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           +  +     +     + +EM + G  PD   + CL+  LC+N +++ A KLFD++  +  
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL 467

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P L  F  L+ G+C++G+  +A  +L +M   G +P  + YN ++ GY + G +  A  +
Sbjct: 468 PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNM 527

Query: 301 LKEM-RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
             +M + +    N  SY VL+Q   +  K+E+AN    EM   G   + +TY
Sbjct: 528 RTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 177/398 (44%), Gaps = 14/398 (3%)

Query: 219 LCKNSSVKEAAKLFDEMRERFKPSLRH--FTSLLYGWCKEGK--LVEAKYVLVQMKDAGF 274
           L KNS +  + +L  ++      + R+    S L G+ + G    V + +  + M D   
Sbjct: 91  LVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCD-NV 149

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
             + ++ + L+  YA   +    FE  K     G   +A S   L+ AL +  +  +   
Sbjct: 150 CVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEY 209

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            + EM R   + +V T+  +I+  CK+ K+++  ++++ M   G  PN ++Y  ++  + 
Sbjct: 210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269

Query: 395 K---KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           K     ++ +   ++ EM +    P+++ +N++I    K   L  ++ V+ EM    + P
Sbjct: 270 KLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKP 329

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              S+  +++G    G + EA     +MV  G+   P   T  AL+N   +   ++ A D
Sbjct: 330 NVISYNSLINGLCNGGKISEAISMRDKMVSAGV--QPNLITYNALINGFCKNDMLKEALD 387

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           ++  +  +G       + + I +    G + +  +   +M    ++P   T+  L+ GL 
Sbjct: 388 MFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLC 447

Query: 572 KLYNRQIAAEITEKVRKMAAERQITFKM----YKRRGE 605
           +  N + A ++ +++        +TF +    Y R+GE
Sbjct: 448 RNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGE 485


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 9/464 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+K L++ ++ G  + +++EM K+   P +I   V+  L+  F  A  + KAIE+ D
Sbjct: 346 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI---VYNNLIDSFIEAGSLNKAIEIKD 402

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M   G       +  L+   CKN     A +L  EM    F  +   FTS++   C   
Sbjct: 403 LMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL 462

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A   + +M      P   +   L+SG  + GK + A EL  +   KG   +  +  
Sbjct: 463 MFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 522

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+  LC   K++EA R   E+   GC  D V+Y TLISG C  +K+D  +  LD M++R
Sbjct: 523 ALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR 582

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+  TY  ++       ++EE ++   + ++ G +PDV  Y+V+I   CK    +E 
Sbjct: 583 GLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEG 642

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              ++EM + ++ P T  +  ++  +   G L  A E  ++M  +G+  +P   T  +L+
Sbjct: 643 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGI--SPNSATYTSLI 700

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
             +    +VE AK ++  +  +G E NV+ +T  I      G + +      +M   +V 
Sbjct: 701 KGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH 760

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVR-KMAAERQITFKMY 600
           P   T+  ++ G  +  N   A+ +  ++R K      IT+K +
Sbjct: 761 PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 804



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 196/409 (47%), Gaps = 7/409 (1%)

Query: 162 EEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
           EE+R++   L+  EV+    +R         A++V   +   G  P +     LL +L +
Sbjct: 197 EEIRRKMSDLLI-EVYCTQFKRDGCYL----ALDVFPVLANKGMFPSKTTCNILLTSLVR 251

Query: 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            +  ++  + FD + +   P +  FT+ +  +CK GK+ EA  +  +M++AG  P++V +
Sbjct: 252 ANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTF 311

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N ++ G    G+  +AF   ++M  +G +P   +Y++L++ L R +++ +A     EM +
Sbjct: 312 NTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTK 371

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   +V+ Y  LI  F ++  +++  EI D M+ +G+     TY  ++  + K  + + 
Sbjct: 372 KGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADN 431

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L+ EM  IG   +  ++  VI L C       A+    EM   ++SPG      ++ 
Sbjct: 432 AERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 491

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           G    G   +A E + + + +G +   +  T  ALL+ L  A K++ A  +   I+ +GC
Sbjct: 492 GLCKHGKHSKALELWFQFLNKGFVVDTR--TSNALLHGLCEAGKLDEAFRIQKEILGRGC 549

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++  ++   I        + EA  +  +M+   + P   T++ L+ GL
Sbjct: 550 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 182/413 (44%), Gaps = 3/413 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           +F   +  F     V++A+++  +M + G  P+   F  ++D L       EA    ++M
Sbjct: 275 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 334

Query: 236 RER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            ER  +P+L  ++ L+ G  +  ++ +A +VL +M   GF P+++VYNNL+  + + G +
Sbjct: 335 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 394

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A E+   M  KG    +++Y  LI+  C+  + + A R   EM   G   +  ++T++
Sbjct: 395 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 454

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I   C     D     +  M+ R + P       ++    K  +  + +EL  +    G 
Sbjct: 455 ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF 514

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           V D    N ++   C+ G+L EA  +  E+          S+  ++ G  G+  L EA  
Sbjct: 515 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 574

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
           +  EMV RGL   P   T   L+  L    KVE A   W      G   +VY +++ I  
Sbjct: 575 FLDEMVKRGL--KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDG 632

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
                  +E   +  +MM  +V P    +  L+R   +     +A E+ E ++
Sbjct: 633 CCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMK 685



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 186/405 (45%), Gaps = 4/405 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LIK   K  +      L++EM       +    F  ++    S  M   A+  + EM
Sbjct: 416 YNTLIKGYCKNGQADNAERLLKEMLSIGFN-VNQGSFTSVICLLCSHLMFDSALRFVGEM 474

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPSLRHFTSLLYGWCKEGKL 259
                 P   +   L+  LCK+    +A +L F  + + F    R   +LL+G C+ GKL
Sbjct: 475 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 534

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  ++   G   D V YN L+SG     K+ +AF  L EM ++G  P+  +Y++L
Sbjct: 535 DEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 594

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  L  M K+EEA + + + +R+G   DV TY+ +I G CK+ + +   E  D M+ + +
Sbjct: 595 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 654

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN + Y H++ A+ +   L   +EL  +M+  G  P+ + Y  +I+    +  ++EA  
Sbjct: 655 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 714

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ EM    L P    +  ++ G+   G +++     +EM  + +   P   T   ++  
Sbjct: 715 LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV--HPNKITYTVMIGG 772

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             R   V  A  + + +  KG   +   +  +I+     G V EA
Sbjct: 773 YARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 817



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 141/269 (52%), Gaps = 1/269 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           + +A   LDEM K G +PD + +  L+  L   + V+EA + +D+  R    P +  ++ 
Sbjct: 569 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSV 628

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK  +  E +    +M     +P+ VVYN+L+  Y + G+++ A EL ++M+ KG
Sbjct: 629 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 688

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN+ +YT LI+ +  + ++EEA   F EM   G E +V  YT LI G+ K  ++ +  
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +L  M  + + PN++TY  ++  + +   + E   L+ EMR+ G VPD   Y   I   
Sbjct: 749 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 808

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFV 457
            K G + EA    +E   A++  G +  +
Sbjct: 809 LKQGGVLEAFKGSDEENYAAIIEGWNKLI 837



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           +PN  H    Y ALI    K+ +   V  L+ EM  +   P  IT   + +++  +A   
Sbjct: 725 EPNVFH----YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKIT---YTVMIGGYARDG 777

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            V +A  +L+EM + G  PD   +   +    K   V EA K  DE          ++ +
Sbjct: 778 NVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE---------ENYAA 828

Query: 249 LLYGWCK 255
           ++ GW K
Sbjct: 829 IIEGWNK 835


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 172/324 (53%), Gaps = 10/324 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ VH+Y     +I  L K+ +  A   L ++M +   +P ++T   +  ++      R
Sbjct: 7   QPD-VHTYT---TIINGLCKIGETVAAAGLFKKMGEAGCQPDVVT---YSTIIDSLCKDR 59

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247
            V +A+++   M   G  P+ F +  L+  LC  S  +EA+ + +EM      P++  F+
Sbjct: 60  RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 119

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+  +CKEG + EA+ VL  M + G EP++V Y++L++GY+   ++ +A +L   M  K
Sbjct: 120 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITK 179

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC P+  SY +LI   C+ +++ EA + F EM   G   D+V+Y TLI G C+  ++   
Sbjct: 180 GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 239

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           +++  +M+  G LP+  TY  ++    K+  L +   L   M+     P++  YN++I  
Sbjct: 240 HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 299

Query: 428 ACKLGELKEAVNVWNEMEAASLSP 451
            CK   LKEA  +++E+    L P
Sbjct: 300 MCKSRNLKEARKLFSELFVQGLQP 323



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 158/306 (51%), Gaps = 2/306 (0%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           ++P +  +T+++ G CK G+ V A  +  +M +AG +PD+V Y+ ++    +  ++ +A 
Sbjct: 6   YQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 65

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           ++   M+ KG  PN  +Y  LIQ LC   +  EA+    EM       ++VT++ LI+ F
Sbjct: 66  DIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIF 125

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK   +     +L +M + G+ PN +TY  +M  +  + E+ E  +L   M   GC PDV
Sbjct: 126 CKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDV 185

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
            +YN++I   CK   + EA  ++NEM    L+P   S+  ++ G    G L EA + FK 
Sbjct: 186 FSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKN 245

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  G L  P   T   LL+   +   +  A  ++  + +   + N+  + I I ++  +
Sbjct: 246 MLTNGNL--PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKS 303

Query: 539 GHVKEA 544
            ++KEA
Sbjct: 304 RNLKEA 309



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 168/329 (51%), Gaps = 3/329 (0%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEA 262
           G +PD   +  +++ LCK      AA LF +M E   +P +  +++++   CK+ ++ EA
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +   MK  G  P+I  YN+L+ G     +  +A  +L EM      PN  ++++LI  
Sbjct: 65  LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 124

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            C+   + EA      M   G E +VVTY++L++G+    ++    ++ D MI +G  P+
Sbjct: 125 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPD 184

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
             +Y  ++  + K + + E  +L  EM   G  PD+ +YN +I   C+LG L+EA +++ 
Sbjct: 185 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 244

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M      P   ++ +++ GF  QG L +A   F+ M    L   P       L++++ +
Sbjct: 245 NMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL--KPNMVMYNILIDAMCK 302

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           ++ ++ A+ ++S +  +G + N+  W ++
Sbjct: 303 SRNLKEARKLFSELFVQGLQPNMKHWKLF 331



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 154/293 (52%), Gaps = 1/293 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A  +  +M + GC+PD   +  ++D+LCK+  V EA  +F  M+ +   P++  + SL+ 
Sbjct: 29  AAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ 88

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C   +  EA  +L +M      P+IV ++ L++ + + G + +A  +LK M   G +P
Sbjct: 89  GLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEP 148

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  +Y+ L+       ++ EA + F  M   GC+ DV +Y  LI+G+CK+++I    ++ 
Sbjct: 149 NVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLF 208

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + MI +G+ P+ ++Y  ++    +   L E  +L   M   G +PD+  Y++++   CK 
Sbjct: 209 NEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQ 268

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           G L +A  ++  M++  L P    + +++        L EA + F E+  +GL
Sbjct: 269 GYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGL 321



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 136/269 (50%), Gaps = 2/269 (0%)

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M  +G  P+ ++YT +I  LC++ +   A   F +M  +GC+ DVVTY+T+I   CK R+
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           ++   +I   M  +GI PN  TY  ++          E   ++ EM  +  +P++  +++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I + CK G + EA  V   M    + P   ++  +++G+  Q  + EA + F  M+ +G
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P   +   L+N   +A+++  AK +++ ++ +G   ++ ++   I  L   G ++E
Sbjct: 181 --CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 238

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           A     +M+    +P   T++ L+ G  K
Sbjct: 239 AHDLFKNMLTNGNLPDLCTYSILLDGFCK 267



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 2/153 (1%)

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M A    P   ++  +++G    G  + A   FK+M   G    P   T   +++SL + 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAG--CQPDVVTYSTIIDSLCKD 58

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           ++V  A D++S +  KG   N++ +   I  L +    +EA +   +MM  ++MP   TF
Sbjct: 59  RRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 118

Query: 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
           + L+    K  N   A  + + + +M  E  + 
Sbjct: 119 SLLINIFCKEGNVFEARGVLKTMTEMGVEPNVV 151


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 196/436 (44%), Gaps = 45/436 (10%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           N+ H+Y+ Y A+I+ LSK R F  +  L+ ++ K + +     +F+ ++R +  A   K 
Sbjct: 130 NFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKC-GENLFITVIRNYGFAGRPKL 188

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLL 250
           AI     +P +G +P    F  LL+ L +N        +F   R++F   P++     L+
Sbjct: 189 AIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILV 248

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
              CK+  +  A  VL +M   GF P++V Y  +L GY   G M  A  +  E+  +G  
Sbjct: 249 KALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWV 308

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +YT+L+   C+  +  +A +   EME +  E + VTY  +I  +CK +K      +
Sbjct: 309 PDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNL 368

Query: 371 LDSMIQRGILPNQLTYLHI--MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           LD M+++  +P+      +  ML  E K  +E   EL  ++ K  C PD +  + +I   
Sbjct: 369 LDDMLEKKYIPSSALCCRVIDMLCEEGK--VEVACELWKKLLKKNCTPDNAITSTLIHWL 426

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G++ EA  +++E E  S+ P T ++  ++ G    G L EA                
Sbjct: 427 CKEGKVWEARKLFDEFEKGSI-PSTLTYNALIAGMCEGGELPEAAR-------------- 471

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                                  +W  +V KGC  N + + + I      G+ +E     
Sbjct: 472 -----------------------LWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVM 508

Query: 549 LDMMDADVMPQPDTFA 564
            +M+D   +P   T+A
Sbjct: 509 EEMLDNGCLPNKATYA 524


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 205/417 (49%), Gaps = 17/417 (4%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP L+T   F  ++     A  ++ A +V DEM + G  PD   +  L+   CK     E
Sbjct: 217 KPNLVT---FNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHE 273

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +F EM ++   P +  FTSL++  CK G L  A  ++ QM++ G + + V +  L+ 
Sbjct: 274 ALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALID 333

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G+ + G + DA   ++ MR+    P+   Y  LI   C + +M+EA     EME  G + 
Sbjct: 334 GFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 393

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DVVTY+T+IS +CK+      +E+   M+++G+LP+ +TY  ++    +++ L +   L 
Sbjct: 394 DVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLF 453

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M K+G  PD   Y  +I   CK G ++ A+++ ++M  A + P   ++ V+++G    
Sbjct: 454 KNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKS 513

Query: 467 GCLIEACE-YFKEMVGRGLLSAPQYGTL-----KALLNSLLRAQK-------VEMAKDVW 513
              +EA +  FK      + +  +Y  L     KA L S+L   K       +  A  V+
Sbjct: 514 ARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVY 573

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             ++ +   L+   +++ IH     G+V +A S+   M+     P   +   L+RGL
Sbjct: 574 QSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGL 630



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 202/405 (49%), Gaps = 16/405 (3%)

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCK 255
            D M   G  P+ + +  L+ ALC     KEA  +  +MR     P++  + +L+  + +
Sbjct: 138 FDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFR 197

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
            G++  A+ ++  M D G +P++V +N++++G  + GKM DA ++  EM R+G  P+  S
Sbjct: 198 AGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVS 257

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  L+   C+     EA   F EM + G   DVVT+T+LI   CK+  ++    ++  M 
Sbjct: 258 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMR 317

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           +RG+  N++T+  ++    KK  L++ +  +  MR+    P V  YN +I   C +G + 
Sbjct: 318 ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMD 377

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA  + +EMEA  L P   ++  ++  +        A E  ++M+ +G+L  P   T  +
Sbjct: 378 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVL--PDAITYSS 435

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
           L+  L   +++  A  ++  ++  G + + + +T  I      G+V+ A S    M+ A 
Sbjct: 436 LIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAG 495

Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
           V+P   T++ L+ GL K              R M A+ Q+ FK+Y
Sbjct: 496 VLPDVVTYSVLINGLSK------------SARAMEAQ-QLLFKLY 527



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 146/331 (44%), Gaps = 34/331 (10%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G+ P ++ YN +L   +    +T A      M   G  PN  +Y +LI+ALC     +EA
Sbjct: 111 GYVPSVLAYNAVLLALSD-ASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                +M  +GC  +VVTY TL++ F ++ ++D    ++  M+  G+ PN +T+  ++  
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             K  ++E+  ++  EM + G  PD  +YN ++   CK G   EA++V+ EM    + P 
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL------LSA------------------- 487
             +F  ++H     G L  A    ++M  RGL       +A                   
Sbjct: 290 VVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 349

Query: 488 --------PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
                   P      AL+N      +++ A+++   +  KG + +V  ++  I +   N 
Sbjct: 350 GMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNC 409

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
               A      M++  V+P   T++ L+R L
Sbjct: 410 DTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 139/329 (42%), Gaps = 21/329 (6%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI     + +      L+ EM  +  KP ++T   +  ++  +        A E+  
Sbjct: 363 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT---YSTIISAYCKNCDTHSAFELNQ 419

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M + G  PD   +  L+  LC+   + +A  LF  M +   +P    +TSL+ G CKEG
Sbjct: 420 QMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 479

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +  +M  AG  PD+V Y+ L++G ++  +  +A +LL ++  +   P    Y 
Sbjct: 480 NVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYD 539

Query: 318 VL---------------IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
            L               ++  C    M EA++ +  M       D   Y+ LI G C++ 
Sbjct: 540 ALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAG 599

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            + +       M+QRG  PN  + + ++    +   + E  +++ ++     + D     
Sbjct: 600 NVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASK 659

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +I L    G +   ++V + M    L P
Sbjct: 660 ALIDLNLNEGNVDAVLDVLHGMAKDGLLP 688



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 21/260 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +LI+ L + ++      L + M K   +P   T   +  L+        V++A+ + D
Sbjct: 433 YSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFT---YTSLIDGHCKEGNVERALSLHD 489

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPS--------------- 242
           +M K G  PD   +  L++ L K++   EA +L F    E   P+               
Sbjct: 490 KMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAE 549

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L+   +LL G+C +G + EA  V   M D  +  D  VY+ L+ G+ + G +  A    K
Sbjct: 550 LKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHK 609

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M ++G  PN+ S   LI+ L     + EA++   ++      AD      LI       
Sbjct: 610 QMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEG 669

Query: 363 KIDRCYEILDSMIQRGILPN 382
            +D   ++L  M + G+LP+
Sbjct: 670 NVDAVLDVLHGMAKDGLLPS 689


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 204/447 (45%), Gaps = 42/447 (9%)

Query: 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           V+ +ME+    KP ++T   +  ++  +     V +A+E+L EM + GC P++  +  L+
Sbjct: 202 VYGMMEQF-GIKPTVVT---YNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLV 257

Query: 217 DALCKNSSVKEAAKLFDEM------------------------------------RERFK 240
           + L K   +++A  L +EM                                      R  
Sbjct: 258 NGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAF 317

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P+L  + +L+YG CK  ++   +     M  + F PDIV +N+LL GY + G +++AF L
Sbjct: 318 PTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLL 377

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             E++ +   P   +Y  LI  LC    ++ A R   EM   G   D+ TYT L++G  K
Sbjct: 378 FDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFK 437

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              +       + M+ +G+ P++  Y   ++   K  +      +  EM   G  PDV  
Sbjct: 438 LGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVIT 497

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YNV +   C+ G  +EA ++   M +  L P   ++  +++GF+  G L +A E F EM+
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
            +G+  AP   T   L+++    Q +++A   +S ++ K    NV  +   I+ L     
Sbjct: 558 SKGV--APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRR 615

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLM 567
           + EA  Y  +M +  ++P   ++  L+
Sbjct: 616 MDEAYKYFDEMEEKGILPNKFSYTILI 642



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 202/436 (46%), Gaps = 6/436 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+  LSK  +      L+EEM       ++   +  L+  F    +  +A ++++EM
Sbjct: 253 YNVLVNGLSKKGELEQAKGLIEEMLNSGLN-VSAYTYNPLINGFCQKGLFVEAFDLVEEM 311

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
                 P    +  L+  LCK   V      F +M + +F P +  F SLLYG+C+ G +
Sbjct: 312 VNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCI 371

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  ++K     P ++ YN L+ G    G +  A  L KEM  +G  P+  +YT+L
Sbjct: 372 SEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTIL 431

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +    ++  +  A   F EM   G + D   Y T I G  K       + + + M+  G 
Sbjct: 432 VNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGF 491

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY   + A  ++   EE  +L+  M   G +PD   Y  +I    K G L++A  
Sbjct: 492 PPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE 551

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLN 498
           V+NEM +  ++P   ++ V++H    +  L  A  YF +M+ +   S P    T  A++N
Sbjct: 552 VFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEK---SVPANVITYNAIIN 608

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L   ++++ A   +  +  KG   N +++TI I+   + G+ +EA     +M+D  + P
Sbjct: 609 GLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQP 668

Query: 559 QPDTFAKLMRGLKKLY 574
              T +  ++ L + Y
Sbjct: 669 DSFTHSVFLKNLHRDY 684



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 232/514 (45%), Gaps = 30/514 (5%)

Query: 96  QHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFG 155
           Q   V+  P L  RV++       +  R++ W   QP++  S  V+ A++  L       
Sbjct: 77  QFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMH 136

Query: 156 AVWALME-----EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
           A + +ME     EM      LI   V  +L               V D+M + G  PD  
Sbjct: 137 AAYWVMERVVSFEMHGVVDVLIAGHVXCLL---------------VFDKMIRNGLLPD-- 179

Query: 211 VFGC--LLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           V  C  +L  L ++ ++   AK    M E+F  KP++  + ++L  +CKEG++ +A  +L
Sbjct: 180 VKNCNRILRVL-RDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELL 238

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M++ G  P+ V YN L++G ++ G++  A  L++EM   G + +A +Y  LI   C+ 
Sbjct: 239 SEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQK 298

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               EA     EM        + TY TL+ G CK  ++         M++    P+ +++
Sbjct: 299 GLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSF 358

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++  + +   + E   L  E++    VP V  YN +I   C  G L  A+ +  EM  
Sbjct: 359 NSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTD 418

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             L P   ++ ++V+G    G +  A  +F EM+ +GL   P        +   ++    
Sbjct: 419 QGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL--KPDRFAYNTRIVGEMKIADT 476

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
            +A  +   ++  G   +V  + +++H+L   G+ +EAC    +M+   ++P   T+  +
Sbjct: 477 SVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536

Query: 567 MRGLKKLYNRQIAAEI-TEKVRKMAAERQITFKM 599
           + G  K  + + A E+  E + K  A   +T+ +
Sbjct: 537 INGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTV 570



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 183/423 (43%), Gaps = 43/423 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    +   F   + L+EEM  R+  P L T    +  + ++     V+       
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLR---FS 344

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K    PD   F  LL   C+   + EA  LFDE++ R   P++  + +L++G C  G
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG------------------------- 292
            L  A  +  +M D G  PDI  Y  L++G  ++G                         
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464

Query: 293 -------KMTD---AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
                  K+ D   AF + +EM   G  P+  +Y V + ALC+    EEA      M   
Sbjct: 465 TRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD 524

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D VTYT++I+GF K+  + +  E+ + M+ +G+ P+ +TY  ++ AH  K+ L+  
Sbjct: 525 GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLA 584

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
                +M +     +V  YN +I   C    + EA   ++EME   + P   S+ ++++ 
Sbjct: 585 FMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINE 644

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G   EA   ++EM+ R +   P   T    L +L R  +V   + V S I      
Sbjct: 645 SCNMGYWEEALRLYREMLDRKI--QPDSFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702

Query: 523 LNV 525
           +NV
Sbjct: 703 INV 705


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 211/434 (48%), Gaps = 10/434 (2%)

Query: 141 YRALIKSLSKMRKFGAV--WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+ +L +  K+     + L  E     P L   + + IL++     +   KA E+L+
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNL---QTYNILIKISCRKKQFDKAKELLN 173

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G  PD F +G L+++L KN  + +A KLFDEM ER   P +  +  L+ G+ K+G
Sbjct: 174 WMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG 233

Query: 258 KLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ A  +  ++ K     P+I  YN +++G  + GK  ++FE+   M++     +  +Y
Sbjct: 234 DILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTY 293

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI  LC    ++ A R + EM  +G   DVV Y T+++G+ ++ +I+ C E+   M +
Sbjct: 294 STLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEK 353

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G     ++Y  ++    +  +++E + +   + +  C  D   Y V++   CK G L +
Sbjct: 354 EGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 412

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+++  E E       T ++  M++G   +G L E      +M   G    P      A+
Sbjct: 413 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPH--VCNAV 470

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +N  +RA K+E A   +  +V+KGC   V  +   I+ L       EA +   +M+    
Sbjct: 471 INGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW 530

Query: 557 MPQPDTFAKLMRGL 570
            P   T++ LM GL
Sbjct: 531 KPNMITYSLLMNGL 544



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 227/496 (45%), Gaps = 47/496 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVL 197
            Y  LIK   + ++F     L+  M +   Q  + +VF    L+   A    +  A+++ 
Sbjct: 151 TYNILIKISCRKKQFDKAKELLNWMWE---QGFSPDVFSYGTLINSLAKNGYMSDALKLF 207

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-------------------------- 231
           DEMP+ G  PD   +  L+D   K   +  A+++                          
Sbjct: 208 DEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 267

Query: 232 ---FDEMRE---RFKPS-----LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
              FDE  E   R K +     L  +++L++G C  G L  A  V  +M + G  PD+VV
Sbjct: 268 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 327

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN +L+GY + G++ +  EL K M ++GC     SY +LI+ L    K++EA   +  + 
Sbjct: 328 YNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLP 386

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEEL 399
              C AD +TY  L+ G CK+  +++   IL+     RG L +   Y  ++    ++  L
Sbjct: 387 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL-DTFAYSSMINGLCREGRL 445

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           +E   ++ +M K GC P+    N VI    +  +L++A+  +  M +    P   ++  +
Sbjct: 446 DEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL 505

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           ++G        EA    KEM+ +G    P   T   L+N L + +K++MA ++W   + K
Sbjct: 506 INGLSKAERFSEAYALVKEMLHKGW--KPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
           G + +V    I IH L S+G V++A     +M     +P   T   LM G  K+ + + A
Sbjct: 564 GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERA 623

Query: 580 AEITEKVRKMAAERQI 595
           ++I + + +   +  I
Sbjct: 624 SKIWDHILQYGPQPDI 639



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 210/502 (41%), Gaps = 79/502 (15%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T  VF  +++R    ++V     +++ +    C+  E V   ++ A  KNS   +A  +F
Sbjct: 42  TPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIF 101

Query: 233 DEMRERF--KPSLRHFTSLLYG------W-----------------------------CK 255
             M E F  +P +R + SLL        W                             C+
Sbjct: 102 QRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCR 161

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD----- 310
           + +  +AK +L  M + GF PD+  Y  L++  A+ G M+DA +L  EM  +G       
Sbjct: 162 KKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 311 -------------------------------PNANSYTVLIQALCRMEKMEEANRAFVEM 339
                                          PN  SY V+I  LC+  K +E+   +  M
Sbjct: 222 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 281

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +++    D+ TY+TLI G C S  +D    +   M + G+ P+ + Y  ++  + +   +
Sbjct: 282 KKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRI 341

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           EEC+EL   M K GC   VS YN++IR   +  ++ EA+++W  +        + ++ V+
Sbjct: 342 EECLELWKVMEKEGCRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVL 400

Query: 460 VHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           VHG    G L +A    +E   GRG L    Y +   ++N L R  +++    V   +  
Sbjct: 401 VHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS---MINGLCREGRLDEVAGVLDQMTK 457

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
            GC+ N +     I+       +++A  +  +M+     P   T+  L+ GL K      
Sbjct: 458 HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSE 517

Query: 579 A-AEITEKVRKMAAERQITFKM 599
           A A + E + K      IT+ +
Sbjct: 518 AYALVKEMLHKGWKPNMITYSL 539



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/478 (22%), Positives = 206/478 (43%), Gaps = 77/478 (16%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASAR 188
           K P+   +   Y  +I  L K  KF   + +   M+K E+ Q + T  +  L+     + 
Sbjct: 247 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT--YSTLIHGLCGSG 304

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVF--------------------------GC-------- 214
            +  A  V  EM + G  PD  V+                          GC        
Sbjct: 305 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNI 364

Query: 215 LLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           L+  L +N+ V EA  +++ + E+     S+  +  L++G CK G L +A  +L + ++ 
Sbjct: 365 LIRGLFENAKVDEAISIWELLPEKDCCADSMT-YGVLVHGLCKNGYLNKALSILEEAENG 423

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
             + D   Y+++++G  + G++ +   +L +M + GC PN +    +I    R  K+E+A
Sbjct: 424 RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDA 483

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            R F  M   GC   VVTY TLI+G  K+ +    Y ++  M+ +G  PN +TY  +M  
Sbjct: 484 LRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNG 543

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             + ++L+  + L  +  + G  PDV  +N++I   C  G++++A+ +++EM+     P 
Sbjct: 544 LCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPN 603

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             +   ++ GF                                      + +  E A  +
Sbjct: 604 LVTHNTLMEGF-------------------------------------YKVRDFERASKI 626

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           W  I+  G + ++ ++ I +  L S   + +A  +  D +D  V+P   T+  L+R +
Sbjct: 627 WDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAV 684



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 163/333 (48%), Gaps = 8/333 (2%)

Query: 141 YRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  LI+ L   +K+ +  ++W    E+  EK     +  + +L+        + KA+ +L
Sbjct: 362 YNILIRGLFENAKVDEAISIW----ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 417

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           +E      + D F +  +++ LC+   + E A + D+M +   KP+     +++ G+ + 
Sbjct: 418 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRA 477

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            KL +A      M   G  P +V YN L++G ++  + ++A+ L+KEM  KG  PN  +Y
Sbjct: 478 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITY 537

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           ++L+  LC+ +K++ A   + +    G + DV  +  +I G C S K++   ++   M Q
Sbjct: 538 SLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQ 597

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           R  +PN +T+  +M    K  + E   ++   + + G  PD+ +YN+ ++  C    + +
Sbjct: 598 RKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISD 657

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           AV   N+     + P   ++ ++V   L  G L
Sbjct: 658 AVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 137/298 (45%), Gaps = 2/298 (0%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G+     V++++L        +     +++ +R + C    +    +I+A  +    ++A
Sbjct: 38  GYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQA 97

Query: 333 NRAFVEM-ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
              F  M E  GC+  + +Y +L++   +S K D            G+ PN  TY  ++ 
Sbjct: 98  LDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIK 157

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              +K++ ++  EL+  M + G  PDV +Y  +I    K G + +A+ +++EM    ++P
Sbjct: 158 ISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTP 217

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
               + +++ GF  +G ++ A E ++ ++ +G    P   +   ++N L +  K + + +
Sbjct: 218 DVACYNILIDGFFKKGDILNASEIWERLL-KGPSVYPNIPSYNVMINGLCKCGKFDESFE 276

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +W  +       ++Y ++  IH L  +G++  A     +M +  V P    +  ++ G
Sbjct: 277 IWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNG 334



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 41/194 (21%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  LI  LSK  +F   +AL++EM  +  KP +IT   + +LM      + +  A+ + 
Sbjct: 501 TYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMIT---YSLLMNGLCQGKKLDMALNLW 557

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER------------------- 238
            +  + G +PD  +   ++  LC +  V++A +L+ EM++R                   
Sbjct: 558 CQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKV 617

Query: 239 -----------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
                             +P +  +   L G C   ++ +A   L    D G  P  + +
Sbjct: 618 RDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITW 677

Query: 282 NNLLSGYAQMGKMT 295
           N L+      G +T
Sbjct: 678 NILVRAVLDNGALT 691


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 211/434 (48%), Gaps = 10/434 (2%)

Query: 141 YRALIKSLSKMRKFGAV--WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+ +L +  K+     + L  E     P L T   + IL++     +   KA E+L+
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQT---YNILIKISCRKKQFDKAKELLN 173

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M + G  PD F +G L+++L KN  + +A KLFDEM ER   P +  +  L+ G+ K+G
Sbjct: 174 WMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG 233

Query: 258 KLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ A  +  ++ K     P+I  YN +++G  + GK  ++FE+   M++     +  +Y
Sbjct: 234 DILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTY 293

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI  LC    ++ A R + EM  +G   DVV Y T+++G+ ++ +I+ C E+   M +
Sbjct: 294 STLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEK 353

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G     ++Y  ++    +  +++E + +   + +  C  D   Y V++   CK G L +
Sbjct: 354 EGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 412

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+++  E E       T ++  M++G   +G L E      +M   G    P      A+
Sbjct: 413 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPH--VCNAV 470

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +N  +RA K+E A   +  +V+KGC   V  +   I+ L       EA +   +M+    
Sbjct: 471 INGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW 530

Query: 557 MPQPDTFAKLMRGL 570
            P   T++ LM GL
Sbjct: 531 KPNMITYSLLMNGL 544



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 224/487 (45%), Gaps = 47/487 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVL 197
            Y  LIK   + ++F     L+  M +   Q  + +VF    L+   A    +  A+++ 
Sbjct: 151 TYNILIKISCRKKQFDKAKELLNWMWE---QGFSPDVFSYGTLINSLAKNGYMSDALKLF 207

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-------------------------- 231
           DEMP+ G  PD   +  L+D   K   +  A+++                          
Sbjct: 208 DEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 267

Query: 232 ---FDEMRE---RFKPS-----LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
              FDE  E   R K +     L  +++L++G C  G L  A  V  +M + G  PD+VV
Sbjct: 268 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 327

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN +L+GY + G++ +  EL K M ++GC     SY +LI+ L    K++EA   +  + 
Sbjct: 328 YNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLP 386

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEEL 399
              C AD +TY  L+ G CK+  +++   IL+     RG L +   Y  ++    ++  L
Sbjct: 387 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL-DTFAYSSMINGLCREGRL 445

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           +E   ++ +M K GC P+    N VI    +  +L++A+  +  M +    P   ++  +
Sbjct: 446 DEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL 505

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           ++G        EA    KEM+ +G    P   T   L+N L + +K++MA ++W   + K
Sbjct: 506 INGLSKAERFSEAYALVKEMLHKGW--KPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
           G + +V    I IH L S+G V++A     +M     +P   T   LM G  K+ + + A
Sbjct: 564 GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERA 623

Query: 580 AEITEKV 586
           ++I + +
Sbjct: 624 SKIWDHI 630



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 210/502 (41%), Gaps = 79/502 (15%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T  VF  +++R    ++V     +++ +    C+  E V   ++ A  KNS   +A  +F
Sbjct: 42  TPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIF 101

Query: 233 DEMRERF--KPSLRHFTSLLYG------W-----------------------------CK 255
             M E F  +P +R + SLL        W                             C+
Sbjct: 102 QRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCR 161

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD----- 310
           + +  +AK +L  M + GF PD+  Y  L++  A+ G M+DA +L  EM  +G       
Sbjct: 162 KKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 311 -------------------------------PNANSYTVLIQALCRMEKMEEANRAFVEM 339
                                          PN  SY V+I  LC+  K +E+   +  M
Sbjct: 222 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRM 281

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +++    D+ TY+TLI G C S  +D    +   M + G+ P+ + Y  ++  + +   +
Sbjct: 282 KKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRI 341

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           EEC+EL   M K GC   VS YN++IR   +  ++ EA+++W  +        + ++ V+
Sbjct: 342 EECLELWKVMEKEGCRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVL 400

Query: 460 VHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           VHG    G L +A    +E   GRG L    Y +   ++N L R  +++    V   +  
Sbjct: 401 VHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS---MINGLCREGRLDEVAGVLDQMTK 457

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
            GC+ N +     I+       +++A  +  +M+     P   T+  L+ GL K      
Sbjct: 458 HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSE 517

Query: 579 A-AEITEKVRKMAAERQITFKM 599
           A A + E + K      IT+ +
Sbjct: 518 AYALVKEMLHKGWKPNMITYSL 539



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 174/398 (43%), Gaps = 5/398 (1%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASAR 188
           K P+   +   Y  +I  L K  KF   + +   M+K E+ Q + T  +  L+     + 
Sbjct: 247 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT--YSTLIHGLCGSG 304

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
            +  A  V  EM + G  PD  V+  +L+   +   ++E  +L+  M +    ++  +  
Sbjct: 305 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNI 364

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G  +  K+ EA  +   + +     D + Y  L+ G  + G +  A  +L+E     
Sbjct: 365 LIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 424

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            D +  +Y+ +I  LCR  +++E      +M + GC+ +      +I+GF ++ K++   
Sbjct: 425 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDAL 484

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
               +M+ +G  P  +TY  ++    K E   E   L+ EM   G  P++  Y++++   
Sbjct: 485 RFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGL 544

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           C+  +L  A+N+W +       P      +++HG    G + +A + + EM  R  +  P
Sbjct: 545 CQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCV--P 602

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
              T   L+    + +  E A  +W  I+      N Y
Sbjct: 603 NLVTHNTLMEGFYKVRDFERASKIWDHILQSWSSSNCY 640



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 137/298 (45%), Gaps = 2/298 (0%)

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G+     V++++L        +     +++ +R + C    +    +I+A  +    ++A
Sbjct: 38  GYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQA 97

Query: 333 NRAFVEM-ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
              F  M E  GC+  + +Y +L++   +S K D            G+ PN  TY  ++ 
Sbjct: 98  LDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIK 157

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
              +K++ ++  EL+  M + G  PDV +Y  +I    K G + +A+ +++EM    ++P
Sbjct: 158 ISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTP 217

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
               + +++ GF  +G ++ A E ++ ++ +G    P   +   ++N L +  K + + +
Sbjct: 218 DVACYNILIDGFFKKGDILNASEIWERLL-KGPSVYPNIPSYNVMINGLCKCGKFDESFE 276

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +W  +       ++Y ++  IH L  +G++  A     +M +  V P    +  ++ G
Sbjct: 277 IWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNG 334


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 197/403 (48%), Gaps = 3/403 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF +LM  +  +     AI+    + K+  +      G L D L K +    A   ++E+
Sbjct: 157 VFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEI 216

Query: 236 RE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            +  + P +  F  L++  CKE K+ EA+ +  ++   G  P +V +N L++GY + G +
Sbjct: 217 LDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNL 276

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
              F L + M      P+  +Y+VLI  LC+  ++++AN+ F+EM   G   + VT+TTL
Sbjct: 277 DQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTL 336

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I+G C + + D   EI   M+++G+ P+ +TY  ++    K  +L E  +L+ EM + G 
Sbjct: 337 INGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGL 396

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            PD   Y ++I   CK G+L+ A+ +  EM    +     +F  ++ GF  +G +IEA  
Sbjct: 397 KPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAER 456

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM+  G+   P   T   +++   +   V+    +   +   G    V  + + ++ 
Sbjct: 457 TLREMLEAGI--KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNG 514

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
           L   G +K A      M++  V+P   T+  L+ G  K  NR+
Sbjct: 515 LCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNRE 557



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 163/341 (47%), Gaps = 21/341 (6%)

Query: 102 LRPGLT--ERVINRCGDAGNL--GYRY--YMWASKQPNYVHSYDVYRALIKSLSKMRKFG 155
           LRP +     +IN    +GNL  G+R   +M  ++    V +Y V   LI  L K  +  
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV---LINGLCKEGQLD 312

Query: 156 AVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFG 213
               L  EM  R   P  +T   F  L+            +E+  +M + G +PD   + 
Sbjct: 313 DANKLFLEMCDRGLVPNDVT---FTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYN 369

Query: 214 CLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
            L++ LCK   ++EA KL  EM +R  KP    +T L+ G CKEG L  A  +  +M   
Sbjct: 370 TLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKE 429

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           G E D V +  L+SG+ + G++ +A   L+EM   G  P+  +YT++I   C+   ++  
Sbjct: 430 GIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTG 489

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            +   EM+  G    VVTY  L++G CK  ++     +LD+M+  G++P+ +TY  ++  
Sbjct: 490 FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEG 549

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVI---RLACK 430
           H K    E+  +L  E    G V D  +Y  +I   R  CK
Sbjct: 550 HCKHGNREDFDKLQSEK---GLVQDYGSYTSLIGDLRKTCK 587



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 155/389 (39%), Gaps = 54/389 (13%)

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVL-----------------VQMKDAGFEPDI 278
           +  F+ S+  + ++ +  C    L EA+ +L                   ++  G     
Sbjct: 96  QHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSN 155

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           +V++ L++ Y   G  +DA +  + +R+       +S   L   L ++     A   + E
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           +   G   DV  +  L+   CK  KI+    +   + +RG+ P  +++  ++  + K   
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           L++   L   M +    PDV  Y+V+I   CK G+L +A  ++ EM    L P   +F  
Sbjct: 276 LDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTT 335

Query: 459 MVHGF-------LGQ----------------------------GCLIEACEYFKEMVGRG 483
           +++G        LG                             G L EA +   EM  RG
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
           L   P   T   L++   +   +E A ++   +V +G EL+  A+T  I      G V E
Sbjct: 396 L--KPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIE 453

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           A     +M++A + P   T+  ++ G  K
Sbjct: 454 AERTLREMLEAGIKPDDATYTMVIHGFCK 482


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/474 (24%), Positives = 219/474 (46%), Gaps = 19/474 (4%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182
           +++ W SK+P Y H+ + + +++  L + R    V+A  + +R            +++++
Sbjct: 93  QFFYWISKRPFYKHNMNCFISMLNRLVRDR----VFAPADHIR------------ILMIK 136

Query: 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKP 241
              +   +++  + L+E+   G     +    LL  L K   V+ A  L+ +M     +P
Sbjct: 137 ACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQP 196

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           SL  F +L+    K+GK+ EA+ +L Q+      PD+  Y +L+ G+ +   +  AF + 
Sbjct: 197 SLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF 256

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
             M ++GCDPN+ +Y+ LI  LC   +++EA     EM   G E  V TYT  I+  C  
Sbjct: 257 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 316

Query: 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421
              +   E++  M +RG  PN  TY  ++    +  +LE  + L  +M K G VP+   Y
Sbjct: 317 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 376

Query: 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
           N +I   C  G    A+ +++ ME       T ++  ++ G    G + +A   F++M+ 
Sbjct: 377 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 436

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
            G L  P   T   L+N  L    V  A  +   +   GCE + + +   +      G +
Sbjct: 437 MGPL--PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 542 KEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
           + A  Y  +M++  + P P ++  L+ G  K     IA  + +++ +M     +
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNV 548



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 202/422 (47%), Gaps = 6/422 (1%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L+T   F  L+   +    V++A  +L ++ +Y   PD F +  L+   C+N ++  
Sbjct: 195 QPSLLT---FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDL 251

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +FD M +E   P+   +++L+ G C EG++ EA  +L +M + G EP +  Y   ++
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 311

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
               +    +A EL+  M+++GC PN  +YT LI  L R+ K+E A   + +M + G   
Sbjct: 312 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 371

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           + VTY  LI+  C   +     +I   M   G L N  TY  I+       ++E+ + L 
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 431

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M K+G +P V  YN +I      G +  A  + + M+     P   ++  +V GF   
Sbjct: 432 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A  YF+EMV  GL   P   +  AL++   +  KV++A  +   +   GC  NV 
Sbjct: 492 GKLESASFYFQEMVECGL--NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVE 549

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           ++   I+ L       EA   C  M++  ++P   T+  L+ GL +    Q A +I   +
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 587 RK 588
            K
Sbjct: 610 EK 611



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 223/498 (44%), Gaps = 54/498 (10%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINR--------CGDAGNLGYRYYMWASKQPNYVHS 137
           SRL KLE+A+     +L+ GL    +           G   +   + + W     +  ++
Sbjct: 349 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANT 408

Query: 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
              Y  +IK L           L E+M K  P L T   +  L+  + +   V  A  +L
Sbjct: 409 -QTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP-LPTVVTYNTLINGYLTKGNVNNAARLL 466

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
           D M + GCEPDE+ +  L+    K   ++ A+  F EM E    P+   +T+L+ G  K+
Sbjct: 467 DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKD 526

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK+  A  +L +M++ G  P++  YN +++G ++  + ++A ++  +M  +G  PN  +Y
Sbjct: 527 GKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITY 586

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI  LCR  + + A + F +ME+  C  ++ TY++LI G C+  K D      + M +
Sbjct: 587 TTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSE 642

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G  P   TY  ++    +K    E  +L+ +M++ G  PD   Y  ++   CK  E+  
Sbjct: 643 IGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDH 702

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+ +++ +EA               GF                              +AL
Sbjct: 703 ALKIFHSIEAK--------------GF-----------------------QLHLSIYRAL 725

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA-D 555
           + +L +A +VE A+ ++  ++ K    +   WT+ +  L   G + + C   L +M++ +
Sbjct: 726 ICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGEL-DLCMKLLHIMESKN 784

Query: 556 VMPQPDTFAKLMRGLKKL 573
             P   T+  L R L ++
Sbjct: 785 FTPNIQTYVILGRELSRI 802



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 206/474 (43%), Gaps = 49/474 (10%)

Query: 134 YVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           Y  S DV  Y +LI    + R     + + + M KE   P  +T   +  L+    +   
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT---YSTLINGLCNEGR 283

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V +A+++L+EM + G EP  + +   + ALC     +EA +L   M++R  +P+++ +T+
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G  + GKL  A  +  +M   G  P+ V YN L++     G+ + A ++   M   G
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 309 CDPNANSYTVLIQALC-------------RMEKM----------------------EEAN 333
              N  +Y  +I+ LC             +M KM                        A 
Sbjct: 404 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 463

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           R    M+ +GCE D  TY  L+SGF K  K++        M++ G+ PN ++Y  ++  H
Sbjct: 464 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGH 523

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K  +++  + L+  M ++GC P+V +YN VI    K     EA  + ++M    L P  
Sbjct: 524 SKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNV 583

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  ++ G    G    A + F +M  R  L  P   T  +L+  L +  K + A+ + 
Sbjct: 584 ITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL--PNLYTYSSLIYGLCQEGKADEAERMS 641

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
                 GCE  +  ++  +  L   G   EA     DM +    P  + +  L+
Sbjct: 642 EI----GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLL 691



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 160/308 (51%), Gaps = 10/308 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V     Y ALI   SK  K     +L++ M +E       E +  ++   +     
Sbjct: 510 NPNPVS----YTALIDGHSKDGKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRF 564

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A ++ D+M + G  P+   +  L+D LC+N   + A K+F +M +R   P+L  ++SL
Sbjct: 565 SEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 624

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +YG C+EGK  EA+    +M + G EP +  Y+ L+SG  + G+  +A +L+K+M+ +G 
Sbjct: 625 IYGLCQEGKADEAE----RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGF 680

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+   Y  L+ A C+  +++ A + F  +E  G +  +  Y  LI   CK+ +++    
Sbjct: 681 CPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQA 740

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D+M+++    +++ +  ++    K+ EL+ C++L+  M      P++  Y ++ R   
Sbjct: 741 LFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELS 800

Query: 430 KLGELKEA 437
           ++G+  E+
Sbjct: 801 RIGKSIES 808



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           + D Y  L+  L +  +F     L+++M KE+      E++  L+        V  A+++
Sbjct: 648 TLDTYSTLVSGLCRKGRFYEAEQLVKDM-KERGFCPDREIYYSLLIAHCKNLEVDHALKI 706

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
              +   G +    ++  L+ ALCK   V+EA  LFD M E+ +      +T L+ G  K
Sbjct: 707 FHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLK 766

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK------MTDAFELLKE 303
           EG+L     +L  M+   F P+I  Y  L    +++GK      + D  ++LK+
Sbjct: 767 EGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKVLKD 820


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 204/444 (45%), Gaps = 40/444 (9%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF  L++         +A E    M + G  P       LL    K +  + A  L+ EM
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM 212

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            R R K S+  F  ++   CKEGKL +AK  +  M+ +G +P+IV YN ++ GY   G++
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  +L  M+R+  +P++ +Y  LI  +C+  ++EEA++ F EM + G     V Y TL
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL 332

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRK 411
           I GFC    +D      D M+++GI P   TY   +H +   ++ +E  EC  ++ E+++
Sbjct: 333 IDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDE-AEC--MIKEIQE 389

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  PD   YN++I   C+    K+A  + +EM A+ + P   ++  ++H    +  + E
Sbjct: 390 KGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKE 449

Query: 472 ACEYFKEMVGRGLLS---------------------------------APQYGTLKALLN 498
           A + FK++   G+L                                   P   T   ++ 
Sbjct: 450 ADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQ 509

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R  KVE A++++  +  +G + +  ++   I      G +K+A     +M+D    P
Sbjct: 510 GHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNP 569

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEI 582
              T+  L++GL K     +A E+
Sbjct: 570 TVLTYNALVQGLCKNQEGDLAEEL 593



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 173/355 (48%), Gaps = 43/355 (12%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T    V     + S+  V+ A  +L  M +   EPD F +G L+  +CK   ++E
Sbjct: 253 KPNIVTYNTIV---HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV-------------------------- 260
           A+K+F+EM ++  +PS   + +L+ G+C +G L                           
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIH 369

Query: 261 ---------EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
                    EA+ ++ ++++ G  PD + YN L++GY +      AF L  EM   G  P
Sbjct: 370 ALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKP 429

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
              +YT L+  L +  +M+EA+  F ++   G   D + +  LI G C +  +   +E+L
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELL 489

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M +  + P+++T+  IM  H ++ ++EE  EL  EM++ G  PD  ++N +I    + 
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL--GQGCLIEACEYFKEMVGRGL 484
           G++K+A  V NEM     +P   ++  +V G     +G L E  E  KEMV +G+
Sbjct: 550 GDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAE--ELLKEMVSKGM 602



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 2/302 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  LI             A  +EM K K    T   +  L+      +   +A  ++ E
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLK-KGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           + + G  PD   +  L++  C+ ++ K+A  L DEM     KP+ + +TSLL+   K+ +
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNR 446

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +  ++   G  PD +++N L+ G+     +  AFELLK+M R    P+  ++  
Sbjct: 447 MKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNT 506

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++Q  CR  K+EEA   F EM+R G + D +++ TLISG+ +   I   + + + M+  G
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTG 566

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P  LTY  ++    K +E +   EL+ EM   G  PD + Y  +I    K+    E  
Sbjct: 567 FNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626

Query: 439 NV 440
           N 
Sbjct: 627 NT 628



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 206/461 (44%), Gaps = 11/461 (2%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           E PQ++  +       + + AR +  AI ++  +P    +P   +    L     NS ++
Sbjct: 78  ESPQVVL-DFLNHFHHKLSDARTLCLAIVIVARLP--SPKPALHLLRQALGGGTTNS-IR 133

Query: 227 EAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
           E  +     R+R  FK S+  F  L+   C   +  EA      MK+ G  P I   N+L
Sbjct: 134 EIFEFLAASRDRLGFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSL 192

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           LS + ++ +   A+ L  EM R     +  ++ ++I  LC+  K+++A      ME SG 
Sbjct: 193 LSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGV 252

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           + ++VTY T++ G+C S +++    IL +M ++ I P+  TY  ++    K+  LEE  +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +  EM + G  P    YN +I   C  G L  A    +EM    +SP   ++  ++H   
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALF 372

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +    EA    KE+  +G+  +P   T   L+N   R    + A  +   ++  G +  
Sbjct: 373 MEQRTDEAECMIKEIQEKGI--SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPT 430

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
              +T  +H L     +KEA      +    V+P    F  L+ G     N + A E+ +
Sbjct: 431 KKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLK 490

Query: 585 KVRKM-AAERQITFKMYKRRGERDLK-EKAKKQVDGRKRRA 623
            + +M     ++TF    +   R+ K E+A++  D  KRR 
Sbjct: 491 DMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG 531


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 196/436 (44%), Gaps = 45/436 (10%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           N+ H+Y+ Y A+I+ LSK R F  +  L+ ++ K + +     +F+ ++R +  A   K 
Sbjct: 130 NFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKC-GENLFITVIRNYGFAGRPKL 188

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLL 250
           AI     +P +G +P    F  LL+ L +N        +F   R++F   P++     L+
Sbjct: 189 AIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILV 248

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
              CK+  +  A  VL +M   GF P++V Y  +L GY   G M  A  +  E+  +G  
Sbjct: 249 KALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWV 308

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  +YT+L+   C+  +  +A +   EME +  E + VTY  +I  +CK +K      +
Sbjct: 309 PDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNL 368

Query: 371 LDSMIQRGILPNQLTYLHI--MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           LD M+++  +P+      +  ML  E K  +E   EL  ++ K  C PD +  + +I   
Sbjct: 369 LDDMLEKKYIPSSALCCRVIDMLCEEGK--VEVACELWKKLLKKNCTPDNAITSTLIHWL 426

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
           CK G++ EA  +++E E  S+ P T ++  ++ G    G L EA                
Sbjct: 427 CKEGKVWEARKLFDEFEKGSI-PSTLTYNALIAGMCEGGELPEAAR-------------- 471

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
                                  +W  +V KGC  N + + + I      G+ +E     
Sbjct: 472 -----------------------LWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVM 508

Query: 549 LDMMDADVMPQPDTFA 564
            +M+D   +P   T+A
Sbjct: 509 EEMLDNGCLPNKATYA 524


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 221/482 (45%), Gaps = 50/482 (10%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFAS 186
           + +PN +     Y  L+++L   R+      L+  M+    +P ++T   +  L+R    
Sbjct: 89  ASRPNAIS----YTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVT---YGTLIRGLCD 141

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLL------------------------------ 216
           A  V  A+E+L+EM + G EP+  V+ CLL                              
Sbjct: 142 AADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVM 201

Query: 217 -----DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
                D+LC++  VK+AA++ D M ER  +P++  +  L+   CKEG + EA  +   M 
Sbjct: 202 YTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMS 261

Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR--KGCDPNANSYTVLIQALCRMEK 328
           + G +PD+V YN L++G + + +M +A  LL+EM +      P+  ++  +I  LC++  
Sbjct: 262 EKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGW 321

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           M +A +    M  +GC  ++V +  LI G  +  K+ +  E++D M   G+ P+  TY  
Sbjct: 322 MRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSI 381

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++    K  ++E     + EMR  G  P+  +Y  +++  C  G + +A +++NEM+  +
Sbjct: 382 LINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD-RN 440

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
                 ++  M+HG    G    A E+ K+M+  GL+  P   T    +N   ++  +  
Sbjct: 441 CKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLI--PDAVTYSIPINMFAKSGDLAA 498

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A+ V   +   G   +V  +   I    + G  ++      +M   DV   P   + ++ 
Sbjct: 499 AERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVT 558

Query: 569 GL 570
            L
Sbjct: 559 SL 560



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 172/369 (46%), Gaps = 8/369 (2%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLF----DEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           D   +  +L ALC+   +  A  L      E R   +P+   +T+L+   C + +  +A 
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +L  M+D G  PD+V Y  L+ G      +  A ELL EM   G +PN   Y+ L+   
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           C+  + E   + F EM   G E DVV YT LI   C+  K+ +   ++D M +RG+ PN 
Sbjct: 175 CKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNV 234

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +TY  ++ +  K+  + E ++L   M + G  PDV  YN +I     + E+ EA+ +  E
Sbjct: 235 VTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEE 294

Query: 444 MEAAS--LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           M      + P   +F  ++HG    G + +A +    M   G            L+  LL
Sbjct: 295 MMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRC--NLVAFNLLIGGLL 352

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           R  KV+ A ++   + + G + + + ++I I+       V+ A SY  +M    + P+P 
Sbjct: 353 RVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPV 412

Query: 562 TFAKLMRGL 570
            +  L++ +
Sbjct: 413 HYIPLLKAM 421



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 188/397 (47%), Gaps = 16/397 (4%)

Query: 131 QPNYVHSYDVYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           +P+ V    +Y ALI SL    K++K   V  +M E R  +P ++T  V +  M +  S 
Sbjct: 196 EPDVV----MYTALIDSLCRHGKVKKAARVMDMMTE-RGLEPNVVTYNVLINSMCKEGS- 249

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE---RFKPSLR 244
             V++A+++   M + G +PD   +  L+  L     + EA  L +EM +   R +P L 
Sbjct: 250 --VREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLM 307

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            F S+++G CK G + +A  V   M + G   ++V +N L+ G  ++ K+  A EL+ EM
Sbjct: 308 TFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEM 367

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI 364
              G  P++ +Y++LI   C+M ++E A     EM   G E + V Y  L+   C    +
Sbjct: 368 ASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMM 427

Query: 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
            +  ++ + M  R    +   Y  ++    K  E +   E + +M   G +PD   Y++ 
Sbjct: 428 GQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIP 486

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I +  K G+L  A  V  +M A+   P    F  ++ G+  +G   +  E  +EM  + +
Sbjct: 487 INMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDV 546

Query: 485 LSAPQ-YGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
              P+   T+   L + +  QK+  +   +   ++KG
Sbjct: 547 ALDPKIISTIVTSLGASIEGQKLLQSLPGFDTEISKG 583



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 166/360 (46%), Gaps = 6/360 (1%)

Query: 241 PSLR---HFTSLLYGWCKEGKLVEAKYVLVQMKDA---GFEPDIVVYNNLLSGYAQMGKM 294
           PS+R    + ++L   C++G L  A ++L  M         P+ + Y  L+       + 
Sbjct: 51  PSVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRA 110

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  LL+ M+  G  P+  +Y  LI+ LC    ++ A     EM  SG E +VV Y+ L
Sbjct: 111 AQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCL 170

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G+CK+ + +   ++ + M  RGI P+ + Y  ++ +  +  ++++   +M  M + G 
Sbjct: 171 LHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGL 230

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+V  YNV+I   CK G ++EA+++   M    + P   ++  ++ G      + EA  
Sbjct: 231 EPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMA 290

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             +EM+       P   T  ++++ L +   +  A  V + +   GC  N+ A+ + I  
Sbjct: 291 LLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGG 350

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L     VK+A     +M  + + P   T++ L+ G  K+   + A     ++R    E +
Sbjct: 351 LLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPE 410


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 184/371 (49%), Gaps = 38/371 (10%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           ++ A+E+   MP  G +PD   +  ++DALC      EAAK++  + ++   P  +   +
Sbjct: 135 LETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVA 194

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G C  G++  A  ++V +   G + + +VYN L+ G+ +MG++  A ++   M R G
Sbjct: 195 LVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTG 254

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD--------------------- 347
           C P+  +Y +L+   C    ++EA R    MERSG E D                     
Sbjct: 255 CVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAH 314

Query: 348 --------------VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
                         VV+Y T+I+ FCK+R+  + YE+ + M  +GI P+ +T+  ++ A 
Sbjct: 315 LMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAF 374

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            ++       +L+ EM K+  +PD   Y  V+   CK G++  A +V+ +M    ++P  
Sbjct: 375 LREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDV 434

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            S+  +++GF     +++A   F EM  +GL   P   T K ++  L+R +K+ +A  VW
Sbjct: 435 ISYNALLNGFCKTSRVMDAMHLFDEMQSKGLY--PDEVTYKLIVGGLIRGKKISLACRVW 492

Query: 514 SCIVTKGCELN 524
             ++ +G  LN
Sbjct: 493 DQMMERGFTLN 503



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 197/463 (42%), Gaps = 49/463 (10%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK 240
           + +   A ++ +AI + D+M +  C      +   +  L ++S +  A   +   R    
Sbjct: 17  ISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYY---RRHVI 73

Query: 241 P---SLRHFT--SLLYGWCKEGKLVEAKYV---LVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           P   SL  FT    +   C     +    +   L+ M   GF PDI  +N  L+   +  
Sbjct: 74  PRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQN 133

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
           ++  A EL   M  KG DP+  SYT++I ALC  ++ +EA + +  +   G   D     
Sbjct: 134 RLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACV 193

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
            L+ G C   ++D  YE++  +I+ G+  N L Y  ++    +   +++ +++   M + 
Sbjct: 194 ALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRT 253

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF--------- 463
           GCVPD+  YN+++   C+ G + EAV +   ME + + P   S+  ++ GF         
Sbjct: 254 GCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRA 313

Query: 464 ----------------LGQGCLIEA-C---------EYFKEMVGRGLLSAPQYGTLKALL 497
                           +    +I A C         E F+EM G+G+   P   T   L+
Sbjct: 314 HLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGI--RPDMVTFNILI 371

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++ LR     + K +   +       +   +T  +  L  NG V  A S   DM++  V 
Sbjct: 372 DAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVN 431

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVR-KMAAERQITFKM 599
           P   ++  L+ G  K      A  + ++++ K     ++T+K+
Sbjct: 432 PDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKL 474



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 131/274 (47%), Gaps = 1/274 (0%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
           + + V+  L+  F     V KA+++   M + GC PD   +  LL+  C+   V EA +L
Sbjct: 222 VNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRL 281

Query: 232 FDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
            + M R   +P L  +  LL G+CK   +  A  ++V+        D+V YN +++ + +
Sbjct: 282 VETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCK 341

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
             +    +EL +EM  KG  P+  ++ +LI A  R        +   EM +     D + 
Sbjct: 342 ARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIF 401

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           YT ++   CK+ K+D  + +   M++ G+ P+ ++Y  ++    K   + + + L  EM+
Sbjct: 402 YTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQ 461

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
             G  PD   Y +++    +  ++  A  VW++M
Sbjct: 462 SKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQM 495



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 2/204 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+K   K         +M E R +   +     +  ++  F  AR  +K  E+ +EM
Sbjct: 297 YNELLKGFCKANMVDRAHLMMVE-RMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEM 355

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G  PD   F  L+DA  +  S     KL DEM + R  P    +T+++   CK GK+
Sbjct: 356 CGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKV 415

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  V   M + G  PD++ YN LL+G+ +  ++ DA  L  EM+ KG  P+  +Y ++
Sbjct: 416 DVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLI 475

Query: 320 IQALCRMEKMEEANRAFVEMERSG 343
           +  L R +K+  A R + +M   G
Sbjct: 476 VGGLIRGKKISLACRVWDQMMERG 499



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 130/313 (41%), Gaps = 43/313 (13%)

Query: 110 VINRC-GDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           V+  C G   +L Y   +   K    V+S  VY ALI    +M +      +   M +  
Sbjct: 196 VVGLCSGGRVDLAYELVVGVIKGGVKVNSL-VYNALIDGFCRMGRVDKAMKIKAFMSRTG 254

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P L+T   + IL+       MV +A+ +++ M + G EPD + +  LL   CK + V 
Sbjct: 255 CVPDLVT---YNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVD 311

Query: 227 EAA-----------------------------------KLFDEMRER-FKPSLRHFTSLL 250
            A                                    +LF+EM  +  +P +  F  L+
Sbjct: 312 RAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILI 371

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
             + +EG     K +L +M      PD + Y  ++    + GK+  A  + ++M   G +
Sbjct: 372 DAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVN 431

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P+  SY  L+   C+  ++ +A   F EM+  G   D VTY  ++ G  + +KI     +
Sbjct: 432 PDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRV 491

Query: 371 LDSMIQRGILPNQ 383
            D M++RG   N+
Sbjct: 492 WDQMMERGFTLNR 504


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 203/393 (51%), Gaps = 3/393 (0%)

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWC 254
           ++D M   GC+PD   +G +++ LCK      A  L ++M + + +P +  + +++ G C
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           K   + +A  +  +M+  G  P++V Y++L+S     G+ +DA  LL +M  +  +P+  
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +++ LI A  +  K+ EA + + EM +   +  +VTY++LI+GFC   ++D   ++ + M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           + +   P+ +TY  ++    K + +EE +E+  EM + G V +   YN++I+   + G+ 
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 242

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
             A  ++ EM +  + P   ++  ++ G    G L +A   F E + R  +    Y T  
Sbjct: 243 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF-EYLQRSKMEPTIY-TYN 300

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
            ++  + +A KVE   D++  +  KG + +V A+   I      G  +EA +   +M + 
Sbjct: 301 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 360

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
             +P    +  L+R   +  +R+ +AE+ +++R
Sbjct: 361 GTLPNSGCYNTLIRARLRDGDREASAELIKEMR 393



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 191/392 (48%), Gaps = 16/392 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QP+ V     Y  ++  L K       + L+ +M + K  P ++   ++  ++      +
Sbjct: 13  QPDLV----TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLCKYK 65

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            +  A+ +  EM   G  P+   +  L+  LC      +A++L  +M ER   P +  F+
Sbjct: 66  HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 125

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L+  + KEGKLVEA+ +  +M     +P IV Y++L++G+    ++ +A ++ + M  K
Sbjct: 126 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 185

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            C P+  +Y  LI+  C+ +++EE    F EM + G   + VTY  LI G  ++   D  
Sbjct: 186 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 245

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            EI   M+  G+ PN +TY  ++    K  +LE+ + +   +++    P +  YN++I  
Sbjct: 246 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 305

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G++++  +++  +    + P   ++  M+ GF  +G   EA   FKEM   G L  
Sbjct: 306 MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL-- 363

Query: 488 PQYGTLKALLNSLL----RAQKVEMAKDVWSC 515
           P  G    L+ + L    R    E+ K++ SC
Sbjct: 364 PNSGCYNTLIRARLRDGDREASAELIKEMRSC 395



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I  L K +       L +EM  +  +P ++T    +  +  +        A  +L
Sbjct: 53  IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW---SDASRLL 109

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M +    PD F F  L+DA  K   + EA KL+DEM +R   PS+  ++SL+ G+C  
Sbjct: 110 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 169

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-------- 308
            +L EAK +   M      PD+V YN L+ G+ +  ++ +  E+ +EM ++G        
Sbjct: 170 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 229

Query: 309 ------------CD---------------PNANSYTVLIQALCRMEKMEEANRAFVEMER 341
                       CD               PN  +Y  L+  LC+  K+E+A   F  ++R
Sbjct: 230 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 289

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           S  E  + TY  +I G CK+ K++  +++  ++  +G+ P+ + Y  ++    +K   EE
Sbjct: 290 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 349

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L  EM++ G +P+   YN +IR   + G+ + +  +  EM +   + G  S + +V 
Sbjct: 350 ADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA-GDASTIGLVT 408

Query: 462 GFLGQG 467
             L  G
Sbjct: 409 NMLHDG 414



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 6/298 (2%)

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           L+  M  KGC P+  +Y V++  LC+    + A     +ME+   E  V+ Y T+I G C
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKIGCVPD 417
           K + +D    +   M  +GI PN +TY  ++          +   L+ +M  RKI   PD
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN--PD 120

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  ++ +I    K G+L EA  +++EM   S+ P   ++  +++GF     L EA + F+
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            MV +     P   T   L+    + ++VE   +V+  +  +G   N   + I I  LF 
Sbjct: 181 FMVSKHCF--PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            G    A     +M+   V P   T+  L+ GL K    + A  + E +++   E  I
Sbjct: 239 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 296


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 171/326 (52%), Gaps = 20/326 (6%)

Query: 132 PNYVHSYDVYRALIKS--LSKMRKFGAVWALMEEMRKE--KPQLITTEVFV---ILMRRF 184
           PN V     Y ALI    +   R+ G  +AL  EMR++  +P L T    +        F
Sbjct: 71  PNEV----TYTALINGYFVRGHREMG--FALFAEMRRDGVEPNLYTYNCLIGEWCRTGEF 124

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSL 243
            SAR++       DEMP  G   +   +  L+  LC++S +K+A +LF+ MR E  +PS+
Sbjct: 125 KSARLL------FDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSI 178

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F  L+ G+ K GK+  A +   QMK AG  P +V YN L+ G+ ++  +  A     +
Sbjct: 179 VTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLD 238

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M+ +G  P   +YT+LI A  +  +M+ A     EME++G E DV +Y  L+   C   K
Sbjct: 239 MKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGK 298

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +    ++  SM  +G+ PN + Y  ++  + ++    + + L+ EMRK G +P+V++Y +
Sbjct: 299 MMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCL 358

Query: 424 VIRLACKLGELKEAVNVWNEMEAASL 449
            IRL C  G+ +EA  + ++ME A L
Sbjct: 359 TIRLLCNEGKCQEAEALIDDMEHAGL 384



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 1/297 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTS 248
           V +A  V D MP+ G  P+E  +  L++        +    LF EMR +  +P+L  +  
Sbjct: 54  VAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNC 113

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  WC+ G+   A+ +  +M   G   ++V YN L++G  +  K+ DA +L + MRR+G
Sbjct: 114 LIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREG 173

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  ++ +LI    +  KM  A   F +M+ +G    VVTY  LI GFC+ R I R  
Sbjct: 174 IRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAV 233

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
                M +RG+ P ++TY  ++ A  K+ E++    ++ EM K G   DV +Y V++   
Sbjct: 234 RAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHAL 293

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           C  G++  A  ++  M+   + P +  + +M++G+  +G   +A     EM   GL+
Sbjct: 294 CMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLI 350



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 155/325 (47%), Gaps = 4/325 (1%)

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T+L++  C+ G + EA+ V   M   G  P+ V Y  L++GY   G     F L  EMRR
Sbjct: 42  TALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRR 101

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G +PN  +Y  LI   CR  + + A   F EM   G   +VV+Y  LI+G C+  K+  
Sbjct: 102 DGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKD 161

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++ ++M + GI P+ +T+  ++  + K  ++   +    +M+  G  P V  YN +I 
Sbjct: 162 AVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELIC 221

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-L 485
             C++ ++  AV  + +M+   L+P   ++ +++  F  +  +  A     EM   GL +
Sbjct: 222 GFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEV 281

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
               YG    LL++L    K+  A+ ++  +  KG + N   + + I+     G   +A 
Sbjct: 282 DVQSYGV---LLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKAL 338

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGL 570
              ++M    ++P   ++   +R L
Sbjct: 339 RLIMEMRKNGLIPNVASYCLTIRLL 363



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 129/268 (48%), Gaps = 2/268 (0%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           D+     L+    Q G + +A  +   M R G  PN  +YT LI         E     F
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALF 96

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            EM R G E ++ TY  LI  +C++ +      + D M  +G++ N ++Y  ++    + 
Sbjct: 97  AEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRH 156

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            +L++ V+L   MR+ G  P +  +N++I    K G++  A++ +N+M+AA L P   ++
Sbjct: 157 SKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTY 216

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++ GF     +  A   F +M  RGL  AP   T   L+ +  +  +++ A  + S +
Sbjct: 217 NELICGFCRVRDIARAVRAFLDMKERGL--APTKVTYTILIAAFAKENEMDRAFMMLSEM 274

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEA 544
              G E++V ++ + +H+L   G +  A
Sbjct: 275 EKAGLEVDVQSYGVLLHALCMEGKMMHA 302



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 27/275 (9%)

Query: 67  HNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYM 126
           HN  S++      IL     R  KL+ A+Q    + R G+   ++       NL    Y 
Sbjct: 141 HNVVSYN------ILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTF-----NLLIDGYG 189

Query: 127 WASKQPNYVHSYD------------VYRALIKSLSKMRKFG-AVWALMEEMRKEKPQLIT 173
            A K  N +H ++             Y  LI    ++R    AV A ++   KE+    T
Sbjct: 190 KAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLD--MKERGLAPT 247

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
              + IL+  FA    + +A  +L EM K G E D   +G LL ALC    +  A KLF 
Sbjct: 248 KVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQ 307

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
            M  +  KP+   +  ++YG+ +EG   +A  ++++M+  G  P++  Y   +      G
Sbjct: 308 SMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEG 367

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           K  +A  L+ +M   G   +     +L+ A  R+ 
Sbjct: 368 KCQEAEALIDDMEHAGLQTSETICRILLDAKARLH 402


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 225/500 (45%), Gaps = 57/500 (11%)

Query: 106 LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR 165
           L + ++N   D   + + ++ W     N+ HS      +I +L+K ++F     L+E + 
Sbjct: 43  LNQVLLNLSLDGCCVSWAFFKWVESNLNHXHSLQSSWTMIHTLAKHKQFKTAQNLLERIA 102

Query: 166 K----EKPQLIT------------TEVFVILMRRFASARMVKKAIEVLD----------- 198
                  P ++             +++   L+  +A++RM + AI+V +           
Sbjct: 103 VRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHL 162

Query: 199 ------------------------EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
                                   +M + G  P+  +F  L+ A CK+  V++A +L +E
Sbjct: 163 HACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE 222

Query: 235 MRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M  RF  P L  + +L+  +CK+G   EA  +  +M+  G  PDIV YN+L+ G+ + G+
Sbjct: 223 MESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGR 282

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           M +A  L +E+   G  PN  +YT LI   CR+  +EEA R    ME  G    VVTY +
Sbjct: 283 MREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNS 340

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           ++   C+  KI     +L+ M +R + P+ +T   ++ A+ K  ++   +++  +M + G
Sbjct: 341 ILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAG 400

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD   +  +I   CKL E+  A     EM  A  SP   ++  +V  +  Q       
Sbjct: 401 LKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVI 460

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
               E+  +GL         +AL+  L +  K+E A+ +++ +  KG + +   +T   +
Sbjct: 461 RLPDELSRKGLFV--DISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAY 518

Query: 534 SLFSNGHVKEACSYCLDMMD 553
           + F  G    A S  LD MD
Sbjct: 519 AYFKAGKAI-AASDMLDEMD 537



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 171/377 (45%), Gaps = 35/377 (9%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            L+ SL+K R    VW + ++M +    +    +F +L+     +  V+KA ++L+EM  
Sbjct: 167 VLLNSLAKARLTNMVWKVYKKMVRVGV-VPNIHIFNVLIHACCKSGDVEKAEQLLNEMES 225

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVE 261
               PD F +  L+   CK     EA  + D M R    P +  + SL+YG+C+EG++ E
Sbjct: 226 RFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMRE 285

Query: 262 AKYVLVQMKDA---------------------------------GFEPDIVVYNNLLSGY 288
           A  +  ++  A                                 G  P +V YN++L   
Sbjct: 286 ALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            + GK+ DA  LL EM  +  +P+  +   LI A C++  M  A +   +M  +G + D 
Sbjct: 346 CEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            T+  LI GFCK  ++D   E L  M+  G  P+  TY  ++ ++  ++  E  + L  E
Sbjct: 406 FTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDE 465

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           + + G   D+S Y  +IR  CK+ +++ A  ++  M+   +   +  +  + + +   G 
Sbjct: 466 LSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGK 525

Query: 469 LIEACEYFKEMVGRGLL 485
            I A +   EM  R L+
Sbjct: 526 AIAASDMLDEMDKRRLM 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 11/304 (3%)

Query: 300 LLKEMRRKGCDPNANS----YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +L  + R   DP++NS    + V+  A  RM   ++A + F  M   G +  +   T L+
Sbjct: 112 VLNAVVRIHDDPDSNSQILSWLVIFYANSRMT--QDAIQVFEHMRVHGFKPHLHACTVLL 169

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +   K+R  +  +++   M++ G++PN   +  ++ A  K  ++E+  +L+ EM      
Sbjct: 170 NSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIF 229

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD+  YN +I L CK G   EA+ + + ME   +SP   ++  +++GF  +G + EA   
Sbjct: 230 PDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRL 289

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F+E+ G    + P + T   L++   R   +E A  +   +  +G    V  +   +  L
Sbjct: 290 FREING----ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE-RQ 594
              G +K+A     +M +  V P   T   L+    K+ +   A ++ +K+ +   +  Q
Sbjct: 346 CEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 595 ITFK 598
            TFK
Sbjct: 406 FTFK 409



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 4/299 (1%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L+  YA      DA ++ + MR  G  P+ ++ TVL+ +L +        + + +M R G
Sbjct: 133 LVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVG 192

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++  +  LI   CKS  +++  ++L+ M  R I P+  TY  ++  + KK    E +
Sbjct: 193 VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEAL 252

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            +   M + G  PD+  YN +I   C+ G ++EA+ ++ E+  A  +P   ++  ++ G+
Sbjct: 253 GIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGA--TPNHVTYTTLIDGY 310

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
                L EA    + M   GL   P   T  ++L  L    K++ A  + + +  +  E 
Sbjct: 311 CRVNDLEEALRLREVMEVEGL--HPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 368

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
           +       I++    G +  A      M++A + P   TF  L+ G  KL+    A E 
Sbjct: 369 DNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEF 427


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 167/318 (52%), Gaps = 5/318 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P LI    F  L+        +K+A E+L+EM + G +P+ +    L+D LCK    ++A
Sbjct: 296 PNLIN---FSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKA 352

Query: 229 AKLFDEM--RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            +LF ++   + +KP++  +T ++ G+CKE KL  A+ +L++MK+ G  P+   Y  L+ 
Sbjct: 353 FRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLID 412

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G+ + G    A+EL+  M ++G  PN  +Y  +I  LC+  +  EA +      +SG  A
Sbjct: 413 GHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHA 472

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           D VTYT LIS FC+     +   I   M + G+ P+  TY  ++    +++++EE  +L 
Sbjct: 473 DKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLF 532

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            E   +G +P    Y  +I   C+ G +  A+  +++M      P + ++  ++ G   +
Sbjct: 533 EEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNE 592

Query: 467 GCLIEACEYFKEMVGRGL 484
             L EAC+ ++ M+  GL
Sbjct: 593 SKLDEACQLYETMIDNGL 610



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/508 (24%), Positives = 221/508 (43%), Gaps = 89/508 (17%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           TEV   ++R F+    +K+A+ ++ EM  +G      +   ++D       V  A K+FD
Sbjct: 158 TEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFD 217

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF------------------ 274
           EM +R   P    +  ++ G+C+ G++ +    L  M + G+                  
Sbjct: 218 EMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKG 277

Query: 275 -----------------EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
                             P+++ +++L++G  ++G +  AFE+L+EM RKG  PN  ++T
Sbjct: 278 FVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHT 337

Query: 318 VLIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            LI  LC+    E+A R F+++ RS   + +V TYT +I+G+CK  K++R   +L  M +
Sbjct: 338 ALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKE 397

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL-- 434
           +G++PN  TY  ++  H K        ELM  M K G  P++  YN +I   CK G    
Sbjct: 398 QGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPE 457

Query: 435 ---------------------------------KEAVNVWNEMEAASLSPGTDSFVVMVH 461
                                            K+A+ +++ M    L P   ++ V++ 
Sbjct: 458 AYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIA 517

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            F  Q  + E+ + F+E VG GLL  P   T  +++    R   +  A   +  +   GC
Sbjct: 518 TFCRQKKVEESEKLFEEAVGLGLL--PTKETYTSMICGYCRDGHISSAIKFFHKMRDYGC 575

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP--------------QPDTFAKLM 567
           + +   +   I  L +   + EAC     M+D  + P              Q D+ A  M
Sbjct: 576 KPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDS-ATAM 634

Query: 568 RGLKKLYNRQIAAEITEKVRKMAAERQI 595
             L++L  +     +   +RK+ +E+++
Sbjct: 635 IILERLEKKLWIRTVNTLIRKLCSEKKV 662


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 204/444 (45%), Gaps = 40/444 (9%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF  L++         +A E    M + G  P       LL    K +  + A  L+ EM
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM 212

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            R R K S+  F  ++   CKEGKL +AK  +  M+ +G +P+IV YN ++ GY   G++
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A  +L  M+R+  +P++ +Y  LI  +C+  ++EEA++ F EM + G     V Y TL
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL 332

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRK 411
           I GFC    +D      D M+++GI P   TY   +H +   ++ +E  EC  ++ E+++
Sbjct: 333 IDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDE-AEC--MIKEIQE 389

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  PD   YN++I   C+    K+A  + +EM A+ + P   ++  ++H    +  + E
Sbjct: 390 KGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKE 449

Query: 472 ACEYFKEMVGRGLLS---------------------------------APQYGTLKALLN 498
           A + FK++   G+L                                   P   T   ++ 
Sbjct: 450 ADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQ 509

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              R  KVE A++++  +  +G + +  ++   I      G +K+A     +M+D    P
Sbjct: 510 GHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNP 569

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEI 582
              T+  L++GL K     +A E+
Sbjct: 570 TVLTYNALVQGLCKNQEGDLAEEL 593



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 174/355 (49%), Gaps = 43/355 (12%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           KP ++T    V     + S+  V+ A  +L  M +   EPD F +G L+  +CK   ++E
Sbjct: 253 KPNIVTYNTIV---HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV-------------------------- 260
           A+K+F+EM ++  +PS   + +L+ G+C +G L                           
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIH 369

Query: 261 ---------EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
                    EA+ ++ ++++ G  PD + YN L++GY +      AF L  EM   G  P
Sbjct: 370 ALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKP 429

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
              +YT L+  L +  +M+EA+  F ++   G   DV+ +  LI G C +  +   +E+L
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELL 489

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M +  + P+++T+  IM  H ++ ++EE  EL  EM++ G  PD  ++N +I    + 
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL--GQGCLIEACEYFKEMVGRGL 484
           G++K+A  V NEM     +P   ++  +V G     +G L E  E  KEMV +G+
Sbjct: 550 GDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAE--ELLKEMVSKGM 602



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 146/302 (48%), Gaps = 2/302 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  LI             A  +EM K K    T   +  L+      +   +A  ++ E
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLK-KGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           + + G  PD   +  L++  C+ ++ K+A  L DEM     KP+ + +TSLL+   K+ +
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNR 446

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +  ++   G  PD++++N L+ G+     +  AFELLK+M R    P+  ++  
Sbjct: 447 MKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNT 506

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++Q  CR  K+EEA   F EM+R G + D +++ TLISG+ +   I   + + + M+  G
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTG 566

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P  LTY  ++    K +E +   EL+ EM   G  PD + Y  +I    K+    E  
Sbjct: 567 FNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626

Query: 439 NV 440
           N 
Sbjct: 627 NT 628



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 206/461 (44%), Gaps = 11/461 (2%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           E PQ++  +       + + AR +  AI ++  +P    +P   +    L     NS ++
Sbjct: 78  ESPQVVL-DFLNHFHHKLSDARTLCLAIVIVARLP--SPKPALHLLKQALGGGTTNS-IR 133

Query: 227 EAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
           E  +     R+R  FK S+  F  L+   C   +  EA      MK+ G  P I   N+L
Sbjct: 134 EIFEFLAASRDRLGFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSL 192

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           LS + ++ +   A+ L  EM R     +  ++ ++I  LC+  K+++A      ME SG 
Sbjct: 193 LSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGV 252

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           + ++VTY T++ G+C S +++    IL +M ++ I P+  TY  ++    K+  LEE  +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +  EM + G  P    YN +I   C  G L  A    +EM    +SP   ++  ++H   
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALF 372

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +    EA    KE+  +G+  +P   T   L+N   R    + A  +   ++  G +  
Sbjct: 373 MEQRTDEAECMIKEIQEKGI--SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPT 430

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
              +T  +H L     +KEA      +    V+P    F  L+ G     N + A E+ +
Sbjct: 431 KKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLK 490

Query: 585 KVRKM-AAERQITFKMYKRRGERDLK-EKAKKQVDGRKRRA 623
            + +M     ++TF    +   R+ K E+A++  D  KRR 
Sbjct: 491 DMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG 531


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 196/416 (47%), Gaps = 10/416 (2%)

Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           +AL  ++ + +  L TT  F I++R   +     +A+E+L +MP+    P+   +  ++ 
Sbjct: 101 FALFADIYRLRLPLCTT-TFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIA 155

Query: 218 ALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-F 274
             C    V+ A ++  EMRER    P    + +L+ GWCK G++ +A  V  +M   G  
Sbjct: 156 GFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEV 215

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
            P  V+YN L+ GY  +GK+  A +  ++M ++G      +Y +L+ AL    +  +A  
Sbjct: 216 APSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYA 275

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              EM+++G   DV TY  LI+G+CK     +  E+ + M Q+G+    +TY  ++    
Sbjct: 276 VLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFS 335

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           +K +++E   L     K G  PDV  YN +I   C  G+++ A  +  EME   + P   
Sbjct: 336 RKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDM 395

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++ GF   G L EA     EM  RG+   P   +   L++       ++ A  V  
Sbjct: 396 TYNTLMRGFCLLGRLDEARTLIDEMTKRGI--QPDLVSYNTLISGYSMKGDIKDALRVRD 453

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            ++ KG    +  +   I  L       +A +   +M+   + P   T+  L+ GL
Sbjct: 454 EMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 176/374 (47%), Gaps = 12/374 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y  +I       +  A   +M EMR+          +  L+  +     +
Sbjct: 144 RPNAV----TYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRM 199

Query: 191 KKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + A++V DEM   G   P   ++  L+   C    +  A +  ++M +R    ++  +  
Sbjct: 200 EDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNL 259

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++    + +  +A  VL +M+  GF PD+  YN L++GY + G    A E+ +EM +KG
Sbjct: 260 LMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKG 319

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
               A +YT LI    R  +++E +R F    + G   DVV Y  LI+  C    ++R Y
Sbjct: 320 VRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAY 379

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           EI+  M ++ I P+ +TY  +M        L+E   L+ EM K G  PD+ +YN +I   
Sbjct: 380 EIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGY 439

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF--LGQGCLIEACEYFKEMVGRGLLS 486
              G++K+A+ V +EM     +P   ++  ++ G   + QG   +A    KEMV +G+  
Sbjct: 440 SMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGD--DAENLMKEMVAKGI-- 495

Query: 487 APQYGTLKALLNSL 500
            P   T  +L+  L
Sbjct: 496 TPDDSTYISLIEGL 509


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 195/396 (49%), Gaps = 7/396 (1%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239
           +++    A  V  A+ +L+ M K G  PD      L++ LCK   ++EA +    M    
Sbjct: 55  VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTI 114

Query: 240 K---PSLRHFTSLLYGWCKEGKLVEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMT 295
                S   + SLL   CK  K+ +A  +   M  +    PD+V Y+ L+ G+ ++ ++ 
Sbjct: 115 STRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELG 174

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A +L K+M    C PN  +Y   +  L R  ++ +A   + EM  +GC  DV+TY+TLI
Sbjct: 175 RAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLI 234

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GF  +RK D+ +E+ ++MI RG  PN +TY  ++    K+ + +E  EL  +M + GC 
Sbjct: 235 HGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCD 294

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD   Y  ++   C +G++++AV V++EM +    P   ++  ++ GF   G   EA + 
Sbjct: 295 PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQL 354

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI-VTKGCELNVYAWTIWIHS 534
           F+ MV R     P   +   +++ L +A++++ A +V+  +    GC  ++  +   I  
Sbjct: 355 FQVMVSRE--CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFG 412

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           L     + EA     ++    + P P  F  L+  +
Sbjct: 413 LCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAM 448



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 171/365 (46%), Gaps = 39/365 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +L+ SL K +K    +A+   M  E+  +                             
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVV----------------------------- 154

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
                 PD   +  L+D  CK   +  A KL+ +M +    P++  + + L G  ++G++
Sbjct: 155 ------PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRI 208

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A+ V  +M  AG  PD++ Y+ L+ G++   K   A EL + M  +GC PNA +Y  L
Sbjct: 209 ADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCL 268

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +  LC+  K +EA+  F +M   GC+ D VTYTTL+ GFC   KI++  E+ D M+ +G 
Sbjct: 269 LHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH 328

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ + Y  ++    +  +  E  +L   M    C PD  ++N++I    K   L +AV 
Sbjct: 329 DPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVE 388

Query: 440 VWNEMEA-ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           V+  ME     SP   ++  ++ G  G+  L EA + FKE + R  LS P       LL 
Sbjct: 389 VFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKE-IDRLKLS-PDPHAFNVLLE 446

Query: 499 SLLRA 503
           ++  A
Sbjct: 447 AMYAA 451



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 168/331 (50%), Gaps = 8/331 (2%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY---NNLLSGYAQMGKMTDAFELLK 302
           +T+ L G CK GK+ +A      M+++            ++++    + G++  A  LL+
Sbjct: 14  WTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLLE 73

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER--SGCEADVVTYTTLISGFCK 360
            M ++G  P+  ++++LI  LC+ +K++EA      M R  S   +   +Y +L++  CK
Sbjct: 74  TMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLCK 133

Query: 361 SRKIDRCYEILDSMI-QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           ++K+ + + I  +M+ +R ++P+ ++Y  ++    K +EL    +L  +M  + CVP+V+
Sbjct: 134 AKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVT 193

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN  +    + G + +A  V+ EM +A  SP   ++  ++HGF       +A E F+ M
Sbjct: 194 TYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAM 253

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           + RG    P   T   LL+ L +  K + A +++  +V +GC+ +   +T  ++   + G
Sbjct: 254 ISRG--CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVG 311

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +++A     +M+     P    +  L++G 
Sbjct: 312 KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGF 342



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 47/318 (14%)

Query: 312 NANSYTVLIQALCRMEKME---EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           N  ++T  +  LC+  K+E   EA R   E   S       T  ++I   CK+ ++D   
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHE--KKEELEECVELMGEM------RKIGC------ 414
            +L++MI+RG  P+  T  H ML +E  K ++++E  E +  M      R   C      
Sbjct: 70  SLLETMIKRGYCPDMAT--HSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSL 127

Query: 415 --------------------------VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
                                     VPDV +Y+++I   CK+ EL  A  ++ +M   +
Sbjct: 128 LNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN 187

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
             P   ++   ++G + +G + +A   ++EM+  G   +P   T   L++    A+K + 
Sbjct: 188 CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAG--CSPDVITYSTLIHGFSLARKHDQ 245

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A +++  ++++GC  N   +   +H L       EA      M++    P   T+  L+ 
Sbjct: 246 AHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLY 305

Query: 569 GLKKLYNRQIAAEITEKV 586
           G   +   + A E+ +++
Sbjct: 306 GFCNVGKIEQAVEVFDEM 323


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 197/407 (48%), Gaps = 11/407 (2%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           + P + T  + +   RR     +   A+ V   + + G  PD   +  L+D   K   V 
Sbjct: 118 DAPTIYTYNILIDCYRRMHRPEL---ALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVD 174

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A +LF +M E+   P +  + SL+ G CK  ++V+++ VL QM DAG  P+   YN+L+
Sbjct: 175 KAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLI 234

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDP---NANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            GY+  G   ++  + KEM   G  P   N NS+   I ALCR  +++EA   F  M   
Sbjct: 235 YGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSF---IHALCRHNRIKEAKDIFDSMVLK 291

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G + ++++Y+TL+ G+           +++ M+ +GI+PN   +  ++ A+ +   +++ 
Sbjct: 292 GPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKA 351

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + +  +M+  G +PD   +  VI   C++G L +A++ +N M    + P    +  ++ G
Sbjct: 352 MLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQG 411

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
               G L++A E   EM+ +  +  P      +++N+L +  +V   KD+   +V  G  
Sbjct: 412 CCNHGELVKAKELISEMMNKD-IPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQR 470

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            NV  +   +      G+++EA +    M    + P    +  L+ G
Sbjct: 471 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDG 517



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 185/406 (45%), Gaps = 8/406 (1%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
           V ++  +  LI + ++         + E+M + K  +  T  F  ++        +  A+
Sbjct: 329 VPNHRFFNILINAYARCGMMDKAMLIFEDM-QNKGMIPDTVTFATVISSLCRIGRLDDAL 387

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYG 252
              + M   G  P E V+ CL+   C +  + +A +L  EM  ++   P +++F+S++  
Sbjct: 388 HKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINN 447

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
             KEG++ E K ++  M   G  P++V +N+L+ GY  +G M +AF LL  M   G +PN
Sbjct: 448 LFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 507

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
              Y  L+   C+  ++++A   F +M   G +   V Y  ++ G  ++R+     ++  
Sbjct: 508 CYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFH 567

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI+ G   +  TY  ++    +    +E   L+ ++  +    D+  +N+VI    K+G
Sbjct: 568 EMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVG 627

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
             +EA  ++  +    L P   ++ +M+   + +    EA   F  +   G   AP    
Sbjct: 628 RRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSG--RAPDSRL 685

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI-WIHSLFS 537
           L  ++  LL+  +V  A +  S I      L + A TI  + SLFS
Sbjct: 686 LNHIVRMLLKKAEVAKASNYLSIIDEN--NLTLEASTISLLASLFS 729



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 194/420 (46%), Gaps = 10/420 (2%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F IL+  +A   M+ KA+ + ++M   G  PD   F  ++ +LC+   + +A   F+ M 
Sbjct: 335 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 394

Query: 237 E-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY-NNLLSGYAQMGKM 294
           +    PS   +  L+ G C  G+LV+AK ++ +M +    P  V Y +++++   + G++
Sbjct: 395 DIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRV 454

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +  +++  M + G  PN  ++  L++  C +  MEEA      M   G E +   Y TL
Sbjct: 455 AEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 514

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G+CK+ +ID    +   M+ +G+ P  + Y  I+    +        ++  EM + G 
Sbjct: 515 VDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGT 574

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
              +  Y VV+   C+     EA  +  ++ A ++     +F +++   L  G   EA E
Sbjct: 575 TVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKE 634

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            F  +   GL+  P   T   ++++L++ +  E A +++  +   G   +       +  
Sbjct: 635 LFAAISTYGLV--PTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRM 692

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594
           L     V +A +Y L ++D + +    +   L   L  L++R+   +  E ++ + A+ Q
Sbjct: 693 LLKKAEVAKASNY-LSIIDENNLTLEASTISL---LASLFSRE--GKCREHIKLLPAKYQ 746



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 155/331 (46%), Gaps = 5/331 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           VYR LI+      +      L+ EM  K+ P         I+   F   R V +  +++D
Sbjct: 404 VYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGR-VAEGKDIMD 462

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG 257
            M + G  P+   F  L++  C   +++EA  L D M     +P+   + +L+ G+CK G
Sbjct: 463 LMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNG 522

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ +A  V   M   G +P  V+YN +L G  Q  + T A ++  EM   G   +  +Y 
Sbjct: 523 RIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYG 582

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           V++  LCR    +EAN    ++     + D++T+  +IS   K  +     E+  ++   
Sbjct: 583 VVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTY 642

Query: 378 GILPNQLTYLHIMLAHEKKEE-LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           G++P   TY ++M+++  KEE  EE   L   + K G  PD    N ++R+  K  E+ +
Sbjct: 643 GLVPTVHTY-NLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAK 701

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           A N  + ++  +L+    +  ++   F  +G
Sbjct: 702 ASNYLSIIDENNLTLEASTISLLASLFSREG 732



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 297 AFELLKEMRRKGCD------PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
           A EL K M R  C       P   +Y +LI    RM + E A   F  + R+G   DV +
Sbjct: 100 AVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCS 159

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
           Y TLI GF K  ++D+ YE+   MI++ + P+ +TY  ++    K +E+ +   ++ +M 
Sbjct: 160 YNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMV 219

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
             G  P+   YN +I      G  KE+V V+ EM ++ L P   +    +H       + 
Sbjct: 220 DAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIK 279

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EA + F  MV +G    P   +   LL+             + + +V+KG   N   + I
Sbjct: 280 EAKDIFDSMVLKG--PKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNI 337

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            I++    G + +A     DM +  ++P   TFA ++  L ++
Sbjct: 338 LINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 380


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 178/360 (49%), Gaps = 4/360 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV-KEAAKLFDEM 235
           +  L+  F+ A   + A+ V   M   G +P    +  +L    K +   K+   L D M
Sbjct: 181 YTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVDSM 240

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLV-EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           +    P  R+  + L   C+ G L  EA  V  +M+ AGFEPD V +N+LL  Y +    
Sbjct: 241 KNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMH 300

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A  +LKEM   GC P+  +Y  LI +  +   ++EA     EME  G + DV+TYTTL
Sbjct: 301 DEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTL 360

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           ISG  ++ KID      D M++ G  PN  TY  ++  H  + +  E + +  ++R  G 
Sbjct: 361 ISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGF 420

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           VPDV  +N ++ +  + G   E   V+ EM+ +   P  D++V ++  +   G   ++ E
Sbjct: 421 VPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSME 480

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
            +K M+  G+   P   T  A+L++L R  + E A+ +++ +    C  +  +++  +H+
Sbjct: 481 IYKRMIEAGIY--PDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHA 538



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 151/310 (48%), Gaps = 6/310 (1%)

Query: 157 VWALMEEMRKEKPQL--ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           V AL++ M+ +   L   T    +   RR A   + K+A +V DEM   G EPD+  F  
Sbjct: 233 VVALVDSMKNDGIPLDRYTYNTLISCCRRGA---LYKEAAKVFDEMRAAGFEPDKVTFNS 289

Query: 215 LLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LLD   K     EA  +  EM      PS+  + SL+  + K+G L EA  +  +M+  G
Sbjct: 290 LLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKG 349

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
            +PD++ Y  L+SG  + GK+  A     EM R GC PN  +Y  LI+      K  E  
Sbjct: 350 IQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMM 409

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F ++  +G   DVVT+ TL++ F ++        +   M + G +P + TY+ ++ ++
Sbjct: 410 AVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSY 469

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            +    ++ +E+   M + G  PD+S YN V+    + G  ++A  ++ EME     P  
Sbjct: 470 SRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDE 529

Query: 454 DSFVVMVHGF 463
            S+  ++H +
Sbjct: 530 LSYSSLLHAY 539



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 198/450 (44%), Gaps = 43/450 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +LI S  K         L EEM  +  +P +IT   +  L+     A  +  AI   
Sbjct: 321 TYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVIT---YTTLISGLDRAGKIDAAIGTY 377

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           DEM + GC+P+   +  L+          E   +FD++R   F P +  + +LL  + + 
Sbjct: 378 DEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQN 437

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G   E   V  +MK +G+ P+   Y +L+S Y++ G    + E+ K M   G  P+ ++Y
Sbjct: 438 GLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTY 497

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             ++ AL R  + E+A + F EME   C  D ++Y++L+  +  ++K+D+   + + +  
Sbjct: 498 NAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYA 557

Query: 377 RGILPNQLTYLHIMLAHEKKEELEEC----------------------VELMGEMRKIGC 414
             I  +      ++L + K   L E                       V + G+ R +  
Sbjct: 558 EKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKK 617

Query: 415 VPDV-------------SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
           V ++             + YN ++ +  +LG+ ++  N+  E++++   P   S+  M++
Sbjct: 618 VEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIY 677

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            +  +G + EA   F EM   GL+  P   T    + S +     E A D+   +VT+GC
Sbjct: 678 AYGRKGQMKEASRLFSEMKSSGLI--PDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGC 735

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           + N   +   +     +G + +A S+  ++
Sbjct: 736 KPNERTYNSILQEYCRHGKIADAKSFLSNL 765



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 183/422 (43%), Gaps = 47/422 (11%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+ +     Y  LI  L +  K  A     +EM +   KP L T   +  L++      
Sbjct: 351 QPDVI----TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCT---YNALIKLHGVRG 403

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
              + + V D++   G  PD   +  LL    +N    E + +F EM++  + P    + 
Sbjct: 404 KFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYV 463

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SL+  + + G   ++  +  +M +AG  PDI  YN +LS  A+ G+   A +L  EM   
Sbjct: 464 SLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENL 523

Query: 308 GCDPNANSYTVLIQALCRMEKME-----------------------------------EA 332
            C P+  SY+ L+ A    +K++                                   E 
Sbjct: 524 DCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSET 583

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            +AF+E+ R  C  D+     ++S + K+R + +  EIL  M    I  +  TY  +M  
Sbjct: 584 EKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHM 643

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           + +  + E+C  ++ E++  G  PD  +YN +I    + G++KEA  +++EM+++ L P 
Sbjct: 644 YSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPD 703

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++ + V  ++      EA +  + MV RG    P   T  ++L    R  K+  AK  
Sbjct: 704 IVTYNIFVKSYVANSMFEEAIDLVRYMVTRG--CKPNERTYNSILQEYCRHGKIADAKSF 761

Query: 513 WS 514
            S
Sbjct: 762 LS 763



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 3/259 (1%)

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK-SRKIDRCY 368
           +P+A++YT L+ A  R  +  +A   F  M  +G +  +VTY  ++  + K +       
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            ++DSM   GI  ++ TY  ++    +    +E  ++  EMR  G  PD   +N ++ + 
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K     EA+ V  EME     P   ++  ++  ++  G L EA E  +EM  +G+   P
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGI--QP 352

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T   L++ L RA K++ A   +  ++  GC+ N+  +   I      G   E  +  
Sbjct: 353 DVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVF 412

Query: 549 LDMMDADVMPQPDTFAKLM 567
            D+  A  +P   T+  L+
Sbjct: 413 DDLRSAGFVPDVVTWNTLL 431



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 41/299 (13%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASA 187
           K+  YV   D Y +LI S S+   F     + + M +    P + T   +  ++   A  
Sbjct: 451 KKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDIST---YNAVLSALARG 507

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC--------------------------- 220
              ++A ++  EM    C PDE  +  LL A                             
Sbjct: 508 GRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLV 567

Query: 221 --------KNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
                   K +++ E  K F E+ R R    +    +++  + K   + + + +L  MK 
Sbjct: 568 KTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKG 627

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
           +        YN+L+  Y+++G       +L E++  G  P+  SY  +I A  R  +M+E
Sbjct: 628 SSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKE 687

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           A+R F EM+ SG   D+VTY   +  +  +   +   +++  M+ RG  PN+ TY  I+
Sbjct: 688 ASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSIL 746


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 175/329 (53%), Gaps = 15/329 (4%)

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR- 236
           V L     S  +    ++   E    G   DE ++  ++DALCK   V+EA +L +EM+ 
Sbjct: 352 VALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKG 411

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
            R    + H+T+L+ G+C +GKLV+AK +  +MK+ G EPDIV YN L+ G+++ G   +
Sbjct: 412 RRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKE 471

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A ELL  +  +G  PN+ ++  +I+ LC   K++EA  AF+      C   +  Y+ ++ 
Sbjct: 472 ALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEA-EAFLNTLEDKC---LENYSAMVD 527

Query: 357 GFCKSRKIDRCYEILDSMIQRGIL--------PNQLTYLHIMLAHEKKEELEECVELMGE 408
           G+CK+    + YE+   + ++GIL        PNQ+ Y  ++ A  +  +++    +   
Sbjct: 528 GYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDM 587

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           + + G  PDV  Y ++I   C++  L+EA +++N+M+   + P   ++ V++ G      
Sbjct: 588 LVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNN 647

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           L +A   + EM+ RGL   P   T  ALL
Sbjct: 648 LQDAINLYDEMIARGL--QPDIVTYTALL 674



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 221/507 (43%), Gaps = 67/507 (13%)

Query: 140 VYRALIKSLSKMRKFG-AVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           V   L+K+  ++  F  A+ AL +  R+   P +++      LM R      +  A+ + 
Sbjct: 159 VLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCN---FLMNRLIEHGKIDMAVAIY 215

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKP--------------- 241
             + + G  P+++ +G  + ALC+  + +EA  +F EM E    P               
Sbjct: 216 RHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSH 275

Query: 242 -----------SLRH---------FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
                      +LR          +T+++ G+C E KL EA+ V + M + G  PD  +Y
Sbjct: 276 KRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIY 335

Query: 282 NNLLSGYAQMGKMTDAFEL----------------LKEMRRKGCDPNANSYTVLIQALCR 325
             L+  Y + G +  A  L                 KE R  G   +   Y +++ ALC+
Sbjct: 336 GALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCK 395

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
           + K+EEA     EM+      DVV YTTLI+G+C   K+     + + M +RGI P+ +T
Sbjct: 396 LGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVT 455

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           Y  ++    +    +E +EL+  +   G  P+ + +N +I   C  G++KEA    N +E
Sbjct: 456 YNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLE 515

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA------PQYGTLKALLNS 499
              L    +++  MV G+       +A E F  +  +G+L        P       L+ +
Sbjct: 516 DKCL----ENYSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGA 571

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             R   ++ A+ V+  +V +G   +V  +T+ I+       ++EA     DM +  + P 
Sbjct: 572 FCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPD 631

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKV 586
             T+  ++ G  K  N Q A  + +++
Sbjct: 632 VITYTVVLDGHSKTNNLQDAINLYDEM 658



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 189/449 (42%), Gaps = 36/449 (8%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLI---TTE 175
           NL + ++    K+  + H+ D Y ALI+ L + R    + +L+ E+   K  ++    T 
Sbjct: 78  NLAWSFFT-QLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITA 136

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK-LFDE 234
           +F +L            ++ +L             V   L+ A  +     EA   LF  
Sbjct: 137 LFDVLREGGGEVEGEHSSVLIL-------------VLDMLVKAYVRVGMFDEAIDALFQT 183

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            R  F P +     L+    + GK+  A  +   +K  G  P+   Y   +    + G  
Sbjct: 184 KRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNF 243

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A ++ +EM   G +PNA + +  I+ LC  ++ +    A   +  +    D   YT +
Sbjct: 244 EEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAV 303

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM----- 409
           I GFC   K+    ++   M+  GI P+   Y  ++ A+ K   L + V L  +M     
Sbjct: 304 IRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGI 363

Query: 410 -----------RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
                      R  G   D   YN+V+   CKLG+++EAV + NEM+   +S     +  
Sbjct: 364 KTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTT 423

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G+  QG L++A   F+EM  RG+   P   T   L+    R    + A ++  CI T
Sbjct: 424 LIAGYCLQGKLVDAKNMFEEMKERGI--EPDIVTYNILVGGFSRNGLKKEALELLDCIGT 481

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           +G + N       I  L   G VKEA ++
Sbjct: 482 QGLKPNSATHNRIIEGLCMAGKVKEAEAF 510



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 143/313 (45%), Gaps = 15/313 (4%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  ++ +L K+ K      L+ EM+  +  L       ++       ++V  A  + +E
Sbjct: 385 LYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVD-AKNMFEE 443

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + G EPD   +  L+    +N   KEA +L D +  +  KP+      ++ G C  GK
Sbjct: 444 MKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGK 503

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--------CD 310
           + EA+  L  ++D   E     Y+ ++ GY +      A+EL   + ++G         +
Sbjct: 504 VKEAEAFLNTLEDKCLEN----YSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVE 559

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN   Y  LI A CR   M+ A   F  +   G   DV+TYT +I+G+C+   +    +I
Sbjct: 560 PNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDI 619

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + M +RGI P+ +TY  ++  H K   L++ + L  EM   G  PD+  Y  ++   C 
Sbjct: 620 FNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTALLPGKCN 679

Query: 431 LGELKEAVNVWNE 443
            G  +   N W E
Sbjct: 680 FGS-RHFDNQWLE 691


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 146/297 (49%), Gaps = 1/297 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + I+++    A  + +AI++ D+M K G +PD F F   L   C    V+E   L D+M+
Sbjct: 495 YNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMK 554

Query: 237 -ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            E  KP +  + +++ G+CK   + +A   L ++   G  P+ V+YN L+ GY + G ++
Sbjct: 555 SEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNIS 614

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA  +L  M+  G  P   +Y  L+  +C    +EE    F +      E  V+ YT +I
Sbjct: 615 DAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIII 674

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GFCK  KID        M  RGI PN++TY  +M A+ K    EE  +L  EM  +G V
Sbjct: 675 QGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIV 734

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           PD  +YN +I   C++  L + V    EM +  L     S+   V G     C  EA
Sbjct: 735 PDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGITTPWCQKEA 791



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 222/521 (42%), Gaps = 73/521 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEV---------------------- 176
           Y A+IK+L +  +  A +A++ E+R+   +P ++T  V                      
Sbjct: 214 YTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMV 273

Query: 177 ----------FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
                     F IL+   A  +   +   VL EM  +G  P+E ++  ++   C+     
Sbjct: 274 EGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCS 333

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL- 284
           EA KLFDEM  +  K ++  +  +    CKEG++  A+ +L +M  AG      ++N++ 
Sbjct: 334 EALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVV 393

Query: 285 ---LSGYAQM--------------------------------GKMTDAFELLKEMRRKGC 309
              L G  ++                                GK  +A E+  ++  KG 
Sbjct: 394 AWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGL 453

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
             N  +   LI  LC+   M+EA +    M  SG E D +TY  +I G CK+ K+D   +
Sbjct: 454 GVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQ 513

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D MI+RG  P+  T+   +  +    ++EE + L+ +M+  G  PD+  Y  +I   C
Sbjct: 514 LRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYC 573

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K  ++ +A     E+    L P    +  ++ G+   G + +A      M   G+   P 
Sbjct: 574 KAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPV 633

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T  +L+  +  A  VE  K V++  + K  EL V  +TI I      G + EA  Y  
Sbjct: 634 --TYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFK 691

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           +M    + P   T+  LM    K  N++ A+++ +++  + 
Sbjct: 692 EMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLG 732



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 170/362 (46%), Gaps = 9/362 (2%)

Query: 215 LLDALCKNS----SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
           LL   C NS    S+  AA  F E+  R   PS++  + L+      G+L  A+ V  +M
Sbjct: 142 LLVRACLNSPAPGSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEM 201

Query: 270 KDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           +D     PD+  Y  ++    + G++  AF +L E+RR G  P   +Y VL+ ALC+  +
Sbjct: 202 RDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGR 261

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
           +EEA R    M        +VT+  LISG  + ++      +L  M   GI PN++ Y  
Sbjct: 262 VEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNE 321

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
           ++  H +K    E ++L  EM   G    V  YN++ +  CK GE++ A  + +EM  A 
Sbjct: 322 MIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAG 381

Query: 449 LSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
           +      F  +V   L G G L       +EM+ R L   P    + A +  L ++ K E
Sbjct: 382 MMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFL--KPNDALMTACIQELCKSGKHE 439

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A ++W  ++ KG  +NV      IH L    ++KEA      M+++ V     T+  ++
Sbjct: 440 EAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMI 499

Query: 568 RG 569
           +G
Sbjct: 500 QG 501



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 140/288 (48%), Gaps = 16/288 (5%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           L+  LC+ +++KEA K+   M        R  +  ++ G CK  K+ EA  +   M   G
Sbjct: 463 LIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRG 522

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           F+PD+  +N  L  Y  +GK+ +   LL +M+ +G  P+  +Y  +I   C+ + M +AN
Sbjct: 523 FKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKAN 582

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM--- 390
               E+ ++G   + V Y  LI G+ ++  I     ILD+M   GI P  +TY  +M   
Sbjct: 583 EYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWM 642

Query: 391 ----LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
               L  E K    +C+    E+  IG       Y ++I+  CK+G++ EAV  + EM +
Sbjct: 643 CHAGLVEEVKAVFAQCIVKDIELGVIG-------YTIIIQGFCKIGKIDEAVMYFKEMHS 695

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTL 493
             + P   ++  ++  +   G   EA + F EMV  G++  +  Y TL
Sbjct: 696 RGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTL 743



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/461 (22%), Positives = 194/461 (42%), Gaps = 39/461 (8%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203
           L+++L    +      +  EMR  K        +  +++    A  +  A  +L E+ + 
Sbjct: 181 LVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRS 240

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEA 262
           G +P    +  L+DALCK+  V+EA +L   M E R +PS+  F  L+ G  +  +  E 
Sbjct: 241 GIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEV 300

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             VL +M+  G  P+ V+YN ++  + + G  ++A +L  EM  KG      +Y ++ +A
Sbjct: 301 GAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKA 360

Query: 323 LCRMEKMEEANRAFVEMERSG----CEA--DVVTY------------------------- 351
           LC+  +ME A +   EM  +G    C     VV +                         
Sbjct: 361 LCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKP 420

Query: 352 -----TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
                T  I   CKS K +   EI   ++ +G+  N  T   ++    +   ++E  +++
Sbjct: 421 NDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVL 480

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
             M   G   D   YN++I+  CK  ++ EA+ + ++M      P   +F + +H +   
Sbjct: 481 KAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNL 540

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G + E      +M   GL   P   T   +++   +A+ +  A +  + ++  G   N  
Sbjct: 541 GKVEEILHLLDQMKSEGL--KPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAV 598

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            +   I     NG++ +A      M    + P P T+  LM
Sbjct: 599 IYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLM 639



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 164/377 (43%), Gaps = 5/377 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFT 247
           + +A +   E+   G  P       L++AL     +  A K+F EMR+     P +  +T
Sbjct: 156 LSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYT 215

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++   C+ G++  A  +L +++ +G +P +V YN L+    + G++ +AF L   M   
Sbjct: 216 AMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEG 275

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              P+  ++ +LI  L R ++  E      EM+  G   + V Y  +I   C+       
Sbjct: 276 RVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEA 335

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++ D M+ +GI    +TY  I  A  K+ E+E   +++ EM   G +   S +N V+  
Sbjct: 336 LKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAW 395

Query: 428 ACK-LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             +  G L   + +  EM A  L P        +      G   EA E + +++G+GL  
Sbjct: 396 HLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGL-- 453

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
                T  AL++ L +   ++ A  V   +V  G EL+   + I I        + EA  
Sbjct: 454 GVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQ 513

Query: 547 YCLDMMDADVMPQPDTF 563
              DM+     P   TF
Sbjct: 514 LRDDMIKRGFKPDLFTF 530


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 193/397 (48%), Gaps = 11/397 (2%)

Query: 160 LMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           + E MR    KP L       +L+   A AR+     +V  +M + G  P+  +F  L+ 
Sbjct: 149 VFEHMRVHGFKPHL---HACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 218 ALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           A CK+  V++A +L +EM  RF  P L  + +L+  +CK+G   EA  +  +M+  G  P
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 265

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           DIV YN+L+ G+ + G+M +A  L +E+   G  PN  +YT LI   CR+  +EEA R  
Sbjct: 266 DIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLR 323

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             ME  G    VVTY +++   C+  KI     +L+ M +R + P+ +T   ++ A+ K 
Sbjct: 324 EVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 383

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            ++   +++  +M + G  PD   +  +I   CKL E+  A     EM  A  SP   ++
Sbjct: 384 GDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTY 443

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +V  +  Q           E+  +GL         +AL+  L +  K+E A+ +++ +
Sbjct: 444 SWLVDSYYDQDNKEAVIRLPDELSRKGLFV--DISVYRALIRRLCKIDKIESAERIFTLM 501

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             KG + +   +T   ++ F  G    A S  LD MD
Sbjct: 502 QGKGMKGDSVVYTSLAYAYFKAGKAI-AASDMLDEMD 537



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 171/377 (45%), Gaps = 35/377 (9%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            L+ SL+K R    VW + ++M +    +    +F +L+     +  V+KA ++L+EM  
Sbjct: 167 VLLNSLAKARLTNMVWKVYKKMVRVGV-VPNIHIFNVLIHACCKSGDVEKAEQLLNEMES 225

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVE 261
               PD F +  L+   CK     EA  + D M R    P +  + SL+YG+C+EG++ E
Sbjct: 226 RFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMRE 285

Query: 262 AKYVLVQMKDA---------------------------------GFEPDIVVYNNLLSGY 288
           A  +  ++  A                                 G  P +V YN++L   
Sbjct: 286 ALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            + GK+ DA  LL EM  +  +P+  +   LI A C++  M  A +   +M  +G + D 
Sbjct: 346 CEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            T+  LI GFCK  ++D   E L  M+  G  P+  TY  ++ ++  ++  E  + L  E
Sbjct: 406 FTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDE 465

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           + + G   D+S Y  +IR  CK+ +++ A  ++  M+   +   +  +  + + +   G 
Sbjct: 466 LSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGK 525

Query: 469 LIEACEYFKEMVGRGLL 485
            I A +   EM  R L+
Sbjct: 526 AIAASDMLDEMDKRRLM 542



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/483 (20%), Positives = 197/483 (40%), Gaps = 57/483 (11%)

Query: 106 LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR 165
           L + ++N   D   + + ++ W     N+ HS      +I +L+K ++F     L+E   
Sbjct: 43  LNQVLLNLSLDGCCVSWAFFKWVESNLNHKHSLQSSWTMIHTLAKHKQFKTAQNLLER-- 100

Query: 166 KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
                        I +R + S+  V  A+  + + P    + +  +   L+     +   
Sbjct: 101 -------------IAVRDYLSSPSVLNAVVRIHDDP----DSNSQILSWLVIFYANSRMT 143

Query: 226 KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           ++A ++F+ MR                                    GF+P +     LL
Sbjct: 144 QDAIQVFEHMRVH----------------------------------GFKPHLHACTVLL 169

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           +  A+       +++ K+M R G  PN + + VLI A C+   +E+A +   EME     
Sbjct: 170 NSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIF 229

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            D+ TY TLIS +CK         I D M + G+ P+ +TY  ++    ++  + E + L
Sbjct: 230 PDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRL 289

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             E+   G  P+   Y  +I   C++ +L+EA+ +   ME   L PG  ++  ++     
Sbjct: 290 FREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCE 347

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           +G + +A     EM  R +   P   T   L+N+  +   +  A  V   ++  G + + 
Sbjct: 348 EGKIKDANRLLNEMSERKV--EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
           + +   IH       V  A  +  +M+DA   P   T++ L+       N++    + ++
Sbjct: 406 FTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDE 465

Query: 586 VRK 588
           + +
Sbjct: 466 LSR 468



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 11/304 (3%)

Query: 300 LLKEMRRKGCDPNANS----YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +L  + R   DP++NS    + V+  A  RM   ++A + F  M   G +  +   T L+
Sbjct: 112 VLNAVVRIHDDPDSNSQILSWLVIFYANSRMT--QDAIQVFEHMRVHGFKPHLHACTVLL 169

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +   K+R  +  +++   M++ G++PN   +  ++ A  K  ++E+  +L+ EM      
Sbjct: 170 NSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIF 229

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD+  YN +I L CK G   EA+ + + ME   +SP   ++  +++GF  +G + EA   
Sbjct: 230 PDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRL 289

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F+E+ G    + P + T   L++   R   +E A  +   +  +G    V  +   +  L
Sbjct: 290 FREING----ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE-RQ 594
              G +K+A     +M +  V P   T   L+    K+ +   A ++ +K+ +   +  Q
Sbjct: 346 CEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 595 ITFK 598
            TFK
Sbjct: 406 FTFK 409


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 221/474 (46%), Gaps = 42/474 (8%)

Query: 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            L + R+F A++  M    +  P   TT  F +  R         +A+ +L  M ++GC 
Sbjct: 136 GLPRARRF-ALYRRMVHRDRVPP---TTFTFGVAARALCRLGRADEALALLRGMARHGCV 191

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           PD  ++  ++ ALC    V EAA L +EM        +  F  ++ G C  G++ EA  +
Sbjct: 192 PDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARL 251

Query: 266 LVQMKDAGFEP-------------------------------DIVVYNNLLSGYAQMGKM 294
           + +M   G  P                               ++V++N ++ G    GK+
Sbjct: 252 VDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKL 311

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +A EL + M  KGC P+A++Y++L+  LC++ ++  A R   EME+ G   +VVTYT +
Sbjct: 312 AEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIV 371

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           +  FCK+   D    +L+ M  +G+  N   Y  ++ A  K   ++E + L+ EMR  GC
Sbjct: 372 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 431

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVW-NEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
            PD+ +YN +I   C   +++EA +++ N +E   ++ G  ++  ++H  L  G   +A 
Sbjct: 432 NPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI-TYNTIIHALLRDGRWQDAV 490

Query: 474 EYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              KEM+  G  L    Y     L+ ++ +   V+ +  +   +  KG + N  ++ I I
Sbjct: 491 RLAKEMILHGCSLDVVSY---NGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILI 547

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             L     V++A      M++  + P   T+  L+ GL K+     A  + EK+
Sbjct: 548 SELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKL 601



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 169/357 (47%), Gaps = 41/357 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  L++ L ++R+     A++  +    P+L       ++    A  ++ + A E+ + 
Sbjct: 266 TYGFLLQGLCRVRQADEARAMLGRV----PELNVVLFNTVIGGCLAEGKLAE-ATELYET 320

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   GC+PD   +  L+  LCK   +  A +L  EM ++ F P++  +T +L+ +CK G 
Sbjct: 321 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 380

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             + + +L +M   G   +   YN ++    + G+M +A  L++EMR +GC+P+  SY  
Sbjct: 381 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 440

Query: 319 LIQALCRMEKMEEANRAF-----------------------------------VEMERSG 343
           +I  LC  E+MEEA   F                                    EM   G
Sbjct: 441 IIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG 500

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
           C  DVV+Y  LI   CK   +DR   +L+ M ++GI PN ++Y  ++    K+  + + +
Sbjct: 501 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 560

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           EL  +M   G  PD+  YN +I   CK+G +  A+N+  ++   ++ P   ++ +++
Sbjct: 561 ELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 617



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 176/375 (46%), Gaps = 34/375 (9%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK---------------------------- 221
           V++A  ++D M   GC P    +G LL  LC+                            
Sbjct: 245 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 304

Query: 222 ---NSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
                 + EA +L++ M  +  +P    ++ L++G CK G++  A  +L +M+  GF P+
Sbjct: 305 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 364

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V Y  +L  + + G   D   LL+EM  KG   N+  Y  +I ALC+  +M+EA     
Sbjct: 365 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 424

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM   GC  D+ +Y T+I   C + +++    + +++++ G++ N +TY  I+ A  +  
Sbjct: 425 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 484

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
             ++ V L  EM   GC  DV +YN +I+  CK G +  ++ +  EM    + P   S+ 
Sbjct: 485 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 544

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +++     +  + +A E  K+M+ +GL  AP   T   L+N L +   +  A ++   + 
Sbjct: 545 ILISELCKERRVRDALELSKQMLNQGL--APDIVTYNTLINGLCKMGWMHAALNLLEKLH 602

Query: 518 TKGCELNVYAWTIWI 532
            +    ++  + I I
Sbjct: 603 NENVHPDIITYNILI 617



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 157/320 (49%), Gaps = 10/320 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QP+  H+Y +   L+  L K+ + G+   L+ EM K+   P ++T   + I++  F    
Sbjct: 327 QPD-AHTYSI---LMHGLCKLGRIGSAVRLLREMEKKGFAPNVVT---YTIVLHSFCKNG 379

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
           M      +L+EM   G   +   +  ++ ALCK+  + EA  L  EMR +   P +  + 
Sbjct: 380 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 439

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++Y  C   ++ EA+++   + + G   + + YN ++    + G+  DA  L KEM   
Sbjct: 440 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 499

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC  +  SY  LI+A+C+   ++ +     EM   G + + V+Y  LIS  CK R++   
Sbjct: 500 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 559

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            E+   M+ +G+ P+ +TY  ++    K   +   + L+ ++      PD+  YN++I  
Sbjct: 560 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 619

Query: 428 ACKLGELKEAVNVWNEMEAA 447
            CK+  L +A  + N   AA
Sbjct: 620 HCKVRLLDDAAMLLNRAMAA 639


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 211/457 (46%), Gaps = 43/457 (9%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           Y      +  LIK L    K      L++ M +   +P ++T    V  + R     +  
Sbjct: 144 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSL-- 201

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+++L +M +   + D F +  ++D+LC++  +  A  LF EM  +  K S+  + SL+
Sbjct: 202 -ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 260

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK GK  +   +L  M      P+++ +N LL  + + GK+ +A EL KEM  +G  
Sbjct: 261 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 320

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  L+   C   ++ EAN     M R+ C  D+VT+T+LI G+C  +++D   ++
Sbjct: 321 PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKV 380

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             ++ +RG++ N +TY  ++    +  +++   EL  EM   G +PDV  Y +++   C 
Sbjct: 381 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 440

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+L++A+ ++ +++ + +  G   +  ++ G    G                       
Sbjct: 441 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG----------------------- 477

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                         KVE A +++  +  KG + NV  +T+ I  L   G + EA      
Sbjct: 478 --------------KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRK 523

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           M +    P   T+  L+R   +  +   +A++ E+++
Sbjct: 524 MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 560



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 198/390 (50%), Gaps = 10/390 (2%)

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD---EMPKYGCEPDEFVFGCL 215
           AL +EM + +P        V   R F++    K+   VLD   ++   G   + +    +
Sbjct: 64  ALFQEMIRSRP----LPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 119

Query: 216 LDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  C+      A  +  + M+  ++P    F +L+ G   EGK+ EA  ++ +M + G 
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +PD+V YN++++G  + G  + A +LL++M  +    +  +Y+ +I +LCR   ++ A  
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F EME  G ++ VVTY +L+ G CK+ K +    +L  M+ R I+PN +T+  ++    
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 299

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+ +L+E  EL  EM   G  P++  YN ++   C    L EA N+ + M     SP   
Sbjct: 300 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 359

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           +F  ++ G+     + +  + F+ +  RGL++     T   L+    ++ K+++A++++ 
Sbjct: 360 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV--TYSILVQGFCQSGKIKLAEELFQ 417

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +V+ G   +V  + I +  L  NG +++A
Sbjct: 418 EMVSHGVLPDVMTYGILLDGLCDNGKLEKA 447



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 166/328 (50%), Gaps = 6/328 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +L++ L K  K+     L+++M  R+  P +IT   F +L+  F     +++A E+ 
Sbjct: 255 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT---FNVLLDVFVKEGKLQEANELY 311

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
            EM   G  P+   +  L+D  C  + + EA  + D M R +  P +  FTSL+ G+C  
Sbjct: 312 KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMV 371

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ +   V   +   G   + V Y+ L+ G+ Q GK+  A EL +EM   G  P+  +Y
Sbjct: 372 KRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTY 431

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            +L+  LC   K+E+A   F ++++S  +  +V YTT+I G CK  K++  + +  S+  
Sbjct: 432 GILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 491

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           +G+ PN +TY  ++    KK  L E   L+ +M + G  P+   YN +IR   + G+L  
Sbjct: 492 KGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTA 551

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           +  +  EM++   S    S  +++   L
Sbjct: 552 SAKLIEEMKSCGFSADASSIKMVIDMLL 579



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 176/369 (47%), Gaps = 8/369 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  +I SL +     A  +L +EM  +  K  ++T   +  L+R    A        +L
Sbjct: 220 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT---YNSLVRGLCKAGKWNDGALLL 276

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            +M      P+   F  LLD   K   ++EA +L+ EM  R   P++  + +L+ G+C +
Sbjct: 277 KDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQ 336

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +L EA  +L  M      PDIV + +L+ GY  + ++ D  ++ + + ++G   NA +Y
Sbjct: 337 NRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTY 396

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           ++L+Q  C+  K++ A   F EM   G   DV+TY  L+ G C + K+++  EI + + +
Sbjct: 397 SILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK 456

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
             +    + Y  I+    K  ++E+   L   +   G  P+V  Y V+I   CK G L E
Sbjct: 457 SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 516

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A  +  +ME    +P   ++  ++   L  G L  + +  +EM   G   +    ++K +
Sbjct: 517 ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF--SADASSIKMV 574

Query: 497 LNSLLRAQK 505
           ++ LL A K
Sbjct: 575 IDMLLSAMK 583



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 3/286 (1%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG   + K  DA  L +EM R    P+   ++    A+ R ++         ++E +G
Sbjct: 50  LRSGIVDI-KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNG 108

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++ T   +I+ FC+  K    Y +L  +++ G  P+  T+  ++     + ++ E V
Sbjct: 109 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAV 168

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L+  M + GC PDV  YN ++   C+ G+   A+++  +ME  ++     ++  ++   
Sbjct: 169 VLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 228

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              GC+  A   FKEM  +G+ S+    T  +L+  L +A K      +   +V++    
Sbjct: 229 CRDGCIDAAISLFKEMETKGIKSS--VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP 286

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           NV  + + +      G ++EA     +M+   + P   T+  LM G
Sbjct: 287 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 332



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM + G   + +TY++LI GFCK  ++D   ++LD M+ +G   + + YL   L  +K++
Sbjct: 724 EMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG--DSDIRYLLAGLMRKKRK 781

Query: 398 ELE 400
             E
Sbjct: 782 GSE 784


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 196/393 (49%), Gaps = 10/393 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L KM   G   A ++ +R+ + +L+ T V  +  ++      ++V  A  +  
Sbjct: 161 YGILINGLCKM---GQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYS 217

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM      P    F  L+   C     K+A +LF+EM  +   P    F  L+   CKEG
Sbjct: 218 EMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEG 277

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EAK V+  M   G EP +V YN L+ GY  + ++  A  +L  + R    PN+ SY 
Sbjct: 278 KIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYN 337

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++ ++EA   F EM   G     VTY +LI G CK+ +I   +E++D M   
Sbjct: 338 IMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN 397

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I  + +TY  ++    K + +++ + L+ ++++ G  P++  YN++I   CK G+LK A
Sbjct: 398 CIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNA 457

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +V+ ++     +    ++ +M++G   +G   EA     +M   G++  P   T + ++
Sbjct: 458 QDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGII--PDAVTYETII 515

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            +L    + E A+ +   +V KG  + VYA+ I
Sbjct: 516 QALFHKDENEKAQKLLREMVIKG--VVVYAFEI 546



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 174/374 (46%), Gaps = 15/374 (4%)

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
           +M   G +PD F    L++  C    +  A  +F ++             L  G C  GK
Sbjct: 92  QMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKI-------------LKMGLCLNGK 138

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA      +   GF  + V Y  L++G  +MG+   A ++L+++  K  + N   Y+ 
Sbjct: 139 VNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYST 198

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I  LC+ + + +A   + EM        VVT+++LI GFC   K    + + + M+ + 
Sbjct: 199 IIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKN 258

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P+  T+  ++ A  K+ +++E   ++  M K G  P V  YN ++   C + E+ +A 
Sbjct: 259 INPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAK 318

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           +V + +    ++P + S+ +M++GF     + EA   F EM  RG+  AP   T  +L++
Sbjct: 319 HVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGI--APHKVTYNSLID 376

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +A ++  A ++   +       ++  +   I     N HV +A +    + +  + P
Sbjct: 377 GLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQP 436

Query: 559 QPDTFAKLMRGLKK 572
              T+  L+ GL K
Sbjct: 437 NMCTYNILIDGLCK 450



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 128/319 (40%), Gaps = 24/319 (7%)

Query: 276 PDIVVYNNLLSGYAQM-GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           P IV +N +L+   +          L  +M  KG  P+  + ++LI   C + +M  A  
Sbjct: 64  PSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFS 123

Query: 335 AFVEMERSGC---------------------EADVVTYTTLISGFCKSRKIDRCYEILDS 373
            F ++ + G                        + VTY  LI+G CK  +     ++L  
Sbjct: 124 VFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQ 183

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           +  + +  N + Y  I+    K + + +   L  EM      P V  ++ +I   C +G+
Sbjct: 184 IEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGK 243

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            K+A  ++NEM   +++P   +F ++V     +G + EA      M+  G+   P   T 
Sbjct: 244 FKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGV--EPTVVTY 301

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L++      +V  AK V S I       N  ++ I I+       V EA     +M  
Sbjct: 302 NTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCC 361

Query: 554 ADVMPQPDTFAKLMRGLKK 572
             + P   T+  L+ GL K
Sbjct: 362 RGIAPHKVTYNSLIDGLCK 380


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 188/361 (52%), Gaps = 4/361 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +++  G V  ++  M K       T  + +L+  ++ +  +++A ++ DEM
Sbjct: 230 YNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVT-TYTMLIEWYSRSSKIEEAEKLFDEM 288

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K G EPD +++  +++  CK  ++K A  LFDEM ER   P+   + +L+ G CK G++
Sbjct: 289 LKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEM 348

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A+ ++  M+  G + + V++N L+ GY + G + +A  L   M++KG + +A +  ++
Sbjct: 349 KAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNII 408

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
               CR  + EEA R  + ME  G   +VV+++ LI  +CK +       +   M ++G 
Sbjct: 409 ASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGK 468

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY   +  + KK ++EE  +L+ EM++ G +PD   Y  +I      G +  A+ 
Sbjct: 469 APSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALE 528

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++NEM    L+    ++ V++ G    G   EA + + EM   G++  P  G   +L+ S
Sbjct: 529 LFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIV--PDDGIYSSLIAS 586

Query: 500 L 500
           L
Sbjct: 587 L 587



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 200/436 (45%), Gaps = 43/436 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + A++  L K  +     ALM+E+  +  KP +IT   +  L+  +   + V    E+L 
Sbjct: 195 WTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVIT---YNTLLNGYIEIKDVGGVNEILS 251

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M K   + +   +  L++   ++S ++EA KLFDEM ++  +P +  +TS++   CK G
Sbjct: 252 LMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFG 311

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +  +M +    P+   Y  L++G  + G+M  A  ++ +M+ KG D N   + 
Sbjct: 312 NMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFN 371

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C+   ++EA R    M++ G E D  T   + SGFC+S + +    +L +M +R
Sbjct: 372 TLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEER 431

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +++  ++  + K++   E   L   M K G  P V  YN  I   CK G+++EA
Sbjct: 432 GVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEA 491

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + NEM+   L P T ++  ++ G    G +  A E F EM        PQ G     L
Sbjct: 492 YKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM--------PQLG-----L 538

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N                         NV  +T+ I  L  +G   EA     +M    ++
Sbjct: 539 NR------------------------NVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIV 574

Query: 558 PQPDTFAKLMRGLKKL 573
           P    ++ L+  L K+
Sbjct: 575 PDDGIYSSLIASLHKV 590



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/528 (23%), Positives = 224/528 (42%), Gaps = 91/528 (17%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKF-------------GAVWALMEEMRK--- 166
           R++ +  + P+       +  L   L + RKF             G +W+ +E +     
Sbjct: 53  RFFDFLRQNPSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVERIVSSIG 112

Query: 167 ---EKPQLITTEVFV-ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
               +P ++  E F  +L R +   RM   ++EV D   K G E DE      L AL ++
Sbjct: 113 GEFNEPSIV--EKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRS 170

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            +++   +   +M +   +  +  +T+++ G CK+G++V AK ++ ++   GF+P ++ Y
Sbjct: 171 GNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITY 230

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N LL+GY ++  +    E+L  M +   D N  +YT+LI+   R  K+EEA + F EM +
Sbjct: 231 NTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLK 290

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G E DV  YT++I+  CK   + R + + D M +R ++PN  T                
Sbjct: 291 KGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYT---------------- 334

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                              Y  +I  ACK GE+K A  + N+M++  +      F  ++ 
Sbjct: 335 -------------------YGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMD 375

Query: 462 GFLGQGCLIEA------------------CEYF---------KEMVGRGLLS------AP 488
           G+  +G + EA                  C            +E   R LL+      AP
Sbjct: 376 GYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 435

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              +   L++   + Q    A+ ++  +  KG   +V  +  +I      G ++EA    
Sbjct: 436 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 495

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
            +M +  +MP   T+  L+ G +   N   A E+  ++ ++   R + 
Sbjct: 496 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 543


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 222/490 (45%), Gaps = 40/490 (8%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
           N  + Y+   S+  N+VH+ D    +++ L + R+   +  + + M+K K        ++
Sbjct: 112 NSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQK-KVIYRNLTTYM 170

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
            + +  +    + +A   L +M + G   + + +  L+  L       EA K++  M  E
Sbjct: 171 TIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLP-GFCNEALKVYKRMISE 229

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             KPS++ +++L+    + G   +   +L +MK  G  P+I  Y   +    +  ++ DA
Sbjct: 230 GMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDA 289

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV-------------------- 337
           + + KEM  +GC P+  +YTVLI ALC   K+++A   +V                    
Sbjct: 290 WGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDK 349

Query: 338 ---------------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
                          EME  G   DVVTYT LI   CKS  +DR +++LD M  +GI PN
Sbjct: 350 FGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPN 409

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
             TY  ++    K   L+E +EL+  M  +G  P   +Y + I    K G+  +A++ + 
Sbjct: 410 LHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFE 469

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M+   + P   +    ++     G + EA + F ++   GL  +P   T   L+    +
Sbjct: 470 TMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGL--SPDSVTYNMLMKCYSK 527

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           A +++ A  + S +++KGCE +V      I++L+  G V  A      + +  + P   T
Sbjct: 528 AGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVT 587

Query: 563 FAKLMRGLKK 572
           +  L+ GL K
Sbjct: 588 YNILLTGLGK 597



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 211/473 (44%), Gaps = 46/473 (9%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            +  +LI +L K  +  A W +   ++  K  P ++T   + IL+        + KA+E+ 
Sbjct: 552  IINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVT---YNILLTGLGKEGKILKALELF 608

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
              M + GC P+   F  LLD L KN +V  A K+F  M      P +  + +++YG  +E
Sbjct: 609  GSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIRE 668

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            G++  A +   QMK     PD V    L+ G  + G++ DA +++ E   + C    + +
Sbjct: 669  GRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQF 727

Query: 317  ------------------------------------TVLIQALCRMEKMEEANRAFVEME 340
                                                  LI+ LC+ +K  +A   F +  
Sbjct: 728  WGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFT 787

Query: 341  RS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            ++ G    + +Y  L+ G   S   ++  E+ + M   G  PN  TY  ++ AH K + +
Sbjct: 788  KNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRI 847

Query: 400  EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
             +  +L  EMR  GC P+   +N++I    K   L +A++++ E+ +   SP   ++  +
Sbjct: 848  NKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPL 907

Query: 460  VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
            + G L  G   +A + F+EM+  G    P       L+N   ++ +++ A +++  +V +
Sbjct: 908  IDGLLKAGRSEQAMKIFEEMLDYG--CGPNSVIYNILINGFGKSGEIDFACELFKKMVKE 965

Query: 520  GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G   ++ ++TI +  L   G + EA  Y  ++    + P   ++  ++ GL K
Sbjct: 966  GIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGK 1018



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 154/279 (55%), Gaps = 1/279 (0%)

Query: 179  ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRE 237
            +L+     ++ + K  ++  EM   GCEP+      ++ AL K++++ +A  L+ E M  
Sbjct: 836  LLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSG 895

Query: 238  RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             F P+   +  L+ G  K G+  +A  +  +M D G  P+ V+YN L++G+ + G++  A
Sbjct: 896  DFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFA 955

Query: 298  FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
             EL K+M ++G  P+  SYT+L++ LC   +++EA + F E++ +G + D V+Y  +I+G
Sbjct: 956  CELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIING 1015

Query: 358  FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
              KSR++D    +   M  RGI P+  TY  ++L      +++  V++  E++ +G  P 
Sbjct: 1016 LGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPS 1075

Query: 418  VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            V  YN +IR     G   +A +V+ +M     SP T++F
Sbjct: 1076 VFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETF 1114



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 172/361 (47%), Gaps = 4/361 (1%)

Query: 208  DEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKEGKLVEAKYV 265
            D+ V   L+  LCK     +A  +FD+  +     P+L  +  L+ G        +A  +
Sbjct: 759  DDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALEL 818

Query: 266  LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
               MK AG  P+   YN LL  + +  ++   ++L  EMR +GC+PNA ++ ++I AL +
Sbjct: 819  FEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVK 878

Query: 326  MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385
               + +A   + E+          TY  LI G  K+ + ++  +I + M+  G  PN + 
Sbjct: 879  SNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI 938

Query: 386  YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
            Y  ++    K  E++   EL  +M K G  PD+ +Y +++   C  G + EAV  + E++
Sbjct: 939  YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELK 998

Query: 446  AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
               L P T S+  +++G      L EA   F EM  RG+  +P   T  AL+  L  A K
Sbjct: 999  LTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGI--SPDLYTYNALILHLGIAGK 1056

Query: 506  VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
            V++A  ++  +   G E +V+ +   I     +G+  +A S    MM     P  +TFA+
Sbjct: 1057 VDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQ 1116

Query: 566  L 566
            L
Sbjct: 1117 L 1117



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 202/411 (49%), Gaps = 6/411 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
           +LM+ ++ A  + KA ++L EM   GCEPD  +   L++ L K   V  A K+F  ++  
Sbjct: 520 MLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNL 579

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           +  P++  +  LL G  KEGK+++A  +   M ++G  P+ + +N+LL   ++   +  A
Sbjct: 580 KLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLA 639

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++   M    C+P+  +Y  +I  L R  +++ A   F +M++     D VT  TLI G
Sbjct: 640 LKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPG 698

Query: 358 FCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             +  +++   +++   + +  L  N   +  +M     + E+EE +     +       
Sbjct: 699 VVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQ 758

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           D      +I++ CK  +  +A NV+++  +   + P  +S+  ++ G LG     +A E 
Sbjct: 759 DDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALEL 818

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F++M   G  + P   T   LL++  +++++    D++S + ++GCE N     I I +L
Sbjct: 819 FEDMKSAG--THPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             + ++ +A     ++M  D  P P T+  L+ GL K    + A +I E++
Sbjct: 877 VKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEM 927



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 197/443 (44%), Gaps = 46/443 (10%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           ++++ G  G+L      W   + + Y      Y  LI++L K       + +++ M  + 
Sbjct: 346 LMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKG 405

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P L T    +  + +   AR + +A+E+L+ M   G +P  F +   +D   K+    
Sbjct: 406 IFPNLHTYNTMICGLLK---ARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPA 462

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A   F+ M++R   PS+    + LY   + G++ EA+ +   +   G  PD V YN L+
Sbjct: 463 KAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLM 522

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
             Y++ G++  A +LL EM  KGC+P+      LI  L +  +++ A + F  ++     
Sbjct: 523 KCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLA 582

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             VVTY  L++G  K  KI +  E+  SM + G  PN +T+  ++    K + ++  +++
Sbjct: 583 PTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKM 642

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
              M  + C PDV  YN +I                                   +G + 
Sbjct: 643 FCRMTMMNCNPDVLTYNTII-----------------------------------YGLIR 667

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN 524
           +G +  A  +F +M  +  LS P Y TL  L+  ++R  +VE A  V    V + C + N
Sbjct: 668 EGRIDYAFWFFHQM--KKFLS-PDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTN 724

Query: 525 VYAWTIWIHSLFSNGHVKEACSY 547
              W   +  + +   ++EA S+
Sbjct: 725 SQFWGELMECILTEAEIEEAISF 747


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 197/415 (47%), Gaps = 10/415 (2%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRF 184
           +++ QPN +     +  +IK+L ++   G V   +E  R   ++  +     +  LM   
Sbjct: 168 FSNIQPNGLS----FNLVIKALCRV---GNVDQAVEVFRGMSDRNCVADGYTYSTLMHGL 220

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
            +   + +A+ +LDEM   G  P+   F  L+ ALCK   +  A+KL D M  +   P+ 
Sbjct: 221 CNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNE 280

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             + SL++G C +GKL +A  +L +M      P+ + +  L+ G+ + G+  D   +L  
Sbjct: 281 VTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVS 340

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           +  KG   N  SY+ LI  L +  K E   + + EM   GC+ + + Y+ LI G C+  K
Sbjct: 341 LEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK 400

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
            D   E L  M  +G  PN  TY  +M  + +  ++ + + +  EM    C      Y++
Sbjct: 401 PDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSI 460

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   CK G+LKEA+ VW +M +  +     ++  M+HGF     + +  + F +M+   
Sbjct: 461 LINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHN 520

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
               P   T   LLN+      V  A D+ + ++ +GC+ +     I++ +L  N
Sbjct: 521 PKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDN 575



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 220/463 (47%), Gaps = 44/463 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIE----- 195
           + +LI++ S    F ++  L+ +M+ E  ++   + F+I+ + +  A + +KA++     
Sbjct: 68  FYSLIENFSNSLDFTSLEQLLHQMKCEN-RVFIEKSFIIMFKAYGKAHLPQKALDLFHRM 126

Query: 196 ---------------VLDEMPKYGC--------------------EPDEFVFGCLLDALC 220
                          VL+ + + GC                    +P+   F  ++ ALC
Sbjct: 127 GAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALC 186

Query: 221 KNSSVKEAAKLFDEMRERFKPSLRH-FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           +  +V +A ++F  M +R   +  + +++L++G C EG++ EA  +L +M+  G  P+ V
Sbjct: 187 RVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPV 246

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            +N L+S   + G ++ A +L+  M  KGC PN  +Y  L+  LC   K+++A      M
Sbjct: 247 AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRM 306

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
             + C  + +T+ TL+ GF K  +      +L S+ ++G   N+ +Y  ++    K+ + 
Sbjct: 307 VANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKG 366

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           E  ++L  EM + GC P+   Y+ +I   C+ G+  EA     EM+    +P + ++  +
Sbjct: 367 EHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSL 426

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G+   G + +A   +KEM                L+N L +  K++ A  VW  ++++
Sbjct: 427 MWGYFEAGDIHKAILVWKEMTDND--CNHHEVCYSILINGLCKNGKLKEALIVWKQMLSR 484

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           G +L+V A++  IH   +   V++       M+  +   QPD 
Sbjct: 485 GIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDV 527



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN +    VY ALI  L +  K       + EM K K     +  +  LM  +  A  +
Sbjct: 382 KPNTI----VYSALIDGLCREGKPDEAKEYLIEM-KNKGHTPNSFTYSSLMWGYFEAGDI 436

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            KAI V  EM    C   E  +  L++ LCKN  +KEA  ++ +M  R  K  +  ++S+
Sbjct: 437 HKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSM 496

Query: 250 LYGWCKEGKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           ++G+C    + +   +  QM   +   +PD+V YN LL+ +     ++ A ++L  M  +
Sbjct: 497 IHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQ 556

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GCDP+  +  + ++ L       +  R F++               L+    K ++    
Sbjct: 557 GCDPDFITCDIFLKTLRDNMDPPQDGREFLD--------------ELVVRLIKRQRTVGA 602

Query: 368 YEILDSMIQRGILPNQLTY 386
             I++ M+Q+ +LP   T+
Sbjct: 603 SNIIEVMLQKFLLPKPSTW 621



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P+  ++N+VI+  C++G + +AV V+  M   +      ++  ++HG   +G + EA   
Sbjct: 173 PNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSL 232

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
             EM   G    P       L+++L +   +  A  +   +  KGC  N   +   +H L
Sbjct: 233 LDEMQVEGTFPNPV--AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGL 290

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              G + +A S    M+    +P   TF  L+ G  K
Sbjct: 291 CLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVK 327



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLLRAQKVEMAKDV 512
           SF  +++  + +GC   A E++  ++     S   P   +   ++ +L R   V+ A +V
Sbjct: 138 SFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEV 197

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  +  + C  + Y ++  +H L + G + EA S   +M      P P  F  L+  L K
Sbjct: 198 FRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCK 257

Query: 573 LYNRQIAAEITEKV 586
             +   A+++ + +
Sbjct: 258 KGDLSRASKLVDNM 271


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 220/497 (44%), Gaps = 69/497 (13%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  LI +L +    GAV  + + MRK+   P + T   + +L+R       V  A ++L
Sbjct: 130 LYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFT---YNLLVRALCQNNRVGAARKML 186

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD--------------------EMRE 237
           DEM + GC PD+  +  ++  LCK   + EA ++                       M+E
Sbjct: 187 DEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQE 246

Query: 238 RF-----------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            F           +P++  +T+++  +CK G+L  A  +L +M   G  P++V +  L+ 
Sbjct: 247 VFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVR 306

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G    G++ DA ++ + M  +G  P+  SY +LI+ LC +  ++ A+     ME+ GC  
Sbjct: 307 GLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFP 366

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           +V TY+TLI GF K+  +     I + M + G  PN + Y +++    KK    +   L+
Sbjct: 367 NVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLI 426

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M    C P+   +N +IR  C    +  A+ V++EM      P   ++  ++HG   +
Sbjct: 427 DKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFRE 486

Query: 467 GCLIEACEYFKEM-------------------------------VGRGLLSA--PQYGTL 493
           G   +A     EM                               VG+ ++    P   T 
Sbjct: 487 GNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTF 546

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            A++++  +  +V MA  +   +    C  N+  +TI +  L +   + +A +Y L M+ 
Sbjct: 547 SAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLY 606

Query: 554 ADVMPQPDTFAKLMRGL 570
             + P   T+  L+RG+
Sbjct: 607 EGIYPNTVTWNVLVRGV 623



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 155/309 (50%), Gaps = 3/309 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           +T  + IL+R   S   +K A  +L+ M ++GC P+   +  L+D   K   +  A  ++
Sbjct: 332 STVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIW 391

Query: 233 DEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           ++M R   KP++  +T+++  +CK+    +AK ++ +M      P+ V +N L+      
Sbjct: 392 NDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDC 451

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            ++  A  +  EMRR GC PN  +Y  LI  L R     +A     EM+  G E  +VTY
Sbjct: 452 RRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTY 511

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            T++SG C++R        +  MI +GI PN  T+  I+ A+ K+ E+     ++G M  
Sbjct: 512 NTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNV 571

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG-FLGQGCLI 470
           + C  ++  Y +++   C   +L +A+    +M    + P T ++ V+V G F   GC I
Sbjct: 572 VNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFRNLGC-I 630

Query: 471 EACEYFKEM 479
           E  ++ + +
Sbjct: 631 EPSDFIQHI 639



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 167/394 (42%), Gaps = 11/394 (2%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF- 239
           +RR A+A  V      L EM   G    E      + A  +  +   A K F        
Sbjct: 62  VRRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLG 121

Query: 240 --KPS-LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
             +P+  R +  L+    +E  +     V   M+  G  P++  YN L+    Q  ++  
Sbjct: 122 CARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGA 181

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A ++L EM RKGC P+  +Y  ++  LC++++++EA      M          +Y  ++ 
Sbjct: 182 ARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVA-----ASYNAIVL 236

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             C+  ++   + ++  M+ RG+ PN +TY  I+ A  K  EL     ++  M   GC P
Sbjct: 237 ALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTP 296

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           +V  +  ++R     G + +A+++W  M A   +P T S+ +++ G    G L  A    
Sbjct: 297 NVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSIL 356

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
             M   G    P   T   L++   +A  +  A  +W+ +   GC+ NV  +T  +    
Sbjct: 357 NSMEQHGCF--PNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFC 414

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
                 +A S    M+  +  P   TF  L+R L
Sbjct: 415 KKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSL 448


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/513 (24%), Positives = 231/513 (45%), Gaps = 68/513 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L ++ +      + ++MR++          VI+   F S R ++ AI +  EM
Sbjct: 42  YTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRME-AINLFSEM 100

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + GCEP+   +  +++A+CK + ++E  ++ DEM E+   PS+  + +L+ G+CKEG +
Sbjct: 101 RERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMV 160

Query: 260 VEAKYVL-----------------------------------VQMKDAGFEPDIVVYNNL 284
             A+ +L                                    +M ++   P +V YN+L
Sbjct: 161 EAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSL 220

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           + G  ++G +  A+ LL  M   G  P+  +Y+V I  LC+  ++EEAN  F  ++  G 
Sbjct: 221 IHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGI 280

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
           +A+ V YT LI G+CK+ K+D    +LD M+    LPN  TY  ++    K+ +++E + 
Sbjct: 281 KANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALL 340

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           LM  M + G    V  Y ++I    K G+   A  + ++M ++   P    +   +H F 
Sbjct: 341 LMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFC 400

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G + EA +    M  RG++  P   T   ++++      +  A DV   +   GC+ +
Sbjct: 401 TRGNIKEAEDMMSMMFERGVM--PDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPS 458

Query: 525 VYAWTIWIHSLFSNGHVKE-----ACSYCLDMMDADVM---------------------- 557
            + ++  I  L      K+      C    ++  ADV                       
Sbjct: 459 HHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHG 518

Query: 558 --PQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             P  +T+AKL+ GL K+    +A ++ + + +
Sbjct: 519 CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNE 551



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 189/412 (45%), Gaps = 40/412 (9%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK----------------------- 226
           V  A  V + MPK GC  +E  +  L+  LC+   V                        
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTV 79

Query: 227 ------------EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
                       EA  LF EMRER  +P++  +T ++   CKE KL E + +L +M + G
Sbjct: 80  IVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG 139

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P +  YN L+ GY + G +  A E+L  M    C+PN  +Y  LI   CR + +  A 
Sbjct: 140 LVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAM 199

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               +M  S     VVTY +LI G CK   +D  Y +L+ M + G++P+Q TY   +   
Sbjct: 200 ALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTL 259

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            KK  +EE   L   +++ G   +   Y  +I   CK G++ +A ++ + M      P +
Sbjct: 260 CKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNS 319

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDV 512
            ++  ++ G   +  + EA    + M+ +GL  + P Y     L+ ++L+    + A  +
Sbjct: 320 STYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTY---TILIVAMLKEGDFDYAHRI 376

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
              +V+ G + +VY +T +IH+  + G++KEA      M +  VMP   T+ 
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYT 428



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 161/333 (48%), Gaps = 11/333 (3%)

Query: 249 LLYGWCKEGKLVEAKY---------VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           ++ G+CK G LVEA           V   M   G   + V Y NL+ G  ++G++ +   
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           + K+MR   C P   +YTV++ AL    +  EA   F EM   GCE ++ TYT +I+  C
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           K  K++    ILD M+++G++P+  TY  ++  + K+  +E   E++  M    C P+  
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNER 180

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN +I   C+   +  A+ + ++M  + L+P   ++  ++HG    G L  A      M
Sbjct: 181 TYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLM 240

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              G++  P   T    +++L +  ++E A  +++ +  KG + N   +T  I      G
Sbjct: 241 NENGVV--PDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAG 298

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            + +A S    M+  D +P   T+  L+ GL K
Sbjct: 299 KMDDANSLLDRMLTEDCLPNSSTYNALIDGLCK 331



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 140/577 (24%), Positives = 225/577 (38%), Gaps = 146/577 (25%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN +H+Y V   +I ++ K  K      +++EM  EK  + +   +  L+  +    MV
Sbjct: 106 EPN-IHTYTV---MINAMCKETKLEEGRRILDEM-VEKGLVPSVPTYNALIDGYCKEGMV 160

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSL 249
           + A E+LD M    C P+E  +  L+   C+  +V  A  L  +M E R  PS+  + SL
Sbjct: 161 EAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSL 220

Query: 250 LYG--------------------------W---------CKEGKLVEAKYVLVQMKDAGF 274
           ++G                          W         CK+G++ EA  +   +K+ G 
Sbjct: 221 IHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGI 280

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA-- 332
           + + V+Y  L+ GY + GKM DA  LL  M  + C PN+++Y  LI  LC+  K++EA  
Sbjct: 281 KANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALL 340

Query: 333 ---------------------------------NRAFVEMERSGCEADVVTYTTLISGFC 359
                                            +R   +M  SG + DV  YT  I  FC
Sbjct: 341 LMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFC 400

Query: 360 KSRKIDRCYEILDSMIQRGIL-----------------------------------PNQL 384
               I    +++  M +RG++                                   P+  
Sbjct: 401 TRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHH 460

Query: 385 TYLHIMLAHEKKEEL------------------------------EECVELMGEMRKIGC 414
           TY   ++ H  KEEL                              E  +EL  +M + GC
Sbjct: 461 TY-SCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGC 519

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
            P+++ Y  +I   CK+G L  A  +++ M    +SP    +  +++     G   +A  
Sbjct: 520 SPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVR 579

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
               M+  G L  P   +L  L   L      E AK V+S ++  G   +  AW I I  
Sbjct: 580 LVGAMMEHGHL--PLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDG 637

Query: 535 LFSNGHVKEACSYCLDMMDA-DVMPQPDTFAKLMRGL 570
           L  NG + + CS  L +M+A      P T+  L+ GL
Sbjct: 638 LLKNG-LSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 3/324 (0%)

Query: 222 NSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           N+ V  A  +F+ M ++  + +   +T+L++G C+ G++ E   +  +M++    P +  
Sbjct: 17  NNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRT 76

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y  ++    + G+  +A  L  EMR +GC+PN ++YTV+I A+C+  K+EE  R   EM 
Sbjct: 77  YTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMV 136

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G    V TY  LI G+CK   ++   EILD M      PN+ TY  ++    +K+ + 
Sbjct: 137 EKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVH 196

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             + L+ +M +    P V  YN +I   CK+G L  A  + N M    + P   ++ V +
Sbjct: 197 RAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFI 256

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
                +G + EA   F  +  +G+ +     T  AL++   +A K++ A  +   ++T+ 
Sbjct: 257 DTLCKKGRIEEANVLFNSLKEKGIKANEVIYT--ALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 521 CELNVYAWTIWIHSLFSNGHVKEA 544
           C  N   +   I  L     V+EA
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEA 338


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 188/361 (52%), Gaps = 4/361 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+    +++  G V  ++  M K       T  + +L+  ++ +  +++A ++ DEM
Sbjct: 226 YNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVT-TYTMLIEWYSRSSKIEEAEKLFDEM 284

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            K G EPD +++  +++  CK  ++K A  LFDEM ER   P+   + +L+ G CK G++
Sbjct: 285 LKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEM 344

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A+ ++  M+  G + + V++N L+ GY + G + +A  L   M++KG + +A +  ++
Sbjct: 345 KAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNII 404

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
               CR  + EEA R  + ME  G   +VV+++ LI  +CK +       +   M ++G 
Sbjct: 405 ASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGK 464

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ +TY   +  + KK ++EE  +L+ EM++ G +PD   Y  +I      G +  A+ 
Sbjct: 465 APSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALE 524

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++NEM    L+    ++ V++ G    G   EA + + EM   G++  P  G   +L+ S
Sbjct: 525 LFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIV--PDDGIYSSLIAS 582

Query: 500 L 500
           L
Sbjct: 583 L 583



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 200/436 (45%), Gaps = 43/436 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + A++  L K  +     ALM+E+  +  KP +IT   +  L+  +   + V    E+L 
Sbjct: 191 WTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVIT---YNTLLNGYIEIKDVGGVNEILS 247

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M K   + +   +  L++   ++S ++EA KLFDEM ++  +P +  +TS++   CK G
Sbjct: 248 LMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFG 307

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  A  +  +M +    P+   Y  L++G  + G+M  A  ++ +M+ KG D N   + 
Sbjct: 308 NMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFN 367

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C+   ++EA R    M++ G E D  T   + SGFC+S + +    +L +M +R
Sbjct: 368 TLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEER 427

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ PN +++  ++  + K++   E   L   M K G  P V  YN  I   CK G+++EA
Sbjct: 428 GVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEA 487

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             + NEM+   L P T ++  ++ G    G +  A E F EM        PQ G     L
Sbjct: 488 YKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM--------PQLG-----L 534

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           N                         NV  +T+ I  L  +G   EA     +M    ++
Sbjct: 535 NR------------------------NVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIV 570

Query: 558 PQPDTFAKLMRGLKKL 573
           P    ++ L+  L K+
Sbjct: 571 PDDGIYSSLIASLHKV 586



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/528 (23%), Positives = 224/528 (42%), Gaps = 91/528 (17%)

Query: 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKF-------------GAVWALMEEMRK--- 166
           R++ +  + P+       +  L   L + RKF             G +W+ +E +     
Sbjct: 49  RFFDFLRQNPSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVERIVSSIG 108

Query: 167 ---EKPQLITTEVFV-ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
               +P ++  E F  +L R +   RM   ++EV D   K G E DE      L AL ++
Sbjct: 109 GEFNEPSIV--EKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRS 166

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            +++   +   +M +   +  +  +T+++ G CK+G++V AK ++ ++   GF+P ++ Y
Sbjct: 167 GNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITY 226

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N LL+GY ++  +    E+L  M +   D N  +YT+LI+   R  K+EEA + F EM +
Sbjct: 227 NTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLK 286

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G E DV  YT++I+  CK   + R + + D M +R ++PN  T                
Sbjct: 287 KGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYT---------------- 330

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                              Y  +I  ACK GE+K A  + N+M++  +      F  ++ 
Sbjct: 331 -------------------YGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMD 371

Query: 462 GFLGQGCLIEA------------------CEYF---------KEMVGRGLLS------AP 488
           G+  +G + EA                  C            +E   R LL+      AP
Sbjct: 372 GYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 431

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              +   L++   + Q    A+ ++  +  KG   +V  +  +I      G ++EA    
Sbjct: 432 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 491

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
            +M +  +MP   T+  L+ G +   N   A E+  ++ ++   R + 
Sbjct: 492 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 539


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 219/470 (46%), Gaps = 33/470 (7%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMR---------KF-------GAVWALMEEMRKE 167
           ++ + S  P + H+   Y +++  L   R          F       G+  ++   + + 
Sbjct: 96  FFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVFASILET 155

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLD-------EMPKYGCEPDEFVFGCLLDALC 220
           K  L ++ VF  LM  +     V  AI+          ++P  GC+       CLL+ + 
Sbjct: 156 KGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCK-------CLLERMI 208

Query: 221 KNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
           K SS   A + + E+ +  + P++  F  L+   CKEGK+ +A+ +  +++  G +P  V
Sbjct: 209 KMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAV 268

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            +N L++GY + G + + F L   M      P+  +Y+ LI  LC+  ++E+AN  F EM
Sbjct: 269 SFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEM 328

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
              G   + VT+TTLI+G CK+ ++D   EI   M  +G+  + + Y  ++    K    
Sbjct: 329 CDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYF 388

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            E  + +GEM K G +PD   Y  ++  +CK G+L+ A+ +  EM    +     +F  +
Sbjct: 389 REARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAI 448

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G    G +++A    +EM+  GL   P  GT   +++   +   V+M   +   + + 
Sbjct: 449 ISGLCRDGKIVDAERTLREMLRAGL--KPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSD 506

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           G    V  + + ++ L   G VK A      M++  V+P   T+  L++G
Sbjct: 507 GHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQG 556



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 216/442 (48%), Gaps = 22/442 (4%)

Query: 67  HNEFSH--DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRY 124
           + EF +  D  + FR+ KK + ++P        +G      L ER+I        L +  
Sbjct: 172 YTEFGYVSDAIQCFRLTKKHNLKIP-------FNGC---KCLLERMIKMSSPMVALEFYL 221

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
            +  S  P  V++++V   L+  L K  K      + +E+RK   Q  T   F  L+  +
Sbjct: 222 EILDSGYPPNVYTFNV---LMNRLCKEGKVKDAQLIFDEIRKTGLQ-PTAVSFNTLINGY 277

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSL 243
             +  +++   +   M ++   PD F +  L+D LCK   +++A  LF EM +R   P+ 
Sbjct: 278 CKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPND 337

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             FT+L+ G CK G++  A  +  QM   G + D+V+YN L+ G  + G   +A + + E
Sbjct: 338 VTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGE 397

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M ++G  P+  +YT L+   C+   +E A     EM + G + D V +T +ISG C+  K
Sbjct: 398 MTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGK 457

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           I      L  M++ G+ P+  TY  +M    KK +++   +L+ EM+  G +P V  YNV
Sbjct: 458 IVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNV 517

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++   CK G++K A  + N M    + P   ++ +++ G    G L +      EM   G
Sbjct: 518 LMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM---G 574

Query: 484 LLSAPQYGTLKALLNSLLRAQK 505
           L+S   Y + ++LL+ L +A K
Sbjct: 575 LVS--DYASYRSLLHELSKASK 594



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 134/309 (43%), Gaps = 37/309 (11%)

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           V++ L+S Y + G ++DA +  +  ++       N    L++ + +M     A   ++E+
Sbjct: 164 VFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEI 223

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
             SG   +V T+  L++  CK  K+     I D                           
Sbjct: 224 LDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFD--------------------------- 256

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
                   E+RK G  P   ++N +I   CK G L+E   +   ME   + P   ++  +
Sbjct: 257 --------EIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSAL 308

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G   +  L +A   FKEM  RGL+  P   T   L+N   +  +V++A +++  + TK
Sbjct: 309 IDGLCKECQLEDANHLFKEMCDRGLV--PNDVTFTTLINGQCKNGRVDLALEIYQQMFTK 366

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579
           G + ++  +   I  L   G+ +EA  +  +M    ++P   T+  L+ G  K  + ++A
Sbjct: 367 GLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELA 426

Query: 580 AEITEKVRK 588
            E+ +++ K
Sbjct: 427 LEMRKEMVK 435


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 207/474 (43%), Gaps = 44/474 (9%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S   Y AL+ +L + R  G +  L+EEM     +P + T   + I +R    A  +  A 
Sbjct: 226 SMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYT---YTICIRVLGRAGRIDDAY 282

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGW 253
            +L  M   GC PD   +  L+DALC    + +A +L+ +MR    KP L  + +L+  +
Sbjct: 283 GILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKF 342

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
              G L   K    +M+  G+ PD+V Y  L+    + GK+  AF++L  MR +G  PN 
Sbjct: 343 GNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNL 402

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++Y  LI  L  + +++EA   F  ME  G      +Y   I  + K    ++  +  + 
Sbjct: 403 HTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEK 462

Query: 374 MIQRGILP-----------------------------------NQLTYLHIMLAHEKKEE 398
           M +RGI+P                                   + +TY  +M  + K  +
Sbjct: 463 MKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQ 522

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +++  +L+ EM   GC PD+   N +I    K G + EA  ++  ++   L+P   ++ +
Sbjct: 523 IDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNI 582

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G   +G L++A + F  M   G    P   T  ALL+ L +   V++A  ++  +  
Sbjct: 583 LITGLGKEGKLLKALDLFGSMKESG--CPPNTVTFNALLDCLCKNDAVDLALKMFCRMTI 640

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             C  +V  +   I+ L   G    A  +    M   + P   T   L+ G+ K
Sbjct: 641 MNCSPDVLTYNTIIYGLIKEGRAGYAFWF-YHQMKKFLSPDHVTLYTLLPGVVK 693



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 225/493 (45%), Gaps = 45/493 (9%)

Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTE 175
           N    Y+   S+ PN VH+ +    +++ L    ++     V+ LM++    +       
Sbjct: 103 NSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINR----NPN 158

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
            ++ + +  +    +++A   L +M + G   + + +  L+  L +    KEA K++  M
Sbjct: 159 TYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRM 218

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
             E  KPS++ +++L+    +         +L +M+  G  P+I  Y   +    + G++
Sbjct: 219 ISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRI 278

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN--------------------- 333
            DA+ +LK M  +GC P+  +YTVLI ALC   K+++A                      
Sbjct: 279 DDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITL 338

Query: 334 --------------RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
                         R + EME  G   DVVTYT L+   CKS K+D+ +++LD M  RGI
Sbjct: 339 MSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGI 398

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +PN  TY  ++        L+E +EL   M  +G  P   +Y + I    KLG+ ++A++
Sbjct: 399 VPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALD 458

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            + +M+   + P   +    ++     G + EA + F ++   GL  +P   T   ++  
Sbjct: 459 TFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGL--SPDSVTYNMMMKC 516

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +A +++ A  + + ++++GCE ++      I +L+  G V EA      + D  + P 
Sbjct: 517 YSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPT 576

Query: 560 PDTFAKLMRGLKK 572
             T+  L+ GL K
Sbjct: 577 VVTYNILITGLGK 589



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 207/473 (43%), Gaps = 46/473 (9%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            V  +LI +L K  +    W +   ++  K  P ++T   + IL+        + KA+++ 
Sbjct: 544  VVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVT---YNILITGLGKEGKLLKALDLF 600

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
              M + GC P+   F  LLD LCKN +V  A K+F  M      P +  + +++YG  KE
Sbjct: 601  GSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKE 660

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG-------- 308
            G+   A +   QMK     PD V    LL G  + G++ DA +++ E   +         
Sbjct: 661  GRAGYAFWFYHQMKKF-LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQV 719

Query: 309  -------------------------CDP---NANSYTVLIQALCRMEKMEEANRAFVEME 340
                                     C+    + N    LI+ LC+ +K  +A + F +  
Sbjct: 720  WGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFT 779

Query: 341  RS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            +S G      +Y  L+ G       +   ++   M   G  PN  TY  ++ AH K + +
Sbjct: 780  KSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRI 839

Query: 400  EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
            +E  EL  EM   GC P++  +N++I    K   + +A++++ E+ +   SP   ++  +
Sbjct: 840  DELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPL 899

Query: 460  VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
            + G L  G   EA + F+EM        P       L+N   +A  V +A D++  ++ +
Sbjct: 900  IGGLLKAGRSEEAMKIFEEM--PDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKE 957

Query: 520  GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G   ++ ++TI +  LF  G V +A  Y  ++    + P   ++  ++ GL K
Sbjct: 958  GIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGK 1010



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 160/319 (50%), Gaps = 6/319 (1%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  L+  L       A   L  EM+     P + T   + +L+     ++ + +  E+ +
Sbjct: 791  YNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFT---YNLLLDAHGKSKRIDELFELYN 847

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            EM   GC+P+      ++ AL K++S+ +A  L+ E+    F P+   +  L+ G  K G
Sbjct: 848  EMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAG 907

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +  EA  +  +M D   +P+  +YN L++G+ + G +  A +L K M ++G  P+  SYT
Sbjct: 908  RSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYT 967

Query: 318  VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +L++ L    ++++A   F E++ +G + D V+Y  +I+G  KSR+++    +   M  R
Sbjct: 968  ILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNR 1027

Query: 378  GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            GI P   TY  ++L       +++  ++  E++ +G  P+V  YN +IR   K G    A
Sbjct: 1028 GISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRA 1087

Query: 438  VNVWNEMEAASLSPGTDSF 456
             +V+ +M     SP   +F
Sbjct: 1088 FSVFKKMMIVGCSPNAGTF 1106



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 202/456 (44%), Gaps = 14/456 (3%)

Query: 118  GNLGYRYYMWASKQ----PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT 173
            G  GY ++ +   +    P++V  Y +   ++K     R   A+  +ME + +   Q  +
Sbjct: 661  GRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKD---GRVEDAIKIVMEFVHQSGLQ-TS 716

Query: 174  TEVFVILMRRFASARMVKKAIEVLDEMP-KYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
             +V+  LM        +++AI   + +     C+ D  +   L+  LCK     +A KLF
Sbjct: 717  NQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILP-LIRVLCKQKKALDAKKLF 775

Query: 233  DEMRERF--KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
            D+  +     P+   +  L+ G         A  + V+MK+AG  P+I  YN LL  + +
Sbjct: 776  DKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGK 835

Query: 291  MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
              ++ + FEL  EM  +GC PN  ++ ++I AL +   + +A   + E+          T
Sbjct: 836  SKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCT 895

Query: 351  YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
            Y  LI G  K+ + +   +I + M      PN   Y  ++    K   +    +L   M 
Sbjct: 896  YGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMI 955

Query: 411  KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
            K G  PD+ +Y +++      G + +AV+ + E++   L P T S+ +M++G      L 
Sbjct: 956  KEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLE 1015

Query: 471  EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            EA   F EM  RG+  +P+  T  AL+     A  V+ A  ++  +   G E NV+ +  
Sbjct: 1016 EALSLFSEMKNRGI--SPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNA 1073

Query: 531  WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             I     +G+   A S    MM     P   TFA+L
Sbjct: 1074 LIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 199/411 (48%), Gaps = 6/411 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
           ++M+ ++ A  + KA ++L EM   GCEPD  V   L+D L K   V EA ++F  +++ 
Sbjct: 512 MMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDL 571

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
           +  P++  +  L+ G  KEGKL++A  +   MK++G  P+ V +N LL    +   +  A
Sbjct: 572 KLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLA 631

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
            ++   M    C P+  +Y  +I  L +  +   A   + +M++     D VT  TL+ G
Sbjct: 632 LKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKF-LSPDHVTLYTLLPG 690

Query: 358 FCKSRKIDRCYEILDSMI-QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             K  +++   +I+   + Q G+  +   +  +M     + E+EE +     +       
Sbjct: 691 VVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQ 750

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           D +    +IR+ CK  +  +A  ++++  ++    P  +S+  ++ G LG      A + 
Sbjct: 751 DDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKL 810

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F EM   G    P   T   LL++  ++++++   ++++ ++ +GC+ N+    I I +L
Sbjct: 811 FVEMKNAG--CCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISAL 868

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +  + +A     +++  D  P P T+  L+ GL K    + A +I E++
Sbjct: 869 VKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEM 919



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 160/375 (42%), Gaps = 38/375 (10%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           +L+ L  +  V++ A +FD M+++    +   + ++      +G + +A + L +M+ AG
Sbjct: 128 MLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAG 187

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           F  +   YN L+    Q G   +A ++ K M  +G  P+  +Y+ L+ AL R        
Sbjct: 188 FVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIM 247

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               EME  G   ++ TYT  I    ++ +ID  Y IL +                    
Sbjct: 248 DLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKT-------------------- 287

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
                          M   GC PDV  Y V+I   C  G+L +A  ++ +M A+S  P  
Sbjct: 288 ---------------MEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDL 332

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            +++ ++  F   G L     ++ EM   G   AP   T   L+ +L ++ KV+ A D+ 
Sbjct: 333 VTYITLMSKFGNYGDLETVKRFWSEMEADGY--APDVVTYTILVEALCKSGKVDQAFDML 390

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             +  +G   N++ +   I  L +   + EA     +M    V P   ++   +    KL
Sbjct: 391 DVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKL 450

Query: 574 YNRQIAAEITEKVRK 588
            + + A +  EK++K
Sbjct: 451 GDPEKALDTFEKMKK 465



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 22/343 (6%)

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G++ D   +   M+++  + N N+Y  + +AL     + +A  A  +M ++G   +  +Y
Sbjct: 136 GRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSY 195

Query: 352 TTLI-----SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
             LI      GFCK        ++   MI  G+ P+  TY  +M+A  ++ +    ++L+
Sbjct: 196 NGLIYFLLQPGFCK-----EALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLL 250

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            EM  +G  P++  Y + IR+  + G + +A  +   ME     P   ++ V++      
Sbjct: 251 EEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAA 310

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L +A E + +M  R     P   T   L++       +E  K  WS +   G   +V 
Sbjct: 311 GKLDKAKELYTKM--RASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVV 368

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            +TI + +L  +G V +A     DM+D      ++P   T+  L+ GL  L     A E+
Sbjct: 369 TYTILVEALCKSGKVDQA----FDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALEL 424

Query: 583 TEKVRKMA-AERQITFKMY-KRRGERDLKEKAKKQVDGRKRRA 623
              +  +  A    ++ ++    G+    EKA    +  K+R 
Sbjct: 425 FNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRG 467


>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Glycine max]
          Length = 449

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 200/384 (52%), Gaps = 14/384 (3%)

Query: 104 PGLTE-RVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           P +TE + +    +A +L +RY     K+  + H Y  Y AL+  L++ R F AV  ++ 
Sbjct: 44  PFVTEVKTVEDPEEALSLFHRY-----KEQGFRHYYPSYAALLYKLARSRMFDAVETILA 98

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
            M+  + Q     VF+ L + +      +KA+E+ + MP++ C      F  LL+ L  N
Sbjct: 99  HMKDTEMQ-CRESVFIALFQHYGP----EKAVELFNRMPQFNCTRTIQSFNALLNVLIDN 153

Query: 223 SSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
               EA  +F +  E  F+P+   F  ++ G   +G+  +A  V  +M     +P +V Y
Sbjct: 154 DRFDEANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTY 213

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N+L+    + G +  A  LL++M +KG   N  +Y +L++ LC +EK EEA +   +M  
Sbjct: 214 NSLIGFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAY 273

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE-ELE 400
            GC+A  V +  L++   K  K++    +L  M +R + P+ +TY +I++ +  KE +  
Sbjct: 274 RGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTY-NILINYLCKEGKAM 332

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  +++ EM+  GCVP+ + Y +V+   C++G+ + A++V N M  +   P +++F  MV
Sbjct: 333 EAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMV 392

Query: 461 HGFLGQGCLIEACEYFKEMVGRGL 484
            G L  G +  +C   +EM  R L
Sbjct: 393 VGLLKSGNIDGSCFVLEEMEKRKL 416



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 6/234 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y +LI  L +        AL+E+M  +K +      + +LM    S    
Sbjct: 207 QPSVV----TYNSLIGFLCRKGDLDKAMALLEDM-GQKGKHANEVTYALLMEGLCSVEKT 261

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           ++A +++ +M   GC+     FG L++ L K   V+EA  L  EM++R  KP +  +  L
Sbjct: 262 EEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNIL 321

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +   CKEGK +EA  VL++M+  G  P+   Y  ++ G  Q+G    A  +L  M     
Sbjct: 322 INYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRH 381

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
            P + ++  ++  L +   ++ +     EME+   E D+ ++ T+I   C   K
Sbjct: 382 CPRSETFNCMVVGLLKSGNIDGSCFVLEEMEKRKLEFDLESWETIIKSACSENK 435



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 136/323 (42%), Gaps = 8/323 (2%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE-LLKEMRRKGCDPNANSYTVL 319
           EA  +  + K+ GF      Y  LL   A+  +M DA E +L  M+    D        +
Sbjct: 57  EALSLFHRYKEQGFRHYYPSYAALLYKLAR-SRMFDAVETILAHMK----DTEMQCRESV 111

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
             AL +    E+A   F  M +  C   + ++  L++    + + D   +I     + G 
Sbjct: 112 FIALFQHYGPEKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEANDIFGKSYEMGF 171

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +T+  ++     K E  +  E+  EM +    P V  YN +I   C+ G+L +A+ 
Sbjct: 172 RPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMA 231

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +  +M          ++ +++ G        EA +   +M  RG  + P       L+N 
Sbjct: 232 LLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPV--NFGVLMND 289

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L +  KVE AK +   +  +  + +V  + I I+ L   G   EA    L+M     +P 
Sbjct: 290 LGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCVPN 349

Query: 560 PDTFAKLMRGLKKLYNRQIAAEI 582
             T+  ++ GL ++ + ++A  +
Sbjct: 350 AATYRMVVDGLCQIGDFEVALSV 372


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 212/469 (45%), Gaps = 39/469 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDE 199
           Y  ++KSL   RK G    L+  M +     +   V +  ++  F     V KA ++ +E
Sbjct: 182 YCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNE 241

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGW----- 253
           M + G  PD   + C+++ALCK  ++ +A  +  +M ++   P    + SL+YG+     
Sbjct: 242 MVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQ 301

Query: 254 ------------------------------CKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
                                         CK GK+ +A+ V   M   G + DI  Y  
Sbjct: 302 WKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKI 361

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           +L+GYA  G + D  EL   M   G  P+++ + VLI+A  +   ++ A   F EM   G
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
            E DVVTY+T+I+  C+  K+D   E  + MI +G+ P+  TY  ++       +L +  
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAK 481

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           +L+ +M   G  PD+  +N +I   CKLG + +A N+++   +  L P    +  ++ G+
Sbjct: 482 DLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGY 541

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G +  A   F  MV  G+   P       L+N   +  +++    ++  I+ KG + 
Sbjct: 542 CLVGKMENALRVFDVMVSAGI--QPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKP 599

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +   + I +H LF  G    A     +M ++ +     T++ ++ GL K
Sbjct: 600 STTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFK 648



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 195/405 (48%), Gaps = 8/405 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLDEM 200
           +L+ SL K  K      + + M  +  +   T++F   I++  +A+   +    E+ + M
Sbjct: 326 SLMASLCKHGKIKDARDVFDSMAMKGQK---TDIFSYKIMLNGYATKGCLVDLTELFNLM 382

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  PD  +F  L+ A  K   +  A  +F+EMRE+  +P +  +++++   C+ GK+
Sbjct: 383 LSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKM 442

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A     QM D G  P I  Y+ L+ G+   G +  A +L+ +M  KG  P+   +  +
Sbjct: 443 DDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFI 502

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I  LC++ ++ +A   F      G   +V+ Y TL+ G+C   K++    + D M+  GI
Sbjct: 503 INNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGI 562

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN + Y  ++  + K   ++E + L  E+   G  P  + YN+++    + G    A  
Sbjct: 563 QPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKV 622

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            ++EM  + ++    ++ +++ G     C  EA   FKE+    +       TL  ++  
Sbjct: 623 KFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKEL--HAMNVKIDITTLNIMIAG 680

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + + ++VE AKD+++ I   G   +V  ++I + +L   G V+EA
Sbjct: 681 MFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEA 725



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 202/441 (45%), Gaps = 41/441 (9%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVL-DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
           I T +   L+R    A+   +A+++L   MP  GC PD F +  +L +LC +    +A +
Sbjct: 141 IDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADE 200

Query: 231 LFDEMRERFK---PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV-------- 279
           L   M E      P+   + +++ G+ KEG + +A  +  +M   G  PD+         
Sbjct: 201 LLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNA 260

Query: 280 ---------------------------VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
                                       YN+L+ GY+  G+  +A  + K+M  +G  P+
Sbjct: 261 LCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPD 320

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +   L+ +LC+  K+++A   F  M   G + D+ +Y  +++G+     +    E+ +
Sbjct: 321 VVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFN 380

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+  GI P+   +  ++ A+ K   L+    +  EMR+ G  PDV  Y+ VI   C++G
Sbjct: 381 LMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIG 440

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           ++ +AV  +N+M    ++P   ++  ++ GF   G L++A +   +M+ +G+   P  G 
Sbjct: 441 KMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGM--RPDIGC 498

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              ++N+L +  +V  A++++   ++ G   NV  +   +      G ++ A      M+
Sbjct: 499 FNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMV 558

Query: 553 DADVMPQPDTFAKLMRGLKKL 573
            A + P    +  L+ G  K+
Sbjct: 559 SAGIQPNVVVYGTLVNGYCKV 579



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 180/406 (44%), Gaps = 37/406 (9%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           + +F +L++ +A   M+ +A  + +EM + G EPD   +  ++ ALC+   + +A + F+
Sbjct: 391 SHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFN 450

Query: 234 EMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI-------------- 278
           +M ++   PS+  +  L+ G+C  G L++AK +++QM + G  PDI              
Sbjct: 451 QMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLG 510

Query: 279 ---------------------VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
                                +VYN L+ GY  +GKM +A  +   M   G  PN   Y 
Sbjct: 511 RVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYG 570

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C++ +++E    F E+   G +     Y  ++ G  ++ +          M + 
Sbjct: 571 TLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTES 630

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  ++ TY  ++    K    +E + L  E+  +    D++  N++I    ++  ++EA
Sbjct: 631 GIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEA 690

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +++  +  + L P   ++ +M+   + +G + EA + F  M   G    P    L  ++
Sbjct: 691 KDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAG-CEQPNSQLLNHVV 749

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
             LL  +++  A    S I  +   L+    T+ I    S G  +E
Sbjct: 750 RELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKGTCRE 795


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 195/442 (44%), Gaps = 38/442 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           P   HSY   R +I  L +  +      L ++M  +            L    A+A  + 
Sbjct: 118 PPSAHSY---RYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLD 174

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251
            A  +L + P++GC  + + +  L+++      V++A  LF+                  
Sbjct: 175 AAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFE------------------ 216

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           GW + G                + PD+  +N  + G  Q+G +  A EL++ M   GC P
Sbjct: 217 GWIQGG---------------AYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSP 261

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSG-CEADVVTYTTLISGFCKSRKIDRCYEI 370
           +  +  +L+  LCR++++         ++R G C  +VVTYT++ISG+CKS +++    +
Sbjct: 262 DTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAV 321

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
            + MI  G  PN +TY  ++  + K   +   V +  +M    C PDV  ++ +I   C+
Sbjct: 322 YNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCR 381

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+L +A+  W EM    + P   +F +++  F  Q    EA  + KE+  R  + AP+ 
Sbjct: 382 CGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDI-APRA 440

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                +++ L +  KV+ A  +   +  KGC  + Y +TI I      G + EA ++   
Sbjct: 441 FICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNK 500

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M+D    P   T    +  L K
Sbjct: 501 MVDTGCSPDSITVNSFIGCLLK 522



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 157/367 (42%), Gaps = 49/367 (13%)

Query: 114 CGDAGNLGYRYYMWASKQPNY---VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ 170
           C +AG L     +  SK P +   V +Y  Y  L+ S     +     AL E   +    
Sbjct: 167 CANAGFLDAAAALL-SKAPQFGCCVEAY-AYNKLMNSFIGCGRVQDAVALFEGWIQGGAY 224

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
                 F + ++       V+KA+E+++ M ++GC PD      L+  LC+   VKE ++
Sbjct: 225 SPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCR---VKEVSR 281

Query: 231 LFDEMRERFK-----PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
             + +R   +     P++  +TS++ G+CK G++ +A  V   M   G  P+ V YN L+
Sbjct: 282 GREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLI 341

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
           +GY + G M  A  + ++M  + C P+  +++ LI   CR  ++++A R + EM +   +
Sbjct: 342 NGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQ 401

Query: 346 ADVVTYTTLISGFCK------------------------------------SRKIDRCYE 369
            +  T++ +I  FCK                                      K+D    
Sbjct: 402 PNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANL 461

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           IL  M  +G  P++ TY  +++ H  K  + E +    +M   GC PD    N  I    
Sbjct: 462 ILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLL 521

Query: 430 KLGELKE 436
           K G   E
Sbjct: 522 KAGMPSE 528



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARM 189
           PN V     Y ++I    K  +     A+  +M      P  +T   + +L+  +  A  
Sbjct: 297 PNVV----TYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVT---YNVLINGYGKAGN 349

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTS 248
           +  A+ V  +M    C PD   F  L+D  C+   + +A + + EM + + +P+   F+ 
Sbjct: 350 MGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSI 409

Query: 249 LLYGWCKEGKLVEAKYVLVQMK-DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           ++  +CK+ +  EA   L ++       P   + N ++    + GK+ +A  +L EM  K
Sbjct: 410 IILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGK 469

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS---RKI 364
           GC P+  +YT+LI   C   ++ EA   F +M  +GC  D +T  + I    K+    ++
Sbjct: 470 GCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEV 529

Query: 365 DRCYEI 370
           DR  +I
Sbjct: 530 DRIMKI 535


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 228/522 (43%), Gaps = 55/522 (10%)

Query: 95  LQHSGVVLRP----GLTERVINR--CGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSL 148
           ++ +G VL      GL   +I    CG+A  + YR  +    +P    S   Y AL+ +L
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEV-YRRMVSEGLKP----SLKTYSALMVAL 237

Query: 149 SKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE 206
            K R    V  L++EM     +P + T   F I +R    A  + +A E+   M   GC 
Sbjct: 238 GKKRDSEMVMVLLKEMEDLGLRPNVYT---FTICIRVLGRAGKIDEAYEIFRRMDDEGCG 294

Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYV 265
           PD   +  L+DALC    ++ A +LF +M+    KP    + +LL  +   G L   K  
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEF 354

Query: 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
             QM+  G+ PD+V +  L+    +     +AF     MR++G  PN ++Y  LI  L R
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414

Query: 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN--- 382
             ++E+A +    ME  G +    TY T I  F KS +  +  E  + M  +GI+PN   
Sbjct: 415 AGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474

Query: 383 --------------------------------QLTYLHIMLAHEKKEELEECVELMGEMR 410
                                            +TY  +M  + K  +++E V L+ EM 
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           + GC PDV   N +I    K G + EA  +++ M+   LSP   ++  ++ G   +G + 
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQ 594

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A E F+ M+ +    +P   +   LL+   +  +VE+A  ++S +    C+ +V  +  
Sbjct: 595 KAIELFESMIXKK--CSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNT 652

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            I+ L     V  A  +    +   + P   T   L+ GL K
Sbjct: 653 VIYGLIKENKVNHAFWF-FHQLKKSMHPDHVTICTLLPGLVK 693



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 228/511 (44%), Gaps = 40/511 (7%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           Y+   S+ P  +H+ +    +++ L    K   + A+ E M+K+  +    + ++ + + 
Sbjct: 108 YFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRR-DLDTYLTIFKA 166

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS 242
            +    +++   VL++M K G   + + +  L+  L ++    EA +++  M  E  KPS
Sbjct: 167 LSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPS 226

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           L+ +++L+    K+        +L +M+D G  P++  +   +    + GK+ +A+E+ +
Sbjct: 227 LKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFR 286

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV------------------------- 337
            M  +GC P+  +YTVLI ALC   ++E A   FV                         
Sbjct: 287 RMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFG 346

Query: 338 ----------EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
                     +ME  G   DVVT+T L+   CK+R  D  +   D M ++GILPN  TY 
Sbjct: 347 DLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYN 406

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
            ++    +   +E+ ++L+  M  +G  P    Y   I    K GE  +AV  + +M+A 
Sbjct: 407 TLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAK 466

Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507
            + P   +    ++     G L EA   F  +   GL  AP   T   ++    +  +V+
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL--APDSVTYNMMMKCYSKVGQVD 524

Query: 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567
            A ++ S ++  GCE +V      I SL+  G V EA      M D  + P   T+  L+
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLL 584

Query: 568 RGLKKLYNRQIAAEITEK-VRKMAAERQITF 597
            GL K    Q A E+ E  + K  +   I+F
Sbjct: 585 SGLGKEGRVQKAIELFESMIXKKCSPNTISF 615



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 187/367 (50%), Gaps = 8/367 (2%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           ++++  D G+L      W+  + + Y+     +  L+  L K R F   +A  + MRK+ 
Sbjct: 338 LLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P L T    +  + R   A  ++ A+++LD M   G +P  + +   +D   K+    
Sbjct: 398 ILPNLHTYNTLICGLLR---AGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETG 454

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A + F++M+ +   P++    + LY   + G+L EAK +   +++ G  PD V YN ++
Sbjct: 455 KAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMM 514

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
             Y+++G++ +A  LL EM R GC+P+      LI +L +  +++EA + F  M+     
Sbjct: 515 KCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             VVTY TL+SG  K  ++ +  E+ +SMI +   PN +++  ++    K +E+E  +++
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKM 634

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             +M  + C PDV  YN VI    K  ++  A   +++++  S+ P   +   ++ G + 
Sbjct: 635 FSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTICTLLPGLVK 693

Query: 466 QGCLIEA 472
            G + +A
Sbjct: 694 CGQIGDA 700



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 161/320 (50%), Gaps = 8/320 (2%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  LI  L ++      W L ++M+     P   T   F +L+     +  + +  E+  
Sbjct: 791  YNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFT---FNMLLAVHGKSGKITELFELYK 847

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEG 257
            EM    C+PD   +  ++ +L K++++ +A   F D +   F+P+ R +  L+ G  K G
Sbjct: 848  EMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVG 907

Query: 258  KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            +L EA  +  +M D G +P+  ++N L++GY ++G    A +L K M  +G  P+  SYT
Sbjct: 908  RLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYT 967

Query: 318  VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +L+  LC   +++EA   F E++ +G + D + Y  +I+G  KS++++    + + M  R
Sbjct: 968  ILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNR 1027

Query: 378  GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE- 436
            GI+P+  TY  +ML       +E+   +  E++  G  PDV  YN +IR    L E  E 
Sbjct: 1028 GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIR-GYSLSENPEH 1086

Query: 437  AVNVWNEMEAASLSPGTDSF 456
            A  V+  M     +P   ++
Sbjct: 1087 AYTVYKNMMVDGCNPNIGTY 1106



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 198/473 (41%), Gaps = 46/473 (9%)

Query: 140  VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            V  +LI SL K  +    W + + M+  K  P ++T   +  L+        V+KAIE+ 
Sbjct: 544  VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVT---YNTLLSGLGKEGRVQKAIELF 600

Query: 198  DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKE 256
            + M    C P+   F  LLD  CKN  V+ A K+F +M     KP +  + +++YG  KE
Sbjct: 601  ESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKE 660

Query: 257  GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK-------------- 302
             K+  A +   Q+K +   PD V    LL G  + G++ DA  + +              
Sbjct: 661  NKVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSF 719

Query: 303  ----------------------EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
                                  E+   G     +    L++ LC+ ++   A + F +  
Sbjct: 720  WEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFT 779

Query: 341  RS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
            +  G    + +Y  LI    +    ++ +++   M   G  P+  T+  ++  H K  ++
Sbjct: 780  KKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKI 839

Query: 400  EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
             E  EL  EM    C PD   YN+VI    K   L +A++ + ++ ++   P   ++  +
Sbjct: 840  TELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL 899

Query: 460  VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
            + G    G L EA   F+EM   G    P       L+N   +    E A  ++  +V +
Sbjct: 900  IDGLAKVGRLEEAMRLFEEMSDYG--CKPNCAIFNILINGYGKIGDTETACQLFKRMVNE 957

Query: 520  GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G   ++ ++TI +  L   G V EA  Y  ++    + P    + +++ GL K
Sbjct: 958  GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 184/386 (47%), Gaps = 18/386 (4%)

Query: 190  VKKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHF 246
            + KAI   +E+   G C  D F+   L+  LCK+     A ++FD+  ++    P+L  +
Sbjct: 733  MDKAIIFAEELVLNGICREDSFLIP-LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASY 791

Query: 247  TSLLYGWCKEGKLVEAKY------VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
              L+      G+L+E  Y      +   MK+ G  PD   +N LL+ + + GK+T+ FEL
Sbjct: 792  NCLI------GELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 301  LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             KEM  + C P+A +Y ++I +L +   +++A   F ++  S       TY  LI G  K
Sbjct: 846  YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 361  SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              +++    + + M   G  PN   +  ++  + K  + E   +L   M   G  PD+ +
Sbjct: 906  VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKS 965

Query: 421  YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
            Y +++   C  G + EA+  +NE+++  L P   ++  +++G      + EA   + EM 
Sbjct: 966  YTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR 1025

Query: 481  GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             RG++  P   T  +L+ +L  A  VE AK ++  +   G E +V+ +   I     + +
Sbjct: 1026 NRGIV--PDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSEN 1083

Query: 541  VKEACSYCLDMMDADVMPQPDTFAKL 566
             + A +   +MM     P   T+A+L
Sbjct: 1084 PEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 3/366 (0%)

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           M+++A E   +M K+   P       LL  L K      + K F +M     K S+  + 
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            ++   CKEG L  A+ +  QMK+AGF PDIV YN+L+ G+ ++G + +   + ++M+  
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 120

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
            CDP+  +Y  LI   C+ E+M +A     EM+ +G + +VVTY+T I  FCK   +   
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 180

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            +    M +  + PN+ TY  ++ A+ K   L E ++L+ E+ + G   +V  Y  ++  
Sbjct: 181 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDG 240

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G +KEA  V+  M  A ++P  +++  +VHGF+    +  A +  KEM  + +   
Sbjct: 241 LCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI--K 298

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P       +L  L    ++E AK +   I   G   N   +T  + + F +G   EA + 
Sbjct: 299 PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTL 358

Query: 548 CLDMMD 553
             +M+D
Sbjct: 359 LEEMLD 364



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 212/457 (46%), Gaps = 64/457 (14%)

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G +   F +  ++D LCK   ++ A  LF +M+E  F P +  + SL+ G  K G
Sbjct: 46  DMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLG 105

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L E   +  QMKDA  +PD++ YN L++ + +  +M  AFE L EM+  G  PN  +Y+
Sbjct: 106 LLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYS 165

Query: 318 VLIQALCRMEKMEEANRAFVEMER-----------------------------------S 342
             I A C+   ++EA + FV+M R                                   +
Sbjct: 166 TFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA 225

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G + +VVTYT L+ G C+  ++    E+  +M+  G+ PNQ TY  ++    K +E+E  
Sbjct: 226 GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA 285

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACK----------LGELKEA-VN----VWNEMEAA 447
            +++ EM++    PD+  Y  ++   C           +GE+KE+ +N    ++  +  A
Sbjct: 286 KDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDA 345

Query: 448 SLSPG--TDSFVVM------VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
               G  T++  ++      V G     C   A + F EM+ +G++  P      AL++ 
Sbjct: 346 YFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMM--PDKIAYTALIDG 403

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            ++   ++ A ++   ++  G EL+++A+T  I  L  +G V++A +   +M+   V+P 
Sbjct: 404 NMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPD 463

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
              +  L   +KK Y      E  E   +MA    IT
Sbjct: 464 EVVYMCL---IKKYYALGKVDEALELQNEMAKRGMIT 497



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 185/374 (49%), Gaps = 29/374 (7%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ALI    K  +    +  + EM+    KP ++T   F+     F    M+++AI+  
Sbjct: 128 TYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFI---DAFCKEGMLQEAIKFF 184

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKE 256
            +M +    P+EF +  L+DA CK  ++ EA KL +E ++   K ++  +T+LL G C+E
Sbjct: 185 VDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEE 244

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G++ EA+ V   M +AG  P+   Y  L+ G+ +  +M  A ++LKEM+ K   P+   Y
Sbjct: 245 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 304

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKI------------ 364
             ++  LC   ++EEA     E++ SG   + V YTTL+  + KS +             
Sbjct: 305 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 364

Query: 365 -------DRCYEI----LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
                  + C+E+     D M+ +G++P+++ Y  ++  + K   L+E + L   M +IG
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
              D+  Y  +I      G++++A N+ +EM    + P    ++ ++  +   G + EA 
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 484

Query: 474 EYFKEMVGRGLLSA 487
           E   EM  RG+++ 
Sbjct: 485 ELQNEMAKRGMITG 498



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 141/299 (47%), Gaps = 6/299 (2%)

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A E   +MR+    P   S   L+  L ++ + + + + F +M  +G +  V TY  
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +I   CK   ++    +   M + G  P+ +TY  ++  H K   L+EC+ +  +M+   
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C PDV  YN +I   CK   + +A    +EM+A  L P   ++   +  F  +G L EA 
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           ++F +M  R +   P   T  +L+++  +A  +  A  +   I+  G +LNV  +T  + 
Sbjct: 182 KFFVDM--RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 239

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL----YNRQIAAEITEKVRK 588
            L   G +KEA      M++A V P  +T+  L+ G  K     Y + I  E+ EK  K
Sbjct: 240 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 298



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 146/308 (47%), Gaps = 25/308 (8%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y +LI +  K         L+EE+ +   +L       +L       RM K+A EV   
Sbjct: 198 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRM-KEAEEVFRA 256

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G  P++  +  L+    K   ++ A  +  EM+E+  KP L  + ++L+G C E +
Sbjct: 257 MLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESR 316

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR------------ 306
           L EAK ++ ++K++G   + V+Y  L+  Y + G+ T+A  LL+EM              
Sbjct: 317 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFE 376

Query: 307 -----------KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
                      KG  P+  +YT LI    +   ++EA      M   G E D+  YT LI
Sbjct: 377 VAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALI 436

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G   S ++ +   +LD MI +G+LP+++ Y+ ++  +    +++E +EL  EM K G +
Sbjct: 437 WGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 496

Query: 416 PDVSNYNV 423
             +S++ V
Sbjct: 497 TGLSDHAV 504


>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g43820
 gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 546

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 199/424 (46%), Gaps = 13/424 (3%)

Query: 91  LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
           ++ +L   G+ L   +   V+NR   +G     ++ WA ++P        Y  ++++L +
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163

Query: 151 MRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208
            + F  +  +++ M  E   P L   E   I M  F     V++AIE+ +E   +G +  
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDL---ECLTIAMDSFVRVHYVRRAIELFEESESFGVKCS 220

Query: 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268
              F  LL  LC+ S V  A  +F+  +         +  ++ GW K G++ E + VL +
Sbjct: 221 TESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKE 280

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           M ++GF PD + Y++L+ G  + G++ D+ E+   ++ KG  P+AN Y  +I        
Sbjct: 281 MVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARD 340

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ---LT 385
            +E+ R +  M    CE ++ TY+ L+SG  K RK+    EI + M+ RG+LP      +
Sbjct: 341 FDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTS 400

Query: 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
           +L  + ++         + +  + RK GC    S Y ++++   + G+    +NVW+EM+
Sbjct: 401 FLKPLCSYGPP---HAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQ 457

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
            +      + +  +V G    G L  A    +E + +G    P       L + L+ + K
Sbjct: 458 ESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGF--CPNRFVYSRLSSKLMASNK 515

Query: 506 VEMA 509
            E+A
Sbjct: 516 TELA 519



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 145/360 (40%), Gaps = 34/360 (9%)

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           VL  M   G  PD+      +  + ++  +  A EL +E    G   +  S+  L++ LC
Sbjct: 173 VLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTESFNALLRCLC 232

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
               +  A   F   ++     D  +Y  +ISG+ K  +++   ++L  M++ G  P+ L
Sbjct: 233 ERSHVSAAKSVF-NAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCL 291

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           +Y H++    +   + + VE+   ++  G VPD + YN +I       +  E++  +  M
Sbjct: 292 SYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRM 351

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS---------------APQ 489
                 P  +++  +V G +    + +A E F+EM+ RG+L                 P 
Sbjct: 352 LDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPP 411

Query: 490 YGTL------------------KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           +  +                  K LL  L R  K  M  +VW  +   G   +V  +   
Sbjct: 412 HAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYI 471

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
           +  L   GH++ A     + M     P    +++L   L      ++A ++  K++K  A
Sbjct: 472 VDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLFLKIKKARA 531



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 2/232 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI+ L +  +      + + + K K  +    V+  ++  F SAR   +++     M
Sbjct: 293 YSHLIEGLGRTGRINDSVEIFDNI-KHKGNVPDANVYNAMICNFISARDFDESMRYYRRM 351

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
               CEP+   +  L+  L K   V +A ++F+EM  R   P+    TS L   C  G  
Sbjct: 352 LDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPP 411

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A  +  + + AG       Y  LL   ++ GK      +  EM+  G   +   Y  +
Sbjct: 412 HAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYI 471

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  LC +  +E A     E  R G   +   Y+ L S    S K +  Y++ 
Sbjct: 472 VDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLF 523



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 6/196 (3%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           YR  +    +PN     + Y  L+  L K RK      + EEM   +  L TT +    +
Sbjct: 348 YRRMLDEECEPNL----ETYSKLVSGLIKGRKVSDALEIFEEMLS-RGVLPTTGLVTSFL 402

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP 241
           +   S      A+ +  +  K GC   E  +  LL  L +         ++DEM+E   P
Sbjct: 403 KPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYP 462

Query: 242 S-LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           S +  +  ++ G C  G L  A  V+ +    GF P+  VY+ L S      K   A++L
Sbjct: 463 SDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKL 522

Query: 301 LKEMRRKGCDPNANSY 316
             ++++     NA S+
Sbjct: 523 FLKIKKARATENARSF 538


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 209/462 (45%), Gaps = 12/462 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           V  AL+  L K  +      L++EM    P ++    F +++      + + +A  VL+ 
Sbjct: 11  VCTALLNGLCKTGQLDRAMLLLDEM-PCSPDMVA---FTVVINGLCREKRLDEAFSVLER 66

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
             + GCEPD   +   +D LCK   V +A +L  +M E +  P+   +T+L+ G  K G+
Sbjct: 67  AVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGR 126

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EA  +L QM + G  P +  Y  ++ G ++ G++ +A  +  +M   GC P+A  YT 
Sbjct: 127 LDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTA 186

Query: 319 LIQALCRMEKMEEANRAFVEMERSGC----EADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           LI  L ++ K++EA     +M  +GC    E DVV +  +I   C S  ++      D +
Sbjct: 187 LISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDEL 246

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
               +     T+  ++ A  K E  EE +  + +M +  C P +  Y  ++    KLG L
Sbjct: 247 -DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRL 305

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
            EA+    E       P   ++  ++ G    G + E CE F EM  RG    P   T  
Sbjct: 306 DEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY--EPDAVTYA 363

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           AL++  ++A+ +  A  V+  ++  G  ++   + I +  L   G V EA +  L M + 
Sbjct: 364 ALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEER 423

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596
             +    T++ LM G     N   A E+  ++     E  + 
Sbjct: 424 GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLV 465



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 210/470 (44%), Gaps = 43/470 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y AL+  L K  +     A++E+M  EK    T + + +++   + A  V++A  +  +M
Sbjct: 114 YTALVDGLLKAGRLDEAMAILEQM-VEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDM 172

Query: 201 PKYGCEPDEFVFGCLLDAL---------------------------------------CK 221
              GC PD FV+  L+  L                                       C 
Sbjct: 173 LGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCA 232

Query: 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
           + ++++A   FDE+ +    +   F  L+   CK  +  EA   + +M +    P +  Y
Sbjct: 233 SGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTY 292

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
            +L+ G+ ++G++ +A   LKE   +G  P+A +YT +I  LC++ ++EE    F EM  
Sbjct: 293 TSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRN 352

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G E D VTY  LI GF K++ I + + +   M+Q G + + +TY  I+    K   + E
Sbjct: 353 RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAE 412

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                  M + GCV  V  Y+ ++   C  G +  AV ++  M      P   S+ +++ 
Sbjct: 413 AYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIR 472

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL-RAQKVEMAKDVWSCIVTKG 520
           G    G L +A  YF++++ R L   P   T  + L+ L  R   V    +++  +V++G
Sbjct: 473 GLCRAGKLAKAYFYFEKLLQRRL--CPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQG 530

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              N+++++I +  +   G ++       +M+   V P    F  L+R L
Sbjct: 531 TSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 213/472 (45%), Gaps = 91/472 (19%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEM------RKEKPQLITTEVFVILMRRFASARMVKKA 193
           VY ALI  L+K+ K       + +M      R  +P ++   +  +++R+  ++  ++ A
Sbjct: 183 VYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVV---IHNLVIRQLCASGNLEDA 239

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           +   DE+     +   F F  L+ ALCK    +EA     +M ER   P+L  +TSL+ G
Sbjct: 240 LAYFDELDD-SLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDG 298

Query: 253 WCKEGKLVEAKYVLVQMKDA---GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + K G+L EA   L+Q+K+A   GF PD V Y +++ G  ++G++ +  E   EMR +G 
Sbjct: 299 FLKLGRLDEA---LLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY 355

Query: 310 DPNANSYTVLIQA-----------------------------------LCRMEKMEEANR 334
           +P+A +Y  LI                                     LC+  ++ EA  
Sbjct: 356 EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYA 415

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM---- 390
            F+ ME  GC A VVTY+ L+ GFC    +    E+   M+ RG  PN ++Y  I+    
Sbjct: 416 TFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLC 475

Query: 391 -----------------------------LAH---EKKEELEECVELMGEMRKIGCVPDV 418
                                          H   ++ + + + VEL   M   G  P++
Sbjct: 476 RAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNL 535

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
            +Y++++   C+ G L+  + +++EM +  ++P    F  ++      G + EA E F+E
Sbjct: 536 HSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRE 595

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +  R   SAP   +  +LL++L R +++E A+ +   +  +GC    Y  T+
Sbjct: 596 LERR---SAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAPRHYDLTV 644



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 166/343 (48%), Gaps = 10/343 (2%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           M +R     R  T+LL G CK G+L  A  +L +M  +   PD+V +  +++G  +  ++
Sbjct: 1   MIDRKLVDTRVCTALLNGLCKTGQLDRAMLLLDEMPCS---PDMVAFTVVINGLCREKRL 57

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            +AF +L+   R GC+P+  +Y V I  LC+ E++++A +   +M+   C    VTYT L
Sbjct: 58  DEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTAL 117

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           + G  K+ ++D    IL+ M+++G  P   TY  ++    K   +EE   +  +M   GC
Sbjct: 118 VDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGC 177

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM----VHGFLGQGCLI 470
            PD   Y  +I    K+G+L EA+   N+M     + G +  VV+    +      G L 
Sbjct: 178 RPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLE 237

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           +A  YF E+     L+   + T   L+ +L +A++ E A      +  + C   ++ +T 
Sbjct: 238 DALAYFDELDDSLDLT---HFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTS 294

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            +      G + EA     + ++   +P   T+  ++ GL KL
Sbjct: 295 LVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKL 337


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 176/349 (50%), Gaps = 6/349 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  + K+ +  A   L+  + +   +P ++   ++ +++ R     +V +A ++  
Sbjct: 166 YGILINGVCKIGETRAAIRLLRRIERWSIRPNVV---IYSMIIDRLCKDTLVDEAYDLYT 222

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+   C    +  A  L +EM  E   P +  +T L+   CKEG
Sbjct: 223 EMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEG 282

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA+ VL  M  A    D+VVY+ L+ GY  + ++ +A  +   M + G  P+ + Y+
Sbjct: 283 KVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYS 342

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I  LC++++++EA   F E+ +     D VTYT+LI   CKS +I   +++ D M+ R
Sbjct: 343 IMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDR 402

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ +TY +++ A  K   L+  + L  +M+     P+V  + +++   CK+G LK A
Sbjct: 403 GQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNA 462

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           +  + ++          ++ VM++G   +G L EA      M   G +S
Sbjct: 463 LEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCIS 511



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 205/425 (48%), Gaps = 9/425 (2%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  IT      LM+       VK+A+   D++   G       +G L++ +CK    + 
Sbjct: 125 QPNTITLNT---LMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRA 181

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A +L   + R   +P++  ++ ++   CK+  + EA  +  +M   G  PD+V Y+ L+S
Sbjct: 182 AIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVS 241

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G+  +G++  A +LL EM  +  +P+  +YT+L+ ALC+  K++EA      M ++    
Sbjct: 242 GFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNL 301

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DVV Y+TL+ G+C   +++    +  +M Q G+ P+   Y  ++    K + ++E + L 
Sbjct: 302 DVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLF 361

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            E+ +   VPD   Y  +I   CK G +    ++++EM      P   ++  ++      
Sbjct: 362 EEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKN 421

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G L  A   F +M  + +   P   T   LL+ L +  +++ A + +  ++TKG  LNV 
Sbjct: 422 GHLDRAIALFNKMKDQAI--RPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVR 479

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            +T+ I+ L   G + EA +    M D   +    TF  ++R     +++    +  + V
Sbjct: 480 TYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRA---FFDKDENDKAEKLV 536

Query: 587 RKMAA 591
           R+M A
Sbjct: 537 REMIA 541



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 174/362 (48%), Gaps = 11/362 (3%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRF 184
           W S +PN V    +Y  +I  L K       + L  EM  +   P ++T   + IL+  F
Sbjct: 192 W-SIRPNVV----IYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT---YSILVSGF 243

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSL 243
                + +AI++L+EM      PD + +  L+DALCK   VKEA  +   M +      +
Sbjct: 244 CIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDV 303

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             +++L+ G+C   ++  AK V   M   G  PD+  Y+ +++G  ++ ++ +A  L +E
Sbjct: 304 VVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEE 363

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           + +K   P+  +YT LI  LC+  ++      F EM   G   DV+TY  LI   CK+  
Sbjct: 364 IHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGH 423

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +DR   + + M  + I PN  T+  ++    K   L+  +E   ++   G   +V  Y V
Sbjct: 424 LDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTV 483

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           +I   CK G L EA+ + + ME         +F +M+  F  +    +A +  +EM+ RG
Sbjct: 484 MINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543

Query: 484 LL 485
           LL
Sbjct: 544 LL 545



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 191/395 (48%), Gaps = 3/395 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA-AKLFDEMRER 238
           ++    + +    AI +  +M     EPD F    +++  C    V  A + +   ++  
Sbjct: 64  ILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLG 123

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           ++P+     +L+ G C EGK+ EA     ++   GF    + Y  L++G  ++G+   A 
Sbjct: 124 YQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAI 183

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            LL+ + R    PN   Y+++I  LC+   ++EA   + EM   G   DVVTY+ L+SGF
Sbjct: 184 RLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGF 243

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C   +++R  ++L+ M+   I P+  TY  ++ A  K+ +++E   ++  M K     DV
Sbjct: 244 CIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDV 303

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y+ ++   C + E+  A  V+  M    ++P    + +M++G      + EA   F+E
Sbjct: 304 VVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEE 363

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           +  + ++  P   T  +L++ L ++ ++    D++  ++ +G   +V  +   I +L  N
Sbjct: 364 IHQKNMV--PDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKN 421

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
           GH+  A +    M D  + P   TF  L+ GL K+
Sbjct: 422 GHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKV 456



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 153/333 (45%), Gaps = 4/333 (1%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
           P   HF  +L       +   A  +  QM+ +  EPD    N +++ +   G++  AF  
Sbjct: 56  PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           + ++ + G  PN  +   L++ LC   K++EA R   ++   G     ++Y  LI+G CK
Sbjct: 116 VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCK 175

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             +      +L  + +  I PN + Y  I+    K   ++E  +L  EM   G  PDV  
Sbjct: 176 IGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT 235

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y++++   C +G+L  A+++ NEM   +++P   ++ ++V     +G + EA      MV
Sbjct: 236 YSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMV 295

Query: 481 GRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              + L    Y T   L++      +V  AK V+  +   G   +V+ ++I I+ L    
Sbjct: 296 KACVNLDVVVYST---LMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIK 352

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            V EA +   ++   +++P   T+  L+  L K
Sbjct: 353 RVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCK 385



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 124/274 (45%), Gaps = 2/274 (0%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA      M      P+   +  ++ +L  +++   A   + +ME S  E D  T   +I
Sbjct: 41  DAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIII 100

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           + FC   ++   +  +  +++ G  PN +T   +M     + +++E +    ++   G  
Sbjct: 101 NCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFR 160

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
               +Y ++I   CK+GE + A+ +   +E  S+ P    + +++        + EA + 
Sbjct: 161 LSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDL 220

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           + EMVG+G+  +P   T   L++      ++  A D+ + +V +    ++Y +TI + +L
Sbjct: 221 YTEMVGKGI--SPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDAL 278

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
              G VKEA +    M+ A V      ++ LM G
Sbjct: 279 CKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDG 312


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 248/520 (47%), Gaps = 12/520 (2%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V +I R++    S  PK E  +++    L+P     V+ R  D   +  +++ WA +Q  
Sbjct: 147 VREIGRLIGLRSSWNPKHEGQMRNLLRSLKPSQVCAVL-RSQDDERVALKFFYWADRQWR 205

Query: 134 YVHSYDVYRALIKSLSKMRKF-GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           Y H   VY ++++ LSK +   GA   L+  + K +    T E F+ +M  ++ A  ++ 
Sbjct: 206 YRHDPMVYYSMLEVLSKTKMCQGARRVLV--LMKRRGIYRTPEAFLRVMVSYSRAGQLRD 263

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLY 251
           A++VL  M + G EP+  +    +D   + + +++A +  + M+     P++  +  ++ 
Sbjct: 264 ALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIR 323

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCD 310
           G+C   ++ EA  +L  M   G  PD V Y  ++    +  ++ +  +L+K+M ++ G  
Sbjct: 324 GYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV 383

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            +  +Y  LI  L + +  +EA     + E  G   D V Y+ ++   CK  ++    ++
Sbjct: 384 RDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDL 443

Query: 371 LDSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           ++ M+ +G   P+ +TY  ++    +  E+++  +L+  M   G  P+  +Y  ++   C
Sbjct: 444 INEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLC 503

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           + G+  EA  + N  E    SP + ++ V++HG   +G L EAC+  +EMV +G    P 
Sbjct: 504 RTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPV 563

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
              +  LL SL R  +   A+      + KGC +NV  +T  IH    N  +  A S   
Sbjct: 564 --EINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 621

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           DM   +      T+  L+  L K   +   AE TE ++KM
Sbjct: 622 DMYLINKHADVFTYTTLVDALGK---KGRIAEATELMKKM 658



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 186/415 (44%), Gaps = 74/415 (17%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  ++R +     V++AIE+LD+MP  GC PD+  +  ++  LCK   + E 
Sbjct: 313 PNVVT---YNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEV 369

Query: 229 AKLFDEMRER-------------------------------------FKPSLRHFTSLLY 251
             L  +M +                                      F+     ++++++
Sbjct: 370 RDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVH 429

Query: 252 GWCKEGKLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
             CKEG++ EAK ++ +M   G   PD+V Y  +++G+ ++G++  A +LL+ M   G  
Sbjct: 430 ALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYK 489

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  SYT L+  LCR  K  EA       E      + +TY+ L+ G  K  K+    ++
Sbjct: 490 PNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDV 549

Query: 371 LDSMIQRGILPNQLTYLHIML--------AHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +  M+ +G  P  +  ++++L         HE ++ +EEC+         GC  +V N+ 
Sbjct: 550 VREMVLKGFFPGPVE-INLLLQSLCRDGRTHEARKFMEECL-------NKGCAINVVNFT 601

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            VI   C+  EL  A++V ++M   +      ++  +V     +G + EA E  K+M+ +
Sbjct: 602 TVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHK 661

Query: 483 GLLSAP--------------QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
           G+   P              +   L A+L  ++  QK    K +++ ++ K C L
Sbjct: 662 GIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMILRQK---CKTIYNQVIEKLCGL 713



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 159/319 (49%), Gaps = 5/319 (1%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFG-AVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           +K+   V     Y  LI  L+K      A+W L +   +EK   I    +  ++      
Sbjct: 377 AKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDA--EEKGFRIDKVGYSAIVHALCKE 434

Query: 188 RMVKKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
             + +A ++++EM   G C PD   +  +++  C+   V +A KL   M    +KP+   
Sbjct: 435 GRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVS 494

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T+LL G C+ GK +EA+ ++   ++  + P+ + Y+ L+ G  + GK+++A ++++EM 
Sbjct: 495 YTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMV 554

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KG  P      +L+Q+LCR  +  EA +   E    GC  +VV +TT+I GFC++ ++D
Sbjct: 555 LKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELD 614

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               +LD M       +  TY  ++ A  KK  + E  ELM +M   G  P    Y  VI
Sbjct: 615 AALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVI 674

Query: 426 RLACKLGELKEAVNVWNEM 444
              C++ ++ + V +  +M
Sbjct: 675 HRYCQMEKVDDLVAILEKM 693



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 45/289 (15%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK---PQLITTEVFVILMRRFASA 187
           +PN V     Y AL+  L +  K      +M  M +E+   P  IT   + +LM      
Sbjct: 489 KPNTVS----YTALLNGLCRTGKSLEAREMMN-MSEEQWWSPNSIT---YSVLMHGLRKE 540

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHF 246
             + +A +V+ EM   G  P       LL +LC++    EA K  +E + +    ++ +F
Sbjct: 541 GKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNF 600

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T++++G+C+  +L  A  VL  M       D+  Y  L+    + G++ +A EL+K+M  
Sbjct: 601 TTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLH 660

Query: 307 KGCDPNANSYTVLIQALCRMEK---------------------------------MEEAN 333
           KG DP   +Y  +I   C+MEK                                 +EEA+
Sbjct: 661 KGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMILRQKCKTIYNQVIEKLCGLGKLEEAD 720

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           +   ++ R+   +D  T   L+ G+ K       Y++   M  R ++P+
Sbjct: 721 KLLGKVLRTASRSDAKTCYALMEGYLKIGVPLLAYKVACRMFNRNLIPD 769


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 198/399 (49%), Gaps = 7/399 (1%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           IL++   +     +A ++L  M + G  C PD   +  ++D   K   V +A  LF EM 
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +R   P L  ++S+++  CK   + +A+  L QM + G  PD   YNNL+ GY+  G+  
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWK 308

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A  + KEMRR+   P+  +   L+ +LC+  K++EA   F  M   G   DV +YT ++
Sbjct: 309 EAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIML 368

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G+     +    ++ D M+  GI P+  T+  ++ A+     L++ + +  EMR  G  
Sbjct: 369 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 428

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P V  Y  VI   C++G++ +A+  +N+M    + P   ++  ++ GF   G L++A E 
Sbjct: 429 PHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKEL 488

Query: 476 FKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
             E++  G+ L    +G+   ++N+L +  +V  A++++   V  G   +   + + +  
Sbjct: 489 ISEIMNNGMRLDIVFFGS---IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545

Query: 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
               G +++A      M+ A + P    +  L+ G  K+
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKI 584



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 190/410 (46%), Gaps = 6/410 (1%)

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           M+ + P + +   + I++  +A+   +    ++ D M   G  PD + F  L+ A     
Sbjct: 354 MKGQNPDVFS---YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCG 410

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            + +A  +F+EMR+   KP +  + +++   C+ GK+ +A     QM D G  PD   Y+
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYH 470

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+ G+   G +  A EL+ E+   G   +   +  +I  LC++ ++ +A   F      
Sbjct: 471 CLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNV 530

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   D V Y  L+ G+C   K+++   + D+M+  GI PN + Y  ++  + K   ++E 
Sbjct: 531 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG 590

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L  EM + G  P    YN++I    + G    A   ++EM  + ++    ++ +++ G
Sbjct: 591 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 650

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                C  EA   FKE+  R +       TL  ++  + + ++VE AKD+++ I   G  
Sbjct: 651 LFKNRCFDEAIFLFKEL--RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV 708

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                ++I I +L   G V+EA      M +A   P       ++R L K
Sbjct: 709 PCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLK 758



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 185/372 (49%), Gaps = 3/372 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F +L++ +A+  M+ KA+ + +EM  +G +P    +  ++ ALC+   + +A + F++M 
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           ++   P    +  L+ G+C  G L++AK ++ ++ + G   DIV + ++++   ++G++ 
Sbjct: 459 DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVM 518

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA  +       G  P+A  Y +L+   C + KME+A R F  M  +G E +VV Y TL+
Sbjct: 519 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 578

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G+CK  +ID    +   M+Q+GI P+ + Y  I+    +            EM + G  
Sbjct: 579 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIA 638

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +   Y++V+R   K     EA+ ++ E+ A ++     +   M+ G      + EA + 
Sbjct: 639 MNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDL 698

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F  +   GL+  P   T   ++ +LL+   VE A+D++S +   GCE +       +  L
Sbjct: 699 FASISRSGLV--PCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVREL 756

Query: 536 FSNGHVKEACSY 547
                +  A +Y
Sbjct: 757 LKKNEIVRAGAY 768



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 178/406 (43%), Gaps = 8/406 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LIK+ +          +  EMR    KP ++T    +  + R      +  A+E  +
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGK---MDDAMEKFN 455

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           +M   G  PD++ + CL+   C + S+ +A +L  E M    +  +  F S++   CK G
Sbjct: 456 QMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLG 515

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++++A+ +     + G  PD VVYN L+ GY  +GKM  A  +   M   G +PN   Y 
Sbjct: 516 RVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYG 575

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C++ +++E    F EM + G +   + Y  +I G  ++ +          M + 
Sbjct: 576 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 635

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N+ TY  ++    K    +E + L  E+R +    D+   N +I    +   ++EA
Sbjct: 636 GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 695

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +++  +  + L P   ++ +M+   L +G + EA + F  M   G    P    L  ++
Sbjct: 696 KDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAG--CEPDSRLLNHVV 753

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
             LL+  ++  A    S I  +   L      + +    S G  +E
Sbjct: 754 RELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCRE 799



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 38/264 (14%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P + +Y +L+    R  + E A   F ++ R+G   D +  + L+ GFC++++ D   E 
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTD---EA 167

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD ++ R                                 ++GCVPDV +YN++++  C 
Sbjct: 168 LDILLHR-------------------------------TPELGCVPDVFSYNILLKSLCN 196

Query: 431 LGELKEAVNVWNEM-EAASL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            G+  +A ++   M E  ++ SP   ++  ++ GF  +G + +AC+ FKEMV RG+   P
Sbjct: 197 QGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGI--PP 254

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  +++++L +A+ ++ A+     +V KG   + + +   I+   S G  KEA    
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVF 314

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
            +M    ++P       LM  L K
Sbjct: 315 KEMRRQSILPDVVALNTLMGSLCK 338


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 187/373 (50%), Gaps = 9/373 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM-RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +  L++ + +  K  +   + +EM R+  P  + T  F  LM     A  +  A  +   
Sbjct: 247 FNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVT--FNTLMSGMCKASDLNSANALRGL 304

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M K G  PD + +G  +  LCK   +++A ++F+EMRER   P+   FT+L+   CKEG 
Sbjct: 305 MAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGN 364

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +     +  +M   G + D+V YN L +G  ++  +  A ++++EMR  G  P+  +YT 
Sbjct: 365 VAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTT 424

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   C+  +++ A     EM   G   D VTYTTLISG  KS +      IL  M++ G
Sbjct: 425 LIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAG 484

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+  TY  ++ A  K  +++   +L+ EM+  G  P V  YNVV+   C LG++K A 
Sbjct: 485 LEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNAD 544

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + N M    + P   ++ +++ G    G + +A E  K    +G++S   +G   +L+N
Sbjct: 545 MLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDA-EELKS--AKGMVS--DFGLYTSLIN 599

Query: 499 SLLRAQKVEMAKD 511
             ++ +  +   D
Sbjct: 600 EFVKKKSTKSYHD 612



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 162/340 (47%), Gaps = 3/340 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           F +LMR    +  +  A  + DEM + G  P    F  L+  +CK S +  A  L   M 
Sbjct: 247 FNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMA 306

Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +    P +  + + + G CK G++ +A  +  +M++ G  P+ VV+  L+  + + G + 
Sbjct: 307 KAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVA 366

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
              EL +EM  +G   +  +Y  L   LCR+  ++ AN    EM  +G + D VTYTTLI
Sbjct: 367 AGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLI 426

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GFCK  ++D   E+   M   G+  +++TY  ++    K     +   ++ EM + G  
Sbjct: 427 DGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLE 486

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD + Y +VI   CK  ++K    +  EM+     PG  ++ V+++GF   G +  A   
Sbjct: 487 PDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADML 546

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
              M+  G+   P   T   LL+   +  KV  A+++ S 
Sbjct: 547 LNAMLNIGV--CPDDITYNILLDGHCKHGKVRDAEELKSA 584



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 144/310 (46%), Gaps = 2/310 (0%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA    +Q+ DAG  P+   +N L+    + GK+  A  +  EM R+G  P   ++  L+
Sbjct: 227 EAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLM 286

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             +C+   +  AN     M ++G   DV TY   + G CK+ +I    E+ + M +RG+ 
Sbjct: 287 SGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVN 346

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN + +  ++ AH K+  +   +EL  EM   G   D+  YN +    C++ +LK A ++
Sbjct: 347 PNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDI 406

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
             EM    L P   ++  ++ GF  +G L  A E  +EM   G+  A    T   L++ L
Sbjct: 407 VEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGV--ALDEVTYTTLISGL 464

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            ++ +   ++ +   ++  G E +   +T+ I +   N  VK       +M +    P  
Sbjct: 465 SKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGV 524

Query: 561 DTFAKLMRGL 570
            T+  +M G 
Sbjct: 525 VTYNVVMNGF 534



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 155/354 (43%), Gaps = 3/354 (0%)

Query: 217 DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
           D + +  SV EA   + ++ +    P  + F  L+    + GKL  A+ +  +M   G  
Sbjct: 217 DLMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVP 276

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P +V +N L+SG  +   +  A  L   M + G  P+  +Y   +Q LC+  ++++A   
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F EM   G   + V +TTLI   CK   +    E+   M  RGI  + + Y  +     +
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCR 396

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +L+   +++ EMR  G  PD   Y  +I   CK GEL  A+ +  EM    ++    +
Sbjct: 397 VRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVT 456

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ G    G  +++     EM+  GL   P   T   ++++  +   V+    +   
Sbjct: 457 YTTLISGLSKSGRSVDSERILCEMMEAGL--EPDNTTYTMVIDAFCKNSDVKTGFKLLKE 514

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  KG +  V  + + ++     G +K A      M++  V P   T+  L+ G
Sbjct: 515 MQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDG 568


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 180/349 (51%), Gaps = 15/349 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+ +  K   +     L++EMR +  +P ++T   + +L+    S   V +A++VL+
Sbjct: 198 YSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVT---YNVLINAMCSQGDVGEALKVLN 254

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            +P YGC+PD   +  +L +LC +   +EA KL  +M      P    F +++   C++G
Sbjct: 255 SLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKG 314

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE----MRRKGCDPNA 313
            +  A  VL QM + G  PDI+ Y++++ G  +  ++ +A +LLKE    M  K C P+ 
Sbjct: 315 FVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQ 374

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF-CKSRKIDRCYEILD 372
            ++  +I +LC+    + A +   EM   GC  D+ TY  ++ GF CKS K +   ++L+
Sbjct: 375 VTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLN 434

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M+  G+ P+  TY  +     +++E+E  + +   ++ +G  PD   YN ++   CK  
Sbjct: 435 LMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKW 494

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481
               A++ +  M +    P   +++++V G   +G L EA    KE++G
Sbjct: 495 RTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEA----KELLG 539



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 177/432 (40%), Gaps = 47/432 (10%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL+++  +   V  A  V++ +   G       +  +++  C+  ++  A ++ D +   
Sbjct: 101 ILIKKLCADGRVADAERVVEAL---GPSATIITYNTMVNGYCRAGNIDAARRMIDSVP-- 155

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           F P    +  L+   C  G +++A  V   M   G  P +V Y+ LL    +      A 
Sbjct: 156 FAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAV 215

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            LL EMR KGC+P+  +Y VLI A+C    + EA +    +   GC+ D VTYT ++   
Sbjct: 216 VLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSL 275

Query: 359 CKSRK-----------------------------------IDRCYEILDSMIQRGILPNQ 383
           C S +                                   + R  ++L  M + G  P+ 
Sbjct: 276 CSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDI 335

Query: 384 LTYLHIMLAHEKKEELEECV----ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +TY  IM    K+  ++E +    EL+ EM    C+PD   +N +I   C+ G    A+ 
Sbjct: 336 ITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIK 395

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLI-EACEYFKEMVGRGLLSAPQYGTLKALLN 498
           V +EM      P   ++  +V GFL + C   EA +    MV  GL   P   T K+L  
Sbjct: 396 VVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGL--CPDTTTYKSLAF 453

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L R  ++E A  ++  +   G   +   +   +  L        A  +   M+    MP
Sbjct: 454 GLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMP 513

Query: 559 QPDTFAKLMRGL 570
              T+  L+ G+
Sbjct: 514 DESTYIILVEGI 525



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 142/310 (45%), Gaps = 14/310 (4%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPNYVHSYD--VYRALIKSLSKMRKFGAVWALMEEMRKE 167
           +IN     G++G    +  S  P+Y    D   Y  ++KSL    ++     L+ +M   
Sbjct: 236 LINAMCSQGDVGEALKVLNS-LPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSN 294

Query: 168 K--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
              P  +T   F  ++        V +A +VL +M ++GC PD   +  ++D LCK   V
Sbjct: 295 DCAPDEVT---FNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRV 351

Query: 226 KEAAKLFDEM-----RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
            EA KL  E+      +   P    F +++   C++G    A  V+ +M + G  PDI  
Sbjct: 352 DEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITT 411

Query: 281 YNNLLSGY-AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
           YN ++ G+  +  K  +A +LL  M   G  P+  +Y  L   L R ++ME A   F  +
Sbjct: 412 YNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRV 471

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           +  G   D + Y  ++ G CK  + D   +    M+  G +P++ TY+ ++     +  L
Sbjct: 472 QAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFL 531

Query: 400 EECVELMGEM 409
           EE  EL+G +
Sbjct: 532 EEAKELLGNL 541



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 18/344 (5%)

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N  L G  Q G++  A  L+  +   G DP      +LI+ LC   ++ +A R    +E 
Sbjct: 65  NRRLRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERV---VEA 121

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G  A ++TY T+++G+C++  ID    ++DS+      P+  TY  ++ A   +  + +
Sbjct: 122 LGPSATIITYNTMVNGYCRAGNIDAARRMIDSV---PFAPDTFTYNPLIRALCVRGCVLD 178

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
            + +  +M   GC P V  Y++++   CK    K+AV + +EM +    P   ++ V+++
Sbjct: 179 ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLIN 238

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
               QG + EA +    +   G    P   T   +L SL  +++ E A  + + + +  C
Sbjct: 239 AMCSQGDVGEALKVLNSLPSYG--CKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             +   +   I SL   G V  A      M +    P   T++ +M GL K   R++   
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCK--ERRVDEA 354

Query: 582 I-------TEKVRKMAAERQITFK-MYKRRGERDLKEKAKKQVD 617
           I        E V K     Q+TF  +     ++ L ++A K VD
Sbjct: 355 IKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVD 398


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 158/301 (52%), Gaps = 1/301 (0%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RER 238
           ++ R    + +  A+  ++EM   G +PD F++  +L  LC+   V+EA  LF++M ++R
Sbjct: 15  IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 74

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P++  + +L+ G CK  ++  A  +  +M   G+ P  V YN L+ G+ +   +  A 
Sbjct: 75  INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 134

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           ++  +M R  C PN  +YT LI  L +  K++ A      M + G   +V TY+ LI GF
Sbjct: 135 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 194

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK R++D  +++L+ M+ +GI P  +TY  ++ +  + ++LE+  +L   M +  C P V
Sbjct: 195 CKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 254

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN ++R  C   +L  A  ++ EM A    P   ++  +  G    G + EA E  ++
Sbjct: 255 VTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEK 314

Query: 479 M 479
           M
Sbjct: 315 M 315



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 157/314 (50%), Gaps = 4/314 (1%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M +Y   PD   +G +++ LCK   + +A    +EM  R  KP    +  +L G C+E K
Sbjct: 1   MARYA-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEK 59

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA+ +  +M      P++V YN L++G  +  ++  A+EL KEM  KG  P   SY  
Sbjct: 60  VEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   C+ + +  A   F +M RS C  +VVTYTTLI G  KS K+    E+LD M+++G
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 179

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + PN  TY  ++    K   ++E  +L+ +M   G  P V  YN+++   C+  +L++A 
Sbjct: 180 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAF 239

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++  M      P   ++  ++        L  A   + EM+ +G    P   T   L  
Sbjct: 240 KLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG--CPPDAITYDTLAW 297

Query: 499 SLLRAQKVEMAKDV 512
            L RA KV  A+++
Sbjct: 298 GLTRAGKVHEAQEL 311



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 160/314 (50%), Gaps = 6/314 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +++ L K ++     A +EEM  R  KP      ++  ++        V++A  + +
Sbjct: 12  YGPIVERLCKTKRIDDALATVEEMATRGIKPDAF---IYNFVLSGLCQEEKVEEARLLFE 68

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M K    P+   +  L++ LCK   ++ A +LF EM  + + P+   + +L+ G+CK+ 
Sbjct: 69  KMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKK 128

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            LV AK V  +M  +   P++V Y  L+ G ++ GK+  A E+L  M +KG  PN  +Y+
Sbjct: 129 DLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYS 188

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C++ +++EA++   +M   G    VVTY  L++  C++ K++  +++   M QR
Sbjct: 189 CLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR 248

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
              P  +TY  ++ A    ++L+    L  EM   GC PD   Y+ +     + G++ EA
Sbjct: 249 RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEA 308

Query: 438 VNVWNEMEAASLSP 451
             +  +M+    +P
Sbjct: 309 QELMEKMKLTKRNP 322



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 157/312 (50%), Gaps = 2/312 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD + Y  ++    +  ++ DA   ++EM  +G  P+A  Y  ++  LC+ EK+EEA   
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F +M +     +VVTY TLI+G CK+ +I+  YE+   M  +G +P +++Y  ++    K
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           K++L    ++  +M +  CVP+V  Y  +I    K G+++ A  V + M    ++P   +
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ GF     + EA +  ++MV +G+  AP   T   LLNSL RA K+E A  ++  
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGI--APTVVTYNILLNSLCRADKLEDAFKLFRG 244

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +  + C   V  +   + +L  +  +  A     +M+     P   T+  L  GL +   
Sbjct: 245 MAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGK 304

Query: 576 RQIAAEITEKVR 587
              A E+ EK++
Sbjct: 305 VHEAQELMEKMK 316



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 6/186 (3%)

Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMV 190
           N V +   Y  LI  LSK  K  A   +++ M K+   P + T   +  L+  F   R V
Sbjct: 144 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT---YSCLIDGFCKVRRV 200

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A ++L++M   G  P    +  LL++LC+   +++A KLF  M +R   P++  + +L
Sbjct: 201 DEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTL 260

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           L   C   +L  A  +  +M   G  PD + Y+ L  G  + GK+ +A EL+++M+    
Sbjct: 261 LRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKR 320

Query: 310 DPNANS 315
           +P   S
Sbjct: 321 NPFGRS 326


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 191/385 (49%), Gaps = 9/385 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  L+ +L++ ++F ++ +L+ ++ K   KP  +    F  ++  F+ +  VK+A+++ 
Sbjct: 108 TYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSV---FFNAMINAFSESGNVKEAMKIF 164

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSLLYGWCK 255
            +M   GC+P    F  L+         +E  KL D M   E  KP+ R F SL+  WC 
Sbjct: 165 RKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCN 224

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           + ++ EA  V+ +M  +G +PD+V YN L   YAQ G+ + A  ++ EM+     PN  +
Sbjct: 225 KKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERT 284

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
             ++I   C+  KM++A R    M   G   ++V + +LI GF      D   E L  M 
Sbjct: 285 CGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLME 344

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
           + G+ P+ +T+  IM A      +++C E+  +M K G  PD+  ++++ +   + GE +
Sbjct: 345 EFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPE 404

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           +A ++   M  + + P    F  ++ G+   G +  A   +++M   G+   P   T + 
Sbjct: 405 KAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGI--CPNLKTFET 462

Query: 496 LLNSLLRAQKVEMAKDVWSCIVTKG 520
           L+     A++ + A+++   +  KG
Sbjct: 463 LIWGYGEAKEPQKAEELLQIMEQKG 487



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 159/322 (49%), Gaps = 6/322 (1%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFAS 186
           S++ N   +   + +LI++    ++    W ++ +M     +P ++T   +  L R +A 
Sbjct: 203 SQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVT---YNTLARAYAQ 259

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
                +A  ++ EM      P+E   G +++  CK   +K+A +    MR     P+L  
Sbjct: 260 NGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVI 319

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F SL+ G+            L  M++ G +PD+V ++ +++ ++ +G M    E+  +M 
Sbjct: 320 FNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMV 379

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           + G +P+ +++++L +   R  + E+A      M +SG + +VV +TT+ISG+C + K++
Sbjct: 380 KAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKME 439

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               + + M + GI PN  T+  ++  + + +E ++  EL+  M + G  P  S   +V 
Sbjct: 440 YASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVA 499

Query: 426 RLACKLGELKEAVNVWNEMEAA 447
                LG   EA  + N++E A
Sbjct: 500 DAWHALGLANEAKRIKNDVEEA 521



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 179/407 (43%), Gaps = 39/407 (9%)

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           L++ L +    +EA  +F+ + E   +P+L  +T+LL    ++ +      ++ +++  G
Sbjct: 77  LMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNG 136

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC------------------------ 309
            +PD V +N +++ +++ G + +A ++ ++M+ +GC                        
Sbjct: 137 LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECL 196

Query: 310 ------------DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
                        PN  ++  LI+A C  +++ EA     +M  SG + DVVTY TL   
Sbjct: 197 KLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARA 256

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           + ++ +  R   ++  M    ++PN+ T   I+  + K+ ++++ +  +  MR  G  P+
Sbjct: 257 YAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPN 316

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  +N +I+    + +          ME   + P   +F  +++ +   G + +  E F 
Sbjct: 317 LVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFD 376

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           +MV  G+   P       L    +RA + E A+ + + +   G + NV  +T  I    S
Sbjct: 377 DMVKAGI--EPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCS 434

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
            G ++ A      M +  + P   TF  L+ G  +    Q A E+ +
Sbjct: 435 AGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQ 481



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 150/329 (45%), Gaps = 3/329 (0%)

Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
           ++R  T L+    ++GK  EA+ +   + + G  P ++ Y  LL+   +  +      L+
Sbjct: 70  TVRSRTKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLI 129

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
            ++ + G  P++  +  +I A      ++EA + F +M+  GC+    T+ TLI G+  +
Sbjct: 130 SKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNA 189

Query: 362 RKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
              + C ++LD M Q   + PN  T+  ++ A   K+ + E   ++ +M   G  PDV  
Sbjct: 190 GMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVT 249

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           YN + R   + GE   A  +  EM+   + P   +  ++++G+  +G + +A  +   M 
Sbjct: 250 YNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMR 309

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             G+   P      +L+   L     +   +  + +   G + +V  ++  +++  S G 
Sbjct: 310 NYGV--HPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGL 367

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           + +      DM+ A + P    F+ L +G
Sbjct: 368 MDKCQEIFDDMVKAGIEPDIHAFSILAKG 396


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 175/362 (48%), Gaps = 3/362 (0%)

Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
           VF  L        M ++A++   +M +    P       LL    +        + F +M
Sbjct: 65  VFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDM 124

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
                KP++  +  ++   CKEG +  A  +  +MK  G  PD V YN+++ GY ++G++
Sbjct: 125 IGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRL 184

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            D     +EM+   C+P+  +Y  LI   C+  K+ +    F EM++SG + +VV+Y+TL
Sbjct: 185 DDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTL 244

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           +  FCK   + +  +    M + G++PN+ TY  ++ A+ K   L +   L  EM ++G 
Sbjct: 245 VDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGV 304

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
             +V  Y  +I   C +  +KEA  ++ +M  A + P   S+  ++HGF+    +  A E
Sbjct: 305 EWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALE 364

Query: 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534
              EM GRG+   P        + SL   +K+E AK V + +  KG + N + +T  + +
Sbjct: 365 LLDEMKGRGI--KPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDA 422

Query: 535 LF 536
            F
Sbjct: 423 YF 424



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 185/436 (42%), Gaps = 72/436 (16%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           L+ +FA             +M   G +P  F +  ++D +CK   ++ A+ LF+EM+ R 
Sbjct: 104 LLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRG 163

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P    + S++ G+ K G+L +  Y   +MK    EPD++ YN L++ + + GK+    
Sbjct: 164 LIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGL 223

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER----------------- 341
           E  +EM++ G  PN  SY+ L+ A C+ + M++A + +V+M R                 
Sbjct: 224 EFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAY 283

Query: 342 ------------------SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
                              G E +VVTYT LI G C   +I    E+   M+  G++PN 
Sbjct: 284 CKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNL 343

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            +Y  ++    K + ++  +EL+ EM+  G  PD+  Y   I   C L +++ A  V NE
Sbjct: 344 ASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNE 403

Query: 444 MEAASLSPGT-----------------------------------DSFVVMVHGFLGQGC 468
           M+   +   T                                    +F V++ G      
Sbjct: 404 MQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKL 463

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           + +A +YF  +     L A       A+++ L +  +VE A  ++  +  KG   +  A+
Sbjct: 464 VSKAIDYFGRISNDFGLQA-NAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAY 522

Query: 529 TIWIHSLFSNGHVKEA 544
           T  I      G+V +A
Sbjct: 523 TSLIDGKLKQGNVVQA 538



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 170/393 (43%), Gaps = 42/393 (10%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y ++I    K+ +        EEM+    +P +IT    +    +F     + K +E  
Sbjct: 170 TYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGK---LPKGLEFF 226

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKE 256
            EM + G +P+   +  L+DA CK   +++A K + +MR     P+   +TSL+  +CK 
Sbjct: 227 REMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKI 286

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G L +A  +  +M   G E ++V Y  L+ G   + ++ +A EL  +M   G  PN  SY
Sbjct: 287 GNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASY 346

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI    + + M+ A     EM+  G + D++ Y T I   C   KI+    +++ M +
Sbjct: 347 TALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQE 406

Query: 377 RGILPNQLTYLHIMLAHEKKEE-----------------------------------LEE 401
           +GI  N   Y  +M A+ K E                                    + +
Sbjct: 407 KGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSK 466

Query: 402 CVELMGEM-RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
            ++  G +    G   + + Y  +I   CK  +++ A  ++ +M    L P   ++  ++
Sbjct: 467 AIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLI 526

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
            G L QG +++A     +M   G+ S  ++G L
Sbjct: 527 DGKLKQGNVVQALALRDKMAEIGVESGARFGDL 559



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 2/312 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P   V++ L S   +     +A +   +M+R    P   S   L+    R+ K +   R 
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F +M  +G +  V TY  +I   CK   I+    + + M  RG++P+ +TY  ++  + K
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              L++ V    EM+ + C PDV  YN +I   CK G+L + +  + EM+ + L P   S
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +V  F  +  + +A +++ +M   GL+  P   T  +L+++  +   +  A  +   
Sbjct: 241 YSTLVDAFCKEDMMQQALKFYVDMRRLGLV--PNEHTYTSLVDAYCKIGNLSDAFRLADE 298

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +   G E NV  +T  I  L     +KEA      M+ A V+P   ++  L+ G  K  N
Sbjct: 299 MSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKN 358

Query: 576 RQIAAEITEKVR 587
              A E+ ++++
Sbjct: 359 MDRALELLDEMK 370



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/307 (18%), Positives = 120/307 (39%), Gaps = 20/307 (6%)

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM------------------ERSGCE 345
           M R G      SY ++   L       +ANR   EM                   R+ C 
Sbjct: 1   MNRNGFKHTIESYCIVAHILFCARMYYDANRILREMVLSKAELKDCDVFDVLWSTRNVCV 60

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
                +  L S   +    +   +    M +  + P   +   ++    +  + +     
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
             +M   G  P V  YN++I   CK G+++ A  ++ EM+   L P T ++  M+ G+  
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G L +   +F+EM  + +   P   T   L+N   +  K+    + +  +   G + NV
Sbjct: 181 VGRLDDTVYFFEEM--KSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNV 238

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
            +++  + +      +++A  + +DM    ++P   T+  L+    K+ N   A  + ++
Sbjct: 239 VSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADE 298

Query: 586 VRKMAAE 592
           + ++  E
Sbjct: 299 MSQVGVE 305


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 200/418 (47%), Gaps = 31/418 (7%)

Query: 130 KQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           K P++    D+  Y A++K L   +++  V  LM EM +                     
Sbjct: 203 KLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVH------------------- 243

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHF 246
                  E L +MP++GC PD  ++  ++D +CK+   + A  +   M     KP++  +
Sbjct: 244 -------EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCY 296

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            ++L G C   +  EA+ +L +M       D V +N L+  + Q G +    ELL++M  
Sbjct: 297 NTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLE 356

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            GC P+  +YT +I   C+   ++EA      M   GC+ + ++YT ++ G C++ +   
Sbjct: 357 HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVD 416

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             E++  MIQ+G LPN +T+  ++    KK   E+ +EL+ +M   GC PD+ +Y+ VI 
Sbjct: 417 AQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVID 476

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              K G+ +EA+ + N M    ++P T  +  M      +G   +  + F  +    + S
Sbjct: 477 GLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRS 536

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                   A+++SL +  + + A D ++ +V+ GC  N   +TI I  L S G V+EA
Sbjct: 537 --DAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREA 592



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 168/336 (50%), Gaps = 15/336 (4%)

Query: 148 LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
           LS+M  +G            KP ++    +  +++   SA   ++A ++L EM +  C  
Sbjct: 281 LSRMPSYGL-----------KPNVVC---YNTVLKGLCSAERWEEAEDLLAEMFQEDCPL 326

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D+  F  L+D  C+N  V    +L ++M E    P +  +T+++ G+CKEG + EA  +L
Sbjct: 327 DDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLL 386

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
             M   G +P+ + Y  +L G  +  +  DA EL+  M ++GC PN  ++  LI  +C+ 
Sbjct: 387 KNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKK 446

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
              E+A     +M  +GC  D+++Y+T+I G  K+ K +   E+L+ MI +GI PN + Y
Sbjct: 447 GLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 506

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             +  A  ++   ++ +++   ++      D + YN VI   CK  E   A++ +  M +
Sbjct: 507 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 566

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
               P   ++ +++ G   +G + EA +   E+  R
Sbjct: 567 NGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 602



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 181/404 (44%), Gaps = 13/404 (3%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER- 238
           ++R   +  ++  A+ VLDEMP  GC     +   +L+A C+    + A +    +  + 
Sbjct: 114 IVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKG 173

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
                 +   ++   C++G + E   +L ++   G EPDIV YN +L G     +  D  
Sbjct: 174 CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVE 233

Query: 299 ELLKEMRR----------KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
           EL+ EM R           GC P+   Y  +I  +C+    E AN     M   G + +V
Sbjct: 234 ELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNV 293

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           V Y T++ G C + + +   ++L  M Q     + +T+  ++    +   ++  +EL+ +
Sbjct: 294 VCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 353

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           M + GC+PDV  Y  VI   CK G + EAV +   M A    P T S+ +++ G      
Sbjct: 354 MLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAER 413

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
            ++A E    M+ +G L  P   T   L+N + +    E A ++   ++  GC  ++ ++
Sbjct: 414 WVDAQELISHMIQQGCLPNPV--TFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISY 471

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  I  L   G  +EA      M++  + P    ++ +   L +
Sbjct: 472 STVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSR 515



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 156/319 (48%), Gaps = 4/319 (1%)

Query: 129 SKQPNYVHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           S+ P+Y    +V  Y  ++K L    ++     L+ EM +E   L     F IL+  F  
Sbjct: 282 SRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDV-TFNILVDFFCQ 340

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRH 245
             +V + IE+L++M ++GC PD   +  +++  CK   V EA  L   M     KP+   
Sbjct: 341 NGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTIS 400

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T +L G C+  + V+A+ ++  M   G  P+ V +N L++   + G    A ELLK+M 
Sbjct: 401 YTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQML 460

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
             GC P+  SY+ +I  L +  K EEA      M   G   + + Y+++ S   +  + D
Sbjct: 461 VNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTD 520

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +  ++ DS+    +  +   Y  ++ +  K+ E +  ++    M   GC+P+ S Y ++I
Sbjct: 521 KIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILI 580

Query: 426 RLACKLGELKEAVNVWNEM 444
           R     G ++EA ++ +E+
Sbjct: 581 RGLASEGLVREAQDLLSEL 599



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 151/360 (41%), Gaps = 15/360 (4%)

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            P+   +  ++   C  G + +A  VL +M   G      + + +L    + G    A  
Sbjct: 105 PPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVR 164

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
            L+ +  KGC  ++ +  +++ A+C    ++E      ++   GCE D+V+Y  ++ G C
Sbjct: 165 ALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224

Query: 360 KSRKID----------RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            +++ D          R +E L  M + G  P+   Y  I+    K    E   +++  M
Sbjct: 225 MAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRM 284

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  P+V  YN V++  C     +EA ++  EM          +F ++V  F   G +
Sbjct: 285 PSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLV 344

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
               E  ++M+  G +  P   T   ++N   +   V+ A  +   +   GC+ N  ++T
Sbjct: 345 DRVIELLEQMLEHGCI--PDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYT 402

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           I +  L       +A      M+    +P P TF  L+  + K   + +A +  E +++M
Sbjct: 403 IVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCK---KGLAEQAIELLKQM 459


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 199/432 (46%), Gaps = 5/432 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLD 198
            Y  L+ S  K  +      L++EM  +       +V F +++   A    ++ A++++D
Sbjct: 239 TYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVD 298

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M +   +   F +  L+ AL +   V++A  L  EM  E   P++  + ++++G  K  
Sbjct: 299 SM-RLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCE 357

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +   A+    +M+  G  PD++ YN+LL+ Y + G + +A  LL ++RR G  P   +Y 
Sbjct: 358 QAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYN 417

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   CR+  + EA R   EM   GC  DV TYT L++G  K R +    E  D M+ +
Sbjct: 418 TLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSK 477

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P+   Y   + A           +L   M   G  PD   YNV+I   CK G LK+A
Sbjct: 478 GLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDA 537

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  +M +  L P   ++  ++H    +G L EA +    MV  GL   P   T   L+
Sbjct: 538 KRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGL--QPSVVTYTILV 595

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           ++  R   +  A   +  ++  G E N   + + IH+L   G    A  +  +M++  + 
Sbjct: 596 HTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLA 655

Query: 558 PQPDTFAKLMRG 569
           P   T+  L+ G
Sbjct: 656 PNKYTYTLLIDG 667



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 166/361 (45%), Gaps = 8/361 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y A+I  L K  +  A      EMR     P +IT   +  L+ R+  A  +K+A+ +L
Sbjct: 345 TYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVIT---YNSLLNRYCKAGNLKEALWLL 401

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
            ++ + G  P    +  L+D  C+   + EA +L +EM E+   P +  +T L+ G  K 
Sbjct: 402 GDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKV 461

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
             L  A+    +M   G +PD   YN  +     +     AF+L + M  KG  P+  +Y
Sbjct: 462 RNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTY 521

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            V+I  LC+   +++A R   +M   G + D +TYT LI   C+   +    ++L+ M+ 
Sbjct: 522 NVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVS 581

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G+ P+ +TY  ++    ++  L        +M  +G  P+   YNV+I   C  G    
Sbjct: 582 DGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPL 641

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A   ++EM    L+P   ++ +++ G   +G   +A   + EM   G+   P Y T  AL
Sbjct: 642 AFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGI--PPDYCTHNAL 699

Query: 497 L 497
            
Sbjct: 700 F 700



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 144/321 (44%), Gaps = 7/321 (2%)

Query: 110 VINRCGDAGNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           ++NR   AGNL    ++    ++     +   Y  LI    ++        L EEM ++ 
Sbjct: 384 LLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQG 443

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P + T   + ILM      R +  A E  DEM   G +PD F +   + A    SS  
Sbjct: 444 CFPDVCT---YTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTP 500

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A +L + M  +   P    +  ++ G CK G L +AK +  +M   G +PD + Y  L+
Sbjct: 501 MAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLI 560

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
             + + G + +A +LL  M   G  P+  +YT+L+   CR   +  A   F +M   G E
Sbjct: 561 HAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIE 620

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
            + +TY  LI   C + +    +     M++RG+ PN+ TY  ++  + ++    + + L
Sbjct: 621 PNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRL 680

Query: 406 MGEMRKIGCVPDVSNYNVVIR 426
             EM + G  PD   +N + +
Sbjct: 681 YFEMHQNGIPPDYCTHNALFK 701



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 170/362 (46%), Gaps = 7/362 (1%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN--SYTV 318
           + + V  +M     EP IV YN LL  + + G+  +A  LLKEM  +G   + N  ++ V
Sbjct: 220 DVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNV 279

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I  L R   +E A +  V+  R   +A   TY  LI+   +   + +   +   M   G
Sbjct: 280 VISFLAREGHLENAVK-LVDSMRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEG 338

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I+P  +TY  I+    K E+ E       EMR +G +PDV  YN ++   CK G LKEA+
Sbjct: 339 IMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEAL 398

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            +  ++  A L+P   ++  ++ G+   G L EA    +EMV +G    P   T   L+N
Sbjct: 399 WLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCF--PDVCTYTILMN 456

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
              + + + MA++ +  +++KG + + +A+   I +  +      A      MM   + P
Sbjct: 457 GSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYP 516

Query: 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ-ITFK-MYKRRGERDLKEKAKKQV 616
              T+  ++ GL K  N + A  +  K+     +   IT+  +     ER L  +A+K +
Sbjct: 517 DTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLL 576

Query: 617 DG 618
           +G
Sbjct: 577 NG 578



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           +K A  +  +M   G +PD   + CL+ A C+   ++EA KL + M  +  +PS+  +T 
Sbjct: 534 LKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTI 593

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L++  C+ G L  A     +M D G EP+ + YN L+      G+   AF    EM  +G
Sbjct: 594 LVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERG 653

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
             PN  +YT+LI   CR     +A R + EM ++G   D  T+  L  GF
Sbjct: 654 LAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 703



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 5/281 (1%)

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+      +++ L    + ++    + EM +   E  +VTY TL+  F K  + D  
Sbjct: 197 GVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEA 256

Query: 368 YEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
             +L  M  +  G   N +T+  ++    ++  LE  V+L+  MR +        YN +I
Sbjct: 257 SMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMR-LSKKASSFTYNPLI 315

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               + G +++A  +  EME   + P   ++  ++HG L       A   F EM   GLL
Sbjct: 316 TALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLL 375

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
             P   T  +LLN   +A  ++ A  +   +   G    V  +   I      G + EA 
Sbjct: 376 --PDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEAR 433

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               +M++    P   T+  LM G +K+ N  +A E  +++
Sbjct: 434 RLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEM 474


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 212/457 (46%), Gaps = 41/457 (8%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P L+T    V   +       V  A+E+ D+M + G + D  ++G L++AL K    + 
Sbjct: 6   QPNLVTVSTLV---KGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARR 62

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A +L   M  E    +   +  ++   CK+G  ++   +  +M + G  P+++VY++L++
Sbjct: 63  AVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLIN 122

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           G  ++GK+ +A  L  EM  +G   N  +Y  LI A CR    +EA R F +M   G   
Sbjct: 123 GLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILP 182

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY--------LHIMLAHEKK-- 396
           DVVT+TTLI    K  K+   Y+I + MI++G  PN +TY        LH  + H  +  
Sbjct: 183 DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 397 -------------------------EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
                                     + EE + L  +M+     P ++ Y ++++   + 
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQN 302

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
           G ++ A  ++N M+    SP  D++ V++ G    GC+ EA + F+ +  + +   P   
Sbjct: 303 GRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSL--KSIKYKPSIR 360

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
               L+  + +A++ E A +++  I T G   N+  + I I+ L   G + EA    + M
Sbjct: 361 IYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQM 420

Query: 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
            ++       +F  ++RG  +    Q A E  +++R+
Sbjct: 421 EESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMRE 457



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 173/351 (49%), Gaps = 10/351 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN +    VY +LI  L ++ K      L +EM  +  K  +IT    +    RF    +
Sbjct: 112 PNVI----VYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFG---L 164

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            K+A     +M   G  PD   F  L+D L K   V+EA K+F+ M ++   P++  + S
Sbjct: 165 WKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNS 224

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL G C   ++  A  +   M + G + D++ YN L++GY   GK  +A  L ++M+ + 
Sbjct: 225 LLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEE 284

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +YT+L++AL +  ++  A   F  M+  G    + TYT L+ G CK+  I+   
Sbjct: 285 LTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAI 344

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++  S+      P+   Y  ++    +    E  +E+  E+  +G VP++  YN++I   
Sbjct: 345 DVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGL 404

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
           CK G+L EA  ++ +ME +       SF  ++ GFL +  + +A E+ K M
Sbjct: 405 CKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRM 455



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 167/339 (49%), Gaps = 4/339 (1%)

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
           M+  ++P+L   ++L+ G C EGK+++A  +  +M  +GF+ DI++Y  L++   +  + 
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
             A EL + M  + C  N  +Y ++I +LC+     +  + F EM   G   +V+ Y++L
Sbjct: 61  RRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSL 120

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           I+G C+  K+     + D M+ +GI  N +TY  ++ A  +    +E      +M   G 
Sbjct: 121 INGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGI 180

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           +PDV  +  +I    K G+++EA  ++  M     +P   ++  +++G      +  A  
Sbjct: 181 LPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVR 240

Query: 475 YFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
            F+ MV RG+ +    Y T   L+N    + K E A  ++  +  +    ++  +TI + 
Sbjct: 241 LFEVMVERGIKIDVISYNT---LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLK 297

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +L+ NG ++ A     +M      P  DT+  L+ GL K
Sbjct: 298 ALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCK 336



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 149/294 (50%), Gaps = 7/294 (2%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   F  L+   +    V++A ++ + M K G  P+   +  LL+ LC +  +  A
Sbjct: 182 PDVVT---FTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHA 238

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            +LF+ M ER  K  +  + +L+ G+C  GK  EA  +  +M+     P I  Y  LL  
Sbjct: 239 VRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKA 298

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
             Q G++  A EL   M+  G  P+ ++YTVL+  LC+   +EEA   F  ++    +  
Sbjct: 299 LYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPS 358

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE-ELEECVELM 406
           +  Y+ LI G  ++R+ +   EI D +   G++PN +TY +IM+    KE +L E   L 
Sbjct: 359 IRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTY-NIMINGLCKEGKLLEAERLF 417

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
            +M + GC  D  ++N +IR   +  ++++A+     M   + SP  DS  +M+
Sbjct: 418 VQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSP-NDSVTLML 470



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 12/286 (4%)

Query: 121 GYRYYMWASKQ---PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF 177
            Y+ +    KQ   PN V     Y +L+  L    +      L E M  E+   I    +
Sbjct: 203 AYKIFELMIKQGEAPNIV----TYNSLLNGLCLHHQMDHAVRLFEVM-VERGIKIDVISY 257

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE 237
             L+  + ++   ++A+ +  +M      P    +  LL AL +N  ++ A +LF+ M+ 
Sbjct: 258 NTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQI 317

Query: 238 RFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
             + PSL  +T LL G CK G + EA  V   +K   ++P I +Y+ L+ G  Q  +   
Sbjct: 318 CGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWES 377

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A E+  E+   G  PN  +Y ++I  LC+  K+ EA R FV+ME SGCE D +++  +I 
Sbjct: 378 AMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIR 437

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQ---LTYLHIMLAHEKKEEL 399
           GF +  ++ +  E L  M ++   PN    L  +++  A  +  EL
Sbjct: 438 GFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSEL 483



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 133/282 (47%), Gaps = 6/282 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI  LSK  K    + + E M K  E P ++T   +  L+        +  A+ + +
Sbjct: 187 FTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVT---YNSLLNGLCLHHQMDHAVRLFE 243

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
            M + G + D   +  L++  C +   +EA  LF +M+ E   PS+  +T LL    + G
Sbjct: 244 VMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNG 303

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++  AK +   M+  G  P +  Y  LL G  + G + +A ++ + ++     P+   Y+
Sbjct: 304 RIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYS 363

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI  + +  + E A   F E+   G   ++VTY  +I+G CK  K+     +   M + 
Sbjct: 364 ILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEES 423

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           G   +++++  I+    ++ ++++ +E +  MR+    P+ S
Sbjct: 424 GCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDS 465



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 37/256 (14%)

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
           +SG + ++VT +TL+ G C   K+    E+ D M + G   + L Y +++ A  K  +  
Sbjct: 2   KSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQAR 61

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
             VEL   M    C  +   Y +VI   CK                              
Sbjct: 62  RAVELHRRMLSEICSGNFFTYGLVIDSLCK------------------------------ 91

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
                 G  I+  + F+EM+  G+   P      +L+N L R  K+  A +++  +V++G
Sbjct: 92  -----DGLAIKGLKMFREMINMGI--CPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQG 144

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
            + NV  +   IH+    G  KEA      M+   ++P   TF  L+  L K    Q A 
Sbjct: 145 IKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAY 204

Query: 581 EITEKVRKMAAERQIT 596
           +I E + K      I 
Sbjct: 205 KIFELMIKQGEAPNIV 220


>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 197/426 (46%), Gaps = 46/426 (10%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK---QPNYVHSYDVYR 142
           S + ++E AL    + L   L   V+ R        Y ++ WAS+   +  Y     V+ 
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHN 159

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
            ++  L +MR+F        EM         T++F                    DEM K
Sbjct: 160 EILDILGRMRRF-------HEM---------TQLF--------------------DEMSK 183

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAA-KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
                +E  FG LL+        +EAA K+F    +R    +R    +L GWC  G L E
Sbjct: 184 RKGLVNERTFGVLLNRYAAAHKTEEAAVKIF---YKRKGAWIRSMNVILNGWCVLGSLRE 240

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           AK     +  +  +PD   Y   ++   + GK++ A +L + M  KGC+P+      +I 
Sbjct: 241 AKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIID 300

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           ALC  +++ EA     EM    C+ DV TY +LI   CK ++ ++ YE+LD M Q+G LP
Sbjct: 301 ALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLP 360

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           N  TY +++ + +K EE+   +E    M + GC  +   YN++++L    G   +  +  
Sbjct: 361 NARTYGYLLKSTKKPEEVPGILE---RMERNGCRMNSDCYNLILKLYMDWGYELKLRSTL 417

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
           +EME   + P   ++ +M+HG   +G + +A  YFK+M   G++  P+   L   +N  L
Sbjct: 418 DEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEPRTTLLVNAMNIKL 477

Query: 502 RAQKVE 507
           + ++ E
Sbjct: 478 KEREAE 483



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 43/242 (17%)

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A+R  +E   SG       +  ++    + R+     ++ D M +R  L N+ T+  ++ 
Sbjct: 142 ASRCGIE---SGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLN 198

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            +    + EE    +   RK   +    + NV++   C LG L+EA   WN++  +   P
Sbjct: 199 RYAAAHKTEEAAVKIFYKRKGAWI---RSMNVILNGWCVLGSLREAKRFWNDIITSKCKP 255

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
             D F                                 YG     +NSL +A K+  A  
Sbjct: 256 --DKFT--------------------------------YGIF---INSLTKAGKLSTAVK 278

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           ++  +  KGC  +V      I +L     + EA     +M + D  P   T+  L++ L 
Sbjct: 279 LFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLC 338

Query: 572 KL 573
           K+
Sbjct: 339 KI 340


>gi|413932621|gb|AFW67172.1| PHD finger protein [Zea mays]
          Length = 1166

 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 203/439 (46%), Gaps = 23/439 (5%)

Query: 94  ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLS---- 149
           AL   G  L   L   V++R      L +R++ WAS+Q  Y H    Y  +I  LS    
Sbjct: 459 ALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYNHEPTTYNDIIDILSGTRY 518

Query: 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
           K R+FG +  +++ M++   + +  E  + ++R +    +            +    P+ 
Sbjct: 519 KSRQFGVLCNVLDHMKRHGSRSVPVEDLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPET 578

Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQM 269
                LLDA CK   VKEA  +F  ++ +   +   +++L +GWC+     +A  VL +M
Sbjct: 579 DALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEM 638

Query: 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQALCRM 326
                 P+   Y   +  +   G +++A EL + MR +G     P A +Y+++I AL + 
Sbjct: 639 IQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVALAKA 698

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
           ++MEE      +M   GC  DV TY  LI G C   K+D  Y +LD M + G  P+ +T 
Sbjct: 699 DRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVT- 757

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
                 H K ++  E  E M E     C P V  YN+++ +  ++GE   A+++  EM+ 
Sbjct: 758 ------HRKADDALELCERMIEAH---CEPSVHTYNMMMMMFFEMGEAHRALDICLEMDK 808

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQK 505
                  D++ +M++G    G    A     E++ R + LS  ++  +  +L SL +A +
Sbjct: 809 RRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSYKKFDAI--MLRSLFKAIR 866

Query: 506 VEMAKDVWSCIVTKGCELN 524
               K +  C +  G +++
Sbjct: 867 ---GKYIKKCALNCGLDMD 882


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 220/466 (47%), Gaps = 10/466 (2%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILM 181
           ++ W +++P + H+   + AL++ L++ R       L+  M    +  + +   V  I  
Sbjct: 74  FFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREAVDAIQA 133

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFK 240
            R     + +KA  +L  MP  GC  +E+ +  L+  LC+   V+EA  L   M ++   
Sbjct: 134 IRRVGGDL-RKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCS 192

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
            +L  +T L+ G CKEG++  A+ VL +M   G  P +  YN ++ GY + G+M DA  +
Sbjct: 193 LNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGI 252

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
              M R GC+P+  +Y +LI  LC  EK +EA     +    G    V+T+T +I+G+CK
Sbjct: 253 KALMERNGCNPDDWTYNILIYGLCG-EKPDEAEELLNDAIVRGFTPTVITFTNIINGYCK 311

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           + +ID    +  SM+      +   Y  ++    KK   +E  E + EM   G  P+V  
Sbjct: 312 AERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVI 371

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           Y  +I   CK+G++  A+ V+  ME     P   ++  +++G +    L +A     +M 
Sbjct: 372 YTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQ 431

Query: 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
             G+   P   T   L+    +  + + A  ++  +   G   +  A+ +  H+L  +G 
Sbjct: 432 EDGI--TPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGR 489

Query: 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            +EA S+   ++   V+    T+  L+ G  K  N   AA + EK+
Sbjct: 490 AEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKM 532



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 218/502 (43%), Gaps = 74/502 (14%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LIK L K  +      ++EEM  R   P + T   +  ++  +  +  +K A+ +  
Sbjct: 198 YTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWT---YNAMIDGYCKSGRMKDALGIKA 254

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE-- 256
            M + GC PD++ +  L+  LC     +    L D +   F P++  FT+++ G+CK   
Sbjct: 255 LMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAER 314

Query: 257 -----------------------GKLV----------EAKYVLVQMKDAGFEPDIVVYNN 283
                                  G L+          EAK  + +M   G  P++V+Y +
Sbjct: 315 IDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTS 374

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           ++ GY ++GK+  A E+ + M  +GC PNA +Y+ LI  L + +K+ +A     +M+  G
Sbjct: 375 IIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDG 434

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ-------------------- 383
               V+TYTTLI G CK  + D  + + + M Q G+ P++                    
Sbjct: 435 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAY 494

Query: 384 ------------LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
                       +TY  ++    K    +    L+ +M   GC  D   Y+V+++  CK 
Sbjct: 495 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQ 554

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            +L EA+++ ++M  + +     ++ +++   + +G    A   F EM+  G    P   
Sbjct: 555 KKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSG--HKPSAT 612

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T    ++S  +  ++E A+ +   +   G   +V  + ++I+     G++  A S    M
Sbjct: 613 TYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRM 672

Query: 552 MDADVMPQPDTFAKLMRGLKKL 573
           +DA   P   T+  L++   K+
Sbjct: 673 IDASCEPNYWTYWILLKHFLKM 694



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 207/459 (45%), Gaps = 33/459 (7%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V    +Y ++I    K+ K GA   +   M  E  +P   T   +  L+      + 
Sbjct: 367 PNVV----IYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWT---YSSLIYGLIQDQK 419

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + KA+ ++ +M + G  P    +  L+   CK      A +LF+ M +    P  + +  
Sbjct: 420 LHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 479

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L +  CK G+  EA   LV+    G     V Y +L+ G+++ G    A  L+++M  +G
Sbjct: 480 LTHALCKSGRAEEAYSFLVR---KGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 536

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  ++ +Y+VL+QALC+ +K+ EA     +M  SG + ++V YT +IS   K  K D   
Sbjct: 537 CKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAK 596

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + + MI  G  P+  TY   + ++ K  ++EE   L+GEM + G  PDV  YNV I   
Sbjct: 597 SMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGC 656

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA---------------- 472
             +G +  A +    M  AS  P   ++ +++  FL    L++A                
Sbjct: 657 GHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMS-LVDAHYVDTSGMWNWIELDT 715

Query: 473 -CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
             +  + MV  GL   P   T  +++    +A ++E A  ++  +  K    N   +T+ 
Sbjct: 716 VWQLLERMVKHGL--NPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTML 773

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           I          +A S+  DM++    P  +++  L+ GL
Sbjct: 774 IKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGL 812



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 168/374 (44%), Gaps = 18/374 (4%)

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           K  ++T   +  L+  F+ A     A  ++++M   GC+ D + +  LL ALCK   + E
Sbjct: 500 KGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNE 559

Query: 228 AAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  + D+M     K ++  +T ++    KEGK   AK +  +M  +G +P    Y   +S
Sbjct: 560 ALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFIS 619

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            Y ++G++ +A  L+ EM R G  P+  +Y V I     M  M+ A      M  + CE 
Sbjct: 620 SYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEP 679

Query: 347 DVVTYTTLISGFCKSRKIDRCY----------------EILDSMIQRGILPNQLTYLHIM 390
           +  TY  L+  F K   +D  Y                ++L+ M++ G+ P  +TY  I+
Sbjct: 680 NYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSII 739

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
               K   LEE   L   MR     P+   Y ++I+  C +    +AV+   +M      
Sbjct: 740 AGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQ 799

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P  +S+  ++ G   +G   +A   F +++G    +  +    K L + LL+A  V+   
Sbjct: 800 PHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNHNEVA-WKILNDGLLKAGHVDFCS 858

Query: 511 DVWSCIVTKGCELN 524
            + S +  + C+++
Sbjct: 859 QLLSAMENRHCQID 872



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 24/291 (8%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S   Y   I S  K+ +      L+ EM ++   P ++T  VF+           + +A 
Sbjct: 610 SATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFI---NGCGHMGYMDRAF 666

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
             L  M    CEP+ + +  LL    K S V   A   D             TS ++ W 
Sbjct: 667 STLKRMIDASCEPNYWTYWILLKHFLKMSLVD--AHYVD-------------TSGMWNWI 711

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
           +   + +   +L +M   G  P  V Y+++++G+ +  ++ +A  L   MR K   PN  
Sbjct: 712 ELDTVWQ---LLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEE 768

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL-DS 373
            YT+LI+  C ++   +A     +M   G +  + +Y  LI G C     D+   +  D 
Sbjct: 769 IYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDL 828

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           +       N++ +  +     K   ++ C +L+  M    C  D   Y++V
Sbjct: 829 LGMEDYNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMV 879


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 173/360 (48%), Gaps = 8/360 (2%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           ++F +LMR       +  A  V DEM   G       F  ++  +C+   +  A  L   
Sbjct: 117 KLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRR 176

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M E    P +  + +L+ G C+ G++ +A+ V  +M   G +P+ VV+  L+  + + G 
Sbjct: 177 MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 236

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
                EL +EMR +G  P+A +Y  ++  LCR   ++ A+   VEM  +G   D VTYTT
Sbjct: 237 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 296

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI G+CK  ++D   EI  +M+  G+  +++TY  ++    K     +   ++GEM + G
Sbjct: 297 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 356

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD + Y +VI   C+ G++K  + +  EM+     PG  ++ V+++GF   G +  A 
Sbjct: 357 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 416

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC--ELNVYAWTIW 531
                M+  G+  +P   T   LL+   +  KV    D+      KG   +L VY   + 
Sbjct: 417 MLLNAMINIGV--SPDDITYNILLDGHCKHGKV---TDIEELKSAKGTVPDLGVYTSIVG 471



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 2/313 (0%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA    +Q+ DAG  P+  ++N L+    ++G++  A  +  EM+ +G      S+  +I
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             +CR   ++ A      M  +G   DV TY  LI G C+  +I+    + + M  RG+ 
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 218

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN + +  ++ AH KK + E  +EL  EMR+ G  PD   YN ++   C+  +LK A  +
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 278

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
             EM +A L P T ++  ++ G+  +  L  A E  + MV  G+       T  AL++ L
Sbjct: 279 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGV--GLDEVTYTALISGL 336

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +A +   A+ V   ++  G E +   +T+ I +    G VK       +M +    P  
Sbjct: 337 SKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGV 396

Query: 561 DTFAKLMRGLKKL 573
            T+  +M G  KL
Sbjct: 397 VTYNVIMNGFCKL 409



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI+ L ++ +      + E+M  R  KP  +   VF IL+         +  +E+  
Sbjct: 189 YGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAV---VFTILIDAHCKKGDAETMLELHR 245

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  PD   +  +++ LC+   +K A+ +  EMR    +P    +T+L+ G+CKE 
Sbjct: 246 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 305

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L  A  +   M   G   D V Y  L+SG ++ G+  DA  +L EM   G +P+  +YT
Sbjct: 306 ELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYT 365

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I A CR   ++   R   EM+  G +  VVTY  +++GFCK  ++     +L++MI  
Sbjct: 366 MVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINI 425

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           G+ P+ +TY  ++  H K  ++ +  EL       G VPD+  Y  ++
Sbjct: 426 GVSPDDITYNILLDGHCKHGKVTDIEELKSAK---GTVPDLGVYTSIV 470



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 132/268 (49%), Gaps = 3/268 (1%)

Query: 172 ITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           +T +V+    L++       ++ A  V ++M   G +P+  VF  L+DA CK    +   
Sbjct: 182 VTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETML 241

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +L  EMRER  +P    + +++ G C+   L  A  ++V+M+ AG  PD V Y  L+ GY
Sbjct: 242 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 301

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +  ++  A E+ + M  +G   +  +YT LI  L +  +  +A R   EM  +G E D 
Sbjct: 302 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 361

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TYT +I  FC+   +     +L  M  +G  P  +TY  IM    K  +++    L+  
Sbjct: 362 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNA 421

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKE 436
           M  IG  PD   YN+++   CK G++ +
Sbjct: 422 MINIGVSPDDITYNILLDGHCKHGKVTD 449



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 2/331 (0%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P  + F  L+    + G+L  A+ V  +M+  G    +V +N ++SG  + G +  A 
Sbjct: 112 LPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAE 171

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L + M   G  P+  +Y  LIQ LCR+ ++E+A   F +M   G + + V +T LI   
Sbjct: 172 TLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAH 231

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK    +   E+   M +RG+ P+ +TY  I+    +  +L+    ++ EMR  G  PD 
Sbjct: 232 CKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 291

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y  +I   CK  EL  A+ +   M A  +     ++  ++ G    G   +A     E
Sbjct: 292 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 351

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  GL   P   T   ++++  R   V+    +   +  KG +  V  + + ++     
Sbjct: 352 MMEAGL--EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 409

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           G +K A      M++  V P   T+  L+ G
Sbjct: 410 GQMKNADMLLNAMINIGVSPDDITYNILLDG 440



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EAC ++ +++  GL   P+      L+  L+R  ++  A++V+  + ++G    V ++  
Sbjct: 99  EACAFYLQLLDAGL--PPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNT 156

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            I  +   G +  A +    M +A V P   T+  L++GL ++   + A  + EK+
Sbjct: 157 MISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 200/419 (47%), Gaps = 9/419 (2%)

Query: 158 WALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215
           + +++ M+ +   P ++T   + IL+    S  M+  A+E  +++ K    P    +  L
Sbjct: 109 YQVLDRMKNKGFSPDIVT---YNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTIL 165

Query: 216 LDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++A      + EA KL DEM E   +P +  + S++   C+EG +  A  V+  +   G+
Sbjct: 166 IEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEVISSISSKGY 224

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
             D++ YN LL      GK    FEL+ +M  KGC+ N  +Y+VLI +LCR  K+EE   
Sbjct: 225 ALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVG 284

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
              +M++ G E D   Y  LI+  CK  ++D   E+LD MI  G +P+ + Y  I+    
Sbjct: 285 LLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLC 344

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K++  +E + +  ++ ++GC P+ S+YN V       G    A+ +  EM    + P   
Sbjct: 345 KQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEM-LDXVDPDVI 403

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++  ++      G + EA E   +M        P   +   +L  L R  +V  A +V +
Sbjct: 404 AYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLA 463

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
            +V KGC  N   +T  I  +   G + +A      +++ D + +  +F +L +   KL
Sbjct: 464 AMVDKGCLPNETTYTFLIEGIGFGGWLNDARDLATTLVNMDAISE-HSFERLYKTFCKL 521



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 6/303 (1%)

Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
           A  VL +MK+ GF PDIV YN L+      G +  A E   ++ ++  +P   +YT+LI+
Sbjct: 108 AYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIE 167

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
           A      ++EA +   EM     + DV  Y ++I   C+   +DR +E++ S+  +G   
Sbjct: 168 ATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEVISSISSKGYAL 226

Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
           + +TY  ++ +   + + E   ELM +M   GC  +V  Y+V+I   C+ G+++E V + 
Sbjct: 227 DVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLL 286

Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            +M+   L P    +  ++     +G +  A E    M+  G +  P       +L  L 
Sbjct: 287 KDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCV--PDIVNYNTILACLC 344

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           + ++ + A  ++  +   GC  N  ++     +L S+GH   A    L+M+D      PD
Sbjct: 345 KQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLDX---VDPD 401

Query: 562 TFA 564
             A
Sbjct: 402 VIA 404



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 5/265 (1%)

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
           E +  A +    M+  G   D+VTY  LI   C    +    E  + +++    P  +TY
Sbjct: 103 ESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTY 162

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++ A   +  ++E ++L+ EM +I   PDV  YN +I + C+ G +  A  V + + +
Sbjct: 163 TILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXM-CREGYVDRAFEVISSISS 221

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
              +    ++ +++     QG      E   +MV +G        T   L++SL R  KV
Sbjct: 222 KGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKG--CEANVVTYSVLISSLCRDGKV 279

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAK 565
           E    +   +  KG E + Y +   I  L   G V  A    LD+M +D  +P    +  
Sbjct: 280 EEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEV-LDVMISDGCVPDIVNYNT 338

Query: 566 LMRGLKKLYNRQIAAEITEKVRKMA 590
           ++  L K      A  I EK+ ++ 
Sbjct: 339 ILACLCKQKRADEALSIFEKLGEVG 363



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           +  I   Y++LD M  +G  P+ +TY  ++ +   +  L   +E   ++ K    P V  
Sbjct: 102 TESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVT 161

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGT---DSFVVMVHGFLGQGCLIEACEYFK 477
           Y ++I      G + EA+ + +EM   +L P     +S + M      +G +  A E   
Sbjct: 162 YTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXMCR----EGYVDRAFEVIS 217

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            +  +G   A    T   LL SL    K E   ++ S +V KGCE NV  +++ I SL  
Sbjct: 218 SISSKGY--ALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCR 275

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           +G V+E      DM    + P    +  L+  L K     +A E+ +
Sbjct: 276 DGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLD 322


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 168/326 (51%), Gaps = 7/326 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+ SL K  K+     + EEM  +   P+L+T   +  ++  +  A  + +A+ ++ 
Sbjct: 160 YTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVT---YATVVNGYCKAGRIDQALSLMR 216

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            +   G  P   ++  L+D LCK+    EA +LF EM       +  +TS + G CK GK
Sbjct: 217 RLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQDVIVYTSFISGLCKAGK 275

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L EAK V V+M +AG  PD V YN ++    +  ++++A EL+ +   + C P     TV
Sbjct: 276 LDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTV 335

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEA-DVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           L+  LC+  ++EEA      M  +G  A  VVTY+ +I G CK+ ++D  Y +L  M + 
Sbjct: 336 LVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRA 395

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G +P+ +TY  I+ A  K   L+E  EL   M + GC  DV  YN++IR  C+  ++ EA
Sbjct: 396 GCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEA 455

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGF 463
           + +  EM    + P   S   +V G 
Sbjct: 456 IAMIEEMAGRGIQPNVVSLSTIVDGL 481



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 223/491 (45%), Gaps = 52/491 (10%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-----TEVFV 178
           ++ WA  +P + H+     +L++       F       E  R  K +L+T        + 
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLLEV------FVNDGCHREAYRVFKDELVTLFRPDDFTYG 56

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
            L+R F  A  + +A+ +L EM   G  P    FG L+  LC+ +   +A ++F +M + 
Sbjct: 57  TLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDM 116

Query: 238 RFKPSLRHFTSLLYGWCKEGKL-VEAKY-----------------VLV------------ 267
           + KP    +T ++   CK  KL + A Y                 VLV            
Sbjct: 117 KVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQG 176

Query: 268 -----QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
                +M   G  P++V Y  +++GY + G++  A  L++ ++  G  P+ + Y+ LI  
Sbjct: 177 HQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDG 236

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC+ ++ +EA   F EM  +G   DV+ YT+ ISG CK+ K+D    +   MI+ G  P+
Sbjct: 237 LCKHDRHDEARELF-EMA-AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPD 294

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            ++Y  I+ +  K   + E  ELM +  +  C+P V    V++   CK   ++EA  +  
Sbjct: 295 PVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILE 354

Query: 443 EM-EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
            M E    +P   ++  ++ G      L +A    ++M   G +  P   T  A++++  
Sbjct: 355 RMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCV--PDVVTYTAIIDAFC 412

Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
           +  +++ A++++  +  +GC L+V A+ I I        V EA +   +M    + P   
Sbjct: 413 KVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVV 472

Query: 562 TFAKLMRGLKK 572
           + + ++ GL K
Sbjct: 473 SLSTIVDGLCK 483



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 186/375 (49%), Gaps = 11/375 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y  +I  L K+ K     +  E M +    P  +T   + +L+     A   ++  ++ 
Sbjct: 124 LYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVT---YTVLVHSLFKACKWEQGHQIF 180

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKE 256
           +EM   G  P+   +  +++  CK   + +A  L   ++   + PS   +++L+ G CK 
Sbjct: 181 EEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKH 240

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            +  EA+  L +M  AG   D++VY + +SG  + GK+ +A  +  +M   GC P+  SY
Sbjct: 241 DRHDEARE-LFEMA-AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSY 298

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            V+I +LC+  ++ EA     +     C   V   T L+ G CKSR+++    IL+ M++
Sbjct: 299 NVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLE 358

Query: 377 RGI-LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
            G   P+ +TY  ++    K + L++   ++ +MR+ GCVPDV  Y  +I   CK+G L 
Sbjct: 359 TGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLD 418

Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495
           EA  ++  M     +    ++ +++ G+     + EA    +EM GRG+   P   +L  
Sbjct: 419 EARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI--QPNVVSLST 476

Query: 496 LLNSLLRAQKVEMAK 510
           +++ L +  +VE A+
Sbjct: 477 IVDGLCKESRVEEAR 491



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 143/275 (52%), Gaps = 5/275 (1%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S  +Y  LI  L K  +      L E    +   +I   V+   +     A  + +A  V
Sbjct: 226 SGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVI---VYTSFISGLCKAGKLDEAKAV 282

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
             +M + GC PD   +  ++ +LCK++ V EA +L D+  ER   P +   T L+ G CK
Sbjct: 283 HVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 342

Query: 256 EGKLVEAKYVLVQMKDAGFE-PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             ++ EA  +L +M + G   P +V Y+ ++ G  +  ++ DA+ +L++MRR GC P+  
Sbjct: 343 SRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVV 402

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +YT +I A C++ +++EA   F  M   GC  DVV Y  LI G+C++ K+D    +++ M
Sbjct: 403 TYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEM 462

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
             RGI PN ++   I+    K+  +EE   LM +M
Sbjct: 463 AGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 187/387 (48%), Gaps = 6/387 (1%)

Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
           G + + +    LL+    +   +EA ++F DE+   F+P    + +L+ G+CK  ++ +A
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQA 71

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             +L +MK AG  P IV + +L+    ++     A ++  +M      P+A  YTV+I  
Sbjct: 72  VNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGH 131

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
           LC++ K++ A   F  M +SGC  D VTYT L+    K+ K ++ ++I + M+ +G  P 
Sbjct: 132 LCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPE 191

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
            +TY  ++  + K   +++ + LM  ++  G  P  S Y+ +I   CK     EA  ++ 
Sbjct: 192 LVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF- 250

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
           EM A  +      +   + G    G L EA     +M+  G   AP   +   ++ SL +
Sbjct: 251 EMAAGDVQ-DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG--CAPDPVSYNVIIYSLCK 307

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD-ADVMPQPD 561
             +V  AK++    + + C   V   T+ +  L  +  V+EAC     M++  D  P   
Sbjct: 308 DNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVV 367

Query: 562 TFAKLMRGLKKLYNRQIAAEITEKVRK 588
           T++ ++ GL K      A  + +K+R+
Sbjct: 368 TYSAVIDGLCKADRLDDAYVVLQKMRR 394



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 157/351 (44%), Gaps = 8/351 (2%)

Query: 240 KPSLRHFT----SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           +P  +H T    SLL  +  +G   EA  V        F PD   Y  L+ G+ +  ++ 
Sbjct: 10  RPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIP 69

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A  LL EM+  G  P   ++  LI+ LC +   ++A + F +M     + D   YT +I
Sbjct: 70  QAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVI 129

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
              CK  K+D      + M+Q G LP+++TY  ++ +  K  + E+  ++  EM   G  
Sbjct: 130 GHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHS 189

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           P++  Y  V+   CK G + +A+++   ++    SP    +  ++ G        EA E 
Sbjct: 190 PELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEAREL 249

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F EM    +     Y    + ++ L +A K++ AK V   ++  GC  +  ++ + I+SL
Sbjct: 250 F-EMAAGDVQDVIVY---TSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSL 305

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +  V EA       M+   MP       L+ GL K    + A  I E++
Sbjct: 306 CKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERM 356


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 192/395 (48%), Gaps = 7/395 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V +A+ + D M K     D + +G L++ LCK      A     +M ER +KP++  +++
Sbjct: 163 VAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYST 222

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK+G + EA  +  +M   G  P++V Y  L+ G    G+  +A  LL EM + G
Sbjct: 223 IMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMG 282

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+     +L+ A C+  K+ +A      M  +G   DV TY +LI  +C   K++   
Sbjct: 283 MRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAM 342

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            +   M+ RG LP+ + +  ++    K + + + + L+ EM K+G VPDV+ +  +I   
Sbjct: 343 RVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGF 402

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSA 487
           C+ G    A  ++  M      P   +  V++ G   +  L EA    K M    L L+ 
Sbjct: 403 CQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNI 462

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
             Y     LL+ +  A K+  A +++S +  KG ++NVY +TI I  L   G + +A   
Sbjct: 463 VIY---SILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDL 519

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            ++M +   +P   T+   ++GL  L  ++IA  I
Sbjct: 520 LINMEENGCLPNNCTYNVFVQGL--LTKKEIARSI 552



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 173/361 (47%), Gaps = 20/361 (5%)

Query: 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           + GL    +N C +    G R        PN V     Y  LI+ L    ++    +L++
Sbjct: 229 KDGLVSEALNLCSEMNGKGVR--------PNLV----TYACLIQGLCNFGRWKEAGSLLD 276

Query: 163 EMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220
           EM K   +P L   ++  IL+  F     V +A  V+  M   G  PD F +  L+   C
Sbjct: 277 EMMKMGMRPDL---QMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYC 333

Query: 221 KNSSVKEAAKLFDEMRERFK-PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
             + + EA ++F  M  R + P +  FTSL++GWCK+  + +A ++L +M   GF PD+ 
Sbjct: 334 LQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVA 393

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            +  L+ G+ Q G+   A EL   M + G  PN  +  V++  LC+   + EA      M
Sbjct: 394 TWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAM 453

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           E+S  + ++V Y+ L+ G C + K++  +E+  S+  +G+  N   Y  ++    K+  L
Sbjct: 454 EKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSL 513

Query: 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFV 457
           ++  +L+  M + GC+P+   YNV ++      E+  ++     M  +  S+   T  F+
Sbjct: 514 DKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEFI 573

Query: 458 V 458
           +
Sbjct: 574 I 574



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 172/362 (47%), Gaps = 3/362 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A+  L +M +   +P+  V+  ++D LCK+  V EA  L  EM  +  +P+L  +  L+ 
Sbjct: 201 AVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQ 260

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C  G+  EA  +L +M   G  PD+ + N L+  + + GK+  A  ++  M   G  P
Sbjct: 261 GLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGP 320

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +Y  LI   C   KM EA R F  M   G   D+V +T+LI G+CK + I++   +L
Sbjct: 321 DVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLL 380

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + M + G +P+  T+  ++    +        EL   M K G VP++    V++   CK 
Sbjct: 381 EEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKE 440

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
             L EAV++   ME ++L      + +++ G    G L  A E F  + G+GL       
Sbjct: 441 NLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIY 500

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T+  ++  L +   ++ A+D+   +   GC  N   + +++  L +   +  +  Y   M
Sbjct: 501 TI--MIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIM 558

Query: 552 MD 553
            D
Sbjct: 559 RD 560



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 160/357 (44%), Gaps = 10/357 (2%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           +PN V    VY  ++  L K         L  EM  +  +P L+T   +  L++   +  
Sbjct: 214 KPNVV----VYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVT---YACLIQGLCNFG 266

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFT 247
             K+A  +LDEM K G  PD  +   L+DA CK   V +A  +   M    + P +  + 
Sbjct: 267 RWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYN 326

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           SL++ +C + K+ EA  V   M   G  PDIVV+ +L+ G+ +   +  A  LL+EM + 
Sbjct: 327 SLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKM 386

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  ++T LI   C+  +   A   F+ M + G   ++ T   ++ G CK   +   
Sbjct: 387 GFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEA 446

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +  +M +  +  N + Y  ++       +L    EL   +   G   +V  Y ++I+ 
Sbjct: 447 VSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKG 506

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            CK G L +A ++   ME     P   ++ V V G L +  +  + +Y   M  +G 
Sbjct: 507 LCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGF 563



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 169/371 (45%), Gaps = 13/371 (3%)

Query: 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM-PKYGCEP 207
            K++       L + M + KP L + + F +L+      +    AI ++  M    G E 
Sbjct: 52  GKLKNIDEALDLFQGMARMKP-LPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEA 110

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK----PSLRHFTSLLYGWCKEGKLVEAK 263
           D      +++ LC+   +K  A  F  +   FK    P++   T+L+ G C +G + +A 
Sbjct: 111 DTITLNIVINCLCR---LKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAV 167

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
            +   M+   +  D+  Y  L++G  + G    A   L++M  +   PN   Y+ ++  L
Sbjct: 168 GLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGL 227

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           C+   + EA     EM   G   ++VTY  LI G C   +      +LD M++ G+ P+ 
Sbjct: 228 CKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPD- 286

Query: 384 LTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           L  L+I++ A  K+ ++ +   ++G M   G  PDV  YN +I + C   ++ EA+ V++
Sbjct: 287 LQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFH 346

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M +    P    F  ++HG+     + +A    +EM   G +  P   T   L+    +
Sbjct: 347 LMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFV--PDVATWTTLIGGFCQ 404

Query: 503 AQKVEMAKDVW 513
           A +   AK+++
Sbjct: 405 AGRPLAAKELF 415



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           V+ +LI    K +       L+EEM K    P + T   +  L+  F  A     A E+ 
Sbjct: 359 VFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVAT---WTTLIGGFCQAGRPLAAKELF 415

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
             M KYG  P+      +LD LCK + + EA  L   M +     ++  ++ LL G C  
Sbjct: 416 LNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSA 475

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GKL  A  +   +   G + ++ +Y  ++ G  + G +  A +LL  M   GC PN  +Y
Sbjct: 476 GKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTY 535

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
            V +Q L   +++  + +    M   G   D  T   +I+
Sbjct: 536 NVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEFIIN 575



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVK 191
           +V     +  LI    +  +  A   L   M K  + P L T  V   ++       ++ 
Sbjct: 388 FVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAV---ILDGLCKENLLS 444

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
           +A+ +   M K   + +  ++  LLD +C    +  A +LF  +  +  + ++  +T ++
Sbjct: 445 EAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMI 504

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK+G L +A+ +L+ M++ G  P+   YN  + G     ++  + + L  MR KG  
Sbjct: 505 KGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFS 564

Query: 311 PNANSYTVLIQALCRME 327
            +A +   +I  L   E
Sbjct: 565 VDAATTEFIINYLSTNE 581



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 5/233 (2%)

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM-RKIGCVPDV 418
           K + ID   ++   M +   LP+   +  ++ A  + +     + L+  M   +G   D 
Sbjct: 53  KLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADT 112

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
              N+VI   C+L  +    +V   M    L P   +   +++G   QG + +A      
Sbjct: 113 ITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADH 172

Query: 479 MVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
           M      L    YG    L+N L +      A      +  +  + NV  ++  +  L  
Sbjct: 173 MEKMWYPLDVYTYG---VLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCK 229

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           +G V EA + C +M    V P   T+A L++GL      + A  + +++ KM 
Sbjct: 230 DGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMG 282


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 221/492 (44%), Gaps = 60/492 (12%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           ++     Y  ++  L    K    + L EEM++    +     + I++  F  A ++++A
Sbjct: 479 FIPDTSTYSKVLGYLCNASKMELAFLLFEEMKR-GGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYG 252
            +  +EM + GC P+   +  L+ A  K   V  A +LF+ M  E   P++  +++L+ G
Sbjct: 538 RKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597

Query: 253 WCKEGKLVEAKYVLVQM-----------------KDAGFEPDIVVYNNLLSGYAQMGKMT 295
            CK G++ +A  +  +M                  D    P++V+Y  LL G+ ++ ++ 
Sbjct: 598 HCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVE 657

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG------------ 343
           +A +LL  M  +GC+PN   Y  LI  LC++ K++EA     EM   G            
Sbjct: 658 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLI 717

Query: 344 -----------------------CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
                                  C  +VV YT +I G CK  K D  Y+++  M ++G  
Sbjct: 718 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 777

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN +TY  ++    +  ++E C+EL+  M   G  P+   Y V+I   CK G L  A N+
Sbjct: 778 PNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 837

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
             EM+          +  ++ GF  +   IE+     E +G+   +AP     + L+++L
Sbjct: 838 LEEMKQTHWPTHAAGYRKVIEGFNKE--FIESLGLLDE-IGQD-DTAPFLSLYRLLVDNL 893

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTI--WIHSLFSNGHVKEACSYCLDMMDADVMP 558
           ++AQ++EMA  +   + T    L  Y+ T    I SL     V +A     +M    V+P
Sbjct: 894 IKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIP 953

Query: 559 QPDTFAKLMRGL 570
           +  TF  L++GL
Sbjct: 954 EMQTFCSLIKGL 965



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 209/448 (46%), Gaps = 32/448 (7%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V     Y ALI +  K +K      L E M  E   P ++T   +  L+     A  
Sbjct: 551 PNVV----TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT---YSALIDGHCKAGQ 603

Query: 190 VKKAIEVLDEM-------------PKYGCE----PDEFVFGCLLDALCKNSSVKEAAKLF 232
           ++KA ++ + M              +Y  +    P+  ++G LLD  CK   V+EA KL 
Sbjct: 604 MEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLL 663

Query: 233 DEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           D M  E  +P+   + +L+ G CK GKL EA+ V  +M + GF   +  Y++L+  Y ++
Sbjct: 664 DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKV 723

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
            +   A ++L +M    C PN   YT +I  LC++ K +EA +    ME  GC+ +VVTY
Sbjct: 724 KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTY 783

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE-KKEELEECVELMGEMR 410
           T +I GF +  KI+ C E+L+ M  +G+ PN +TY  +++ H  K   L+    L+ EM+
Sbjct: 784 TAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTY-RVLIDHCCKNGALDVAHNLLEEMK 842

Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
           +       + Y  VI    K  E  E++ + +E+     +P    + ++V   +    L 
Sbjct: 843 QTHWPTHAAGYRKVIEGFNK--EFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLE 900

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
            A    +E+            T  +L+ SL  A KV+ A  ++S +  KG    +  +  
Sbjct: 901 MALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCS 960

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMP 558
            I  LF N  + EA    LD +   V P
Sbjct: 961 LIKGLFRNSKISEAL-LLLDFISHMVCP 987



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 208/455 (45%), Gaps = 33/455 (7%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS------VK 226
           + ++F  L+  + ++     A ++L +M K G  P   V+  L+ ++C +        ++
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLE 430

Query: 227 EAAKLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            A K + EM        K ++  FT  L   C  GK  +A  V+ +M   GF PD   Y+
Sbjct: 431 LAEKAYSEMLATGVVLNKINVSSFTRCL---CSAGKYEKAFSVIREMIGQGFIPDTSTYS 487

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            +L       KM  AF L +EM+R G   +  +YT+++ + C+   +E+A + F EM   
Sbjct: 488 KVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV 547

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           GC  +VVTYT LI  + K++K+    E+ ++M+  G LPN +TY  ++  H K  ++E+ 
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKA 607

Query: 403 VELMGEMRKIGCVPDVSNY------------NVVIRLA-----CKLGELKEAVNVWNEME 445
            ++   M     VPDV  Y            NVVI  A     CKL  ++EA  + + M 
Sbjct: 608 CQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMS 667

Query: 446 AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
                P    +  ++ G    G L EA E   EM   G   A  Y T  +L++   + ++
Sbjct: 668 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHG-FPATLY-TYSSLIDRYFKVKR 725

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
            ++A  V S ++   C  NV  +T  I  L   G   EA      M +    P   T+  
Sbjct: 726 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 785

Query: 566 LMRGLKKLYNRQIAAEITEKV-RKMAAERQITFKM 599
           ++ G  ++   +   E+ E++  K  A   +T+++
Sbjct: 786 MIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRV 820



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 210/487 (43%), Gaps = 54/487 (11%)

Query: 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
           +++WA +Q  Y H+  VY AL+  + +         L++++R +  + +  E   +L+R+
Sbjct: 151 FFVWAGRQIGYKHTSPVYNALVDLIVRDDDEKVPEELLQQIRDDDKE-VFGEFLNVLVRK 209

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL 243
           +  +     A+E L  +  +   P    + CL+ A  K   +  A+ +  EM      +L
Sbjct: 210 YCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMS---LANL 266

Query: 244 RH--FTSLLYGW--CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           R   FT   Y +  CK GK  EA   L  M+   F PD V Y  L+SG  +     +A +
Sbjct: 267 RMDGFTLRCYAYSLCKVGKWREA---LTLMETENFVPDTVFYTKLISGLCEASLFEEAMD 323

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
            L  MR   C PN  +Y+ L+      +++    R    M   GC      + +L+  +C
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYC 383

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTY---------------LHIM-LAHEKKEEL---- 399
            S      Y++L  M++ G  P  + Y                H++ LA +   E+    
Sbjct: 384 TSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATG 443

Query: 400 ---------------------EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
                                E+   ++ EM   G +PD S Y+ V+   C   +++ A 
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAF 503

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++ EM+   L     ++ +MV  F   G + +A ++F EM  R +   P   T  AL++
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEM--REVGCTPNVVTYTALIH 561

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
           + L+A+KV  A +++  ++++GC  N+  ++  I      G +++AC     M  +  +P
Sbjct: 562 AYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVP 621

Query: 559 QPDTFAK 565
             D + K
Sbjct: 622 DVDMYFK 628



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 215/503 (42%), Gaps = 36/503 (7%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMW-----ASKQPNYVHSYDVYRALIKSLSKMRK 153
           G    P +   +++    +G+  Y Y +          P YV    VY  LI S+    K
Sbjct: 367 GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYV----VYNILIGSICG-DK 421

Query: 154 FGAVWALMEEMRKEKPQLITTEVFV------ILMRRFASARMVKKAIEVLDEMPKYGCEP 207
                 L+E   K   +++ T V +         R   SA   +KA  V+ EM   G  P
Sbjct: 422 DSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIP 481

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D   +  +L  LC  S ++ A  LF+EM R      +  +T ++  +CK G + +A+   
Sbjct: 482 DTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWF 541

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M++ G  P++V Y  L+  Y +  K++ A EL + M  +GC PN  +Y+ LI   C+ 
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601

Query: 327 EKMEEANRAFVEM-----------------ERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            +ME+A + F  M                 + +    +VV Y  L+ GFCK  +++   +
Sbjct: 602 GQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARK 661

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +LD+M   G  PNQ+ Y  ++    K  +L+E  E+  EM + G    +  Y+ +I    
Sbjct: 662 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYF 721

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K+     A  V ++M   S +P    +  M+ G    G   EA +  + M  +G    P 
Sbjct: 722 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--CQPN 779

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T  A+++   R  K+E   ++   + +KG   N   + + I     NG +  A +   
Sbjct: 780 VVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 839

Query: 550 DMMDADVMPQPDTFAKLMRGLKK 572
           +M           + K++ G  K
Sbjct: 840 EMKQTHWPTHAAGYRKVIEGFNK 862


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 200/429 (46%), Gaps = 13/429 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           Y+H    +  ++  L    KF A   ++  M+ E   +++ ++ + + R +        +
Sbjct: 47  YLHDQSSFGYMVSRLVSANKFKAAEDIVARMKIENC-VVSEDILLSICRGYGRVHRPFDS 105

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
           + V  +M  + C+P +  +  +L  L + + +  A K +  MRE    P++     L+  
Sbjct: 106 LRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKA 165

Query: 253 WCKEGKLVEAKY-VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            C+    V+A   +  +M   G +PD   Y  L+SG  + G++ +A +L  EM  K C P
Sbjct: 166 LCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAP 225

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
              +YT LI  LC  + ++EA R   EM+  G E +V TY++L+ G CK  +  +  E+ 
Sbjct: 226 TVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + M+ RG  PN +TY  ++    K+++++E VEL+  M   G  PD   Y  VI   C +
Sbjct: 286 EMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAV 345

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVV-------MVHGFLGQGCLIEACEYFKEMVGRGL 484
            + +EA N  +EM    ++P   ++ +       +V G L       A   +  M  RG+
Sbjct: 346 SKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRG-LCTNYPSRAFTLYLSMRSRGI 404

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             + +  TL +L+  L +  + + A  +   IVT GC  N   W + I     N  V EA
Sbjct: 405 --SVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGTWKLLIGHTLDNTIVGEA 462

Query: 545 CSYCLDMMD 553
               L  +D
Sbjct: 463 SDSLLRDLD 471



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 119/276 (43%), Gaps = 3/276 (1%)

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           + +S+  ++  L    K + A      M+   C        ++  G+ +  +      + 
Sbjct: 50  DQSSFGYMVSRLVSANKFKAAEDIVARMKIENCVVSEDILLSICRGYGRVHRPFDSLRVF 109

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M      P+Q  Y+ ++    ++ +L    +    MR+IG  P V++ NV+I+  C+ 
Sbjct: 110 HKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRN 169

Query: 432 -GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G +   + +++EM      P + ++  ++ G    G + EA + F EMV +    AP  
Sbjct: 170 DGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--CAPTV 227

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +L+N L  ++ V+ A      +  KG E NV+ ++  +  L  +G   +A      
Sbjct: 228 VTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEM 287

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           MM     P   T+  L+ GL K    Q A E+ +++
Sbjct: 288 MMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRM 323


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/536 (24%), Positives = 239/536 (44%), Gaps = 43/536 (8%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNY 134
           E+  RILK F    P  E AL+   + + P L   ++ +     ++  +++ WA K+ N+
Sbjct: 57  ERFIRILKIFKWG-PDAEKALEVLKLKVDPRLVREIL-KIDVEVSVKIQFFKWAGKRRNF 114

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAI 194
            H    Y ALI+ L + R FG VW  +++M K    +   E+  I+ R    A+MV +A+
Sbjct: 115 EHDSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIV-RILGKAKMVNRAL 173

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSLLYG 252
            V  ++    C P    +  ++  L +    ++  +L++EM       P    +++L+  
Sbjct: 174 SVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISA 233

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           + K  +   A  +  +MK+ G +P   +Y  L+  Y ++GK+ +A  L+KEMR + C   
Sbjct: 234 FAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLT 293

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT LI+ L +  ++E+A   +  M + GC+ DVV    LI+   +S  +    ++ D
Sbjct: 294 VFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFD 353

Query: 373 SMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
            M      PN +TY  I+ +  E K  L E       M+K G VP    Y+++I   CK 
Sbjct: 354 EMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKT 413

Query: 432 GELKEAVNVWNEMEAASLSP--------------------------------GTDS---F 456
             +++A+ +  EM+     P                                G  S   +
Sbjct: 414 NRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVY 473

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
            VM+  F   G L EA   F EM  + L   P      AL+  ++RA++++ A  ++  +
Sbjct: 474 AVMIKHFGKCGRLNEAINLFNEM--KKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTM 531

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              GC  ++ +  I ++ L   G  K A      M ++ + P   +F  ++  L +
Sbjct: 532 EENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSR 587



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 169/348 (48%), Gaps = 5/348 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  L+    K+ K      L++EMR  +  L+T   +  L+R    +  V+ A      
Sbjct: 261 IYTTLMGIYFKVGKVEEALGLVKEMRARR-CLLTVFTYTELIRGLGKSGRVEDAYMTYKN 319

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCK-EG 257
           M K GC+PD  +   L++ L +++ +++A KLFDEM+     P++  + +++    + + 
Sbjct: 320 MLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKA 379

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L EA     +MK  G  P    Y+ L+ GY +  ++  A  LL+EM  KG  P   +Y 
Sbjct: 380 PLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYC 439

Query: 318 VLIQALCRMEKMEEANRAFVEM-ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
            LI  L   ++ + AN  F E+ E  GC +  V Y  +I  F K  +++    + + M +
Sbjct: 440 SLINTLGVAKRYDVANELFQELKENCGCSSARV-YAVMIKHFGKCGRLNEAINLFNEMKK 498

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G  P+   Y  +M    + E ++E   L   M + GC PD++++N+++    + G  K 
Sbjct: 499 LGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKG 558

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           A+ ++ +M+ +++ P   SF  ++      G   EA +  +EM  +G 
Sbjct: 559 ALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGF 606



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 7/269 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMR-KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           PN V     Y  +IKSL + +       +  E M+K+   + ++  + IL+  +     V
Sbjct: 362 PNVV----TYNTIIKSLFEAKAPLSEASSWFERMKKDG-IVPSSFTYSILIDGYCKTNRV 416

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK-PSLRHFTSL 249
           +KA+ +L+EM + G  P    +  L++ L        A +LF E++E     S R +  +
Sbjct: 417 EKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVM 476

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + K G+L EA  +  +MK  G  PD+  YN L++G  +  +M +AF L + M   GC
Sbjct: 477 IKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGC 536

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+ NS+ +++  L R    + A   F +M+ S  + DVV++ T++    ++   +   +
Sbjct: 537 TPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAK 596

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           ++  M  +G   + +TY  I+ A  K ++
Sbjct: 597 LMQEMSSKGFQYDLITYSSILEAVGKVDD 625


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 168/316 (53%), Gaps = 3/316 (0%)

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           KL DEMR++   P +  +  +L G C+EG++ +A   L  +   G EP+ V YN +L G 
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
               +  DA +L++EM  KGC PN  ++ +LI  LCR   +E A     ++ + GC  + 
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           ++Y  L+  FCK +K+D+    ++ M+ RG  P+ ++Y  ++ A  +  E++  ++L+ +
Sbjct: 122 LSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQ 181

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           ++  GC P + +YN VI    K G+ KEA+ + +EM +  L P   ++  +  G   +  
Sbjct: 182 LKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDK 241

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
           + EA   F ++   G+   P      A+L  L + ++   A D++S +++ GC  N   +
Sbjct: 242 IEEAIRTFCKVQDMGI--RPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTY 299

Query: 529 TIWIHSLFSNGHVKEA 544
           TI +  L   G VKEA
Sbjct: 300 TILVEGLAYEGLVKEA 315



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 170/330 (51%), Gaps = 6/330 (1%)

Query: 160 LMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
           L++EMR +   P +IT   + +++        V  A+E L+ +P YG EP+   +  +L 
Sbjct: 3   LLDEMRDKGCAPDIIT---YNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLK 59

Query: 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
            L      ++A KL +EM  +   P++  F  L+   C+ G +  A  VL Q+   G  P
Sbjct: 60  GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTP 119

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + + YN LL  + +  KM  A   ++ M  +GC P+  SY  L+ ALCR  +++ A    
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLL 179

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            +++  GC   +++Y T+I G  K+ K     E+LD MI +G+ P+ +TY  I     ++
Sbjct: 180 HQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCRE 239

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
           +++EE +    +++ +G  P V  YN ++   CK  E   A+++++ M +    P   ++
Sbjct: 240 DKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTY 299

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
            ++V G   +G + EA +   ++  RG+++
Sbjct: 300 TILVEGLAYEGLVKEARDLLGQLCSRGVVN 329



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 153/306 (50%), Gaps = 2/306 (0%)

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
           +L +M+D G  PDI+ YN +L+G  Q G++ DA E L+ +   G +PN  SY ++++ L 
Sbjct: 3   LLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLF 62

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
             E+ E+A +   EM   GC  +VVT+  LIS  C+   ++   E+L+ + + G  PN L
Sbjct: 63  TAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSL 122

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
           +Y  ++ A  K++++++ +  +  M   GC PD+ +YN ++   C+ GE+  A+++ +++
Sbjct: 123 SYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQL 182

Query: 445 EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504
           +    SP   S+  ++ G    G   EA E   EM+ +GL   P   T   + + L R  
Sbjct: 183 KGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGL--QPDIITYTTIASGLCRED 240

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           K+E A   +  +   G    V  +   +  L        A      M+    MP   T+ 
Sbjct: 241 KIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYT 300

Query: 565 KLMRGL 570
            L+ GL
Sbjct: 301 ILVEGL 306



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 107/249 (42%), Gaps = 37/249 (14%)

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM   GC  D++TY  +++G C+  ++D   E L+++   G  PN ++Y  ++      E
Sbjct: 6   EMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAE 65

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
             E+  +LM EM   GC P+V  +N++I   C+ G ++ A+ V  ++     +P + S+ 
Sbjct: 66  RWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYN 125

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            ++H F  Q                                     +K++ A      +V
Sbjct: 126 PLLHAFCKQ-------------------------------------KKMDKAMAFVELMV 148

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQ 577
           ++GC  ++ ++   + +L  NG V  A      +      P   ++  ++ GL K    +
Sbjct: 149 SRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTK 208

Query: 578 IAAEITEKV 586
            A E+ +++
Sbjct: 209 EALELLDEM 217



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 2/185 (1%)

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           ++L+ EMR  GC PD+  YNVV+   C+ G + +A+     + +    P T S+ +++ G
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                   +A +  +EM  +G    P   T   L++ L R   VE A +V   I   GC 
Sbjct: 61  LFTAERWEDAEKLMEEMAHKG--CPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCT 118

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            N  ++   +H+      + +A ++   M+     P   ++  L+  L +     +A ++
Sbjct: 119 PNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDL 178

Query: 583 TEKVR 587
             +++
Sbjct: 179 LHQLK 183


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 198/400 (49%), Gaps = 5/400 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + IL++         +A ++L  M + G  C PD   +  ++D   K   V +A  LF E
Sbjct: 185 YSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKE 244

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R   P    ++S+++  CK   + +A+  L QM + G  P+   YNNL+ GY+  G+
Sbjct: 245 MVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQ 304

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A  + KEMRR    P+  + ++L+ +LC+  K++EA   F  M   G   +V +YT 
Sbjct: 305 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTI 364

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +++G+     +    ++ D M+  GI P+  T+  ++ A+     L++ + +  EMR  G
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PDV  Y  VI   C++G++ +A+  +N+M    ++P   ++  ++ GF   G L++A 
Sbjct: 425 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E   E++  G+     +    +++N+L +  +V  A++++   V  G       +++ + 
Sbjct: 485 ELISEIMNNGMHLDIVF--FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMD 542

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
                G +++A      M+ A + P    +  L+ G  K+
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKI 582



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 192/410 (46%), Gaps = 6/410 (1%)

Query: 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223
           M+ + P + +   + I++  +A+   +    ++ D M   G  PD + F  L+ A     
Sbjct: 352 MKGQNPNVFS---YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCG 408

Query: 224 SVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
            + +A  +F+EMR+   KP +  + +++   C+ GK+ +A     QM D G  PD   Y+
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L+ G+   G +  A EL+ E+   G   +   ++ +I  LC++ ++ +A   F      
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV 528

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G     V Y+ L+ G+C   K+++   + D+M+  GI PN + Y  ++  + K   ++E 
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEG 588

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L  EM + G  P    YN++I    + G    A   ++EM  + ++    ++ +++ G
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE 522
                C  EA   FKE+  R +       TL  ++  + + ++VE AKD+++ I   G  
Sbjct: 649 LFKNRCFDEAIFLFKEL--RAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV 706

Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             V  ++I I +L   G V+EA      M +A   P       ++R L K
Sbjct: 707 PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLK 756



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 186/372 (50%), Gaps = 3/372 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F +L++ +A+  M+ KA+ + +EM  +G +PD   +  ++ ALC+   + +A + F++M 
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           ++   P    +  L+ G+C  G L++AK ++ ++ + G   DIV ++++++   ++G++ 
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 516

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA  +       G  P A  Y++L+   C + KME+A R F  M  +G E + V Y TL+
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLV 576

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G+CK  +ID    +   M+Q+GI P+ + Y  I+    +            EM + G  
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIA 636

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +   YN+V+R   K     EA+ ++ E+ A ++     +   M+ G      + EA + 
Sbjct: 637 MNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDL 696

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F  +   GL+  P   T   ++ +L++   VE A+D++S +   GCE +       +  L
Sbjct: 697 FASISRSGLV--PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVREL 754

Query: 536 FSNGHVKEACSY 547
                +  A +Y
Sbjct: 755 LKKNEIVRAGAY 766



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 179/401 (44%), Gaps = 9/401 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LIK+ +          +  EMR    KP ++T    +  + R      +  A+E  +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK---MDDAMEKFN 453

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           +M   G  PD++ + CL+   C + S+ +A +L  E M       +  F+S++   CK G
Sbjct: 454 QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 513

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++++A+ +     + G  P  VVY+ L+ GY  +GKM  A  +   M   G +PN   Y 
Sbjct: 514 RVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYG 573

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C++ +++E    F EM + G +   + Y  +I G  ++ +          M + 
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES 633

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           GI  N+ TY  ++    K    +E + L  E+R +    ++   N +I    +   ++EA
Sbjct: 634 GIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEA 693

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
            +++  +  + L P   ++ +M+   + +G + EA + F  M   G    P    L  ++
Sbjct: 694 KDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG--CEPDSRLLNHVV 751

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
             LL+  ++  A    S I  +   L  +  T+ +  LFS+
Sbjct: 752 RELLKKNEIVRAGAYLSKIDERNFSLE-HLTTMLLVDLFSS 791



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 138/280 (49%), Gaps = 3/280 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
           V  A  + D     G  P   V+  L+D  C    +++A ++FD M     +P+   + +
Sbjct: 515 VMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+CK G++ E   +  +M   G +P  ++YN ++ G  + G+   A     EM   G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
              N  +Y ++++ L +    +EA   F E+     + +++T  T+I+G  ++R+++   
Sbjct: 635 IAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAK 694

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEEL-EECVELMGEMRKIGCVPDVSNYNVVIRL 427
           ++  S+ + G++P  +TY  IM+ +  KE L EE  ++   M+  GC PD    N V+R 
Sbjct: 695 DLFASISRSGLVPCVVTY-SIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRE 753

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
             K  E+  A    ++++  + S    + +++V  F  +G
Sbjct: 754 LLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKG 793



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 125/264 (47%), Gaps = 38/264 (14%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P +++Y +L+    R  + E A   F ++ R+G   +++    L+ GFC++++ D   E 
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTD---EA 165

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD ++ R                                 ++GCVPDV +Y+++++  C 
Sbjct: 166 LDILLHR-------------------------------TPELGCVPDVFSYSILLKSLCD 194

Query: 431 LGELKEAVNVWNEME--AASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            G+  +A ++   M    A  SP   ++  ++ GF  +G + +AC+ FKEMV RG+   P
Sbjct: 195 QGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGI--PP 252

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            + T  +++++L +A+ ++ A+     +V KG   N + +   I+   S G  KEA    
Sbjct: 253 DFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVF 312

Query: 549 LDMMDADVMPQPDTFAKLMRGLKK 572
            +M    ++P   T + LM  L K
Sbjct: 313 KEMRRHSILPDVVTLSMLMGSLCK 336


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 229/519 (44%), Gaps = 35/519 (6%)

Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           A+ QP+      +Y A+++SL +++ F     ++  M   + +L +  V+ +L+     +
Sbjct: 125 ANVQPDIY----IYSAVVRSLCELKDFNKAKEMIHWMEFNQCKL-SIVVYNVLIHGLCKS 179

Query: 188 RMVKKAIEV--------------------------LDEMPKYGCEPDEFVFGCLLDALCK 221
           R + +A+E+                            EM + G   +   +  L+D+ C+
Sbjct: 180 RRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCR 239

Query: 222 NSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
              +  A    D+M +   + ++  + SL+ G+CK G    AKY   +M D G  P +V 
Sbjct: 240 RGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVT 299

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y +L+SGY   G+   AF++  EM  KG  PN  ++T +I  LCR   M EA R F EM+
Sbjct: 300 YTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMK 359

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
                   VTY  +I G C+S  I   + +LD M+ +G +P+  TY  ++        + 
Sbjct: 360 ERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVS 419

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  E + ++ K     +   Y+ ++   CK G  K+AV+    M    ++     + +++
Sbjct: 420 EAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILI 479

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
            G   +          KEM   GL   P       +++   +A  ++ A  +W  +V +G
Sbjct: 480 DGTAREHDTRALFGLLKEMHNHGL--RPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEG 537

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
           C  NV  +T  I+ L   G + +A     + + +DV P   T+   +  L +  N + A 
Sbjct: 538 CLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAV 597

Query: 581 EITEKVRKMAAERQITFKMYKRRGERDLK-EKAKKQVDG 618
           ++   + K      +++ +  R   R  K E+A K + G
Sbjct: 598 QLHHAMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHG 636



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 191/439 (43%), Gaps = 38/439 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI    K+    A     +EM  +K    T   +  L+  + +     KA +V +EM
Sbjct: 265 YNSLINGYCKLGNASAAKYYFDEM-IDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEM 323

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  P+ + F  ++  LC+ + + EA +LF EM+ER   PS   +  ++ G C+ G +
Sbjct: 324 TAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNI 383

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA ++L +M   GF PD   Y  L+SG   +G++++A E + ++ +     N   Y+ L
Sbjct: 384 SEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSAL 443

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +   C+  + ++A  A   M   G   D+V Y  LI G  +       + +L  M   G+
Sbjct: 444 VHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGL 503

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ + Y +++  H K   L+E   L   M   GC+P+V  Y  +I   CK G + +A  
Sbjct: 504 RPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAEL 563

Query: 440 VWNEMEAASLSPG----------------------------------TDSFVVMVHGFLG 465
           +  E   + ++P                                   T S+ +++ GF  
Sbjct: 564 LSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCR 623

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G + EA +    M    +L  P Y T   ++    +   ++ A  +W  ++ KG + + 
Sbjct: 624 LGKIEEATKLLHGMTDNDIL--PDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDT 681

Query: 526 YAWTIWIHSLFSNGHVKEA 544
            A++  +H     G +++A
Sbjct: 682 LAYSFLVHGCCIAGELEKA 700



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 184/402 (45%), Gaps = 15/402 (3%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P++ T    +  + RF   R     + + D++     +PD +++  ++ +LC+     +A
Sbjct: 94  PEVRTLSALLNGLLRF---RRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKA 150

Query: 229 AKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++   M   + K S+  +  L++G CK  ++ EA  +   +   G E ++V Y      
Sbjct: 151 KEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY------ 204

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
               GK  +A  L KEM  KG   N  +Y++LI + CR  +M+ A     +M ++  E  
Sbjct: 205 ---YGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFT 261

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V  Y +LI+G+CK           D MI +G+ P  +TY  ++  +  + E  +  ++  
Sbjct: 262 VYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYN 321

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM   G  P+   +  +I   C+   + EA+ ++ EM+   + P   ++ VM+ G    G
Sbjct: 322 EMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSG 381

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            + EA     EMVG+G +  P   T + L++ L    +V  AK+    +     +LN   
Sbjct: 382 NISEAFHLLDEMVGKGFV--PDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMC 439

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           ++  +H     G  K+A S C  M++  V      +A L+ G
Sbjct: 440 YSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDG 481



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 175/382 (45%), Gaps = 38/382 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDE 199
           + A+I  L +         L  EM++ K  ++ +EV + +++     +  + +A  +LDE
Sbjct: 335 FTAIISGLCRANMMAEAIRLFGEMKERK--IMPSEVTYNVMIEGHCRSGNISEAFHLLDE 392

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M   G  PD + +  L+  LC    V EA +  D++ ++  K +   +++L++G+CKEG+
Sbjct: 393 MVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGR 452

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             +A      M + G   D+V Y  L+ G A+       F LLKEM   G  P+A  YT 
Sbjct: 453 FKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTN 512

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I    +   ++EA   +  M   GC  +VVTYT LI+G CK+  +D+   +    +   
Sbjct: 513 MIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSD 572

Query: 379 ILPNQLTY-------------------LHIML---------------AHEKKEELEECVE 404
           + PN +TY                    H ML                  +  ++EE  +
Sbjct: 573 VTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGKIEEATK 632

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L+  M     +PD   Y+ +I   CK   L+EA+ +W+ M    L P T ++  +VHG  
Sbjct: 633 LLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCC 692

Query: 465 GQGCLIEACEYFKEMVGRGLLS 486
             G L +A E   EM+ RG+ S
Sbjct: 693 IAGELEKAFELRDEMIRRGMRS 714



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 139/301 (46%), Gaps = 11/301 (3%)

Query: 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328
           MKD    P++   + LL+G  +  +  D   L  ++      P+   Y+ ++++LC ++ 
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKD 146

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLH 388
             +A      ME + C+  +V Y  LI G CKSR+I    EI + ++Q+G+  N +TY  
Sbjct: 147 FNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY-- 204

Query: 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448
               + K  E E   + MGE    G   +   Y+++I   C+ GE+  A+   ++M  AS
Sbjct: 205 ----YGKFNEAELLFKEMGEK---GLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKAS 257

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508
           +      +  +++G+   G    A  YF EM+ +GL   P   T  +L++      +   
Sbjct: 258 IEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGL--TPTVVTYTSLISGYCNEGEWHK 315

Query: 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568
           A  V++ +  KG   N Y +T  I  L     + EA     +M +  +MP   T+  ++ 
Sbjct: 316 AFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIE 375

Query: 569 G 569
           G
Sbjct: 376 G 376



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 13/251 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI   ++     A++ L++EM     +P  +   ++  ++ R + A  +K+A  + D
Sbjct: 475 YAILIDGTAREHDTRALFGLLKEMHNHGLRPDAV---IYTNMIDRHSKAGNLKEAFGLWD 531

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
            M   GC P+   +  L++ LCK   + +A  L  E +     P+   +   L    + G
Sbjct: 532 IMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGG 591

Query: 258 KLVEAKYVLVQMKDA---GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
            + +A    VQ+  A   GF    V YN L+ G+ ++GK+ +A +LL  M      P+  
Sbjct: 592 NMEKA----VQLHHAMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYI 647

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
           +Y+ +I   C+   ++EA + +  M   G + D + Y+ L+ G C + ++++ +E+ D M
Sbjct: 648 TYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEM 707

Query: 375 IQRGILPNQLT 385
           I+RG+  N +T
Sbjct: 708 IRRGMRSNHVT 718



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 117/286 (40%), Gaps = 60/286 (20%)

Query: 72  HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPG--LTERVINRCGDAGNLGYRYYMW-- 127
           HD   +F +LK+ H+               LRP   +   +I+R   AGNL   + +W  
Sbjct: 486 HDTRALFGLLKEMHNH-------------GLRPDAVIYTNMIDRHSKAGNLKEAFGLWDI 532

Query: 128 ---ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184
                  PN V     Y ALI  L K         LM+     K +L++ E  V      
Sbjct: 533 MVDEGCLPNVV----TYTALINGLCKA-------GLMD-----KAELLSKETLV------ 570

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR 244
                                 P+   +GC LD L +  ++++A +L   M + F  +  
Sbjct: 571 ------------------SDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTV 612

Query: 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304
            +  L+ G+C+ GK+ EA  +L  M D    PD + Y+ ++    +   + +A +L   M
Sbjct: 613 SYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTM 672

Query: 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
             KG  P+  +Y+ L+   C   ++E+A     EM R G  ++ VT
Sbjct: 673 LDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 210/434 (48%), Gaps = 10/434 (2%)

Query: 141 YRALIKSLSKMRKFGAV--WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+ +L +  K+     + L  E     P L   + + IL++     +   KA E+L+
Sbjct: 92  YNSLLNALIESNKWDEAESFFLYFETMGLSPNL---QTYNILIKISCRKKQFDKAKELLN 148

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
            M   G  PD F +G L+++L KN  + +A KLFDEM ER   P +  +  L+ G+ K+G
Sbjct: 149 WMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG 208

Query: 258 KLVEAKYVLVQ-MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            ++ A  +  + +K     P+I  YN +++G  + GK  ++FE+   M++     +  +Y
Sbjct: 209 DILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTY 268

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           + LI  LC    ++ A R + EM  +G   DVV Y T+++G+ ++ +I+ C E+   M +
Sbjct: 269 STLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEK 328

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
            G     ++Y  ++    +  +++E + +   + +  C  D   Y V++   CK G L +
Sbjct: 329 EGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 387

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           A+++  E E       T ++  M++G   +G L E      +M   G    P      A+
Sbjct: 388 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHG--CKPNPYVCNAV 445

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           +N  +RA K+E A   +  +V+KGC   V  +   I+ L       EA +   +M+    
Sbjct: 446 INGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGW 505

Query: 557 MPQPDTFAKLMRGL 570
            P   T++ LM GL
Sbjct: 506 KPNMITYSLLMNGL 519



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 229/476 (48%), Gaps = 15/476 (3%)

Query: 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMR 182
           +MW       V SY     LI SL+K         L +EM +     +T +V  + IL+ 
Sbjct: 149 WMWGQGFSPDVFSYG---TLINSLAKNGYMSDALKLFDEMPERG---VTPDVACYNILID 202

Query: 183 RFASARMVKKAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK- 240
            F     +  A E+ + + K     P+   +  +++ LCK     E+ +++  M++  + 
Sbjct: 203 GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG 262

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
             L  +++L++G C  G L  A  V  +M + G  PD+VVYN +L+GY + G++ +  EL
Sbjct: 263 QDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 322

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
            K M ++GC     SY +LI+ L    K++EA   +  +    C AD +TY  L+ G CK
Sbjct: 323 WKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCK 381

Query: 361 SRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           +  +++   IL+     RG L +   Y  ++    ++  L+E   ++ +M K GC P+  
Sbjct: 382 NGYLNKALSILEEAENGRGDL-DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPY 440

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
             N VI    +  +L++A+  +  M +    P   ++  +++G        EA    KEM
Sbjct: 441 VCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEM 500

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           + +G    P   T   L+N L + +K++MA ++W   + KG + +V    I IH L S+G
Sbjct: 501 LQKGW--KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 558

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
            V++A     +M   + +P   T   LM G  K+ + + A++I + + +   +  I
Sbjct: 559 KVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDI 614



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 207/477 (43%), Gaps = 77/477 (16%)

Query: 130 KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASAR 188
           K P+   +   Y  +I  L K  KF   + +   M+K E+ Q + T  +  L+     + 
Sbjct: 222 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT--YSTLIHGLCGSG 279

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVF--------------------------GC-------- 214
            +  A  V  EM + G  PD  V+                          GC        
Sbjct: 280 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNI 339

Query: 215 LLDALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272
           L+  L +N+ V EA  +++ + E+     S+  +  L++G CK G L +A  +L + ++ 
Sbjct: 340 LIRGLFENAKVDEAISIWELLPEKDCCADSMT-YGVLVHGLCKNGYLNKALSILEEAENG 398

Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
             + D   Y+++++G  + G++ +   +L +M + GC PN      +I    R  K+E+A
Sbjct: 399 RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDA 458

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            R F  M   GC   VVTY TLI+G  K+ +    Y ++  M+Q+G  PN +TY  +M  
Sbjct: 459 LRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNG 518

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
             + ++L+  + L  +  + G  PDV  +N++I   C  G++++A+ +++EM+  +  P 
Sbjct: 519 LCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPN 578

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             +   ++ GF                                      + +  E A  +
Sbjct: 579 LVTHNTLMEGF-------------------------------------YKVRDFERASKI 601

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           W  I+  G + ++ ++ I +  L S   + +A  +  D +D  V+P   T+  L++G
Sbjct: 602 WDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQG 658



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 178/369 (48%), Gaps = 8/369 (2%)

Query: 141 YRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
           Y  LI+ L   +K+ +  ++W    E+  EK     +  + +L+        + KA+ +L
Sbjct: 337 YNILIRGLFENAKVDEAISIW----ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 392

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKE 256
           +E      + D F +  +++ LC+   + E A + D+M +   KP+     +++ G+ + 
Sbjct: 393 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRA 452

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            KL +A      M   G  P +V YN L++G ++  + ++A+ L+KEM +KG  PN  +Y
Sbjct: 453 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITY 512

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           ++L+  LC+ +K++ A   + +    G + DV  +  +I G C S K++   ++   M Q
Sbjct: 513 SLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQ 572

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           R  +PN +T+  +M    K  + E   ++   + + G  PD+ +YN+ ++  C    + +
Sbjct: 573 RNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISD 632

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
           AV   N+     + P   ++ ++V G+L     +E       M G   +    +G +   
Sbjct: 633 AVGFLNDAVDRGVLPTAITWNILVQGYLALKGYMEPVFVPASMKGNPGMQMRYFGFVCDK 692

Query: 497 LNSLLRAQK 505
           L+S L  Q+
Sbjct: 693 LSSPLDVQQ 701



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 208/506 (41%), Gaps = 90/506 (17%)

Query: 180 LMRRFASARMVKKAIEVLDEMPKY-GCEPDEFVFGCLL----------DALCKNSSVKEA 228
           +++   S +    A+ + D + ++ G     +VF  +L           A  KNS   +A
Sbjct: 13  VIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAYAKNSMPDQA 72

Query: 229 AKLFDEMRERF--KPSLRHFTSLLYG------W--------------------------- 253
             +F  M E F  +P +R + SLL        W                           
Sbjct: 73  LDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIK 132

Query: 254 --CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD- 310
             C++ +  +AK +L  M   GF PD+  Y  L++  A+ G M+DA +L  EM  +G   
Sbjct: 133 ISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTP 192

Query: 311 -----------------------------------PNANSYTVLIQALCRMEKMEEANRA 335
                                              PN  SY V+I  LC+  K +E+   
Sbjct: 193 DVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEI 252

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           +  M+++    D+ TY+TLI G C S  +D    +   M + G+ P+ + Y  ++  + +
Sbjct: 253 WHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLR 312

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
              +EEC+EL   M K GC   VS YN++IR   +  ++ EA+++W  +        + +
Sbjct: 313 AGRIEECLELWKVMEKEGCRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMT 371

Query: 456 FVVMVHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           + V+VHG    G L +A    +E   GRG L    Y +   ++N L R  +++    V  
Sbjct: 372 YGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS---MINGLCREGRLDEVAGVLD 428

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574
            +   GC+ N Y     I+       +++A  +  +M+     P   T+  L+ GL K  
Sbjct: 429 QMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 488

Query: 575 NRQIA-AEITEKVRKMAAERQITFKM 599
               A A + E ++K      IT+ +
Sbjct: 489 RFSEAYALVKEMLQKGWKPNMITYSL 514


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 194/399 (48%), Gaps = 4/399 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + I+++R       ++A+++L  M K    C PD   +  ++    K   + +A  L+ E
Sbjct: 82  YAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHE 141

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M ++ F P +    S++   CK   +  A+ +L QM D G  P+ V Y +++ GY+ +G+
Sbjct: 142 MMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGR 201

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A ++ +EM  +G  P+  S+   + +LC+  + +EA   F  M   G   ++VTY  
Sbjct: 202 WEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGI 261

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+ G+             ++M   GI+ N L +  ++ A+ K+  ++E + ++ EM+  G
Sbjct: 262 LLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQG 321

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PDV  Y+ +I   C++G L +AV+ +N+M    + P T  +  ++ GF   G L++A 
Sbjct: 322 LSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAK 381

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E   EM+  G +  P      ++++S+ +  +V  A  ++  +   G   ++  +   I 
Sbjct: 382 ELVYEMMNNG-IPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLID 440

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                G + +A S    M+ A + P   T+  L+ G  K
Sbjct: 441 GYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFK 479



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 195/428 (45%), Gaps = 11/428 (2%)

Query: 124 YYMWASK--QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           +Y  A+K  +PN V     Y  L+   +    F  + +    M+ +   +    VF IL+
Sbjct: 244 FYSMAAKGHRPNIV----TYGILLHGYATEGCFADMMSFFNTMKGDG-IVANCLVFTILI 298

Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFK 240
             +A   M+ +A+ +L EM   G  PD F +  L+ ALC+   + +A   F++M     +
Sbjct: 299 DAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQ 358

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMGKMTDAFE 299
           P+   + SL+ G+C  G LV+AK ++ +M + G   P+I  +N+++    + G++ DA  
Sbjct: 359 PNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHH 418

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
           +   ++  G   +   +  LI   C + +M +A      M  +G   D  TY TL++G+ 
Sbjct: 419 IFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYF 478

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
           KS +ID    +   M  + I P  +TY  I+    +        +++ EM   G    + 
Sbjct: 479 KSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLP 538

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            YN++++  C+     EA+ ++ ++   ++     +   M++         EA + F  +
Sbjct: 539 TYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAI 598

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
              GL+  P   T   ++ +LL+   VE A +++S +   GC          I +L   G
Sbjct: 599 SDSGLV--PNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKG 656

Query: 540 HVKEACSY 547
            + +A +Y
Sbjct: 657 EIVKAGNY 664



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 163/346 (47%), Gaps = 3/346 (0%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI +L +M +         +M     Q   T V+  L++ F +   + KA E++ EM
Sbjct: 329 YSTLISALCRMGRLADAVDKFNQMIGTGVQ-PNTVVYHSLIQGFCTHGDLVKAKELVYEM 387

Query: 201 PKYGC-EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS-LRHFTSLLYGWCKEGK 258
              G   P+   F  ++ ++CK   V +A  +FD +++  + S +  F +L+ G+C  G+
Sbjct: 388 MNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGE 447

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  VL  M  AG  PD   YN L++GY + G++ D   L +EM  K   P   +Y +
Sbjct: 448 MGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNI 507

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++  L R  +   A +   EM   G    + TY  ++ G C++   D    +   +    
Sbjct: 508 ILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMN 567

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           +  N  T   ++ +    +  EE  +L   +   G VP+ S Y ++IR   K G ++EA 
Sbjct: 568 VKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEAD 627

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           N+++ ME +  +P +      +   L +G +++A  Y  ++ G+ +
Sbjct: 628 NMFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKVDGKSI 673



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 159/368 (43%), Gaps = 40/368 (10%)

Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE- 299
           P++  +  ++ G C+  +         ++   G + D    N +L       +  DA + 
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM--ERSGCEADVVTYTTLISG 357
           LL+ M   GC P+A SY ++++ LC   + ++A      M  E   C  DVVTY T+I G
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 358 F-----------------------------------CKSRKIDRCYEILDSMIQRGILPN 382
           F                                   CK+R +D    +L  M+  G+ PN
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442
           ++TY  ++  +      EE  ++  EM   G +PD+ ++N  +   CK G  KEA  ++ 
Sbjct: 186 KVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFY 245

Query: 443 EMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502
            M A    P   ++ +++HG+  +GC  +   +F  M G G+++     T+  L+++  +
Sbjct: 246 SMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTI--LIDAYAK 303

Query: 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
              ++ A  + S +  +G   +V+ ++  I +L   G + +A      M+   V P    
Sbjct: 304 RGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVV 363

Query: 563 FAKLMRGL 570
           +  L++G 
Sbjct: 364 YHSLIQGF 371



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 38/274 (13%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P   +Y V++   CR  + E     F  + R+G +AD     T++   C +++ D   ++
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           L                                  +  M ++GCVPD  +Y +V++  C 
Sbjct: 66  L----------------------------------LRRMTELGCVPDAFSYAIVLKRLCD 91

Query: 431 LGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
               ++A+++   M  E    SP   ++  ++HGF  +G + +AC  + EM+ +G +  P
Sbjct: 92  DNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFV--P 149

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
              T  +++N+L +A+ V+ A+ +   +V  G   N   +T  IH   + G  +EA    
Sbjct: 150 DVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMF 209

Query: 549 LDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
            +M    ++P   ++   M  L K    + AAEI
Sbjct: 210 REMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEI 243


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 180/356 (50%), Gaps = 14/356 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV--FVILMRRFASARMVKKAIEVLD 198
           Y  LI  L K+   G   A ++ +R+   +L+   V  +  ++      ++V +A ++  
Sbjct: 146 YGTLINGLCKV---GQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 202

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  PD   +  L+        +K+A  LF++M  E  KP +  F  L+ G+CK+G
Sbjct: 203 EMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDG 262

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ E K V   M   G +P++V Y +L+ GY  + ++  A  +   M + G +P+  SY 
Sbjct: 263 KMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYN 322

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I   C+++K++EA   F +M       +VVTYT+LI G CKS KI    +++D M  R
Sbjct: 323 IMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDR 382

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI--------GCVPDVSNYNVVIRLAC 429
           G+ P+ +TY  I+ A  K  ++++ + L+ +++          G   DV  Y V+I+  C
Sbjct: 383 GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFC 442

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             G   EA+ + ++ME     P   ++ +++     +     A +  +EM+ RGLL
Sbjct: 443 VKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLL 498



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 203/442 (45%), Gaps = 36/442 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  ++ SL K+  +    +L  +M  +     L+T     IL+  F+       +  V  
Sbjct: 63  FGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLN---ILINCFSQLGQNPLSFSVFA 119

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            + K G +P+      L+  LC   S                     + +L+ G CK G+
Sbjct: 120 NILKKGYDPNVITLTTLIKGLCLKVS---------------------YGTLINGLCKVGQ 158

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
              A  +L ++     +P++V+YN ++    ++  + +AF+L  EM  +G  P+  +Y+ 
Sbjct: 159 ARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSA 218

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI     + K+++A   F +M     + DV T+  L+ GFCK  K+     +   M+++G
Sbjct: 219 LISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQG 278

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I PN +TY  +M  +   +++ +   +   M + G  PD  +YN++I   CK+ ++ EA+
Sbjct: 279 IKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAM 338

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           N++ +M   ++ P   ++  ++ G    G +  A +   EM  RG+   P   T  ++L+
Sbjct: 339 NLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGV--PPDIITYSSILD 396

Query: 499 SLLRAQKVEMA-------KD-VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
           +L +  +V+ A       KD V+  +  KG  L+VYA+T+ I      G   EA +    
Sbjct: 397 ALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSK 456

Query: 551 MMDADVMPQPDTFAKLMRGLKK 572
           M D   +P   T+  ++  L K
Sbjct: 457 MEDNGRIPDAKTYEIIILSLFK 478



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 118/270 (43%), Gaps = 32/270 (11%)

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           + +K   P    +  ++ +L ++     A     +ME  G  +++VT   LI+ F +  +
Sbjct: 51  LHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQ 110

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
               + +  +++++G  PN +T   ++           C+++              +Y  
Sbjct: 111 NPLSFSVFANILKKGYDPNVITLTTLIKGL--------CLKV--------------SYGT 148

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI----EACEYFKEM 479
           +I   CK+G+ + A+ +   ++   + P     VVM +  +   C +    EA + + EM
Sbjct: 149 LINGLCKVGQARAALQLLRRVDGKLVQPN----VVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539
           V  G+  +P   T  AL++      K++ A D+++ ++ +  + +VY + I +     +G
Sbjct: 205 VSEGI--SPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDG 262

Query: 540 HVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
            +KE  +    MM   + P   T+  LM G
Sbjct: 263 KMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 292


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 219/491 (44%), Gaps = 35/491 (7%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKK 192
           + SY+++   ++ L +  KF     ++++M  +   P + +   + ILM       M+  
Sbjct: 326 LQSYNIW---LQGLVRHGKFIEAETVLKQMIDKGIGPSIYS---YNILMDGLCKLGMLSD 379

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
           A  ++  M + G  PD   +GCLL   C    V  A  L  EM R    P+      LL+
Sbjct: 380 AKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLH 439

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--- 308
                G++ EA+ +L +M + G+  D V  N ++ G    G++  A E++K MR  G   
Sbjct: 440 SLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAA 499

Query: 309 --------------------CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
                               C P+  +Y+ L+  LC+  +  EA   F EM     + D 
Sbjct: 500 LGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDS 559

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
           + Y   I  FCK  KI   + +L  M ++G   +  TY  ++L    K ++ E   LM E
Sbjct: 560 LAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDE 619

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468
           MR+ G  P++  YN  I+  C+ G++++A N+ +EM   +++P   SF  ++  F     
Sbjct: 620 MREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPD 679

Query: 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
              A E F+  V    +   + G    + N LL A ++  A ++   ++ +G EL  + +
Sbjct: 680 FDMAQEVFETAVS---ICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLY 736

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              + SL     ++ A      M+D      P     ++ GL K+ N++ A    EK+ +
Sbjct: 737 KDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMME 796

Query: 589 MAAERQITFKM 599
           MA+  ++  K+
Sbjct: 797 MASVGEVANKV 807



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 142/629 (22%), Positives = 262/629 (41%), Gaps = 113/629 (17%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S+ ++K F   +   SR P+ +  +    V+L   + ER +       +  Y+  +    
Sbjct: 88  SNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRERRVEFV----SWLYKDMVLCGI 143

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
            P    +Y  +  LI++L       A   L +EM ++  KP   T   F IL+R +  A 
Sbjct: 144 SP---ETY-TFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFT---FGILVRGYCKAG 196

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           +  K +E+L+ M  +G  P++ V+  ++ + C+     ++ KL ++MRE    P +  F 
Sbjct: 197 LTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFN 256

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGF----EPDIVVYNNLLSGYAQMGKMTDA---FE- 299
           S +   CKEGK+++A  +   M+   +     P+ + YN +L G+ ++G + DA   FE 
Sbjct: 257 SRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316

Query: 300 -------------------------------LLKEMRRKGCDPNANSYTVLIQALCRMEK 328
                                          +LK+M  KG  P+  SY +L+  LC++  
Sbjct: 317 IRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGM 376

Query: 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT--- 385
           + +A      M+R+G   D VTY  L+ G+C   K+D    +L  M++   LPN  T   
Sbjct: 377 LSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNI 436

Query: 386 YLHIML----AHEKKE----------------------------ELEECVELMGEMRKIG 413
            LH +       E +E                            EL++ +E++  MR  G
Sbjct: 437 LLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496

Query: 414 -----------------------CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLS 450
                                  C+PD+  Y+ ++   CK G   EA  ++ EM    L 
Sbjct: 497 SAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQ 556

Query: 451 PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510
           P + ++ + +H F  QG +  A    K+M  +G   + +  T  +L+  L    ++    
Sbjct: 557 PDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLE--TYNSLILGLGIKNQIFEIH 614

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
            +   +  KG   N+  +   I  L   G V++A +   +MM  ++ P   +F  L+   
Sbjct: 615 GLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAF 674

Query: 571 KKLYNRQIAAEITEKVRKMAAERQITFKM 599
            K+ +  +A E+ E    +  +++  + +
Sbjct: 675 CKVPDFDMAQEVFETAVSICGQKEGLYSL 703


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 193/382 (50%), Gaps = 4/382 (1%)

Query: 191 KKAIEVLDEMPKY--GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           ++A+++L  M K   GC P+   +  ++  L +   V +A  LF EM ++   P +  +T
Sbjct: 207 QRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYT 266

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++   CK   + +A+ VL QM   GF+P+ V YN ++ GY+  G+  +   + +EM  +
Sbjct: 267 SIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQ 326

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +    + +LC+  K +EA   F  M   G + ++VTY+ L+ G+         
Sbjct: 327 GLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDM 386

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             + +SM   GI+ +Q  +  ++ A+ K+  ++E + +  +M++ G +PD   Y +VI  
Sbjct: 387 LNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAA 446

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             ++G L +A++ +N+M A  L P    +  ++ GF   G L++A E   EM+ RG +  
Sbjct: 447 FSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRG-IPR 505

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P      +++NSL +  +V  A D++  ++  G   +V  +   I      G +++A   
Sbjct: 506 PNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGV 565

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
              M+ A + P   ++  L+ G
Sbjct: 566 LDAMISAGIEPDVVSYNTLIDG 587



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 209/490 (42%), Gaps = 19/490 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
            PN V     Y  +I  L +  +      L  EM ++   P ++T   +  ++     AR
Sbjct: 224 SPNVV----TYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVT---YTSIIDALCKAR 276

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + KA  VL +M   G +P++  + C++     +   KE A +F EM  +   P++    
Sbjct: 277 AMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCN 336

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S +   CK GK  EA      M   G +P++V Y+ LL GYA  G   D   L   M   
Sbjct: 337 SYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGN 396

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G   +   + ++I A  +   M+E    F +M+  G   D  TY  +I+ F +  ++   
Sbjct: 397 GIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADA 456

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIR 426
            +  + MI  G+ P  + Y  ++        L +  EL+ EM   G   P++  +N +I 
Sbjct: 457 MDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIIN 516

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
             CK G + EA ++++ +      P   +F  ++ G+   G + +A      M+  G+  
Sbjct: 517 SLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGI-- 574

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
            P   +   L++   R  +++    ++  +++KG +     + I +H LF++G    A  
Sbjct: 575 EPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKK 634

Query: 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF------KMY 600
            C +M+++       T   ++ GL +      A  + +K+  M  +  I         MY
Sbjct: 635 MCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMY 694

Query: 601 KRRGERDLKE 610
           K R   + KE
Sbjct: 695 KVRKREEAKE 704



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 186/383 (48%), Gaps = 9/383 (2%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           +  KP L+T   + +L+  +A+       + + + M   G   D+ VF  ++DA  K   
Sbjct: 361 KGHKPNLVT---YSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGM 417

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           + E   +F +M+E+   P    +  ++  + + G+L +A     QM   G +P+ +VY++
Sbjct: 418 MDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHS 477

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCD-PNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           L+ G+   G +  A EL+ EM  +G   PN   +  +I +LC+  ++ EA+  F  +   
Sbjct: 478 LIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHI 537

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   DV+T+ +LI G+    KI++ + +LD+MI  GI P+ ++Y  ++  + +   +++ 
Sbjct: 538 GERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDG 597

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L GEM   G  P    Y +++      G    A  + +EM  +  +    +  +++ G
Sbjct: 598 LILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
                C  EA   FK++   G ++       +  +++++ + +K E AK+++  I   G 
Sbjct: 658 LCRNNCDDEAIAMFKKL---GAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGL 714

Query: 522 ELNVYAWTIWIHSLFSNGHVKEA 544
             N   + + I +L   G V+EA
Sbjct: 715 VPNASTYGVMIKNLLKEGSVEEA 737



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 213/499 (42%), Gaps = 21/499 (4%)

Query: 86  SRLPKLELALQHSGVVLRPGLTERVI------------NRCGDAGNLGYRYYMWASKQPN 133
           +R P +  AL   G  L+ GL   VI             R  D  NL          +P+
Sbjct: 132 TRRPTVGFAL--FGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPD 189

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
            +    V + L +     R    +  ++++     P ++T    +  + R      V KA
Sbjct: 190 TISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGE---VSKA 246

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYG 252
             +  EM + G  PD   +  ++DALCK  ++ +A  +  +M    F+P+   +  +++G
Sbjct: 247 CNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHG 306

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +   G+  E   +  +M   G  P+IV  N+ +S   + GK  +A E    M  KG  PN
Sbjct: 307 YSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPN 366

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y+VL+          +    F  ME +G  AD   +  +I  + K   +D    I  
Sbjct: 367 LVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFT 426

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M ++G++P+  TY  ++ A  +   L + ++   +M  +G  P+   Y+ +I+  C  G
Sbjct: 427 QMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHG 486

Query: 433 ELKEAVNVWNEMEAASLS-PGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
            L +A  + +EM +  +  P    F  +++    +G ++EA + F  ++  G    P   
Sbjct: 487 NLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIG--ERPDVI 544

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  +L++      K+E A  V   +++ G E +V ++   I     NG + +      +M
Sbjct: 545 TFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEM 604

Query: 552 MDADVMPQPDTFAKLMRGL 570
           +   V P   T+  ++ GL
Sbjct: 605 LSKGVKPTTITYGIILHGL 623



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 190/413 (46%), Gaps = 13/413 (3%)

Query: 94  ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQ-PNYVHSYDVYRALIKSLSKMR 152
           +++ +G+V    +   VI+  G  G +     ++   Q    +     Y  +I + S+M 
Sbjct: 392 SMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMG 451

Query: 153 KFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE-PDE 209
           +         +M     KP+ I   V+  L++ F     + KA E++ EM   G   P+ 
Sbjct: 452 RLADAMDKFNQMIAMGLKPEGI---VYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNI 508

Query: 210 FVFGCLLDALCKNSSVKEAAKLFD---EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
             F  ++++LCK   V EA  +FD    + ER  P +  F SL+ G+   GK+ +A  VL
Sbjct: 509 VFFNSIINSLCKEGRVVEAHDIFDFVIHIGER--PDVITFNSLIDGYGLVGKIEKAFGVL 566

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
             M  AG EPD+V YN L+ GY + G++ D   L  EM  KG  P   +Y +++  L   
Sbjct: 567 DAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFND 626

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
            +   A +   EM  SG   D+ T   ++ G C++   D    +   +    +  N    
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAII 686

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++ A  K  + EE  EL   +   G VP+ S Y V+I+   K G ++EA N+++ ME 
Sbjct: 687 NTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEK 746

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLN 498
           +  +P +     ++   L +G +++A  Y  ++ G+ + L A     L AL +
Sbjct: 747 SGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFS 799



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 47/290 (16%)

Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKM-------------------------------- 329
           +E R +   P   +Y +L+   CR  +                                 
Sbjct: 108 EEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHA 167

Query: 330 ----EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR--GILPNQ 383
               +  N     M   G E D ++Y T++   C+  +  R  ++L +M+++  G  PN 
Sbjct: 168 KRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNV 227

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +TY  ++    ++ E+ +   L  EM + G VPDV  Y  +I   CK   + +A  V  +
Sbjct: 228 VTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQ 287

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M +    P   ++  M+HG+   G   E    F+EM  +GL+  P   T  + ++SL + 
Sbjct: 288 MISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLM--PNIVTCNSYMSSLCKH 345

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            K + A + +  +  KG + N+  +++ +H     G+  E C   +DM++
Sbjct: 346 GKSKEAAEFFDSMAAKGHKPNLVTYSVLLH-----GYATEGCF--VDMLN 388



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM--LAHEKKEELEECVEL 405
           V TY  L+   C++R+    + +    ++ G+  + +    ++  L H K+ + +    L
Sbjct: 119 VCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSD-DVVNLL 177

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVVMVHGF 463
           +  M ++G  PD  +YN V++  C+    + A+++ + M  ++   SP   ++  ++HG 
Sbjct: 178 LHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGL 237

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             +G + +AC  F EM+ +G++  P   T  +++++L +A+ ++ A+ V   +++ G + 
Sbjct: 238 FREGEVSKACNLFHEMMQQGVV--PDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQP 295

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
           N   +   IH    +G  KE      +M    +MP   T    M  L K    + AAE  
Sbjct: 296 NKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFF 355

Query: 584 EKV 586
           + +
Sbjct: 356 DSM 358


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 215/484 (44%), Gaps = 34/484 (7%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           S+  Y  ++ + ++      V +L   M        TT  F I  R         +A+ +
Sbjct: 135 SFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTM 194

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
           L  M ++GC PD  ++  ++ ALC    V EAA L DEM        +  F  +++G C 
Sbjct: 195 LRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCT 254

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY---AQM--------------------- 291
            G+L EA  ++ +M   G  P+ + Y  LL G    +Q+                     
Sbjct: 255 LGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTV 314

Query: 292 -------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
                  GK+ +A EL + M  KGC P+A++Y++LI  LC++ ++  A +   EME  G 
Sbjct: 315 IGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGF 374

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
              +VTYT L+  FC++   D    +L+ M  +G+  N   Y  ++ A  K   +++ + 
Sbjct: 375 APSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMR 434

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
            M EM+  G  PD+  YN +I   C   +++EA  ++  +    +     ++  ++H  L
Sbjct: 435 FMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALL 494

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
             G   +A     +MV  G   +    +   L+ +L R   V+ +  + S +  KG + N
Sbjct: 495 RNGSWQDAISLANDMVLHG--CSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPN 552

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
             ++ + I  L     V++A     +M++ ++ P   T+  L+ GL K+     A  + E
Sbjct: 553 NVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLE 612

Query: 585 KVRK 588
           K+  
Sbjct: 613 KLHN 616



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 176/375 (46%), Gaps = 34/375 (9%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV------------------------ 225
           +++A  ++D M   GC P+   +G LL  LC  S V                        
Sbjct: 258 LREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGR 317

Query: 226 -------KEAAKLFDEMRERFKPSLRH-FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
                  KEAA+L++ M  +  P   H ++ L++G CK G+L  A  +L +M+D GF P 
Sbjct: 318 CLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPS 377

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           IV Y  LL  + + G   +   +L+ M  KG   N   Y  +I A+C+  +M++A R   
Sbjct: 378 IVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQ 437

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM+  G + D+ TY T+I   C + +++    + ++++  G++ N +TY  ++ A  +  
Sbjct: 438 EMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNG 497

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
             ++ + L  +M   GC  D+ +YN +I+  C+ G +  ++ + +EM    + P   S+ 
Sbjct: 498 SWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYN 557

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +++        + +A E  KEM+ + L   P   T   L+N L +   +  A ++   + 
Sbjct: 558 LLISELCKTRRVRDALELSKEMLNQEL--TPDIVTYNTLINGLCKMGWMHAALNLLEKLH 615

Query: 518 TKGCELNVYAWTIWI 532
            +    ++  + I I
Sbjct: 616 NEDVHADIITYNILI 630



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 169/366 (46%), Gaps = 13/366 (3%)

Query: 106 LTERVINRCGDAGNL---GYRYYMWASKQ-PNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L   VI RC   G L      Y    SK  P   H+Y +   LI  L K+ + G+   L+
Sbjct: 310 LFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSI---LIHGLCKLGRLGSAMKLL 366

Query: 162 EEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
            EM  +   P ++T   + IL+  F    M      +L+ M   G   +   +  ++ A+
Sbjct: 367 REMEDKGFAPSIVT---YTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAV 423

Query: 220 CKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
           CK+  + +A +   EM+ + +KP +  + +++Y  C   ++ EA+Y+   +   G   + 
Sbjct: 424 CKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANA 483

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           + YN L+    + G   DA  L  +M   GC  +  SY  LI+ALCR   ++ +     E
Sbjct: 484 ITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSE 543

Query: 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398
           M   G + + V+Y  LIS  CK+R++    E+   M+ + + P+ +TY  ++    K   
Sbjct: 544 MAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGW 603

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           +   + L+ ++       D+  YN++I   CK   L +A  + N    + ++P   ++ +
Sbjct: 604 MHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGI 663

Query: 459 MVHGFL 464
           MV  F+
Sbjct: 664 MVQNFV 669



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 177/431 (41%), Gaps = 74/431 (17%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTS 248
           ++A+ +L+ +P     P   +   LL  L ++ +   A  L D++  RF   PS R + +
Sbjct: 85  ERALFLLESLPPSRVPP---LRESLLIPLFRSLAPGRALHLLDQLPHRFAVSPSFRSYNT 141

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L  + +     +   +  +M       P    ++       ++G+  +A  +L+ M R 
Sbjct: 142 VLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARH 201

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GC P+   Y  +I ALC    + EA     EM   GC ADV T+  ++ G C   ++   
Sbjct: 202 GCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREA 261

Query: 368 YEILDSMIQRGILPNQLTYLHIM----LAHEKKE-------------------------- 397
             ++D M+ RG +PN +TY  ++    LA + +E                          
Sbjct: 262 ARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLD 321

Query: 398 -ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            +L+E  EL   M   GC PD   Y+++I   CKLG L  A+ +  EME    +P   ++
Sbjct: 322 GKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTY 381

Query: 457 VVMVHGFLGQG----------------------------CLI-------EACEYFKEMVG 481
            +++H F   G                            C +       +A  + +EM  
Sbjct: 382 TILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKS 441

Query: 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541
           +G    P   T   ++  L    ++E A+ ++  ++ +G   N   +   IH+L  NG  
Sbjct: 442 QGY--KPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSW 499

Query: 542 KEACSYCLDMM 552
           ++A S   DM+
Sbjct: 500 QDAISLANDMV 510



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 1/171 (0%)

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           + AI + ++M  +GC  D   +  L+ ALC++ +V  +  L  EM E+  KP+   +  L
Sbjct: 500 QDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLL 559

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +   CK  ++ +A  +  +M +    PDIV YN L++G  +MG M  A  LL+++  +  
Sbjct: 560 ISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDV 619

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
             +  +Y +LI   C+   + +A+        SG   +  T+  ++  F +
Sbjct: 620 HADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNFVR 670


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 206/432 (47%), Gaps = 16/432 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL-----ITTEVFVILMRRFASAR 188
           Y HS    R ++  L  +R+     +L++ + +    L         V   L+   A   
Sbjct: 81  YAHS----RRVLSRLVALRRPHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRG 136

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
           ++  A+  +  + +    P+      +L  L ++ S +   +LF+++     P++  F  
Sbjct: 137 LLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLP---APNVFTFNI 193

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++   CKEG+L EA+ +  +MK+ G  PD+V +N+L+ GY + G++ +  +L++EMRR G
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
           C  +  +Y  LI   C+  +ME A   F  M+R G  A+VVT++T +  FCK   +    
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAM 313

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           ++   M  RG+  N+ TY  ++    K   L++ + L+ EM + G   +V  Y V++   
Sbjct: 314 KLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSA 487
           CK  ++ EA +V   ME A +      +  ++HG        +A     EM  +GL L  
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
             YG   AL+  L    K++ AK + + +   G E N   +T  + + F +G V EA + 
Sbjct: 434 SLYG---ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 548 CLDMMDADVMPQ 559
              ++D+   P 
Sbjct: 491 LQKILDSGFQPN 502



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 165/363 (45%), Gaps = 21/363 (5%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI    K  +    +     M++E     ++T   FV     F    +V++A+++  
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFV---DAFCKEGLVREAMKLFA 317

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEG 257
           +M   G   +EF + CL+D  CK   + +A  L DEM  +  P ++  +T L+ G CKE 
Sbjct: 318 QMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKER 377

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ EA+ VL  M+ AG   + ++Y  L+ G+        A  LL EM+ KG + + + Y 
Sbjct: 378 KVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG 437

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LIQ LC + K++EA     +M+ SG E + + YTT++    KS K+     +L  ++  
Sbjct: 438 ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDS 497

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  PN                L E V+L  EM   G   D   Y  ++    K G L +A
Sbjct: 498 GFQPNNGC-------------LNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDA 544

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  +M  + L      +   + GF     + EA E F EM+G G+  AP       L+
Sbjct: 545 FALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGI--APDRAVYNCLI 602

Query: 498 NSL 500
             +
Sbjct: 603 TQI 605



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 176/367 (47%), Gaps = 18/367 (4%)

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
           ++++EM + GC+ D   +  L++  CK   ++ A   F  M RE    ++  F++ +  +
Sbjct: 244 QLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAF 303

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           CKEG + EA  +  QM+  G   +   Y  L+ G  + G++ DA  LL EM R+G   N 
Sbjct: 304 CKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNV 363

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +YTVL+  LC+  K+ EA      ME++G  A+ + YTTLI G   ++  ++   +L  
Sbjct: 364 VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M  +G+  +   Y  ++       +L+E   L+ +M + G  P+   Y  ++    K G+
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGT 492
           + EA+ +  ++  +   P               GCL EA + F EMV +G+ L    Y  
Sbjct: 484 VPEAIAMLQKILDSGFQP-------------NNGCLNEAVQLFNEMVHKGMSLDKVVY-- 528

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
             ALL+  L+   +  A  + + ++  G +L+++ +T +I    +   + EA     +M+
Sbjct: 529 -TALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMI 587

Query: 553 DADVMPQ 559
              + P 
Sbjct: 588 GHGIAPD 594



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 158/345 (45%), Gaps = 6/345 (1%)

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +LL      G L +A   + ++++    P+    N++L   A+      +  L++ +  +
Sbjct: 127 TLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLAR----DRSGRLVRRLFEQ 182

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN  ++ ++I  LC+  ++ EA   F  M+  GC  DVVT+ +LI G+ K  ++D  
Sbjct: 183 LPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEV 242

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++++ M + G   + +TY  ++    K   +E        M++ G + +V  ++  +  
Sbjct: 243 EQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDA 302

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK G ++EA+ ++ +M    ++    ++  ++ G    G L +A     EMV +G+   
Sbjct: 303 FCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV--P 360

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
               T   L++ L + +KV  A+DV   +   G   N   +T  IH  F N + ++A   
Sbjct: 361 LNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGL 420

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592
             +M +  +      +  L++GL  ++    A  +  K+ +   E
Sbjct: 421 LSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLE 465



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 26/248 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDE 199
           Y  L+  L K RK      ++  M  EK  +   E+ +  L+      +  +KA+ +L E
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMM--EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G E D  ++G L+  LC    + EA  L  +M E   +P+   +T+++    K GK
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 259 LVEAKYVLVQMKDAGFEP----------------------DIVVYNNLLSGYAQMGKMTD 296
           + EA  +L ++ D+GF+P                      D VVY  LL GY + G + D
Sbjct: 484 VPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHD 543

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           AF L  +M   G   +   YT  I   C +  M EA   F EM   G   D   Y  LI+
Sbjct: 544 AFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLIT 603

Query: 357 GFCKSRKI 364
              + R++
Sbjct: 604 QIPEIREL 611



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 21/200 (10%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y ALI+ L  + K     +L+ +M +   +P  I   ++  +M     +  V +AI +L
Sbjct: 435 LYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYI---IYTTMMDACFKSGKVPEAIAML 491

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--FTSLLYGWCK 255
            ++   G +P+    GCL           EA +LF+EM  +   SL    +T+LL G+ K
Sbjct: 492 QKILDSGFQPNN---GCL----------NEAVQLFNEMVHK-GMSLDKVVYTALLDGYLK 537

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
           +G L +A  +  +M D+G + D+  Y   +SG+  +  M +A E+  EM   G  P+   
Sbjct: 538 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAV 597

Query: 316 YTVLIQALCRMEKMEEANRA 335
           Y  LI  +  + ++   N++
Sbjct: 598 YNCLITQIPEIRELGGGNKS 617


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 180/376 (47%), Gaps = 40/376 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI +LS+  +F    A+   M      P L+T  V + +  + A     K+ + ++D
Sbjct: 179 YTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVP--WKEVLALVD 236

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            M K G   D + +  L+    + +  KEAAK+FDEMR                      
Sbjct: 237 SMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRA--------------------- 275

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
                        AGFEPD V  N+LL  Y +  +  +A  +LKEM + GC P+  +Y  
Sbjct: 276 -------------AGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNS 322

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI +  +   +EEA +   EME  G E DV+TYTTL+SG  ++ KID      + M++ G
Sbjct: 323 LISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNG 382

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN  TY  ++  H  + +  E + +  E+R  G VPDV  +N ++ +  + G   E  
Sbjct: 383 CKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVS 442

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            V+ EM+ +   P  D++V ++  +   G   +A E +K M+  G+   P   T  A+L+
Sbjct: 443 GVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGI--HPDISTYNAVLS 500

Query: 499 SLLRAQKVEMAKDVWS 514
           +L R  + E A+ +++
Sbjct: 501 ALARGGRWEQAEKLFA 516



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 6/310 (1%)

Query: 157 VWALMEEMRKEKPQL--ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           V AL++ MRK+   L   T    +   RR A   + K+A +V DEM   G EPD+     
Sbjct: 231 VLALVDSMRKDGIPLDRYTYNTLISCCRRRA---LYKEAAKVFDEMRAAGFEPDKVTLNS 287

Query: 215 LLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LLD   K     EA  +  EM +    PS+  + SL+  + K+G L EA  +  +M+  G
Sbjct: 288 LLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKG 347

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
            EPD++ Y  L+SG  + GK+  A     EM R GC PN  +Y  LI+      K  E  
Sbjct: 348 IEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMM 407

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
             F E+  +G   DVVT+ TL++ F ++        +   M + G +P + TY+ ++ ++
Sbjct: 408 IVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSY 467

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            +    ++ +E+   M + G  PD+S YN V+    + G  ++A  ++ EME     P  
Sbjct: 468 SRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDE 527

Query: 454 DSFVVMVHGF 463
            S+  ++H +
Sbjct: 528 LSYSSLLHAY 537



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 195/450 (43%), Gaps = 43/450 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y +LI S  K         L EEM  +  +P +IT    V  + R   A  +  AI   
Sbjct: 319 TYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDR---AGKIDAAIGTY 375

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
           +EM + GC+P+   +  L+          E   +FDE+R   F P +  + +LL  + + 
Sbjct: 376 NEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQN 435

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           G   E   V  +MK +G+ P+   Y +L+S Y++ G    A E+ K M   G  P+ ++Y
Sbjct: 436 GLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTY 495

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
             ++ AL R  + E+A + F EME      D ++Y++L+  +  ++K+D+   + + +  
Sbjct: 496 NAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYA 555

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV------------------ 418
             I  +      ++L + K   L +  +   E+R+  C  D+                  
Sbjct: 556 ERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKK 615

Query: 419 -----------------SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                            + YN ++ +  +LG+ ++  N+  E++++   P   S+  M++
Sbjct: 616 VEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIY 675

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
            +  +G + EA   F EM   GL+  P   T    + S +     E A D+   +VT GC
Sbjct: 676 AYGRKGQMKEASRLFSEMKCSGLV--PDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGC 733

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           + N   +   +    S+G + +  S+  ++
Sbjct: 734 KPNERTYNTILQEYCSHGRIADGKSFISNL 763



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 3/224 (1%)

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK-SRKIDRCY 368
           DP+A++YT LI AL R  +  +A   F  M  +G    +VTY  ++  + K +       
Sbjct: 173 DPDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVL 232

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            ++DSM + GI  ++ TY  ++    ++   +E  ++  EMR  G  PD    N ++ + 
Sbjct: 233 ALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVY 292

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K     EA+ V  EME     P   ++  ++  ++  G L EA +  +EM  +G+   P
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGI--EP 350

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              T   L++ L RA K++ A   ++ ++  GC+ N+  +   I
Sbjct: 351 DVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALI 394



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 39/332 (11%)

Query: 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
           V  + +EM+K    +   + +V L+  ++   +  +A+E+   M + G  PD   +  +L
Sbjct: 441 VSGVFKEMKKSG-YVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVL 499

Query: 217 DALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAK------------ 263
            AL +    ++A KLF EM     +P    ++SLL+ +    KL + K            
Sbjct: 500 SALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIE 559

Query: 264 --------YVLVQMKDAGFEP---------------DIVVYNNLLSGYAQMGKMTDAFEL 300
                    VLV  K                     DI V N ++S Y + G +    E+
Sbjct: 560 SHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEI 619

Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
           L  M+    + +  +Y  L+    R+   E+      E++ S    D  +Y T+I  + +
Sbjct: 620 LSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGR 679

Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
             ++     +   M   G++P+ +TY   + ++      EE ++L+  M   GC P+   
Sbjct: 680 KGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERT 739

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           YN +++  C  G + +  +  + +    L PG
Sbjct: 740 YNTILQEYCSHGRIADGKSFISNL--PELHPG 769



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 131/284 (46%), Gaps = 12/284 (4%)

Query: 112 NRCG--DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--E 167
           +RCG  D     Y+  + A   P+       Y A++ +L++  ++     L  EM     
Sbjct: 468 SRCGLFDQAMEIYKRMIEAGIHPDI----STYNAVLSALARGGRWEQAEKLFAEMENLDS 523

Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
           +P  ++   +  L+  +A+A+ + K   + +++     E    +   L+    K +++ +
Sbjct: 524 RPDELS---YSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSD 580

Query: 228 AAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
             K F E+R R     +    +++  + K G + + + +L  MK++        YN+L+ 
Sbjct: 581 TEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMH 640

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            Y+++G       +L E++     P+  SY  +I A  R  +M+EA+R F EM+ SG   
Sbjct: 641 MYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVP 700

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
           D+VTY   +  +  +   +   +++  M+  G  PN+ TY  I+
Sbjct: 701 DIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTIL 744


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/523 (25%), Positives = 243/523 (46%), Gaps = 22/523 (4%)

Query: 75  EKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG---NLGYRYYMWASKQ 131
           E+  RILK F    P  E AL+    VL+  +  R++          N+  +++ WA K+
Sbjct: 34  ERFIRILKIFKWG-PDAEKALE----VLKLKVDHRLVREVLKIDVEINVKIQFFKWAGKR 88

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
            N+ H    Y  LI+ L     FG +W +++EM +    +I       +++    A+MV 
Sbjct: 89  RNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVN 148

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PSLRHFTSL 249
           KA+ V  ++    C+P    +  ++  L +    ++  +L+ EM       P    ++ L
Sbjct: 149 KALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVL 208

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + K G+   A  +  +MK  G  P   +Y  LL+ Y + G    A  L++EM+ KGC
Sbjct: 209 VSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLVQEMKDKGC 267

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P   +YT LI+ L +  ++E+A   F+ M + GC+ DVV    LI+ F K+ +++   +
Sbjct: 268 APTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALK 327

Query: 370 ILDSMIQRGILPNQLTYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           + D M      PN +TY  ++ A  E K    E      +M+  G  P    Y+++I   
Sbjct: 328 LFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGF 387

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC-EYF---KEMVGRGL 484
           CK   +++A+ +  EM+     P   ++  +++  LG+    EA  E F   KE  GR  
Sbjct: 388 CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA-LGKAKRYEAANELFLELKENCGRS- 445

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            SA  Y     ++ +L +  +   A D+++ +   GC  +VYA+   +  L   G ++EA
Sbjct: 446 -SARIYAV---MIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEA 501

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
            S    M +    P  ++   ++ GL +    + A E+  K++
Sbjct: 502 FSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMK 544



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 14/304 (4%)

Query: 106 LTERVINRCGDAGNLGYRYYMWASKQ-----PNYVHSYDVYRALIKSLSKMRKFGAVWAL 160
           L   +IN  G AG L     ++   +     PN V    V +AL +S +   +  A W  
Sbjct: 308 LINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASE-AASW-- 364

Query: 161 MEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
                K K   +T   F   IL+  F     V+KA+ +L+EM + G  P    +  L++A
Sbjct: 365 ---FEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 421

Query: 219 LCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
           L K    + A +LF E++E   + S R +  ++    K G+  EA  +  +MK  G  PD
Sbjct: 422 LGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPD 481

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +  YN L+SG  + G + +AF  L+ M   GC P+ NS+ +++  L R  + E+A   F+
Sbjct: 482 VYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFM 541

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           +M+ S  + D V+Y T++    +S   +   +++  M  RG   + +TY  I+ A  K +
Sbjct: 542 KMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVD 601

Query: 398 ELEE 401
           E +E
Sbjct: 602 EDDE 605



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 138/296 (46%), Gaps = 5/296 (1%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
           LI    K  +      L ++MR  K  P ++T    +  +  F S     +A    ++M 
Sbjct: 312 LINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKAL--FESKAPASEAASWFEKMK 369

Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
             G  P  F +  L+D  CK + V++A  L +EM E+ F P    + SL+    K  +  
Sbjct: 370 ANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 429

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
            A  + +++K+        +Y  ++    + G+ ++A +L  EM++ GC+P+  +Y  L+
Sbjct: 430 AANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALM 489

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             L R   +EEA  A   ME +GC  D+ ++  +++G  ++ + ++  E+   M    I 
Sbjct: 490 SGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIK 549

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
           P+ ++Y  I+ +  +    EE  +LM EM   G   D   Y+ ++    K+ E  E
Sbjct: 550 PDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 103/194 (53%), Gaps = 2/194 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI +L K +++ A   L  E+ KE     +  ++ ++++         +A+++ +EM
Sbjct: 415 YCSLINALGKAKRYEAANELFLEL-KENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEM 473

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEGKL 259
            K GC PD + +  L+  L +   ++EA      M E    P L     +L G  + G+ 
Sbjct: 474 KKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRP 533

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  + ++MKD+  +PD V YN +L   ++ G   +A +L++EM  +G + +  +Y+ +
Sbjct: 534 EQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSI 593

Query: 320 IQALCRMEKMEEAN 333
           ++A+ ++++ +E N
Sbjct: 594 LEAVGKVDEDDEPN 607


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 226/475 (47%), Gaps = 16/475 (3%)

Query: 101 VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWAL 160
           VLR GL++  ++   DA  L   + + A  +P    S   +  L+ +++KM KF  V + 
Sbjct: 49  VLRTGLSDIELD---DAIGL---FGVMAQSRP--FPSIIEFSKLLSAIAKMNKFDLVISF 100

Query: 161 MEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
            E+M        L T   + IL+  F     +  A+ +L +M K G EPD      LL+ 
Sbjct: 101 GEKMEILGISHNLYT---YNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNG 157

Query: 219 LCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
            C  + + +A  L D+M E  +KP    FT+L++G     K  EA  ++ +M   G +PD
Sbjct: 158 FCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPD 217

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V Y  +++G  + G    A  LL +M     + N   Y+ +I +LC+    ++A   F 
Sbjct: 218 LVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFT 277

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EME  G   +V+TY++LIS  C   +      +L  MI+R I PN +T+  ++ A  KK 
Sbjct: 278 EMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKG 337

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +L +  +L  EM K    P++  Y+ +I   C L  L EA  +   M      P   ++ 
Sbjct: 338 KLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYN 397

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
            +++GF     + +  E F+EM  RGL+      T   L++   +A+  + A+ V+  +V
Sbjct: 398 TLINGFCKAKRVDKGMELFREMSQRGLVGNTV--TYTTLIHGFFQARDCDNAQMVFKQMV 455

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           + G   N+  + I +  L  NG + +A      +  + + P   T+  ++ G+ K
Sbjct: 456 SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 175/330 (53%), Gaps = 6/330 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LI  L    K     AL++ M  R  +P L+T    V  + +     +   A+ +L+
Sbjct: 186 FTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL---ALNLLN 242

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M     E +  ++  ++D+LCK     +A  LF EM  +  +P++  ++SL+   C  G
Sbjct: 243 KMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYG 302

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  +A  +L  M +    P++V ++ L+  + + GK+  A +L +EM ++  DPN  +Y+
Sbjct: 303 RWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYS 362

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C ++++ EA +    M R  C  +VVTY TLI+GFCK++++D+  E+   M QR
Sbjct: 363 SLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQR 422

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G++ N +TY  ++    +  + +    +  +M  +G  P++  YN+++   CK G+L +A
Sbjct: 423 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA 482

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           + V+  ++ +++ P   ++ +M+ G    G
Sbjct: 483 MVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 155/306 (50%), Gaps = 6/306 (1%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QP+ V     Y A++  L K         L+ +M   K +     ++  ++      R  
Sbjct: 215 QPDLV----TYGAVVNGLCKRGDTDLALNLLNKMEAAKIE-ANVVIYSTVIDSLCKYRHE 269

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+ +  EM   G  P+   +  L+  LC      +A++L  +M ER   P+L  F++L
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSAL 329

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           +  + K+GKLV+A+ +  +M     +P+I  Y++L++G+  + ++ +A ++L+ M RK C
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            PN  +Y  LI   C+ +++++    F EM + G   + VTYTTLI GF ++R  D    
Sbjct: 390 LPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   M+  G+ PN LTY  ++    K  +L + + +   +++    PD+  YN++I   C
Sbjct: 450 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 509

Query: 430 KLGELK 435
           K G+ K
Sbjct: 510 KAGKWK 515



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 199/439 (45%), Gaps = 9/439 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
           SYD    L   LS +    A+  L   M + +P     E F  L+   A        I  
Sbjct: 43  SYDYREVLRTGLSDIELDDAI-GLFGVMAQSRPFPSIIE-FSKLLSAIAKMNKFDLVISF 100

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCK 255
            ++M   G   + + +  L++  C+ S +  A  L  +M +  ++P +    SLL G+C 
Sbjct: 101 GEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCH 160

Query: 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315
             ++ +A  ++ QM + G++PD V +  L+ G     K ++A  L+  M ++GC P+  +
Sbjct: 161 GNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220

Query: 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375
           Y  ++  LC+    + A     +ME +  EA+VV Y+T+I   CK R  D    +   M 
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280

Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEM--RKIGCVPDVSNYNVVIRLACKLGE 433
            +G+ PN +TY  ++          +   L+ +M  RKI   P++  ++ +I    K G+
Sbjct: 281 NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKIN--PNLVTFSALIDAFVKKGK 338

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           L +A  ++ EM   S+ P   ++  +++GF     L EA +  + M+ +  L  P   T 
Sbjct: 339 LVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL--PNVVTY 396

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+N   +A++V+   +++  +  +G   N   +T  IH  F       A      M+ 
Sbjct: 397 NTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 456

Query: 554 ADVMPQPDTFAKLMRGLKK 572
             V P   T+  L+ GL K
Sbjct: 457 VGVHPNILTYNILLDGLCK 475



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 10/210 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
            PN V     + ALI +  K  K      L EEM  R   P + T   +  L+  F    
Sbjct: 320 NPNLV----TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFT---YSSLINGFCMLD 372

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
            + +A ++L+ M +  C P+   +  L++  CK   V +  +LF EM +R    +   +T
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYT 432

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +L++G+ +      A+ V  QM   G  P+I+ YN LL G  + GK+  A  + + ++R 
Sbjct: 433 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 492

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFV 337
             +P+  +Y ++I+ +C+  K +     FV
Sbjct: 493 TMEPDIYTYNIMIEGMCKAGKWKMGGIYFV 522


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 193/398 (48%), Gaps = 2/398 (0%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T   + IL+  +  AR     + V   + + G  PD F +  L+D   K   V +A  LF
Sbjct: 188 TIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLF 247

Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
            +M E+   P++  ++SL+ G CK  ++ +A+ VL QM  AG  P+ + YN L+ GY+  
Sbjct: 248 YKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTS 307

Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
           G   ++  + KEM      P+  +    + ALC+  +++EA   F  M   G + DV++Y
Sbjct: 308 GMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISY 367

Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
             L+ G+  +  I     + + M+  G++P++  +  ++ A+ +   +++ + +  +M K
Sbjct: 368 GALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTK 427

Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            G  PD+  ++ VI   C+LG L +A+  +N M    + P T  +  ++ G   +  L++
Sbjct: 428 QGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVK 487

Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
           A E   +M+ +G +  P      +++N+L +  +V   KDV   I+  G   N+  +   
Sbjct: 488 AKELISDMLSKG-IPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSL 546

Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +      G++KEA      M    V P   T+  L+ G
Sbjct: 547 VDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 584



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 209/467 (44%), Gaps = 10/467 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI   SK  +      L  +M ++   P ++T   +  L+      + + KA  VL 
Sbjct: 227 YNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVT---YSSLINGLCKTKEMDKAERVLR 283

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M   G  P+   + CL+     +   KE+ ++F EM      P + +  S +   CK G
Sbjct: 284 QMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHG 343

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+ +   M   G +PD++ Y  LL GYA  G +     L   M  +G  P+ + + 
Sbjct: 344 RIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFN 403

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI A  R+  M+++   F +M + G   D++T++T+IS FC+  ++D   E  + MI  
Sbjct: 404 TLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDT 463

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-VSNYNVVIRLACKLGELKE 436
           G+ P+   Y  ++     + +L +  EL+ +M   G  P  +  +  +I   CK G + E
Sbjct: 464 GVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAE 523

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
             +V + +      P   +F  +V G+   G + EA      M   G+   P   T   L
Sbjct: 524 GKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV--EPDIYTYNTL 581

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++   +  +++ A  ++  ++ K   L   ++ I +H LF       A     +M+++ +
Sbjct: 582 VDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 641

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI-TFKMYKR 602
                T+A ++ GL +      A  + EK+  M  +  I TF +  R
Sbjct: 642 AVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIR 688



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 175/397 (44%), Gaps = 44/397 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           V+  LI + +++        + E+M K+   P +IT   F  ++  F     +  A+E  
Sbjct: 401 VFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT---FSTVISAFCRLGRLDDAMEKF 457

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCK 255
           + M   G  PD  V+ CL+   C    + +A +L  +M  +    P ++ FTS++   CK
Sbjct: 458 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCK 517

Query: 256 EGKLVEAK------------------------YVLV-----------QMKDAGFEPDIVV 280
           EG++ E K                        Y LV            M+  G EPDI  
Sbjct: 518 EGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYT 577

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN L+ GY + G++ DA  L ++M  K     + SY +++  L +  +   A   F EM 
Sbjct: 578 YNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMI 637

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            SG    + TY T++ G C++   D    +L+ +    +  + LT+  ++ A  K    +
Sbjct: 638 ESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQ 697

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  EL   +   G VP +  Y V+I    K    ++A N+++ ME +S +P +     ++
Sbjct: 698 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 757

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              L +G + +A  Y  ++  +G+L  P+  T   L+
Sbjct: 758 RMLLNKGEVAKAGNYLSKIDKKGIL--PEATTTSLLI 792



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 2/294 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P I  YN L++ Y +  +      +   + R G  P+  SY  LI    +  ++++A+  
Sbjct: 187 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 246

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           F +ME  G   +VVTY++LI+G CK++++D+   +L  M+  G+ PN +TY  ++  +  
Sbjct: 247 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 306

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
               +E V +  EM     VPDV N N  +   CK G +KEA ++++ M      P   S
Sbjct: 307 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVIS 366

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++HG+   GC+      F  MV  G++  P       L+N+  R   ++ +  ++  
Sbjct: 367 YGALLHGYATAGCIAGMDNLFNVMVCEGVV--PDRHVFNTLINAYARLGMMDKSLLMFED 424

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  +G   ++  ++  I +    G + +A      M+D  V P    ++ L++G
Sbjct: 425 MTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQG 478



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 143/329 (43%), Gaps = 1/329 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY  LI+     R       L+ +M  +       + F  ++        V +  +V+D 
Sbjct: 471 VYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDL 530

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
           +   G  P+   F  L+D  C   ++KEA  L D M     +P +  + +L+ G+CK G+
Sbjct: 531 IIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGR 590

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  +   M         V YN +L G  Q  +   A E+  EM   G   + ++Y  
Sbjct: 591 IDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 650

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++  LCR    +EAN    ++     + D++T+  +I    K  +     E+  ++   G
Sbjct: 651 VLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYG 710

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++P  LTY  ++    K+E  E+   L   M K  C PD    N +IR+    GE+ +A 
Sbjct: 711 LVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAG 770

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           N  ++++   + P   +  ++++ F   G
Sbjct: 771 NYLSKIDKKGILPEATTTSLLIYLFSVNG 799



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 130/278 (46%), Gaps = 4/278 (1%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           ++P LIT   F  L+  +     +K+A+ +LD M   G EPD + +  L+D  CK+  + 
Sbjct: 536 QRPNLIT---FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRID 592

Query: 227 EAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A  LF D + +R   +   +  +L+G  +  + + AK +  +M ++G    I  Y  +L
Sbjct: 593 DALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVL 652

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  +     +A  LL+++       +  ++ ++I+A+ ++ + +EA   F  +   G  
Sbjct: 653 GGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLV 712

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             ++TY  +I+   K    +    +  SM +    P+      I+     K E+ +    
Sbjct: 713 PTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNY 772

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           + ++ K G +P+ +  +++I L    G+ +E + +  E
Sbjct: 773 LSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPE 810


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 194/402 (48%), Gaps = 5/402 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P + T  + +   RR   AR     + V   + + G  PD F +  L+D   K   V +A
Sbjct: 116 PTIYTYNILINCYRR---ARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKA 172

Query: 229 AKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
             LF +M E+   P++  ++SL+ G CK  ++ +A+ VL QM  AG  P+ + YN L+ G
Sbjct: 173 HDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHG 232

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           Y+  G   ++  + KEM      P+  +    + ALC+  +++EA   F  M   G + D
Sbjct: 233 YSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD 292

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V++Y  L+ G+  +  I     + + M+  G++P++  +  ++ A+ +   +++ + +  
Sbjct: 293 VISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFE 352

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +M K G  PD+  ++ VI   C+LG L +A+  +N M    + P T  +  ++ G   + 
Sbjct: 353 DMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRR 412

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            L++A E   +M+ +G +  P      +++N+L +  +V   KDV   I+  G   N+  
Sbjct: 413 DLVKAKELISDMLSKG-IPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLIT 471

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +   +      G++KEA      M    V P   T+  L+ G
Sbjct: 472 FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 513



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 209/467 (44%), Gaps = 10/467 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI   SK  +      L  +M ++   P ++T   +  L+      + + KA  VL 
Sbjct: 156 YNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVT---YSSLINGLCKTKEMDKAERVLR 212

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYGWCKEG 257
           +M   G  P+   + CL+     +   KE+ ++F EM      P + +  S +   CK G
Sbjct: 213 QMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHG 272

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           ++ EA+ +   M   G +PD++ Y  LL GYA  G +     L   M  +G  P+ + + 
Sbjct: 273 RIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFN 332

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI A  R+  M+++   F +M + G   D++T++T+IS FC+  ++D   E  + MI  
Sbjct: 333 TLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDT 392

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-VSNYNVVIRLACKLGELKE 436
           G+ P+   Y  ++     + +L +  EL+ +M   G  P  +  +  +I   CK G + E
Sbjct: 393 GVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAE 452

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
             +V + +      P   +F  +V G+   G + EA      M   G+   P   T   L
Sbjct: 453 GKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV--EPDIYTYNTL 510

Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
           ++   +  +++ A  ++  ++ K   L   ++ I +H LF       A     +M+++ +
Sbjct: 511 VDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 570

Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI-TFKMYKR 602
                T+A ++ GL +      A  + EK+  M  +  I TF +  R
Sbjct: 571 AVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIR 617



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 175/397 (44%), Gaps = 44/397 (11%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           V+  LI + +++        + E+M K+   P +IT   F  ++  F     +  A+E  
Sbjct: 330 VFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT---FSTVISAFCRLGRLDDAMEKF 386

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCK 255
           + M   G  PD  V+ CL+   C    + +A +L  +M  +    P ++ FTS++   CK
Sbjct: 387 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCK 446

Query: 256 EGKLVEAK------------------------YVLV-----------QMKDAGFEPDIVV 280
           EG++ E K                        Y LV            M+  G EPDI  
Sbjct: 447 EGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYT 506

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN L+ GY + G++ DA  L ++M  K     + SY +++  L +  +   A   F EM 
Sbjct: 507 YNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMI 566

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
            SG    + TY T++ G C++   D    +L+ +    +  + LT+  ++ A  K    +
Sbjct: 567 ESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQ 626

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  EL   +   G VP +  Y V+I    K    ++A N+++ ME +S +P +     ++
Sbjct: 627 EAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEII 686

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
              L +G + +A  Y  ++  +G+L  P+  T   L+
Sbjct: 687 RMLLNKGEVAKAGNYLSKIDKKGIL--PEATTTSLLI 721



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 143/329 (43%), Gaps = 1/329 (0%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY  LI+     R       L+ +M  +       + F  ++        V +  +V+D 
Sbjct: 400 VYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDL 459

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK 258
           +   G  P+   F  L+D  C   ++KEA  L D M     +P +  + +L+ G+CK G+
Sbjct: 460 IIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGR 519

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  +   M         V YN +L G  Q  +   A E+  EM   G   + ++Y  
Sbjct: 520 IDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 579

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++  LCR    +EAN    ++     + D++T+  +I    K  +     E+  ++   G
Sbjct: 580 VLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYG 639

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           ++P  LTY  ++    K+E  E+   L   M K  C PD    N +IR+    GE+ +A 
Sbjct: 640 LVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAG 699

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           N  ++++   + P   +  ++++ F   G
Sbjct: 700 NYLSKIDKKGILPEATTTSLLIYLFSVNG 728



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 130/278 (46%), Gaps = 4/278 (1%)

Query: 167 EKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
           ++P LIT   F  L+  +     +K+A+ +LD M   G EPD + +  L+D  CK+  + 
Sbjct: 465 QRPNLIT---FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRID 521

Query: 227 EAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
           +A  LF D + +R   +   +  +L+G  +  + + AK +  +M ++G    I  Y  +L
Sbjct: 522 DALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVL 581

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  +     +A  LL+++       +  ++ ++I+A+ ++ + +EA   F  +   G  
Sbjct: 582 GGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLV 641

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             ++TY  +I+   K    +    +  SM +    P+      I+     K E+ +    
Sbjct: 642 PTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNY 701

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           + ++ K G +P+ +  +++I L    G+ +E + +  E
Sbjct: 702 LSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPE 739


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 197/407 (48%), Gaps = 12/407 (2%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           + ILM+ F  A   ++A+E+LDEM   G  P+  +   ++  LC    V +A   F  + 
Sbjct: 33  YGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIG 92

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           E   P++  +++L+   CK G+  EA  ++ +M   G  P++V YN L+ G+ ++ ++ +
Sbjct: 93  EDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDE 152

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
              LLKEM ++GC  +  +YT+++   C+   ++EA R    +E+     +VVTY +L +
Sbjct: 153 VLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKR----NVVTYNSLFT 208

Query: 357 GFCKSRKIDRCYE---ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
               +   DR  E   +L+ MIQ G  PNQ+ Y  ++L   K   L+E  +++  M   G
Sbjct: 209 ALSTAEG-DRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQG 267

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
           C  D  +Y +++      G   +++ +   M  +     T +  V++H F   G L EA 
Sbjct: 268 CKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAH 327

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           + FK M  RG  S P   T   L+ +  +AQ+ + A  +   ++    + NV  +   I 
Sbjct: 328 QLFKSMYQRG--SIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIK 385

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFA--KLMRGLKKLYNRQI 578
           S       +EA      M+D    P   ++   KL +    +Y++++
Sbjct: 386 SFCREQREEEARGIFQMMVDNGCFPDRVSYTTLKLSKNEAAIYDQKV 432



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 144/320 (45%), Gaps = 39/320 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+ +L K  +    + L+ EM K+   P ++T   +  L+  F     + + + +L 
Sbjct: 102 YSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVT---YNALIDGFRKLERLDEVLMLLK 158

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-------------------- 238
           EM + GC  D   +  +LD  CKN+S+ EA +L + + +R                    
Sbjct: 159 EMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRT 218

Query: 239 --------------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
                          +P+  ++ ++L   CK  +L EA  VL+ M   G + D V Y  L
Sbjct: 219 TEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKIL 278

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +  +A  G+  D+ ELL  M   G   +  +  V+I   C+   + EA++ F  M + G 
Sbjct: 279 VVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGS 338

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
               VTY TLI  FCK+++ D   ++L  MIQ    PN +TY  I+ +  +++  EE   
Sbjct: 339 IPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARG 398

Query: 405 LMGEMRKIGCVPDVSNYNVV 424
           +   M   GC PD  +Y  +
Sbjct: 399 IFQMMVDNGCFPDRVSYTTL 418



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 131/269 (48%), Gaps = 11/269 (4%)

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338
           V Y  L+ G+ + G+   A ELL EM+  G  PN   +T +I+ LC   K+ +   A + 
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQ---ALLH 87

Query: 339 MERSG--CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             R G  C  +V TY+TL+   CKS +    Y ++  M+++G  PN +TY  ++    K 
Sbjct: 88  FRRIGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKL 147

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
           E L+E + L+ EM + GC  DV  Y +++ + CK   + EA  + N +E  ++      F
Sbjct: 148 ERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLF 207

Query: 457 VVMVHGFLGQGC-LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
             +      +G    EA    ++M+  G  + P     + +L  L +  +++ A  V   
Sbjct: 208 TALS---TAEGDRTTEALSLLEKMIQEG--TRPNQVNYRTVLLMLCKNSRLDEAYQVLLS 262

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + ++GC+ +  ++ I + +  + G   ++
Sbjct: 263 MYSQGCKTDDVSYKILVVAFANAGRTYDS 291


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 205/437 (46%), Gaps = 24/437 (5%)

Query: 88  LPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKS 147
           L K++ +   + VV+   + +R+   C D  ++  +       +     +   Y  +I  
Sbjct: 68  LRKMDESQIKANVVIYSAIVDRL---CKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDG 124

Query: 148 LSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC 205
                K+     L+ +M  R   P ++T   F  L+  F     V  A E+  EM +   
Sbjct: 125 YCSYGKWSDAEQLLRDMIERNIDPDVVT---FSALINAFVKEGKVSGAEELYREMLRRNI 181

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL-----------YGW 253
            P    +  ++D  CK+S +++A  +FD M  +   P +    +L+           +G+
Sbjct: 182 FPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGF 241

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C+ G +  A+ +  +M   G  PDIV  N LL+G  + GK+  A E+ K  ++   D + 
Sbjct: 242 CQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDT 301

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +  ++I  +C+  K++EA   F  +  +G E DVVTY  LI  F K     R  +I   
Sbjct: 302 ATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLE 361

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+ +GI+P+ +TY  ++    K+  LEE  +++  M   GC PDV  ++ +I+  CK G 
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGR 421

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           + + + +++EM    L   T ++  ++HGF   G L  A + F+EMV  G+   P   T 
Sbjct: 422 VDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGV--CPDTITF 479

Query: 494 KALLNSLLRAQKVEMAK 510
           +++L  L    K E+ K
Sbjct: 480 RSMLAGL--CTKAELQK 494



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/470 (22%), Positives = 215/470 (45%), Gaps = 50/470 (10%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL-------------------- 216
           F  LM        V +A+ ++D M + G +PD   +G ++                    
Sbjct: 13  FTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMD 72

Query: 217 ---------------DALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLV 260
                          D LCK+ +  +A  +F EM E+   P++  +  ++ G+C  GK  
Sbjct: 73  ESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWS 132

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           +A+ +L  M +   +PD+V ++ L++ + + GK++ A EL +EM R+   P   +Y+ +I
Sbjct: 133 DAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMI 192

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS-----------GFCKSRKIDRCYE 369
              C+  ++E+A   F  M   GC  D++T  TLI            GFC+   ++   +
Sbjct: 193 DGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQD 252

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           +   MI  G+ P+ +T   ++    +  +LE+ +E+    +K     D +  N++I   C
Sbjct: 253 LFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMC 312

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K  ++ EA +++N +    +     ++ +++  F+ +G  + A + + EM+ +G++  P 
Sbjct: 313 KGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGII--PS 370

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T  ++++   +  ++E A+ +   +V++GC  +V  ++  I      G V +      
Sbjct: 371 TVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFS 430

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFK 598
           +M    ++    T+  L+ G  K+ +   A +I E+ V        ITF+
Sbjct: 431 EMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFR 480



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 190/425 (44%), Gaps = 19/425 (4%)

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M + GC  +   F  L++ LC+   V +A  L D M  E  +P    + +++ G CK G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
            V A  +L +M ++  + ++V+Y+ ++    + G    A  +  EM  KG  PN  +Y  
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           +I   C   K  +A +   +M     + DVVT++ LI+ F K  K+    E+   M++R 
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK-------- 430
           I P  +TY  ++    K   LE+   +   M   GC PD+   N +I   C+        
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHG 240

Query: 431 ---LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
              +G +  A +++ EM +  +SP   +   ++ G    G L +A E FK  V +     
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFK--VFQKSKMD 298

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
               T   ++N + +  KV+ A D+++ +   G E +V  + I I      G+   A   
Sbjct: 299 LDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDI 358

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITF----KMYKR 602
            L+M+   ++P   T+  ++ G  K    + A ++ +  V +  +   +TF    K Y +
Sbjct: 359 YLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCK 418

Query: 603 RGERD 607
            G  D
Sbjct: 419 AGRVD 423



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 149/319 (46%), Gaps = 13/319 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVI--------LMRRFASARMV 190
           Y ++I    K  +      + + M  +   P +IT    +         L+  F     V
Sbjct: 188 YSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNV 247

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS-- 248
             A ++  EM   G  PD      LL  LC+N  +++A ++F ++ ++ K  L   T   
Sbjct: 248 NVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMF-KVFQKSKMDLDTATCNI 306

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++ G CK  K+ EA  +   +   G E D+V YN L+  + + G    A ++  EM  KG
Sbjct: 307 IINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKG 366

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  +Y  ++   C+  ++EEA +    M   GC  DVVT++TLI G+CK+ ++D   
Sbjct: 367 IIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGL 426

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
           E+   M QRG++ + +TY  ++    K  +L    ++  EM   G  PD   +  ++   
Sbjct: 427 ELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGL 486

Query: 429 CKLGELKEAVNVWNEMEAA 447
           C   EL++ + +  +++ +
Sbjct: 487 CTKAELQKGLTMLEDLQKS 505


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 198/400 (49%), Gaps = 5/400 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           + IL++         +A ++L  M + G  C PD   +  ++D   K   V +A  LF E
Sbjct: 189 YSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKE 248

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M +R   P L  ++S+++  CK   + +A+  L QM + G  PD   YNNL+ GY+  G+
Sbjct: 249 MVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQ 308

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
             +A  + KEMRR    P+  +  +L+ +LC+  K++EA   F  M   G   DV +Y  
Sbjct: 309 WKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKI 368

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           +++G+     +    ++ D M+  GI P+  T+  ++ A+     L++ + +  EMR  G
Sbjct: 369 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHG 428

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PDV  Y  VI   C++G++ +A+  +N+M    ++P   ++  ++ GF   G L++A 
Sbjct: 429 VKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 488

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533
           E   E++  G+     +    +++N+L +  ++  A++++   V  G   +   +++ + 
Sbjct: 489 ELILEIMNNGMRLDIVF--FSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMD 546

Query: 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
                G +++A      M+ A + P    +  L+ G  K+
Sbjct: 547 GYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKI 586



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 184/407 (45%), Gaps = 8/407 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI   S   ++     + +EMR+    P ++T     +LM        +K+A +V D
Sbjct: 296 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLN---MLMGSLCKYGKIKEARDVFD 352

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            M   G  PD F +  +L+       + +   LFD M  +   P +  F+ L+  +   G
Sbjct: 353 TMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCG 412

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            L +A  +  +M+D G +PD+V Y  +++   ++GKM DA E   +M  +G  P+  +Y 
Sbjct: 413 MLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 472

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LIQ  C    + +A    +E+  +G   D+V ++++I+  CK  +I     I D  +  
Sbjct: 473 CLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNV 532

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G  P+ + Y  +M  +    ++E+ + +   M   G  P+V  Y  ++   CK+G + E 
Sbjct: 533 GQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEG 592

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           ++++ EM    + P T  + +++ G    G  + A   F EM   G+  A    T   +L
Sbjct: 593 LSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGI--AINKCTYNIVL 650

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
               + +  + A  ++  +     ++++      I  +F    V+EA
Sbjct: 651 RGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 697



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 166/345 (48%), Gaps = 38/345 (11%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F +L++ +A+  M+ KA+ + +EM  +G +PD   +  ++ ALC+   + +A + F++M 
Sbjct: 401 FSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI 460

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           ++   P    +  L+ G+C  G L++AK +++++ + G   DIV ++++++   ++G++ 
Sbjct: 461 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIM 520

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           DA  +       G  P+A  Y++L+   C + KME+A R F  M  +G E +VV Y TL+
Sbjct: 521 DAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLV 580

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
           +G+CK  +ID    +   M+Q+GI P+ + Y  I+                 EM + G  
Sbjct: 581 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIA 640

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
            +   YN+V+R                                   GF    C  EA   
Sbjct: 641 INKCTYNIVLR-----------------------------------GFFKNRCFDEAIFL 665

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           FKE+  R +       TL  ++  + + ++VE AKD+++ I   G
Sbjct: 666 FKEL--RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSG 708



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 164/341 (48%), Gaps = 40/341 (11%)

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE-LLKEMRRKGCDPNANSYTVLIQALCRM 326
           Q+   G   DI++ N+LL G+ +  +  +A + LL      GC P+  SY++L+++LC  
Sbjct: 140 QLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 199

Query: 327 EKMEEA----------------------------------NRA---FVEMERSGCEADVV 349
            K  +A                                  N+A   F EM + G   D+V
Sbjct: 200 GKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLV 259

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY++++   CK+R + +    L  M+ +G+LP+  TY +++  +    + +E V +  EM
Sbjct: 260 TYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 319

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           R+   +PDV   N+++   CK G++KEA +V++ M     +P   S+ +M++G+  +GCL
Sbjct: 320 RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCL 379

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
           ++  + F  M+G G+  AP   T   L+ +      ++ A  +++ +   G + +V  +T
Sbjct: 380 VDMTDLFDLMLGDGI--APDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYT 437

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             I +L   G + +A      M+D  V P    +  L++G 
Sbjct: 438 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 478



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 135/314 (42%), Gaps = 41/314 (13%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           +  LIK+ +          +  EMR    KP ++T    +  + R      +  A+E  +
Sbjct: 401 FSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGK---MDDAMEKFN 457

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           +M   G  PD++ + CL+   C + S+ +A +L  E M    +  +  F+S++   CK G
Sbjct: 458 QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLG 517

Query: 258 KLVEAK------------------------YVLV-----------QMKDAGFEPDIVVYN 282
           ++++A+                        Y LV            M  AG EP++VVY 
Sbjct: 518 RIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYG 577

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            L++GY ++G++ +   L +EM +KG  P+   Y ++I  L    +   A   F EM  S
Sbjct: 578 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTES 637

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
           G   +  TY  ++ GF K+R  D    +   +    +  + +T   ++    +   +EE 
Sbjct: 638 GIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 697

Query: 403 VELMGEMRKIGCVP 416
            +L   + + G VP
Sbjct: 698 KDLFASISRSGLVP 711



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 135/304 (44%), Gaps = 54/304 (17%)

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           P +++Y +L+    R  + E A   F ++ R+G   D++    L+ GFC++++ D   E 
Sbjct: 113 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTD---EA 169

Query: 371 LDSMIQR----GILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           LD ++ R    G +P+  +Y   L  +    K  + ++ + +M E   + C PDV  Y  
Sbjct: 170 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYTT 228

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           VI    K G++ +A +++ EM    + P   ++  +VH       + +A  + ++MV +G
Sbjct: 229 VIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKG 288

Query: 484 LLS---------------------------------APQYGTLKALLNSLLRAQKVEMAK 510
           +L                                   P   TL  L+ SL +  K++ A+
Sbjct: 289 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEAR 348

Query: 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC----SYCLDMMDAD-VMPQPDTFAK 565
           DV+  +  KG   +V+++ I +     NG+  + C    +   D+M  D + P   TF+ 
Sbjct: 349 DVFDTMAMKGQNPDVFSYKIML-----NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSV 403

Query: 566 LMRG 569
           L++ 
Sbjct: 404 LIKA 407


>gi|357146655|ref|XP_003574066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Brachypodium distachyon]
          Length = 795

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 217/462 (46%), Gaps = 9/462 (1%)

Query: 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186
           +   +  Y HS      +I  L K  K G   + ++E RK +        F +LM    +
Sbjct: 196 YGISKSEYSHS-----IIIDGLCKQDKVGEALSFLQEARKGERFKPLGMSFNVLMSALCN 250

Query: 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
              ++ A   L  M KYG  PD + +  L+  LCK   + EA  LF+ + E   K     
Sbjct: 251 WGFIQPAKSFLCLMLKYGLNPDRYTYSTLIHGLCKIGFLDEAVDLFERVTEEGMKLETVT 310

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           + SL+ G+   G   E   ++  M+  G EPDIV Y  L++G+ + G + +  ++  ++ 
Sbjct: 311 YNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILIAGHCESGDVEEGMKIRNDIL 370

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G   N  +Y+VL+ AL +   + EA     E+   G + D++ Y+ LI G+CK  +I+
Sbjct: 371 DQGLQLNIVTYSVLLNALFKKGLVHEAENLLGEIHSIGLDMDIIAYSILIHGYCKLGEIE 430

Query: 366 RCYEILDSM-IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424
           R  E+ D M   + ++P  L +L I++   KK  L E    +  +       DV  YNVV
Sbjct: 431 RALEVCDVMCCSQKVVPTSLNHLSILVGLCKKGLLVEARWYLENVAVKYQPGDVVLYNVV 490

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I    K+G++  AV +++++  A + P   +   +++G+   G L  A  YF+ +    L
Sbjct: 491 IDGYAKIGDISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAESYFRAIQISSL 550

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           L  P   T   L+++L  A KV     +   +V KG + N   +++ I  L       +A
Sbjct: 551 L--PTMVTYTTLMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLCKELRFHDA 608

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
             +  +M    V   P T+  L++G  ++ + Q+A  I +++
Sbjct: 609 IHFLDNMHGEGVNADPVTYNTLIQGFCEVQDIQMAFHIHDRM 650



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 179/388 (46%), Gaps = 5/388 (1%)

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR--ERFKPSLRH 245
           RM   A+E+ +EM  YG    E+    ++D LCK   V EA     E R  ERFKP    
Sbjct: 181 RMTDMALELFEEMEAYGISKSEYSHSIIIDGLCKQDKVGEALSFLQEARKGERFKPLGMS 240

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L+   C  G +  AK  L  M   G  PD   Y+ L+ G  ++G + +A +L + + 
Sbjct: 241 FNVLMSALCNWGFIQPAKSFLCLMLKYGLNPDRYTYSTLIHGLCKIGFLDEAVDLFERVT 300

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G      +Y  LI     +    E  +    M   G E D+VTYT LI+G C+S  ++
Sbjct: 301 EEGMKLETVTYNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILIAGHCESGDVE 360

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              +I + ++ +G+  N +TY  ++ A  KK  + E   L+GE+  IG   D+  Y+++I
Sbjct: 361 EGMKIRNDILDQGLQLNIVTYSVLLNALFKKGLVHEAENLLGEIHSIGLDMDIIAYSILI 420

Query: 426 RLACKLGELKEAVNVWNEMEAAS-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
              CKLGE++ A+ V + M  +  + P + + + ++ G   +G L+EA  Y + +  +  
Sbjct: 421 HGYCKLGEIERALEVCDVMCCSQKVVPTSLNHLSILVGLCKKGLLVEARWYLENVAVK-- 478

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
                      +++   +   +  A  ++  IV  G    +      ++     G ++ A
Sbjct: 479 YQPGDVVLYNVVIDGYAKIGDISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAA 538

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            SY   +  + ++P   T+  LM  L +
Sbjct: 539 ESYFRAIQISSLLPTMVTYTTLMDALSE 566



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 192/407 (47%), Gaps = 22/407 (5%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           + +L+       +V +A  +L E+   G + D   +  L+   CK   ++ A ++ D M 
Sbjct: 381 YSVLLNALFKKGLVHEAENLLGEIHSIGLDMDIIAYSILIHGYCKLGEIERALEVCDVMC 440

Query: 236 -RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVYNNLLSGYAQMGK 293
             ++  P+  +  S+L G CK+G LVEA++ L  +    ++P D+V+YN ++ GYA++G 
Sbjct: 441 CSQKVVPTSLNHLSILVGLCKKGLLVEARWYLENVA-VKYQPGDVVLYNVVIDGYAKIGD 499

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           +++A  L  ++   G  P   +   ++   C+   ++ A   F  ++ S     +VTYTT
Sbjct: 500 ISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAESYFRAIQISSLLPTMVTYTT 559

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+    ++ K++    IL  M+++GI PN +TY  ++    K+    + +  +  M   G
Sbjct: 560 LMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLCKELRFHDAIHFLDNMHGEG 619

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
              D   YN +I+  C++ +++ A ++ + M    + P   ++  +++    +G +I+A 
Sbjct: 620 VNADPVTYNTLIQGFCEVQDIQMAFHIHDRMVYCGIVPTPVTYNFLINVLCLKGQVIQAE 679

Query: 474 EYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAK-------DVWSCIVTKGCELNV 525
              + +  RG+ L    Y TL           K E AK        ++  ++  G E  V
Sbjct: 680 YLLESLRERGIELRKFAYTTLI----------KAECAKGMPYEAISLFGKLLDDGFETTV 729

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             ++  I+ L      KEA  +   M+ A V P    +  L+R L+K
Sbjct: 730 KDFSAAINRLCKRKFAKEAVMFIPFMLSAGVFPDTQVYYVLVRALQK 776



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 4/232 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  LM   + A  V   + +L EM + G +P+   +  ++  LCK     +A
Sbjct: 552 PTMVT---YTTLMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLCKELRFHDA 608

Query: 229 AKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
               D M  E        + +L+ G+C+   +  A ++  +M   G  P  V YN L++ 
Sbjct: 609 IHFLDNMHGEGVNADPVTYNTLIQGFCEVQDIQMAFHIHDRMVYCGIVPTPVTYNFLINV 668

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
               G++  A  LL+ +R +G +    +YT LI+A C      EA   F ++   G E  
Sbjct: 669 LCLKGQVIQAEYLLESLRERGIELRKFAYTTLIKAECAKGMPYEAISLFGKLLDDGFETT 728

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL 399
           V  ++  I+  CK +        +  M+  G+ P+   Y  ++ A +K++EL
Sbjct: 729 VKDFSAAINRLCKRKFAKEAVMFIPFMLSAGVFPDTQVYYVLVRALQKRKEL 780


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 194/361 (53%), Gaps = 4/361 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  L+ +    +    V  +++ M KE+  + +   + IL++ ++S+  +++A ++ +EM
Sbjct: 255 YNTLLNAYVGRKDRKGVDEILKLMEKEQV-VFSVATYSILIQWYSSSGDIEEAEKIFEEM 313

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +   E D +V+  ++    +  ++K A  LFDEM +R   P+   + +L+ G CK G++
Sbjct: 314 REKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQM 373

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
             A+ +L++M+  G + ++V++N  + GY + GKM +A  L   M +KG + +  +Y +L
Sbjct: 374 EAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNIL 433

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
              LC++ + +EA      M   G + +VVT+T  I  +CK   +     +   M ++G 
Sbjct: 434 ANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGE 493

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
           +PN +TY  ++ A+ KKE++++  ++  EM   G +PD+  Y+ +I   C +G + EA+ 
Sbjct: 494 VPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALK 553

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++NEM    ++    ++  M+ G   +G   EA + + EM+  GL+  P      +L+ S
Sbjct: 554 LFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLI--PDDRVFTSLVGS 611

Query: 500 L 500
            
Sbjct: 612 F 612



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 163/332 (49%), Gaps = 6/332 (1%)

Query: 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM--VKK 192
           V S   Y  LI+  S          + EEMR++    I  +V+V       S R+  +K+
Sbjct: 284 VFSVATYSILIQWYSSSGDIEEAEKIFEEMREKN---IEMDVYVYSSMISWSRRLGNMKR 340

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
           A  + DEM +    P+   +G L+  +CK   ++ A  L  EM+ +    +L  F + + 
Sbjct: 341 AFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMD 400

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G+C+ GK+ EA  +   M+  G   D+  YN L +G  ++ +  +A  +L  M  KG  P
Sbjct: 401 GYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKP 460

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           N  ++T+ I+  C+   + EA R F +ME+ G   +++TY TLI  +CK  K+ + ++I 
Sbjct: 461 NVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIK 520

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             MI +G+LP+  TY  ++        ++E ++L  EMR  G   +V+ Y  +I    K 
Sbjct: 521 SEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKE 580

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
           G   EA  +++EM    L P    F  +V  F
Sbjct: 581 GRADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 176/385 (45%), Gaps = 39/385 (10%)

Query: 190 VKKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
           V+KA E++DEM   G  +P+ F +  LL+A       K   ++   M +E+   S+  ++
Sbjct: 232 VEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYS 291

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L+  +   G + EA+ +  +M++   E D+ VY++++S   ++G M  AF L  EM ++
Sbjct: 292 ILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQR 351

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PNA++Y  LI  +C+  +ME A    +EM+  G + ++V + T + G+C+  K+D  
Sbjct: 352 DIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMD-- 409

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
                                            E + L   M K G   DV  YN++   
Sbjct: 410 ---------------------------------EALRLQAIMEKKGINADVFTYNILANG 436

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CKL    EA  + N M    + P   +F + +  +  +G L EA   F++M  +G    
Sbjct: 437 LCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKG--EV 494

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L+++  + +KV+ A  + S ++ KG   ++Y ++  IH     G V EA   
Sbjct: 495 PNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKL 554

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
             +M    +     T+  ++ GL K
Sbjct: 555 FNEMRLKGITRNVATYTSMISGLSK 579



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 3/280 (1%)

Query: 118 GNLGYRYYMWAS-KQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV 176
           GN+   + ++    Q + V +   Y ALI  + K  +  A   L+ EM+ +   L    +
Sbjct: 336 GNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDL-NLVI 394

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F   M  +     + +A+ +   M K G   D F +  L + LCK     EA  + + M 
Sbjct: 395 FNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMV 454

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
           E+  KP++  FT  +  +CKEG L EA+ +   M+  G  P+I+ YN L+  Y +  K+ 
Sbjct: 455 EKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVK 514

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
            A ++  EM  KG  P+  +Y+ LI   C + +++EA + F EM   G   +V TYT++I
Sbjct: 515 QAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMI 574

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
           SG  K  + D  +++ D M++ G++P+   +  ++ +  K
Sbjct: 575 SGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 201/432 (46%), Gaps = 7/432 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI+  ++       + L  +MR +   L +T  F ++++   + ++ K A+ +  E
Sbjct: 319 TYTVLIRGCTEEGMPEKAYELCRQMR-DHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKE 377

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M   G  PD F +  L+  LC+   ++EA  L+++M E   KP +  + SLL  +C  G 
Sbjct: 378 MADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGC 436

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + EA  +  +M   GF P++V Y  L+ G+        A+ LL EM++ G   N  +Y  
Sbjct: 437 MDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNT 496

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC + ++ E        E  G     +TY ++I+GF K+  +   + +   M  +G
Sbjct: 497 LINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKG 556

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I PN +TY   +  + K    +  ++++ ++R  G  PD++ YN +I   C+ G +  A+
Sbjct: 557 IPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHAL 616

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALL 497
            V   M    L P    +   + G+     + EA  ++++M+  G+ L    Y TL   +
Sbjct: 617 QVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTL---I 673

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +   +   V  A  ++S +V KG   +   +T   H L  NG + +A     +M   D+ 
Sbjct: 674 DGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIR 733

Query: 558 PQPDTFAKLMRG 569
           P    +  L+ G
Sbjct: 734 PNVLMYNMLING 745



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 180/401 (44%), Gaps = 3/401 (0%)

Query: 171 LITTEV-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           L+ T+V + +L+R      M +KA E+  +M  +G  P    F  ++  L  +   K+A 
Sbjct: 313 LVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAV 372

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
            LF EM +   P    +  L++  C+  K+ EA  +  +M + G +P IV Y++LL  Y 
Sbjct: 373 SLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYC 432

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
             G M +A +L  EM  KG  PN  +YT L++        ++A     EM+++G   +  
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY 492

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY TLI+G C   ++    E+L      G +P  +TY  I+    K   +     +  +M
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
              G  P++  Y   I   CK      A+ + N++    L P   ++  +++GF  +G +
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNM 612

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A +    M+  GLL  P      + +      + +E A   +  ++ +G +L+   +T
Sbjct: 613 SHALQVLVLMLKDGLL--PNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYT 670

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             I     +G+V  A     +M+    +P   TF  L  GL
Sbjct: 671 TLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGL 711



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 6/351 (1%)

Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ 170
           +N C D     Y         PN V     Y  L+K       F   +AL+ EM++    
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVV----TYTTLMKGHINKAAFDKAYALLAEMKQNGVS 488

Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
                 +  L+        V +  E+L      G  P    +  +++   K   +  A  
Sbjct: 489 -CNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFA 547

Query: 231 LFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
           ++ +M  +   P++  +TS + G+CK      A  +L  ++  G  PDI  YN+L+ G+ 
Sbjct: 548 VYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFC 607

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           Q G M+ A ++L  M + G  PN + Y   I     ++ MEEA R + +M + G + D  
Sbjct: 608 QEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTA 667

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TYTTLI GF K   +    ++   M+ +G +P+ +T+  +     +  ++++  +L+ EM
Sbjct: 668 TYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEM 727

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
            ++   P+V  YN++I    + G+L+EA  + +EM    + P   ++ ++V
Sbjct: 728 NRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 148/318 (46%), Gaps = 4/318 (1%)

Query: 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228
           P ++T   +  LM+   +     KA  +L EM + G   +++ +  L++ LC    V E 
Sbjct: 454 PNVVT---YTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEV 510

Query: 229 AKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
            ++      E F P+   + S++ G+ K G +  A  V  QM   G  P+IV Y + + G
Sbjct: 511 GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDG 570

Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
           Y +      A ++L ++R KG  P+  +Y  LI   C+   M  A +  V M + G   +
Sbjct: 571 YCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPN 630

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           +  Y + I+G+   + ++      + MI+ GI  +  TY  ++    K   +   ++L  
Sbjct: 631 ISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYS 690

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM   G +PD   +  +    C+ G++ +A  + +EM    + P    + ++++G+L  G
Sbjct: 691 EMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNG 750

Query: 468 CLIEACEYFKEMVGRGLL 485
            L EA     EM+ R ++
Sbjct: 751 KLQEAFRLHDEMLERKIM 768



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 163/379 (43%), Gaps = 12/379 (3%)

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G   D ++F  ++ A  K     +A +LFDEM     +P  R  +  +   CK  
Sbjct: 167 EMRGKGHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
               A  VL +M+DAGF P    +N+++    + G+M +A  +  E+   G   +    T
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLAT 286

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            L+   C   ++ +A   F E  R G     VTYT LI G  +    ++ YE+   M   
Sbjct: 287 TLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDH 346

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+LP+   +  ++      +  ++ V L  EM   G +PD   YN++I   C+  +++EA
Sbjct: 347 GLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG-IPDAFTYNILIHWLCQRRKIREA 405

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFL----GQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +N+W +M    + P    ++V  H  L      GC+ EA + + EM G+G    P   T 
Sbjct: 406 LNLWEKMNETGVKP----YIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGF--TPNVVTY 459

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             L+   +     + A  + + +   G   N Y +   I+ L   G V E          
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFET 519

Query: 554 ADVMPQPDTFAKLMRGLKK 572
              +P   T+  ++ G  K
Sbjct: 520 EGFVPTAMTYNSIINGFIK 538



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 141/341 (41%), Gaps = 46/341 (13%)

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
            M+  G  PD     +LL+  A+     DA  LL EMR KG   +A  + V+++A  +  
Sbjct: 132 SMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEG 191

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY- 386
             ++A R F EM  S  E D    +  I+  CK R  +R   +L  M   G +P   T+ 
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 387 ---------------LHI---MLAHEKK----------------EELEECVELMGEMRKI 412
                          LHI   +LA  KK                 E+ + +++  E  + 
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           G VP    Y V+IR   + G  ++A  +  +M    L P T+ F +++ G L      +A
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDA 371

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
              FKEM   G+   P   T   L++ L + +K+  A ++W     K  E  V  + +  
Sbjct: 372 VSLFKEMADSGI---PDAFTYNILIHWLCQRRKIREALNLWE----KMNETGVKPYIVTY 424

Query: 533 HSLF----SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           HSL      NG + EA     +M      P   T+  LM+G
Sbjct: 425 HSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKG 465


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 173/359 (48%), Gaps = 8/359 (2%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
           ++F +LMR       +  A  V DEM   G       F  ++  +C+   +  A  L   
Sbjct: 241 KLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRR 300

Query: 235 MRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
           M E    P +  + +L+ G C+ G++ +A+ V  +M   G +P+ VV+  L+  + + G 
Sbjct: 301 MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 360

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
                EL +EMR +G  P+A +Y  ++  LCR   ++ A+   VEM  +G   D VTYTT
Sbjct: 361 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 420

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           LI G+CK  ++D   EI  +M+  G+  +++TY  ++    K     +   ++GEM + G
Sbjct: 421 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 480

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
             PD + Y +VI   C+ G++K  + +  EM+     PG  ++ V+++GF   G +  A 
Sbjct: 481 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 540

Query: 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC--ELNVYAWTI 530
                M+  G+  +P   T   LL+   +  KV    D+      KG   +L VY   +
Sbjct: 541 MLLNAMINIGV--SPDDITYNILLDGHCKHGKV---TDIEELKSAKGTVPDLGVYTSIV 594



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 2/313 (0%)

Query: 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320
           EA    +Q+ DAG  P+  ++N L+    ++G++  A  +  EM+ +G      S+  +I
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 321 QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380
             +CR   ++ A      M  +G   DV TY  LI G C+  +I+    + + M  RG+ 
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 342

Query: 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           PN + +  ++ AH KK + E  +EL  EMR+ G  PD   YN ++   C+  +LK A  +
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 402

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500
             EM +A L P T ++  ++ G+  +  L  A E  + MV  G+       T  AL++ L
Sbjct: 403 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGV--GLDEVTYTALISGL 460

Query: 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
            +A +   A+ V   ++  G E +   +T+ I +    G VK       +M +    P  
Sbjct: 461 SKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGV 520

Query: 561 DTFAKLMRGLKKL 573
            T+  +M G  KL
Sbjct: 521 VTYNVIMNGFCKL 533



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y ALI+ L ++ +      + E+M  R  KP  +   VF IL+         +  +E+  
Sbjct: 313 YGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAV---VFTILIDAHCKKGDAETMLELHR 369

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM + G  PD   +  +++ LC+   +K A+ +  EMR    +P    +T+L+ G+CKE 
Sbjct: 370 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 429

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L  A  +   M   G   D V Y  L+SG ++ G+  DA  +L EM   G +P+  +YT
Sbjct: 430 ELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYT 489

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           ++I A CR   ++   R   EM+  G +  VVTY  +++GFCK  ++     +L++MI  
Sbjct: 490 MVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINI 549

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           G+ P+ +TY  ++  H K  ++ +  EL       G VPD+  Y  ++
Sbjct: 550 GVSPDDITYNILLDGHCKHGKVTDIEELKSAK---GTVPDLGVYTSIV 594



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 132/268 (49%), Gaps = 3/268 (1%)

Query: 172 ITTEVFV--ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
           +T +V+    L++       ++ A  V ++M   G +P+  VF  L+DA CK    +   
Sbjct: 306 VTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETML 365

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
           +L  EMRER  +P    + +++ G C+   L  A  ++V+M+ AG  PD V Y  L+ GY
Sbjct: 366 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 425

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
            +  ++  A E+ + M  +G   +  +YT LI  L +  +  +A R   EM  +G E D 
Sbjct: 426 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 485

Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408
            TYT +I  FC+   +     +L  M  +G  P  +TY  IM    K  +++    L+  
Sbjct: 486 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNA 545

Query: 409 MRKIGCVPDVSNYNVVIRLACKLGELKE 436
           M  IG  PD   YN+++   CK G++ +
Sbjct: 546 MINIGVSPDDITYNILLDGHCKHGKVTD 573



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 2/331 (0%)

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P  + F  L+    + G+L  A+ V  +M+  G    +V +N ++SG  + G +  A 
Sbjct: 236 LPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAE 295

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L + M   G  P+  +Y  LIQ LCR+ ++E+A   F +M   G + + V +T LI   
Sbjct: 296 TLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAH 355

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           CK    +   E+   M +RG+ P+ +TY  I+    +  +L+    ++ EMR  G  PD 
Sbjct: 356 CKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 415

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             Y  +I   CK  EL  A+ +   M A  +     ++  ++ G    G   +A     E
Sbjct: 416 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 475

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M+  GL   P   T   ++++  R   V+    +   +  KG +  V  + + ++     
Sbjct: 476 MMEAGL--EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 533

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           G +K A      M++  V P   T+  L+ G
Sbjct: 534 GQMKNADMLLNAMINIGVSPDDITYNILLDG 564



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
           EAC ++ +++  GL   P+      L+  L+R  ++  A++V+  + ++G    V ++  
Sbjct: 223 EACAFYLQLLDAGL--PPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNT 280

Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
            I  +   G +  A +    M +A V P   T+  L++GL ++   + A  + EK+
Sbjct: 281 MISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 197/414 (47%), Gaps = 44/414 (10%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWAL-MEEMRKEKPQLITTEVFVILMRRFASA 187
           S++ N+V        L+  + K+   G VW   ME +    P  +   VF ILM +F   
Sbjct: 196 SRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDAGFP--LNVYVFNILMNKFCKE 253

Query: 188 RMVKKAIEVLDE-----------------------------------MPKYGCEPDEFVF 212
             +  A +V DE                                   M K    PD F +
Sbjct: 254 GNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTY 313

Query: 213 GCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
             L++ALCK + +  A +LF EM ER   P+   FT+L++G  + G++   K    +M  
Sbjct: 314 SALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLS 373

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            G +PDIV+YN L++G+ + G +  A  ++  M R+G  P+  +YT LI   CR   ++ 
Sbjct: 374 KGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDT 433

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
           A     EM+++G E D V ++ LI G CK  ++      L  M++ G+ P+ +TY  +M 
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMD 493

Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
           A  KK + +   +L+ EM+  G +P+V  YNV++   CKLG++K A  + + M    + P
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVP 553

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505
              ++  ++ G         A +++K+    G+++     + K+L+N L RA K
Sbjct: 554 DDITYNTLLEGHHRHA---NASKHYKQKPEIGIVA--DLASYKSLVNELYRASK 602



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 165/328 (50%), Gaps = 7/328 (2%)

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYG 252
           +E+LD     G   + +VF  L++  CK  ++ +A K+FDE+ +R  +P++  F +L+ G
Sbjct: 229 MEILDA----GFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLING 284

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           +CK G L     +   M+ +   PD+  Y+ L++   +  KM  A  L  EM  +G  PN
Sbjct: 285 YCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPN 344

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
              +T LI    R  +++    ++ +M   G + D+V Y TL++GFCK+  +     I+D
Sbjct: 345 DVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVD 404

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            MI+RG+ P+++TY  ++    +  +++  +E+  EM + G   D   ++ +I   CK G
Sbjct: 405 GMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEG 464

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
            + +A     EM  A + P   ++ +M+  F  +G      +  KEM   G +  P   T
Sbjct: 465 RVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHI--PNVVT 522

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG 520
              LLN L +  +++ A  +   ++  G
Sbjct: 523 YNVLLNGLCKLGQMKNADMLLDAMLNVG 550



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 201/457 (43%), Gaps = 30/457 (6%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
           + ++ + S QP +  + + Y  + + L+    F    +L+E +   K +   + VF+ L+
Sbjct: 102 FAFFKFISSQPEFRFTVETYFVMARFLAIHEMFVEAQSLIELVVSRKGKNSASSVFISLV 161

Query: 182 RRFASARMVKKAIEVLDEMPKY---GCEPDEFVFGCLLDALCKN--SSVKEAAKLFDEMR 236
               +  M    ++ L  M  Y   G  PD  V  C   +   N    ++    L D M 
Sbjct: 162 EMRGTP-MCDFLVDAL--MITYMDLGFIPD--VIQCFRLSRKHNFVVPIRGCGNLLDRMM 216

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
            +  P     T  ++G+  E            + DAGF  ++ V+N L++ + + G + D
Sbjct: 217 -KLNP-----TGTVWGFYME------------ILDAGFPLNVYVFNILMNKFCKEGNICD 258

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A ++  E+ ++   P   S+  LI   C++  ++   R    ME+S    DV TY+ LI+
Sbjct: 259 AQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALIN 318

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             CK  K+D  + +   M +RG++PN + +  ++  H +  +++   E   +M   G  P
Sbjct: 319 ALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQP 378

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
           D+  YN ++   CK G+L  A N+ + M    L P   ++  ++ GF   G +  A E  
Sbjct: 379 DIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIR 438

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           KEM   G +   + G   AL+  + +  +V  A+     ++  G + +   +T+ + +  
Sbjct: 439 KEMDQNG-IELDRVG-FSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFC 496

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             G  +       +M     +P   T+  L+ GL KL
Sbjct: 497 KKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKL 533



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 149/345 (43%), Gaps = 20/345 (5%)

Query: 259 LVEAKYVLVQMKDAGFEPDIVV-------YN---------NLLSGYAQMGKMTDAFELLK 302
           LV+A  +++   D GF PD++        +N         NLL    ++      +    
Sbjct: 172 LVDA--LMITYMDLGFIPDVIQCFRLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYM 229

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           E+   G   N   + +L+   C+   + +A + F E+ +      VV++ TLI+G+CK  
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVG 289

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
            +D  + +   M +    P+  TY  ++ A  K+ +++    L  EM + G +P+   + 
Sbjct: 290 NLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFT 349

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            +I    + G++      + +M +  L P    +  +V+GF   G L+ A      M+ R
Sbjct: 350 TLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRR 409

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           GL   P   T   L++   R   V+ A ++   +   G EL+   ++  I  +   G V 
Sbjct: 410 GL--RPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVI 467

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           +A     +M+ A + P   T+  +M    K  + Q   ++ ++++
Sbjct: 468 DAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQ 512



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/316 (18%), Positives = 125/316 (39%), Gaps = 51/316 (16%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA----LCRMEKMEEANRA---F 336
           L+  Y  +G + D  +  +  R+       +++ V I+     L RM K+         +
Sbjct: 176 LMITYMDLGFIPDVIQCFRLSRK-------HNFVVPIRGCGNLLDRMMKLNPTGTVWGFY 228

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
           +E+  +G   +V  +  L++ FCK   I    ++ D + +R + P               
Sbjct: 229 MEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPT-------------- 274

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
                                V ++N +I   CK+G L     + + ME +   P   ++
Sbjct: 275 ---------------------VVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTY 313

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             +++    +  +  A   F EM  RGL+  P       L++   R  ++++ K+ +  +
Sbjct: 314 SALINALCKENKMDGAHRLFYEMCERGLI--PNDVIFTTLIHGHSRNGQIDLMKESYQKM 371

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576
           ++KG + ++  +   ++    NG +  A +    M+   + P   T+  L+ G  +  + 
Sbjct: 372 LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDV 431

Query: 577 QIAAEITEKVRKMAAE 592
             A EI +++ +   E
Sbjct: 432 DTALEIRKEMDQNGIE 447


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 182/381 (47%), Gaps = 19/381 (4%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI  L K+ +  A   L++ +  +  QL    ++  ++      + V  A ++  EM
Sbjct: 163 YGTLIHGLCKVGETRAALDLLQRVDGKLVQL-NAVMYNTVIYGMCKDKHVNDAFDLYSEM 221

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
              G  P+   +  L+        +K+A  LF+++  E  KP    F  L+ G+CK+ K+
Sbjct: 222 VSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKM 281

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            E K V   M   G  PD+V YN+L+ GY  + ++  A  +   M + G +P+  SY +L
Sbjct: 282 KEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNIL 341

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I   C+++K+++A   F EM       +VVTY +LI G  KS +I    +++D M  RG+
Sbjct: 342 INGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 401

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN LTY  I+ A  K  ++++ + L+ + +  G  P +  Y ++I   CK+      VN
Sbjct: 402 PPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVN 461

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
            +N               VM+HGF  +G   EA     +M     +  P   T +  + S
Sbjct: 462 TYN---------------VMIHGFCKKGLFDEALSLLSKMKDSSCI--PNAVTYEITIRS 504

Query: 500 LLRAQKVEMAKDVWSCIVTKG 520
           LL   + + A+ ++  ++T+G
Sbjct: 505 LLDNNENDKAEKLFREMITRG 525



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 7/403 (1%)

Query: 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
           F S   V  A+ + + + +    P  F F  +L +L K+        L  +M  R  KP+
Sbjct: 61  FHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPN 120

Query: 243 LRHFTSLLYGWCKEG----KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
           L +   L+Y +C+ G    ++ +A     ++   GF  D V Y  L+ G  ++G+   A 
Sbjct: 121 LFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAAL 180

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           +LL+ +  K    NA  Y  +I  +C+ + + +A   + EM   G   +VVTY+ LISGF
Sbjct: 181 DLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 240

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
               K+    ++ + +I   I P+  T+  ++    K  +++E   +   M K G +PDV
Sbjct: 241 FVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDV 300

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN ++   C + E+  A +++N M    ++P   S+ ++++GF     + +A   F E
Sbjct: 301 VTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE 360

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M  + ++  P   T  +L++ L ++ ++  A  +   +  +G   N+  +   I +LF  
Sbjct: 361 MHCKNII--PNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKT 418

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581
             V +A +      D  + P   T+  L+ GL K+    I   
Sbjct: 419 HQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVN 461



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/358 (19%), Positives = 152/358 (42%), Gaps = 41/358 (11%)

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRR------------------------------ 306
           + + Y++  + +     + DA  L   + R                              
Sbjct: 50  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLS 109

Query: 307 -----KGCDPNANSYTVLIQALCRMEKME-EANRAFVEMER---SGCEADVVTYTTLISG 357
                +G  PN  +  +LI   C++  +  + ++AF+  ++    G   D V+Y TLI G
Sbjct: 110 QKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHG 169

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            CK  +     ++L  +  + +  N + Y  ++    K + + +  +L  EM   G  P+
Sbjct: 170 LCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPN 229

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           V  Y+ +I     +G+LK+A++++N++   ++ P   +F ++V GF     + E    F 
Sbjct: 230 VVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFA 289

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537
            M+ +G++  P   T  +L++     ++V  AK +++ +   G   ++ ++ I I+    
Sbjct: 290 MMMKQGII--PDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCK 347

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
              V +A +   +M   +++P   T+  L+ GL K      A ++ +++        I
Sbjct: 348 IKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNI 405


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 170/343 (49%), Gaps = 3/343 (0%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL+  F     V   + VL ++ K G EP    F  LL+ LC    + +   L+D+M  R
Sbjct: 102 ILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVR 161

Query: 239 -FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
             +P++  +  ++    K GK  EA   L QM+  G  P++V Y+ L+ GY   G+M +A
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
             +   M  KGC PN  +YT L+   C++E++EEA +   E  R G   D+VT+TT+ISG
Sbjct: 222 RSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISG 281

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
            C++ +     ++   +   G  PN +TY  ++    K   LEE   L  EM++    P+
Sbjct: 282 LCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPN 341

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  Y ++I   CK G++K+   +++ +    L P   ++  +V     +G +IEA + F+
Sbjct: 342 LVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFR 401

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
           +M   G    P       ++   L+ +   MA+ +   +V +G
Sbjct: 402 KMEEDG--CTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRG 442



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 161/325 (49%), Gaps = 11/325 (3%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P IV ++ L S   +MG       L KE+   G + + +S ++LI   C + +++     
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G E  +VT+TTL++G C   K+D+   + D M+ RG+ PN  TY  I+ +  K
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             +  E +  + +M K+GCVP+V NY+ +I   C  G++ EA +V++ M +   +P   +
Sbjct: 180 SGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYT 239

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  +++G+     + EA +   E + +GL+  P   T   +++ L RA +   A+ ++  
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETLRKGLV--PDIVTFTTIISGLCRAGRPLAAQQLFRY 297

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL----- 570
           I   G   N+  + + +  L  +G+++EA +   +M  + V P    +  L+  L     
Sbjct: 298 ICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGK 357

Query: 571 ----KKLYNRQIAAEITEKVRKMAA 591
               K+L++R I   +   V    A
Sbjct: 358 IKDGKELFSRLIDEGLKPNVYTYTA 382



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 146/293 (49%), Gaps = 10/293 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASAR 188
           QPN V++Y+V   +I SLSK  K       +++M K    P ++    +  L+  +    
Sbjct: 164 QPN-VYTYNV---IINSLSKSGKANEALGFLKQMEKVGCVPNVVN---YSTLIDGYCLRG 216

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFT 247
            + +A  V D M   GC P+ + +  L++  CK   ++EA +L DE +R+   P +  FT
Sbjct: 217 QMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFT 276

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++ G C+ G+ + A+ +   +   G  P+I+ Y  LL G  + G + +AF L +EM+R 
Sbjct: 277 TIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRS 336

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
              PN   YT+LI +LC+  K+++    F  +   G + +V TYT L+   CK   I   
Sbjct: 337 TVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEA 396

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
           +++   M + G  P++  Y  I+    + ++     +L+ EM   G   D + 
Sbjct: 397 HKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 37/330 (11%)

Query: 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302
           +   + L+  +C   ++     VL ++   G EP IV +  LL+G    GKM     L  
Sbjct: 97  IHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYD 156

Query: 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362
           +M  +G  PN  +Y V+I +L +  K  EA     +ME+ GC  +VV Y+TLI G+C   
Sbjct: 157 DMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRG 216

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           ++D    + D M+ +                                   GC P+V  Y 
Sbjct: 217 QMDEARSVFDLMVSK-----------------------------------GCTPNVYTYT 241

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            ++   CK+  ++EAV + +E     L P   +F  ++ G    G  + A + F+ +   
Sbjct: 242 SLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAH 301

Query: 483 GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542
           G    P   T   LL+ L +   +E A  ++  +     + N+  +TI I SL   G +K
Sbjct: 302 G--HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIK 359

Query: 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +       ++D  + P   T+  L+  L K
Sbjct: 360 DGKELFSRLIDEGLKPNVYTYTALVGALCK 389



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 6/217 (2%)

Query: 141 YRALIKSLSKMRKFG-AVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+    K+ +   AV  L E +RK   P ++T   F  ++     A     A ++  
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVT---FTTIISGLCRAGRPLAAQQLFR 296

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
            +  +G  P+   +G LLD LCK+ +++EA  LF EM R   KP+L  +T L+   CK G
Sbjct: 297 YICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCG 356

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           K+ + K +  ++ D G +P++  Y  L+    + G + +A +L ++M   GC P+  +Y 
Sbjct: 357 KIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYN 416

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
           V+IQ   + +    A +   EM   G  AD  T   L
Sbjct: 417 VIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALL 453



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 3/225 (1%)

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M+ R  LP  + +  +  +  +    E  V L  E+  +G   D+ + +++I   C L  
Sbjct: 53  MLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHR 112

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +   ++V +++    L P   +F  +++G   +G + +    + +M+ RGL   P   T 
Sbjct: 113 VDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGL--QPNVYTY 170

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             ++NSL ++ K   A      +   GC  NV  ++  I      G + EA S    M+ 
Sbjct: 171 NVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVS 230

Query: 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITF 597
               P   T+  LM G  K+   + A + + E +RK      +TF
Sbjct: 231 KGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTF 275


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 192/411 (46%), Gaps = 38/411 (9%)

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           +V++A  +  ++   G  P+ F +  L+D LCKN    +A +LF EM  R  +P+   + 
Sbjct: 318 LVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYA 377

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            L++  CK G + +A  +  +M+D G +  +  YN+L++GY + G +  A  LL  M ++
Sbjct: 378 ILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 437

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P A SY+ LI  LCR   +  A     EM   G   +  T+T LI+GFCK +K+D  
Sbjct: 438 GLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 497

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             + D MI   ++PN++T+  ++  +     + +  +L  +M ++G  PD   Y  +I  
Sbjct: 498 ARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISG 557

Query: 428 AC-----------------------------------KLGELKEAVNVWNEMEAASLSPG 452
            C                                   + G   E  ++W+EM    +   
Sbjct: 558 LCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLD 617

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             SF ++V+  L Q    ++C  F+EM  +G+   P       ++++L + + +  A + 
Sbjct: 618 LVSFTIIVYAALKQHDKEKSCVLFREMKEQGV--KPDDIFYTCMIDALSKEENMIQALNC 675

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
           W  +V  G   N    T+ I++L  +G++  A   C +M+  +V+P   T+
Sbjct: 676 WDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTY 726



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 228/509 (44%), Gaps = 17/509 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN V     Y  LI +L K         L ++MR +K   +T   +  L+  +     +
Sbjct: 370 EPNEV----TYAILIHALCKRGMIEDALCLFDKMR-DKGIKVTVYPYNSLINGYCKQGSL 424

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            +A  +L  M K G  P    +  L+  LC+N  +  A +L  EM ER    +   FT+L
Sbjct: 425 DRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTAL 484

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+CK+ K+ EA  +  +M D+   P+ V +N ++ GY  +G +  AF+L  +M   G 
Sbjct: 485 INGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGL 544

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
            P+  +Y  LI  LC    + +AN    ++E S    +  + T L+ G  +  +    Y 
Sbjct: 545 KPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYH 604

Query: 370 ILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429
           + D M  RG+  + +++  I+ A  K+ + E+   L  EM++ G  PD   Y  +I    
Sbjct: 605 LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALS 664

Query: 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           K   + +A+N W++M     SP T +  V+++     G L  A    KEM+   +L  P 
Sbjct: 665 KEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVL--PN 722

Query: 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549
             T    L+       +E AKD+ S ++ +G   ++ ++ I I  L   G ++EA     
Sbjct: 723 KFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMR 781

Query: 550 DMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI-TEKVRKMAAERQITFKMYKR----RG 604
            + ++   P   +++ ++  L K+ +   A E+  E + K      + + ++ R     G
Sbjct: 782 KITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHG 841

Query: 605 ERDLKEKAKKQVDGRKRRARQRRWGGGRS 633
           E D   KA        R   Q  W   R+
Sbjct: 842 ESD---KALGIYTNMIRSGVQPNWDTYRA 867



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 195/407 (47%), Gaps = 6/407 (1%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           VY A I++  + R       L+  M  E  +  +   + +LM        V++A+EV + 
Sbjct: 200 VYTAGIRAYCESRNLDGARGLVVRMESEGVK-ASAVPYNVLMYGLCKNMRVQEAVEVKNV 258

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL-FDEMRERFKPSLRHFTSLLYGWCKEGK 258
           M   G   DE  +  L+   C+   ++ A ++  D +R  F PS  +  S +    ++ +
Sbjct: 259 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEAN-CSFMIDELRKKE 317

Query: 259 LVEAKYVLV-QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           LVE  + L  ++ D G  P++  YN L+    +  +  DA  L KEM  +G +PN  +Y 
Sbjct: 318 LVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYA 377

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI ALC+   +E+A   F +M   G +  V  Y +LI+G+CK   +DR   +L  M++ 
Sbjct: 378 ILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 437

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G+ P   +Y  ++    +  +L   +EL  EM + G   +   +  +I   CK  ++ EA
Sbjct: 438 GLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 497

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             ++++M  +++ P   +F VM+ G+   G + +A + + +MV  GL   P   T ++L+
Sbjct: 498 ARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGL--KPDNYTYRSLI 555

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
           + L     V  A +  + +      LN ++ T  ++ LF  G   E 
Sbjct: 556 SGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTET 602



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 201/433 (46%), Gaps = 44/433 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDE 199
           + ALI    K +K      L ++M      +I  EV F +++  +     ++KA ++ D+
Sbjct: 481 FTALINGFCKDKKMDEAARLFDKMIDS--NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQ 538

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF--TSLLYGWCKEG 257
           M + G +PD + +  L+  LC  S V +A +   ++   +   L +F  T+LLYG  +EG
Sbjct: 539 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA-VLNNFSLTALLYGLFREG 597

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  E  ++  +M   G + D+V +  ++    +      +  L +EM+ +G  P+   YT
Sbjct: 598 RFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYT 657

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I AL + E M +A   + +M   G   + VT+T LI+  CKS  +     +   M+  
Sbjct: 658 CMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAG 717

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            +LPN+ TY   +     + ++E+  +L   M + G +  + ++N++I+  CK G+++EA
Sbjct: 718 NVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEA 776

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           +++  ++  +  SP   S+  ++H         E C                        
Sbjct: 777 IDLMRKITESGFSPDCISYSTIIH---------ELC------------------------ 803

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
               +   +  A ++W+ ++ KG + +V A+ I+I     +G   +A     +M+ + V 
Sbjct: 804 ----KMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQ 859

Query: 558 PQPDTFAKLMRGL 570
           P  DT+  L+ G+
Sbjct: 860 PNWDTYRALLSGI 872



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 183/414 (44%), Gaps = 44/414 (10%)

Query: 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR- 236
           ++ +R+FA AR      ++ D+M + G   DE+V+   + A C++ ++  A  L   M  
Sbjct: 173 LVKIRQFALAR------DLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES 226

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           E  K S   +  L+YG CK  ++ EA  V   M + G   D V Y  L+ G+ +M ++  
Sbjct: 227 EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEM 286

Query: 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
           A  +  +M R G  P+  + + +I  L + E +EEA     ++   G   +V  Y  LI 
Sbjct: 287 ALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALID 346

Query: 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
             CK+ + D    +   M  RG+ PN++TY  ++ A  K+  +E+ + L  +MR  G   
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKV 406

Query: 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476
            V  YN +I   CK G L  A  + + M    L+P   S+  ++ G    G L  A E  
Sbjct: 407 TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELH 466

Query: 477 KEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           +EM  RG+                            W          N Y +T  I+   
Sbjct: 467 REMAERGI---------------------------AW----------NNYTFTALINGFC 489

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
            +  + EA      M+D++V+P   TF  ++ G   + N + A ++ +++ +M 
Sbjct: 490 KDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMG 543



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 162/355 (45%), Gaps = 5/355 (1%)

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           + +L+   K  +   A+ +  +M  +G   D  VY   +  Y +   +  A  L+  M  
Sbjct: 167 SQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES 226

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           +G   +A  Y VL+  LC+  +++EA      M   G  AD VTY TL+ GFC+  +++ 
Sbjct: 227 EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEM 286

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              I   MI+ G +P++     ++    KKE +EE   L  ++  +G VP+V  YN +I 
Sbjct: 287 ALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALID 346

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-L 485
             CK     +A  ++ EM    L P   ++ +++H    +G + +A   F +M  +G+ +
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKV 406

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
           +   Y    +L+N   +   ++ A+ + S +V +G      +++  I  L  NG +  A 
Sbjct: 407 TVYPY---NSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAM 463

Query: 546 SYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITFKM 599
               +M +  +     TF  L+ G  K      AA + +K +       ++TF +
Sbjct: 464 ELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 166/378 (43%), Gaps = 60/378 (15%)

Query: 143 ALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           AL+  L +  +F   + L +EM  R  K  L++   F I++         +K+  +  EM
Sbjct: 588 ALLYGLFREGRFTETYHLWDEMAVRGVKLDLVS---FTIIVYAALKQHDKEKSCVLFREM 644

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKL 259
            + G +PD+  + C++DAL K  ++ +A   +D+M  + + P+    T L+   CK G L
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYL 704

Query: 260 VEAKYVLVQMKDAGFEPD----------------------------------IVVYNNLL 285
             A+ +  +M      P+                                  IV +N L+
Sbjct: 705 GSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILI 764

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
            G  + GK+ +A +L++++   G  P+  SY+ +I  LC+M  + +A   + EM   G +
Sbjct: 765 KGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLK 824

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY------LHIMLAHE----- 394
            DVV Y   I       + D+   I  +MI+ G+ PN  TY      + +ML ++     
Sbjct: 825 PDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFSCFR 884

Query: 395 -KKEELEECV-ELMGEM-----RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
             K+ ++  V ELM        R+I  V D  +  +++    +L +    ++  ++++  
Sbjct: 885 GTKQYIQISVYELMDSTHNKSHRRIWFVDDHKSGEIILEFDGRLNKWG-VISFRSDVKVK 943

Query: 448 SLSPGTD-SFVVMVHGFL 464
            LSPG   SF     G++
Sbjct: 944 KLSPGPQVSFPTHQSGYM 961



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 43/325 (13%)

Query: 313 ANSYTV--LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
            N YT   ++ +L ++ +   A   F +M +SG   D   YT  I  +C+SR +D    +
Sbjct: 161 VNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGL 220

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           +  M   G+  + + Y  +M    K   ++E VE+   M  IG   D   Y  ++   C+
Sbjct: 221 VVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCR 280

Query: 431 LGELKEAVNVWNEMEAASLSPGTD--SFVV-----------------------MVHGFLG 465
           + EL+ A+ + ++M      P     SF++                       MV     
Sbjct: 281 MEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFA 340

Query: 466 QGCLI----------EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
              LI          +A   FKEM GRGL   P   T   L+++L +   +E A  ++  
Sbjct: 341 YNALIDKLCKNERFDDADRLFKEMAGRGL--EPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
           +  KG ++ VY +   I+     G +  A      M+   + P   +++ L+ GL +  +
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 576 RQIAAEITEKVRKMAAERQITFKMY 600
              A E+  ++    AER I +  Y
Sbjct: 459 LSSAMELHREM----AERGIAWNNY 479



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 2/231 (0%)

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SG   +  T + ++    K R+     ++ D M+Q G+  ++  Y   + A+ +   L+ 
Sbjct: 157 SGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDG 216

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
              L+  M   G       YNV++   CK   ++EAV V N M    ++    ++  +V+
Sbjct: 217 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 276

Query: 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521
           GF     L  A     +M+  G +  P       +++ L + + VE A  +   +   G 
Sbjct: 277 GFCRMEELEMALRITHDMIRLGFV--PSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             NV+A+   I  L  N    +A     +M    + P   T+A L+  L K
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCK 385


>gi|449436631|ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]
          Length = 1559

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 190/387 (49%), Gaps = 13/387 (3%)

Query: 100 VVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWA 159
            +L PG   R + R        Y ++ W   +  + H+ + Y  ++  L K  +F   W 
Sbjct: 601 TILEPGTLHRRLPR-------SYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWV 653

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           L+  MR+          F IL +R+A A +V +AI   + + ++    DE  F  L+DAL
Sbjct: 654 LINRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLREFKLR-DETSFCNLIDAL 712

Query: 220 CKNSSVKEAAKL-FDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
           C++  V EA +L F + R+     S +    +L GW K G   + +    +M   G   D
Sbjct: 713 CESRHVDEAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKD 772

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +  Y+  +    + GK   A +L KEM++KG   +  +Y  +I A+   E ++ A+R F 
Sbjct: 773 LHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFH 832

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
           EM+  GC+ +VVT  T+I  FC++ +    + +LD M++R   PN +TY     + EK +
Sbjct: 833 EMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPK 892

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           E+   + L   M K G  P +  Y +++R   + G L+    VWN+ME    SP   ++ 
Sbjct: 893 EI---LVLFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYN 949

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGL 484
            ++   + +G +  A +Y +EMV +GL
Sbjct: 950 ALIDALVEKGMIDMARKYDEEMVAKGL 976



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 124/321 (38%), Gaps = 46/321 (14%)

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRMEKMEEA 332
           F+     YN +L    +  +   ++ L+  MR+     P+  ++ +L +       + EA
Sbjct: 628 FDHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRYALAHLVSEA 687

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
             A+ E  R     D  ++  LI   C+SR +D   E+                      
Sbjct: 688 IAAY-ERLREFKLRDETSFCNLIDALCESRHVDEAQELC--------------------- 725

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
                         G+ RK+ C      +N+++R   K+G   +  + W EM+   +   
Sbjct: 726 -------------FGKNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKD 772

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKD 511
             S+ + +      G   +A + +KEM  +G+ L    Y T+   ++++  ++ V+ A  
Sbjct: 773 LHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTV---IHAVGISEGVDFASR 829

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           V+  +   GC+ NV      I     NG  K+A      M+  D  P   T+    R L+
Sbjct: 830 VFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLE 889

Query: 572 K------LYNRQIAAEITEKV 586
           K      L++R I   +  K+
Sbjct: 890 KPKEILVLFDRMIKYGVHPKM 910


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 199/441 (45%), Gaps = 7/441 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           + +L+  LS+         L   M +  P   T   +  ++R       + +A+  L  M
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLM 179

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + G  PD + F  L+   C+ + V  A  LFD+M  R F   +  + +L+ G C+ G++
Sbjct: 180 VRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRI 239

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA  +  +M     +PD+ +Y  L+ G     +  +   +L+ M+  G  P+  +Y  +
Sbjct: 240 DEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAV 295

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +   CR  K +EA     EM   G    VVT T +I+ +CK  ++     +L+ M  RG 
Sbjct: 296 VDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 355

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN  TY  ++     + ++ + + L+ +MR  G  PD   YN++IR  C  G ++ A  
Sbjct: 356 KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFR 415

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           +   ME   L     ++  +++     G   +AC  F  +  RG+   P   T  +L+N 
Sbjct: 416 LLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI--KPNAVTFNSLING 473

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           L ++ K ++A      +V+ GC  + Y ++ +I  L      +E  S+  +M+  DV P 
Sbjct: 474 LCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 533

Query: 560 PDTFAKLMRGLKKLYNRQIAA 580
              +  ++  L K  N  + A
Sbjct: 534 TVNYTIVIHKLLKERNYGLVA 554



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 205/464 (44%), Gaps = 44/464 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI+ L +  +      L  EM  ++P +    ++  L++   +A   ++ + +L  M
Sbjct: 226 YATLIEGLCEAGRIDEAVELFGEM--DQPDM---HMYAALVKGLCNAERGEEGLLMLRRM 280

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + G  P    +  ++D  C+    KEA ++  EM E+   P +   T+++  +CKEG++
Sbjct: 281 KELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 340

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  VL  MK  G +P++  YN L+ G+   GK+  A  LL +MR  G +P+A +Y +L
Sbjct: 341 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 400

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I+  C    +E A R    ME  G  AD  TY  LI+  CK  + D+   + DS+  RGI
Sbjct: 401 IRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI 460

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            PN +T+  ++    K  + +   + + +M   GC PD   Y+  I   CK+   +E ++
Sbjct: 461 KPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLS 520

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
              EM    + P T ++ +++H                                      
Sbjct: 521 FIGEMLQKDVKPSTVNYTIVIH-------------------------------------K 543

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           LL+ +   +    W  +V+ GC  +V  +T  + +    G + EA +  ++M    V   
Sbjct: 544 LLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVD 603

Query: 560 PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA-ERQITFKMYKR 602
              +  LM G   +     A  I +++  +A+   Q T+ +  R
Sbjct: 604 TMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLR 647



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 186/421 (44%), Gaps = 39/421 (9%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y AL+K L    + G    LM    KE     +T  +  ++      R  K+A E+L E
Sbjct: 256 MYAALVKGLCNAER-GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQE 314

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M + G  P       +++A CK   + +A ++ + M+ R  KP++  + +L+ G+C EGK
Sbjct: 315 MFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 374

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  +L +M+  G  PD V YN L+ G    G +  AF LL+ M   G   +  +Y  
Sbjct: 375 VHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNA 434

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI ALC+  + ++A   F  +E  G + + VT+ +LI+G CKS K D  ++ L+ M+  G
Sbjct: 435 LINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG 494

Query: 379 ILPNQLTYL----HIMLAHEKKEELEECVELM---------------------------- 406
             P+  TY     H+      +E L    E++                            
Sbjct: 495 CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVA 554

Query: 407 ---GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
              GEM   GC PDV  Y   +R  C  G L EA NV  EM    ++  T ++  ++ G 
Sbjct: 555 RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGH 614

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G    A    K+M    + S P   T   LL  L+R + VE    +    V K  EL
Sbjct: 615 ASIGQTDHAVSILKQMT--SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIEL 672

Query: 524 N 524
            
Sbjct: 673 T 673



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/486 (22%), Positives = 196/486 (40%), Gaps = 60/486 (12%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y AL++      K      L+ +MR     P  +T   + +L+R       ++ A  +L
Sbjct: 361 TYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVT---YNLLIRGQCIDGHIESAFRLL 417

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKE 256
             M   G   D++ +  L++ALCK+    +A  LFD +  R  KP+   F SL+ G CK 
Sbjct: 418 RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKS 477

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK   A   L +M  AG  PD   Y++ +    +M    +    + EM +K   P+  +Y
Sbjct: 478 GKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNY 537

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T++I  L +        R + EM  SGC  DVVTYTT +  +C   +++    +L  M +
Sbjct: 538 TIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSK 597

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG---- 432
            G+  + + Y  +M  H    + +  V ++ +M  +  VP+   Y +++R   ++     
Sbjct: 598 NGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVED 657

Query: 433 -------------ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG------------ 467
                        EL +   +++ M+     P + ++  ++ GF   G            
Sbjct: 658 VLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLM 717

Query: 468 -----------------CLIEACEYFK------EMVGRGLLSAPQYGTLKALLNSLLRAQ 504
                            C  ++  Y         M+  G +  PQ  + + LL+ L+   
Sbjct: 718 KEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI--PQLMSYQHLLSGLICEG 775

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
           + + AK+++     K    +   W + I  L   GH   +    + +   +  P   T+A
Sbjct: 776 QTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYA 835

Query: 565 KLMRGL 570
            L   L
Sbjct: 836 MLTEEL 841


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 202/454 (44%), Gaps = 38/454 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI    K     A   L  +M  E  +  T   F  L+  +     V+KA ++  EM
Sbjct: 431 YNSLINGHCKFGDLSAAEFLYTKMINEGLE-PTATTFTTLISGYCKDLQVEKAFKLYREM 489

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            +    P  + F  L+  LC  + + EA+KLFDEM ER  KP+   +  ++ G+CK   +
Sbjct: 490 NEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNM 549

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L  M   G  PD   Y  L+SG    G+++ A + + ++ +K    N   Y+ L
Sbjct: 550 DKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSAL 609

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +   C   ++ EA  A  EM + G   D+V +  LI G  K + + R + +L  M  +G+
Sbjct: 610 LHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGL 669

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ + Y  ++ A+ K+   ++  E +  M    C P+V  Y   +   CK+GE+  A +
Sbjct: 670 RPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGH 729

Query: 440 VWNEMEAASLSP----------------------------------GTDSFVVMVHGFLG 465
           ++ +M  A++SP                                   T ++ +++ GF  
Sbjct: 730 LFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCK 789

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G LIEA +   EM   G+   P   T   ++    R+  V  A ++W  ++ KG E + 
Sbjct: 790 LGRLIEATKVLSEMTENGIF--PDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDS 847

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            A+ + I+    NG + +A     DM+   + P+
Sbjct: 848 VAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPR 881



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 225/497 (45%), Gaps = 37/497 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVI-LMRRFASARMVKKAIEVLDE 199
           Y  L+    ++++F     LM EM +     + TE  V  L+        +  A +++ +
Sbjct: 291 YCTLVLGFCRVQQFDDGICLMNEMVE--LGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVK 348

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP-SLRHFTSLLYGWCKEGK 258
           + ++G  P+ FV+  L++ALCK   + +A  L+  M     P +   ++ L+  +CK G 
Sbjct: 349 LGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGM 408

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           L  A+    +M + G    I  YN+L++G+ + G ++ A  L  +M  +G +P A ++T 
Sbjct: 409 LDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTT 468

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   C+  ++E+A + + EM        V T+T LI G C + ++    ++ D M++R 
Sbjct: 469 LISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERK 528

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           I P ++TY  ++  + K   +++  EL+ +M   G VPD   Y  +I   C  G +  A 
Sbjct: 529 IKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAK 588

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG----------LLSAP 488
           +  +++   +L      +  ++HG+ GQG L EA     EM+ RG          L+   
Sbjct: 589 DFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGA 648

Query: 489 Q--------YGTLKALLNSLLRAQKVEMAK--DVWS-------------CIVTKGCELNV 525
                    +G LK + +  LR   V      D +S              +VT+ C  NV
Sbjct: 649 MKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNV 708

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585
             +T +++ L   G +  A      M+ A++ P   T+   +  L K  N + A ++  +
Sbjct: 709 VTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHE 768

Query: 586 VRKMAAERQITFKMYKR 602
           + K       T+ +  R
Sbjct: 769 MLKGLLANTATYNILIR 785



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 198/433 (45%), Gaps = 49/433 (11%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI  L    +      L +EM  RK KP  +T   + +++  +  A  + KA E+L+
Sbjct: 501 FTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVT---YNVMIEGYCKAHNMDKAFELLE 557

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M   G  PD + +  L+  LC    V  A    D++ ++  K +   +++LL+G+C +G
Sbjct: 558 DMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQG 617

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L EA     +M   G   D+V +  L+ G  +   M   F LLK+M  +G  P++  YT
Sbjct: 618 RLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYT 677

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            +I A  +    +++      M    C  +VVTYT  ++G CK  +IDR   + + M+  
Sbjct: 678 SMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTA 737

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I PN +TY   + +  K+  ++E  +L  EM K G + + + YN++IR  CKLG L EA
Sbjct: 738 NISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGFCKLGRLIEA 796

Query: 438 -----------------------------------VNVWNEMEAASLSPGTDSFVVMVHG 462
                                              V +W+ M    + P + +F ++++G
Sbjct: 797 TKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYG 856

Query: 463 FLGQGCLIEACEYFKEMVGRGL-------LSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
               G L +A E   +M+ RGL       L     G    L++      +V+ A  ++  
Sbjct: 857 CCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHS 916

Query: 516 IVTKGCELNVYAW 528
           ++T+  +L++  W
Sbjct: 917 MLTRAVKLSLEMW 929



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 189/430 (43%), Gaps = 8/430 (1%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           A++  L ++RKF  VW + +E      KP   T    +   R     +   +A E +  M
Sbjct: 188 AILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVI---RSLCELKDFCRAKEKILWM 244

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
                +     +  L+  LCK   V EA ++   +RE+  K  +  + +L+ G+C+  + 
Sbjct: 245 ESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQF 304

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +   ++ +M + GF P     + L+ G  + G +  A++L+ ++ R G  PN   Y  L
Sbjct: 305 DDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNAL 364

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I ALC+ E +++A   +  M       + VTY+ LI  FCK   +D        MI+ GI
Sbjct: 365 INALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGI 424

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
                 Y  ++  H K  +L     L  +M   G  P  + +  +I   CK  ++++A  
Sbjct: 425 RETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFK 484

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           ++ EM    ++P   +F  +++G      + EA + F EMV R +   P   T   ++  
Sbjct: 485 LYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKI--KPTEVTYNVMIEG 542

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
             +A  ++ A ++   ++  G   + Y +   I  L S G V  A  +  D+   ++   
Sbjct: 543 YCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLN 602

Query: 560 PDTFAKLMRG 569
              ++ L+ G
Sbjct: 603 EMCYSALLHG 612



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 206/475 (43%), Gaps = 31/475 (6%)

Query: 118 GNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMR---KFGAVWALMEEMRKEKPQLITT 174
           GNL ++         + +  + V + LI +L   +   +F     L + M        TT
Sbjct: 43  GNLSWKIAFNDPSISSTLKPHHVEQVLINTLHDSKLALRFFNFLGLHKNMNH------TT 96

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA--LCKNSSVK------ 226
             F IL+      ++   A  +L  +   G +P +FVF   L++   CK SS        
Sbjct: 97  TSFAILVHALVQNKLFWPANSLLHTLLLRGSDP-KFVFEKFLESHKQCKFSSTLGFDFLV 155

Query: 227 ----EAAKLFDE-------MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275
               +  ++FD        +     P +R  +++L G  +  K +    V  +  +AG +
Sbjct: 156 HSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVK 215

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           PD    + ++    ++     A E +  M     D +  +Y VLI  LC+   + EA   
Sbjct: 216 PDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEV 275

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
              +   G + DVVTY TL+ GFC+ ++ D    +++ M++ G +P +     ++    K
Sbjct: 276 RKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRK 335

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
           K  ++   +L+ ++ + G +P++  YN +I   CK  +L +A  ++  M + +L     +
Sbjct: 336 KGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVT 395

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           + +++  F  +G L  A  YF  M+  G+          +L+N   +   +  A+ +++ 
Sbjct: 396 YSILIDSFCKRGMLDVAESYFGRMIEDGIRETIY--PYNSLINGHCKFGDLSAAEFLYTK 453

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           ++ +G E     +T  I     +  V++A     +M + ++ P   TF  L+ GL
Sbjct: 454 MINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGL 508



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 14/251 (5%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y ++I + SK   F      ++ M  EK  P ++T   F   M        + +A  + 
Sbjct: 675 IYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAF---MNGLCKVGEIDRAGHLF 731

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
           ++M      P+   +GC LD+L K  ++KEA  L  EM +    +   +  L+ G+CK G
Sbjct: 732 EKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLG 791

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L+EA  VL +M + G  PD + Y+ ++  + + G +  A EL   M RKG +P++ ++ 
Sbjct: 792 RLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFN 851

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEA---------DVVTYTTLISGFCKSRKIDRCY 368
           +LI   C    +++A     +M   G +          D+     L+ G C + ++D   
Sbjct: 852 LLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTAL 911

Query: 369 EILDSMIQRGI 379
            +  SM+ R +
Sbjct: 912 RLYHSMLTRAV 922


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 168/326 (51%), Gaps = 20/326 (6%)

Query: 132 PNYVHSYDVYRALIKS--LSKMRKFGAVWALMEEMRKE--KPQLITTEVFV---ILMRRF 184
           PN V     Y ALI    +   R+ G  +AL+ EMR+   +P L T    V        F
Sbjct: 71  PNEV----TYTALIHGYFVRGQREMG--FALVGEMRRGGVEPNLYTYNCLVGEWCRTGEF 124

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSL 243
            SAR++       DEMP  G   +   +  L+  LC++  +K+AA+LF+ MR E   PS+
Sbjct: 125 KSARLL------FDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSM 178

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F  L+ G+ K GK+  A +   QMK AG +P +V YN L+ G+ +   +  A     +
Sbjct: 179 VTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSD 238

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M+ +   P   +YT+LI A  +  +M+ A     EME++G E DV +Y  L+   C   K
Sbjct: 239 MKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGK 298

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           +    ++  SM  +G+ PN + Y  ++  + ++    + + L+ EMRK G +P+V++Y +
Sbjct: 299 MMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCL 358

Query: 424 VIRLACKLGELKEAVNVWNEMEAASL 449
            IRL C  G+ +EA  +  +ME A L
Sbjct: 359 TIRLLCNEGKCQEAEALIGDMEDAGL 384



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 151/297 (50%), Gaps = 1/297 (0%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           V +A  V D MP+ G  P+E  +  L+         +    L  EMR    +P+L  +  
Sbjct: 54  VAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNC 113

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+  WC+ G+   A+ +  +M   G   ++V YN L++G  + GK+ DA +L + MRR+G
Sbjct: 114 LVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREG 173

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             P+  ++ +LI    +  KM  A   F +M+ +G +  VVTY  LI GFC++R I    
Sbjct: 174 IHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAI 233

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
                M +R + P ++TY  ++ A  K+ E++   E++ EM K G   DV +Y V++   
Sbjct: 234 RAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHAL 293

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
           C  G++  A  ++  M++  + P    + +M++G+  +G   +A     EM   GL+
Sbjct: 294 CMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLI 350



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 159/323 (49%), Gaps = 4/323 (1%)

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T+L++G C+ G + EA+ V   M   G  P+ V Y  L+ GY   G+    F L+ EMRR
Sbjct: 42  TALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRR 101

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G +PN  +Y  L+   CR  + + A   F EM   G   +VV+Y  LI+G C+  K+  
Sbjct: 102 GGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKD 161

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++ ++M + GI P+ +T+  ++  + K  ++   +    +M+  G  P V  YN +I 
Sbjct: 162 AAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIG 221

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-L 485
             C+  ++  A+  +++M+   L+P   ++ +++  F  +  +  A E   EM   GL +
Sbjct: 222 GFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEV 281

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545
               YG    LL++L    K+  A+ ++  + +KG + N   + + I+     G   +A 
Sbjct: 282 DVQSYGV---LLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKAL 338

Query: 546 SYCLDMMDADVMPQPDTFAKLMR 568
              ++M  + ++P   ++   +R
Sbjct: 339 RLIMEMRKSGLIPNVASYCLTIR 361



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 153/336 (45%), Gaps = 3/336 (0%)

Query: 254 CKEGKLVEAKYVLVQMKDAGFEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
           C   ++  A  VL +   +G    D+     L+ G  Q G + +A  +   M R G  PN
Sbjct: 13  CAAAEVRSALAVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPN 72

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +YT LI       + E       EM R G E ++ TY  L+  +C++ +      + D
Sbjct: 73  EVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFD 132

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M  +G++ N ++Y  ++    +  +L++  +L   MR+ G  P +  +N++I    K G
Sbjct: 133 EMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAG 192

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
           ++  A++ +N+M+AA L P   ++  ++ GF     +  A   F +M  R L  AP   T
Sbjct: 193 KMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRL--APTKVT 250

Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552
              L+ +  +  +++ A ++ S +   G E++V ++ + +H+L   G +  A      M 
Sbjct: 251 YTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMD 310

Query: 553 DADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
              V P    +  ++ G  +  +   A  +  ++RK
Sbjct: 311 SKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRK 346



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 41/243 (16%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI  L +  K      L E MR+E   P ++T   F +L+  +  A  +  A+   +
Sbjct: 146 YNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVT---FNLLIDGYGKAGKMSNALHFFN 202

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS--------------- 242
           +M   G +P    +  L+   C+   +  A + F +M+ER   P+               
Sbjct: 203 QMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKEN 262

Query: 243 --------------------LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282
                               ++ +  LL+  C EGK++ A+ +   M   G +P+ V+Y+
Sbjct: 263 EMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYD 322

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
            ++ GY + G    A  L+ EMR+ G  PN  SY + I+ LC   K +EA     +ME +
Sbjct: 323 MMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDA 382

Query: 343 GCE 345
           G +
Sbjct: 383 GLQ 385



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 11/223 (4%)

Query: 110 VINRCGDAGNLGYRYYMW-----ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
           +I+  G AG +    + +     A  QP+ V     Y  LI    + R          +M
Sbjct: 184 LIDGYGKAGKMSNALHFFNQMKAAGLQPSVV----TYNELIGGFCRARDIAHAIRAFSDM 239

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
            KE+    T   + IL+  FA    + +A E+L EM K G E D   +G LL ALC    
Sbjct: 240 -KERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGK 298

Query: 225 VKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283
           +  A KLF  M  +  KP+   +  ++YG+ +EG   +A  ++++M+ +G  P++  Y  
Sbjct: 299 MMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCL 358

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +      GK  +A  L+ +M   G   + +   VL  A  R+
Sbjct: 359 TIRLLCNEGKCQEAEALIGDMEDAGLQTSESICRVLFDAKARL 401


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 211/457 (46%), Gaps = 43/457 (9%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           Y      +  LIK L    K      L++ M +   +P ++T    V  + R     +  
Sbjct: 154 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSL-- 211

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLL 250
            A+++L +M +   + D F +  ++D+LC++  +  A  LF EM  +  K S+  + SL+
Sbjct: 212 -ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G CK GK  +   +L  M      P+++ +N LL  + + GK+ +A EL KEM  +G  
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  L+   C   ++ EAN     M R+ C  D+VT+T+LI G+C  +++D   ++
Sbjct: 331 PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKV 390

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             ++ +RG++ N +TY  ++    +  +++   EL  EM   G +PDV  Y +++   C 
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+L++A+ ++ +++ + +  G   +  ++ G    G                       
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG----------------------- 487

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
                         KVE A +++  +  KG + NV  +T+ I  L   G + EA      
Sbjct: 488 --------------KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRK 533

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
           M +    P   T+  L+R   +  +   +A++ E+++
Sbjct: 534 MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 198/390 (50%), Gaps = 10/390 (2%)

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD---EMPKYGCEPDEFVFGCL 215
           AL +EM + +P        V   R F++    K+   VLD   ++   G   + +    +
Sbjct: 74  ALFQEMIRSRP----LPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 216 LDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
           ++  C+      A  +  + M+  ++P    F +L+ G   EGK+ EA  ++ +M + G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334
           +PD+V YN++++G  + G  + A +LL++M  +    +  +Y+ +I +LCR   ++ A  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394
            F EME  G ++ VVTY +L+ G CK+ K +    +L  M+ R I+PN +T+  ++    
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
           K+ +L+E  EL  EM   G  P++  YN ++   C    L EA N+ + M     SP   
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           +F  ++ G+     + +  + F+ +  RGL++     T   L+    ++ K+++A++++ 
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV--TYSILVQGFCQSGKIKLAEELFQ 427

Query: 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
            +V+ G   +V  + I +  L  NG +++A
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKA 457



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 167/331 (50%), Gaps = 6/331 (1%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAI 194
           S   Y +L++ L K  K+     L+++M  R+  P +IT   F +L+  F     +++A 
Sbjct: 262 SVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT---FNVLLDVFVKEGKLQEAN 318

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGW 253
           E+  EM   G  P+   +  L+D  C  + + EA  + D M R +  P +  FTSL+ G+
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
           C   ++ +   V   +   G   + V Y+ L+ G+ Q GK+  A EL +EM   G  P+ 
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
            +Y +L+  LC   K+E+A   F ++++S  +  +V YTT+I G CK  K++  + +  S
Sbjct: 439 MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS 498

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           +  +G+ PN +TY  ++    KK  L E   L+ +M + G  P+   YN +IR   + G+
Sbjct: 499 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGD 558

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L  +  +  EM++   S    S  +++   L
Sbjct: 559 LTASAKLIEEMKSCGFSADASSIKMVIDMLL 589



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 176/368 (47%), Gaps = 8/368 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  +I SL +     A  +L +EM  +  K  ++T   +  L+R    A        +L 
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT---YNSLVRGLCKAGKWNDGALLLK 287

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           +M      P+   F  LLD   K   ++EA +L+ EM  R   P++  + +L+ G+C + 
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L EA  +L  M      PDIV + +L+ GY  + ++ D  ++ + + ++G   NA +Y+
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +L+Q  C+  K++ A   F EM   G   DV+TY  L+ G C + K+++  EI + + + 
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            +    + Y  I+    K  ++E+   L   +   G  P+V  Y V+I   CK G L EA
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 527

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  +ME    +P   ++  ++   L  G L  + +  +EM   G   +    ++K ++
Sbjct: 528 NILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF--SADASSIKMVI 585

Query: 498 NSLLRAQK 505
           + LL A K
Sbjct: 586 DMLLSAMK 593



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 3/286 (1%)

Query: 284 LLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           L SG   + K  DA  L +EM R    P+   ++    A+ R ++         ++E +G
Sbjct: 60  LRSGIVDIKK-DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNG 118

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              ++ T   +I+ FC+  K    Y +L  +++ G  P+  T+  ++     + ++ E V
Sbjct: 119 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAV 178

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            L+  M + GC PDV  YN ++   C+ G+   A+++  +ME  ++     ++  ++   
Sbjct: 179 VLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              GC+  A   FKEM  +G+ S+    T  +L+  L +A K      +   +V++    
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVV--TYNSLVRGLCKAGKWNDGALLLKDMVSREIVP 296

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           NV  + + +      G ++EA     +M+   + P   T+  LM G
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 342


>gi|297740791|emb|CBI30973.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 197/428 (46%), Gaps = 44/428 (10%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F ILM+       +  A ++L  M   G  P+  ++  ++ ALCKN  V  A  L +EM 
Sbjct: 84  FGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEMV 143

Query: 237 ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV---------------- 280
           E   PS   F  L+  +C+E  LV+A  +L +    GF PD+V                 
Sbjct: 144 E---PSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTE 200

Query: 281 -------------------YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
                              YN L+ G+  +GK      +LK+M  KGC PN ++Y +L  
Sbjct: 201 GVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILAS 260

Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ-RGIL 380
             C    ++ A   F +M+  G   + +TY TLI G C   +++  ++IL+ M + RG  
Sbjct: 261 GYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGA 320

Query: 381 PNQLT-YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
             +++ Y  I+    KK + EE +E + +M K+   P   + ++ I   C  G + +A  
Sbjct: 321 GGRISPYNSIIYGLYKKNQFEEALEFLTKMEKL--FPRAVDRSLRILGFCNEGSIGDAKR 378

Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
           V+++M      P    +V ++HGF   G + EA E   EMV  G    P   T  AL+++
Sbjct: 379 VYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYF--PTAPTFNALISA 436

Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
                KV  A  +   +V +GC  ++ +++  + +L + G  ++A    L M++ D++P 
Sbjct: 437 FCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPD 496

Query: 560 PDTFAKLM 567
             T+  ++
Sbjct: 497 YSTWNSML 504



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 38/310 (12%)

Query: 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234
            +FV ++R    ARMV++ I+VLD + K+G  P   +F  +LD L K           D 
Sbjct: 12  SIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKED--------IDL 63

Query: 235 MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294
            RE ++                           +M   G   D   +  L+ G     ++
Sbjct: 64  AREFYRK--------------------------KMMMNGVSGDDYTFGILMKGLCLTNRI 97

Query: 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
            DAF+LL+ M+ +G  PN   Y  +I ALC+  K+  A     EM     E   VT+  L
Sbjct: 98  GDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEM----VEPSDVTFNVL 153

Query: 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414
           IS +C+   + +   +L+     G +P+ +T   ++    K   + E VE++  +  +G 
Sbjct: 154 ISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGG 213

Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
           V DV  YN +I+  C LG+ K    V  +ME     P  D++ ++  G+   G L  A +
Sbjct: 214 VVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAID 273

Query: 475 YFKEMVGRGL 484
            F +M   G+
Sbjct: 274 LFNDMKTDGI 283



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 188/481 (39%), Gaps = 80/481 (16%)

Query: 101 VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWAL 160
           +L  GL   + NR GDA  L  +      K PN V    +Y  +I +L K  K G   +L
Sbjct: 86  ILMKGLC--LTNRIGDAFKL-LQVMKSRGKTPNTV----IYNTMIHALCKNGKVGRARSL 138

Query: 161 MEEMRKEKPQLITTEVF--------------VILMRRFA------------------SAR 188
           M EM +  P  +T  V               V+L + F+                   A 
Sbjct: 139 MNEMVE--PSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAG 196

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFT 247
            V + +EVL+ +   G   D   +  L+   C     K   ++  +M  +   P++  + 
Sbjct: 197 RVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYN 256

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR-- 305
            L  G+C  G L  A  +   MK  G   + + Y+ L+ G    G+M D F++L+ M   
Sbjct: 257 ILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEES 316

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEA--------------------------------- 332
           R G     + Y  +I  L +  + EEA                                 
Sbjct: 317 RGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDA 376

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
            R + +M + G    V+ Y  LI GFC+   +   +E+++ M+  G  P   T+  ++ A
Sbjct: 377 KRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISA 436

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
              + ++   ++LM +M   GC+PD+ +Y+ ++   C  G+ ++AV ++ +M    + P 
Sbjct: 437 FCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPD 496

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             ++  M+     +   +E    F     R  L    Y   KA  N L       M K +
Sbjct: 497 YSTWNSMLLCLTQETVWLEGDNLFHLTAYRERLC---YKKKKAGFNVLAIYHMSTMRKKI 553

Query: 513 W 513
           W
Sbjct: 554 W 554


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 201/429 (46%), Gaps = 13/429 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           YVH    +  ++  L    KF A   L+  M+ E   +++ ++ + + R +        +
Sbjct: 47  YVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENC-VVSEDILLSICRGYGRVHRPFDS 105

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
           + V  +M  + C+P +  +  +L  L + + +  A K +  MRE    P++     L+  
Sbjct: 106 LRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKA 165

Query: 253 WCKEGKLVEAKY-VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            C+    V+A   + ++M   G +PD   Y  L+SG  + G++ +A +L  EM  K C P
Sbjct: 166 LCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAP 225

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
              +YT LI  LC  + ++EA R   EM+  G E +V TY++L+ G CK  +  +  E+ 
Sbjct: 226 TVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           + M+ RG  PN +TY  ++    K+++++E VEL+  M   G  PD   Y  VI   C +
Sbjct: 286 EMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAI 345

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVV-------MVHGFLGQGCLIEACEYFKEMVGRGL 484
            + +EA N  +EM    ++P   ++ +       +V G L       A   +  M  RG+
Sbjct: 346 SKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRG-LCANYPSRAFTLYLSMRSRGI 404

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             + +  TL++L+  L +  + + A  +   IVT GC  +   W + I        V EA
Sbjct: 405 --SVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEA 462

Query: 545 CSYCLDMMD 553
               L  +D
Sbjct: 463 SDTLLRDLD 471



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 3/276 (1%)

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           + +S+  ++  L    K + A    V M+   C        ++  G+ +  +      + 
Sbjct: 50  DQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVF 109

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M      P+Q  Y+ ++    ++ +L    +    MR+IG  P V++ NV+I+  C+ 
Sbjct: 110 HKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRN 169

Query: 432 -GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G +   + ++ EM      P + ++  ++ G    G + EA + F EMV +    AP  
Sbjct: 170 DGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--CAPTV 227

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
            T  +L+N L  ++ V+ A      + +KG E NV+ ++  +  L  +G   +A      
Sbjct: 228 VTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEM 287

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           MM     P   T+  L+ GL K    Q A E+ +++
Sbjct: 288 MMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRM 323


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 190/382 (49%), Gaps = 4/382 (1%)

Query: 191 KKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
           ++A++++  M K G  C PD   F  ++    K   V +A  L +EM ++  +P +  + 
Sbjct: 244 QEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYN 303

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           S++   CK   + +A+ VL QM D G EPD + Y  ++ GY+  G   ++ ++ ++M  K
Sbjct: 304 SIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSK 363

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P   ++   + +LC+  + ++A   F  M   G   D+V+Y+ L+ G+    +    
Sbjct: 364 GLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADM 423

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             +  SM  +GI+ N   +  ++ AH K+  ++E + +  EM+  G  PDV  Y+ +I  
Sbjct: 424 NNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISA 483

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++G L +A+  +++M +  L P T  +  ++HGF   G L++A E   EM+ +G +  
Sbjct: 484 FCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG-IPR 542

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P      ++++SL    +V  A DV++ ++  G    +  +   I      G +++A   
Sbjct: 543 PNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGV 602

Query: 548 CLDMMDADVMPQPDTFAKLMRG 569
              M+   + P   T+  L+ G
Sbjct: 603 LDAMVSVGIEPDVVTYNTLVSG 624



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 208/471 (44%), Gaps = 46/471 (9%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE----KPQLITTEVFVILMRRFASARMVKKAIEV 196
           Y  +IKSL    +      +++ M KE     P +++   F  ++  F     V KA  +
Sbjct: 230 YNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVS---FNTVIHGFFKQGEVSKACNL 286

Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSV------------------------------- 225
           ++EM + G EPD   +  ++DALCK  ++                               
Sbjct: 287 INEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSC 346

Query: 226 ----KEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
               KE+AK+F +M  +   P +  F S +   CK G+  +A+ +   M   G  PD+V 
Sbjct: 347 SGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVS 406

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           Y+ LL GYA  G+  D   L   M  KG   N + + +LI A  +   M+EA   F EM+
Sbjct: 407 YSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQ 466

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G   DVVTY+TLIS FC+  ++    E    MI  G+ PN + Y  ++       +L 
Sbjct: 467 GQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLV 526

Query: 401 ECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459
           +  EL+ EM   G   P++  ++ +I   C  G + +A +V+N +      P   +F  +
Sbjct: 527 KAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSL 586

Query: 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
           + G+   G + +A      MV  G+   P   T   L++   ++ K++    ++  ++ K
Sbjct: 587 IDGYCLVGKMEKAFGVLDAMVSVGI--EPDVVTYNTLVSGYCKSGKIDDGLILFREMLHK 644

Query: 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             +     ++I +  LF  G    A     +M+D+      DT+  L++GL
Sbjct: 645 KVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGL 695



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/514 (23%), Positives = 223/514 (43%), Gaps = 83/514 (16%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASAR 188
           +P+ V     Y +++ +L K R       ++ +M  +  +P  +T   +  ++  ++ + 
Sbjct: 296 EPDVV----TYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLT---YTAIIHGYSCSG 348

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFT 247
             K++ ++  +M   G  P    F   + +LCK+   K+A ++F  M  +   P L  ++
Sbjct: 349 HWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYS 408

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            LL+G+  EG+  +   +   M D G   +   +N L+S +A+ G M +A  +  EM+ +
Sbjct: 409 ILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQ 468

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  P+  +Y+ LI A CRM ++ +A   F +M   G E + V Y +LI GFC    + + 
Sbjct: 469 GVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKA 528

Query: 368 YEILDSMIQRGIL-PNQLTY---LH-------IMLAHEKKE------------------- 397
            E++  M+ +GI  PN + +   +H       +M AH+                      
Sbjct: 529 KELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLID 588

Query: 398 ------ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
                 ++E+   ++  M  +G  PDV  YN ++   CK G++ + + ++ EM    + P
Sbjct: 589 GYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKP 648

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL-------------- 497
            T ++ +++ G    G    A + F EM+  G  +A    T K LL              
Sbjct: 649 TTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSG--TAVDIDTYKILLKGLCRNDLTDEAIT 706

Query: 498 ---------------------NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
                                N+L + ++ E A D+++ I T G   NV  + + IH+L 
Sbjct: 707 LFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLL 766

Query: 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
             G V+EA +    M  +   P       ++R L
Sbjct: 767 KEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 800



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 218/473 (46%), Gaps = 25/473 (5%)

Query: 71  SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
           S D E+IF+ +      +P L   + +S ++L    TE    R  D  NL   ++  A K
Sbjct: 385 SKDAEEIFQYMTT-KGHMPDL---VSYS-ILLHGYATE---GRFADMNNL---FHSMADK 433

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
               V +   +  LI + +K         +  EM+ +  +P ++T   +  L+  F    
Sbjct: 434 --GIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVT---YSTLISAFCRMG 488

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHF 246
            +  A+E   +M   G EP+  V+  L+   C +  + +A +L  EM  +   +P++  F
Sbjct: 489 RLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFF 548

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           +S+++  C EG++++A  V   +   G  P IV +N+L+ GY  +GKM  AF +L  M  
Sbjct: 549 SSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVS 608

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G +P+  +Y  L+   C+  K+++    F EM     +   VTY+ ++ G   + +   
Sbjct: 609 VGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSA 668

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
             ++   MI  G   +  TY  ++    + +  +E + L  ++  + C  D++  N VI 
Sbjct: 669 AKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVIN 728

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
              K+   +EA +++  +  + L P   ++ VM+H  L +G + EA   F  M   G   
Sbjct: 729 ALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSG--C 786

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI-WIHSLFSN 538
           AP    L  ++  LL  QK ++ K  +      G  +++ A T   + SLFS+
Sbjct: 787 APSSRLLNDIIRMLL--QKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSS 837



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 165/398 (41%), Gaps = 20/398 (5%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDAL--------CKNSSVKEAAKLFDEM-RERFKPSL 243
           A  + DE+ + G           L AL        C N      A LF+ + RE   P +
Sbjct: 93  AHHLFDELLRQGTPVHNPALNGFLAALARAPDSVSCSNGPALVLA-LFNRICREEAGPRV 151

Query: 244 RHFTSLLYGW-----CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
              +   YG      C+  +         ++  AG     +  N  L       +  +A 
Sbjct: 152 APLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAV 211

Query: 299 E-LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG--CEADVVTYTTLI 355
           + LL  M   GC PNA SY  +I++LC   + +EA      M + G  C  DVV++ T+I
Sbjct: 212 DVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVI 271

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            GF K  ++ +   +++ M+Q+G+ P+ +TY  I+ A  K   +++   ++ +M   G  
Sbjct: 272 HGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVE 331

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
           PD   Y  +I      G  KE+  ++ +M +  L PG  +F   +      G   +A E 
Sbjct: 332 PDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEI 391

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F+ M  +G +  P   +   LL+      +     +++  +  KG   N + + I I + 
Sbjct: 392 FQYMTTKGHM--PDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449

Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
              G + EA     +M    V P   T++ L+    ++
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRM 487



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 139/304 (45%), Gaps = 21/304 (6%)

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRM-EKMEEANRAFVEM--------ERSG--- 343
           DA  L  E+ R+G   +  +    + AL R  + +  +N   + +        E +G   
Sbjct: 92  DAHHLFDELLRQGTPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRICREEAGPRV 151

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL---TYLHIMLAHEKKEELE 400
               V TY  L+   C++R+ D        +++ G+    +   T+L   L H K+ + E
Sbjct: 152 APLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKC-LCHAKRTD-E 209

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM--EAASLSPGTDSFVV 458
               L+  M  +GCVP+  +YN VI+  C     +EA+++   M  E    SP   SF  
Sbjct: 210 AVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNT 269

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++HGF  QG + +AC    EMV +G+   P   T  +++++L +A+ ++ A+ V   +V 
Sbjct: 270 VIHGFFKQGEVSKACNLINEMVQKGV--EPDVVTYNSIVDALCKARAMDKAELVLRQMVD 327

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578
           KG E +   +T  IH    +GH KE+      M    ++P   TF   M  L K    + 
Sbjct: 328 KGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKD 387

Query: 579 AAEI 582
           A EI
Sbjct: 388 AEEI 391



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 10/236 (4%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +P+ V     Y  L+    K  K      L  EM  +K +  T    ++L   F + R  
Sbjct: 612 EPDVV----TYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGR-T 666

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE---MRERFKPSLRHFT 247
             A ++  EM   G   D   +  LL  LC+N    EA  LF +   M  +F  ++    
Sbjct: 667 SAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITI--LN 724

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           +++    K  +  EA  +   +  +G  P++  Y  ++    + G + +A  +   M + 
Sbjct: 725 TVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKS 784

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           GC P++     +I+ L +   + +A     +++ +    +  T + L+S F    K
Sbjct: 785 GCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGK 840


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 202/474 (42%), Gaps = 44/474 (9%)

Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAI 194
           S   Y +L+  L K R   +V  L++EM     KP + T   F I +R    A  + +A 
Sbjct: 224 SLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYT---FTICIRVLGRAGKINEAY 280

Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGW 253
           E+L  M   GC PD   +  L+DALC    +  A ++F +M+  R KP    + +LL  +
Sbjct: 281 EILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRF 340

Query: 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
                L        +M+  G  PD+V +  L+    + G   +AF  L  MR +G  PN 
Sbjct: 341 SDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNL 400

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++Y  LI  L R+ ++++A   F  ME  G +    TY   I  + KS       E  + 
Sbjct: 401 HTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 460

Query: 374 MIQRGILPN-----------------------------------QLTYLHIMLAHEKKEE 398
           M  +GI PN                                    +TY  +M  + K  E
Sbjct: 461 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 520

Query: 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458
           ++E ++L+ EM +  C PDV   N +I    K   + EA  ++  M+   L P   ++  
Sbjct: 521 IDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNT 580

Query: 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518
           ++ G    G + EA E F+ MV +G    P   T   L + L +  +V +A  +   ++ 
Sbjct: 581 LLAGLGKNGKIQEAIELFEGMVQKG--CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMD 638

Query: 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            GC  +V+ +   I  L  NG VKEA  +    M   V P   T   L+ G+ K
Sbjct: 639 MGCVPDVFTYNTIIFGLVKNGQVKEAMCF-FHQMKKLVYPDFVTLCTLLPGVVK 691



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 188/367 (51%), Gaps = 8/367 (2%)

Query: 110 VINRCGDAGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168
           +++R  D  +L      W+  + + +V     +  L+ +L K   FG  +A ++ MR + 
Sbjct: 336 LLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQG 395

Query: 169 --PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226
             P L T    +  + R      +  A+E+ D M   G +P  + +   +D   K+    
Sbjct: 396 ILPNLHTYNTLICGLLR---VHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSV 452

Query: 227 EAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285
            A + F++M+ +   P++    + LY   K G+  EAK +   +KD G  PD V YN ++
Sbjct: 453 SALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 512

Query: 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345
             Y+++G++ +A +LL EM    C+P+      LI  L + ++++EA + F+ M+    +
Sbjct: 513 KCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 572

Query: 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405
             VVTY TL++G  K+ KI    E+ + M+Q+G  PN +T+  +     K +E+   +++
Sbjct: 573 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKM 632

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           + +M  +GCVPDV  YN +I    K G++KEA+  +++M+   + P   +   ++ G + 
Sbjct: 633 LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVK 691

Query: 466 QGCLIEA 472
            G + +A
Sbjct: 692 AGLIEDA 698



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 124/516 (24%), Positives = 238/516 (46%), Gaps = 46/516 (8%)

Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
           + Y+   +   N VH+ +    ++++L    K+ +   V+ LM++   ++     T  ++
Sbjct: 104 FSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKR----DTNTYL 159

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RE 237
            + +  +    +++A   L +M ++G   + + +  L+  L K+    EA +++  M  +
Sbjct: 160 TIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILD 219

Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
            F+PSL+ ++SL+ G  K   +     +L +M+  G +P++  +   +    + GK+ +A
Sbjct: 220 GFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 279

Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
           +E+LK M  +GC P+  +YTVLI ALC   K++ A   F +M+    + D VTY TL+  
Sbjct: 280 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDR 339

Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD 417
           F  +R +D   +    M + G +P+ +T+  ++ A  K     E    +  MR  G +P+
Sbjct: 340 FSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPN 399

Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
           +  YN +I    ++  L +A+ +++ ME+  + P   +++V +  +   G  + A E F+
Sbjct: 400 LHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 459

Query: 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW------------------------ 513
           +M  +G+  AP      A L SL +A +   AK ++                        
Sbjct: 460 KMKTKGI--APNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 517

Query: 514 -----------SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
                      S +V   CE +V      I++L+    V EA    + M +  + P   T
Sbjct: 518 VGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 577

Query: 563 FAKLMRGLKKLYNRQIAAEITEK-VRKMAAERQITF 597
           +  L+ GL K    Q A E+ E  V+K      ITF
Sbjct: 578 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITF 613



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 144/281 (51%), Gaps = 3/281 (1%)

Query: 179  ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF-DEMRE 237
             L+  +  +  + +  E+  EM  + CEP+      ++  L K  +V +A  L+ D M +
Sbjct: 827  FLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSD 886

Query: 238  R-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
            R F P+   +  L+ G  K G+L EAK +   M D G  P+  +YN L++G+ + G+   
Sbjct: 887  RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADA 946

Query: 297  AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356
            A  L K M ++G  P+  +Y+VL+  LC + +++E    F E++ SG   DVV Y  +I+
Sbjct: 947  ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIIN 1006

Query: 357  GFCKSRKIDRCYEILDSMIQ-RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G  K  +++    + + M + RGI P+  TY  ++L       +EE  ++  E+++ G  
Sbjct: 1007 GLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLE 1066

Query: 416  PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            P+V  +N +IR     G+ + A  V+  M     SP T ++
Sbjct: 1067 PNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 166/351 (47%), Gaps = 8/351 (2%)

Query: 221  KNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKEGKLVE-AKYVLVQMKDAGFEPD 277
            K+++   A  LF++  +    +P L  + +LL G   E  ++E A+ V +Q+K+ G  PD
Sbjct: 763  KHNNASGARMLFEKFTKDLGVQPKLPTY-NLLIGGLLEADMIEIAQDVFLQVKNTGCIPD 821

Query: 278  IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
            +  YN LL  Y + GK+ + FE+ KEM    C+PN  ++ ++I  L +   +++A   + 
Sbjct: 822  VATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYY 881

Query: 338  E-MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
            + M          TY  LI G  KS ++    ++ + M   G  PN   Y  ++    K 
Sbjct: 882  DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKA 941

Query: 397  EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
             E +    L   M K G  PD+  Y+V++   C +G + E ++ + E++ + L+P    +
Sbjct: 942  GEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCY 1001

Query: 457  VVMVHGFLGQGCLIEACEYFKEM-VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
             ++++G      L EA   F EM   RG+   P   T  +L+ +L  A  VE A  +++ 
Sbjct: 1002 NLIINGLGKFHRLEEALVLFNEMKKSRGI--TPDLYTYNSLILNLGIAGMVEEAGKIYNE 1059

Query: 516  IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
            I   G E NV+ +   I     +G  + A +    M+     P   T+ +L
Sbjct: 1060 IQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 203/467 (43%), Gaps = 16/467 (3%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
            Y  L+  L K  K      L E M ++   P  IT   F  L         V  A+++L 
Sbjct: 578  YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT---FNTLFDCLCKNDEVTLALKMLF 634

Query: 199  EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258
            +M   GC PD F +  ++  L KN  VKEA   F +M++   P      +LL G  K G 
Sbjct: 635  KMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKAG- 693

Query: 259  LVEAKYVLVQ--MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
            L+E  Y ++   +     +P  + + +L+        + +A    + +   G   + +S 
Sbjct: 694  LIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSI 753

Query: 317  TV-LIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
             V +I+   +      A   F +  +  G +  + TY  LI G  ++  I+   ++   +
Sbjct: 754  LVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQV 813

Query: 375  IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
               G +P+  TY  ++ A+ K  +++E  E+  EM    C P+   +N+VI    K G +
Sbjct: 814  KNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNV 873

Query: 435  KEAVNVWNE-MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
             +A++++ + M     SP   ++  ++ G    G L EA + F+ M   G    P     
Sbjct: 874  DDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYG--CRPNCAIY 931

Query: 494  KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
              L+N   +A + + A  ++  +V +G   ++  +++ +  L   G V E   Y  ++ +
Sbjct: 932  NILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKE 991

Query: 554  ADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600
            + + P    +  ++ GL K +  + A  +  +++K    R IT  +Y
Sbjct: 992  SGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKK---SRGITPDLY 1035


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 212/466 (45%), Gaps = 42/466 (9%)

Query: 144 LIKSLSKMRKFGAVWALMEEMRKEK-PQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           ++ SL    K     +++++M+  + P  +T   +  ++  +      K A+ +LD+M K
Sbjct: 236 VLNSLCTQGKLSKAESMLQKMKNCRLPNAVT---YNTILNWYVKKGRCKSALRILDDMEK 292

Query: 203 YGCEPDEFVFGCLLDALCK-----------------------------------NSSVKE 227
            G E D + +  ++D LCK                                      +  
Sbjct: 293 NGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINL 352

Query: 228 AAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           A  +F++M R+  KPS+  +T+L+ G+C+ G+  EA+ VL +M+  G  P  + Y+ LL+
Sbjct: 353 AIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLN 412

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
           GY +  K+  A +L+K +R +    N   YT+LI   C++ ++ +A +    M   G + 
Sbjct: 413 GYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDP 472

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
           DV+TY+ LI+G CK   I    EIL  M + G+LPN + Y  ++    K    +E ++  
Sbjct: 473 DVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYF 532

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            ++ + G V +   +N ++    + G + EA      M    +S    SF  ++  +  +
Sbjct: 533 VDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQR 592

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
           G ++EA   +  MV  G    P   T  +LL  L +   +  AK+    ++ K C ++  
Sbjct: 593 GNVLEAFSVYDNMVRHGW--PPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEK 650

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
                +  +  +G + EA   C  M+  +++P   T+  L+ G  K
Sbjct: 651 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCK 696



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 206/455 (45%), Gaps = 43/455 (9%)

Query: 156 AVWALMEEMRKE-KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           A++   + +R+  KP + T   +  L+  +       +A  VL EM   G  P E  +  
Sbjct: 353 AIYIFNQMLRQSLKPSVAT---YTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSA 409

Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LL+  CK+S +  A  L   +R R    +   +T L+ G+C+ G++ +AK +L  M   G
Sbjct: 410 LLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADG 469

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
            +PD++ Y+ L++G  +MG + +  E+L  M++ G  PN   YT L+   C+    +EA 
Sbjct: 470 IDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEAL 529

Query: 334 RAFVEMERSGCEA-----------------------------------DVVTYTTLISGF 358
           + FV++ RSG  A                                   DV ++  +I  +
Sbjct: 530 KYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSY 589

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+   +   + + D+M++ G  P+  TY  ++    +   L +  E M  + +  C  D 
Sbjct: 590 CQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDE 649

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
              N ++   CK G L EA+++  +M   ++ P T ++ +++ GF  +G ++ A    + 
Sbjct: 650 KTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQM 709

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIWIHSLFS 537
           M+ +GL+  P       LLN L+   +V+ A  ++  I+ K G   +  A+   ++    
Sbjct: 710 MLEKGLV--PDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLK 767

Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
            G + E      +M + +V P   ++  LM G  K
Sbjct: 768 GGQINEIERLMRNMHENEVYPSSASYNILMHGYIK 802



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 180/388 (46%), Gaps = 20/388 (5%)

Query: 190  VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
            + +A+++ ++M      PD + +  LLD  CK   V  A  L   M E+   P    +T 
Sbjct: 665  LDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTC 724

Query: 249  LLYGWCKEGKLVEAKYVLVQMK-DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            LL G   EG++  A Y+  ++    G   D + YN++++GY + G++ +   L++ M   
Sbjct: 725  LLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHEN 784

Query: 308  GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
               P++ SY +L+    +  ++      + +M + G + D VTY  LI G C+   I+  
Sbjct: 785  EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIA 844

Query: 368  YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG----------------EMRK 411
             + L+ M+  G+ P+ L +  ++ A  +K ++   ++L                  +M+ 
Sbjct: 845  VKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKA 904

Query: 412  IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
            +G VP     + ++R  CK G+++EA+ V++ +  A + P   +F  ++HG   +  + +
Sbjct: 905  LGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDD 964

Query: 472  ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
            A    + M   GL       T   L+  L   + +  A D++  + +KG   N+  +   
Sbjct: 965  AFHLKQLMESCGL--KVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITL 1022

Query: 532  IHSLFSNGHVKEACSYCLDMMDADVMPQ 559
              ++++ G +++      D+ D  ++P 
Sbjct: 1023 TGAMYATGTMQDGEKLLKDIEDRGIVPS 1050



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 175/385 (45%), Gaps = 23/385 (5%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTS 248
           V +A  V D M ++G  PD   +G LL  LC+   + +A +    + E+      +   +
Sbjct: 595 VLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNT 654

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           LL G CK G L EA  +  +M      PD   Y  LL G+ + GK+  A  LL+ M  KG
Sbjct: 655 LLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKG 714

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVTYTTLISGFCKSRKIDRC 367
             P+  +YT L+  L    +++ A+  F E+  + G  AD + Y ++++G+ K  +I+  
Sbjct: 715 LVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEI 774

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             ++ +M +  + P+  +Y  +M  + KK +L   + L  +M K G  PD   Y ++I  
Sbjct: 775 ERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFG 834

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C+ G ++ AV    +M    + P   +F +++  F  +  +  A + F  M   G +  
Sbjct: 835 LCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDID- 893

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
              G  +  L   ++A  V  ++   S IV   C+                G V+EA   
Sbjct: 894 ---GAFE--LKEDMKALGVVPSEVAESSIVRGLCKC---------------GKVEEAIIV 933

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKK 572
              +M A ++P   TF  LM GL K
Sbjct: 934 FSSIMRAGMVPTIATFTTLMHGLCK 958



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 178/416 (42%), Gaps = 22/416 (5%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
           T ++ + +     A+M  +A+ VL  +   G     F    +  +L +  S  +   LF 
Sbjct: 108 THIYCMAVHILVQAQMPSQAMSVLRHLALTG-----FSCSAIFSSLLRTISRCDPTNLFS 162

Query: 234 EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
                          L+  + KEGK+++A   +  M + GF+  +   NN+L+    + K
Sbjct: 163 ------------VDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINK 210

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE-ADVVTYT 352
               +  LKE   +    +  +  +++ +LC   K+ +A     +M+   C   + VTY 
Sbjct: 211 SEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKN--CRLPNAVTYN 268

Query: 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
           T+++ + K  +      ILD M + GI  +  TY  ++    K +       L+  MR++
Sbjct: 269 TILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREV 328

Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
              PD  +YN +I      G++  A+ ++N+M   SL P   ++  ++ G+   G   EA
Sbjct: 329 NLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEA 388

Query: 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532
                EM   G+   P   T  ALLN   +  K+  A D+   + ++   +N   +TI I
Sbjct: 389 RRVLYEMQITGV--RPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILI 446

Query: 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
                 G V +A      M+   + P   T++ L+ G+ K+       EI  +++K
Sbjct: 447 DGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQK 502



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 18/293 (6%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            Y +++    K  +   +  LM  M  E     ++  + ILM  +     + + + +  +M
Sbjct: 758  YNSMMNGYLKGGQINEIERLMRNMH-ENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDM 816

Query: 201  PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKL 259
             K G +PD   +  L+  LC+   ++ A K  ++M  E   P    F  L+  + ++ K+
Sbjct: 817  VKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKM 876

Query: 260  VEAKYVLVQMK-----DAGFE-----------PDIVVYNNLLSGYAQMGKMTDAFELLKE 303
              A  +   MK     D  FE           P  V  ++++ G  + GK+ +A  +   
Sbjct: 877  SNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSS 936

Query: 304  MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
            + R G  P   ++T L+  LC+  K+++A      ME  G + DVVTY  LI+G C  + 
Sbjct: 937  IMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKC 996

Query: 364  IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP 416
            I    ++ + M  +G+LPN  TY+ +  A      +++  +L+ ++   G VP
Sbjct: 997  ICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVP 1049



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 156/403 (38%), Gaps = 91/403 (22%)

Query: 141  YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
            Y  L+    K  K      L++ M  EK  +  T  +  L+    +   VK A  +  E+
Sbjct: 687  YTILLDGFCKRGKVVPALILLQ-MMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEI 745

Query: 201  P-KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
              K G   D   +  +++   K   + E  +L   M E    PS   +  L++G+ K+G+
Sbjct: 746  ICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQ 805

Query: 259  LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG-------------------------- 292
            L    Y+   M   G +PD V Y  L+ G  + G                          
Sbjct: 806  LSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDI 865

Query: 293  ---------KMTDA----------------FELLKEMRRKGCDPNANSYTVLIQALCRME 327
                     KM++A                FEL ++M+  G  P+  + + +++ LC+  
Sbjct: 866  LIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCG 925

Query: 328  KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
            K+EEA   F  + R+G    + T+TTL+ G CK  KID  + +                 
Sbjct: 926  KVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHL----------------- 968

Query: 388  HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447
                    K+ +E C          G   DV  YNV+I   C    + +A++++ EM++ 
Sbjct: 969  --------KQLMESC----------GLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSK 1010

Query: 448  SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
             L P   +++ +       G + +  +  K++  RG++  P Y
Sbjct: 1011 GLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIV--PSY 1051


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 199/401 (49%), Gaps = 6/401 (1%)

Query: 93  LALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA-SKQPNYVHSYDVYRALIKSLSKM 151
           LA + S V L  G+ + ++ RCGD       +++WA S+   Y H+      ++  L KM
Sbjct: 76  LAAECSEVRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACNRMVDLLGKM 135

Query: 152 RKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211
           R+   +W L+ EM      L+T +     +RR A+AR  + AI + D++   G E +   
Sbjct: 136 RQIDRMWDLLSEMHCRG--LVTVDTIAKSIRRLAAARRWRDAILLFDQLEDLGLERNTET 193

Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
              LLDALCK   V+ A ++F  +     P    F   ++GWC   ++ EA + + +MK+
Sbjct: 194 MNVLLDALCKERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMKN 253

Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
            GF P ++ Y  +L  Y +       +E+L  M  +GC PN  +YT+++ +L + E+ EE
Sbjct: 254 RGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMIMTSLTKCERFEE 313

Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP-NQLTYLHIM 390
           A      M+ SGC+ D + Y  LI+   ++  +    ++    + R ++P N  TY  ++
Sbjct: 314 ALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVPRNVATYNTMI 373

Query: 391 LAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC-KLGELKEAVNVWNEM-EAAS 448
               +    ++ ++++ EM    C PD+  Y  ++RL   + G+     ++ +E+ +   
Sbjct: 374 SILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLFGRRGQTGAIHHLLSELRDRNG 433

Query: 449 LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           L    D++ +++HG    G    A + + EMVG  ++  P+
Sbjct: 434 LGLDLDTYTLLIHGLCRVGETDWAYQLYDEMVGSEIVPRPK 474



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 138/303 (45%), Gaps = 6/303 (1%)

Query: 268 QMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327
           Q++D G E +    N LL    +  K+  A E+   M      P+A ++ + +   C + 
Sbjct: 181 QLEDLGLERNTETMNVLLDALCKERKVELAREVFV-MLSPHIAPDAYTFNIFVHGWCSVR 239

Query: 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYL 387
           +++EA     EM+  G    V+TYT ++  +CK R   R YEILDSM  +G  PN +TY 
Sbjct: 240 RIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYT 299

Query: 388 HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN-EMEA 446
            IM +  K E  EE + +   M+  GC PD   YN +I L  + G L EA  V+  EM  
Sbjct: 300 MIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPR 359

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL--RAQ 504
             +     ++  M+      G   +A +  KEM  +     P   T + LL  L   R Q
Sbjct: 360 NVVPRNVATYNTMISILCQYGRDDDALDVLKEMEAQS--CKPDLQTYQPLLRLLFGRRGQ 417

Query: 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564
              +   +       G  L++  +T+ IH L   G    A     +M+ ++++P+P T  
Sbjct: 418 TGAIHHLLSELRDRNGLGLDLDTYTLLIHGLCRVGETDWAYQLYDEMVGSEIVPRPKTCE 477

Query: 565 KLM 567
            L+
Sbjct: 478 LLL 480



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 112/296 (37%), Gaps = 39/296 (13%)

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
           ++  Q +  G+       N ++    +M ++   ++LL EM  +G     ++    I+ L
Sbjct: 108 FLWAQSRGGGYSHTPCACNRMVDLLGKMRQIDRMWDLLSEMHCRGL-VTVDTIAKSIRRL 166

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
               +  +A   F ++E  G E +  T   L+   CK RK++   E+   M+   I P+ 
Sbjct: 167 AAARRWRDAILLFDQLEDLGLERNTETMNVLLDALCKERKVELAREVF-VMLSPHIAPDA 225

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
            T+   +        ++E +  + EM+  G  P V  Y  V+   CK    +    + + 
Sbjct: 226 YTFNIFVHGWCSVRRIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDS 285

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA 503
           M +                   QGC                   P   T   ++ SL + 
Sbjct: 286 MSS-------------------QGC------------------HPNVITYTMIMTSLTKC 308

Query: 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
           ++ E A  V   + + GC+ +   +   I+ L   GH+ EA       M  +V+P+
Sbjct: 309 ERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVPR 364


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 216/485 (44%), Gaps = 63/485 (12%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y A+I  L +      V +L+ EMR     P +   +++  ++      R   +A ++L+
Sbjct: 154 YGAIIHWLGRKGDLTKVESLLGEMRARGLSPNV---QIYNTVINALCKCRSASQASDMLN 210

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEG 257
           +M K    PD   F  ++   C+   V+EA KL  E +R   +P+   +T L++G+C  G
Sbjct: 211 QMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRG 270

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           + + A  +LV+M   G  PD++    L+ G    G++ DA  + ++M  +   P+AN Y 
Sbjct: 271 EAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYN 330

Query: 318 VLIQALC-----------------------------------RMEKMEEANRAFVEMERS 342
           VLI  LC                                   R +K+ +A + F  ME  
Sbjct: 331 VLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEK 390

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
            C  D+V Y  +I G+CK   +      + SM + G +P++ TY  ++  + KK ++   
Sbjct: 391 AC-PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISAS 449

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
           + L+ +M K  C P++  Y  +I   C +G+   A +++ +M++  L P    + V++  
Sbjct: 450 LRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGS 509

Query: 463 FLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLNSLL---------------RAQK 505
              +  +I+A  YF+ M    LL+   P   T+  L+N L+               +A +
Sbjct: 510 LFKKDKVIQAAAYFEHM----LLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHE 565

Query: 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565
                DV+  +++ G +  + A+   I SL  +  + +A      M +   +P P TF  
Sbjct: 566 KSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLS 625

Query: 566 LMRGL 570
           L+ G 
Sbjct: 626 LLYGF 630



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 202/433 (46%), Gaps = 9/433 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  LI    +    G    L+ EM  +   P ++T    +  + R      + K   +L 
Sbjct: 119 YNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGD---LTKVESLLG 175

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           EM   G  P+  ++  +++ALCK  S  +A+ + ++M + RF P +  F +++ G+C+EG
Sbjct: 176 EMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREG 235

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + EA  +L +    G EP+ + Y  L+ G+   G+   A +LL EM  +G  P+  +  
Sbjct: 236 DVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLG 295

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI  L    ++ +A     +M       D   Y  LISG CK R +     +L+ M+++
Sbjct: 296 ALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQ 355

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            + P++  Y  ++    + ++L +  ++   M +  C PD+  YNV+I+  CK G +KEA
Sbjct: 356 KVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEA 414

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
           V   + M  A   P   ++  +V G+  +G +  +     +M+ R     P   T  +L+
Sbjct: 415 VTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKR--RCKPNIFTYASLI 472

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
                      A+D+++ + ++G   NV  +T+ I SLF    V +A +Y   M+     
Sbjct: 473 CGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCP 532

Query: 558 PQPDTFAKLMRGL 570
           P   T   L+ GL
Sbjct: 533 PNDATVHYLVNGL 545



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 169/366 (46%), Gaps = 4/366 (1%)

Query: 208 DEFVFGCLLDALCKNSSVKEAAKLFD-EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
           D++    ++  LC    V+E   L +    E   P    +  L+ G+C+ G +     +L
Sbjct: 80  DDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLL 139

Query: 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
            +M+  G  P +V Y  ++    + G +T    LL EMR +G  PN   Y  +I ALC+ 
Sbjct: 140 GEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKC 199

Query: 327 EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
               +A+    +M +S    DVVT+ T+I+GFC+   +    ++L   I+RG+ PNQL+Y
Sbjct: 200 RSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSY 259

Query: 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
             ++     + E     +L+ EM   G  PD+     +I      G++ +A+ V  +M  
Sbjct: 260 TPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAE 319

Query: 447 ASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506
             + P  + + V++ G   +  L  A    +EM+ + +   P       L++  +R+ K+
Sbjct: 320 RQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKV--QPDKFIYTTLIDGFVRSDKL 377

Query: 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566
             A+ ++  +  K C  ++ A+ + I      G +KEA +    M  A  +P   T+  L
Sbjct: 378 SDARKIFEFMEEKACP-DIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTL 436

Query: 567 MRGLKK 572
           + G  K
Sbjct: 437 VDGYAK 442



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 23/327 (7%)

Query: 160 LMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           ++ E   E+  +    ++ +L+      RM+  A  +L+EM +   +PD+F++  L+D  
Sbjct: 312 IVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGF 371

Query: 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV 279
            ++  + +A K+F+ M E+  P +  +  ++ G+CK G + EA   +  M+ AG  PD  
Sbjct: 372 VRSDKLSDARKIFEFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEF 431

Query: 280 VYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339
            Y  L+ GYA+ G ++ +  LL +M ++ C PN  +Y  LI   C +     A   F +M
Sbjct: 432 TYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKM 491

Query: 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT--YL--------HI 389
           +  G   +VV YT LI    K  K+ +     + M+     PN  T  YL        H 
Sbjct: 492 QSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHG 551

Query: 390 ML---------AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNV 440
           M+         AHEK   L+    L+ +    G  P +S YN +I   C+   L +A+++
Sbjct: 552 MVNSNRSDTKQAHEKSALLDVFRGLISD----GLDPRISAYNAIIFSLCRHNMLGKAMDL 607

Query: 441 WNEMEAASLSPGTDSFVVMVHGFLGQG 467
            ++M      P   +F+ +++GF   G
Sbjct: 608 KDKMSNKGCLPDPITFLSLLYGFSSAG 634



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 4/274 (1%)

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEADVVTYTTLISGF 358
           L  EM  +    +  S  V+++ LC   ++EE  R  +E     GC    V Y  LI G+
Sbjct: 68  LYGEMLVREGGADDYSTCVMVRGLCLEGRVEEG-RGLIEARWGEGCVPGAVFYNVLIDGY 126

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C+   I R   +L  M  +GI+P  +TY  I+    +K +L +   L+GEMR  G  P+V
Sbjct: 127 CRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNV 186

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             YN VI   CK     +A ++ N+M  +  +P   +F  M+ GF  +G + EA +  +E
Sbjct: 187 QIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLRE 246

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
            + RGL   P   +   L++      +  +A D+   ++ +G   ++      IH L  +
Sbjct: 247 AIRRGL--EPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVS 304

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G V +A      M +  VMP  + +  L+ GL K
Sbjct: 305 GQVNDALIVREKMAERQVMPDANIYNVLISGLCK 338



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 84/304 (27%)

Query: 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ----LITTEV------------------ 176
           ++Y  LI  L K R   A   L+EEM ++K Q    + TT +                  
Sbjct: 327 NIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEF 386

Query: 177 -----------FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225
                      + ++++ +    M+K+A+  +  M K GC PDEF +  L+D   K   +
Sbjct: 387 MEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDI 446

Query: 226 KEAAKLF-DEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
             + +L  D M+ R KP++  + SL+ G+C  G    A+ +  +M+  G  P++V Y  L
Sbjct: 447 SASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVL 506

Query: 285 LSGYAQMGKMTDA----------------------------------------------- 297
           +    +  K+  A                                               
Sbjct: 507 IGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEK 566

Query: 298 ---FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354
               ++ + +   G DP  ++Y  +I +LCR   + +A     +M   GC  D +T+ +L
Sbjct: 567 SALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSL 626

Query: 355 ISGF 358
           + GF
Sbjct: 627 LYGF 630


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 163/337 (48%), Gaps = 9/337 (2%)

Query: 137 SYDVYRALIKSLSKMRKFGAVW---ALMEEMRKE--KPQLITTEVFVILMRRFASARMVK 191
           S   Y +LI    K    G ++    L++EM +    P  +T   F +L+  +       
Sbjct: 225 SVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVT---FGVLINGYCKNSNTA 281

Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLL 250
            A+ V +EM + G       +  L+  LC    V+E  KL +EM +    P+   F  +L
Sbjct: 282 AAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVL 341

Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
            G+CK+G + +A   +  M +   EPD+V+Y  L+ GY ++GKM DA  + + M +KG  
Sbjct: 342 KGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGIS 401

Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
           PN  +Y  LI    R      A+    EM+  G EADVVTY  LI   C   ++ +  ++
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           LD M + G+ PN LTY  I+     K  ++   E+   M K     +V  YNV I+  C+
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           +G++ EA ++ NEM    L P   ++  +  G + +G
Sbjct: 522 IGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 7/319 (2%)

Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
           R+  P + T    +  + R    R   KA +V  ++  +G  P    +  L+D  CK   
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLR---KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGG 241

Query: 225 VKE---AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
                    L  EM E    P+   F  L+ G+CK      A  V  +MK  G    +V 
Sbjct: 242 AGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVT 301

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
           YN+L+SG    GK+ +  +L++EM   G  PN  ++  +++  C+   M +AN     M 
Sbjct: 302 YNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMT 361

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
               E DVV YT LI G+ +  K++    + ++M ++GI PN  TY  ++    +  +  
Sbjct: 362 ERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWR 421

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
               L+ EM++ G   DV  YNV+I   C  GE+++AV + +EM    L P   ++  ++
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 461 HGFLGQGCLIEACEYFKEM 479
            GF  +G +  A E    M
Sbjct: 482 QGFCDKGNIKSAYEIRTRM 500



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 201/441 (45%), Gaps = 10/441 (2%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           AL ++   +R + A     E   + +P   +T     L+     A+ V  A +      +
Sbjct: 128 ALARASQPLRAYDAFLLAGESHPRHRP---STSSVNALLAGLVGAKRVDLAEKAFRSALR 184

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEG---K 258
               PD + F  ++  LC+   +++A  +  +++     PS+  + SL+ G+CK+G    
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           +     +L +M +AG  P  V +  L++GY +      A  + +EM+++G   +  +Y  
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI  LC   K+EE  +   EME  G   + +T+  ++ GFCK   +    + +D M +R 
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+ + Y  ++  + +  ++E+ + +   M K G  P+V+ YN +I    + G+ + A 
Sbjct: 365 VEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            + +EM+   +     ++ V++     +G + +A +   EM   GL   P + T   ++ 
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL--EPNHLTYNTIIQ 482

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
                  ++ A ++ + +       NV  + ++I      G + EA     +M+D  ++P
Sbjct: 483 GFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVP 542

Query: 559 QPDTFAKLMRG-LKKLYNRQI 578
              T+  +  G ++K Y   I
Sbjct: 543 NGITYETIKEGMMEKGYTPDI 563



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y  LI   S+   + +   L++EM KEK        + +L+        V+KA+++LDEM
Sbjct: 407 YNCLITGFSRSGDWRSASGLLDEM-KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM 465

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259
            + G EP+   +  ++   C   ++K A ++   M + R + ++  +   +  +C+ GK+
Sbjct: 466 SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKM 525

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
            EA  +L +M D    P+ + Y  +  G  + G   D
Sbjct: 526 DEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPD 562


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 174/363 (47%), Gaps = 1/363 (0%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           +  LM    +   + +A+ +LDEM   G  P+   F  L+ ALCK   +  A+KL D M 
Sbjct: 38  YSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMF 97

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P+   + SL++G C +GKL +A  +L +M      P+ + +  L+ G+ + G+  
Sbjct: 98  LKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRAL 157

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           D   +L  +  KG   N  SY+ LI  L +  K E   + + EM   GC+ + + Y+ LI
Sbjct: 158 DGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALI 217

Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
            G C+  K D   E L  M  +G  PN  TY  +M  + +  ++ + + +  EM    C 
Sbjct: 218 DGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCN 277

Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
                Y+++I   CK G+LKEA+ VW +M +  +     ++  M+HGF     + +  + 
Sbjct: 278 HHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKL 337

Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
           F +M+       P   T   LLN+      V  A D+ + ++ +GC+ +     I++ +L
Sbjct: 338 FNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTL 397

Query: 536 FSN 538
             N
Sbjct: 398 RDN 400



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 175/346 (50%), Gaps = 3/346 (0%)

Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRH-FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276
           ALC+  +V +A ++F  M +R   +  + +++L++G C EG++ EA  +L +M+  G  P
Sbjct: 9   ALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFP 68

Query: 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336
           + V +N L+S   + G ++ A +L+  M  KGC PN  +Y  L+  LC   K+++A    
Sbjct: 69  NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 128

Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
             M  + C  + +T+ TL+ GF K  +      +L S+ ++G   N+ +Y  ++    K+
Sbjct: 129 NRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKE 188

Query: 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456
            + E  ++L  EM + GC P+   Y+ +I   C+ G+  EA     EM+    +P + ++
Sbjct: 189 GKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTY 248

Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516
             ++ G+   G + +A   +KEM                L+N L +  K++ A  VW  +
Sbjct: 249 SSLMWGYFEAGDIHKAILVWKEMTDND--CNHHEVCYSILINGLCKNGKLKEALIVWKQM 306

Query: 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562
           +++G +L+V A++  IH   +   V++       M+  +   QPD 
Sbjct: 307 LSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDV 352



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 2/299 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
              ++   C+ G + +A  V   M D     D   Y+ L+ G    G++ +A  LL EM+
Sbjct: 3   LIPIVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQ 62

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  PN  ++ VLI ALC+   +  A++    M   GC  + VTY +L+ G C   K+D
Sbjct: 63  VEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLD 122

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
           +   +L+ M+    +PN +T+  ++    K     + V ++  + + G   +  +Y+ +I
Sbjct: 123 KAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLI 182

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
               K G+ +  + +W EM      P T  +  ++ G   +G   EA EY  EM  +G  
Sbjct: 183 SGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKG-- 240

Query: 486 SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             P   T  +L+     A  +  A  VW  +    C  +   ++I I+ L  NG +KEA
Sbjct: 241 HTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEA 299



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 2/251 (0%)

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           ++ ALCR+  +++A   F  M    C AD  TY+TL+ G C   +ID    +LD M   G
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             PN + +  ++ A  KK +L    +L+  M   GCVP+   YN ++   C  G+L +A+
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 125

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
           ++ N M A    P   +F  +V GF+  G  ++       +  +G        +  +L++
Sbjct: 126 SLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRG--NEFSYSSLIS 183

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L +  K E    +W  +V KGC+ N   ++  I  L   G   EA  Y ++M +    P
Sbjct: 184 GLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTP 243

Query: 559 QPDTFAKLMRG 569
              T++ LM G
Sbjct: 244 NSFTYSSLMWG 254



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 2/283 (0%)

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           ++G +  A E+ + M  + C  +  +Y+ L+  LC   +++EA     EM+  G   + V
Sbjct: 12  RVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPV 71

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
            +  LIS  CK   + R  +++D+M  +G +PN++TY  ++     K +L++ + L+  M
Sbjct: 72  AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRM 131

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
               CVP+   +  ++    K G   + V V   +E         S+  ++ G   +G  
Sbjct: 132 VANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKG 191

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
               + +KEMV +G    P      AL++ L R  K + AK+    +  KG   N + ++
Sbjct: 192 EHGMQLWKEMVEKG--CKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYS 249

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             +   F  G + +A     +M D D       ++ L+ GL K
Sbjct: 250 SLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCK 292



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           +PN +    VY ALI  L +  K       + EM K K     +  +  LM  +  A  +
Sbjct: 207 KPNTI----VYSALIDGLCREGKPDEAKEYLIEM-KNKGHTPNSFTYSSLMWGYFEAGDI 261

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
            KAI V  EM    C   E  +  L++ LCKN  +KEA  ++ +M  R  K  +  ++S+
Sbjct: 262 HKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSM 321

Query: 250 LYGWCKEGKLVEAKYVLVQM--KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
           ++G+C    + +   +  QM   +   +PD+V YN LL+ +     ++ A ++L  M  +
Sbjct: 322 IHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQ 381

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           GCDP+  +  + ++ L       +  R F++               L+    K ++    
Sbjct: 382 GCDPDFITCDIFLKTLRDNMDPPQDGREFLD--------------ELVVRLIKRQRTVGA 427

Query: 368 YEILDSMIQRGILPNQLTY 386
             I++ M+Q+ +LP   T+
Sbjct: 428 SNIIEVMLQKFLLPKPSTW 446



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 2/149 (1%)

Query: 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483
           ++   C++G + +AV V+  M   +      ++  ++HG   +G + EA     EM   G
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543
               P       L+++L +   +  A  +   +  KGC  N   +   +H L   G + +
Sbjct: 66  TFPNPV--AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDK 123

Query: 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           A S    M+    +P   TF  L+ G  K
Sbjct: 124 AMSLLNRMVANKCVPNDITFGTLVDGFVK 152


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 198/441 (44%), Gaps = 45/441 (10%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           L P +   VI R  +   +G+++  ++    N  H Y  Y  L++SL +M     V  + 
Sbjct: 38  LTPLIAFEVIKRFNNP-KVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVF 96

Query: 162 EEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219
           + M  +   P        V  M + +   MVKK   +L E+       + FV+  LL  L
Sbjct: 97  DYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKK---LLAEVQGKEVRINSFVYNNLLSVL 153

Query: 220 CKNSSVKEAAKLFDE-MRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
            K + V EA  LF E +  +  P    F  L+ G C+ G +  A  V   M+  G  PD+
Sbjct: 154 VKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDV 213

Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMR-RKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           V YN L++G  +  ++    EL KE++ R  C P+  +YT +I   C+  KM+EA+  F 
Sbjct: 214 VTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFE 273

Query: 338 EMERSG-----------------------------------CEADVVTYTTLISGFCKSR 362
           EM RSG                                   C ADVVT+T+LI G+C++ 
Sbjct: 274 EMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAG 333

Query: 363 KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422
           +++   +  + M  R + P   TY  ++ A  K+  L E  + +G+++    +P    YN
Sbjct: 334 QVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYN 393

Query: 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482
            VI   CK G + E   +  EME     P   +F +++ G   +G + EA   F  M+  
Sbjct: 394 PVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLAT 453

Query: 483 GLLSAPQYGTLKALLNSLLRA 503
               AP   T+ +L++ LL+A
Sbjct: 454 R--CAPDNITVNSLISCLLKA 472



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 163/336 (48%), Gaps = 5/336 (1%)

Query: 140 VYRALIKSLSKMRKFG-AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           VY  L+  L K  +   A++   E +  + P    T  F IL+R       V +A EV  
Sbjct: 145 VYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPP--DTWTFNILIRGLCRVGGVDRAFEVFK 202

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF--KPSLRHFTSLLYGWCKE 256
           +M  +GC PD   +  L++ LCK + V+   +LF E++ R    P +  +TS++ G+CK 
Sbjct: 203 DMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKS 262

Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
           GK+ EA  +  +M  +G +P+++ +N L+ G+ ++G + +A  + ++M    C  +  ++
Sbjct: 263 GKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTF 322

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
           T LI   CR  ++    + +  M+       V TY  LI+  CK  +++   + L  +  
Sbjct: 323 TSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKN 382

Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
             I+P    Y  ++    K   ++E   ++ EM +  C PD   + ++I   C  G + E
Sbjct: 383 SSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFE 442

Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472
           A+N++N M A   +P   +   ++   L  G   EA
Sbjct: 443 AINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEA 478



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 3/331 (0%)

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +  L+   C+ G       V   M   G  PD  +   L++  AQ        +LL E++
Sbjct: 76  YNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQ 135

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            K    N+  Y  L+  L +  ++ EA   F E        D  T+  LI G C+   +D
Sbjct: 136 GKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVD 195

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR-KIGCVPDVSNYNVV 424
           R +E+   M   G LP+ +TY  ++    K  E++   EL  E++ +  C PD+  Y  +
Sbjct: 196 RAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSI 255

Query: 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
           I   CK G++KEA N++ EM  + + P   +F V++ GF   G + EA   +++M     
Sbjct: 256 ISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMA--YF 313

Query: 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +    T  +L++   RA +V      W+ + T+     VY + + I++L     + EA
Sbjct: 314 DCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEA 373

Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575
             +   + ++ ++P+P  +  ++ G  K  N
Sbjct: 374 RDFLGQIKNSSIIPKPFMYNPVIDGFCKAGN 404



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 117/256 (45%), Gaps = 1/256 (0%)

Query: 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
           ++Y +L+++LC+M   +  N  F  M   G   D      L++   ++   D   ++L  
Sbjct: 74  STYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAE 133

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           +  + +  N   Y +++    K+ ++ E + L  E   +   PD   +N++IR  C++G 
Sbjct: 134 VQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGG 193

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A  V+ +ME+    P   ++  +++G      +   CE FKE+  R   S P   T 
Sbjct: 194 VDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCS-PDIVTY 252

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
            ++++   ++ K++ A +++  ++  G + NV  + + I      G++ EA +    M  
Sbjct: 253 TSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAY 312

Query: 554 ADVMPQPDTFAKLMRG 569
            D      TF  L+ G
Sbjct: 313 FDCSADVVTFTSLIDG 328


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 196/414 (47%), Gaps = 6/414 (1%)

Query: 159 ALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
           AL+ EM +E       +++  +M  +   R  +K + V   + + G  P    +GCL++ 
Sbjct: 420 ALVREMEEEGID-APLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINM 478

Query: 219 LCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
             K   V +A ++   M+    K +++ ++ L+ G+ K      A  V   +   G +PD
Sbjct: 479 YTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPD 538

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
           +V+YNN++  +  MG M  A  ++KEM+++ C P + ++  +I    R  +M  A   F 
Sbjct: 539 VVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFD 598

Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397
            M RSGC   V T+  L+ G  + RK+++  EILD M   G+ P++ TY  IM  +    
Sbjct: 599 MMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALG 658

Query: 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
           +  +  E   +MR  G   DV  Y  +++  CK G ++ A+ V  EM A  +   T  + 
Sbjct: 659 DTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYN 718

Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
           +++ G+  +G + EA +  ++M   G+   P   T  + +N+  +A  +  A      + 
Sbjct: 719 ILIDGWARRGDIWEAADLMQQMNQEGV--QPDIHTYTSFINACCKAGDMLRATKTMEEME 776

Query: 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGL 570
             G + NV  +T  IH  ++N  + E    C + +  A + P    +  LM  L
Sbjct: 777 AAGVKPNVKTYTTLIHG-WANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSL 829



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 160/343 (46%), Gaps = 6/343 (1%)

Query: 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKA 193
           H+   Y  LI    K++ +   +A+ E++ K+  KP ++   ++  +++ F     + +A
Sbjct: 502 HNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVV---LYNNIIKAFCGMGNMDRA 558

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF-KPSLRHFTSLLYG 252
           I ++ EM K  C P    F  ++    +   ++ A ++FD MR     P++  F +L+ G
Sbjct: 559 IHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLG 618

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312
             ++ K+ +A  +L +M  AG  PD   Y  ++ GYA +G    AFE   +MR +G   +
Sbjct: 619 LVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLD 678

Query: 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372
             +Y  L++A C+  +M+ A     EM       +   Y  LI G+ +   I    +++ 
Sbjct: 679 VFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQ 738

Query: 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432
            M Q G+ P+  TY   + A  K  ++    + M EM   G  P+V  Y  +I       
Sbjct: 739 QMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANAS 798

Query: 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
             ++A++ + E++ A L P    +  ++   L +  + EA  Y
Sbjct: 799 LPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAYIY 841



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 187/441 (42%), Gaps = 43/441 (9%)

Query: 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKY 264
           +P    FG ++    +   +  A + F+ MR R   PS   +TSL++ +     + EA  
Sbjct: 291 KPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALS 350

Query: 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324
            + +M + G E  +V Y+ ++ G+A+ G    A    K+ + +  + NA  Y  +I A C
Sbjct: 351 CVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYC 410

Query: 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384
           +   M+ A     EME  G +A +  Y T++ G+   R  ++C  +   + + G  P+ +
Sbjct: 411 QACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVI 470

Query: 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCV----------------------------- 415
           TY  ++  + K  ++ + +E+   M+ +G                               
Sbjct: 471 TYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDV 530

Query: 416 ------PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
                 PDV  YN +I+  C +G +  A+++  EM+     P + +F+ ++HGF   G +
Sbjct: 531 IKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEM 590

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
             A E F  M   G +  P   T  AL+  L+  +K+E A ++   +   G   + + +T
Sbjct: 591 RRALEIFDMMRRSGCI--PTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYT 648

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             +H   + G   +A  Y   M +  +     T+  L++   K    Q A  +T ++   
Sbjct: 649 TIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQ 708

Query: 590 AAER-----QITFKMYKRRGE 605
              R      I    + RRG+
Sbjct: 709 KIPRNTFVYNILIDGWARRGD 729


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 180/359 (50%), Gaps = 12/359 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASAR 188
           +PN V        LI     + +    ++++ ++ K   +P  IT      LM+      
Sbjct: 84  EPNLV----TLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTIT---LTTLMKGLCLKG 136

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLR--HF 246
            V+K++   D++   G + ++  +G LL+ LCK    + A K F  M E     L    +
Sbjct: 137 EVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIK-FLRMIEDSSTGLNVVMY 195

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
            +++ G CK+  + EA     +M   G  P+++ Y  L+ G+   G++T AF LL EM  
Sbjct: 196 NTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMIL 255

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
           K  +PN  +Y +LI ALC+  K++EA     EM   G  ADVVTYT+L+ GFCK++ +D+
Sbjct: 256 KNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDK 315

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +   M + GI PN+ TY  ++    K   L++  +L  ++   GC  DV  YNV+I 
Sbjct: 316 ATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIG 375

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485
             CK G L EA+ + ++ME     P   +F +++     +    +A +   EM+ +GLL
Sbjct: 376 GLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGLL 434



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 174/357 (48%), Gaps = 9/357 (2%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERF 239
           M+ +++A  + K +EV       G EP+      L++  C    +  +  +  + ++  +
Sbjct: 65  MKHYSTAISLSKQMEV------KGIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGY 118

Query: 240 KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
           +P+    T+L+ G C +G++ ++ +   ++   GF+ + V Y  LL+G  ++G+   A +
Sbjct: 119 QPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIK 178

Query: 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
            L+ +       N   Y  +I  LC+ + + EA   + EM   G   +V+TYTTLI GFC
Sbjct: 179 FLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFC 238

Query: 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419
            + ++   + +L+ MI + I PN  TY  ++ A  K+ +++E   L+ EM   G   DV 
Sbjct: 239 LAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVV 298

Query: 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEM 479
            Y  ++   CK   L +A  ++ +M+   + P   ++  ++ G    G L +A + F+++
Sbjct: 299 TYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDL 358

Query: 480 VGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536
           + +G        T   ++  L +   ++ A  + S +   GC  NV  + I I SLF
Sbjct: 359 LVKG--CCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLF 413



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 139/297 (46%), Gaps = 2/297 (0%)

Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335
           P IV +  +L   A+M   + A  L K+M  KG +PN  +  +LI   C + +M  +   
Sbjct: 50  PPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSV 109

Query: 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395
             ++ + G + + +T TTL+ G C   ++ +     D ++ +G   NQ++Y  ++    K
Sbjct: 110 LGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCK 169

Query: 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455
             E    ++ +  +       +V  YN +I   CK   + EA + ++EM A  + P   +
Sbjct: 170 IGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVIT 229

Query: 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
           +  ++ GF   G L  A     EM+ + +   P   T   L+++L +  KV+ AK++ + 
Sbjct: 230 YTTLIGGFCLAGQLTGAFSLLNEMILKNI--NPNVYTYAILIDALCKEGKVKEAKNLLAE 287

Query: 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           +  +G   +V  +T  +     N ++ +A +  + M +  + P   T+  L+ GL K
Sbjct: 288 MHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCK 344



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 177/396 (44%), Gaps = 5/396 (1%)

Query: 222 NSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280
           ++ V +A   F+ M      P +  F  +L    K      A  +  QM+  G EP++V 
Sbjct: 30  DNVVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVT 89

Query: 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
            N L++ +  +G+M+ +F +L ++ + G  PN  + T L++ LC   +++++     ++ 
Sbjct: 90  LNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVV 149

Query: 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELE 400
             G + + V+Y TL++G CK  +     + L  +       N + Y  I+    K + + 
Sbjct: 150 AQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVN 209

Query: 401 ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460
           E  +   EM   G  P+V  Y  +I   C  G+L  A ++ NEM   +++P   ++ +++
Sbjct: 210 EAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILI 269

Query: 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520
                +G + EA     EM  RG        T  +LL+   + Q ++ A  ++  +   G
Sbjct: 270 DALCKEGKVKEAKNLLAEMHYRG--QPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWG 327

Query: 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA 580
            + N Y +T  I  L   G +K+A     D++         T+  ++ GL K      A 
Sbjct: 328 IQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEAL 387

Query: 581 EITEKVRKMAA-ERQITFKMYKRR-GERDLKEKAKK 614
            I  K+         +TF++  R   ++D  +KA+K
Sbjct: 388 AIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEK 423


>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
          Length = 465

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 170/362 (46%), Gaps = 3/362 (0%)

Query: 104 PGLTERVINRCGDAGNL-GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           P L  RVI     A  L   R+  W   +P++  S D + AL+  L++ R F  +W+L  
Sbjct: 83  PDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAA 142

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           +MR     L +   F  ++  +  +R+  +A+EV + +P++GC     V+  LLDALC N
Sbjct: 143 DMRALGLPL-SPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCAN 201

Query: 223 SSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            S   A KL   M R+   P    F++L+  WC  GKL EA+  L  M + GF P +   
Sbjct: 202 GSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGR 261

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           + L+ G  + G++ +A      M ++G  P+  ++  L +ALC    +E A     +   
Sbjct: 262 DLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASS 321

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   D+ TY  +I    K+ +ID  + +  + ++ G  P    Y  I+ A  K     +
Sbjct: 322 RGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFAD 381

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                G+M+  G  P+   Y +++++  + G   EA N   EM  A  +P   +F  +V 
Sbjct: 382 AFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVD 441

Query: 462 GF 463
           G 
Sbjct: 442 GL 443



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 6/348 (1%)

Query: 227 EAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            AA+    +R +  F  S  HF +LL    +         +   M+  G       ++ +
Sbjct: 100 HAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAADMRALGLPLSPSTFSAV 159

Query: 285 LSGYAQMGKMTD-AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           +S Y Q  ++TD A E+   + R GC      Y  L+ ALC       A +    M R G
Sbjct: 160 ISSYGQ-SRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKG 218

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              D  T++TL+  +C + K+      LD M +RG  P       ++    +   LEE  
Sbjct: 219 VAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAK 278

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
                M K G +PDV+ +N +    C  G+++ AV +  +  +  L P   ++ VM+   
Sbjct: 279 AFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAV 338

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G + EA   F   +  G    P      A++ +L +A +   A   +  + +KG   
Sbjct: 339 AKAGRIDEAFRLFYAALEDGHRPFPSL--YAAIIKALCKAGRFADAFAFFGDMKSKGHPP 396

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           N   + + +      G   EA +Y ++M +A   P+  TF  ++ GL+
Sbjct: 397 NRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLR 444


>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
          Length = 461

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 170/362 (46%), Gaps = 3/362 (0%)

Query: 104 PGLTERVINRCGDAGNL-GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALME 162
           P L  RVI     A  L   R+  W   +P++  S D + AL+  L++ R F  +W+L  
Sbjct: 79  PDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAA 138

Query: 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222
           +MR     L +   F  ++  +  +R+  +A+EV + +P++GC     V+  LLDALC N
Sbjct: 139 DMRALGLPL-SPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCAN 197

Query: 223 SSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
            S   A KL   M R+   P    F++L+  WC  GKL EA+  L  M + GF P +   
Sbjct: 198 GSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGR 257

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           + L+ G  + G++ +A      M ++G  P+  ++  L +ALC    +E A     +   
Sbjct: 258 DLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASS 317

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
            G   D+ TY  +I    K+ +ID  + +  + ++ G  P    Y  I+ A  K     +
Sbjct: 318 RGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFAD 377

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461
                G+M+  G  P+   Y +++++  + G   EA N   EM  A  +P   +F  +V 
Sbjct: 378 AFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVD 437

Query: 462 GF 463
           G 
Sbjct: 438 GL 439



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 6/348 (1%)

Query: 227 EAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
            AA+    +R +  F  S  HF +LL    +         +   M+  G       ++ +
Sbjct: 96  HAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAADMRALGLPLSPSTFSAV 155

Query: 285 LSGYAQMGKMTD-AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343
           +S Y Q  ++TD A E+   + R GC      Y  L+ ALC       A +    M R G
Sbjct: 156 ISSYGQ-SRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKG 214

Query: 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
              D  T++TL+  +C + K+      LD M +RG  P       ++    +   LEE  
Sbjct: 215 VAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAK 274

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
                M K G +PDV+ +N +    C  G+++ AV +  +  +  L P   ++ VM+   
Sbjct: 275 AFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAV 334

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
              G + EA   F   +  G    P      A++ +L +A +   A   +  + +KG   
Sbjct: 335 AKAGRIDEAFRLFYAALEDGHRPFPSL--YAAIIKALCKAGRFADAFAFFGDMKSKGHPP 392

Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           N   + + +      G   EA +Y ++M +A   P+  TF  ++ GL+
Sbjct: 393 NRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLR 440


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 231/515 (44%), Gaps = 53/515 (10%)

Query: 133  NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
            N   +++V   ++   +++ K      ++ +MR +   ++TT V   ++   A  R+V+ 
Sbjct: 756  NLERAHEVVECMVGVFAEIGKLKEAVDMILDMRNQG-LVLTTRVMNRIILVAAEMRLVEY 814

Query: 193  AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLY 251
            A  V DEM   G  PD   +  ++   C+N +V EA +   EM ER F       T ++ 
Sbjct: 815  AGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIIT 874

Query: 252  GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
             +C++  +  A +   ++   G  P+++ Y++++SG  + G +  AFELL+EM + G  P
Sbjct: 875  AFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKP 934

Query: 312  NANSYTVLIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCYEI 370
            N  ++T LI  LC+    E A R F+++ RS   + +V TYT +ISG+CK  K+ R   +
Sbjct: 935  NVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEML 994

Query: 371  LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
             + M ++G++PN  TY  ++  H K     +  ELM  M   G  P+   YN ++   CK
Sbjct: 995  FERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCK 1054

Query: 431  LGELKEAVNVWN-----EMEAASLS------------------------------PGTDS 455
             G  +EA  + N     ++EA  ++                              P    
Sbjct: 1055 RGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHL 1114

Query: 456  FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515
            +  ++  F  Q  + ++ + F E++  GL  AP   T  +++    R +KV +A   +  
Sbjct: 1115 YTTLIAAFCRQNMMKDSEKLFDEVIKLGL--APTKETYTSMICGYCREKKVSLAVKFFQK 1172

Query: 516  IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-------------QPDT 562
            +   GC  +  ++   I  L     + EA      M+D  + P             + + 
Sbjct: 1173 MSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTED 1232

Query: 563  FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597
            FA  M  L++L  +     +   +RK+  E+++  
Sbjct: 1233 FASAMVILERLNKKLWIRTVHTLIRKLCCEKKVAL 1267



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 2/292 (0%)

Query: 121  GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180
             +R ++   +  NY  +   Y A+I    K  K      L E M KE+  +  T  +  L
Sbjct: 955  AFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERM-KEQGLVPNTNTYTTL 1013

Query: 181  MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERF 239
            +     A    KA E+++ M   G  P+   +  ++D LCK    +EA KL +   + + 
Sbjct: 1014 IDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQI 1073

Query: 240  KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299
            +     +T L+   CK   + +A   L +M   GF+PDI +Y  L++ + +   M D+ +
Sbjct: 1074 EADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEK 1133

Query: 300  LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC 359
            L  E+ + G  P   +YT +I   CR +K+  A + F +M   GC  D ++Y  LISG C
Sbjct: 1134 LFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLC 1193

Query: 360  KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
            K  ++D   ++ D+MI +G+ P ++T + +   + K E+    + ++  + K
Sbjct: 1194 KESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNK 1245


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/538 (24%), Positives = 231/538 (42%), Gaps = 80/538 (14%)

Query: 99  GVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVW 158
           G   R G  +R +     A +LG R        P       VY  L+ +L +    GAV 
Sbjct: 94  GAFARAGSADRALKTFYRASDLGCR-------DP----GVRVYNHLLDALLRENMVGAVV 142

Query: 159 ALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216
            + + MRK    P + T   + +L+R       V  A ++LDEM + GC PDE   G ++
Sbjct: 143 PVYDNMRKAGVDPNVYT---YNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIV 199

Query: 217 DALCKNSSVKEAA------------------------------KLFDEMRER-FKPSLRH 245
             +CK   V+EA                                + +EM +R  +P++  
Sbjct: 200 SGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVT 259

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T+++  +CK  +L  A  +L +M   G  P+++ +  L+ G+ + GK+ DA  +   M 
Sbjct: 260 YTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMV 319

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            +G  P+  SY VLI+ LC +  ++ A   F  M+R+    +  TY+TL+ GF  +  +D
Sbjct: 320 DEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLD 379

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               I + M   G  PN + Y +++    KK   ++   L+ +M    C P+   +N +I
Sbjct: 380 GAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLI 439

Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG------------------ 467
              C  G +  A+NV++ M      P   ++  ++HG   +G                  
Sbjct: 440 GRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFE 499

Query: 468 -----------CLIEAC--EYFKEMVGRGLLSA--PQYGTLKALLNSLLRAQKVEMAKDV 512
                      CL + C  ++   ++GR ++    P   T  A++++  +  KV +A  +
Sbjct: 500 LSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACL 559

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
              +    C  NV A+TI I  L + G +  A  Y L M+   + P   T+  L+R +
Sbjct: 560 LGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 617



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 181/389 (46%), Gaps = 9/389 (2%)

Query: 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF- 239
           +RR A+A  V      L EM   G    E      + A  +  S   A K F    +   
Sbjct: 58  VRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGC 117

Query: 240 -KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
             P +R +  LL    +E  +     V   M+ AG +P++  YN L+    Q  ++  A 
Sbjct: 118 RDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAAR 177

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
           ++L EM RKGC P+  S+  ++  +C++ ++EEA R F+  E    +A   +Y  ++   
Sbjct: 178 KMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEA-RGFLA-ETVPVQA---SYNAVVHAL 232

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
           C   ++   + +++ M+QRG+ PN +TY  I+ A  K  EL     ++  M  +GC P+V
Sbjct: 233 CGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNV 292

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
             +  +++   + G++ +A+++W+ M     +P T S+ V++ G    G L  A ++F  
Sbjct: 293 LTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNS 352

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M    LL  P   T   L++    A  ++ A  +W+ + + GC+ NV  +T  I  L   
Sbjct: 353 MKRNALL--PNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKK 410

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLM 567
               +A S    M+  +  P   TF  L+
Sbjct: 411 MMFDQAESLIDKMLMDNCPPNTVTFNTLI 439



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 163/388 (42%), Gaps = 45/388 (11%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASAR 188
           QPN V     Y  ++ +  K R+     A++  M      P ++T   F  L++ F    
Sbjct: 254 QPNVV----TYTTIVDAFCKARELRMACAILARMVSMGCTPNVLT---FTALVKGFFEDG 306

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFT 247
            V  A+ +   M   G  P    +  L+  LC    +K A   F+ M R    P+   ++
Sbjct: 307 KVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYS 366

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ----------------- 290
           +L+ G+   G L  A  +  +MK +G +P++VVY N++    +                 
Sbjct: 367 TLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMD 426

Query: 291 ------------MGKMTD------AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
                       +G++ D      A  +   MRR GC PN  +Y  L+  L R    ++A
Sbjct: 427 NCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDA 486

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
               +EM  +G E  +VTY T+I+  C+         +L  M+ +GI P+  T+  I+ A
Sbjct: 487 FAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHA 546

Query: 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452
           + K+ ++     L+G+M  + C  +V  Y ++I   C  G+L  A+    +M    + P 
Sbjct: 547 YCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPN 606

Query: 453 TDSFVVMVHGFLGQGCLIEACEYFKEMV 480
             ++ V+V         I     FK +V
Sbjct: 607 EATWNVLVRAIFTNIGTIGPIHLFKYIV 634



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 8/283 (2%)

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC-EAD 347
           A  G +      L+EMR +G     ++    I A  R    + A + F      GC +  
Sbjct: 62  AAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPG 121

Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
           V  Y  L+    +   +     + D+M + G+ PN  TY  ++ A  + + ++   +++ 
Sbjct: 122 VRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLD 181

Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
           EM + GC PD  ++  ++   CKLG ++EA     E       P   S+  +VH   G+ 
Sbjct: 182 EMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAET-----VPVQASYNAVVHALCGEF 236

Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
            + E      EMV RGL   P   T   ++++  +A+++ MA  + + +V+ GC  NV  
Sbjct: 237 RMWEVFSVVNEMVQRGL--QPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLT 294

Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570
           +T  +   F +G V +A S    M+D    P   ++  L+RGL
Sbjct: 295 FTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGL 337


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/519 (24%), Positives = 246/519 (47%), Gaps = 10/519 (1%)

Query: 74  VEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPN 133
           V ++ R++    S  PK E  +++    L+P     V+ R  D   +  +++ WA +Q  
Sbjct: 144 VREVGRLIGLRSSWNPKHEGQMRNLLRSLKPSQVCAVL-RSQDDERVALKFFYWADRQWR 202

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKA 193
           Y H   VY ++++ LSK +       ++  M K +    T E F  +M  ++ A  ++ A
Sbjct: 203 YRHDPMVYYSMLEVLSKTKLCQGSRRVLVLM-KRRGIYRTPEAFSRVMVSYSRAGQLRDA 261

Query: 194 IEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYG 252
           ++VL  M + G EP+  +    +D   + + +++A +  + M+     P++  +  ++ G
Sbjct: 262 LKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRG 321

Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCDP 311
           +C   ++ EA  +L  M   G  PD V Y  ++    +  ++ +  +L+K+M ++ G  P
Sbjct: 322 YCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVP 381

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +Y  LI  L + +  +EA     + +  G   D + Y+ ++   CK  ++    +++
Sbjct: 382 DQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLI 441

Query: 372 DSMIQRG-ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430
           + M+ +G   P+ +TY  ++    +  E+++  +L+  M   G  P+  +Y  ++   C+
Sbjct: 442 NEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCR 501

Query: 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490
            G+  EA  + N  E    SP + ++ V++HG   +G L EAC+  +EMV +G    P  
Sbjct: 502 TGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPV- 560

Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
             +  LL SL R  +   A+      + KGC +NV  +T  IH    N  +  A S   D
Sbjct: 561 -EINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDD 619

Query: 551 MMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
           M   +      T+  L+  L K   +   AE TE ++KM
Sbjct: 620 MYLINKHADVFTYTTLVDTLGK---KGRIAEATELMKKM 655



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 158/319 (49%), Gaps = 5/319 (1%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFG-AVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
           +K+   V     Y  LI  L+K      A+W L +   +EK   I    +  ++      
Sbjct: 374 AKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDA--QEKGFRIDKLGYSAIVHALCKE 431

Query: 188 RMVKKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRH 245
             + +A ++++EM   G C PD   +  +++  C+   V +A KL   M     KP+   
Sbjct: 432 GRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVS 491

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           +T+LL G C+ GK +EA+ ++   ++  + P+ + Y+ ++ G  + GK+++A ++++EM 
Sbjct: 492 YTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMV 551

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
            KG  P      +L+Q+LCR  +  EA +   E    GC  +VV +TT+I GFC++ ++D
Sbjct: 552 LKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELD 611

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
               +LD M       +  TY  ++    KK  + E  ELM +M   G  P    Y  VI
Sbjct: 612 AALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVI 671

Query: 426 RLACKLGELKEAVNVWNEM 444
              C++G++ + V +  +M
Sbjct: 672 HRYCQMGKVDDLVAILEKM 690



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 192/414 (46%), Gaps = 35/414 (8%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVK 191
           PN V     Y  +I+    + +      L+E+M   K  L     +  +M      + + 
Sbjct: 310 PNVV----TYNCMIRGYCDLHRVEEAIELLEDMH-SKGCLPDKVSYYTIMGYLCKEKRIV 364

Query: 192 KAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
           +  +++ +M K +G  PD+  +  L+  L K+    EA     + +E+ F+     ++++
Sbjct: 365 EVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAI 424

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           ++  CKEG++ EAK ++ +M   G   PD+V Y  +++G+ ++G++  A +LL+ M   G
Sbjct: 425 VHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHG 484

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
             PN  SYT L+  +CR  K  EA       E      + +TY+ ++ G  +  K+    
Sbjct: 485 HKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEAC 544

Query: 369 EILDSMIQRGILPNQLTYLHIML--------AHEKKEELEECVELMGEMRKIGCVPDVSN 420
           +++  M+ +G  P  +  ++++L         HE ++ +EEC+         GC  +V N
Sbjct: 545 DVVREMVLKGFFPGPVE-INLLLQSLCRDGRTHEARKFMEECL-------NKGCAINVVN 596

Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480
           +  VI   C+  EL  A++V ++M   +      ++  +V     +G + EA E  K+M+
Sbjct: 597 FTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKML 656

Query: 481 GRGLLSAP-----------QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
            +G+   P           Q G +  L+  L +    +  + +++ ++ K C L
Sbjct: 657 HKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTIYNQVIEKLCVL 710



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 45/289 (15%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASA 187
           +PN V     Y AL+  + +  K      +M  M +E    P  IT  V +  +RR    
Sbjct: 486 KPNTVS----YTALLNGMCRTGKSLEAREMMN-MSEEHWWSPNSITYSVIMHGLRREGK- 539

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHF 246
             + +A +V+ EM   G  P       LL +LC++    EA K  +E + +    ++ +F
Sbjct: 540 --LSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNF 597

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T++++G+C+  +L  A  VL  M       D+  Y  L+    + G++ +A EL+K+M  
Sbjct: 598 TTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLH 657

Query: 307 KGCDPNANSY-TVL--------------------------------IQALCRMEKMEEAN 333
           KG DP   +Y TV+                                I+ LC + K+EEA+
Sbjct: 658 KGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTIYNQVIEKLCVLGKLEEAD 717

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
               ++ R+   +D  T   L+ G+ K       Y++   M  R ++P+
Sbjct: 718 TLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPD 766



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 4/210 (1%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
           F  ++  F     +  A+ VLD+M       D F +  L+D L K   + EA +L  +M 
Sbjct: 597 FTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKML 656

Query: 237 ER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
            +   P+   + ++++ +C+ GK+ +   +L +M     +    +YN ++     +GK+ 
Sbjct: 657 HKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKM--ISRQKCRTIYNQVIEKLCVLGKLE 714

Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
           +A  LL ++ R     +A +   L++   +      A +    M       DV     L 
Sbjct: 715 EADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLS 774

Query: 356 SGFCKSRKIDRCYEILDSMIQRG-ILPNQL 384
                  K+D   +++  +++RG I P  L
Sbjct: 775 KRLVLKGKVDEADKLMLRLVERGHISPQSL 804


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 193/399 (48%), Gaps = 7/399 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFT 247
           VK+A  VL+EM   G +P+ +    L++ LCK    + A +LF ++     +KP++  +T
Sbjct: 271 VKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 330

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            ++ G+CKEGKL  A+ +L +M + G  P+   Y  L+SG+ + G    AFEL+ +MRR+
Sbjct: 331 VMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRRE 390

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +Y  LI  LC+  K++EA +        G + D VTYT +I+  CK   I   
Sbjct: 391 GFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYA 450

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++ + M + G  P+  TY  ++  + ++ ++EE  +L  +   I  VP    Y  +I  
Sbjct: 451 LDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAG 510

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            CK+G+   A+ V+  M        + ++  ++ G   +  L EA   ++ M+ + L+  
Sbjct: 511 YCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLV-- 568

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L     R +K  +A  +   +  +     V    + +  L + GHV++A  +
Sbjct: 569 PCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTV---NVLVRKLSAIGHVEDASLF 625

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
               +D D+      +   +          +A EI+EK+
Sbjct: 626 LKKALDVDLAVDRLAYTSFINSCYANKKYALATEISEKI 664



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 186/418 (44%), Gaps = 19/418 (4%)

Query: 181 MRR----FASARMVKKAIEVLDEMPKYG----CEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           MRR    FA A  + +A +++ EM  +G     E   +V    LD      S   A K+F
Sbjct: 117 MRRMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRAGLD----TGSFAYARKVF 172

Query: 233 DEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
           D M  R    P  R F +L+ G C++G++ E   +L  M+  GF  D      ++  + Q
Sbjct: 173 DGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQ 232

Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
            G+  D  EL + M   G  PN  +YT  I  LC+   +++A     EM   G + +V T
Sbjct: 233 KGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYT 292

Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEM 409
           +T+LI+G CK    +R + +   +I+     PN  TY  ++  + K+ +L     L+G M
Sbjct: 293 HTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRM 352

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
            + G  P+ + Y  +I   CK G    A  + N+M      P   ++  ++ G   +G +
Sbjct: 353 VEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKI 412

Query: 470 IEACEYFKEMVGRGL-LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW 528
            EA +  +    +GL L    Y     ++    +   +  A D+++ +   GC  +++ +
Sbjct: 413 QEAYKVLRMANNQGLQLDKVTY---TVMITEHCKQGHITYALDLFNRMAENGCHPDIHTY 469

Query: 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
           T  I        ++E+       +  +++P   T+  ++ G  K+     A  + E++
Sbjct: 470 TTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERM 527



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 6/199 (3%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
           QPN       Y ALI  L K  K    + ++     +  QL     + +++        +
Sbjct: 393 QPNIY----TYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKV-TYTVMITEHCKQGHI 447

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE-MRERFKPSLRHFTSL 249
             A+++ + M + GC PD   +  L+   C+   ++E+ KLFD+ +     P+ + +TS+
Sbjct: 448 TYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSM 507

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+CK GK   A  V  +M   G + D + Y  L+SG  +  ++ +A  L + M  K  
Sbjct: 508 IAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRL 567

Query: 310 DPNANSYTVLIQALCRMEK 328
            P   +   L    CR EK
Sbjct: 568 VPCEVTPVTLAFEYCRREK 586



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
           T + +  ++  +        A+ V + M + GC+ D   +G L+  LCK S ++EA  L+
Sbjct: 500 TKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALY 559

Query: 233 DEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
           + M + R  P      +L + +C+  K V A  +L ++        +   N L+   + +
Sbjct: 560 EGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTV---NVLVRKLSAI 616

Query: 292 GKMTDAFELLKE 303
           G + DA   LK+
Sbjct: 617 GHVEDASLFLKK 628


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 204/459 (44%), Gaps = 49/459 (10%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
            Y  ++  L   R++    ALM EM +    P  +T   F   +R F    ++ +A+++L
Sbjct: 214 TYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVT---FATQIRAFCQNGLLDRAVQLL 270

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM---------------------- 235
           D MP+YGC PD  ++  L++   +   V +A +L + M                      
Sbjct: 271 DRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICYNAALKGLCIAQRW 330

Query: 236 -----------RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
                      R+   P+   F+ L    C+ G +  A  VL QM   G  PD V+YN L
Sbjct: 331 EDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTL 390

Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
           +  +++ G++ DA +LL  M    C P+  S+   ++ LCR E+ ++A    V+M R  C
Sbjct: 391 IYSFSEQGRVDDALKLLNSM---PCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDC 447

Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404
               +T+  LI   C++ +++   E+ + M + G  P+ +TY  ++    ++  +E  +E
Sbjct: 448 PLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIE 507

Query: 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
           L   M    C PD+  YN V++  C+    ++A  + + M      P   +F ++++   
Sbjct: 508 LFQSM---PCKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLC 564

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
            +G +  A E F++M   G  S P   T  AL+N      +++ A+ + S   T  C+ +
Sbjct: 565 QKGLVDRAIEVFEQMPKYG--STPDIFTYNALINGFSEQGRLDDARRLLS---TMSCKPD 619

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563
             ++   +  L      KEA     +M+     P   TF
Sbjct: 620 AVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 195/434 (44%), Gaps = 16/434 (3%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
            Y  LI    +  +     AL+  M    P    T  +  ++     AR  + A  ++ E
Sbjct: 182 TYTTLINGYCRSGRLADALALIASM----PVAPDTYTYNTVLMGLCGARQWEDAEALMAE 237

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
           M +  C P+E  F   + A C+N  +  A +L D M +    P +  +++L+ G+ ++G+
Sbjct: 238 MVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGR 297

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           + +A  +L  M     +P+ + YN  L G     +  D  +L+ EM RK C PN  ++++
Sbjct: 298 VDDAIELLNGML---CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSM 354

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           L   LC+   ++ A     +M + GC  D V Y TLI  F +  ++D   ++L+SM    
Sbjct: 355 LTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM---P 411

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
             P+ +++   +    + E  ++  EL+ +M +  C      +N++I   C+ G +  A+
Sbjct: 412 CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAI 471

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            V+ +M     +P   ++  +++G   QG +  A E F+ M  +     P      A+L 
Sbjct: 472 EVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMPCK-----PDIFGYNAVLK 526

Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558
            L RA + E A ++ S +  K C  N   + I I+SL   G V  A      M      P
Sbjct: 527 GLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTP 586

Query: 559 QPDTFAKLMRGLKK 572
              T+  L+ G  +
Sbjct: 587 DIFTYNALINGFSE 600



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 184/394 (46%), Gaps = 12/394 (3%)

Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
           IL+++  + R +  A  VLD +   G   D      L+   C++  + +A +L       
Sbjct: 117 ILIKKLCAQRRLADAERVLDALKAAGAA-DPVSHNTLVAGYCRDGRLADAERLLAAAGLS 175

Query: 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298
              ++  +T+L+ G+C+ G+L +A  ++  M  A   PD   YN +L G     +  DA 
Sbjct: 176 GAANVVTYTTLINGYCRSGRLADALALIASMPVA---PDTYTYNTVLMGLCGARQWEDAE 232

Query: 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF 358
            L+ EM R  C PN  ++   I+A C+   ++ A +    M + GC  DVV Y+TL++GF
Sbjct: 233 ALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGF 292

Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
            +  ++D   E+L+ M+ +   PN + Y   +      +  E+  +L+ EM +  C+P+ 
Sbjct: 293 SEQGRVDDAIELLNGMLCK---PNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNE 349

Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
           + ++++    C+ G +  A+ V  +M      P    +  +++ F  QG + +A +    
Sbjct: 350 ATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNS 409

Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
           M       +P   +  A L  L RA++ + A+++   ++ + C L    + I I SL  N
Sbjct: 410 MP-----CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQN 464

Query: 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
           G V  A      M      P   T++ L+ GL +
Sbjct: 465 GRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSE 498



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 11/289 (3%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
           +Y  LI S S+  +      L+  M    P +I+   F   ++    A     A E++ +
Sbjct: 386 IYNTLIYSFSEQGRVDDALKLLNSM-PCSPDVIS---FNAALKGLCRAERWDDAEELIVQ 441

Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGK 258
           M +  C   E  F  L+D+LC+N  V  A ++F++M +    P +  ++SL+ G  ++G 
Sbjct: 442 MLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQG- 500

Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
           LVE+   L Q      +PDI  YN +L G  +  +  DA EL+  M RK C PN  ++ +
Sbjct: 501 LVESAIELFQSMPC--KPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNI 558

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI +LC+   ++ A   F +M + G   D+ TY  LI+GF +  ++D    +L +M  + 
Sbjct: 559 LINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCK- 617

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
             P+ ++Y   +    + E  +E  E++ EM ++ C P+   +    RL
Sbjct: 618 --PDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTFKYANRL 664



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 41/261 (15%)

Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCE------------------------------- 345
            +LI+ LC   ++ +A R    ++ +G                                 
Sbjct: 116 NILIKKLCAQRRLADAERVLDALKAAGAADPVSHNTLVAGYCRDGRLADAERLLAAAGLS 175

Query: 346 --ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403
             A+VVTYTTLI+G+C+S ++     ++ SM    + P+  TY  +++      + E+  
Sbjct: 176 GAANVVTYTTLINGYCRSGRLADALALIASM---PVAPDTYTYNTVLMGLCGARQWEDAE 232

Query: 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
            LM EM +  C P+   +   IR  C+ G L  AV + + M     +P    +  +V+GF
Sbjct: 233 ALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGF 292

Query: 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523
             QG + +A E        G+L  P      A L  L  AQ+ E    +   +V K C  
Sbjct: 293 SEQGRVDDAIELLN-----GMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLP 347

Query: 524 NVYAWTIWIHSLFSNGHVKEA 544
           N   +++    L  NG V  A
Sbjct: 348 NEATFSMLTSCLCQNGLVDCA 368


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 216/497 (43%), Gaps = 72/497 (14%)

Query: 144 LIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFV-------------ILMRRFASAR 188
           L+  L K RK GAVW   +EM  R+  P + T  + +              L+++   + 
Sbjct: 139 LLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESG 198

Query: 189 MV-------------------KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229
            V                   K A+E++D+M   G E D   +  L+D LCKN+   +  
Sbjct: 199 YVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGY 258

Query: 230 KLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288
            L  +MR+R   P+   + S++ G+ KEGK+  A  +  +M      P+ V YN L+ G+
Sbjct: 259 LLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGH 318

Query: 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME------------------ 330
              G    A  +L+ M   G  PN  SY+ L+  LCR  K E                  
Sbjct: 319 CHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGC 378

Query: 331 -----------------EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373
                            E+ +   +M + G   DVVT++ LI+GFC+  KI    EI+  
Sbjct: 379 IAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICK 438

Query: 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGE 433
           M + G+ PN + Y  ++  + K  ++ E  ++   M +IG   +    NV++   CK G+
Sbjct: 439 MYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGK 498

Query: 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493
           +  A   ++ M      P + +F  +++G+   G  ++A   F EM+  G    P + T 
Sbjct: 499 VGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAG--HHPSHFTY 556

Query: 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553
             LL +L RA K + AK +   +      ++   +   +   F +G + +A +   +M+ 
Sbjct: 557 GGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQ 616

Query: 554 ADVMPQPDTFAKLMRGL 570
            +V+P   T+A +  GL
Sbjct: 617 RNVLPDSYTYAIIFAGL 633



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 198/451 (43%), Gaps = 32/451 (7%)

Query: 118 GNLGYRYYMWASKQPNY------------------VHSYDVYRALIKSLSKM-----RKF 154
           G L  ++  W  +QP                       Y+  ++++K LS+M       F
Sbjct: 25  GRLALKFLNWVIQQPGLELRHLTHMLSITTHILVRARLYENAKSILKHLSQMGVGSKSVF 84

Query: 155 GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214
           GA+      + K  P      VF +L+R +    MV  A+E    M   G  P  +    
Sbjct: 85  GALMN-TYPLCKSNPS-----VFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNM 138

Query: 215 LLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
           LL  L K   V      F EM   R  P +  F  L+   C EGKL +A Y+L +M+++G
Sbjct: 139 LLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESG 198

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
           + P +V YN +L+ Y + G+   A EL+ +M  KG + +A +Y +L+  LC+  +  +  
Sbjct: 199 YVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGY 258

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
               +M +     + +TY ++I+GF K  KI     I   M    +LPN +TY  ++  H
Sbjct: 259 LLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGH 318

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
                 E+ + ++  M   G  P+  +Y+ ++   C+  + + + ++   M    +  G 
Sbjct: 319 CHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGC 378

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++  M+ G    G L E+ +   +M+  G++  P   T   L+N   R  K++  K++ 
Sbjct: 379 IAYTAMIDGLCRNGLLNESVKLLDKMLKDGVV--PDVVTFSVLINGFCRVGKIKNVKEII 436

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
             +   G   N   +T  I++    G V EA
Sbjct: 437 CKMYKAGLAPNSIIYTTLIYNYCKTGDVVEA 467



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 184/381 (48%), Gaps = 11/381 (2%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARM 189
           PN V     Y ALI        F     ++E M     KP  ++    +  + R A   +
Sbjct: 306 PNCV----TYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFEL 361

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTS 248
            K    +L+ M   G       +  ++D LC+N  + E+ KL D+M ++   P +  F+ 
Sbjct: 362 SK---SILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSV 418

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
           L+ G+C+ GK+   K ++ +M  AG  P+ ++Y  L+  Y + G + +AF++   M R G
Sbjct: 419 LINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIG 478

Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
            D N     VL+ +LC+  K+  A   F  M + G   + +T+  +I+G+  S    + +
Sbjct: 479 YDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAF 538

Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
            + D MI+ G  P+  TY  ++ A  +  + +E   L+ ++  I    D   YN ++   
Sbjct: 539 SMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVET 598

Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
            K G L +AV +++EM   ++ P + ++ ++  G + +G ++ A  ++  ++G+G +S P
Sbjct: 599 FKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVS-P 657

Query: 489 QYGTLKALLNSLLRAQKVEMA 509
           +       ++ L RA + + A
Sbjct: 658 EKVMYTTFVDGLFRAGQSKAA 678



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 186/432 (43%), Gaps = 44/432 (10%)

Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA--LCKNSSVKEAA 229
           ITT + V        AR+ + A  +L  + + G      VFG L++   LCK++      
Sbjct: 52  ITTHILV-------RARLYENAKSILKHLSQMGVGSKS-VFGALMNTYPLCKSN------ 97

Query: 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289
                      PS+  F  L+  + +EG + +A      M   GF P +   N LL    
Sbjct: 98  -----------PSV--FDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLV 144

Query: 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349
           +  K+   +   KEM  +   P+ +++ +LI  LC   K+++A     +ME SG    VV
Sbjct: 145 KERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVV 204

Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
           TY T+++ +CK  +     E++D M  +GI  +  TY  ++    K     +   L+ +M
Sbjct: 205 TYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKM 264

Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL 469
           RK    P+   YN +I    K G++  A  ++ EM   +L P   ++  ++ G    G  
Sbjct: 265 RKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNF 324

Query: 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529
            +A    + M   G    P   +  ALLN L R  K E++K +   +   G  +   A+T
Sbjct: 325 EQALTILEMMEATG--PKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYT 382

Query: 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589
             I  L  NG + E+      M+   V+P   TF+ L+ G               +V K+
Sbjct: 383 AMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFC-------------RVGKI 429

Query: 590 AAERQITFKMYK 601
              ++I  KMYK
Sbjct: 430 KNVKEIICKMYK 441



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 163/349 (46%), Gaps = 5/349 (1%)

Query: 148  LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207
            + KM K G ++ +M       P L T   + IL+  +A  + + K   + + M + G  P
Sbjct: 707  MGKMAKAGDIFTMMWSGITISPSLAT---YNILLHGYAKKKNLSKCSNLYNIMMRTGIFP 763

Query: 208  DEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266
            D+     L+   CK++ +    KL  +M  +        F  L+  +C+  ++ +A  ++
Sbjct: 764  DKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLV 823

Query: 267  VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM 326
              M      PD+  +++++S  +++  + ++  LL EM  +GC P+   Y  L+  +CRM
Sbjct: 824  NIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRM 883

Query: 327  EKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
              +  A +   EME  G  +  V  + L+ G  K  K++    +LD M+++ ++P   T+
Sbjct: 884  GHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATF 943

Query: 387  LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446
              +M    + E L E ++L   M       DV  YNV+I   C  G++  A+ ++ E++ 
Sbjct: 944  TTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQ 1003

Query: 447  ASLSPGTDSFVVMVHG-FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494
              L P   ++ +++   F     L +     K++  RG++S    G ++
Sbjct: 1004 RGLWPNMTTYCILIDAIFTNDISLAKGEVLLKDLQERGVISGHWCGGIR 1052


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 191/381 (50%), Gaps = 5/381 (1%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           +RAL+    +  +F    AL+  M +E   L +    V++ R F      +    +   M
Sbjct: 184 FRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVV-RAFCRQGRFRDVPGLFGRM 242

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
            + G  P+   +   +D LCK   VK+A  + +EM  +  KP++   TSL+ G CK G  
Sbjct: 243 VEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWT 302

Query: 260 VEAKYVLVQM-KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
             A  + +++ K + ++P++  Y  ++ GY + GK+  A  LL  M  +G  PN N+YT 
Sbjct: 303 ERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTT 362

Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
           LI   CR    + A     +M+  G   ++ TY  +I GFCK  KI + Y++L     +G
Sbjct: 363 LIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQG 422

Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
           + P+++TY  ++  H K+  +   ++L  +M +  C PD+  Y  +I + C+  +++++ 
Sbjct: 423 LCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQ 482

Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
            ++++  +  L P   ++  M+ G+   G    A + F+ MV  G L  P   T  AL++
Sbjct: 483 QLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPI--TYGALIS 540

Query: 499 SLLRAQKVEMAKDVWSCIVTK 519
            L +  ++E A+ ++  ++ K
Sbjct: 541 GLCKESRLEEARALFETMLDK 561



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 188/401 (46%), Gaps = 7/401 (1%)

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFT 247
           VK+A  VL+EM   G +P+ +    L+D LCK    + A +LF ++     +KP++  +T
Sbjct: 267 VKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYT 326

Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
            ++ G+CKEGKL  A+ +L +M + G  P+   Y  L+ G+ + G    AFEL+ +M+ +
Sbjct: 327 VMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLE 386

Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
           G  PN  +Y  +I   C+  K+++A +        G   D VTYT LI+  CK   I   
Sbjct: 387 GFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYA 446

Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
            ++ + M +    P+  TY  I+  + ++ ++E+  +L  +   IG VP    Y  +I  
Sbjct: 447 LDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAG 506

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
            C++G+   A+ V+  M      P   ++  ++ G   +  L EA   F+ M+ + ++  
Sbjct: 507 YCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMV-- 564

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L     R  K  +A      +  +      +A    +  L +  ++  A  +
Sbjct: 565 PCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKRQ---QAHAADALVRKLSAVDNLDAASLF 621

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
             +++D        T+   +    +     +A+EI+EK+ K
Sbjct: 622 LKNVLDKHYAVDHATYTSFINSCYESNRYALASEISEKISK 662



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 138/307 (44%), Gaps = 5/307 (1%)

Query: 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
            A + FD M  R  P  R F +L+ G C+EG+  EA  +L  M   GF  D      ++ 
Sbjct: 167 HARQAFDGMGVR--PDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVR 224

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            + + G+  D   L   M   G  PN  +YT  +  LC+   +++A     EM   G + 
Sbjct: 225 AFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKP 284

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVEL 405
           +V T+T+LI G CK    +R + +   +++     PN  TY  ++  + K+ +L     L
Sbjct: 285 NVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEML 344

Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
           +G M + G  P+ + Y  +I   C+ G    A  + N+M+     P   ++  ++ GF  
Sbjct: 345 LGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCK 404

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
           +G + +A +  +    +GL   P   T   L+    +   +  A D+++ +    C  ++
Sbjct: 405 KGKIQQAYKVLRMATSQGL--CPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDI 462

Query: 526 YAWTIWI 532
             +T  I
Sbjct: 463 DTYTTII 469


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 228/498 (45%), Gaps = 39/498 (7%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y  L+    ++++F A   LM+EM +    P        V  +R+      +  A E++ 
Sbjct: 298 YCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGK---IDDAYELVV 354

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEG 257
           ++ ++G  P+ FV+  L+++LCK   + +A  L+  M     +P+   ++ L+  +C+ G
Sbjct: 355 KVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSG 414

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +L  A     +M   G    +  YN+L++G  + G ++ A  L  EM  KG +P A ++T
Sbjct: 415 RLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFT 474

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
            LI   C+  ++++A + + +M  +G   +V T+T LISG C + K+    E+ D +++R
Sbjct: 475 SLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVER 534

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
            I P ++TY  ++  + +  ++++  EL+ +M + G VPD   Y  +I   C  G + +A
Sbjct: 535 KIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKA 594

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL------------- 484
            +  +++   ++      +  ++HG+  +G L+EA     EM+ RG+             
Sbjct: 595 KDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDG 654

Query: 485 -LSAPQYGTLKALLNSL----LRAQKV---------------EMAKDVWSCIVTKGCELN 524
            L  P   T   LL  +    LR   V               + A + W  +VT+ C  N
Sbjct: 655 ALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPN 714

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584
           V  +T  ++ L   G +  A      M  A+V P   T+   +  L K  N + A  +  
Sbjct: 715 VVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHH 774

Query: 585 KVRKMAAERQITFKMYKR 602
            + K      +T  +  R
Sbjct: 775 AMLKGLLANTVTHNIIIR 792



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 202/454 (44%), Gaps = 38/454 (8%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           Y +LI    K     A  +L  EM  +  +  T   F  L+  +     V+KA ++ ++M
Sbjct: 438 YNSLINGQCKFGDLSAAESLFIEMTNKGVE-PTATTFTSLISGYCKDLQVQKAFKLYNKM 496

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
              G  P+ + F  L+  LC  + + EA++LFDE+ ER  KP+   +  L+ G+C++GK+
Sbjct: 497 IDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKI 556

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            +A  +L  M   G  PD   Y  L+SG    G+++ A + + ++ ++    N   Y+ L
Sbjct: 557 DKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSAL 616

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           +   C+  ++ EA  A  EM + G   D+V +  LI G  K       +++L  M  +G+
Sbjct: 617 LHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGL 676

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
            P+ + Y  ++  + K+   ++  E    M    C P+V  Y  ++   CK GE+  A  
Sbjct: 677 RPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGL 736

Query: 440 VWNEMEAASLSPGTDSF----------------------------------VVMVHGFLG 465
           ++  M+AA++ P + ++                                   +++ GF  
Sbjct: 737 LFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCK 796

Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
            G   EA +   EM   G+   P   T   L+    R+  V  +  +W  ++ +G E ++
Sbjct: 797 LGRFHEATKVLSEMTENGIF--PDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDL 854

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559
            A+ + I+    NG + +A     DM+   ++P 
Sbjct: 855 VAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 178/388 (45%), Gaps = 42/388 (10%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI  L    K      L +E+  RK KP  +T   + +L+  +     + KA E+L+
Sbjct: 508 FTALISGLCSTNKMAEASELFDELVERKIKPTEVT---YNVLIEGYCRDGKIDKAFELLE 564

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEG 257
           +M + G  PD + +  L+  LC    V +A    D++ ++  K +   +++LL+G+C+EG
Sbjct: 565 DMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEG 624

Query: 258 KLVEA------------------KYVLVQ-----------------MKDAGFEPDIVVYN 282
           +L+EA                    VL+                  M D G  PD V+Y 
Sbjct: 625 RLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYT 684

Query: 283 NLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342
           +++  Y++ G    AFE    M  + C PN  +YT L+  LC+  +M+ A   F  M+ +
Sbjct: 685 SMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAA 744

Query: 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEEC 402
               + +TY   +    K   +     +  +M+ +G+L N +T+  I+    K     E 
Sbjct: 745 NVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEA 803

Query: 403 VELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462
            +++ EM + G  PD   Y+ +I   C+ G +  +V +W+ M    L P   ++ ++++G
Sbjct: 804 TKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYG 863

Query: 463 FLGQGCLIEACEYFKEMVGRGLLSAPQY 490
               G L +A E   +M+ RG++   +Y
Sbjct: 864 CCVNGELDKAFELRDDMLRRGIIPDNKY 891



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/519 (23%), Positives = 225/519 (43%), Gaps = 41/519 (7%)

Query: 102 LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALM 161
           LRP   E+V+    D   L  R++ +     N  HS   Y  ++ +L   R F    +L+
Sbjct: 67  LRPHHVEQVLMNTLDDAKLALRFFNFLGLHKNMNHSTTSYAIMVHALVHSRLFWPANSLL 126

Query: 162 EEM--RKEKPQLITTEVFVILMR-RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218
             +  R+  P+ + +       R +F+S                         F  L+  
Sbjct: 127 HTLLLRESHPKCVFSHFLDSYKRCKFSST----------------------LGFNLLVQN 164

Query: 219 LCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
              +S + +A  +   M      P +R  ++LL G  K  K +    +  +  +AG  PD
Sbjct: 165 YVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPD 224

Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
               + ++    ++     A E ++ M   G D +  +Y VLI  LC+ +++ EA    V
Sbjct: 225 PYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEA----V 280

Query: 338 EMERS----GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           E++RS    G  ADVVTY TL+ GFC+ ++ +   +++D M++ G  P +     ++   
Sbjct: 281 EVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGL 340

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
            K+ ++++  EL+ ++ + G VP++  YN +I   CK G+L +A  +++ M   +L P  
Sbjct: 341 RKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNG 400

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
            ++ +++  F   G L  A  YF  M+  G+          +L+N   +   +  A+ ++
Sbjct: 401 ITYSILIDSFCRSGRLDVAISYFDRMIQDGI--GETVYAYNSLINGQCKFGDLSAAESLF 458

Query: 514 SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573
             +  KG E     +T  I     +  V++A      M+D  + P   TF  L+ GL   
Sbjct: 459 IEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCST 518

Query: 574 YNRQIAAEITE-----KVRKMAAERQITFKMYKRRGERD 607
                A+E+ +     K++       +  + Y R G+ D
Sbjct: 519 NKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKID 557



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 40/246 (16%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVL 197
           +Y ++I + SK   F   +   + M  E+  P ++T   +  LM     A  + +A  + 
Sbjct: 682 IYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVT---YTALMNGLCKAGEMDRAGLLF 738

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257
             M      P+   +GC LD L K  ++KEA  L   M +    +      ++ G+CK G
Sbjct: 739 KRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLG 798

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
           +  EA  VL +M + G  PD V Y+ L+  Y + G +  + +L   M  +G +P+  +Y 
Sbjct: 799 RFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYN 858

Query: 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
           +LI                      GC              C + ++D+ +E+ D M++R
Sbjct: 859 LLIY---------------------GC--------------CVNGELDKAFELRDDMLRR 883

Query: 378 GILPNQ 383
           GI+P+ 
Sbjct: 884 GIIPDN 889


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 213/516 (41%), Gaps = 77/516 (14%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202
           AL+ S  ++R      AL+   R  +P  +   + +  +   A A        VL EM K
Sbjct: 78  ALLYSHCRLRLLRPAIALL---RSSRPTTVAYNILLAALSDHAHAP------AVLAEMCK 128

Query: 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262
            G   D      LL  LC+N  V  AA L D         +  + +L+ G+C+ G    A
Sbjct: 129 RGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAA 188

Query: 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322
             V  +M   G   D+V YN L++G+ + G++  A  +L  M+  G DPN  +YT  I  
Sbjct: 189 LSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVY 248

Query: 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
            CR + +EEA   +  M R+G   DVVT + L++G C+  +    Y +   M + G  PN
Sbjct: 249 YCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPN 308

Query: 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCV--------------------------- 415
            +TY  ++ +  K    +E + L+GEM   G V                           
Sbjct: 309 HVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLR 368

Query: 416 --------PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
                   P+   Y V+I   CK   + EA  V  EME  S+SP   +F  +++GF+ +G
Sbjct: 369 FALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG 428

Query: 468 CLIEACEYFKEMVGRGL-LSAPQYGTL--------------------------------K 494
            L +A EY + M  RG+  +   YGTL                                 
Sbjct: 429 LLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVD 488

Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
           +L+N L +  K+E A  ++      G  L+   +T  I  LF  G +  A  +  ++MD 
Sbjct: 489 SLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDR 548

Query: 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590
           +++P    +   +  L  L   + A     ++R M 
Sbjct: 549 NMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMG 584



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 214/468 (45%), Gaps = 22/468 (4%)

Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
           S  PN V    V    +K    + K      +M+E R   P ++T   +  L+  F   +
Sbjct: 409 SISPNVVTFSSVINGFVKR-GLLDKATEYKRMMKE-RGINPNVVT---YGTLIDGFFKFQ 463

Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRH--F 246
               A+EV  +M   G + ++F+   L++ L +N  ++EA  LF +       SL H  +
Sbjct: 464 GQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGS-GLSLDHVNY 522

Query: 247 TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306
           T+L+ G  K G +  A     ++ D    PD VVYN  ++    +GK  +A   L EMR 
Sbjct: 523 TTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRN 582

Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
            G  P+ ++Y  +I + CR  +  +A +   EM+ S  + +++TY TL++G   +  +++
Sbjct: 583 MGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEK 642

Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
              +L+ M+  G  P+ LT+  ++ A  +   L+  +++   M   G   D++ YN +++
Sbjct: 643 AKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
           + C  G  ++A  V  EM  + ++P T +F  ++ G      L  A   + +M+ + +  
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNI-- 760

Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546
           +P   T   LL  L    ++  A  V   +   G E N   + I      + GH K++  
Sbjct: 761 SPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDI-----LATGHGKQSNK 815

Query: 547 ------YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
                 YC +M+    +P+  T+  L+    K      A E+ + ++K
Sbjct: 816 VEAMRLYC-EMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQK 862



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 156/350 (44%), Gaps = 12/350 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEM--RKEKPQLITTEVFV---ILMRRFASARMVKKAIE 195
           Y  LI  L K       +   +E+  R   P  +   VF+    ++ +F      K+A  
Sbjct: 522 YTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKF------KEAKS 575

Query: 196 VLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWC 254
            L EM   G +PD+  +  ++ + C+     +A KL  EM+    KP+L  + +L+ G  
Sbjct: 576 FLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLF 635

Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
             G + +AKY+L +M  AGF P  + +  +L   +Q  ++    ++ + M   G   +  
Sbjct: 636 GTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695

Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
            Y  L+Q LC      +A     EM  SG   D +T+  LI G CKS  +D  +     M
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755

Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
           + + I PN  T+  ++   E    + E   ++ EM K G  P+   Y+++     K    
Sbjct: 756 LHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNK 815

Query: 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
            EA+ ++ EM      P   ++  ++  F   G + +A E FK+M  RG+
Sbjct: 816 VEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGV 865



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 196/439 (44%), Gaps = 12/439 (2%)

Query: 135 VHSYDV--YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192
           +H+ DV  +  LI    ++    A  ++ + M  +   +     +  L+  F  A  V  
Sbjct: 164 IHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVG-YNTLVAGFCRAGQVDA 222

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
           A  VLD M + G +P+   +   +   C+   V+EA  L++ M R      +   ++L+ 
Sbjct: 223 ARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVA 282

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
           G C++G+  EA  +  +M   G  P+ V Y  L+   A+ G+  +   LL EM  +G   
Sbjct: 283 GLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVM 342

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +YT L+  L +  K +E               + VTYT LI   CK+  +D   ++L
Sbjct: 343 DLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVL 402

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
             M ++ I PN +T+  ++    K+  L++  E    M++ G  P+V  Y  +I    K 
Sbjct: 403 LEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKF 462

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVV--MVHGFLGQGCLIEACEYFKEMVGRGL-LSAP 488
                A+ V+++M    +    + F+V  +V+G    G + EA   FK+  G GL L   
Sbjct: 463 QGQDAALEVYHDMLCEGVK--VNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHV 520

Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548
            Y T   L++ L +A  +  A      ++ +    +   + ++I+ L   G  KEA S+ 
Sbjct: 521 NYTT---LIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFL 577

Query: 549 LDMMDADVMPQPDTFAKLM 567
            +M +  + P   T+  ++
Sbjct: 578 TEMRNMGLKPDQSTYNTMI 596



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/465 (21%), Positives = 200/465 (43%), Gaps = 43/465 (9%)

Query: 143 ALIKSLSKMRKFGAVWALMEEMRK--EKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
           AL+  L +  +F   +AL  EM K    P  +T   +  L+   A A   K+ + +L EM
Sbjct: 279 ALVAGLCRDGRFSEAYALFREMDKVGAAPNHVT---YCTLIDSLAKAGRGKELLSLLGEM 335

Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAK-LFDEMRERFKPSLRHFTSLLYGWCKEGKL 259
              G   D   +  L+D L K     E    L   + +   P+   +T L+   CK   +
Sbjct: 336 VSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNV 395

Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
            EA+ VL++M++    P++V ++++++G+ + G +  A E  + M+ +G +PN  +Y  L
Sbjct: 396 DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455

Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
           I    + +  + A   + +M   G + +     +L++G  ++ KI+    +       G+
Sbjct: 456 IDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGL 515

Query: 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE--- 436
             + + Y  ++    K  ++    +   E+     +PD   YNV I   C LG+ KE   
Sbjct: 516 SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKS 575

Query: 437 --------------------------------AVNVWNEMEAASLSPGTDSFVVMVHGFL 464
                                           A+ + +EM+ +S+ P   ++  +V G  
Sbjct: 576 FLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLF 635

Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524
           G G + +A     EMV  G   +P   T + +L +  +++++++  D+   ++  G   +
Sbjct: 636 GTGAVEKAKYLLNEMVSAGF--SPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHAD 693

Query: 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  +   +  L  +G  ++A     +M+ + + P   TF  L+ G
Sbjct: 694 ITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILG 738



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 146/358 (40%), Gaps = 43/358 (12%)

Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKE--KPQLITTEVFVILMRRFASARMVKKAIEVL 197
           VY   I  L  + KF    + + EMR    KP   T    ++   R        KA+++L
Sbjct: 556 VYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGE---TAKALKLL 612

Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPS-LRH---------- 245
            EM     +P+   +  L+  L    +V++A  L +EM    F PS L H          
Sbjct: 613 HEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 246 ------------------------FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281
                                   + +LL   C  G   +A  VL +M  +G  PD + +
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
           N L+ G+ +   + +AF    +M  +   PN  ++  L+  L  + ++ EA    +EME+
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEK 792

Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401
           SG E + +TY  L +G  K         +   M+ +G +P   TY  ++    K   + +
Sbjct: 793 SGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQ 852

Query: 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP--GTDSFV 457
             EL  +M+K G  P    Y++++    ++    E      +M+    SP  GT SF+
Sbjct: 853 AKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFI 910



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 1/249 (0%)

Query: 185 ASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSL 243
           + +R +   +++ + M   G   D  V+  LL  LC +   ++A  + +EM      P  
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDT 729

Query: 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
             F +L+ G CK   L  A     QM      P+I  +N LL G   +G++ +A  +L E
Sbjct: 730 ITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIE 789

Query: 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363
           M + G +PN  +Y +L     +     EA R + EM   G    V TY  LIS F K+  
Sbjct: 790 MEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGM 849

Query: 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV 423
           + +  E+   M +RG+ P   TY  ++    +     E  + + +M++ G  P     + 
Sbjct: 850 MTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSF 909

Query: 424 VIRLACKLG 432
           + R   K G
Sbjct: 910 ICRAFSKPG 918



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 6/204 (2%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           + ALI    K       +A   +M  +   P + T   F  L+    S   + +A  VL 
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIAT---FNTLLGGLESVGRIGEAGTVLI 788

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM K G EP+   +  L     K S+  EA +L+ EM  + F P +  + +L+  + K G
Sbjct: 789 EMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAG 848

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYT 317
            + +AK +   M+  G  P    Y+ L+SG++++   T+  + LK+M+ KG  P+  + +
Sbjct: 849 MMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLS 908

Query: 318 VLIQALCRMEKMEEANRAFVEMER 341
            + +A  +     +A R    + R
Sbjct: 909 FICRAFSKPGMTWQAQRLLKNLYR 932



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 14/301 (4%)

Query: 274 FEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332
           F P D    N LL  + ++  +  A  LL+  R     P   +Y +L+ AL        A
Sbjct: 68  FRPADPASLNALLYSHCRLRLLRPAIALLRSSR-----PTTVAYNILLAAL---SDHAHA 119

Query: 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392
                EM + G   D VT  TL++G C++ ++D    + D     GI    +   + ++A
Sbjct: 120 PAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADR--GGGIHALDVIGWNTLIA 177

Query: 393 -HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
            + +  +    + +   M   G   DV  YN ++   C+ G++  A  V + M+ A + P
Sbjct: 178 GYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDP 237

Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511
              ++   +  +     + EA + ++ MV  G+L      TL AL+  L R  +   A  
Sbjct: 238 NVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLL--DVVTLSALVAGLCRDGRFSEAYA 295

Query: 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571
           ++  +   G   N   +   I SL   G  KE  S   +M+   V+    T+  LM  L 
Sbjct: 296 LFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLG 355

Query: 572 K 572
           K
Sbjct: 356 K 356


>gi|297610666|ref|NP_001064867.2| Os10g0479200 [Oryza sativa Japonica Group]
 gi|255679497|dbj|BAF26781.2| Os10g0479200 [Oryza sativa Japonica Group]
          Length = 818

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 222/455 (48%), Gaps = 17/455 (3%)

Query: 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE---KPQLITTEVFVILMRRFASARMV 190
           Y HS      +I  L K  K G   + ++E RKE   KP  +T   F ILM    +   V
Sbjct: 219 YSHSI-----IINGLCKQDKVGEALSFLQEARKEGKFKPLGMT---FNILMSALCNWGFV 270

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSL 249
           + A   L  M KYG  PD + F  L+  LCK  S++EA  LF+ + +E  +  +  + SL
Sbjct: 271 QSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSL 330

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           + G+   G   E   ++  M+  G EPD+V Y  L++G+ + G + +  ++ K++  +G 
Sbjct: 331 INGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGL 390

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYE 369
             N  +Y+VL+ AL +     E +    E+   G + DV+ Y+ LI G+CK  +I++  +
Sbjct: 391 QLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQ 450

Query: 370 ILDSMI--QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
           + ++M   QR ++P  L +  I+L   KK  L E    +  + +     DV  YNVVI  
Sbjct: 451 VCNAMCSSQR-VMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVVIDG 509

Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
             KLG++  AV +++++  A + P   +   +++G+   G L  A  YF+ +   GLL  
Sbjct: 510 YAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQLSGLL-- 567

Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
           P   T   L+++L  A +V     ++  +V K  + N   +++ +  L       EA + 
Sbjct: 568 PTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINV 627

Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
             DM    +   P T+  L++G  +  N Q+A  I
Sbjct: 628 LKDMDSKGINADPITYNTLIQGFCESENVQMAFHI 662



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 183/423 (43%), Gaps = 40/423 (9%)

Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRH 245
           RM   A+E+ +EM   G  P E+    +++ LCK   V EA     E R+  +FKP    
Sbjct: 197 RMTDVALELFEEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMT 256

Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
           F  L+   C  G +  AK  L  M   G  PD   ++ L+ G  ++G M +A +L + + 
Sbjct: 257 FNILMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVT 316

Query: 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365
           ++G +    +Y  LI     +   +E  +    M   G E D+VTYT LI+G C+S  ++
Sbjct: 317 KEGMELEIVTYNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVE 376

Query: 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425
              ++   ++ +G+  N +TY  ++ A  KK    E   L+GE+  IG   DV  Y+++I
Sbjct: 377 EGMKVRKDVLDQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSILI 436

Query: 426 RLACKLGELKEAVNVWNEM-----------------------------------EAASLS 450
              CKLGE+++A+ V N M                                    A    
Sbjct: 437 HGYCKLGEIEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQ 496

Query: 451 PGTDSFV-VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509
           P    F  V++ G+   G ++ A   + ++   G+   P   T  +LL    +   +++A
Sbjct: 497 PTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGM--HPTIVTCNSLLYGYCKIGDLQLA 554

Query: 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569
           +  +  I   G       +T  + +L   G V    S   +M+   +     T++ +++G
Sbjct: 555 ESYFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKG 614

Query: 570 LKK 572
           L K
Sbjct: 615 LCK 617



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 2/286 (0%)

Query: 206 EPDEFVF-GCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHFTSLLYGWCKEGKLVEAK 263
           +P + VF   ++D   K   +  A +L+D++      P++    SLLYG+CK G L  A+
Sbjct: 496 QPTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAE 555

Query: 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323
                ++ +G  P  V Y  L+   ++ G++     L  EM  K    NA +Y+V+++ L
Sbjct: 556 SYFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGL 615

Query: 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383
           C+  + +EA     +M+  G  AD +TY TLI GFC+S  +   + I D M+ RG++P  
Sbjct: 616 CKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTP 675

Query: 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNE 443
           +TY  ++     K ++ +   L+  +R+ G       Y  +I+  C  G    AV +  +
Sbjct: 676 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGK 735

Query: 444 MEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489
           +  A      + F   ++    +    EA  +   M+  G+    Q
Sbjct: 736 LLDAGFEASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQ 781



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 188/407 (46%), Gaps = 22/407 (5%)

Query: 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM- 235
           + +L+       M  +   +L E+   G + D   +  L+   CK   +++A ++ + M 
Sbjct: 397 YSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMC 456

Query: 236 -RERFKP-SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293
             +R  P SL HF S+L G CK+G LVEA++ L  +       D+V YN ++ GYA++G 
Sbjct: 457 SSQRVMPTSLNHF-SILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGD 515

Query: 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTT 353
           + +A  L  ++   G  P   +   L+   C++  ++ A   F  ++ SG     VTYTT
Sbjct: 516 IVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTT 575

Query: 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413
           L+    ++ +++    + D M+ + I  N +TY  I+    K+   +E + ++ +M   G
Sbjct: 576 LMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKG 635

Query: 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473
              D   YN +I+  C+   ++ A ++ + M    L P   ++ ++++    +G +I+A 
Sbjct: 636 INADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLINVLCLKGKVIQAE 695

Query: 474 EYFKEMVGRGL-LSAPQYGTL------KAL-LNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
              + +   G+ L    Y TL      K + +N++L   K          ++  G E ++
Sbjct: 696 ILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGK----------LLDAGFEASI 745

Query: 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
             ++  I+ L      KEA  +   M+   + P    +  L R L+K
Sbjct: 746 EDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQK 792


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 208/451 (46%), Gaps = 38/451 (8%)

Query: 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFD 233
             +F  ++  F        AI +  +M K G  P+   +  ++  LCK+  + EA +  +
Sbjct: 256 VHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKE 315

Query: 234 EM-RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
           +M +E+  PSL  ++  + G  K  K+ EA  VL +M + GF P+ VVYN L+ GY +MG
Sbjct: 316 KMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMG 375

Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY- 351
            +++A ++  +M  KG  PN+ +   LIQ  C+ +++ +A     EM   G   +  ++ 
Sbjct: 376 NISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFS 435

Query: 352 ----------------------------------TTLISGFCKSRKIDRCYEILDSMIQR 377
                                             TTL+SG CK+ K     E+   ++ +
Sbjct: 436 MVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK 495

Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437
           G +PN +T   ++    K   ++E ++L+ +M + G V D   YN +I   CK G++KE 
Sbjct: 496 GFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEG 555

Query: 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497
             +  EM    + P   +F +++HG      + EA   + E    G +  P   T   ++
Sbjct: 556 FELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV--PNVYTYGVMI 613

Query: 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
           +   +A KVE  +++ + +V+K  ELN   +   I +   NG++  A     DM    V+
Sbjct: 614 DGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVL 673

Query: 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588
               T++ LM GL  +     A  + +++RK
Sbjct: 674 LSCATYSSLMHGLCNIGLVDDAKHLLDEMRK 704



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 220/497 (44%), Gaps = 53/497 (10%)

Query: 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARM 189
           PN V     Y  +I  L K  +    +   E+M KEK  P LIT  VF+           
Sbjct: 289 PNVV----TYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFI---NGLIKLEK 341

Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTS 248
           + +A  VL EM + G  P+E V+  L+D  CK  ++ EA K+ D+M  +   P+     S
Sbjct: 342 IDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNS 401

Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAG----------------------------------- 273
           L+ G+CK  ++ +A+ VL +M   G                                   
Sbjct: 402 LIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRN 461

Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333
             P+  +   L+SG  + GK  +A EL   +  KG  PN  +   LI  LC+   M+E  
Sbjct: 462 LRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETL 521

Query: 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393
           +   +M   G   D +TY TLISG CK  K+   +E+ + M+++GI P+  T+  ++   
Sbjct: 522 KLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGL 581

Query: 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453
              ++++E   L  E +K G VP+V  Y V+I   CK  +++E  N+ NE+ +  L   +
Sbjct: 582 CNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNS 641

Query: 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRG-LLSAPQYGTLKALLNSLLRAQKVEMAKDV 512
             +  ++  +   G +  A     +M  RG LLS   Y    +L++ L     V+ AK +
Sbjct: 642 VVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATY---SSLMHGLCNIGLVDDAKHL 698

Query: 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
              +  +G   NV  +T  I      G + +      +M   ++ P   T+  ++ G  K
Sbjct: 699 LDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCK 758

Query: 573 LYNRQIAA----EITEK 585
           L   + AA    E+TEK
Sbjct: 759 LGKTKEAAKLLNEMTEK 775



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 198/438 (45%), Gaps = 43/438 (9%)

Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
            PN V       +LI+   K  + G    ++EEM   +   I    F +++         
Sbjct: 393 SPNSV----TLNSLIQGFCKSDQIGQAENVLEEMIG-RGLPINQGSFSMVINWLCLKFRF 447

Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSL 249
             A+  + EM      P++ +   L+  LCK     EA +L+  +  + F P++    +L
Sbjct: 448 VTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNAL 507

Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
           ++G CK G + E   +L  M + G   D + YN L+SG  + GK+ + FEL +EM +KG 
Sbjct: 508 IHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGI 567

Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR--- 366
            P+  ++ +L+  LC  +K++EA+R + E +++G   +V TY  +I G+CK+ K++    
Sbjct: 568 QPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGEN 627

Query: 367 --------------------------------CYEILDSMIQRGILPNQLTYLHIMLAHE 394
                                            + + D M  RG+L +  TY  +M    
Sbjct: 628 LLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLC 687

Query: 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454
               +++   L+ EMRK G +P+V  Y  +I    KLG++ +   V  EM + ++ P   
Sbjct: 688 NIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKF 747

Query: 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514
           ++ +M+ GF   G   EA +   EM  +G+L  P   T  A  N L +  KVE A  V  
Sbjct: 748 TYTIMIDGFCKLGKTKEAAKLLNEMTEKGIL--PDAVTYNAFTNGLCKEGKVEEAFKVCD 805

Query: 515 CIVTKGCELNVYAWTIWI 532
            + +    L+   +T  I
Sbjct: 806 EMSSGAVCLDEITYTTLI 823



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 181/379 (47%), Gaps = 3/379 (0%)

Query: 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM-RERFKPSLRHFTSLLY 251
           A +V   + K G  P       LL +L K + +K++ +++D +      P +  F++++ 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
            +CK  +  +A  +  +M+  G  P++V YNN++ G  + G++ +A+   ++M ++   P
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEIL 371
           +  +Y+V I  L ++EK++EAN    EM   G   + V Y TLI G+CK   I    +I 
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 372 DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431
           D M+ +GI PN +T   ++    K +++ +   ++ EM   G   +  ++++VI   C  
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLK 444

Query: 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491
                A++   EM   +L P       +V G    G   EA E +  ++G+G +  P   
Sbjct: 445 FRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFV--PNIV 502

Query: 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551
           T  AL++ L +A  ++    +   ++ +G   +   +   I      G VKE      +M
Sbjct: 503 TSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEM 562

Query: 552 MDADVMPQPDTFAKLMRGL 570
           +   + P   TF  L+ GL
Sbjct: 563 VKKGIQPDIYTFNLLLHGL 581



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 179/374 (47%), Gaps = 4/374 (1%)

Query: 228 AAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286
           AA +F  + ++   PSL+  T LL    K  +L ++  V   +   G  PD+ +++ +++
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346
            + +  +  DA  L  +M + G  PN  +Y  +I  LC+  +++EA R   +M +     
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELM 406
            ++TY+  I+G  K  KID    +L  M + G +PN++ Y  ++  + K   + E +++ 
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 407 GEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466
            +M   G  P+    N +I+  CK  ++ +A NV  EM    L     SF ++++    +
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLK 444

Query: 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY 526
              + A  + +EM+ R L   P  G L  L++ L +A K   A ++W  ++ KG   N+ 
Sbjct: 445 FRFVTALHFIREMLLRNL--RPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIV 502

Query: 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586
                IH L   G+++E      DM++  ++    T+  L+ G  K    +   E+ E++
Sbjct: 503 TSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEM 562

Query: 587 RKMAAERQI-TFKM 599
            K   +  I TF +
Sbjct: 563 VKKGIQPDIYTFNL 576



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 6/159 (3%)

Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEK--PQLITTEVFVILMRRFASARMVKKAIEVLD 198
           Y +L+  L  +        L++EMRKE   P ++    +  ++  ++    + K   VL 
Sbjct: 679 YSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVC---YTTIIGGYSKLGQMNKVNIVLQ 735

Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEG 257
           EM  +   P++F +  ++D  CK    KEAAKL +EM E+   P    + +   G CKEG
Sbjct: 736 EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEG 795

Query: 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296
           K+ EA  V  +M       D + Y  L+ G  Q    T+
Sbjct: 796 KVEEAFKVCDEMSSGAVCLDEITYTTLIDGCHQPSTATN 834


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,390,073,497
Number of Sequences: 23463169
Number of extensions: 372669024
Number of successful extensions: 1287777
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8038
Number of HSP's successfully gapped in prelim test: 4472
Number of HSP's that attempted gapping in prelim test: 1081502
Number of HSP's gapped (non-prelim): 69383
length of query: 638
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 489
effective length of database: 8,863,183,186
effective search space: 4334096577954
effective search space used: 4334096577954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)